Query 011779
Match_columns 477
No_of_seqs 364 out of 1651
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 5.6E-45 1.2E-49 355.8 36.2 354 75-468 2-373 (374)
2 PLN02871 UDP-sulfoquinovose:DA 100.0 1.6E-43 3.4E-48 353.5 36.8 355 71-472 55-439 (465)
3 cd03796 GT1_PIG-A_like This fa 100.0 1.3E-43 2.9E-48 348.0 33.6 344 76-472 1-372 (398)
4 PRK14099 glycogen synthase; Pr 100.0 3E-43 6.4E-48 349.3 35.5 371 72-472 1-483 (485)
5 PLN02316 synthase/transferase 100.0 5.3E-43 1.1E-47 361.2 35.9 369 72-469 585-1035(1036)
6 PRK00654 glgA glycogen synthas 100.0 4.6E-43 9.9E-48 349.4 33.1 368 75-470 1-465 (466)
7 TIGR03449 mycothiol_MshA UDP-N 100.0 7E-43 1.5E-47 344.6 34.0 344 86-470 19-404 (405)
8 PRK15179 Vi polysaccharide bio 100.0 8.2E-43 1.8E-47 353.2 34.3 353 76-466 283-692 (694)
9 PLN02939 transferase, transfer 100.0 2.2E-42 4.7E-47 350.1 37.1 377 72-473 479-972 (977)
10 PRK15427 colanic acid biosynth 100.0 8.6E-43 1.9E-47 340.7 33.0 349 75-467 1-405 (406)
11 PRK10307 putative glycosyl tra 100.0 7.7E-43 1.7E-47 344.5 31.9 357 75-471 1-411 (412)
12 TIGR02472 sucr_P_syn_N sucrose 100.0 1.4E-42 3E-47 344.0 33.1 354 87-465 26-438 (439)
13 cd04962 GT1_like_5 This family 100.0 4.3E-42 9.3E-47 335.3 35.4 347 75-468 1-371 (371)
14 PRK15490 Vi polysaccharide bio 100.0 2.4E-41 5.2E-46 326.7 35.8 352 76-467 163-575 (578)
15 TIGR02095 glgA glycogen/starch 100.0 2.2E-41 4.8E-46 339.0 33.7 365 75-468 1-473 (473)
16 TIGR02149 glgA_Coryne glycogen 100.0 1.2E-40 2.5E-45 327.1 33.7 344 75-469 1-388 (388)
17 PRK14098 glycogen synthase; Pr 100.0 1.6E-40 3.5E-45 330.0 33.2 368 74-470 5-488 (489)
18 PRK15484 lipopolysaccharide 1, 100.0 3.8E-40 8.2E-45 320.3 35.0 339 75-469 3-379 (380)
19 cd04951 GT1_WbdM_like This fam 100.0 3.6E-40 7.9E-45 320.3 34.5 344 76-466 1-359 (360)
20 cd03792 GT1_Trehalose_phosphor 100.0 1.9E-40 4.1E-45 323.2 32.3 351 76-468 1-372 (372)
21 cd03805 GT1_ALG2_like This fam 100.0 8E-41 1.7E-45 328.8 29.9 344 75-461 1-392 (392)
22 cd03819 GT1_WavL_like This fam 100.0 3.3E-40 7.1E-45 320.0 32.9 336 81-457 4-355 (355)
23 TIGR02468 sucrsPsyn_pln sucros 100.0 1.9E-40 4.2E-45 341.2 32.6 378 72-472 167-675 (1050)
24 cd03807 GT1_WbnK_like This fam 100.0 1.9E-39 4.2E-44 314.8 34.0 345 76-466 1-365 (365)
25 cd03791 GT1_Glycogen_synthase_ 100.0 1.3E-39 2.8E-44 327.7 32.2 363 76-466 1-475 (476)
26 TIGR02470 sucr_synth sucrose s 100.0 4.4E-39 9.6E-44 325.2 35.2 372 72-465 253-745 (784)
27 cd03818 GT1_ExpC_like This fam 100.0 1.7E-39 3.7E-44 318.9 29.0 333 76-462 1-395 (396)
28 PRK09922 UDP-D-galactose:(gluc 100.0 2.7E-39 5.8E-44 313.1 28.9 341 75-470 1-358 (359)
29 cd03812 GT1_CapH_like This fam 100.0 1.5E-38 3.2E-43 308.8 32.6 329 76-450 1-348 (358)
30 cd05844 GT1_like_7 Glycosyltra 100.0 1.2E-38 2.6E-43 310.5 30.8 331 76-463 1-366 (367)
31 KOG1111 N-acetylglucosaminyltr 100.0 5.6E-40 1.2E-44 291.2 18.9 342 76-472 2-371 (426)
32 cd03800 GT1_Sucrose_synthase T 100.0 1.7E-38 3.7E-43 312.9 31.1 337 87-462 21-397 (398)
33 PLN02949 transferase, transfer 100.0 1.6E-37 3.5E-42 305.0 36.8 352 74-471 33-460 (463)
34 cd03799 GT1_amsK_like This is 100.0 1.7E-37 3.6E-42 301.0 33.7 334 76-460 1-354 (355)
35 cd03825 GT1_wcfI_like This fam 100.0 6.3E-38 1.4E-42 305.1 30.7 326 75-468 1-365 (365)
36 cd03822 GT1_ecORF704_like This 100.0 2.5E-37 5.5E-42 300.7 31.3 348 76-466 1-366 (366)
37 PLN02846 digalactosyldiacylgly 100.0 1.5E-37 3.2E-42 300.2 29.1 337 73-467 3-391 (462)
38 cd03795 GT1_like_4 This family 100.0 3.5E-37 7.6E-42 299.0 30.8 332 76-458 1-357 (357)
39 PLN00142 sucrose synthase 100.0 2.7E-37 5.8E-42 312.2 30.0 219 229-465 519-768 (815)
40 PRK10125 putative glycosyl tra 100.0 1.6E-37 3.5E-42 302.3 27.3 334 75-468 1-405 (405)
41 cd03802 GT1_AviGT4_like This f 100.0 1.3E-37 2.9E-42 299.2 26.3 321 75-466 1-335 (335)
42 cd03821 GT1_Bme6_like This fam 100.0 4.9E-37 1.1E-41 299.1 30.5 348 76-462 1-374 (375)
43 cd03820 GT1_amsD_like This fam 100.0 1.4E-36 3.1E-41 292.5 30.3 325 76-462 1-347 (348)
44 cd03813 GT1_like_3 This family 100.0 2E-37 4.3E-42 309.7 24.8 276 149-466 172-475 (475)
45 cd03806 GT1_ALG11_like This fa 100.0 4.5E-36 9.7E-41 294.6 33.8 342 76-459 2-418 (419)
46 cd03814 GT1_like_2 This family 100.0 9.7E-37 2.1E-41 296.3 28.2 342 76-466 1-364 (364)
47 cd03816 GT1_ALG1_like This fam 100.0 3.2E-36 6.9E-41 296.1 30.8 347 73-460 2-409 (415)
48 cd04955 GT1_like_6 This family 100.0 6.9E-36 1.5E-40 290.6 32.3 330 76-466 1-363 (363)
49 cd03808 GT1_cap1E_like This fa 100.0 7E-36 1.5E-40 289.0 31.8 331 76-462 1-358 (359)
50 cd03817 GT1_UGDG_like This fam 100.0 7.6E-36 1.6E-40 290.7 32.1 347 76-467 1-373 (374)
51 cd03801 GT1_YqgM_like This fam 100.0 7.8E-36 1.7E-40 289.6 32.0 351 76-466 1-374 (374)
52 TIGR03087 stp1 sugar transfera 100.0 1.3E-35 2.7E-40 291.4 30.6 340 77-466 1-395 (397)
53 cd03811 GT1_WabH_like This fam 100.0 6E-36 1.3E-40 288.6 27.8 337 76-453 1-352 (353)
54 cd03823 GT1_ExpE7_like This fa 100.0 4.6E-35 9.9E-40 283.8 31.6 335 76-466 1-358 (359)
55 cd03809 GT1_mtfB_like This fam 100.0 4.5E-36 9.7E-41 291.8 23.9 340 76-462 1-364 (365)
56 cd03794 GT1_wbuB_like This fam 100.0 6.3E-35 1.4E-39 285.9 30.0 344 76-461 1-393 (394)
57 cd03798 GT1_wlbH_like This fam 100.0 6.2E-35 1.3E-39 284.0 28.1 350 77-468 1-377 (377)
58 TIGR02918 accessory Sec system 100.0 2.3E-34 4.9E-39 285.5 28.1 273 148-468 209-500 (500)
59 cd04946 GT1_AmsK_like This fam 100.0 1.6E-33 3.5E-38 276.2 32.3 341 77-462 2-406 (407)
60 PLN02501 digalactosyldiacylgly 100.0 7.1E-34 1.5E-38 277.5 28.8 334 74-465 322-707 (794)
61 KOG0853 Glycosyltransferase [C 100.0 1.2E-32 2.6E-37 261.3 25.4 383 72-469 32-469 (495)
62 PHA01630 putative group 1 glyc 100.0 1.2E-31 2.7E-36 253.1 26.8 295 91-467 14-330 (331)
63 cd03804 GT1_wbaZ_like This fam 100.0 9.8E-32 2.1E-36 260.1 25.1 313 76-461 1-350 (351)
64 cd04949 GT1_gtfA_like This fam 100.0 1.1E-31 2.4E-36 261.9 25.0 263 149-461 98-372 (372)
65 PLN02275 transferase, transfer 100.0 6.4E-31 1.4E-35 255.0 25.0 307 76-431 6-371 (371)
66 PHA01633 putative glycosyl tra 100.0 2.6E-30 5.6E-35 240.7 27.9 307 75-463 1-335 (335)
67 COG0297 GlgA Glycogen synthase 100.0 2E-28 4.4E-33 236.7 29.9 371 75-473 1-483 (487)
68 PRK00726 murG undecaprenyldiph 100.0 1.3E-28 2.9E-33 238.5 27.4 323 74-466 1-356 (357)
69 PRK05749 3-deoxy-D-manno-octul 100.0 1.3E-27 2.9E-32 236.7 33.0 332 88-471 61-423 (425)
70 TIGR02400 trehalose_OtsA alpha 100.0 1.5E-27 3.2E-32 233.9 28.4 289 149-465 126-454 (456)
71 cd03788 GT1_TPS Trehalose-6-Ph 100.0 6E-28 1.3E-32 238.9 25.9 288 149-464 130-458 (460)
72 cd03785 GT1_MurG MurG is an N- 100.0 1.6E-27 3.6E-32 230.5 26.3 313 77-459 2-349 (350)
73 PRK13609 diacylglycerol glucos 100.0 1.2E-26 2.5E-31 226.7 29.6 338 73-468 3-372 (380)
74 TIGR01133 murG undecaprenyldip 100.0 5.6E-27 1.2E-31 226.6 25.4 312 75-459 1-346 (348)
75 cd03793 GT1_Glycogen_synthase_ 100.0 1.7E-26 3.7E-31 224.0 27.0 303 149-470 147-589 (590)
76 PF00534 Glycos_transf_1: Glyc 99.9 4.5E-27 9.7E-32 203.2 16.3 169 257-447 2-172 (172)
77 PLN02605 monogalactosyldiacylg 99.9 1.4E-25 3E-30 218.5 24.7 274 144-465 94-379 (382)
78 PLN03063 alpha,alpha-trehalose 99.9 3.7E-25 8E-30 230.1 28.5 295 150-471 147-481 (797)
79 PRK13608 diacylglycerol glucos 99.9 1.8E-24 3.8E-29 211.0 28.0 340 73-470 4-374 (391)
80 PRK14501 putative bifunctional 99.9 7.7E-24 1.7E-28 221.0 25.6 294 149-471 132-466 (726)
81 cd01635 Glycosyltransferase_GT 99.9 6.6E-23 1.4E-27 185.4 20.6 224 77-413 1-229 (229)
82 cd04950 GT1_like_1 Glycosyltra 99.9 2.5E-22 5.4E-27 195.2 24.7 324 77-467 6-371 (373)
83 KOG1387 Glycosyltransferase [C 99.9 9.1E-21 2E-25 168.1 30.5 356 74-472 43-463 (465)
84 TIGR02398 gluc_glyc_Psyn gluco 99.9 6.6E-21 1.4E-25 185.6 29.6 290 149-466 131-481 (487)
85 PRK00025 lpxB lipid-A-disaccha 99.9 1.9E-21 4.2E-26 190.1 25.6 344 74-470 1-376 (380)
86 TIGR00236 wecB UDP-N-acetylglu 99.9 6.3E-20 1.4E-24 178.2 26.2 332 75-463 1-363 (365)
87 COG0438 RfaG Glycosyltransfera 99.9 4.4E-19 9.6E-24 171.0 30.5 203 231-470 173-379 (381)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 8.5E-20 1.8E-24 177.5 25.3 328 76-464 1-361 (363)
89 PRK09814 beta-1,6-galactofuran 99.8 1.7E-19 3.6E-24 172.3 22.5 290 87-459 15-323 (333)
90 PLN03064 alpha,alpha-trehalose 99.8 1.4E-18 3.1E-23 179.8 25.9 293 150-469 231-563 (934)
91 TIGR00215 lpxB lipid-A-disacch 99.8 2.7E-17 5.9E-22 159.6 25.3 334 75-453 6-370 (385)
92 KOG2941 Beta-1,4-mannosyltrans 99.8 3.6E-16 7.7E-21 139.3 29.6 355 74-462 12-436 (444)
93 TIGR03713 acc_sec_asp1 accesso 99.8 3.1E-17 6.7E-22 163.1 24.2 219 198-465 268-519 (519)
94 TIGR02094 more_P_ylases alpha- 99.8 1.2E-16 2.6E-21 160.8 25.3 186 266-465 385-598 (601)
95 PF13692 Glyco_trans_1_4: Glyc 99.7 4E-18 8.6E-23 140.8 7.9 133 270-433 2-135 (135)
96 PRK12446 undecaprenyldiphospho 99.7 6.1E-14 1.3E-18 134.3 26.8 320 74-466 1-350 (352)
97 COG0707 MurG UDP-N-acetylgluco 99.7 5.5E-14 1.2E-18 132.9 25.0 300 87-448 11-339 (357)
98 cd04299 GT1_Glycogen_Phosphory 99.6 6.5E-14 1.4E-18 143.5 24.6 189 266-465 474-687 (778)
99 PF00982 Glyco_transf_20: Glyc 99.6 5.9E-13 1.3E-17 130.6 27.2 296 149-466 140-473 (474)
100 PF05693 Glycogen_syn: Glycoge 99.6 5.5E-13 1.2E-17 129.6 22.7 256 201-472 220-586 (633)
101 PRK10117 trehalose-6-phosphate 99.6 3.5E-12 7.6E-17 123.5 28.0 297 149-470 122-456 (474)
102 PF13524 Glyco_trans_1_2: Glyc 99.5 6.2E-14 1.3E-18 106.9 8.6 92 359-463 1-92 (92)
103 PLN02205 alpha,alpha-trehalose 99.5 3.1E-11 6.6E-16 126.6 29.1 297 152-470 203-554 (854)
104 TIGR02919 accessory Sec system 99.5 6.6E-12 1.4E-16 122.2 21.7 188 200-448 237-426 (438)
105 COG0380 OtsA Trehalose-6-phosp 99.4 1.8E-10 3.8E-15 111.2 27.9 296 149-467 146-479 (486)
106 TIGR03590 PseG pseudaminic aci 99.4 5.7E-11 1.2E-15 110.1 23.6 249 76-386 1-264 (279)
107 COG1519 KdtA 3-deoxy-D-manno-o 99.4 8.1E-10 1.8E-14 103.3 30.0 332 88-465 60-415 (419)
108 PF13439 Glyco_transf_4: Glyco 99.4 2E-13 4.3E-18 118.0 5.4 157 77-244 1-176 (177)
109 TIGR03492 conserved hypothetic 99.3 2.3E-10 5.1E-15 111.3 23.0 318 87-461 6-392 (396)
110 COG3914 Spy Predicted O-linked 99.3 1.6E-09 3.6E-14 104.0 26.3 346 71-472 256-618 (620)
111 PF13844 Glyco_transf_41: Glyc 99.3 1.7E-10 3.8E-15 111.3 17.7 188 260-469 275-468 (468)
112 PF02684 LpxB: Lipid-A-disacch 99.3 5.3E-09 1.1E-13 99.3 26.4 311 78-444 2-351 (373)
113 cd03784 GT1_Gtf_like This fami 99.3 1.1E-09 2.4E-14 108.0 21.9 94 336-444 285-382 (401)
114 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 6E-09 1.3E-13 100.5 24.3 330 75-464 1-364 (365)
115 PF13528 Glyco_trans_1_3: Glyc 99.2 3.6E-10 7.7E-15 107.8 14.6 126 268-430 191-317 (318)
116 COG0763 LpxB Lipid A disacchar 99.2 2.6E-08 5.7E-13 92.3 24.6 328 74-446 1-357 (381)
117 PF04007 DUF354: Protein of un 99.1 1.1E-08 2.5E-13 95.8 21.8 280 75-431 1-308 (335)
118 TIGR01426 MGT glycosyltransfer 99.0 1.8E-08 3.8E-13 99.0 19.7 118 337-465 273-390 (392)
119 COG0381 WecB UDP-N-acetylgluco 99.0 3.7E-07 8.1E-12 85.0 25.1 335 72-468 1-371 (383)
120 PF13579 Glyco_trans_4_4: Glyc 99.0 7.1E-10 1.5E-14 93.9 6.7 135 87-238 1-160 (160)
121 PRK01021 lpxB lipid-A-disaccha 99.0 4.2E-07 9.1E-12 90.3 26.1 318 74-448 226-586 (608)
122 COG3980 spsG Spore coat polysa 98.8 6.9E-07 1.5E-11 78.8 18.6 299 75-444 1-304 (318)
123 TIGR00661 MJ1255 conserved hyp 98.8 4.6E-07 9.9E-12 86.3 19.0 80 338-433 228-314 (321)
124 PF09314 DUF1972: Domain of un 98.8 2E-07 4.4E-12 79.1 12.9 152 74-240 1-185 (185)
125 COG1819 Glycosyl transferases, 98.7 3.7E-06 8E-11 82.1 21.3 163 269-465 237-399 (406)
126 PF04464 Glyphos_transf: CDP-G 98.7 6.7E-06 1.4E-10 80.0 22.6 335 73-465 12-367 (369)
127 COG4641 Uncharacterized protei 98.6 2.4E-06 5.2E-11 79.0 16.8 326 87-470 14-364 (373)
128 PRK14089 ipid-A-disaccharide s 98.6 4.6E-06 1E-10 79.0 17.8 249 74-387 1-259 (347)
129 PRK02797 4-alpha-L-fucosyltran 98.5 1.7E-05 3.7E-10 71.9 19.4 173 268-470 144-319 (322)
130 PF02350 Epimerase_2: UDP-N-ac 98.5 2.3E-06 5E-11 81.7 14.3 269 143-466 60-346 (346)
131 COG1817 Uncharacterized protei 98.5 4.8E-05 1E-09 68.4 20.8 268 91-435 14-316 (346)
132 PF07429 Glyco_transf_56: 4-al 98.4 0.00031 6.7E-09 64.8 23.8 170 268-468 183-356 (360)
133 KOG4626 O-linked N-acetylgluco 98.4 1.6E-05 3.5E-10 77.5 15.6 241 201-472 698-945 (966)
134 PF13477 Glyco_trans_4_2: Glyc 98.2 1.2E-05 2.7E-10 66.2 10.8 96 76-187 1-109 (139)
135 PRK10017 colanic acid biosynth 98.1 0.0076 1.6E-07 59.2 28.9 337 75-440 1-399 (426)
136 PF04101 Glyco_tran_28_C: Glyc 98.1 4E-08 8.6E-13 84.0 -6.9 99 339-444 55-155 (167)
137 COG4671 Predicted glycosyl tra 98.1 0.00034 7.4E-09 64.2 17.1 141 268-433 218-365 (400)
138 KOG3742 Glycogen synthase [Car 98.0 0.00056 1.2E-08 64.4 17.9 112 348-469 492-614 (692)
139 COG0058 GlgP Glucan phosphoryl 97.9 8.6E-05 1.9E-09 75.6 11.4 143 266-417 483-632 (750)
140 PHA03392 egt ecdysteroid UDP-g 97.9 0.00014 3E-09 73.3 12.6 144 268-446 295-445 (507)
141 PF08323 Glyco_transf_5: Starc 97.9 2.1E-05 4.6E-10 71.4 5.4 41 76-116 1-45 (245)
142 PRK14986 glycogen phosphorylas 97.5 0.00096 2.1E-08 69.1 11.1 151 265-426 538-703 (815)
143 TIGR02093 P_ylase glycogen/sta 97.3 0.0015 3.3E-08 67.5 10.8 151 265-426 522-687 (794)
144 cd04300 GT1_Glycogen_Phosphory 97.2 0.0015 3.2E-08 67.8 9.6 149 266-425 526-689 (797)
145 KOG1050 Trehalose-6-phosphate 97.2 0.021 4.5E-07 59.4 17.4 191 231-440 240-447 (732)
146 PF00343 Phosphorylase: Carboh 97.2 0.0064 1.4E-07 62.2 13.1 149 266-425 440-603 (713)
147 PF00201 UDPGT: UDP-glucoronos 96.9 0.005 1.1E-07 62.6 10.2 152 258-440 264-416 (500)
148 PLN02448 UDP-glycosyltransfera 96.9 0.026 5.6E-07 56.5 14.4 148 268-446 273-429 (459)
149 PLN02670 transferase, transfer 96.8 0.018 4E-07 57.3 12.8 119 341-468 341-466 (472)
150 PRK14985 maltodextrin phosphor 96.8 0.002 4.4E-08 66.5 6.2 144 265-416 524-682 (798)
151 PF11440 AGT: DNA alpha-glucos 96.7 0.15 3.3E-06 45.6 16.0 307 88-433 2-353 (355)
152 COG0859 RfaF ADP-heptose:LPS h 96.6 0.48 1.1E-05 45.3 20.2 97 269-388 175-276 (334)
153 PLN02410 UDP-glucoronosyl/UDP- 96.6 0.022 4.8E-07 56.6 11.2 96 339-446 324-422 (451)
154 PF15024 Glyco_transf_18: Glyc 96.5 0.3 6.6E-06 48.6 18.0 146 276-467 283-455 (559)
155 PLN03004 UDP-glycosyltransfera 96.4 0.04 8.7E-07 54.6 12.0 91 339-437 334-428 (451)
156 PLN03007 UDP-glucosyltransfera 96.4 0.1 2.2E-06 52.6 15.0 87 338-434 344-441 (482)
157 PLN00414 glycosyltransferase f 96.4 0.097 2.1E-06 52.0 14.3 157 268-448 251-418 (446)
158 PLN02764 glycosyltransferase f 96.3 0.083 1.8E-06 52.3 13.4 96 341-446 319-421 (453)
159 PLN02863 UDP-glucoronosyl/UDP- 96.2 0.18 4E-06 50.5 15.5 87 339-435 343-436 (477)
160 PLN02562 UDP-glycosyltransfera 96.2 0.11 2.3E-06 51.9 13.8 92 339-440 328-420 (448)
161 PLN02208 glycosyltransferase f 96.2 0.13 2.7E-06 51.1 13.9 101 339-447 311-416 (442)
162 PLN02210 UDP-glucosyl transfer 96.1 0.094 2E-06 52.3 12.8 142 268-435 268-417 (456)
163 COG3660 Predicted nucleoside-d 95.9 1.2 2.5E-05 39.9 23.1 114 257-386 150-269 (329)
164 PLN02173 UDP-glucosyl transfer 95.9 0.16 3.4E-06 50.5 13.1 99 339-446 317-420 (449)
165 TIGR03609 S_layer_CsaB polysac 95.8 1.7 3.7E-05 40.8 20.3 84 285-386 190-273 (298)
166 PLN02555 limonoid glucosyltran 95.8 0.28 6.2E-06 49.1 14.4 98 338-446 336-441 (480)
167 PLN02167 UDP-glycosyltransfera 95.7 0.22 4.7E-06 50.1 13.7 86 339-434 340-435 (475)
168 PF06258 Mito_fiss_Elm1: Mitoc 95.7 1.8 4E-05 40.7 21.8 243 88-386 2-253 (311)
169 PLN02554 UDP-glycosyltransfera 95.7 0.23 5E-06 50.0 13.8 90 339-438 342-446 (481)
170 PLN02992 coniferyl-alcohol glu 95.6 0.17 3.8E-06 50.6 12.2 85 340-434 339-428 (481)
171 PLN02152 indole-3-acetate beta 95.3 0.22 4.7E-06 49.6 11.6 89 338-434 326-418 (455)
172 PF12000 Glyco_trans_4_3: Gkyc 95.2 0.13 2.8E-06 43.4 8.3 37 201-244 134-170 (171)
173 PF05159 Capsule_synth: Capsul 95.2 0.23 4.9E-06 45.9 10.8 101 268-386 115-222 (269)
174 PF12038 DUF3524: Domain of un 95.1 0.2 4.2E-06 41.5 8.9 129 75-224 1-141 (168)
175 TIGR02195 heptsyl_trn_II lipop 95.1 0.3 6.4E-06 46.8 11.9 109 258-388 162-276 (334)
176 cd03789 GT1_LPS_heptosyltransf 94.8 0.21 4.7E-06 46.4 9.8 97 271-388 123-223 (279)
177 PLN02207 UDP-glycosyltransfera 94.8 0.81 1.8E-05 45.7 14.0 84 339-432 332-425 (468)
178 TIGR02193 heptsyl_trn_I lipopo 94.4 0.84 1.8E-05 43.3 12.8 98 268-388 178-279 (319)
179 PRK10964 ADP-heptose:LPS hepto 94.4 1.2 2.6E-05 42.3 13.8 98 268-388 177-278 (322)
180 PLN00164 glucosyltransferase; 94.0 1.9 4.2E-05 43.4 14.9 98 341-446 341-445 (480)
181 PF01075 Glyco_transf_9: Glyco 93.8 0.56 1.2E-05 42.6 10.0 99 267-387 103-207 (247)
182 PLN02534 UDP-glycosyltransfera 93.5 2.2 4.7E-05 43.1 14.2 42 339-387 344-387 (491)
183 PRK10916 ADP-heptose:LPS hepto 93.4 1.2 2.6E-05 42.9 12.0 109 259-388 169-286 (348)
184 PRK10422 lipopolysaccharide co 93.4 0.73 1.6E-05 44.5 10.5 100 269-387 183-286 (352)
185 KOG1192 UDP-glucuronosyl and U 92.8 1.4 3.1E-05 44.7 12.0 146 269-442 277-431 (496)
186 PF04230 PS_pyruv_trans: Polys 92.6 4.5 9.8E-05 37.0 14.4 33 347-386 248-280 (286)
187 TIGR02201 heptsyl_trn_III lipo 92.4 2.2 4.8E-05 41.0 12.3 101 268-387 180-284 (344)
188 COG2327 WcaK Polysaccharide py 91.9 13 0.00027 35.9 22.6 104 324-439 251-357 (385)
189 PF06925 MGDG_synth: Monogalac 91.5 0.57 1.2E-05 39.8 6.2 83 143-238 82-168 (169)
190 PF08288 PIGA: PIGA (GPI ancho 89.4 0.95 2.1E-05 33.0 4.8 48 140-189 40-87 (90)
191 PF04413 Glycos_transf_N: 3-De 89.3 5.3 0.00011 34.5 10.4 140 88-237 32-179 (186)
192 PF10087 DUF2325: Uncharacteri 89.2 0.78 1.7E-05 34.8 4.6 71 311-386 2-79 (97)
193 PRK09739 hypothetical protein; 89.0 1.4 3E-05 38.6 6.7 42 72-113 1-43 (199)
194 PLN03015 UDP-glucosyl transfer 88.2 9.1 0.0002 38.3 12.5 84 341-432 337-425 (470)
195 PF03033 Glyco_transf_28: Glyc 88.2 1.7 3.7E-05 35.2 6.4 42 91-142 13-54 (139)
196 PF03853 YjeF_N: YjeF-related 88.0 2.2 4.7E-05 36.2 7.0 81 73-156 24-105 (169)
197 TIGR02026 BchE magnesium-proto 86.1 2.8 6.1E-05 42.5 7.8 37 76-112 1-45 (497)
198 KOG1021 Acetylglucosaminyltran 84.4 9.6 0.00021 38.2 10.5 96 348-455 335-433 (464)
199 PRK00676 hemA glutamyl-tRNA re 84.1 40 0.00086 32.1 14.7 136 307-470 173-321 (338)
200 PF01113 DapB_N: Dihydrodipico 83.0 4.7 0.0001 32.1 6.4 37 348-386 59-95 (124)
201 PRK06988 putative formyltransf 83.0 5.4 0.00012 37.7 7.7 78 74-158 2-85 (312)
202 KOG3349 Predicted glycosyltran 82.1 20 0.00042 29.4 9.2 96 270-386 4-104 (170)
203 PF03016 Exostosin: Exostosin 81.9 1.1 2.5E-05 41.9 2.8 69 348-427 228-299 (302)
204 PRK05647 purN phosphoribosylgl 81.7 9.2 0.0002 33.4 8.1 74 74-158 1-88 (200)
205 cd03146 GAT1_Peptidase_E Type 81.6 15 0.00033 32.4 9.7 80 307-386 30-118 (212)
206 PF10933 DUF2827: Protein of u 77.5 67 0.0015 30.6 22.7 310 87-456 18-352 (364)
207 PRK13396 3-deoxy-7-phosphohept 77.5 52 0.0011 31.5 12.2 109 269-391 99-217 (352)
208 COG0373 HemA Glutamyl-tRNA red 76.9 74 0.0016 31.2 13.2 109 309-447 203-318 (414)
209 PF01975 SurE: Survival protei 76.1 6.5 0.00014 34.2 5.4 39 75-116 1-39 (196)
210 PRK00207 sulfur transfer compl 75.5 6.8 0.00015 31.4 5.1 40 75-114 1-42 (128)
211 PRK05282 (alpha)-aspartyl dipe 74.6 34 0.00073 30.7 9.7 78 310-399 33-123 (233)
212 PRK13940 glutamyl-tRNA reducta 74.2 93 0.002 30.7 13.5 72 310-403 207-278 (414)
213 PF00070 Pyr_redox: Pyridine n 74.2 17 0.00037 26.0 6.6 49 90-138 8-59 (80)
214 PHA03392 egt ecdysteroid UDP-g 73.9 4.8 0.0001 40.9 4.8 35 77-113 23-58 (507)
215 PF08660 Alg14: Oligosaccharid 73.8 40 0.00086 28.6 9.5 30 87-116 8-39 (170)
216 PF03401 TctC: Tripartite tric 73.5 47 0.001 30.7 10.9 148 271-445 79-244 (274)
217 PF03358 FMN_red: NADPH-depend 72.9 11 0.00024 31.0 6.1 40 75-114 1-41 (152)
218 cd03129 GAT1_Peptidase_E_like 72.4 34 0.00074 30.1 9.3 86 307-399 28-124 (210)
219 PF02951 GSH-S_N: Prokaryotic 72.3 7.5 0.00016 30.6 4.4 37 75-113 1-40 (119)
220 COG3414 SgaB Phosphotransferas 72.1 8.2 0.00018 28.9 4.4 54 311-365 5-58 (93)
221 PF00185 OTCace: Aspartate/orn 71.4 35 0.00076 28.5 8.6 79 74-159 2-82 (158)
222 COG2120 Uncharacterized protei 71.4 34 0.00073 30.8 9.1 43 71-115 7-49 (237)
223 PF02606 LpxK: Tetraacyldisacc 71.3 41 0.00089 32.0 10.0 36 81-116 40-77 (326)
224 cd01080 NAD_bind_m-THF_DH_Cycl 71.2 44 0.00095 28.2 9.2 70 306-386 42-113 (168)
225 PF11071 DUF2872: Protein of u 70.2 26 0.00057 27.7 6.8 33 351-386 67-104 (141)
226 PRK13397 3-deoxy-7-phosphohept 69.8 87 0.0019 28.4 12.0 99 276-388 20-128 (250)
227 PRK10840 transcriptional regul 68.8 49 0.0011 29.0 9.6 112 308-432 3-125 (216)
228 smart00672 CAP10 Putative lipo 68.5 20 0.00044 32.7 7.1 48 421-468 202-249 (256)
229 TIGR00460 fmt methionyl-tRNA f 67.5 23 0.00049 33.5 7.4 77 75-158 1-86 (313)
230 PRK10310 PTS system galactitol 67.5 32 0.00069 25.8 6.8 55 310-365 5-59 (94)
231 TIGR00639 PurN phosphoribosylg 67.3 43 0.00094 28.9 8.5 73 75-158 1-87 (190)
232 PRK00048 dihydrodipicolinate r 67.3 22 0.00048 32.5 7.2 37 348-386 52-88 (257)
233 PRK00005 fmt methionyl-tRNA fo 66.2 27 0.00059 32.9 7.7 77 75-158 1-86 (309)
234 PF02635 DrsE: DsrE/DsrF-like 65.9 31 0.00068 26.8 7.1 41 75-115 1-45 (122)
235 PLN02166 dTDP-glucose 4,6-dehy 65.8 1.1E+02 0.0024 30.4 12.3 35 73-113 119-153 (436)
236 PRK13054 lipid kinase; Reviewe 65.3 26 0.00057 32.8 7.5 42 72-115 1-42 (300)
237 KOG0780 Signal recognition par 65.1 1.4E+02 0.003 29.0 12.7 170 271-466 155-341 (483)
238 COG1887 TagB Putative glycosyl 64.5 1.5E+02 0.0032 29.1 16.3 183 221-437 163-357 (388)
239 COG2204 AtoC Response regulato 64.3 72 0.0016 31.8 10.3 112 310-436 6-125 (464)
240 KOG0780 Signal recognition par 64.1 37 0.00079 32.7 7.8 80 76-159 103-192 (483)
241 COG1703 ArgK Putative periplas 63.9 42 0.00091 31.2 7.9 77 87-163 62-156 (323)
242 PRK06849 hypothetical protein; 63.7 38 0.00083 33.1 8.6 36 73-114 3-38 (389)
243 PRK05562 precorrin-2 dehydroge 63.7 1.1E+02 0.0024 27.3 15.1 124 307-450 47-179 (223)
244 PRK08125 bifunctional UDP-gluc 63.6 25 0.00054 37.3 7.7 77 75-158 1-83 (660)
245 TIGR01768 GGGP-family geranylg 63.5 20 0.00043 31.8 5.7 75 278-365 5-80 (223)
246 COG0496 SurE Predicted acid ph 63.4 14 0.00031 33.2 4.9 38 75-116 1-38 (252)
247 PRK10360 DNA-binding transcrip 63.1 64 0.0014 27.4 9.2 67 357-432 48-117 (196)
248 PF00551 Formyl_trans_N: Formy 63.0 52 0.0011 28.1 8.3 27 75-106 1-27 (181)
249 COG0223 Fmt Methionyl-tRNA for 62.6 31 0.00067 32.3 7.1 78 74-158 1-87 (307)
250 TIGR00288 conserved hypothetic 62.6 51 0.0011 27.5 7.6 66 283-363 89-155 (160)
251 TIGR00853 pts-lac PTS system, 61.8 13 0.00028 28.0 3.7 71 311-386 7-79 (95)
252 COG1519 KdtA 3-deoxy-D-manno-o 61.0 1.3E+02 0.0029 29.4 11.1 99 269-387 49-151 (419)
253 TIGR01012 Sa_S2_E_A ribosomal 60.2 1.2E+02 0.0025 26.4 10.2 125 282-433 43-170 (196)
254 cd05565 PTS_IIB_lactose PTS_II 59.4 24 0.00052 26.8 4.8 72 311-386 4-76 (99)
255 PF12146 Hydrolase_4: Putative 59.1 30 0.00065 24.9 5.2 36 74-111 15-50 (79)
256 PLN02206 UDP-glucuronate decar 58.7 1.7E+02 0.0037 29.2 12.2 34 73-112 118-151 (442)
257 COG0512 PabA Anthranilate/para 58.6 20 0.00042 30.8 4.6 34 74-113 1-34 (191)
258 PF05686 Glyco_transf_90: Glyc 58.5 33 0.00072 33.6 7.0 49 420-468 270-318 (395)
259 PRK06756 flavodoxin; Provision 58.4 22 0.00049 29.1 5.1 37 75-112 2-38 (148)
260 PF02441 Flavoprotein: Flavopr 58.4 21 0.00046 28.5 4.8 37 75-114 1-37 (129)
261 COG2910 Putative NADH-flavin r 57.8 21 0.00045 30.5 4.6 35 75-115 1-35 (211)
262 PF00185 OTCace: Aspartate/orn 57.7 66 0.0014 26.8 7.8 78 270-365 2-82 (158)
263 KOG0832 Mitochondrial/chloropl 57.2 1.4E+02 0.003 26.5 11.2 73 336-431 161-233 (251)
264 PF02585 PIG-L: GlcNAc-PI de-N 57.1 95 0.0021 24.5 9.0 18 144-161 94-111 (128)
265 PRK00211 sulfur relay protein 56.9 26 0.00056 27.6 4.9 42 74-115 1-43 (119)
266 PRK13234 nifH nitrogenase redu 56.5 21 0.00046 33.4 5.1 39 72-113 1-41 (295)
267 PRK04175 rpl7ae 50S ribosomal 55.6 74 0.0016 25.2 7.3 79 283-378 33-112 (122)
268 PRK01372 ddl D-alanine--D-alan 55.2 22 0.00047 33.3 5.1 42 72-113 2-45 (304)
269 cd05564 PTS_IIB_chitobiose_lic 55.0 24 0.00053 26.5 4.3 71 311-386 3-75 (96)
270 PRK05583 ribosomal protein L7A 55.0 80 0.0017 24.2 7.1 78 284-379 21-98 (104)
271 PF01408 GFO_IDH_MocA: Oxidore 54.9 84 0.0018 24.3 7.7 65 307-386 24-90 (120)
272 TIGR01007 eps_fam capsular exo 54.9 28 0.00061 30.3 5.4 39 75-113 17-55 (204)
273 PF02302 PTS_IIB: PTS system, 54.4 31 0.00068 25.3 4.8 54 311-365 3-56 (90)
274 COG0062 Uncharacterized conser 54.1 85 0.0018 27.4 7.9 40 74-116 49-88 (203)
275 TIGR03646 YtoQ_fam YtoQ family 53.2 1.1E+02 0.0024 24.5 7.5 33 351-386 70-107 (144)
276 cd05566 PTS_IIB_galactitol PTS 53.2 71 0.0015 23.3 6.6 54 311-365 4-57 (89)
277 PF09949 DUF2183: Uncharacteri 52.8 87 0.0019 23.8 6.9 32 305-341 61-92 (100)
278 PF03949 Malic_M: Malic enzyme 52.6 1.8E+02 0.0039 26.5 10.0 80 305-386 22-137 (255)
279 PRK13556 azoreductase; Provisi 52.6 36 0.00077 29.9 5.7 40 74-113 1-45 (208)
280 PRK13530 arsenate reductase; P 52.5 47 0.001 26.7 5.9 78 72-158 1-82 (133)
281 PF02844 GARS_N: Phosphoribosy 52.4 29 0.00064 26.3 4.3 87 75-176 1-90 (100)
282 COG0394 Wzb Protein-tyrosine-p 52.4 35 0.00077 27.8 5.1 79 73-159 1-85 (139)
283 TIGR02069 cyanophycinase cyano 52.3 1.8E+02 0.004 26.4 10.9 86 307-400 27-127 (250)
284 PRK02255 putrescine carbamoylt 52.1 1.2E+02 0.0026 29.1 9.3 77 73-157 153-229 (338)
285 PRK14106 murD UDP-N-acetylmura 52.0 1.2E+02 0.0026 30.3 10.0 74 72-158 3-76 (450)
286 PLN00016 RNA-binding protein; 51.9 20 0.00044 34.9 4.4 40 73-114 51-90 (378)
287 PRK10494 hypothetical protein; 51.9 1E+02 0.0022 28.2 8.6 79 305-386 118-205 (259)
288 TIGR01769 GGGP geranylgeranylg 51.3 62 0.0014 28.3 6.8 73 279-365 5-78 (205)
289 COG4370 Uncharacterized protei 50.7 19 0.0004 33.3 3.5 93 340-450 295-396 (412)
290 PRK00170 azoreductase; Reviewe 50.6 33 0.00072 29.8 5.2 40 74-113 1-44 (201)
291 TIGR00715 precor6x_red precorr 50.4 1.1E+02 0.0024 27.9 8.5 72 75-162 1-78 (256)
292 PRK14805 ornithine carbamoyltr 50.4 1.1E+02 0.0024 28.7 8.7 77 73-158 146-222 (302)
293 COG3181 Uncharacterized protei 50.2 1.3E+02 0.0029 28.3 9.1 174 269-465 122-305 (319)
294 PRK09271 flavodoxin; Provision 50.2 36 0.00079 28.4 5.1 36 75-111 1-36 (160)
295 PRK05920 aromatic acid decarbo 50.1 34 0.00073 30.0 4.9 39 73-114 2-40 (204)
296 PF04127 DFP: DNA / pantothena 50.0 1.4E+02 0.003 25.7 8.6 55 91-157 30-89 (185)
297 PF04413 Glycos_transf_N: 3-De 49.6 31 0.00068 29.7 4.7 97 270-386 22-122 (186)
298 PRK11914 diacylglycerol kinase 49.5 49 0.0011 31.1 6.5 46 69-114 3-49 (306)
299 PF02310 B12-binding: B12 bind 49.2 1E+02 0.0022 23.9 7.4 22 91-112 15-36 (121)
300 cd05312 NAD_bind_1_malic_enz N 49.1 2.2E+02 0.0048 26.3 11.4 37 349-386 96-136 (279)
301 PRK06703 flavodoxin; Provision 49.0 36 0.00078 28.0 4.9 36 75-111 2-37 (151)
302 PRK13398 3-deoxy-7-phosphohept 49.0 2.2E+02 0.0047 26.2 14.6 103 272-387 28-139 (266)
303 PF11997 DUF3492: Domain of un 49.0 23 0.00051 32.5 4.0 40 75-114 1-43 (268)
304 PRK01906 tetraacyldisaccharide 48.9 1.1E+02 0.0023 29.3 8.5 37 80-116 60-98 (338)
305 PTZ00254 40S ribosomal protein 48.7 1.8E+02 0.0038 26.4 9.2 125 281-432 51-179 (249)
306 COG1927 Mtd Coenzyme F420-depe 48.5 1.8E+02 0.004 25.3 12.4 108 273-417 7-118 (277)
307 TIGR00658 orni_carb_tr ornithi 48.4 1.2E+02 0.0025 28.6 8.6 77 73-157 147-223 (304)
308 PRK04284 ornithine carbamoyltr 48.4 1.3E+02 0.0028 28.7 8.9 78 73-157 154-231 (332)
309 COG1647 Esterase/lipase [Gener 48.4 1.9E+02 0.004 25.8 8.9 34 76-111 16-49 (243)
310 PRK07200 aspartate/ornithine c 48.2 1.8E+02 0.0039 28.5 10.0 83 74-158 187-270 (395)
311 PF13241 NAD_binding_7: Putati 48.1 99 0.0022 23.4 6.8 47 349-404 53-100 (103)
312 TIGR01544 HAD-SF-IE haloacid d 47.7 1.9E+02 0.0042 26.7 9.6 48 307-364 210-264 (277)
313 COG0111 SerA Phosphoglycerate 47.7 1.7E+02 0.0037 27.8 9.6 37 348-386 189-230 (324)
314 PF13689 DUF4154: Domain of un 47.7 1.5E+02 0.0033 24.1 8.5 96 307-414 26-124 (145)
315 PRK14569 D-alanyl-alanine synt 47.6 38 0.00082 31.7 5.3 40 72-111 1-42 (296)
316 TIGR00064 ftsY signal recognit 47.4 2.3E+02 0.005 26.1 10.4 83 75-160 72-164 (272)
317 PRK11780 isoprenoid biosynthes 47.4 48 0.001 29.4 5.6 40 75-114 2-43 (217)
318 PF10087 DUF2325: Uncharacteri 47.3 68 0.0015 24.0 5.7 24 87-110 6-29 (97)
319 PRK05568 flavodoxin; Provision 47.2 46 0.001 26.9 5.2 38 75-113 2-39 (142)
320 PRK08305 spoVFB dipicolinate s 47.2 43 0.00093 29.1 5.1 38 73-114 4-43 (196)
321 cd01020 TroA_b Metal binding p 46.9 1.2E+02 0.0026 27.7 8.4 88 351-450 47-136 (264)
322 PRK06718 precorrin-2 dehydroge 46.5 1.2E+02 0.0025 26.6 7.9 71 72-158 8-78 (202)
323 PF13788 DUF4180: Domain of un 46.0 46 0.001 25.9 4.5 41 307-349 68-108 (113)
324 cd01967 Nitrogenase_MoFe_alpha 46.0 3E+02 0.0065 27.0 18.1 97 282-386 135-235 (406)
325 TIGR03012 sulf_tusD_dsrE sulfu 45.9 39 0.00085 27.0 4.4 39 77-115 2-42 (127)
326 PRK12862 malic enzyme; Reviewe 45.6 2.1E+02 0.0046 30.8 10.8 74 305-386 190-288 (763)
327 TIGR01286 nifK nitrogenase mol 45.2 3.6E+02 0.0077 27.6 15.5 119 215-341 128-252 (515)
328 COG4565 CitB Response regulato 45.2 1.4E+02 0.0029 26.4 7.6 69 356-432 46-119 (224)
329 PF00308 Bac_DnaA: Bacterial d 45.2 1E+02 0.0022 27.3 7.4 115 348-468 89-212 (219)
330 TIGR03316 ygeW probable carbam 45.0 2E+02 0.0044 27.7 9.7 83 74-158 170-253 (357)
331 PRK07313 phosphopantothenoylcy 45.0 45 0.00098 28.6 4.9 37 75-114 2-38 (182)
332 cd01972 Nitrogenase_VnfE_like 44.8 3.3E+02 0.0071 27.1 16.6 157 215-386 75-241 (426)
333 PRK10017 colanic acid biosynth 44.7 1.9E+02 0.0041 28.8 9.8 40 273-318 3-43 (426)
334 COG0716 FldA Flavodoxins [Ener 44.7 46 0.00099 27.4 4.8 37 74-111 1-37 (151)
335 TIGR03446 mycothiol_Mca mycoth 44.0 2.4E+02 0.0052 26.2 9.8 16 98-113 22-37 (283)
336 PF02525 Flavodoxin_2: Flavodo 44.0 43 0.00094 29.0 4.8 40 75-114 1-43 (199)
337 COG4635 HemG Flavodoxin [Energ 43.8 46 0.001 27.6 4.4 37 75-112 1-37 (175)
338 PRK03515 ornithine carbamoyltr 43.8 1.6E+02 0.0035 28.1 8.8 79 73-158 155-233 (336)
339 PLN02918 pyridoxine (pyridoxam 43.8 1E+02 0.0022 31.5 7.8 36 75-113 136-171 (544)
340 PLN02778 3,5-epimerase/4-reduc 43.7 96 0.0021 29.0 7.4 33 72-110 7-39 (298)
341 KOG2452 Formyltetrahydrofolate 43.6 40 0.00087 32.9 4.7 58 75-143 1-60 (881)
342 COG2984 ABC-type uncharacteriz 43.6 1.2E+02 0.0025 28.6 7.5 95 285-398 145-248 (322)
343 PRK10569 NAD(P)H-dependent FMN 43.5 59 0.0013 28.1 5.5 39 75-113 1-40 (191)
344 PF00072 Response_reg: Respons 43.5 1.4E+02 0.003 22.4 7.3 96 323-428 9-112 (112)
345 PRK13230 nitrogenase reductase 43.3 41 0.0009 31.1 4.8 36 75-114 2-39 (279)
346 PF10093 DUF2331: Uncharacteri 42.7 3.3E+02 0.0071 26.5 10.7 104 257-386 168-286 (374)
347 PF06564 YhjQ: YhjQ protein; 42.4 50 0.0011 29.8 4.9 38 75-113 2-39 (243)
348 COG0552 FtsY Signal recognitio 42.3 2.5E+02 0.0055 26.6 9.5 79 76-158 141-229 (340)
349 PRK12861 malic enzyme; Reviewe 42.2 2.4E+02 0.0052 30.4 10.5 74 305-386 186-284 (764)
350 PF08886 GshA: Glutamate-cyste 42.2 70 0.0015 30.7 5.9 83 75-163 78-165 (404)
351 COG1553 DsrE Uncharacterized c 42.1 90 0.0019 24.7 5.5 40 75-115 1-43 (126)
352 COG1646 Predicted phosphate-bi 42.0 1.2E+02 0.0026 27.0 7.0 95 277-386 20-115 (240)
353 cd00762 NAD_bind_malic_enz NAD 42.0 2.7E+02 0.0059 25.3 10.5 37 349-386 97-137 (254)
354 PRK07206 hypothetical protein; 41.9 1.1E+02 0.0023 30.2 7.8 35 73-114 1-35 (416)
355 TIGR02622 CDP_4_6_dhtase CDP-g 41.7 64 0.0014 30.9 6.1 37 72-114 2-38 (349)
356 PF10649 DUF2478: Protein of u 41.5 45 0.00097 27.8 4.1 37 350-386 86-127 (159)
357 PRK01713 ornithine carbamoyltr 41.5 1.8E+02 0.004 27.8 8.8 78 73-157 155-232 (334)
358 PRK06719 precorrin-2 dehydroge 41.5 59 0.0013 27.1 5.0 32 73-111 12-43 (157)
359 TIGR01658 EYA-cons_domain eyes 41.4 82 0.0018 28.3 5.8 55 289-358 216-270 (274)
360 PRK03767 NAD(P)H:quinone oxido 41.4 55 0.0012 28.5 5.0 38 75-113 2-40 (200)
361 PRK01438 murD UDP-N-acetylmura 41.0 1.8E+02 0.0039 29.3 9.4 72 73-158 15-86 (480)
362 COG1087 GalE UDP-glucose 4-epi 40.8 86 0.0019 29.2 6.1 62 87-156 7-73 (329)
363 PF13614 AAA_31: AAA domain; P 40.8 68 0.0015 26.3 5.4 38 77-115 3-40 (157)
364 PF00389 2-Hacid_dh: D-isomer 40.7 1.8E+02 0.004 23.1 7.7 53 340-403 20-74 (133)
365 TIGR01761 thiaz-red thiazoliny 40.7 1.9E+02 0.004 27.8 8.8 90 269-387 2-95 (343)
366 TIGR03677 rpl7ae 50S ribosomal 40.7 1.8E+02 0.0039 22.8 7.3 79 283-378 29-108 (117)
367 PRK12595 bifunctional 3-deoxy- 40.7 3.5E+02 0.0075 26.2 12.6 99 275-388 122-231 (360)
368 PRK10834 vancomycin high tempe 40.6 2.5E+02 0.0053 25.3 8.9 78 306-386 80-165 (239)
369 PF03308 ArgK: ArgK protein; 40.5 86 0.0019 28.6 6.0 77 87-163 40-134 (266)
370 PF03807 F420_oxidored: NADP o 40.5 77 0.0017 23.4 5.1 60 90-159 8-70 (96)
371 PRK06027 purU formyltetrahydro 40.3 1.4E+02 0.003 27.8 7.7 73 73-158 88-173 (286)
372 COG2894 MinD Septum formation 40.2 1.3E+02 0.0028 26.8 6.7 39 76-116 3-43 (272)
373 PRK13932 stationary phase surv 40.2 69 0.0015 29.2 5.5 40 73-116 4-43 (257)
374 KOG1838 Alpha/beta hydrolase [ 40.2 54 0.0012 32.0 5.0 39 75-113 125-163 (409)
375 COG0541 Ffh Signal recognition 40.1 2.4E+02 0.0052 27.9 9.3 80 76-159 102-191 (451)
376 TIGR02853 spore_dpaA dipicolin 40.1 2.1E+02 0.0046 26.6 8.9 26 88-113 8-33 (287)
377 PRK07714 hypothetical protein; 40.0 1.6E+02 0.0035 22.2 7.5 78 283-378 21-98 (100)
378 PRK01966 ddl D-alanyl-alanine 40.0 51 0.0011 31.5 5.0 43 72-114 1-45 (333)
379 PRK13185 chlL protochlorophyll 40.0 50 0.0011 30.3 4.8 28 86-113 10-39 (270)
380 PRK06395 phosphoribosylamine-- 40.0 1.2E+02 0.0026 30.2 7.7 73 73-158 1-73 (435)
381 TIGR01281 DPOR_bchL light-inde 39.3 48 0.001 30.3 4.6 35 75-113 1-37 (268)
382 TIGR01162 purE phosphoribosyla 38.7 2.3E+02 0.005 23.6 10.8 122 312-442 3-139 (156)
383 COG0673 MviM Predicted dehydro 38.7 2.2E+02 0.0049 26.9 9.3 55 324-386 39-95 (342)
384 PLN03129 NADP-dependent malic 38.5 4.7E+02 0.01 27.1 11.4 80 305-386 318-432 (581)
385 COG4088 Predicted nucleotide k 38.5 36 0.00078 29.8 3.2 32 81-112 6-37 (261)
386 PLN03007 UDP-glucosyltransfera 38.5 61 0.0013 32.8 5.5 39 74-114 5-43 (482)
387 TIGR00670 asp_carb_tr aspartat 38.3 2.5E+02 0.0054 26.4 9.1 75 73-157 149-223 (301)
388 PRK06932 glycerate dehydrogena 38.3 2.6E+02 0.0056 26.4 9.3 77 308-400 147-237 (314)
389 PRK04020 rps2P 30S ribosomal p 38.1 2.8E+02 0.006 24.3 10.4 146 282-461 49-198 (204)
390 PRK11889 flhF flagellar biosyn 38.1 3.6E+02 0.0079 26.6 10.1 40 74-115 241-280 (436)
391 cd02040 NifH NifH gene encodes 38.0 50 0.0011 30.2 4.5 36 75-114 2-39 (270)
392 PRK05569 flavodoxin; Provision 37.9 78 0.0017 25.5 5.2 37 75-112 2-38 (141)
393 PRK00652 lpxK tetraacyldisacch 37.8 1.7E+02 0.0037 27.8 8.0 33 84-116 57-91 (325)
394 PRK08410 2-hydroxyacid dehydro 37.6 3E+02 0.0064 26.0 9.6 77 308-400 145-236 (311)
395 PLN03050 pyridoxine (pyridoxam 37.6 68 0.0015 29.1 5.1 34 75-111 61-94 (246)
396 CHL00072 chlL photochlorophyll 37.6 52 0.0011 30.7 4.5 36 75-114 1-38 (290)
397 PF04321 RmlD_sub_bind: RmlD s 37.5 37 0.00081 31.5 3.6 33 75-113 1-33 (286)
398 PRK12562 ornithine carbamoyltr 37.5 2.4E+02 0.0053 26.9 8.9 78 74-158 156-233 (334)
399 cd03145 GAT1_cyanophycinase Ty 37.4 2.9E+02 0.0063 24.4 10.7 85 308-400 29-128 (217)
400 PRK04169 geranylgeranylglycery 37.3 1.3E+02 0.0029 26.9 6.7 74 276-365 11-85 (232)
401 PRK13235 nifH nitrogenase redu 37.3 53 0.0012 30.2 4.5 36 75-114 2-39 (274)
402 TIGR00337 PyrG CTP synthase. C 37.1 4.7E+02 0.01 26.7 21.8 161 203-386 205-376 (525)
403 COG4567 Response regulator con 37.1 1.7E+02 0.0036 24.3 6.5 107 307-430 8-124 (182)
404 KOG2884 26S proteasome regulat 37.0 2.9E+02 0.0064 24.3 12.7 65 357-438 168-234 (259)
405 PLN02928 oxidoreductase family 36.6 2.8E+02 0.006 26.7 9.4 40 347-386 217-259 (347)
406 TIGR00036 dapB dihydrodipicoli 36.6 1.3E+02 0.0028 27.7 6.8 37 348-386 60-96 (266)
407 PF01012 ETF: Electron transfe 36.6 1.9E+02 0.0042 24.0 7.5 88 286-386 18-118 (164)
408 cd01016 TroA Metal binding pro 36.5 1.5E+02 0.0034 27.3 7.4 90 351-450 45-142 (276)
409 PRK02102 ornithine carbamoyltr 36.4 2.7E+02 0.0057 26.6 9.0 78 73-157 154-231 (331)
410 PF00862 Sucrose_synth: Sucros 36.2 1.7E+02 0.0038 29.4 7.8 39 75-113 273-334 (550)
411 PLN02285 methionyl-tRNA formyl 36.1 1.5E+02 0.0032 28.4 7.3 83 73-158 5-101 (334)
412 PRK04523 N-acetylornithine car 36.1 3.3E+02 0.0071 26.1 9.6 66 91-158 186-252 (335)
413 PRK07232 bifunctional malic en 36.0 4E+02 0.0088 28.7 11.0 74 305-386 182-280 (752)
414 PRK12825 fabG 3-ketoacyl-(acyl 35.9 1.4E+02 0.0031 26.4 7.1 37 72-114 4-40 (249)
415 PRK06522 2-dehydropantoate 2-r 35.9 1.1E+02 0.0023 28.5 6.5 32 75-113 1-32 (304)
416 PF00885 DMRL_synthase: 6,7-di 35.6 1.4E+02 0.003 24.5 6.1 42 72-113 1-45 (144)
417 cd02032 Bchl_like This family 35.6 57 0.0012 29.8 4.5 35 75-113 1-37 (267)
418 PF14597 Lactamase_B_5: Metall 35.4 96 0.0021 26.5 5.1 45 282-334 154-198 (199)
419 PRK09273 hypothetical protein; 35.4 55 0.0012 28.6 3.9 39 75-113 1-39 (211)
420 COG1671 Uncharacterized protei 35.4 84 0.0018 25.8 4.6 82 323-415 12-98 (150)
421 PF03446 NAD_binding_2: NAD bi 35.3 2.6E+02 0.0056 23.2 8.4 68 74-161 1-68 (163)
422 TIGR01754 flav_RNR ribonucleot 35.3 79 0.0017 25.6 4.8 34 75-109 1-34 (140)
423 cd01018 ZntC Metal binding pro 35.0 1.6E+02 0.0034 27.0 7.2 88 351-450 46-153 (266)
424 PRK05579 bifunctional phosphop 35.0 75 0.0016 31.2 5.3 40 72-114 4-43 (399)
425 CHL00175 minD septum-site dete 34.9 85 0.0019 28.9 5.5 40 75-114 15-54 (281)
426 PRK05447 1-deoxy-D-xylulose 5- 34.8 2.6E+02 0.0056 27.3 8.7 93 268-387 25-120 (385)
427 TIGR01425 SRP54_euk signal rec 34.7 3.4E+02 0.0073 27.0 9.7 84 73-160 99-192 (429)
428 PRK12745 3-ketoacyl-(acyl-carr 34.7 2.2E+02 0.0047 25.5 8.2 33 76-113 3-35 (256)
429 cd01017 AdcA Metal binding pro 34.7 1.4E+02 0.0031 27.5 7.0 89 351-450 47-154 (282)
430 PF00201 UDPGT: UDP-glucoronos 34.4 15 0.00032 37.4 0.4 23 91-113 14-36 (500)
431 PF00448 SRP54: SRP54-type pro 34.4 3.1E+02 0.0067 23.8 10.1 80 76-159 3-92 (196)
432 TIGR00853 pts-lac PTS system, 34.3 1.1E+02 0.0024 22.9 5.0 40 72-113 1-40 (95)
433 TIGR03029 EpsG chain length de 34.3 92 0.002 28.6 5.6 39 75-113 103-141 (274)
434 PRK05562 precorrin-2 dehydroge 34.2 3.3E+02 0.0071 24.3 8.6 69 74-158 25-93 (223)
435 PF02630 SCO1-SenC: SCO1/SenC; 34.2 2.9E+02 0.0062 23.4 8.8 87 268-361 51-138 (174)
436 PRK02645 ppnK inorganic polyph 34.1 77 0.0017 29.8 5.0 40 72-112 1-40 (305)
437 COG1056 NadR Nicotinamide mono 34.0 2.7E+02 0.0059 23.6 7.7 64 271-345 4-76 (172)
438 PRK11263 cardiolipin synthase 34.0 2.4E+02 0.0051 27.9 8.5 63 74-139 219-283 (411)
439 TIGR03371 cellulose_yhjQ cellu 33.9 75 0.0016 28.5 4.9 27 88-114 14-40 (246)
440 PRK06487 glycerate dehydrogena 33.9 3.4E+02 0.0073 25.7 9.4 77 308-400 148-237 (317)
441 PRK13302 putative L-aspartate 33.8 1.4E+02 0.003 27.5 6.6 66 307-386 30-95 (271)
442 PRK09004 FMN-binding protein M 33.7 80 0.0017 25.9 4.5 35 76-111 3-37 (146)
443 PF00731 AIRC: AIR carboxylase 33.6 2.8E+02 0.006 23.0 10.4 74 311-389 4-85 (150)
444 PRK05993 short chain dehydroge 33.5 76 0.0016 29.1 5.0 23 91-113 15-37 (277)
445 PRK02261 methylaspartate mutas 33.5 1.7E+02 0.0036 23.7 6.3 42 72-115 1-42 (137)
446 PRK07308 flavodoxin; Validated 33.3 90 0.002 25.4 4.8 28 85-112 11-38 (146)
447 PRK14494 putative molybdopteri 33.3 93 0.002 27.8 5.2 36 75-111 1-36 (229)
448 PRK10037 cell division protein 33.2 80 0.0017 28.6 5.0 27 87-113 11-39 (250)
449 PRK13011 formyltetrahydrofolat 33.1 2.5E+02 0.0055 26.1 8.2 73 73-158 88-173 (286)
450 PRK03094 hypothetical protein; 33.0 28 0.00061 25.1 1.5 23 89-111 6-28 (80)
451 PRK13982 bifunctional SbtC-lik 33.0 1.7E+02 0.0037 29.4 7.4 39 72-114 68-107 (475)
452 TIGR03018 pepcterm_TyrKin exop 32.9 1.1E+02 0.0024 26.7 5.6 40 75-114 35-75 (207)
453 PRK14573 bifunctional D-alanyl 32.8 2.4E+02 0.0052 30.8 9.2 85 72-173 2-88 (809)
454 PF01297 TroA: Periplasmic sol 32.7 80 0.0017 28.7 4.9 87 352-449 43-132 (256)
455 PLN02695 GDP-D-mannose-3',5'-e 32.7 97 0.0021 30.0 5.7 35 73-113 20-54 (370)
456 TIGR00725 conserved hypothetic 32.5 87 0.0019 26.1 4.6 36 74-111 1-36 (159)
457 PRK00045 hemA glutamyl-tRNA re 32.5 5.1E+02 0.011 25.7 12.6 74 310-403 208-285 (423)
458 COG1832 Predicted CoA-binding 32.5 1E+02 0.0022 25.0 4.6 38 73-113 15-52 (140)
459 PRK10867 signal recognition pa 32.3 4.6E+02 0.01 26.1 10.2 93 66-160 90-193 (433)
460 COG0803 LraI ABC-type metal io 32.2 2.1E+02 0.0044 26.9 7.6 90 352-450 77-174 (303)
461 TIGR03010 sulf_tusC_dsrF sulfu 32.1 87 0.0019 24.4 4.3 40 76-115 1-41 (116)
462 PLN02208 glycosyltransferase f 31.9 92 0.002 31.1 5.4 37 75-113 5-41 (442)
463 PF13460 NAD_binding_10: NADH( 31.9 1.4E+02 0.0031 25.0 6.1 61 87-158 5-68 (183)
464 PF00852 Glyco_transf_10: Glyc 31.8 53 0.0012 31.6 3.7 82 350-439 221-304 (349)
465 PRK01355 azoreductase; Reviewe 31.8 1.1E+02 0.0025 26.5 5.5 40 74-113 1-45 (199)
466 PF01884 PcrB: PcrB family; I 31.8 2.3E+02 0.0049 25.4 7.2 75 275-366 10-85 (230)
467 TIGR02113 coaC_strep phosphopa 31.5 96 0.0021 26.5 4.8 24 91-114 14-37 (177)
468 TIGR01380 glut_syn glutathione 31.4 61 0.0013 30.6 3.9 40 75-114 1-41 (312)
469 TIGR00682 lpxK tetraacyldisacc 31.2 89 0.0019 29.5 4.9 36 81-116 33-70 (311)
470 PRK00779 ornithine carbamoyltr 31.1 3.3E+02 0.0072 25.6 8.7 74 73-157 151-224 (304)
471 PF05368 NmrA: NmrA-like famil 31.0 3E+02 0.0066 24.2 8.4 65 88-159 6-73 (233)
472 PF02254 TrkA_N: TrkA-N domain 31.0 2.3E+02 0.005 21.6 6.7 62 88-158 5-70 (116)
473 PRK09590 celB cellobiose phosp 30.9 98 0.0021 23.7 4.3 37 75-113 2-38 (104)
474 PRK05246 glutathione synthetas 30.9 63 0.0014 30.5 4.0 41 74-114 1-42 (316)
475 PLN03049 pyridoxine (pyridoxam 30.8 1.4E+02 0.0031 30.0 6.5 38 75-115 60-97 (462)
476 COG0482 TrmU Predicted tRNA(5- 30.8 4.7E+02 0.01 25.2 9.5 93 72-170 1-114 (356)
477 COG0281 SfcA Malic enzyme [Ene 30.8 5.3E+02 0.012 25.4 9.9 82 297-386 188-296 (432)
478 PF12273 RCR: Chitin synthesis 30.8 33 0.00073 27.5 1.8 11 16-26 1-11 (130)
479 KOG0069 Glyoxylate/hydroxypyru 30.7 1.9E+02 0.004 27.6 6.8 48 348-402 209-259 (336)
480 cd05311 NAD_bind_2_malic_enz N 30.7 3.9E+02 0.0084 23.8 9.2 35 349-386 90-124 (226)
481 PRK12743 oxidoreductase; Provi 30.7 2.3E+02 0.005 25.4 7.6 23 91-113 13-35 (256)
482 TIGR00655 PurU formyltetrahydr 30.6 3.2E+02 0.007 25.3 8.4 73 73-158 83-168 (280)
483 PRK06029 3-octaprenyl-4-hydrox 30.5 98 0.0021 26.6 4.7 37 75-115 2-40 (185)
484 COG0429 Predicted hydrolase of 30.5 83 0.0018 29.7 4.4 37 77-113 77-113 (345)
485 PRK10499 PTS system N,N'-diace 30.4 1.2E+02 0.0026 23.3 4.7 38 72-111 1-38 (106)
486 PRK13886 conjugal transfer pro 30.4 1.5E+02 0.0032 26.9 5.9 39 75-113 2-40 (241)
487 PRK13236 nitrogenase reductase 30.1 76 0.0016 29.7 4.3 37 75-114 6-44 (296)
488 PRK13232 nifH nitrogenase redu 30.1 72 0.0016 29.3 4.2 35 75-113 2-38 (273)
489 TIGR00670 asp_carb_tr aspartat 30.0 3.8E+02 0.0083 25.1 8.9 85 260-365 141-225 (301)
490 PF00205 TPP_enzyme_M: Thiamin 30.0 76 0.0016 25.5 3.8 54 310-364 14-85 (137)
491 COG1091 RfbD dTDP-4-dehydrorha 30.0 90 0.0019 28.9 4.6 47 91-157 11-57 (281)
492 COG0036 Rpe Pentose-5-phosphat 29.9 2.6E+02 0.0056 24.8 7.1 72 283-372 71-145 (220)
493 COG0773 MurC UDP-N-acetylmuram 29.9 5.8E+02 0.013 25.6 12.6 191 91-317 18-220 (459)
494 cd01019 ZnuA Zinc binding prot 29.8 2.8E+02 0.0061 25.7 8.1 90 351-450 47-162 (286)
495 KOG1192 UDP-glucuronosyl and U 29.8 79 0.0017 32.0 4.8 36 75-113 7-42 (496)
496 COG0771 MurD UDP-N-acetylmuram 29.7 3.5E+02 0.0075 27.1 8.8 87 74-174 7-95 (448)
497 PRK13789 phosphoribosylamine-- 29.5 2E+02 0.0044 28.5 7.4 73 73-158 3-76 (426)
498 TIGR01278 DPOR_BchB light-inde 29.5 6.3E+02 0.014 25.8 14.9 73 309-386 159-237 (511)
499 PRK06947 glucose-1-dehydrogena 29.4 2.4E+02 0.0051 25.1 7.4 23 91-113 13-35 (248)
500 PRK06895 putative anthranilate 29.3 85 0.0018 27.0 4.2 33 75-113 2-34 (190)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.6e-45 Score=355.77 Aligned_cols=354 Identities=18% Similarity=0.225 Sum_probs=274.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------hh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QE 143 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----------~~ 143 (477)
.+|+++.+.+..||+++++.+++++|.+.|+++++++..... .+.......|+.++.+.. ..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-------AFRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-------hhHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 579999999999999999999999999999999888854322 234445556776654432 13
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc-----cchhh-Hhh-cccccccceeeehhhHHH
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLD-YVK-HLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-----~~~~~-~~~-~~~~~~~~~~~s~~~~~~ 216 (477)
.+.+..+||+||+|+.............+.+ ..+++.|..... .+... ..+ .....+.+++.|....++
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~----~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~ 150 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGVP----ARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW 150 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCCC----eEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH
Confidence 4456689999999975433222222222221 123333332111 01111 111 223567778888777776
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+.+ .++++..++.+|+||+|.+.|.+.... +...++....++++++|+++||+.+.||++.+++|+.++.
T Consensus 151 ~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 151 LRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 554 567777899999999999887654321 1222333444567899999999999999999999999987
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
+..++ ..++++|+++|+| +..+++++.++++++.+++.|+|+.+++..+|+.||++|+||. .||||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDG-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCC-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 63221 1247999999998 6778899999999999999999999999999999999999999 999999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
|||+||+||| +++.||..|++.++.+|++++++| +++++++|.+++++++.+.++++++++.+.++|||+.
T Consensus 291 EAma~G~Pvv-------~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 291 EAMASGLPVI-------ATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHcCCCEE-------EcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999 999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011779 457 MAERIAVVLKEV 468 (477)
Q Consensus 457 ~~~~~~~~~~~~ 468 (477)
+++++.++|+++
T Consensus 362 ~~~~~~~~y~~~ 373 (374)
T TIGR03088 362 MVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 2
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.6e-43 Score=353.48 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=264.5
Q ss_pred CCCccEEEEEeccC---CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-----Eec---
Q 011779 71 FMKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISA--- 139 (477)
Q Consensus 71 ~~~~~~Il~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-----~~~--- 139 (477)
.+++|||+++.... ..||++.++.+++++|.++||+|+|++...+........... ......... ...
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVI-GSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceee-ccCCcCCccCCCceeeccCC
Confidence 37889999997543 239999999999999999999999999654431110000000 000000000 001
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh------------hHhhcccccccce
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------------DYVKHLPLVAGAM 207 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------------~~~~~~~~~~~~~ 207 (477)
.....+.+..+||+||+|++....+........ ...|++.+.|+....+... .....++..+.++
T Consensus 134 ~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~---~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 134 PRIISEVARFKPDLIHASSPGIMVFGALFYAKL---LCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH---hCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 112345566899999999865433332222221 1246777788643221110 0122335677888
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhC-CCCCCeEEEEEeecccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~il~vGrl~~~Kg~~ 286 (477)
+.|....+.+.+ ....+.+++.+||||+|.+.|.+.... ...+.++. .++++++|+++||+.+.||++
T Consensus 211 ~~S~~~~~~l~~----~~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~ 279 (465)
T PLN02871 211 VTSPALGKELEA----AGVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVGRLGAEKNLD 279 (465)
T ss_pred ECCHHHHHHHHH----cCCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeCCCchhhhHH
Confidence 888877776654 223456789999999999988654321 33455553 335678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.++++++++ ++++|+|+|+| ++.+++++++++ .+|+|+|++ +++..+|+.||++|+||
T Consensus 280 ~li~a~~~~-----------~~~~l~ivG~G-----~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 280 FLKRVMERL-----------PGARLAFVGDG-----PYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred HHHHHHHhC-----------CCcEEEEEeCC-----hHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 999998765 78999999999 788888888774 379999997 78999999999999999
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec---CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
. .|+||++++|||++|+||| +++.||+.|++.+ +.+|++++++| +++++++|.++++|++.+++|+
T Consensus 340 ~--~E~~g~~vlEAmA~G~PVI-------~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 340 E--SETLGFVVLEAMASGVPVV-------AARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred c--ccccCcHHHHHHHcCCCEE-------EcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHH
Confidence 9 9999999999999999999 9999999999998 99999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH-HHHHHHhhh
Q 011779 442 KRGYERVKEIFQEHHMAERIAV-VLKEVLKKS 472 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~-~~~~~~~~~ 472 (477)
+++++.+ ++|||+.+++++++ .|++++...
T Consensus 409 ~~a~~~~-~~fsw~~~a~~l~~~~Y~~~~~~~ 439 (465)
T PLN02871 409 AAAREEV-EKWDWRAATRKLRNEQYSAAIWFW 439 (465)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 57999999999998 799987643
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.3e-43 Score=347.99 Aligned_cols=344 Identities=18% Similarity=0.157 Sum_probs=264.7
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------- 140 (477)
||+++++.+.| ||.++++..++++|.++||+|+|++...+... .......|+.++..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~-------~~~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRV-------GIRYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCC-------CcccccCceeEEEecceeccCCccccch
Confidence 68999987766 88899999999999999999999996543211 011112344443221
Q ss_pred -----chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceee
Q 011779 141 -----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~ 209 (477)
..+......+||+||+|+.............+. ...+++++.|+..+.. ........++.++.+++.
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~--~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHART--MGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhh--cCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEe
Confidence 123444567999999998654432222222221 2257788888753211 111122234677888888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|....+.+.. ..+++..++.+||||+|.+.|.+.... .++++++|+++||+.++||++.++
T Consensus 152 s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li 212 (398)
T cd03796 152 SHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLV 212 (398)
T ss_pred cHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHH
Confidence 8877665432 345677889999999999887654321 135778999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~ 367 (477)
+|+..+.+ +.++++|+|+|+| +..+.++++++++++.++|.|+|+. +++..+|+.||++++||.
T Consensus 213 ~a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-- 278 (398)
T cd03796 213 GIIPEICK-------KHPNVRFIIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-- 278 (398)
T ss_pred HHHHHHHh-------hCCCEEEEEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--
Confidence 99998876 5689999999998 6788899999999999999999985 789999999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
.|+||++++|||+||+||| +++.||..|++.++ .+++++ .| .++++++|.++++++.....+++++++.
T Consensus 279 ~E~~g~~~~EAma~G~PVI-------~s~~gg~~e~i~~~-~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 347 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVV-------STRVGGIPEVLPPD-MILLAE-PD--VESIVRKLEEAISILRTGKHDPWSFHNR 347 (398)
T ss_pred hhccCHHHHHHHHcCCCEE-------ECCCCCchhheeCC-ceeecC-CC--HHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 9999999999999999999 99999999999775 344444 46 8999999999999877777788999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 448 VKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 448 ~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
+.++|||+.+++++.++|+++++..
T Consensus 348 ~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 348 VKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998654
No 4
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3e-43 Score=349.27 Aligned_cols=371 Identities=18% Similarity=0.190 Sum_probs=274.2
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh-----hhhh---------hhhcC
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS-----LEHK---------MWDRG 133 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-----~~~~---------~~~~g 133 (477)
|++|||+|++.+..| ||..-++..|.++|+++||+|.|+.+..+......... +... ....|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 577999999988666 99999999999999999999999998765542110000 0000 00123
Q ss_pred cEEEec--------cc--------------h-h---------hHH----HhcCCcEEEEcCcchhhHHHHHhhhCCCccc
Q 011779 134 VQVISA--------KG--------------Q-E---------TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (477)
Q Consensus 134 ~~v~~~--------~~--------------~-~---------~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (477)
+.++.+ .. . + .+. ...+|||||+|....+.....+..... ..
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~--~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGR--PA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCC--CC
Confidence 333211 00 0 0 000 135899999998655543322221111 22
Q ss_pred cceeeeeeeccccc-chh-------------------------hHhhcccccccceeeehhhHHHHHHHh-----Hhhhc
Q 011779 178 PNVLWWIHEMRGHY-FKL-------------------------DYVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLR 226 (477)
Q Consensus 178 ~~~i~~~h~~~~~~-~~~-------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~ 226 (477)
.+.+.++|+..... +.. ..+..+..++.++++|...++.+.+.. ...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 57889999864211 100 012234678888999999888776421 11223
Q ss_pred cCCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHH
Q 011779 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
....++.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3567899999999999988754321 12233567889999974 4688999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE-EEccccCCHHHHH-HhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYL-AAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~l~~~~-~~aDv~v~pS~~~~E~~ 371 (477)
++.+ .+++|+|+|+|.. ++++.+++++++++ +++ .|+|+.+++..+| +.||+||+||. +|+|
T Consensus 319 ~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~f 382 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPC 382 (485)
T ss_pred HHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCC
Confidence 8865 5789999999842 36788888888764 455 7999988899987 57999999999 9999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHH---HHhCHHHHHH
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVK---LATHVERRLT 439 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~---ll~~~~~~~~ 439 (477)
|++++|||+||+|+| ++++||+.|+|.++ .+|++++++| +++++++|.+ +++|++.+++
T Consensus 383 Gl~~lEAma~G~ppV-------vs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~ 453 (485)
T PRK14099 383 GLTQLCALRYGAVPV-------VARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRR 453 (485)
T ss_pred cHHHHHHHHCCCCcE-------EeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999 99999999999875 5899999998 9999999997 6779999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 440 MGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 440 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++++++ +.|||++++++|+++|+++++..
T Consensus 454 l~~~~~~---~~fSw~~~a~~y~~lY~~l~~~~ 483 (485)
T PRK14099 454 LQRNGMT---TDVSWRNPAQHYAALYRSLVAER 483 (485)
T ss_pred HHHHhhh---hcCChHHHHHHHHHHHHHHHhhh
Confidence 9999863 67999999999999999998643
No 5
>PLN02316 synthase/transferase
Probab=100.00 E-value=5.3e-43 Score=361.24 Aligned_cols=369 Identities=15% Similarity=0.137 Sum_probs=276.4
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhh--h------------hhhcC
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--K------------MWDRG 133 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~--~------------~~~~g 133 (477)
..+|+|++++.+..| ||...++..|+++|+++||+|.|+++..+.........+.. . ....|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 356999999987666 89999999999999999999999998765421110000000 0 01124
Q ss_pred cEEEeccch----------------h----------hHH--HhcCCcEEEEcCcchhhHHHHHhhhCC---Cccccceee
Q 011779 134 VQVISAKGQ----------------E----------TIN--TALKADLIVLNTAVAGKWLDAVLKEDV---PRVLPNVLW 182 (477)
Q Consensus 134 ~~v~~~~~~----------------~----------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 182 (477)
+.++.+... . .+. ...+|||||+|....+.... +++... .....+++.
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~-llk~~~~~~~~~~~p~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAW-LFKDHYAHYGLSKARVVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHH-HHHHhhhhhccCCCCEEE
Confidence 444322210 0 111 12589999999854443222 222211 112257899
Q ss_pred eeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc--CCCCeEEEecCCchhhhhhhhhh----------
Q 011779 183 WIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDN---------- 250 (477)
Q Consensus 183 ~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~---------- 250 (477)
++|+... ........+..++.++++|...+..+.. ...+ ...++.+|+||||.+.|.|..++
T Consensus 744 TiHnl~~--~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~ 817 (1036)
T PLN02316 744 TIHNLEF--GANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSEN 817 (1036)
T ss_pred EeCCccc--chhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchh
Confidence 9997632 1122334567889999999998877654 2222 34789999999999988765321
Q ss_pred --HHHHHHHHHHHHhhCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHH
Q 011779 251 --VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 251 --~~~~~~~~~~r~~~~~~~-~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 327 (477)
..+...+..+++++|++. +.++|+++|||.++||++.|++|+.++.+ ++++|+|+|+|+. .++++.
T Consensus 818 ~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~ 886 (1036)
T PLN02316 818 VVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQND 886 (1036)
T ss_pred hhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHH
Confidence 112234567899999984 67899999999999999999999999865 5799999999843 246788
Q ss_pred HHHHHHhcCC--CCcEEEccccCC-H-HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE
Q 011779 328 LRNYVMQKKI--QDRVHFVNKTLT-V-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI 403 (477)
Q Consensus 328 l~~~~~~~~l--~~~v~~~g~~~~-l-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~ 403 (477)
++++++++++ +++|.|.|..++ + ..+|++||+||+||. +|+||++.+|||++|+|+| ++++||++|+
T Consensus 887 l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppV-------vs~vGGL~Dt 957 (1036)
T PLN02316 887 FVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPV-------VRKTGGLFDT 957 (1036)
T ss_pred HHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeE-------EEcCCCcHhh
Confidence 9999998865 678999876644 3 379999999999999 9999999999999999999 9999999999
Q ss_pred eecC-------------CceeeecCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 404 VVNG-------------TTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 404 v~~~-------------~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
|.++ .+|+++++.| +++++++|.+++.+ ++.+..+++.+++.+.+.|||+.++++|+++|+++.
T Consensus 958 V~d~d~~~~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 958 VFDVDHDKERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 9874 6899999998 99999999999986 466677888899888899999999999999999875
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=4.6e-43 Score=349.44 Aligned_cols=368 Identities=16% Similarity=0.175 Sum_probs=269.5
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh--hhh---------hhhhcCcEEEec
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS--LEH---------KMWDRGVQVISA 139 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--~~~---------~~~~~g~~v~~~ 139 (477)
|||++++.+..| ||...++..|+++|+++||+|.|+++..+......... ... .....|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 689999987544 89999999999999999999999997765432110000 000 001245665432
Q ss_pred cch----------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhh-CCCccccceeeeeeeccccc
Q 011779 140 KGQ----------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKE-DVPRVLPNVLWWIHEMRGHY 191 (477)
Q Consensus 140 ~~~----------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~h~~~~~~ 191 (477)
... + .+.. ..+||+||+|....+.....+... .......++++++|+.....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g 160 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQG 160 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCC
Confidence 110 0 1111 148999999985554432222211 11111257899999864210
Q ss_pred -ch---------------hh----------HhhcccccccceeeehhhHHHHHHH-----hHhhhccCCCCeEEEecCCc
Q 011779 192 -FK---------------LD----------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNS 240 (477)
Q Consensus 192 -~~---------------~~----------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~ngvd 240 (477)
+. .. ....+..++.++++|...++.+... +...++.+..++.+|+||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid 240 (466)
T PRK00654 161 LFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGID 240 (466)
T ss_pred cCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCC
Confidence 10 00 0112467788899998888776542 11123445678999999999
Q ss_pred hhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 241 KELMEVAEDNV-----------AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 241 ~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
.+.|.|..++. .+...++.+++++|+++ +.++|+++||+.++||++.+++|++++.+ .+
T Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~ 311 (466)
T PRK00654 241 YDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QG 311 (466)
T ss_pred ccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cC
Confidence 99887653210 12234567899999985 67899999999999999999999999865 47
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++|+|+|+|.. ++.+++++++++++ +++. +.|+.++ +..+|++||++|+||. +|+||++++|||+||+|+|
T Consensus 312 ~~lvivG~g~~---~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 312 GQLVLLGTGDP---ELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPI 384 (466)
T ss_pred CEEEEEecCcH---HHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEE
Confidence 99999999842 36788899998886 4565 4677644 5688999999999999 9999999999999999999
Q ss_pred eeccccccccCCCceEEeecC------CceeeecCCCCCHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 387 LQKCLYQGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
++++||+.|++.++ .+|++++++| +++++++|.++++ +++.+.+|++++.+ +.|||+++
T Consensus 385 -------~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~ 452 (466)
T PRK00654 385 -------VRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKS 452 (466)
T ss_pred -------EeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHH
Confidence 99999999999888 8999999998 9999999999886 77778888887754 68999999
Q ss_pred HHHHHHHHHHHHh
Q 011779 458 AERIAVVLKEVLK 470 (477)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (477)
+++|+++|+++++
T Consensus 453 a~~~~~lY~~~~~ 465 (466)
T PRK00654 453 AEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=7e-43 Score=344.58 Aligned_cols=344 Identities=20% Similarity=0.221 Sum_probs=264.7
Q ss_pred CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------------------hh
Q 011779 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------------------QE 143 (477)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------------------~~ 143 (477)
.||+++++.+|+++|.++||+|+|+|......... ......|++++.... .+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPP------VVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------ccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999653321110 011123555543310 00
Q ss_pred hHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------ch---h--hHhhcccccccce
Q 011779 144 TINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FK---L--DYVKHLPLVAGAM 207 (477)
Q Consensus 144 ~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~~---~--~~~~~~~~~~~~~ 207 (477)
.+.+ ..+||+||+|....+. ....... . ...+++.++|+..... .. . .....+..++.++
T Consensus 93 ~~~~~~~~~~Diih~h~~~~~~-~~~~~~~-~--~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi 168 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLSGQ-VGWLLRD-R--WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLI 168 (405)
T ss_pred HHhhccCCCCCeEEechHHHHH-HHHHHHH-h--cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEE
Confidence 1111 2479999999744332 2222221 1 1246788888753100 00 0 0122446777888
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ 287 (477)
+.|....+.+.+ .++.+..++.+||||+|.+.|.+.. +...++++++++++++|+++||+.+.||++.
T Consensus 169 ~~s~~~~~~~~~----~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 169 ANTDEEARDLVR----HYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ECCHHHHHHHHH----HcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHH
Confidence 887776665543 5577778999999999998876532 3456778898888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCcCc--eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEc
Q 011779 288 FLHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~--~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~p 363 (477)
+++|+.++.+ +.++ ++|+|+|++.....++.++++++++++++.++|.|+|+. +++..+|+.||++++|
T Consensus 237 li~a~~~l~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 309 (405)
T TIGR03449 237 LLRAVAELLD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVP 309 (405)
T ss_pred HHHHHHHHHh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEEC
Confidence 9999999876 4465 999999964322214678899999999999999999985 7899999999999999
Q ss_pred CCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 364 SQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 364 S~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
|. .|+||++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|.+++++++.+++|+++
T Consensus 310 s~--~E~~g~~~lEAma~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 310 SY--NESFGLVAMEAQACGTPVV-------AARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred CC--CCCcChHHHHHHHcCCCEE-------EecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99 9999999999999999999 999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 444 GYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++.+ ++|||+.+++++.++|.+++.
T Consensus 379 ~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 379 AVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 99887 679999999999999998763
No 8
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=8.2e-43 Score=353.19 Aligned_cols=353 Identities=16% Similarity=0.176 Sum_probs=260.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCc--------------EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT--------------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 141 (477)
||+++.+....||+|+++.+|+.+|.++++ +|.+++........ .+...+...|+++..+..
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~----~~~~~L~~~Gv~v~~l~~ 358 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD----FFAATLADAGIPVSVYSD 358 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc----hHHHHHHhCCCeEEEecc
Confidence 699999999999999999999999999854 45555322111100 123345556666643311
Q ss_pred ---------------------------------hhhHHHhcCCcEEEEcCcchhhHHHHHhh-hCCCccccceeeeeeec
Q 011779 142 ---------------------------------QETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 142 ---------------------------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~ 187 (477)
...+.+..+|||||+|+.....+...+.. .+. +.++.+.|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gv----PvIv~t~h~~ 434 (694)
T PRK15179 359 MQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGV----PRIVLSVRTM 434 (694)
T ss_pred CCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCC----CEEEEEeCCC
Confidence 12345667999999998665443222221 222 2233345653
Q ss_pred ccccchhh----Hh---hccccccc--ceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHH
Q 011779 188 RGHYFKLD----YV---KHLPLVAG--AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (477)
Q Consensus 188 ~~~~~~~~----~~---~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (477)
........ +. ..+...+. ++++|....+. +.+.++++.+++.|||||+|.+.|.+.+... ..+.
T Consensus 435 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~----l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~---~~~~ 507 (694)
T PRK15179 435 PPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHR----YADWLGVDERRIPVVYNGLAPLKSVQDDACT---AMMA 507 (694)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHH----HHHHcCCChhHEEEECCCcCHHhcCCCchhh---HHHH
Confidence 22111111 11 11122233 23334333333 3346788888999999999988775432210 0011
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (477)
.++ ...+.+.++|+++||+.+.||++.+++|+.++.+ +.|+++|+|+|+| ++.+.++++++++++.
T Consensus 508 ~~~--~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QFD--ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGG-----PLLESVREFAQRLGMG 573 (694)
T ss_pred hhc--cccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccC-----cchHHHHHHHHHcCCC
Confidence 111 2234567899999999999999999999999876 5689999999999 6788999999999999
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~ 418 (477)
++|+|+|+++++..+|+.+|++|+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|++++++|.
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVV-------at~~gG~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVV-------TTLAGGAGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEE-------EECCCChHHHccCCCCEEEeCCCCC
Confidence 999999999999999999999999999 9999999999999999999 9999999999999999999999885
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+.++++++|.+++.+......+++++++++.++|||+.+++++.++|+
T Consensus 645 ~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 645 TAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 567999999999887766778889999999999999999999999995
No 9
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.2e-42 Score=350.10 Aligned_cols=377 Identities=14% Similarity=0.103 Sum_probs=281.0
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh-----------hh--------
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----------HK-------- 128 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----------~~-------- 128 (477)
.+.|+|+|++.+..| ||..-++..|.++|+++||+|.|+++.++.........+. ..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 456899999988666 9999999999999999999999999877644311110000 00
Q ss_pred hhhcCcEEEeccc------h-------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhhC--CCcc
Q 011779 129 MWDRGVQVISAKG------Q-------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRV 176 (477)
Q Consensus 129 ~~~~g~~v~~~~~------~-------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~ 176 (477)
....|++++.+.. . + .+.. ..+|||||+|....+.+...+.... -...
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~ 638 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFN 638 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCC
Confidence 0112455542210 0 0 1111 2589999999876655322222110 0112
Q ss_pred ccceeeeeeeccccc-ch----------hhH------------------hhcccccccceeeehhhHHHHHHH----hHh
Q 011779 177 LPNVLWWIHEMRGHY-FK----------LDY------------------VKHLPLVAGAMIDSHVTAEYWKNR----TRE 223 (477)
Q Consensus 177 ~~~~i~~~h~~~~~~-~~----------~~~------------------~~~~~~~~~~~~~s~~~~~~~~~~----~~~ 223 (477)
..++++++|+....- +. ... +..+.+++.++++|...+..+... +..
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~ 718 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQD 718 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHH
Confidence 257899999864211 00 000 012236788889999988877642 122
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCC---CCeEEEEEeecccCCCHHHHH
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~---~~~~il~vGrl~~~Kg~~~ll 289 (477)
.++....++.+|+||||.+.|.|..++ ..+...+..+++++|++. +.++|+++||+.++||++.++
T Consensus 719 ~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLl 798 (977)
T PLN02939 719 TLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIR 798 (977)
T ss_pred HhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHH
Confidence 345677899999999999999876432 122334678999999984 468999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC--HHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~--l~~~~~~aDv~v~pS~~~ 367 (477)
+|+..+.+ ++++|+|+|+|+.. .+.+.++++++++++.++|.|+|..++ ...+|++||+||+||+
T Consensus 799 eA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr-- 865 (977)
T PLN02939 799 HAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM-- 865 (977)
T ss_pred HHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC--
Confidence 99998864 67899999998421 356888999999999899999998754 3579999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec---------CCceeeecCCCCCHHHHHHHHHHHHh----CH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN---------GTTGLLHPVGKEGITPLAKNIVKLAT----HV 434 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~---------~~~G~l~~~~d~~~~~la~~i~~ll~----~~ 434 (477)
+|+||++++|||+||+|+| ++++||+.|+|.+ +.+|++++++| +++++++|.+++. |+
T Consensus 866 ~EPfGLvqLEAMAyGtPPV-------Vs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dp 936 (977)
T PLN02939 866 FEPCGLTQMIAMRYGSVPI-------VRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKP 936 (977)
T ss_pred ccCCcHHHHHHHHCCCCEE-------EecCCCCcceeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCH
Confidence 9999999999999999999 9999999999875 57999999998 9999999998875 79
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
+.+++|++++. .+.|||+.++++|+++|++++....
T Consensus 937 e~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 937 EVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999988764 3779999999999999999987654
No 10
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=8.6e-43 Score=340.72 Aligned_cols=349 Identities=18% Similarity=0.201 Sum_probs=266.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhc------------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDR------------------ 132 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~------------------ 132 (477)
|+|+++...++. -.|+++.+-..+|.++||+|.+++...+..... ..+.+.......
T Consensus 1 m~ia~~~~~~P~-~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPL-SSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCc-cchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 689999998874 457999999999999999999999554432100 000000000000
Q ss_pred --CcE----EEeccc------h---------hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc
Q 011779 133 --GVQ----VISAKG------Q---------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (477)
Q Consensus 133 --g~~----v~~~~~------~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~ 191 (477)
+.. ....+. . ....+..+||+||+|....+.....+..... ...+++.+.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~--~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGV--LRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCC--CCCCeEEEEccccccc
Confidence 000 000000 0 0111346899999998655443333222111 1134577888753221
Q ss_pred ------chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhC
Q 011779 192 ------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265 (477)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~ 265 (477)
+...+...+...+.+++.|....+.+. .+|.+.+++.+||||+|.+.|.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-----~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-----KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 112344556778888888887776654 347778899999999999987643211
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.+++.|+++||+.+.||++.+++|++.+.+ +.++++|+|+|+| +++++++++++++++.++|.|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999999876 5689999999999 78899999999999999999999
Q ss_pred cc--CCHHHHHHhcCEEEEcCCC----CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
++ +++.++|+.||++|+||.. ..||||++++|||++|+||| +|+.||++|++.++.+|++++++|
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI-------~t~~~g~~E~v~~~~~G~lv~~~d-- 356 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVV-------STLHSGIPELVEADKSGWLVPEND-- 356 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEE-------EeCCCCchhhhcCCCceEEeCCCC--
Confidence 86 7899999999999999972 03999999999999999999 999999999999999999999998
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 420 ITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 420 ~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++++++|.++++ |++.+++|++++++.+.++|+|+.+++++.++|++
T Consensus 357 ~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 357 AQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999 99999999999999999999999999999999976
No 11
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=7.7e-43 Score=344.55 Aligned_cols=357 Identities=13% Similarity=0.086 Sum_probs=270.2
Q ss_pred cEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh--H--HhhhhhhhhhcCcEEEeccch------
Q 011779 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE--V--IYSLEHKMWDRGVQVISAKGQ------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~--~~~~~~~~~~~g~~v~~~~~~------ 142 (477)
|||++++..+.| ||++.++.+|+++|.++||+|+|+|......... . ...........|+++++.+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 789999987666 9999999999999999999999999653211100 0 000001111346666543211
Q ss_pred --h--------------hHHH--hcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccc------cch----
Q 011779 143 --E--------------TINT--ALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGH------YFK---- 193 (477)
Q Consensus 143 --~--------------~~~~--~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~---- 193 (477)
+ .+.+ ..+||+||+|.+..... .....+... ..++++++|+.... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~---~~~~v~~~~d~~~~~~~~~~~~~~~~~ 157 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLS---GARTWLHIQDYEVDAAFGLGLLKGGKV 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhh---CCCEEEEeccCCHHHHHHhCCccCcHH
Confidence 0 0111 16899999998543221 121222211 13566777764311 000
Q ss_pred -----hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 011779 194 -----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (477)
Q Consensus 194 -----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (477)
......++.++.+++.|....+.+.+ ++.+..++.+||||+|.+.|.+.... .+..+++++++++
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~-----~~~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKARE-----KGVAAEKVIFFPNWSEVARFQPVADA-----DVDALRAQLGLPD 227 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHHH-----cCCCcccEEEECCCcCHhhcCCCCcc-----chHHHHHHcCCCC
Confidence 01223356788888888888877653 46677889999999999887654221 1345788899988
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
++++|+|+|++.+.||++.+++|++++. +.++++|+|+|+| +..++++++++++++. +|.|+|++
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~-~v~f~G~~~ 293 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQG-----GGKARLEKMAQCRGLP-NVHFLPLQP 293 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCC-----hhHHHHHHHHHHcCCC-ceEEeCCCC
Confidence 8899999999999999999999998773 3478999999999 6788999999999986 79999985
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCc----ccHHHHHHHHcCCCEEeeccccccccCCC--ceEEeecCCceeeecCCCCCH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLLQKCLYQGTAAGG--TTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~----~g~~~lEAma~G~PvI~~~~~~~~~~~gg--~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+++..+|++||++++||. .|+ +|.+++|||++|+||| +++.|| ..+++. ++|++++++| +
T Consensus 294 ~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi-------~s~~~g~~~~~~i~--~~G~~~~~~d--~ 360 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVV-------ATAEPGTELGQLVE--GIGVCVEPES--V 360 (412)
T ss_pred HHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEE-------EEeCCCchHHHHHh--CCcEEeCCCC--H
Confidence 689999999999999998 788 5777999999999999 998876 457775 5999999998 9
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
++++++|.++++|++.+++|++++++.++++|||+.+++++.++|++++..
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998764
No 12
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.4e-42 Score=343.95 Aligned_cols=354 Identities=16% Similarity=0.148 Sum_probs=247.2
Q ss_pred CchhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------------------hh
Q 011779 87 SGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------------------QE 143 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------------------~~ 143 (477)
||++.++.+|+++|.++|| +|+|+|...+.......+.....-...|++++..+. ..
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADNLL 105 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHH
Confidence 8999999999999999997 999999543221000000000011134666654421 11
Q ss_pred hHHHh--cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------h-------------hHhhc
Q 011779 144 TINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------L-------------DYVKH 199 (477)
Q Consensus 144 ~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~-------------~~~~~ 199 (477)
...+. .+||+||+|+...+.. ........ ..|++.+.|+....... . .....
T Consensus 106 ~~~~~~~~~~DvIH~h~~~~~~~-~~~~~~~~---~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T TIGR02472 106 QHLRQQGHLPDLIHAHYADAGYV-GARLSRLL---GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEET 181 (439)
T ss_pred HHHHHcCCCCCEEEEcchhHHHH-HHHHHHHh---CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHH
Confidence 12222 3699999998544332 22222211 24678889964321100 0 01123
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
+...+.+++.+.. .+.+.+....+++.+++.+||||+|.+.|.+......... ....+++++.+++.++|+++||+
T Consensus 182 ~~~ad~ii~~s~~---~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vGrl 257 (439)
T TIGR02472 182 LAHASLVITSTHQ---EIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSE-IDNLLAPFLKDPEKPPILAISRP 257 (439)
T ss_pred HHhCCEEEECCHH---HHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchh-HHHHHHhhccccCCcEEEEEcCC
Confidence 4456666765432 2222222223677889999999999998876432211111 11223345556677899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc------hHHHHHHHHHHHhcCCCCcEEEccc--cCCHH
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNK--TLTVA 351 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~------~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~ 351 (477)
.+.||++.+++|++.+.+ ++ ..+++. +++|+|+... ..+.+++.++++++++.++|+|+|+ .+++.
T Consensus 258 ~~~Kg~~~li~A~~~l~~-~~----~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~ 331 (439)
T TIGR02472 258 DRRKNIPSLVEAYGRSPK-LQ----EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVP 331 (439)
T ss_pred cccCCHHHHHHHHHhChh-hh----hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHH
Confidence 999999999999986432 11 113333 3568764321 1133456677889999999999997 48899
Q ss_pred HHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHH
Q 011779 352 PYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 427 (477)
Q Consensus 352 ~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i 427 (477)
.+|+.| |+||+||. .|+||++++||||||+||| +|+.||+.|++.++.+|++++++| +++++++|
T Consensus 332 ~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV-------~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i 400 (439)
T TIGR02472 332 ELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIV-------ATDDGGPRDIIANCRNGLLVDVLD--LEAIASAL 400 (439)
T ss_pred HHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEE-------EeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHH
Confidence 999987 99999999 9999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 428 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.++++|++.+++|++++++++.++|||+.++++|++++
T Consensus 401 ~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 401 EDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998876
No 13
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.3e-42 Score=335.33 Aligned_cols=347 Identities=20% Similarity=0.241 Sum_probs=268.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--e--------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S-------------- 138 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~-------------- 138 (477)
|||+++++. ..||.++++.+++++|.+.||+|+|++...+..... ...++.+. +
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE---------YSPNIFFHEVEVPQYPLFQYPPYDL 70 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh---------hccCeEEEEecccccchhhcchhHH
Confidence 688888742 349999999999999999999999999654321110 00111110 0
Q ss_pred --ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeee
Q 011779 139 --AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 139 --~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s 210 (477)
.....+..+..+||+||+|.+....+..............++++++|+..... +.......++.++.+++.|
T Consensus 71 ~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 71 ALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcC
Confidence 01112334567999999997543222222111111112357788888643211 1122334456788888888
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .+ ....++.+||||+|...+.+.. ....+++++.++++++++++||+.+.||++.+++
T Consensus 151 ~~~~~~~~~----~~-~~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 151 ESLRQETYE----LF-DITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred HHHHHHHHH----hc-CCcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHH
Confidence 887776654 23 2456799999999988765432 2345677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
++.++.+ + ++++|+++|.| +..+.+++.++++++.++|.|+|+.+++..+|+.||++|+||. .|+
T Consensus 218 a~~~l~~-------~-~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~ 282 (371)
T cd04962 218 IFAKVRK-------E-VPARLLLVGDG-----PERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KES 282 (371)
T ss_pred HHHHHHh-------c-CCceEEEEcCC-----cCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCC
Confidence 9998864 2 56899999998 5677889999999998999999999999999999999999998 999
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
||++++|||++|+||| +++.||..|++.++.+|++++++| ++++++++.++++|++.+++|++++++.+.+
T Consensus 283 ~~~~~~EAma~g~PvI-------~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (371)
T cd04962 283 FGLAALEAMACGVPVV-------ASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAE 353 (371)
T ss_pred CccHHHHHHHcCCCEE-------EeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988 9999999999999999999999999999889
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 011779 451 IFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 451 ~fs~~~~~~~~~~~~~~~ 468 (477)
+|||+.+++++.++|+++
T Consensus 354 ~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 354 RFDSERIVPQYEALYRRL 371 (371)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 999999999999999863
No 14
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.4e-41 Score=326.71 Aligned_cols=352 Identities=19% Similarity=0.209 Sum_probs=253.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHH----HhCCc--------EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLL----RGVGT--------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-- 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L----~~~G~--------~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-- 141 (477)
.+++++.++..||+|+.+.+++-++ .+.|- .|.++|..-.+... ...+.......++.+..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELR--QDFFLKEVLEEQVEVLEIAKIT 240 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccC--cchhHHHHHhcCCceEEeeccc
Confidence 4899999999999999988555544 44443 57777733211110 11233344445555532211
Q ss_pred -------------------------------hhhHHHhcCCcEEEEcCcchhhHH-HHHhhhCCCccccceeeeeeeccc
Q 011779 142 -------------------------------QETINTALKADLIVLNTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRG 189 (477)
Q Consensus 142 -------------------------------~~~~~~~~~~DiV~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~ 189 (477)
...+.+..+||+||+|...+.... ..++..+. +.++.+.|....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagv----pviv~~~h~~~~ 316 (578)
T PRK15490 241 GNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGV----PRIQLGLRGLPP 316 (578)
T ss_pred hhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCC----CEEEEeecccCC
Confidence 124556789999999985543321 12222233 223444554222
Q ss_pred ccchhhHhh---c-------ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHH
Q 011779 190 HYFKLDYVK---H-------LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREH 259 (477)
Q Consensus 190 ~~~~~~~~~---~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~ 259 (477)
......... . ....+ .++.+..+++. +.+.++++++|+.+||||+|.+.|.+.... ...
T Consensus 317 ~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~----l~~~lgip~~KI~VIyNGVD~~rf~p~~~~------~~~ 385 (578)
T PRK15490 317 VVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRH----YADWLKLEAKHFQVVYNGVLPPSTEPSSEV------PHK 385 (578)
T ss_pred cchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHH----HHHHhCCCHHHEEEEeCCcchhhcCccchh------hHH
Confidence 111111100 0 11112 44444444444 334668899999999999999887764321 112
Q ss_pred HHH--hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 260 VRE--SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 260 ~r~--~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
.++ ..+++++.++|+++||+.+.||++.+++++.++.+ +.|+++|+|+|+| +++++++++++++++
T Consensus 386 ~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG-----~~~eeLk~la~elgL 453 (578)
T PRK15490 386 IWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDG-----DLRAEAQKRAEQLGI 453 (578)
T ss_pred HHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCc-----hhHHHHHHHHHHcCC
Confidence 222 23445667889999999999999999999998876 5689999999999 788999999999999
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
.++|+|+|+.+++..+|+.+|+||+||. +||||++++|||++|+||| +++.||..|+|.++.+|++++++|
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVV-------ATdvGG~~EiV~dG~nG~LVp~~D 524 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVI-------STPAGGSAECFIEGVSGFILDDAQ 524 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEE-------EeCCCCcHHHcccCCcEEEECCCC
Confidence 9999999999999999999999999999 9999999999999999999 999999999999999999999988
Q ss_pred CCHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNI---VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 418 ~~~~~la~~i---~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
++++++++ ..+..+.+.+..|+++++++++++|||+.++++|.++|..
T Consensus 525 --~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 525 --TVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 88888876 4455555566789999999999999999999999999975
No 15
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.2e-41 Score=339.02 Aligned_cols=365 Identities=19% Similarity=0.177 Sum_probs=266.9
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh----------hh--------hhhhhc
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS----------LE--------HKMWDR 132 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----------~~--------~~~~~~ 132 (477)
|||++++.+..| ||...++..|+++|+++||+|.|+++..+......... +. ......
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 689999988555 89999999999999999999999997766432211000 00 001112
Q ss_pred CcEEEeccch-------------------h---------hHH--HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceee
Q 011779 133 GVQVISAKGQ-------------------E---------TIN--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (477)
Q Consensus 133 g~~v~~~~~~-------------------~---------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (477)
|++++.+... + .+. ...+||+||+|....+.... .++........++++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~-~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPA-LLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHH-HHHhhccCCCCCEEE
Confidence 4444321100 0 011 12589999999865544322 222221110257889
Q ss_pred eeeecccc-cchhh-------------------------HhhcccccccceeeehhhHHHHHHH-----hHhhhccCCCC
Q 011779 183 WIHEMRGH-YFKLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPD 231 (477)
Q Consensus 183 ~~h~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~ 231 (477)
++|+.... .+... ....+..++.++++|...++.+... +...+..+..+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99986421 11100 0123457788888888877766532 00011224578
Q ss_pred eEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 011779 232 TYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (477)
+.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999887643211 12234567899999986 78999999999999999999999999865
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
.+++|+|+|+|.+ ++.+++++++++++ +++.+.+.. +++..+|++||++++||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~~---~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGDP---ELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCCH---HHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 4699999999842 46778888887764 577776653 447789999999999999 999999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecC------CceeeecCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYE 446 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~ 446 (477)
|||++|+||| +++.||..|++.++ .+|++++++| +++++++|.+++. +++.+++|++++.+
T Consensus 384 EAma~G~pvI-------~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 454 (473)
T TIGR02095 384 YAMRYGTVPI-------VRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAMS 454 (473)
T ss_pred HHHHCCCCeE-------EccCCCccceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 9999999999 99999999999988 8999999998 9999999999888 99999999998863
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|||++++++|+++|+++
T Consensus 455 ---~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 ---QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred ---cCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999863
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.2e-40 Score=327.14 Aligned_cols=344 Identities=20% Similarity=0.205 Sum_probs=263.9
Q ss_pred cEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh--------
Q 011779 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-------- 143 (477)
Q Consensus 75 ~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-------- 143 (477)
|||++++..++| ||.+.++.+|+++|.++ ++|.|++...+. ....++++...+...
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------------FDSEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------------hcCCCeEEEEecChhhccchhhh
Confidence 689999998876 88889999999999987 777777754321 112344443222110
Q ss_pred --h-------HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------------chhhHhhccc
Q 011779 144 --T-------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------FKLDYVKHLP 201 (477)
Q Consensus 144 --~-------~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------~~~~~~~~~~ 201 (477)
. .....++|+||+|+.........+.+ . ...+++++.|+..... ........+.
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~--~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKK--L--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE 143 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHH--h--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHh
Confidence 0 01124799999998554432121111 1 1256788899864211 0111223456
Q ss_pred ccccceeeehhhHHHHHHHhHhhh-ccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
.++.+++.|....+.+.+ .+ +++..++.+||||+|.+.+.+.. +...++++++++++++|+++||+.
T Consensus 144 ~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~ 211 (388)
T TIGR02149 144 AADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRIT 211 (388)
T ss_pred hCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccc
Confidence 778888888887776654 33 56678899999999998776532 355778889888889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC-CCcEEEcc-cc--CCHHHHHHh
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVN-KT--LTVAPYLAA 356 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g-~~--~~l~~~~~~ 356 (477)
+.||++.+++|++++. ++++++++|+|... ..+.+.+++.+.+++. .++|.+++ .. +++..+|+.
T Consensus 212 ~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 212 RQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred cccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 9999999999999873 46889998876432 2356777887777765 34577654 43 789999999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH------HHHHHHHHHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKL 430 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~------~~la~~i~~l 430 (477)
||++|+||. .|+||++++|||++|+||| +++.||..|++.++.+|++++++| + ++++++|.++
T Consensus 281 aDv~v~ps~--~e~~g~~~lEA~a~G~PvI-------~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l 349 (388)
T TIGR02149 281 AEVFVCPSI--YEPLGIVNLEAMACGTPVV-------ASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINIL 349 (388)
T ss_pred CCEEEeCCc--cCCCChHHHHHHHcCCCEE-------EeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHH
Confidence 999999999 9999999999999999999 999999999999999999999988 7 8999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++|++.+++|++++++.+.++|||+.+++++.++|++++
T Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 350 LADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999863
No 17
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.6e-40 Score=330.05 Aligned_cols=368 Identities=17% Similarity=0.153 Sum_probs=268.3
Q ss_pred ccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhH--H-h-----hh----hhh---------
Q 011779 74 SKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV--I-Y-----SL----EHK--------- 128 (477)
Q Consensus 74 ~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~-~-----~~----~~~--------- 128 (477)
+|||+|++.+..| ||..-++..|.++|+++||+|.|+.+..+...... . . .+ ...
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 4899999988666 99999999999999999999999998765443210 0 0 00 000
Q ss_pred -hhhcCcEEEeccch-----------------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhhCC
Q 011779 129 -MWDRGVQVISAKGQ-----------------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKEDV 173 (477)
Q Consensus 129 -~~~~g~~v~~~~~~-----------------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~ 173 (477)
....+++++.+... + .+.. ..+|||||+|....+.... .++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~-~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPL-LLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH-HHHHHh
Confidence 00012333211000 0 1111 2489999999854433222 222111
Q ss_pred ----Cccccceeeeeeeccccc-chh---------h--------------HhhcccccccceeeehhhHHHHHHHhHhhh
Q 011779 174 ----PRVLPNVLWWIHEMRGHY-FKL---------D--------------YVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (477)
Q Consensus 174 ----~~~~~~~i~~~h~~~~~~-~~~---------~--------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (477)
.....+++.++|+..... +.. . .+..+..++.++++|...++.+.......+
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 011368899999864211 000 0 111235778889999988887654111123
Q ss_pred cc------CCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHH
Q 011779 226 RI------KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 226 ~~------~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~ 286 (477)
|+ ...++.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++
T Consensus 244 gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d 323 (489)
T PRK14098 244 GLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAE 323 (489)
T ss_pred ChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHH
Confidence 33 367899999999999988754321 12234678888999873 568999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+.++.+ ++++|+|+|+|+. ++++.++++++++ +++|.|+|.. +++..+|++||++|+||
T Consensus 324 ~li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~--~~~V~~~g~~~~~~~~~~~a~aDi~l~PS 389 (489)
T PRK14098 324 LLAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEH--PEQVSVQTEFTDAFFHLAIAGLDMLLMPG 389 (489)
T ss_pred HHHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHC--CCCEEEEEecCHHHHHHHHHhCCEEEeCC
Confidence 99999999865 5899999999842 3678899998877 4789999975 45789999999999999
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec----CCceeeecCCCCCHHHHHHHHHHHH---hCHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN----GTTGLLHPVGKEGITPLAKNIVKLA---THVERR 437 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~ 437 (477)
. .|+||++.+|||++|+|+| ++++||+.|.+.+ +.+|++++++| +++++++|.+++ +|++.+
T Consensus 390 ~--~E~~Gl~~lEAma~G~ppV-------v~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 390 K--IESCGMLQMFAMSYGTIPV-------AYAGGGIVETIEEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERW 458 (489)
T ss_pred C--CCCchHHHHHHHhCCCCeE-------EecCCCCceeeecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHH
Confidence 9 9999999999999999999 9999999998864 67999999998 999999999865 588888
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++++++. .+.|||++++++|+++|+++++
T Consensus 459 ~~~~~~~~---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 459 EELVLEAM---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHh---cCCCChHHHHHHHHHHHHHHhc
Confidence 88877664 4789999999999999999864
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.8e-40 Score=320.32 Aligned_cols=339 Identities=17% Similarity=0.258 Sum_probs=253.5
Q ss_pred cEEEEEec-cCC--C---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE--Eeccc-----
Q 011779 75 KLVLLVSH-ELS--L---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAKG----- 141 (477)
Q Consensus 75 ~~Il~v~~-~~~--~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v--~~~~~----- 141 (477)
.||++++. .++ + ||+|+++..+++.|.. +|++++...+...+ ......|+.+ +++..
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 72 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPE-------YTKVNDNCDIHYIGFSRIYKRL 72 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCc-------hhhccCCCceEEEEeccccchh
Confidence 35666554 332 2 8889999999999943 99999965543111 0112223333 22211
Q ss_pred ------------hhhH---HH---hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhccccc
Q 011779 142 ------------QETI---NT---ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLV 203 (477)
Q Consensus 142 ------------~~~~---~~---~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~ 203 (477)
...+ .. ..++|+||+|+..... ..+....+. .+++.++|+.. ... .+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~---~~~~~~~~~--~~~v~~~h~~~----~~~---~~~~~ 140 (380)
T PRK15484 73 FQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY---RQIRERAPQ--AKLVMHMHNAF----EPE---LLDKN 140 (380)
T ss_pred hhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH---HHHHhhCCC--CCEEEEEeccc----Chh---HhccC
Confidence 0111 11 2569999999854322 112222221 46778888642 111 22355
Q ss_pred ccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC
Q 011779 204 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283 (477)
Q Consensus 204 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K 283 (477)
+.+++.|....+.+.+. .+..++.+||||+|.+.|.+.. ...++++++++++..+|+++||+.+.|
T Consensus 141 ~~ii~~S~~~~~~~~~~------~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~K 206 (380)
T PRK15484 141 AKIIVPSQFLKKFYEER------LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDK 206 (380)
T ss_pred CEEEEcCHHHHHHHHhh------CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCcccc
Confidence 77888887777665542 3556899999999988776532 245677888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc----chHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
|++.+++|+.++.+ +.|+++|+|+|+|... ...+.+.+++++++++ ++|.|+|++ +++..+|+.|
T Consensus 207 g~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~a 277 (380)
T PRK15484 207 GILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLA 277 (380)
T ss_pred CHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhC
Confidence 99999999999876 6689999999987532 2235567777777665 589999986 6899999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCcee-eecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~-l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|+||. +.|+||++++|||+||+||| +++.||++|++.++.+|+ ++++.| +++++++|.++++|++.
T Consensus 278 Dv~v~pS~-~~E~f~~~~lEAma~G~PVI-------~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~ 347 (380)
T PRK15484 278 DLVVVPSQ-VEEAFCMVAVEAMAAGKPVL-------ASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL 347 (380)
T ss_pred CEEEeCCC-CccccccHHHHHHHcCCCEE-------EeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH
Confidence 99999997 25999999999999999999 999999999999999998 567777 99999999999999985
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
.+|++++++.+.++|||++++++++++|++..
T Consensus 348 -~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 348 -TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999998754
No 19
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=3.6e-40 Score=320.28 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=260.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcE-EEec-----------cchh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISA-----------KGQE 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~-----------~~~~ 143 (477)
+||++++....||+++.+.+++++|.++||+|++++.......... ...... .+.. ....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP--------IDATIILNLNMSKNPLSFLLALWKLR 72 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch--------hhccceEEecccccchhhHHHHHHHH
Confidence 4889998888899999999999999999999999985433221100 000000 0000 1123
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh-h-HhhcccccccceeeehhhHHHHHHHh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-YVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-~-~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
.+.+..+||+||+|......+.. +.+... ..++++.+.|+........ . +.......+..++.+....+.+.
T Consensus 73 ~~~~~~~pdiv~~~~~~~~~~~~-l~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--- 146 (360)
T cd04951 73 KILRQFKPDVVHAHMFHANIFAR-LLRLFL--PSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFI--- 146 (360)
T ss_pred HHHHhcCCCEEEEcccchHHHHH-HHHhhC--CCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHH---
Confidence 44566799999999865443322 222211 2256778888764321111 1 11111233334444444444433
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
+..+++..++.++|||+|...+.+.... ...+++++++++++++++++|++.+.||++.+++++.++.+
T Consensus 147 -~~~~~~~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~---- 215 (360)
T cd04951 147 -ASKAFNANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS---- 215 (360)
T ss_pred -hccCCCcccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh----
Confidence 3445677899999999998877554321 45678889988889999999999999999999999999876
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
+.|+++|+|+|+| +..+++++.++++++.++|.|+|+++++..+|+.||++++||. .|+||++++|||++
T Consensus 216 ---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~ 285 (360)
T cd04951 216 ---DYLDIKLLIAGDG-----PLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMAC 285 (360)
T ss_pred ---hCCCeEEEEEcCC-----CcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHc
Confidence 5689999999998 5678899999999998999999999999999999999999999 89999999999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
|+||| +++.|+..|++.+ +|++++++| +++++++|.++++ +++.+..++++ ++.+.+.|||+.++++
T Consensus 286 G~PvI-------~~~~~~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 286 ELPVV-------ATDAGGVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQ 353 (360)
T ss_pred CCCEE-------EecCCChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHH
Confidence 99999 9999999999966 899999988 9999999999995 66777777766 8888899999999999
Q ss_pred HHHHHH
Q 011779 461 IAVVLK 466 (477)
Q Consensus 461 ~~~~~~ 466 (477)
|.++|+
T Consensus 354 ~~~~y~ 359 (360)
T cd04951 354 WLTLYT 359 (360)
T ss_pred HHHHhh
Confidence 999996
No 20
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.9e-40 Score=323.16 Aligned_cols=351 Identities=19% Similarity=0.189 Sum_probs=255.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------hhH-
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------ETI- 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------~~~- 145 (477)
||+++++.+..||.++++.+++++|.+.||+|++++.................. .|..+ .+... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~ 77 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADI-ELSEEEKEIYLEWNEENA 77 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCC-CCCHHHHHHHHHHHHHHh
Confidence 589999988889999999999999999999999998654332111000111101 13332 11111 011
Q ss_pred ---HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh---hHhhcccccccceeeehhhHHHHHH
Q 011779 146 ---NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKHLPLVAGAMIDSHVTAEYWKN 219 (477)
Q Consensus 146 ---~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (477)
....+||+||+|++....+ ..+... ...+++++.|......... .....+..++.+++.+ .+..
T Consensus 78 ~~~~~~~~~Dvv~~h~~~~~~~-~~~~~~----~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~-- 147 (372)
T cd03792 78 ERPLLDLDADVVVIHDPQPLAL-PLFKKK----RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYV-- 147 (372)
T ss_pred ccccccCCCCEEEECCCCchhH-HHhhhc----CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhc--
Confidence 1245899999998764322 222221 1256778888754322211 1123334555555444 2221
Q ss_pred HhHhhhccCCCCeEEEecCCchhh-hhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 011779 220 RTRERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (477)
Q Consensus 220 ~~~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (477)
..+++..++ +||||+|... +..... ......+++++|+++++++|+++||+.+.||++.+++|++.+.+
T Consensus 148 ----~~~~~~~~~-vipngvd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~- 217 (372)
T cd03792 148 ----PPQVPPRKV-IIPPSIDPLSGKNRELS----PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE- 217 (372)
T ss_pred ----CCCCCCceE-EeCCCCCCCccccCCCC----HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh-
Confidence 123444555 9999999653 111111 11245678889998899999999999999999999999999866
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc----CCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~----~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.++++|+++|+|+..+....+.++++.+..++.++|.|+|.. +++..+|++||++++||. .||||++
T Consensus 218 ------~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~ 289 (372)
T cd03792 218 ------RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLT 289 (372)
T ss_pred ------hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHH
Confidence 4588999999998643333344456666667788899999874 679999999999999999 9999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 454 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 454 (477)
++|||+||+||| +++.||..+++.++.+|+++++ .++++++|.+++.|++.+++|++++++.+.++|+|
T Consensus 290 ~lEA~a~G~Pvv-------~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 358 (372)
T cd03792 290 VTEALWKGKPVI-------AGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLI 358 (372)
T ss_pred HHHHHHcCCCEE-------EcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCH
Confidence 999999999999 9999999999999999999874 57889999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHH
Q 011779 455 HHMAERIAVVLKEV 468 (477)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (477)
+.+++++.++|+++
T Consensus 359 ~~~~~~~~~~~~~~ 372 (372)
T cd03792 359 TRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999863
No 21
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=8e-41 Score=328.77 Aligned_cols=344 Identities=22% Similarity=0.266 Sum_probs=258.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-----c-h------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----G-Q------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-----~-~------ 142 (477)
||||++++++..||+++++.+|+++|.++||+|+++|...+.... .......++.+.... . .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC------FEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc------chhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 789999999989999999999999999999999999965332110 011111123221110 0 0
Q ss_pred ----hh--------HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------cchhh--------H
Q 011779 143 ----ET--------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLD--------Y 196 (477)
Q Consensus 143 ----~~--------~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~~~--------~ 196 (477)
+. .....++|+||+++......+.... .+ .++++++|..... ..... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~---~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF---SP---SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh---cC---CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 00 1334689999998754433322111 11 4677888843211 11111 1
Q ss_pred hhcccccccceeeehhhHHHHHHHhHhhhcc-CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEE
Q 011779 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (477)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~ 275 (477)
...++.++.+++.|....+.+.+. ++. ...++.+|+||+|.+.|.+.... ..++.....++.++|++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFKKT----FPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHHHH----hcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 123567788888888888776553 332 33345699999999887654321 12233445577899999
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhccCc---CceEEEEEecCCCc---chHHHHHHHHHHHh-cCCCCcEEEcccc-
Q 011779 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEV---PSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT- 347 (477)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~---~~~~l~ivG~g~~~---~~~~~~~l~~~~~~-~~l~~~v~~~g~~- 347 (477)
+||+.+.||++.+++|+.++.+ +. ++++|+++|+|+.. +..+.+++++++++ +++.++|.|+|++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~-------~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKD-------KLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred EeeecccCChHHHHHHHHHHHh-------hcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 9999999999999999999876 44 78999999998532 22356889999999 9999999999986
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
+++..+|+.||++++||. .|+||++++|||++|+||| +++.||..|++.++.+|+++++ | +++++++
T Consensus 290 ~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI-------~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~ 357 (392)
T cd03805 290 DSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVI-------ACNSGGPLETVVDGETGFLCEP-T--PEEFAEA 357 (392)
T ss_pred hHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEE-------EECCCCcHHHhccCCceEEeCC-C--HHHHHHH
Confidence 567899999999999999 9999999999999999999 9999999999999999999976 6 8999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.+++++++.+++|++++++.++++|||+.+++++
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999999999999999998764
No 22
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.3e-40 Score=320.02 Aligned_cols=336 Identities=21% Similarity=0.240 Sum_probs=263.0
Q ss_pred eccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------------hhhHH
Q 011779 81 SHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------------QETIN 146 (477)
Q Consensus 81 ~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------------~~~~~ 146 (477)
.+.+..||+++++.+++++|.++||+|++++..... ...+...|++++.... .....
T Consensus 4 ~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (355)
T cd03819 4 LPALESGGVERGTLELARALVERGHRSLVASAGGRL---------VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLI 74 (355)
T ss_pred chhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch---------HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHH
Confidence 355667999999999999999999999999864321 1223334554433211 12344
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
+..+||+||+|+.........+... ...++++++|+...... .+...+...+.+++.|....+.+.+ .++
T Consensus 75 ~~~~~dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~~~~----~~~ 144 (355)
T cd03819 75 REEKVDIVHARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADHIRE----NYG 144 (355)
T ss_pred HHcCCCEEEECCCchhHHHHHHHHh----cCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHHHHH----hcC
Confidence 5689999999985443322222211 12578888997643221 3344456778888888877776653 567
Q ss_pred cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCc
Q 011779 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 306 (477)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~ 306 (477)
++..++.+||||+|.+.+.+..... .....+|++++.+++.++++++||+.+.||++.+++++..+.+ ..
T Consensus 145 ~~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~ 214 (355)
T cd03819 145 VDPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DD 214 (355)
T ss_pred CChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cC
Confidence 7888999999999998876543211 1123367888888889999999999999999999999999876 45
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC-CCCCCcccHHHHHHHHcCCCE
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS-QAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS-~~~~E~~g~~~lEAma~G~Pv 385 (477)
++++|+|+|.+...+ .+.+.+.+.++++++.++|.|+|+.+++..+|+.||++++|| . .|+||++++|||++|+||
T Consensus 215 ~~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~--~e~~~~~l~EA~a~G~Pv 291 (355)
T cd03819 215 PDVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE--PEAFGRTAVEAQAMGRPV 291 (355)
T ss_pred CCeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC--CCCCchHHHHHHhcCCCE
Confidence 789999999985332 356667788888899899999999999999999999999999 5 899999999999999999
Q ss_pred EeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
| +++.||..|++.++.+|++++++| +++++++|..++. +++.+++++++|++.+.++|+|+++
T Consensus 292 I-------~~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 292 I-------ASDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred E-------EcCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9 999999999999998999999988 9999999975555 8999999999999999999999864
No 23
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.9e-40 Score=341.17 Aligned_cols=378 Identities=16% Similarity=0.137 Sum_probs=268.6
Q ss_pred CCccEEEEEecc-C--------C----CCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHh--h---h------
Q 011779 72 MKSKLVLLVSHE-L--------S----LSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIY--S---L------ 125 (477)
Q Consensus 72 ~~~~~Il~v~~~-~--------~----~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~--~---~------ 125 (477)
.++|.|++++.. . . .||...++.+|+++|+++| |+|+|+|...........| + +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 456788888743 1 1 1566689999999999998 8999999654322100000 0 0
Q ss_pred ---hhhhhhcCcEEEeccc------hh----------------hHHHh--------------cCCcEEEEcCcchhhHHH
Q 011779 126 ---EHKMWDRGVQVISAKG------QE----------------TINTA--------------LKADLIVLNTAVAGKWLD 166 (477)
Q Consensus 126 ---~~~~~~~g~~v~~~~~------~~----------------~~~~~--------------~~~DiV~~~~~~~~~~~~ 166 (477)
.......|+.+++++. .. ..... ..||+||+|...++....
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 0111224677654331 10 11110 149999999866555433
Q ss_pred HHhhhCCCccccceeeeeeecccccc------------------h--hh---HhhcccccccceeeehhhHHHHHHHhH-
Q 011779 167 AVLKEDVPRVLPNVLWWIHEMRGHYF------------------K--LD---YVKHLPLVAGAMIDSHVTAEYWKNRTR- 222 (477)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~h~~~~~~~------------------~--~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~- 222 (477)
.+... ...|++.+.|....... . .. ....+..++.+++.+......+...+.
T Consensus 327 ~L~~~----lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 327 LLSGA----LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHHh----hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 33222 22578899996421100 0 00 122356778888888777765433210
Q ss_pred -----------------hhhccCCCCeEEEecCCchhhhhhhhhhHHHH-------------HHHHHHHHhhCCCCCCeE
Q 011779 223 -----------------ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR-------------VLREHVRESLGVRNEDLL 272 (477)
Q Consensus 223 -----------------~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~-------------~~~~~~r~~~~~~~~~~~ 272 (477)
.-||...+++.|||||+|++.|.|........ .....++ ++..++++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdkpv 481 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRKPM 481 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccCCCcE
Confidence 01233356999999999999998753221100 0012333 3445678889
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc------chHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~------~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
|+++||+.++||++.||+|+..+.+.. ..+++. +|+|+++.. ..++..+++++++++++.++|.|+|+
T Consensus 482 IL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~ 555 (1050)
T TIGR02468 482 ILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH 555 (1050)
T ss_pred EEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC
Confidence 999999999999999999999986421 125665 467876321 12345678899999999999999997
Q ss_pred c--CCHHHHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 347 T--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 347 ~--~~l~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
. +++..+|+.| |+||+||. +|+||++++||||||+||| +|+.||+.|++.++.+|++++++| +
T Consensus 556 v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVV-------ASdvGG~~EII~~g~nGlLVdP~D--~ 624 (1050)
T TIGR02468 556 HKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMV-------ATKNGGPVDIHRVLDNGLLVDPHD--Q 624 (1050)
T ss_pred CCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEE-------EeCCCCcHHHhccCCcEEEECCCC--H
Confidence 4 8899999988 69999999 9999999999999999999 999999999999999999999999 9
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++++|.++++|++.+++|++++++.+. +|+|+.++++|++.|..+..+.
T Consensus 625 eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 625 QAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999985 6999999999999999887544
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1.9e-39 Score=314.81 Aligned_cols=345 Identities=23% Similarity=0.302 Sum_probs=271.3
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------hh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------QE 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------~~ 143 (477)
||+++.+.+.+||+++.+..++++|.+.|++|.+++...... ....+...+++++.... ..
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-------LGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-------hhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 589999999999999999999999999999999998654321 12233334666543321 12
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---chh----hHhhcccccccceeeehhhHHH
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FKL----DYVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---~~~----~~~~~~~~~~~~~~~s~~~~~~ 216 (477)
.+.+..+||+||++......+....... . ..++++++.|+..... ... .........+.+++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARL-A--GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHh-c--CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 3445679999999875433322222221 1 1257888888865441 111 1122334555557777666666
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+.+ ++++..++.+++||+|...+.+.... ....+++++++++.++|+++|++.+.||++.+++++.++.
T Consensus 151 ~~~-----~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 HQA-----IGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred HHH-----cCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 553 36777889999999998877654322 3456788999889999999999999999999999999987
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH-hcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
+ +.++++|+++|.+ +....++.... +.++.++|.++|..+++..+|+.||++++||. .|++|+++
T Consensus 220 ~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 K-------KFPNARLLLVGDG-----PDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred H-------hCCCeEEEEecCC-----cchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 6 5689999999998 34555566665 78888999999999999999999999999999 89999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
+|||++|+||| +++.|+..|++.+ +|++++++| +++++++|.+++++++.+.++++++++.+.++|||+
T Consensus 286 ~Ea~a~g~PvI-------~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 286 LEAMACGLPVV-------ATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHhcCCCEE-------EcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999 9999999999966 899999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011779 456 HMAERIAVVLK 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
++++++.++|+
T Consensus 355 ~~~~~~~~~y~ 365 (365)
T cd03807 355 AMVEAYEELYR 365 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999884
No 25
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.3e-39 Score=327.72 Aligned_cols=363 Identities=20% Similarity=0.169 Sum_probs=264.6
Q ss_pred EEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh------------------hhhhhcC
Q 011779 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------------------HKMWDRG 133 (477)
Q Consensus 76 ~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------------------~~~~~~g 133 (477)
||++++++..| ||...++..|+++|+++||+|.|+++..+........... ......|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 58999988554 9999999999999999999999999766543221100000 0011235
Q ss_pred cEEEeccchh------------------------------hHHH--hcCCcEEEEcCcchhhHHHHHhhhCC--Cccccc
Q 011779 134 VQVISAKGQE------------------------------TINT--ALKADLIVLNTAVAGKWLDAVLKEDV--PRVLPN 179 (477)
Q Consensus 134 ~~v~~~~~~~------------------------------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (477)
++++.+.... .+.. ..+||+||+|....+.....+..... .....+
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 5554331110 1112 26899999998655443332222210 012368
Q ss_pred eeeeeeeccccc-chh--------------------------hHhhcccccccceeeehhhHHHHHHH-----hHhhhcc
Q 011779 180 VLWWIHEMRGHY-FKL--------------------------DYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRI 227 (477)
Q Consensus 180 ~i~~~h~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~ 227 (477)
+++++|+..... +.. .....+..++.+++.|....+.+.+. +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999864211 000 11123456788888888887766531 1112233
Q ss_pred CCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCC--CCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 228 KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~--~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
...++.+|+||+|.+.|.+...+. .+...+..+++++|++ ++.++|+++||+.++||++.+++++.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 457899999999999887754332 1234467789999985 788999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEc-ccc-CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKT-LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~-~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ .+++|+++|+|.. ++.+.++++++++ .+++.+. |.. +.+..+|+.||++++||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 865 4599999999842 4567778777765 4677765 444 446789999999999999 99999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCC------ceeeecCCCCCHHHHHHHHHHHHh---CHHHHHHHHHH
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKR 443 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~ 443 (477)
++++|||++|+||| +++.||+.|++.++. +|++++++| +++++++|.++++ +++.+.+++++
T Consensus 385 l~~lEAma~G~pvI-------~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~ 455 (476)
T cd03791 385 LTQMYAMRYGTVPI-------VRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRN 455 (476)
T ss_pred HHHHHHhhCCCCCE-------ECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999 999999999999987 999999998 9999999999875 67778888777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+.+ +.|||+.++++|.++|+
T Consensus 456 ~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 456 AMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred Hhc---cCCChHHHHHHHHHHHh
Confidence 654 57999999999999996
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=4.4e-39 Score=325.21 Aligned_cols=372 Identities=17% Similarity=0.167 Sum_probs=256.2
Q ss_pred CCccEEEEEeccC----C-------CCchhhHHHHHHHHH--------HhCCc----EEEEEecCCCCChhhH-Hhhhhh
Q 011779 72 MKSKLVLLVSHEL----S-------LSGGPLLLMELAFLL--------RGVGT----KVNWITIQKPSEEDEV-IYSLEH 127 (477)
Q Consensus 72 ~~~~~Il~v~~~~----~-------~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~~-~~~~~~ 127 (477)
.|.|+|++++... . .||...++.+++++| +++|| +|+|+|...+...... ...+..
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 3568999998654 2 256568999999974 68999 7889996544321100 000111
Q ss_pred hhhhcCcEEEecc--c---------h-----------------hhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccc
Q 011779 128 KMWDRGVQVISAK--G---------Q-----------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (477)
Q Consensus 128 ~~~~~g~~v~~~~--~---------~-----------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (477)
.-...++.+++.+ . . +.+.. ..+||+||+|...++... ..++.+. .
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva-~lla~~l---g 408 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA-SLLARKL---G 408 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH-HHHHHhc---C
Confidence 1112355554322 1 0 01111 246999999986665433 3333222 2
Q ss_pred cceeeeeeecccc-------cch---hh---------HhhcccccccceeeehhhHHHHHHHhH-----------hhh--
Q 011779 178 PNVLWWIHEMRGH-------YFK---LD---------YVKHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL-- 225 (477)
Q Consensus 178 ~~~i~~~h~~~~~-------~~~---~~---------~~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~-- 225 (477)
.+.+.+.|..... ++. .. ....+..++.+++.+..-.....+.+. ..+
T Consensus 409 VP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~v 488 (784)
T TIGR02470 409 VTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRV 488 (784)
T ss_pred CCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeee
Confidence 4666777854211 111 00 112334567777776432111111110 112
Q ss_pred --cc--CCCCeEEEecCCchhhhhhhhhhHHHH-H----------HHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHH
Q 011779 226 --RI--KMPDTYVVHLGNSKELMEVAEDNVAKR-V----------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 226 --~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~-~----------~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~l 288 (477)
|+ +.+|+.+||+|+|.+.|.|........ . .+.+.++.+|+ ++++++|+++||+.+.||++.+
T Consensus 489 vnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~L 568 (784)
T TIGR02470 489 VHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGL 568 (784)
T ss_pred ecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHH
Confidence 22 557999999999999887643321110 0 12344567775 5678899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHH---
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA--- 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~--- 355 (477)
++|+.++.. ..++++|+|+|++... ...+.+++.++++++++.++|.|+|.+ .++.++|+
T Consensus 569 IeA~~~l~~-------l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 569 VECYGRSPK-------LRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred HHHHHHhHh-------hCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 999987643 2257899999987421 112456788899999999999999974 45566664
Q ss_pred -hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH---
Q 011779 356 -AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA--- 431 (477)
Q Consensus 356 -~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll--- 431 (477)
.+|+||+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|+++++.| +++++++|.+++
T Consensus 642 d~adVfV~PS~--~EpFGLvvLEAMAcGlPVV-------AT~~GG~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kl 710 (784)
T TIGR02470 642 DTKGIFVQPAL--YEAFGLTVLEAMTCGLPTF-------ATRFGGPLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKC 710 (784)
T ss_pred ccCcEEEECCc--ccCCCHHHHHHHHcCCCEE-------EcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHh
Confidence 3579999999 9999999999999999999 999999999999999999999999 999999999876
Q ss_pred -hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 432 -THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 432 -~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.|++.+++|++++++++.++|||+.++++++++.
T Consensus 711 l~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 711 DEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999998765
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.7e-39 Score=318.87 Aligned_cols=333 Identities=17% Similarity=0.219 Sum_probs=241.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------- 142 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~------------- 142 (477)
||||+++.++. ....|+++|.++||+|+++|........ . |++++.++..
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~-----------~-~v~~~~~~~~~~~~~~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPP-----------G-GVRVVRYRPPRGPTSGTHPYLRE 63 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCC-----------C-CeeEEEecCCCCCCCCCCccchh
Confidence 58999988862 4678999999999999999966553211 0 4555433211
Q ss_pred ---------------hhH-HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeee------eeccccc-----ch--
Q 011779 143 ---------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI------HEMRGHY-----FK-- 193 (477)
Q Consensus 143 ---------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------h~~~~~~-----~~-- 193 (477)
..+ .+..+||+||+|......... +...+. .+++.++ |+....+ ..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l---~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
T cd03818 64 FEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFL---KDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhH---HHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchh
Confidence 011 133579999999754433221 111121 2233322 2211111 00
Q ss_pred --hh-------HhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhh
Q 011779 194 --LD-------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (477)
Q Consensus 194 --~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (477)
.. ....+..++.+++.|....+.+... + ..++.+||||+|.+.|.+.+.. ....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~----~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~ 205 (396)
T cd03818 139 DALRLRNRNALILLALAQADAGVSPTRWQRSTFPAE----L---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGR 205 (396)
T ss_pred HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHh----h---ccceEEeCCCccccccCCCchh------hhcccccc
Confidence 11 1123567888888888777765432 2 2689999999999988765322 11223333
Q ss_pred CCCCCCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHHHHHHH-hc
Q 011779 265 GVRNEDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVM-QK 335 (477)
Q Consensus 265 ~~~~~~~~il~vGr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l~~~~~-~~ 335 (477)
+++++.++|+++|| +.+.||++.+++|+.++.+ +.|+++|+|+|++... ...+.+.+.+... ++
T Consensus 206 ~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 206 VLTPGDEVITFVARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred cCCCCCeEEEEECCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 45567889999998 9999999999999999876 5689999999974210 0012333322222 22
Q ss_pred CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeee
Q 011779 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLH 413 (477)
Q Consensus 336 ~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~ 413 (477)
+ .++|+|+|++ +++..+|+.||++++||. .|++|++++||||||+||| +++.||..|++.++.+|+++
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVI-------as~~~g~~e~i~~~~~G~lv 348 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVV-------GSDTAPVREVITDGENGLLV 348 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEE-------EcCCCCchhhcccCCceEEc
Confidence 2 4799999986 789999999999999999 9999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 414 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 414 ~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+++| +++++++|.++++|++.+++|++++++.+.++|||+.++++|.
T Consensus 349 ~~~d--~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 349 DFFD--PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9998 9999999999999999999999999999999999999999885
No 28
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=2.7e-39 Score=313.06 Aligned_cols=341 Identities=13% Similarity=0.139 Sum_probs=246.5
Q ss_pred cEEEEEeccCC-CCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--e----ccchhhH
Q 011779 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S----AKGQETI 145 (477)
Q Consensus 75 ~~Il~v~~~~~-~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~----~~~~~~~ 145 (477)
|||+++.+..+ .||+++++.+++++|.++ ||+|.+++.......... ...........+.+. . ......+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-KEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-HhcchhcccccchhhhhcccHHHHHHHHH
Confidence 78999998764 499999999999999999 899999986554321110 000000000011111 0 1122355
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhh-CCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKE-DVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (477)
.+..+||+||+|++....+...+.+. +.+ .+++.+.|........ .....+...+.+++.|....+.+. .
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~~~~~-~~~~~~~~~d~~i~~S~~~~~~~~-----~ 150 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANKARKKSGKQ---FKIFSWPHFSLDHKKH-AECKKITCADYHLAISSGIKEQMM-----A 150 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHHHHHHhCCC---CeEEEEecCcccccch-hhhhhhhcCCEEEEcCHHHHHHHH-----H
Confidence 67789999999986554332222221 222 2345555643211111 111224677888888888777654 3
Q ss_pred hccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhh
Q 011779 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++++.+++.+||||+|.+.+...... ..++++++++||+.. .||++.+++++.++.
T Consensus 151 ~~~~~~ki~vi~N~id~~~~~~~~~~----------------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------ 208 (359)
T PRK09922 151 RGISAQRISVIYNPVEIKTIIIPPPE----------------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------ 208 (359)
T ss_pred cCCCHHHEEEEcCCCCHHHccCCCcc----------------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC------
Confidence 46777889999999996644321100 135688999999964 699999999998762
Q ss_pred ccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC----CHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~----~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
++++|+++|+| +..+.+++++++++++++|.|+|+++ ++..+|+.+|++|+||. .||||++++||
T Consensus 209 ----~~~~l~ivG~g-----~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEA 277 (359)
T PRK09922 209 ----GEWQLHIIGDG-----SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEA 277 (359)
T ss_pred ----CCeEEEEEeCC-----ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHH
Confidence 47999999999 67888999999999999999999864 46777888999999999 99999999999
Q ss_pred HHcCCCEEeecccccccc-CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 379 MAFQLPVLLQKCLYQGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~-~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
||||+||| +++ .||..|++.++.+|++++++| +++++++|.++++|++.+. .++......+|+.+.+
T Consensus 278 ma~G~Pvv-------~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 345 (359)
T PRK09922 278 MSYGIPCI-------SSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLY 345 (359)
T ss_pred HHcCCCEE-------EeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHH
Confidence 99999999 999 899999999999999999998 9999999999999987541 2233334466888999
Q ss_pred HHHHHHHHHHHHh
Q 011779 458 AERIAVVLKEVLK 470 (477)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (477)
.+++.++|..+.+
T Consensus 346 ~~~~~~~~~~~~~ 358 (359)
T PRK09922 346 FKNLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 29
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1.5e-38 Score=308.77 Aligned_cols=329 Identities=17% Similarity=0.187 Sum_probs=252.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------hhh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QET 144 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----------~~~ 144 (477)
||+++++.+..||+++++.+++++|.+.||+|++++....... ........++.++.... ...
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGD------YDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcc------hHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 6899999988899999999999999999999999996654321 12233444565543211 123
Q ss_pred HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--hh-h-----HhhcccccccceeeehhhHHH
Q 011779 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KL-D-----YVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~-~-----~~~~~~~~~~~~~~s~~~~~~ 216 (477)
+.+..+||+||+|+...........+. .. .+.++.+.|....... .. . .......++.+++.+....+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKK-AG--VKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhh-CC--CCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 345679999999986543333322222 11 1344566676432211 11 1 122345667778888777766
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+... ....++.+||||+|.+.+.+.... ++. +++.+...++++|+++||+.++||++.+++++..+.
T Consensus 152 ~~~~------~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 152 LFGK------VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred HHhC------CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 5432 356789999999999877654322 122 566777788999999999999999999999999997
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
+ +.++++++|+|+| +..+.+++.++++++.++|.|+|+.+++.++|+.||++|+||. .|+||++++
T Consensus 219 ~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~l 284 (358)
T cd03812 219 K-------KNPNAKLLLVGDG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLI 284 (358)
T ss_pred H-------hCCCeEEEEEeCC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHH
Confidence 6 6689999999999 6788899999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
|||++|+||| +++.||..|++.+ ..|++..+++ +++++++|.++++|++.++.++..+......
T Consensus 285 EAma~G~PvI-------~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 285 EAQASGLPCI-------LSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHhCCCEE-------EEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccchh
Confidence 9999999999 9999999999988 4666666666 8999999999999999999998888775544
No 30
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=1.2e-38 Score=310.53 Aligned_cols=331 Identities=20% Similarity=0.215 Sum_probs=255.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE-----------------e
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-----------------S 138 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~-----------------~ 138 (477)
+|+++.+.+.++ +++++.++++.|. |++|++++......... .....++..+ .
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPL-------GALAVRLADLAGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCC-------cccceeeeecccchhHHHHHHHHhcccc
Confidence 477888777665 7899999999995 78888887543322110 0001111111 1
Q ss_pred ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccc
Q 011779 139 AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGA 206 (477)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~ 206 (477)
......+.+..+||+||+|....+.....+.+. ...+++++.|+...... .......++.++.+
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 112233456789999999975544433332222 22567888886432111 11223344677888
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.|....+.+.+ ++++..++.+++||+|.+.+.+... ..++.+++++|++.+.||++
T Consensus 147 i~~s~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 147 IAVSQFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred EECCHHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChH
Confidence 8888887776653 3677788999999999887754321 14567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+..+.+ +.++++|+++|+| ++.++++++++++++.++|+|+|++ +++..+|+.||++++||
T Consensus 205 ~li~a~~~l~~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps 272 (367)
T cd05844 205 LLLEAFARLAR-------RVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272 (367)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECc
Confidence 99999999876 5689999999998 7788899999999999999999986 77999999999999999
Q ss_pred CC----CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 365 QA----WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 365 ~~----~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.. ..||||++++|||++|+||| +++.++..|++.++.+|++++++| +++++++|.++++|++.+++|
T Consensus 273 ~~~~~~~~E~~~~~~~EA~a~G~PvI-------~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 273 VTAPSGDAEGLPVVLLEAQASGVPVV-------ATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARM 343 (367)
T ss_pred ccCCCCCccCCchHHHHHHHcCCCEE-------EeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHH
Confidence 62 14999999999999999999 999999999999999999999888 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
++++++.+.++|||+.+++++.+
T Consensus 344 ~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 344 GAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999999999999999875
No 31
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-40 Score=291.17 Aligned_cols=342 Identities=20% Similarity=0.186 Sum_probs=268.6
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------------- 139 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-------------- 139 (477)
+|+++++.+-| ||.+.+++.|++.|.+.||.|.++|-..+.. ..-.....|.+++..
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r-------~girylt~glkVyylp~~v~~n~tT~ptv 74 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNR-------VGIRYLTNGLKVYYLPAVVGYNQTTFPTV 74 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCc-------cceeeecCCceEEEEeeeeeecccchhhh
Confidence 68888887666 9999999999999999999999999666542 122223345555432
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch------hhHhhcccccccceee
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMID 209 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~~~~~~~~~~~ 209 (477)
+..+.+...++..+||.|++++...-..++..+. .+-+.+++-|...+..-- ....-.+...++++|.
T Consensus 75 ~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcV 152 (426)
T KOG1111|consen 75 FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICV 152 (426)
T ss_pred hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEE
Confidence 3345666667999999999887766555554433 446788999987554322 1122234678889999
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|.+..+-.. -+-.++++++.+|||.++.+.|.|.+.... +.+...++.+||+.++||+|+++
T Consensus 153 shtskentv----lr~~L~p~kvsvIPnAv~~~~f~P~~~~~~--------------S~~i~~ivv~sRLvyrKGiDll~ 214 (426)
T KOG1111|consen 153 SHTSKENTV----LRGALAPAKVSVIPNAVVTHTFTPDAADKP--------------SADIITIVVASRLVYRKGIDLLL 214 (426)
T ss_pred eecCCCceE----EEeccCHhHeeeccceeeccccccCccccC--------------CCCeeEEEEEeeeeeccchHHHH
Confidence 988876432 134578899999999999999998643311 13448899999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~ 367 (477)
+++.++++ ++|+++|+|+|+| |.+..+++..+++.++++|.++|.+ +++.+.|...|+|++||.
T Consensus 215 ~iIp~vc~-------~~p~vrfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl-- 280 (426)
T KOG1111|consen 215 EIIPSVCD-------KHPEVRFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL-- 280 (426)
T ss_pred HHHHHHHh-------cCCCeeEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH--
Confidence 99999988 8899999999999 7888899999999999999999985 889999999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
.|.||++++|||+||+||| +|++||++|++-++ .-++..++ ++++++++++.+..-. ..-+...++
T Consensus 281 TEafc~~ivEAaScGL~VV-------sTrVGGIpeVLP~d-~i~~~~~~---~~dl~~~v~~ai~~~~---~~p~~~h~~ 346 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVV-------STRVGGIPEVLPED-MITLGEPG---PDDLVGAVEKAITKLR---TLPLEFHDR 346 (426)
T ss_pred HHHHHHHHHHHHhCCCEEE-------EeecCCccccCCcc-ceeccCCC---hHHHHHHHHHHHHHhc---cCchhHHHH
Confidence 9999999999999999999 99999999999554 33334443 7888888888886321 113445677
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 448 VKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 448 ~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
+++.|+|+.++++.+++|.++....
T Consensus 347 v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 347 VKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcc
Confidence 8889999999999999999987654
No 32
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.7e-38 Score=312.91 Aligned_cols=337 Identities=23% Similarity=0.231 Sum_probs=255.0
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------------------hhhH
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------------------QETI 145 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------------------~~~~ 145 (477)
||+++++.+|+++|+++||+|+|++......... ......++.++.... ....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPP------IVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRF 94 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCC------ccccccceEEEecccccccCCChhhcchhHHHHHHHHHHH
Confidence 8999999999999999999999999544322110 011122444432211 0112
Q ss_pred HHhc--CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch--------------hhHhhcccccccceee
Q 011779 146 NTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------------LDYVKHLPLVAGAMID 209 (477)
Q Consensus 146 ~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--------------~~~~~~~~~~~~~~~~ 209 (477)
.+.. +||+||+|....+.....+.+. ...+++++.|........ ......+..++.+++.
T Consensus 95 ~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 170 (398)
T cd03800 95 LRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIAS 170 (398)
T ss_pred HHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEc
Confidence 2334 9999999975444332222211 124677788875321110 0112344577788888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|....+.+.+ .++.+..++.+||||+|.+.+.+.... ...++.++.+.++++|+++||+.+.||++.++
T Consensus 171 s~~~~~~~~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll 239 (398)
T cd03800 171 TPQEAEELYS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLDPRKGIDTLI 239 (398)
T ss_pred CHHHHHHHHH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccccccCHHHHH
Confidence 8777666554 444455679999999999877654322 12255566667889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchH-HHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~-~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~ 366 (477)
+++..+.+ +.++++|+++|++.....+ +...++++++++++.++|.|+|++ +++..+|+.||++++||.
T Consensus 240 ~a~~~l~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~- 311 (398)
T cd03800 240 RAYAELPE-------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL- 311 (398)
T ss_pred HHHHHHHH-------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc-
Confidence 99999876 4578999999998543222 345678888999998999999996 689999999999999999
Q ss_pred CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
.|+||++++|||++|+||| +++.+|..|++.++++|++++++| +++++++|.+++++++.+++|++++++
T Consensus 312 -~e~~~~~l~Ea~a~G~Pvi-------~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 312 -YEPFGLTALEAMACGLPVV-------ATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred -ccccCcHHHHHHhcCCCEE-------ECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988 999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIA 462 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~ 462 (477)
.++++|||+.++++|+
T Consensus 382 ~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 382 RARARYTWERVAARLL 397 (398)
T ss_pred HHHHhCCHHHHHHHHh
Confidence 9999999999999876
No 33
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-37 Score=305.03 Aligned_cols=352 Identities=16% Similarity=0.149 Sum_probs=255.1
Q ss_pred ccEEEEEeccCCCC-chhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCc------EEEecc--ch
Q 011779 74 SKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISAK--GQ 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~------~v~~~~--~~ 142 (477)
+++|+|++|+.+.| |+|+.+.+.+.+|++.|+ +|+++|.+.+...+.. +.......++ .++.++ .+
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~---l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSL---AARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHH---HHHHHhhcceecCCCceEEEeccccc
Confidence 46899999999885 999999999999999998 8888886654433221 1111112233 112120 00
Q ss_pred ----------------hhH------HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------
Q 011779 143 ----------------ETI------NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------- 191 (477)
Q Consensus 143 ----------------~~~------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------- 191 (477)
+.+ .....| .|++.+......+..+... ..++++++|......
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p-~v~vDt~~~~~~~pl~~~~-----~~~v~~yvH~p~~~~dm~~~v~~~ 183 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTP-LYFFDTSGYAFTYPLARLF-----GCKVVCYTHYPTISSDMISRVRDR 183 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCC-CEEEeCCCcccHHHHHHhc-----CCcEEEEEeCCcchHHHHHHHhhc
Confidence 111 111344 5777664422222222211 257889999542110
Q ss_pred ------------------chhhHhh--------cccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhh
Q 011779 192 ------------------FKLDYVK--------HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 245 (477)
Q Consensus 192 ------------------~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (477)
.+..+++ ....++.++++|..+.+.+.+ .++. ..++.+++||+|.+.+.
T Consensus 184 ~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~ 258 (463)
T PLN02949 184 SSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQ 258 (463)
T ss_pred ccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHcc
Confidence 0011111 125677888998888877754 2333 35789999999987553
Q ss_pred hhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-chHH
Q 011779 246 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKF 324 (477)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~ 324 (477)
..+.. .++++..++++||+.++||++.+|+|++++.+++.+ +.++++|+|+|++... +.++
T Consensus 259 ~~~~~---------------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~ 320 (463)
T PLN02949 259 ALPLE---------------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEER 320 (463)
T ss_pred cCCcc---------------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHH
Confidence 21110 013456889999999999999999999998764332 3478999999997432 2356
Q ss_pred HHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce-
Q 011779 325 ESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT- 401 (477)
Q Consensus 325 ~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~- 401 (477)
.+++++++++++++++|.|+|+. +++..+|+.||++++||. .|+||++++|||++|+||| +++.||..
T Consensus 321 ~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVI-------a~~~gGp~~ 391 (463)
T PLN02949 321 LQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPI-------AHNSAGPKM 391 (463)
T ss_pred HHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEE-------EeCCCCCcc
Confidence 78899999999999999999986 789999999999999998 9999999999999999999 99999974
Q ss_pred EEeec---CCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 402 EIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 402 e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
|++.+ +.+|++++ | +++++++|.++++ +++.+++|++++++.+ ++|||+++++++.+.|+++++.
T Consensus 392 eIV~~~~~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 392 DIVLDEDGQQTGFLAT--T--VEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred eeeecCCCCcccccCC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 78765 67899974 5 9999999999998 6888999999999998 6699999999999999998764
No 34
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.7e-37 Score=300.95 Aligned_cols=334 Identities=21% Similarity=0.192 Sum_probs=260.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE-------ec---cchhhH
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-------SA---KGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~-------~~---~~~~~~ 145 (477)
|||++++.++++ +++++.++++.|.++||+|++++...+...... ......+..+. .. ......
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVH-----PEDRAELARTRYLARSLALLAQALVLARE 74 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCccccccc-----ccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 599999988665 789999999999999999999996544321100 00000000000 00 011122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh--hHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL--DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
.+..++|+||+|.......+........ ..++++++|......... .....++.++.+++.+....+.+.+
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~---- 147 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR---- 147 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----
Confidence 3457999999998644333333222211 256777888654332222 4556667888999988888877665
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
.++.+..++.++|||+|.+.+.+.. .....+++.|+++|++.+.||++.+++++.++.+
T Consensus 148 ~~~~~~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~------ 206 (355)
T cd03799 148 LLGCDPDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD------ 206 (355)
T ss_pred hcCCCcccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh------
Confidence 3467778999999999988775432 0112567889999999999999999999999876
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCC------CcccHHH
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRIT 375 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~------E~~g~~~ 375 (477)
+.++++|+++|.+ +..+.+++.++++++.++|.|.|+. +++..+|+.||++++||. . |+||+++
T Consensus 207 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~ 278 (355)
T cd03799 207 -RGIDFRLDIVGDG-----PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVL 278 (355)
T ss_pred -cCCCeEEEEEECC-----ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHH
Confidence 5579999999998 5678889999999999999999997 789999999999999999 7 9999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
+|||++|+||| +++.|+..+++.++.+|++++++| +++++++|.+++++++.+.++++++++.++++|||+
T Consensus 279 ~Ea~a~G~Pvi-------~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 279 MEAMAMGLPVI-------STDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHHHHcCCCEE-------ecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999 999999999999998999999988 999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011779 456 HMAER 460 (477)
Q Consensus 456 ~~~~~ 460 (477)
.++++
T Consensus 350 ~~~~~ 354 (355)
T cd03799 350 KQAAR 354 (355)
T ss_pred HHhhc
Confidence 99875
No 35
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=6.3e-38 Score=305.14 Aligned_cols=326 Identities=21% Similarity=0.214 Sum_probs=248.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
|||++++.....||+++++..++++|.++||+|++++.... .........+||+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 78999998877799999999999999999999999995533 11223446799999
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-----------------------------h-hHh---hcc-
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------------------L-DYV---KHL- 200 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----------------------------~-~~~---~~~- 200 (477)
|+|......+......... ...++++++|+....... . .+. ..+
T Consensus 56 h~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 9987433222111111111 125788888875321100 0 000 001
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
...+.+++.+....+.+. ..+.++..++.++|||+|.+.+.+.. +...++.+++++++.++++.|+..
T Consensus 134 ~~~~~~v~~s~~~~~~~~----~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~ 201 (365)
T cd03825 134 DLNLTIVAPSRWLADCAR----SSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGG 201 (365)
T ss_pred cCCcEEEehhHHHHHHHH----hccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCC
Confidence 122334555555444443 34446778999999999998775432 345677788888888888887776
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC---CHHHHHH
Q 011779 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLA 355 (477)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~---~l~~~~~ 355 (477)
. .||++.+++++..+.+. ..++++++++|++. .... .++.++|.++|+.. ++..+|+
T Consensus 202 ~~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~-----~~~~-------~~~~~~v~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 202 TDPRKGFDELIEALKRLAER------WKDDIELVVFGASD-----PEIP-------PDLPFPVHYLGSLNDDESLALIYS 263 (365)
T ss_pred CccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCc-----hhhh-------ccCCCceEecCCcCCHHHHHHHHH
Confidence 5 89999999999988641 14789999999983 2211 14557899999875 5889999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.||++++||. .|+||++++|||++|+||| +++.||..|++.++.+|++++..| ++++++++.+++++++
T Consensus 264 ~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI-------~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 264 AADVFVVPSL--QENFPNTAIEALACGTPVV-------AFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPD 332 (365)
T ss_pred hCCEEEeccc--cccccHHHHHHHhcCCCEE-------EecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHH
Confidence 9999999999 9999999999999999999 999999999999988999999988 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.+.++++++++.+.++|||+.++++|.++|+++
T Consensus 333 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 333 EREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999863
No 36
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.5e-37 Score=300.70 Aligned_cols=348 Identities=20% Similarity=0.181 Sum_probs=251.3
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE------eccchhhHHHh
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI------SAKGQETINTA 148 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~------~~~~~~~~~~~ 148 (477)
||+|+++..+ .||.++++.+|+++|.+.||+|++++............ ...+.... .........+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG------EQEVVRVIVLDNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC------cccceeeeecCCchhHHHHHHHHhh
Confidence 6899998877 49999999999999999999999998544332110000 00011111 11122345567
Q ss_pred cCCcEEEEcCcc--hhhHHHHHhhhCCCccccceeeeeeeccccc----chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 149 LKADLIVLNTAV--AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 149 ~~~DiV~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.+||+||++... ..................++++++|+..... ........++.++.+++.| .+...+...
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHh
Confidence 899999997621 1111111111111112257889999862111 1223344567888899886 222222211
Q ss_pred hhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
.. ...++.++|||++...+..... .++...+.++++++++|++.+.||++.+++|+.++.+
T Consensus 152 ~~---~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~----- 212 (366)
T cd03822 152 RA---YPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA----- 212 (366)
T ss_pred hc---CCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-----
Confidence 11 1468999999999876543221 1334445678999999999999999999999999876
Q ss_pred ccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc-c--CCHHHHHHhcCEEEEcCCCCCC--cccHHHHH
Q 011779 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITIE 377 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~--~~l~~~~~~aDv~v~pS~~~~E--~~g~~~lE 377 (477)
+.++++|+++|++............++++++++.++|.|+|. . +++..+|+.||++++||. .| ++|++++|
T Consensus 213 --~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~E 288 (366)
T cd03822 213 --KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAY 288 (366)
T ss_pred --hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHH
Confidence 568999999999853221111111134788899999999986 3 789999999999999999 89 99999999
Q ss_pred HHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 378 AMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 378 Ama~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
||++|+||| +++.|+ .+.+.++.+|++++++| +++++++|..+++|++.+.+|++++++.+++ |||+.+
T Consensus 289 a~a~G~PvI-------~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~ 357 (366)
T cd03822 289 AIGFGKPVI-------STPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERV 357 (366)
T ss_pred HHHcCCCEE-------ecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHH
Confidence 999999999 999999 77777788999999998 9999999999999999999999999999977 999999
Q ss_pred HHHHHHHHH
Q 011779 458 AERIAVVLK 466 (477)
Q Consensus 458 ~~~~~~~~~ 466 (477)
++++.++|+
T Consensus 358 ~~~~~~~~~ 366 (366)
T cd03822 358 AERYLRLLA 366 (366)
T ss_pred HHHHHHHhC
Confidence 999999874
No 37
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.5e-37 Score=300.20 Aligned_cols=337 Identities=12% Similarity=0.090 Sum_probs=235.2
Q ss_pred CccEEEEEeccCCC--CchhhHHHHHHHHHHhCC-cEEEEEecCCCCChhhH--------------Hhhhh----hh-hh
Q 011779 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEV--------------IYSLE----HK-MW 130 (477)
Q Consensus 73 ~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~--------------~~~~~----~~-~~ 130 (477)
++|||++++..+.| +|.......++.+|+++| |+|+|+.+..+..+... ..... .. ..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 56999999998877 898889999999999999 89999997654211000 00000 00 00
Q ss_pred hcCcEE--Eec------------cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh--
Q 011779 131 DRGVQV--ISA------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-- 194 (477)
Q Consensus 131 ~~g~~v--~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-- 194 (477)
..++++ ++- ......++..+||+||++++....+.........+ . ..++.++|+...+|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-CcEEEEECCChHHHHHHhc
Confidence 011111 111 11335556789999999998887775222222111 1 23677888844333211
Q ss_pred ------hHh----hcc--cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 195 ------DYV----KHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 195 ------~~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
... .++ ...+.+++.|....+ +. ..+....+|||.+.|.+.... .++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKLK---------LEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCccc---------Hhh
Confidence 011 111 124555666643322 11 124445689999988765321 222
Q ss_pred hhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 263 SLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 263 ~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
..+ ..+ .++++|+||+.++||++.+++|++++.+ ..++++|+|+|+| |.+++++++++++++..+
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK-------ELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh-------hCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEE
Confidence 222 233 3468899999999999999999998866 5588999999999 789999999999988644
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+ |.|. .+..++|+.+|+||+||. .|+||++++||||||+||| +++.++ .+++.++.+|++++ | .
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVV-------a~~~~~-~~~v~~~~ng~~~~--~--~ 350 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVV-------CANHPS-NEFFKQFPNCRTYD--D--G 350 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEE-------EecCCC-cceeecCCceEecC--C--H
Confidence 4 7786 566689999999999999 9999999999999999999 999987 59999999999984 5 8
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++++++.+++.++. +.++.+++ +.|||+..+++++++|+-
T Consensus 351 ~~~a~ai~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 351 KGFVRATLKALAEEP--APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHHHHHHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 999999999998532 23333333 479999999999999864
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.5e-37 Score=298.96 Aligned_cols=332 Identities=26% Similarity=0.259 Sum_probs=252.2
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
|||++++.++| ||.++++.+++++|.++||+|++++......... ....+.++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD--------EERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh--------hhccCceEEEeecccccccccccHH
Confidence 68999988776 8899999999999999999999999665432211 1111222221110
Q ss_pred -hhhH-HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeeehhh
Q 011779 142 -QETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 142 -~~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~ 213 (477)
...+ ....+||+||+|.+............ ...+.+.++|+..... +.......+..++.+++.|...
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 0111 23678999999986554333322222 1246677788632111 1222233556778888888777
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
.+.+.. .... ..++.++|||+|.+.+.+.... +. .....+.+.++|+++||+.+.||++.+++|+.
T Consensus 149 ~~~~~~----~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 149 AETSPV----LRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred HHHHHH----hcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHH
Confidence 765543 2222 3689999999999877654221 00 22334467789999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~ 371 (477)
++ .+++|+|+|+| +....+++.+++.++.++|+|+|++ +++..+|+.||++++||....|+|
T Consensus 215 ~l-----------~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 215 AL-----------PDAPLVIVGEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred hc-----------cCcEEEEEeCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 87 37999999999 6788899999889999999999997 568999999999999996336999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
|++++|||++|+||| +++.++..+.+.+ +.+|++++++| +++++++|.++++|++.+++|++++++.+++
T Consensus 279 g~~~~Ea~~~g~Pvi-------~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 279 GIVLLEAMAFGKPVI-------STEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred chHHHHHHHcCCCEE-------ecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999998876 88999999988 9999999999999999999999999999999
Q ss_pred hcCHHHHH
Q 011779 451 IFQEHHMA 458 (477)
Q Consensus 451 ~fs~~~~~ 458 (477)
+|||+.++
T Consensus 350 ~~s~~~~~ 357 (357)
T cd03795 350 EFTADRMV 357 (357)
T ss_pred hcchHhhC
Confidence 99999864
No 39
>PLN00142 sucrose synthase
Probab=100.00 E-value=2.7e-37 Score=312.20 Aligned_cols=219 Identities=18% Similarity=0.248 Sum_probs=177.8
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHH-----------HHHHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAK-----------RVLREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~-----------~~~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+++.+||+|+|...|.|....... .......++.+|+ ++++++|+++||+.+.||++.+++|+.++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 5689999999999988754321110 0011223456675 45667899999999999999999999987
Q ss_pred HHHHHhhccCcCceEEEEEecCCC-c---ch---HHHHHHHHHHHhcCCCCcEEEcccc------CCHHHHHH-hcCEEE
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMN-A---QT---KFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLV 361 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~-~---~~---~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~~~~~-~aDv~v 361 (477)
.+ ..++++|+|+|+|.+ . +. ...+++.++++++++.++|.|+|.+ .++..+++ ++|+||
T Consensus 599 ~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 54 346899999998721 1 11 1235678889999999999999863 23555555 479999
Q ss_pred EcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH----hCHHHH
Q 011779 362 QNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERR 437 (477)
Q Consensus 362 ~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~ 437 (477)
+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|++++++| +++++++|.+++ .|++.+
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVV-------ATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTF-------ATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEE-------EcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 9999 9999999999999999999 999999999999999999999999 999999987654 699999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++|+++|++++.++|||+.++++++++.
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 40
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.6e-37 Score=302.31 Aligned_cols=334 Identities=13% Similarity=0.079 Sum_probs=224.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh---h--------hhhhh-----hhcCcEE-E
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY---S--------LEHKM-----WDRGVQV-I 137 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~---~--------~~~~~-----~~~g~~v-~ 137 (477)
||||++......||+++.+.+|++.|.++||+|.++............. . ..... +..+... .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 7999999999999999999999999999999999998554332210000 0 00000 0000000 0
Q ss_pred eccch-hhHHHhcCCcEEEEcCcchh---hH-HHHHh-hhCCCccccceeeeeeeccccc--------------------
Q 011779 138 SAKGQ-ETINTALKADLIVLNTAVAG---KW-LDAVL-KEDVPRVLPNVLWWIHEMRGHY-------------------- 191 (477)
Q Consensus 138 ~~~~~-~~~~~~~~~DiV~~~~~~~~---~~-~~~~~-~~~~~~~~~~~i~~~h~~~~~~-------------------- 191 (477)
..... +.+.+..+|||||+|..... .. +.... .........|++|+.|+.....
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 11111 22325779999999985442 21 11110 0111223368999999976331
Q ss_pred ----chh--------hH-------hhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHH
Q 011779 192 ----FKL--------DY-------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (477)
Q Consensus 192 ----~~~--------~~-------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (477)
+.. .+ ...+...+.+++.|....+.+.. .++ ..++.+||||+|.+.+.+.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~----~~~--~~~i~vI~NGid~~~~~~~~~~-- 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNS----LYG--PGRCRIINNGIDMATEAILAEL-- 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHH----HcC--CCCEEEeCCCcCcccccccccc--
Confidence 100 00 00011223456666666655432 333 4689999999997543221110
Q ss_pred HHHHHHHHHHhhCCCCCCeEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHH
Q 011779 253 KRVLREHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (477)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~il~vGrl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (477)
...+ .++++.+|+++|+. .+.||++.+++|+..+. ++++|+++|+|++ ..
T Consensus 233 -----~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~-----~~---- 284 (405)
T PRK10125 233 -----PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSP-----FT---- 284 (405)
T ss_pred -----cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCc-----cc----
Confidence 0001 12566789999994 36899999999998752 5799999998731 10
Q ss_pred HHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 331 YVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 331 ~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
.++|.++|+. .++.++|++||+||+||. .|+||++++||||||+||| +|++||++|++.++
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVV-------at~~gG~~Eiv~~~ 348 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVI-------ATHSDAAREVLQKS 348 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEE-------EeCCCChHHhEeCC
Confidence 1468888864 568999999999999999 9999999999999999999 99999999999775
Q ss_pred CceeeecCCCCCHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 408 TTGLLHPVGKEGITPLAKNIVKLATHVERRLT----MGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 408 ~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~----~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+|++++++| +++|++.+ +++.+++ +.+++++.+.+.||++.++++|+++|+++
T Consensus 349 -~G~lv~~~d--~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 349 -GGKTVSEEE--VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred -cEEEECCCC--HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999 99999854 3343333 23568888889999999999999999863
No 41
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.3e-37 Score=299.23 Aligned_cols=321 Identities=16% Similarity=0.133 Sum_probs=233.2
Q ss_pred cEEEEEeccC------CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhh--cCcE---EEeccchh
Q 011779 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQ---VISAKGQE 143 (477)
Q Consensus 75 ~~Il~v~~~~------~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~--~g~~---v~~~~~~~ 143 (477)
|||+++++.+ ..||+++++.+|+++|.++||+|++++...+................ .... ........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 7999999876 34899999999999999999999999966543211100000000000 0000 00011223
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
.+.+..+||+||+|+.....+ .... ...+++++.|+........ ........+..++.+......+..
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~--~~~~-----~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~---- 148 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP--FARP-----LPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP---- 148 (335)
T ss_pred HHHhcCCCCEEEecCcccchh--hhcc-----cCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc----
Confidence 455668999999998666554 1111 2256888999875443332 233334555666666666554332
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
..++.+||||+|.+.|.+.+ .++..++++||+.+.||++.+++++++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred -----ccccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 16899999999998775421 455688999999999999999998754
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (477)
.+++|+++|+|. ..+.+.....+.. +.++|+|+|++ +++..+|+.+|++++||. +.|+||++++|||+
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHh
Confidence 578999999983 3444444444443 56899999986 557899999999999997 26999999999999
Q ss_pred cCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 381 FQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
||+||| +++.||..|++.++.+|+++++ +++++++|.++...+ .+++++.+.++|||+.++++
T Consensus 267 ~G~PvI-------~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~ 329 (335)
T cd03802 267 CGTPVI-------AFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDD 329 (335)
T ss_pred cCCCEE-------EeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHH
Confidence 999999 9999999999999999999974 799999999986543 24677788899999999999
Q ss_pred HHHHHH
Q 011779 461 IAVVLK 466 (477)
Q Consensus 461 ~~~~~~ 466 (477)
|.++|+
T Consensus 330 ~~~~y~ 335 (335)
T cd03802 330 YLALYR 335 (335)
T ss_pred HHHHhC
Confidence 999984
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=4.9e-37 Score=299.09 Aligned_cols=348 Identities=19% Similarity=0.172 Sum_probs=249.6
Q ss_pred EEEEEeccCC--CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh--------hhh-hhhcCcEEEeccc-hh
Q 011779 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--------EHK-MWDRGVQVISAKG-QE 143 (477)
Q Consensus 76 ~Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--------~~~-~~~~g~~v~~~~~-~~ 143 (477)
||+++++.+. .||+++++.+++++|.+.||+|++++.............. ... ........+.... ..
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 5899998874 4888999999999999999999999965543221110000 000 0000000000000 11
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--hhh----------Hhhcccccccceeeeh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD----------YVKHLPLVAGAMIDSH 211 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~~----------~~~~~~~~~~~~~~s~ 211 (477)
......++|+||+|+.............+. ...+++++.|+....+. ... ....+...+.+++.+.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARK--YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHH--hCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 222346899999997433222221111111 22567788887543321 000 1112233444555543
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
....... ......++.++|||+|.+.+.+.... .. |+.++.+.++++++++||+.+.||++.++++
T Consensus 159 ~~~~~~~------~~~~~~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 159 QEAAEIR------RLGLKAPIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred HHHHHHH------hhCCcccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 3333222 12455789999999999877654321 11 6777778889999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.++.+ +.++++|+++|.+.. .+...++.+++++++.++|.|+|++ +++..+|+.||++++||. .|
T Consensus 225 ~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e 292 (375)
T cd03821 225 FAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SE 292 (375)
T ss_pred HHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cC
Confidence 999876 568999999998742 3556666667889999999999997 489999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
+||++++|||++|+||| +++.+|..+++.+ ..|++++.+ .++++++|.+++++++.++++++++++.+.
T Consensus 293 ~~~~~~~Eama~G~PvI-------~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 361 (375)
T cd03821 293 NFGIVVAEALACGTPVV-------TTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVE 361 (375)
T ss_pred CCCcHHHHHHhcCCCEE-------EcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999988 788888754 699999999999999999999999999989
Q ss_pred HhcCHHHHHHHHH
Q 011779 450 EIFQEHHMAERIA 462 (477)
Q Consensus 450 ~~fs~~~~~~~~~ 462 (477)
++|+|+.+++++.
T Consensus 362 ~~~s~~~~~~~~~ 374 (375)
T cd03821 362 ERFSWTAIAQQLL 374 (375)
T ss_pred HhcCHHHHHHHhh
Confidence 9999999999875
No 43
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.4e-36 Score=292.54 Aligned_cols=325 Identities=22% Similarity=0.265 Sum_probs=252.4
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe---------------c
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS---------------A 139 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~---------------~ 139 (477)
||+++++.+. .||+++.+..++++|.+.||+|++++........ ... ..++.+.. .
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 72 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF---YEL-----DPKIKVIDLGDKRDSKLLARFKKL 72 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc---ccc-----CCccceeecccccccchhccccch
Confidence 5889998887 6999999999999999999999999965543000 000 11222211 1
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhh-----HhhcccccccceeeehhhH
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~ 214 (477)
.....+.+..+||+||++......++.. ...+. .+++.+.|.......... ....++.++.+++.+....
T Consensus 73 ~~~~~~l~~~~~d~i~~~~~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 147 (348)
T cd03820 73 RRLRKLLKNNKPDVVISFLTSLLTFLAS-LGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDR 147 (348)
T ss_pred HHHHHhhcccCCCEEEEcCchHHHHHHH-Hhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHH
Confidence 2223455668999999998662222222 22211 367777887643332211 3345678888888888776
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
.. .......++.++|||++...+... .+.+++.++++|++.+.||++.+++++.+
T Consensus 148 ~~-------~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~ 202 (348)
T cd03820 148 AL-------YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAK 202 (348)
T ss_pred HH-------hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHH
Confidence 11 223466789999999998765432 12567899999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.+ ..++++|+|+|++ +....+++.+++.++.++|.+.|..+++..+|+.||++++||. .|++|++
T Consensus 203 l~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~ 268 (348)
T cd03820 203 IAK-------KHPDWKLRIVGDG-----PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMV 268 (348)
T ss_pred HHh-------cCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHH
Confidence 876 5689999999998 5677788889999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCC-ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
++|||++|+||| +++.++ ..+++.++.+|+++++.| +++++++|.++++|++.+++|++++++.+ +.|+
T Consensus 269 ~~Ea~a~G~Pvi-------~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~ 338 (348)
T cd03820 269 LLEAMAFGLPVI-------SFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESA-ERFS 338 (348)
T ss_pred HHHHHHcCCCEE-------EecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhC
Confidence 999999999999 998754 567777777999999988 99999999999999999999999997655 7799
Q ss_pred HHHHHHHHH
Q 011779 454 EHHMAERIA 462 (477)
Q Consensus 454 ~~~~~~~~~ 462 (477)
|++++++|.
T Consensus 339 ~~~~~~~~~ 347 (348)
T cd03820 339 IENIIKQWE 347 (348)
T ss_pred HHHHHHHhc
Confidence 999999875
No 44
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2e-37 Score=309.68 Aligned_cols=276 Identities=22% Similarity=0.249 Sum_probs=226.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc--------------cchhhH--------hhcccccccc
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--------------YFKLDY--------VKHLPLVAGA 206 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------~~~~~~--------~~~~~~~~~~ 206 (477)
.++|+||+|+.....++....+.. ...|++++.|+.... ..+..+ ...++.++.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 478999999864443433333322 225788999975211 001111 1234577788
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.+....+... .+|.+.+|+.+||||+|.+.|.+.... ..+++.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 888777665433 567788899999999999887654321 1235778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~ 366 (477)
.+++|++.+.+ +.|+++|+|+|+|+ .+..+.++++++++++++.++|+|+| .+++.++|+.+|++|+||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTD-EDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCC-cChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999999876 56899999999884 23357889999999999999999999 7899999999999999999
Q ss_pred CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec------CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.|+||++++|||+||+||| +|+.||..|++.+ |.+|++++++| +++++++|.++++|++.+++|
T Consensus 380 -~Eg~p~~vlEAma~G~PVV-------atd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~ 449 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVV-------ATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAM 449 (475)
T ss_pred -hhcCChHHHHHHHcCCCEE-------ECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999 9999999999988 56999999998 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++.+++.|+|++++++|.++|+
T Consensus 450 ~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 450 GEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999999984
No 45
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=4.5e-36 Score=294.64 Aligned_cols=342 Identities=21% Similarity=0.171 Sum_probs=243.9
Q ss_pred EEEEEeccCCCC-chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhh---hhcCcEEEecc-c---h---
Q 011779 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKM---WDRGVQVISAK-G---Q--- 142 (477)
Q Consensus 76 ~Il~v~~~~~~g-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~---~~~g~~v~~~~-~---~--- 142 (477)
.|.|++|+.+.| |+||++.+.+.+|.+. |++|+|+|.................+ ...++.++... . .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 588999999996 8999999999999998 89999999776554321111111111 12344432221 0 0
Q ss_pred ------------h------hHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeeccc--ccc---------
Q 011779 143 ------------E------TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRG--HYF--------- 192 (477)
Q Consensus 143 ------------~------~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~--~~~--------- 192 (477)
. ......+||+++.++.... ..+...+. ..+++.++|-... ...
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~------~~~~i~y~h~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG------GCPVGAYVHYPTISTDMLQKVRSREAS 155 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc------CCeEEEEecCCcchHHHHHHHhhcccc
Confidence 0 1111347999988874433 22222222 1478888993200 000
Q ss_pred ----------------hh--------hHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhh
Q 011779 193 ----------------KL--------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 248 (477)
Q Consensus 193 ----------------~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~ 248 (477)
+. .+...+..++.++++|..+.+.+.+. ++. ..++.+|+||+|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~----~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL----WKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH----hCc-CCCcEEEcCCCCHHHhcccc
Confidence 00 11223467788899988888777653 332 24799999999988765432
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-chHHHHH
Q 011779 249 DNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESE 327 (477)
Q Consensus 249 ~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~ 327 (477)
. ....+..+|+++||+.+.||++.+++|+.++.+..++. ..++++|+|+|++... +.++.++
T Consensus 231 ~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~ 293 (419)
T cd03806 231 L---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVED 293 (419)
T ss_pred c---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHH
Confidence 1 01245679999999999999999999999987632110 0135999999987432 2347788
Q ss_pred HHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-eEEe
Q 011779 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIV 404 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v 404 (477)
++++++++++.++|+|+|.. +++..+|+.||++|+||. .|+||++++||||+|+||| +++.||. .|++
T Consensus 294 L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvI-------a~~~ggp~~~iv 364 (419)
T cd03806 294 LKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPL-------AHASGGPLLDIV 364 (419)
T ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEE-------EEcCCCCchhee
Confidence 99999999999999999985 789999999999999998 8999999999999999999 9999885 5788
Q ss_pred e---cCCceeeecCCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 405 V---NGTTGLLHPVGKEGITPLAKNIVKLATHVE-RRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 405 ~---~~~~G~l~~~~d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
. ++.+|++++ | +++++++|.+++++++ .++.+ .++++.+.++||++.+.+
T Consensus 365 ~~~~~g~~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 365 VPWDGGPTGFLAS--T--AEEYAEAIEKILSLSEEERLRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred eccCCCCceEEeC--C--HHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhhCHHHhcc
Confidence 8 889999974 5 9999999999999654 45555 555556778999998754
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=9.7e-37 Score=296.29 Aligned_cols=342 Identities=20% Similarity=0.208 Sum_probs=251.5
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH--hhh-hhhh-hhcCcEE--EeccchhhHHH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI--YSL-EHKM-WDRGVQV--ISAKGQETINT 147 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~-~~~~-~~~g~~v--~~~~~~~~~~~ 147 (477)
||+++++.+++ ||++.++..++++|.++||+|++++........... ..+ .... ....... ..........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 58999987766 788899999999999999999999965432111000 000 0000 0001111 11122234445
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccceeeehhhHH
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s~~~~~ 215 (477)
..+||+||+++.....+........ ...+++.++|+....+. .......++.++.+++.+....+
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARR---LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHH---cCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 6799999999754433323222221 22467777886432211 11122334567777887777766
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+.. ....++.+++||+|.+.+.+.... ...+++++ +.++++++++|++.+.||++.+++++.++
T Consensus 158 ~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l 222 (364)
T cd03814 158 ELRA-------RGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPL 222 (364)
T ss_pred HHhc-------cCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHh
Confidence 3332 234679999999999877654321 23344555 46678999999999999999999999998
Q ss_pred HHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
.+ + ++++|+++|.| ++.+.++ +..++|.|+|+ .+++..+|+.||++++||. .|+||+
T Consensus 223 ~~-------~-~~~~l~i~G~~-----~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~ 281 (364)
T cd03814 223 RR-------R-PPVRLVIVGDG-----PARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGL 281 (364)
T ss_pred hh-------c-CCceEEEEeCC-----chHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCc
Confidence 65 4 78999999998 4455444 44579999996 4789999999999999999 999999
Q ss_pred HHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 374 ITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
+++|||++|+||| +++.++..|++.++.+|+++++.| .++++++|.+++.|++.++++++++++.+ +.|+
T Consensus 282 ~~lEa~a~g~PvI-------~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~ 351 (364)
T cd03814 282 VVLEAMASGLPVV-------APDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRS 351 (364)
T ss_pred HHHHHHHcCCCEE-------EcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcC
Confidence 9999999999999 999999999999989999999988 99999999999999999999999999988 7799
Q ss_pred HHHHHHHHHHHHH
Q 011779 454 EHHMAERIAVVLK 466 (477)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (477)
|+.+++++.++|+
T Consensus 352 ~~~~~~~~~~~~~ 364 (364)
T cd03814 352 WEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999873
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=3.2e-36 Score=296.07 Aligned_cols=347 Identities=13% Similarity=0.066 Sum_probs=243.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--------- 143 (477)
+.++|++++... .|.+.++.+++++|+++||+|+|++...+... .......|+.++.+....
T Consensus 2 ~~~~~~~~~~~~--~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGD--IGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-------DEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEecc--cCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-------HHHhcCCCEEEEECCCCccccccchHH
Confidence 356788877533 67777789999999999999999996543321 111234566665543211
Q ss_pred ----------------hHHHhcCCcEEEEcCcchh--hHHHHHhhhCCCccccceeeeeeeccccc--------------
Q 011779 144 ----------------TINTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------- 191 (477)
Q Consensus 144 ----------------~~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------- 191 (477)
.+....+||+||+|++... .+...+..... ..+++.++|+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~---~~~~V~~~h~~~~~~~~~~~~~~~~~~~~ 149 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR---RTKLIIDWHNYGYTILALKLGENHPLVRL 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh---CCeEEEEcCCchHHHHhcccCCCCHHHHH
Confidence 0223468999999874432 11122212111 256778888753100
Q ss_pred chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH---------
Q 011779 192 FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--------- 262 (477)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~--------- 262 (477)
+.......++.++.+++.|....+.+.+ ++.+.+++.+||||. ...|.+.+.... ...+++
T Consensus 150 ~~~~e~~~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~ 219 (415)
T cd03816 150 AKWYEKLFGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTRE 219 (415)
T ss_pred HHHHHHHHhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccccc
Confidence 0011122346788899998888877653 467889999999994 455555432211 111111
Q ss_pred ----hhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 263 ----SLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 263 ----~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
..++ +++..+++++||+.+.||++.+++|+..+.+...+. ...|+++|+|+|+| +.+++++++++++++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l 293 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKG-----PLKEKYLERIKELKL 293 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecC-----ccHHHHHHHHHHcCC
Confidence 1122 244567888999999999999999999986532110 02478999999999 678999999999999
Q ss_pred CCcEEEcccc--CCHHHHHHhcCEEEEcCCC-CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 338 QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
.+.+.+.|++ +++..+|++||+++.|+.. ..|++|++++||||||+||| +++.||..|++.++.+|++++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI-------~s~~~~~~eiv~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC-------ALDFKCIDELVKHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEE-------EeCCCCHHHHhcCCCCEEEEC
Confidence 7555556764 8999999999999975431 15889999999999999999 999999999999999999994
Q ss_pred CCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 415 VGKEGITPLAKNIVKLATH---VERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
| +++++++|.++++| ++.+++|++++++..+ ++|+...++
T Consensus 367 --d--~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 367 --D--SEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred --C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 6 99999999999999 9999999999998774 566554443
No 48
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=6.9e-36 Score=290.61 Aligned_cols=330 Identities=16% Similarity=0.189 Sum_probs=237.6
Q ss_pred EEEEEecc-CCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------
Q 011779 76 LVLLVSHE-LSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (477)
Q Consensus 76 ~Il~v~~~-~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------- 142 (477)
||+++... +++ ||+++++.+++++|.++||+|+|++........ .....|++++..+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHH
Confidence 57888654 333 999999999999999999999999965443211 112345555433211
Q ss_pred --hhHHH----hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--ch---hh-----Hhhcccccccc
Q 011779 143 --ETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK---LD-----YVKHLPLVAGA 206 (477)
Q Consensus 143 --~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--~~---~~-----~~~~~~~~~~~ 206 (477)
..+.. ..++|+||...+....+...+.. ...++++++|+..... +. .. ....+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFLPLLRL-----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHHHHHHh-----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 11111 23444444444433222222111 1257788888753211 00 11 11234567788
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.|....+.+.+ .++.+ . .+||||+|...+.+ +...++.++.+++. .++++||+.+.||++
T Consensus 148 i~~s~~~~~~~~~----~~~~~--~-~~i~ngv~~~~~~~----------~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEYLKE----KYGRD--S-TYIPYGADHVVSSE----------EDEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHHHHH----hcCCC--C-eeeCCCcChhhcch----------hhhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 8888888777653 45533 2 89999999876543 12234455655544 577999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH-hcCCCCcEEEcccc--CCHHHHHHhcCEEEEc
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~p 363 (477)
.+++|++++. ++++|+++|+|+. ...+.+.+. .+++.++|+|+|++ +++..+|+.||++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999999873 3799999999842 233333333 56777899999986 6688999999999999
Q ss_pred CCCCC-CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 364 SQAWG-ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 364 S~~~~-E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
|. . |+||++++|||++|+||| +++.|+..|++.+ +|++++++| . ++++|.+++++++.+.++++
T Consensus 275 s~--~~e~~~~~~~EAma~G~PvI-------~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 275 GH--SVGGTNPSLLEAMAYGCPVL-------ASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAK 339 (363)
T ss_pred Cc--cCCCCChHHHHHHHcCCCEE-------EecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHH
Confidence 98 6 999999999999999999 9999999999955 889998765 3 99999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++.+.++|||+.++++++++|+
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999889999999999999884
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=7e-36 Score=288.98 Aligned_cols=331 Identities=22% Similarity=0.267 Sum_probs=251.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------------- 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-------------- 141 (477)
||+++++. .||.+.++..++++|.+.||+|++++....... .....++.++..+.
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 58899887 678889999999999999999999996654421 12233444432211
Q ss_pred --hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------hhHhhcccccccceeee
Q 011779 142 --QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~~~~~~~~~~~~~~~~s 210 (477)
.....+..+||+||+++.....+....... . ..+++++..|+....... ......+...+.+++.|
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARL-A--GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHH-c--CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 123445679999999975443322222221 1 124566777765322111 11223345667888888
Q ss_pred hhhHHHHHHHhHhhhccC-CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
....+.+.+. ...+ ..++.++++|+|.+.+.+.... .+.++++|+++|++.+.||++.++
T Consensus 147 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li 207 (359)
T cd03808 147 EDDRDLALKL----GIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELL 207 (359)
T ss_pred HHHHHHHHHh----cCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHH
Confidence 8887776643 2222 4567888999998876544320 125778999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHH-HHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~-~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~ 368 (477)
+++..+.+ +.++++|+|+|.+.. ...... .+.+.+..++|.|+|+.+++.++|+.||++++||. .
T Consensus 208 ~~~~~l~~-------~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~ 273 (359)
T cd03808 208 EAARILKA-------KGPNVRLLLVGDGDE-----ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--R 273 (359)
T ss_pred HHHHHHHh-------cCCCeEEEEEcCCCc-----chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--c
Confidence 99999865 568999999999843 222222 36667777899999999999999999999999999 8
Q ss_pred CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 369 E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
|++|++++|||++|+||| +++.++..+++.++.+|++++++| +++++++|.+++.|++.++++++++++.+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi-------~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 344 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVI-------ATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRA 344 (359)
T ss_pred cCcchHHHHHHHcCCCEE-------EecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999899999999988 99999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHH
Q 011779 449 KEIFQEHHMAERIA 462 (477)
Q Consensus 449 ~~~fs~~~~~~~~~ 462 (477)
.++|+|+.+++++.
T Consensus 345 ~~~~s~~~~~~~~~ 358 (359)
T cd03808 345 EEEFDEEIVVKKLL 358 (359)
T ss_pred HHhcCHHHHHHHhh
Confidence 99999999999875
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=7.6e-36 Score=290.73 Aligned_cols=347 Identities=21% Similarity=0.285 Sum_probs=259.8
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhh-------hcCcEEEeccchhhHH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-------DRGVQVISAKGQETIN 146 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~-------~~g~~v~~~~~~~~~~ 146 (477)
||++++..++| ||++..+..++++|.+.||+|++++................... ................
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 58899988766 88889999999999999999999996554322110000000000 0000000011112335
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------------hhHhhcccccccceeeeh
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------LDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------------~~~~~~~~~~~~~~~~s~ 211 (477)
+..+||+||++++............. ...++++++|.....+.. ......+..++.+++.+.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARK---LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHH---cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 66899999999875443333322222 125677888864321110 122334567788888888
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
...+.+.+ ++.+ .++.++|||+|...+.+... ...++.++.++++++|+++|++.+.||++.++++
T Consensus 158 ~~~~~~~~-----~~~~-~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 158 KIADLLRE-----YGVK-RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred HHHHHHHh-----cCCC-CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHH
Confidence 76666553 3433 45999999999887765432 2236667777888999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+..+.+ +.++++|+++|+| +..+.+++.++++++.++|.|+|++ +++..+|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e 289 (374)
T cd03817 224 FARLLK-------EEPDVKLVIVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TE 289 (374)
T ss_pred HHHHHH-------hCCCeEEEEEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--cc
Confidence 998876 4578999999998 6788899999999999999999986 789999999999999999 99
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
++|++++|||++|+||| +++.|+..+++.++.+|+++++.+ . +++++|.+++++++.+++|++++++.++
T Consensus 290 ~~~~~~~Ea~~~g~PvI-------~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 290 TQGLVLLEAMAAGLPVV-------AVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CcChHHHHHHHcCCcEE-------EeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999877 5 9999999999999999999999999886
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~ 467 (477)
+.+ +.+++.++|++
T Consensus 360 ~~~----~~~~~~~~~~~ 373 (374)
T cd03817 360 KFS----FAKKVEKLYEE 373 (374)
T ss_pred HHH----HHHHHHHHHhc
Confidence 644 66777777654
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=7.8e-36 Score=289.57 Aligned_cols=351 Identities=25% Similarity=0.272 Sum_probs=269.9
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE--------EeccchhhH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--------ISAKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v--------~~~~~~~~~ 145 (477)
||+++++.+++ ||+..++..+++.|.+.||+|.+++......................... ........+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58888887655 78889999999999999999999996654432111000000000000000 000112344
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc-----------hhhHhhcccccccceeeehhhH
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-----------KLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
.+..+||+||++............. . ...++++++|+...... .......+...+.+++.+....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~--~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAAR--L--LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHH--h--cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 4567999999998665544331111 1 12578888998654332 1223344567788888888877
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+ .++.+..++.++|||++...+.+.. ...+.......+.++++++|++...||++.+++++..
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 157 EELRE----LGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred HHHHh----cCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 77665 4444446899999999988765432 2233344555778999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ +.++++|+++|++ +....+++.+++++..++|.+.|++ +++..+|+.||++++|+. .|++|
T Consensus 224 ~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~ 289 (374)
T cd03801 224 LRK-------EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFG 289 (374)
T ss_pred Hhh-------hcCCeEEEEEeCc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hcccc
Confidence 876 5578999999988 7888889998889999999999997 999999999999999999 89999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.++..+++.++.+|+++++.| +++++++|.+++++++.+.++++++++.+.+.|
T Consensus 290 ~~~~Ea~~~g~pvI-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03801 290 LVLLEAMAAGLPVV-------ASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERF 360 (374)
T ss_pred chHHHHHHcCCcEE-------EeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 999999999999889999999988 999999999999999999999999998899999
Q ss_pred CHHHHHHHHHHHHH
Q 011779 453 QEHHMAERIAVVLK 466 (477)
Q Consensus 453 s~~~~~~~~~~~~~ 466 (477)
+|+++++++.++|+
T Consensus 361 ~~~~~~~~~~~~~~ 374 (374)
T cd03801 361 SWDRVAARTEEVYY 374 (374)
T ss_pred CHHHHHHHHHHhhC
Confidence 99999999998873
No 52
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.3e-35 Score=291.41 Aligned_cols=340 Identities=16% Similarity=0.130 Sum_probs=236.6
Q ss_pred EEEEeccC--CC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------
Q 011779 77 VLLVSHEL--SL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (477)
Q Consensus 77 Il~v~~~~--~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------- 140 (477)
||++++.+ ++ +|+...+++++++|++. |+|++++......+......+...+. .+.+++..
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 77 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCE--EVCVVPLDPRVARLRSLLGLL 77 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhh--eeEEeecCcHHHHHHHHhhhc
Confidence 67888763 33 77788999999999886 99999996543322111111111111 11111110
Q ss_pred -----------------chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----------h
Q 011779 141 -----------------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------K 193 (477)
Q Consensus 141 -----------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------~ 193 (477)
..+...+..++|+||+++.....++.. . . ...+.+++.|+.....+ .
T Consensus 78 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~-~---~--~~~p~i~~~~d~~~~~~~~~~~~~~~~~ 151 (397)
T TIGR03087 78 TGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP-H---V--RGVPRIVDFVDVDSDKWLQYARTKRWPL 151 (397)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc-c---c--cCCCeEeehhhHHHHHHHHHHhccCcch
Confidence 012333457999999997644433221 0 1 11356667776421110 0
Q ss_pred ------------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHH
Q 011779 194 ------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (477)
Q Consensus 194 ------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (477)
......++.++.+++.|....+.+.+ ..+....++.+||||+|.+.|.+.... .
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~----------~ 217 (397)
T TIGR03087 152 RWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY----------P 217 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc----------c
Confidence 01122346778888888887776654 233455789999999999987654211 0
Q ss_pred HhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 262 ~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
...+.++.+|+|+|++.+.||++.+++++.++...+.+ +.|+++|+|+|+|+ . .+++ +++..++|
T Consensus 218 --~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~~----~l~~~~~V 282 (397)
T TIGR03087 218 --NPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAVR----ALAALPGV 282 (397)
T ss_pred --CCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHHH----HhccCCCe
Confidence 01224567899999999999999998655544333332 56899999999983 2 2233 33445689
Q ss_pred EEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHH
Q 011779 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~ 421 (477)
+|+|+++++..+|+.||++|+||. +.||+|++++|||++|+||| +|+.++. .+...+++|++++ +| ++
T Consensus 283 ~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV-------~t~~~~~-~i~~~~~~g~lv~-~~--~~ 350 (397)
T TIGR03087 283 TVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVV-------ASPEAAE-GIDALPGAELLVA-AD--PA 350 (397)
T ss_pred EEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEE-------ecCcccc-cccccCCcceEeC-CC--HH
Confidence 999999999999999999999997 26999999999999999999 8887542 3333456788887 66 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++++|.++++|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 351 ~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 351 DFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999875
No 53
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=6e-36 Score=288.59 Aligned_cols=337 Identities=24% Similarity=0.275 Sum_probs=258.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcC------cEEEeccchhhHHHhc
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG------VQVISAKGQETINTAL 149 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g------~~v~~~~~~~~~~~~~ 149 (477)
||+++++.+..||+++++..++++|.+.||+|.+++...................... ...........+.+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 5899999988899999999999999999999999996554322111000000000000 0001112224555667
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh------hHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
+||+||++.. ....+........ ..++++++|+........ .....+...+.+++.+....+.+.+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~---- 152 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK---- 152 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH----
Confidence 9999999987 2222222222221 357888999875433221 2345667888899988888877765
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
.++.+..++.++|||+|.+.+...... .. +++.+.++++++++|++.+.||++.+++++..+.+
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~------ 216 (353)
T cd03811 153 LLGIPPDKIEVIYNPIDIEEIRALAEE-------PL---ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK------ 216 (353)
T ss_pred hhcCCccccEEecCCcChhhcCcccch-------hh---hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh------
Confidence 444456789999999998877554321 00 34556788999999999999999999999999876
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
+.++++|+++|.+ +..+.+++.++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+
T Consensus 217 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G~ 288 (353)
T cd03811 217 -EGPDARLVILGDG-----PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALGT 288 (353)
T ss_pred -cCCCceEEEEcCC-----ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhCC
Confidence 5578999999998 6778888999999999999999999999999999999999999 8999999999999999
Q ss_pred CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 384 PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPL---AKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~l---a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
||| +++.||..|++.++.+|++++++| .+++ ++++..+..+++.++++++++++.+.++|+
T Consensus 289 PvI-------~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 289 PVV-------ATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CEE-------EcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999988 8888 788888888999999999988988888886
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=4.6e-35 Score=283.84 Aligned_cols=335 Identities=18% Similarity=0.169 Sum_probs=242.8
Q ss_pred EEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhh-------cCc-----E---EE
Q 011779 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-------RGV-----Q---VI 137 (477)
Q Consensus 76 ~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-------~g~-----~---v~ 137 (477)
||+++++.+++ ||+++++.+++++|.++||+|++++.................... ... . ..
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 58999988766 788899999999999999999999965443211100000000000 000 0 00
Q ss_pred ---eccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhH
Q 011779 138 ---SAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 138 ---~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
.....+.+.+..+||+||+++.............. ...+++.++|+........... ....+.+++.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~hd~~~~~~~~~~~--~~~~d~ii~~s~~~~ 155 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD---RGIPIVLTLHDYWLICPRQGLF--KKGGDAVIAPSRFLL 155 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh---cCCCEEEEEeeeeeecchhhhh--ccCCCEEEEeCHHHH
Confidence 00112345566899999999853222111111111 1257788888764322211111 123377888888777
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+. +....++.+++||+|...+.+... +.+.++++++++|++.+.||++.+++++.+
T Consensus 156 ~~~~~~-----~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 215 (359)
T cd03823 156 DRYVAN-----GLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKR 215 (359)
T ss_pred HHHHHc-----CCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHH
Confidence 766542 333568999999999987654321 234677899999999999999999999998
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ ++++|+++|.+. ......... +..++|.++|+. +++.++|+.||++++||.. .|++|
T Consensus 216 l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~-~e~~~ 277 (359)
T cd03823 216 LPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIW-PENFP 277 (359)
T ss_pred HHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcc-cCCCC
Confidence 854 689999999983 333332222 556799999997 8999999999999999973 79999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.++..|++.++.+|++++++| +++++++|.++++|++.++.+++++++....
T Consensus 278 ~~~~Ea~a~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 278 LVIREALAAGVPVI-------ASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI-- 346 (359)
T ss_pred hHHHHHHHCCCCEE-------ECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH--
Confidence 99999999999999 999999999999988999999998 9999999999999999999999999876633
Q ss_pred CHHHHHHHHHHHHH
Q 011779 453 QEHHMAERIAVVLK 466 (477)
Q Consensus 453 s~~~~~~~~~~~~~ 466 (477)
+.++++++++|+
T Consensus 347 --~~~~~~~~~~~~ 358 (359)
T cd03823 347 --EDQAEEYLKLYR 358 (359)
T ss_pred --HHHHHHHHHHhh
Confidence 889999999886
No 55
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=4.5e-36 Score=291.83 Aligned_cols=340 Identities=18% Similarity=0.134 Sum_probs=252.2
Q ss_pred EEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhh-h-hcCcEEE-----eccchhhH
Q 011779 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-W-DRGVQVI-----SAKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~-~~g~~v~-----~~~~~~~~ 145 (477)
||++++..+.+ ||+++++.+++++|.+.|++|++++.................. . ....... ........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888887765 9999999999999999999999999655432211110000000 0 0000000 00111122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccceeeehhh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s~~~ 213 (477)
....++|+||+++...... +. ...++++++|+...... .......+...+.+++.|...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~-------~~--~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL-------RL--RGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc-------cC--CCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 2346899999998655443 11 23578888997542211 112334456778888888877
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
.+.+.+ .++.+..++.++|||+|...+...... . +.+.....++++|+++|++.+.||++.+++++.
T Consensus 152 ~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 KRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred HHHHHH----HhCcCHHHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 777665 455567789999999998877554321 1 334445567889999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~ 371 (477)
.+.+ ..++++|+++|.+... .....+..++.++.++|+++|+. +++..+|+.||++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 9876 4567999999987432 23333333677888999999987 889999999999999999 8999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 451 (477)
|++++|||++|+||| +++.|+..|++ +.+|+++++.| +++++++|.++++|++.+.++++++++.+ +.
T Consensus 286 ~~~~~Ea~a~G~pvI-------~~~~~~~~e~~--~~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~ 353 (365)
T cd03809 286 GLPVLEAMACGTPVI-------ASNISSLPEVA--GDAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KR 353 (365)
T ss_pred CCCHHHHhcCCCcEE-------ecCCCCcccee--cCceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999 99999999998 45789999888 99999999999999999999999999655 67
Q ss_pred cCHHHHHHHHH
Q 011779 452 FQEHHMAERIA 462 (477)
Q Consensus 452 fs~~~~~~~~~ 462 (477)
|+|+++++++.
T Consensus 354 ~sw~~~~~~~~ 364 (365)
T cd03809 354 FSWEKTARRTL 364 (365)
T ss_pred CCHHHHHHHHh
Confidence 99999999875
No 56
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=6.3e-35 Score=285.85 Aligned_cols=344 Identities=21% Similarity=0.221 Sum_probs=258.0
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-----------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------- 142 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----------- 142 (477)
||+++++.+++ ||++.++..++++|.++||+|++++............. .......++++......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 58999998776 88899999999999999999999996544322110000 00011223443222110
Q ss_pred -----------hhHH-HhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeeccccc----------------ch
Q 011779 143 -----------ETIN-TALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------------FK 193 (477)
Q Consensus 143 -----------~~~~-~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------------~~ 193 (477)
.... +..+||+||++++... ........... ..++++++|+..... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLK---GAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhc---CCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 0111 3678999999983322 22222222211 257888888753221 11
Q ss_pred hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE
Q 011779 194 LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (477)
......+..++.+++.+....+.+. ..+.+..++.++|||++...+.+.... .. +.+.....++++|
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 1122345677888888888777665 345677899999999998877554321 11 3445556788999
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHH
Q 011779 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 351 (477)
Q Consensus 274 l~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~ 351 (477)
+++|++.+.||++.+++++.++.+ . ++++|+++|+| +..+.+++.+...++ ++|.++|+. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~-----~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDG-----PEKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCc-----ccHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998865 3 68999999998 566777777766666 589999975 7899
Q ss_pred HHHHhcCEEEEcCCCCCCcc-----cHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECF-----GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~-----g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
++|+.||++++||. .|++ |++++|||++|+||| +++.++..+++.++.+|++++++| +++++++
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~ 358 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVL-------ASVDGESAELVEEAGAGLVVPPGD--PEALAAA 358 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEE-------EecCCCchhhhccCCcceEeCCCC--HHHHHHH
Confidence 99999999999999 6765 788999999999999 999999999998888999999988 9999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.+++.|++.++++++++++.+.++|||+.++++|
T Consensus 359 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 359 ILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999999999999999999899999999886
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=6.2e-35 Score=283.99 Aligned_cols=350 Identities=26% Similarity=0.343 Sum_probs=268.1
Q ss_pred EEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh------hhhhhcCcEE--------Eec
Q 011779 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------HKMWDRGVQV--------ISA 139 (477)
Q Consensus 77 Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------~~~~~~g~~v--------~~~ 139 (477)
||++++.+++ ||++.++..++++|.+.||+|++++............... .......... ...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5788888776 8888999999999999999999999654433221110000 0000000000 001
Q ss_pred cchhhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------hhhHhhcccccccceeeeh
Q 011779 140 KGQETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------KLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------~~~~~~~~~~~~~~~~~s~ 211 (477)
.......+ ..+||+||++.......+........ ..++++++|+...... .......+..++.+++.+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 11234445 78999999997555444443333221 1577888887654332 2223445678888898888
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
...+.+.+. +.+..++.+++||+|...+.+.... .. .+++...++++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKAL-----GIDPEKVTVIPNGVDTERFSPADRA-------EA--RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHHh-----cCCCCceEEcCCCcCcccCCCcchH-------HH--HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 888776642 2567889999999999877654321 11 344555678999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+..+.+ ++++++++++|.+ +..+.+++.+++.++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 999876 5678999999998 5677788888888988999999986 679999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
++|++++|||++|+||| +++.|+..+++.++.+|++++++| +++++++|.+++++++. ++++++++.+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~ 358 (377)
T cd03798 290 GFGLVLLEAMACGLPVV-------ATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVA 358 (377)
T ss_pred cCChHHHHHHhcCCCEE-------EecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHH
Confidence 99999999999999999 999999999999999999999988 99999999999999887 78889999999
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|+|+.+++++.++|+++
T Consensus 359 ~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 359 ERFSWENVAERLLELYREV 377 (377)
T ss_pred HHhhHHHHHHHHHHHHhhC
Confidence 9999999999999998763
No 58
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=2.3e-34 Score=285.46 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=214.3
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------chhhH---hhcccccccceeeehhhHH
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDY---VKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~ 215 (477)
..++|++|++.+....+. ++....+ .+.+.++|..+... +...+ ......++.+++.|....+
T Consensus 209 ~~~~di~i~dr~~~~~~~--~~~~~~~---~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA--VLENKGP---AKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchH--HHhcCCC---ceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 458999999875543322 1222111 46667788643111 11111 2334567888888888888
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+.+.+.. ++...+++.+||||++...+.+.. ..++.+|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 77765432 334467899999998755432210 13457899999999999999999999998
Q ss_pred HHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
.+ +.|+++|+|+|+| +..+.++++++++++.++|.|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 76 6799999999999 6788999999999999999999975 89999999999999998 99999999
Q ss_pred HHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCC--CC----HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGK--EG----ITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d--~~----~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
+||||||+||| +++.+ |.+|+|.+|.+|+++++++ .| ++++|++|.++++ ++.+++|++++++.+
T Consensus 410 lEAma~G~PVI-------~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 410 MEAVGSGLGMI-------GFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA 481 (500)
T ss_pred HHHHHhCCCEE-------EecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 99999999999 99986 8999999999999998542 12 7889999999994 567999999999976
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 011779 449 KEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 449 ~~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|||+.++++|.++++++
T Consensus 482 -~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 482 -EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred -HhcCHHHHHHHHHHHHhhC
Confidence 6799999999999998763
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=1.6e-33 Score=276.15 Aligned_cols=341 Identities=19% Similarity=0.164 Sum_probs=248.6
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh------------------------------hh-
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY------------------------------SL- 125 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------------------------------~~- 125 (477)
+++++..++.+-+|.++.+-.+.|.+.+.+|+++............. .+
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 56778888777778999999999999999999987443321110000 00
Q ss_pred hhhhhhcCcEEE---ec----cch-hh------H-------HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeee
Q 011779 126 EHKMWDRGVQVI---SA----KGQ-ET------I-------NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI 184 (477)
Q Consensus 126 ~~~~~~~g~~v~---~~----~~~-~~------~-------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (477)
.......+.... .. ... +. . ....++|++|++...........+..+.. .++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~--~~~~i~~~ 159 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYL--RKRVISRA 159 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcC--CceEEEEe
Confidence 000000111000 00 000 00 0 01245677777653333322332333221 13578889
Q ss_pred eecccc--c----chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHH
Q 011779 185 HEMRGH--Y----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (477)
Q Consensus 185 h~~~~~--~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (477)
|+.... . +.......+..++.+++.|....+++.+ .++....++.+++||++...+.+..
T Consensus 160 Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~----~~~~~~~ki~vi~~gv~~~~~~~~~---------- 225 (407)
T cd04946 160 HGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK----RYPAYKEKIKVSYLGVSDPGIISKP---------- 225 (407)
T ss_pred ccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH----HCCCccccEEEEECCcccccccCCC----------
Confidence 965321 1 1112233457888999999888887765 5667778999999999987553321
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC--ceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
..++.+.|+++|++.+.||++.+++|+.++.+ +.| +++++++|+| +..+.+++++++.+
T Consensus 226 -------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~-------~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~ 286 (407)
T cd04946 226 -------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK-------ARPSIKIKWTHIGGG-----PLEDTLKELAESKP 286 (407)
T ss_pred -------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-------hCCCceEEEEEEeCc-----hHHHHHHHHHHhcC
Confidence 12567899999999999999999999999976 444 5778889998 67888999998888
Q ss_pred CCCcEEEcccc--CCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceee
Q 011779 337 IQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL 412 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l 412 (477)
..++|.|+|++ +++.++|+. +|++++||. .||+|++++|||++|+||| +++.||.+|++.++.+|++
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVI-------as~vgg~~e~i~~~~~G~l 357 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVI-------ATNVGGTPEIVDNGGNGLL 357 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEE-------eCCCCCcHHHhcCCCcEEE
Confidence 88899999997 578899975 789999999 9999999999999999999 9999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+++++ |+++++++|.++++|++.+++|+++|++.++++|+|+.+.+++.
T Consensus 358 ~~~~~-~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 358 LSKDP-TPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred eCCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 98752 29999999999999999999999999999999999999998875
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.1e-34 Score=277.54 Aligned_cols=334 Identities=13% Similarity=0.118 Sum_probs=234.0
Q ss_pred ccEEEEEeccCCC--CchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhh--------------hhhhh-hhcC--
Q 011779 74 SKLVLLVSHELSL--SGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYS--------------LEHKM-WDRG-- 133 (477)
Q Consensus 74 ~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~--------------~~~~~-~~~g-- 133 (477)
+++|++++.-.-| .|...--.--|-+|++. |++|+++.++-...+....++ +...+ ...|
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 4679999865444 77665555557778877 799999986544332221111 11222 1122
Q ss_pred --cEE--Ee------------ccchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccccchhh
Q 011779 134 --VQV--IS------------AKGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFKLD 195 (477)
Q Consensus 134 --~~v--~~------------~~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~ 195 (477)
.++ ++ .......+..++|||||+++|....+. ......+. .+++..+|+....|....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl----~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF----NHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc----CCeEEEEeCCcHHHHhHh
Confidence 222 22 222245666789999999998776666 33333332 257788888654443211
Q ss_pred H------------hhcccc--cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHH
Q 011779 196 Y------------VKHLPL--VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (477)
Q Consensus 196 ~------------~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (477)
. ..++.. ++.+++.|..+.. + +.. +....||||.+.|.+.... ..+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L----------~~~-vI~nVnGVDte~F~P~~r~--------~~~ 537 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-L----------PKS-VICNVHGVNPKFLKIGEKV--------AEE 537 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-h----------ccc-ceeecccccccccCCcchh--------HHH
Confidence 1 012222 4666666644442 1 112 2222379999998875431 122
Q ss_pred HhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 262 ~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
+++|++.....++|+||+.++||++.|++|++.+.+ +.++++|+|+|+| +.++++++++.++++ +|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDG-----P~reeLe~la~eLgL--~V 603 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNG-----EDAHEVQRAAKRLDL--NL 603 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCC-----ccHHHHHHHHHHcCC--EE
Confidence 456765555568899999999999999999998865 5588999999999 788999999999887 59
Q ss_pred EEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHH
Q 011779 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~ 421 (477)
.|+|..++...+|+.+|+||+||. .|+||++++||||||+||| +++.+|.. ++.++.+|+++ +| .+
T Consensus 604 ~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVV-------ATd~pG~e-~V~~g~nGll~--~D--~E 669 (794)
T PLN02501 604 NFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVV-------CADHPSNE-FFRSFPNCLTY--KT--SE 669 (794)
T ss_pred EecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEE-------EecCCCCc-eEeecCCeEec--CC--HH
Confidence 999999889899999999999999 9999999999999999999 99998854 46677788865 56 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++++|.+++.++..+..+++ ...|||+.+++++++.-
T Consensus 670 afAeAI~~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 670 DFVAKVKEALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 999999999998775544332 23699999999998753
No 61
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.2e-32 Score=261.27 Aligned_cols=383 Identities=28% Similarity=0.310 Sum_probs=286.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHh---------CCcEEEEEecCCCCChhhHHhhhh----------------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG---------VGTKVNWITIQKPSEEDEVIYSLE---------------- 126 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~~~~~~~---------------- 126 (477)
+..+++++.++....||.++...+.+-.+.. .|++|.+++.+......+......
T Consensus 32 ~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~ 111 (495)
T KOG0853|consen 32 KPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDW 111 (495)
T ss_pred ccchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEee
Confidence 3456788999999889999888888888888 999999999765544211111111
Q ss_pred ----------hhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhh-
Q 011779 127 ----------HKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD- 195 (477)
Q Consensus 127 ----------~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~- 195 (477)
......+++++..+....+.-..+.|.|+.....++.++...+.. |...++++|++|.....+.++.
T Consensus 112 lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g 189 (495)
T KOG0853|consen 112 LPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLG 189 (495)
T ss_pred cCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccC
Confidence 111222333333333222222367899999888777777776665 7778899999999776654432
Q ss_pred -----H--------hhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 196 -----Y--------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 196 -----~--------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
+ .......+.+++++..++..+...+. .++..++.+.+.++|.+.+.+... ..+...+...|.
T Consensus 190 ~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~~-~~~~~~~~~~r~ 265 (495)
T KOG0853|consen 190 VLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFV---SLSNSDITSTYPEIDGSWFTYGQY-ESHLELRLPVRL 265 (495)
T ss_pred ccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhh---hcCCCCcceeeccccchhcccccc-ccchhcccccce
Confidence 1 11123556678888888888777644 345555889999999887765211 112233456667
Q ss_pred hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecC-----CCcchHHHHHHHHHHHhcCC
Q 011779 263 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 263 ~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g-----~~~~~~~~~~l~~~~~~~~l 337 (477)
+.+....+..+..+.++.+.||++.+++++..+...+++. ..++.+++++|+. ..++..+.++++++++++++
T Consensus 266 ~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l 343 (495)
T KOG0853|consen 266 YRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL 343 (495)
T ss_pred eeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc
Confidence 7788777889999999999999999999999998866543 4577899999943 34455689999999999988
Q ss_pred -CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 338 -QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 338 -~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+.|.|+....+...+...+|..+.-+....|+||++++|||+||+||| |++.||..|+|.++.+|++++++
T Consensus 344 ~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvv-------At~~GGP~EiV~~~~tG~l~dp~ 416 (495)
T KOG0853|consen 344 LGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVV-------ATNNGGPAEIVVHGVTGLLIDPG 416 (495)
T ss_pred cCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEE-------EecCCCceEEEEcCCcceeeCCc
Confidence 5788888887777777777776444443337999999999999999999 99999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++.+..+++++.++..||+.+.+|+++++++++++|+|..+.+++.++..+..
T Consensus 417 ~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 417 QEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 42223799999999999999999999999999999999999999998887653
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=1.2e-31 Score=253.07 Aligned_cols=295 Identities=17% Similarity=0.156 Sum_probs=207.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHHHHhh
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLK 170 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~ 170 (477)
++-.-+.+.|...|++|+++-...-. +..+.. +++..+.|+.....+ ..
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~~----~~ 62 (331)
T PHA01630 14 RQKKLLEEHLKMLGHKVTVFEKPTLT--------------------------KYQLPP-GYPIYIYYTIFNSML----FW 62 (331)
T ss_pred HHHHHHHHHHHHhCCeeEEEeccchh--------------------------hhhcCC-CCceeeehhhhhHHH----HH
Confidence 55666778888889999887522110 011111 344444554333222 22
Q ss_pred hCCCccccceeeeeeecccccchhhHhhc--ccccccceeeehhhHHHHHHHhHhhhccC-CCCeEEEecCCchhhhhhh
Q 011779 171 EDVPRVLPNVLWWIHEMRGHYFKLDYVKH--LPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVA 247 (477)
Q Consensus 171 ~~~~~~~~~~i~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~ 247 (477)
.+++..+.++++.+|... .....+..+ ...++.+++.|....+.+.+ .+++ .+++.+||||+|.+.|.+.
T Consensus 63 ~~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 63 KGIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred hhccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCCC
Confidence 233445567888888742 222223332 46789999999998887754 2443 4689999999999887643
Q ss_pred hhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHH
Q 011779 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 327 (477)
... ..++++++++|++.++||++.+++|++++.+ +.++++++++|++. ....
T Consensus 136 ~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~~ 187 (331)
T PHA01630 136 PKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDPR 187 (331)
T ss_pred ccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cchh
Confidence 211 1355777788899999999999999999876 55899999999762 2222
Q ss_pred HHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 328 LRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
+ .++.+ +......+++..+|+.||++|+||. .|+||++++||||||+||| +|+.||..|++.++
T Consensus 188 l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVI-------as~~gg~~E~i~~~ 251 (331)
T PHA01630 188 L------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVV-------VTEKGAWSEWVLSN 251 (331)
T ss_pred h------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEE-------EeCCCCchhhccCC
Confidence 1 12222 1111223889999999999999999 8999999999999999999 99999999999999
Q ss_pred CceeeecCC-----------------CCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 408 TTGLLHPVG-----------------KEGITPLAKNIVKLATHV--ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 408 ~~G~l~~~~-----------------d~~~~~la~~i~~ll~~~--~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
.+|++++.+ +.|.+++++++.+++.|+ +.++++..++.+.+.++|||++++++++++|++
T Consensus 252 ~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 252 LDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred CceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 888887643 112788999999988863 445555555555667899999999999999974
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=9.8e-32 Score=260.06 Aligned_cols=313 Identities=19% Similarity=0.195 Sum_probs=212.1
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH-----hhhhhhh--hhcCc-EEEe-ccchhhH
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-----YSLEHKM--WDRGV-QVIS-AKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~--~~~g~-~v~~-~~~~~~~ 145 (477)
||+++++.+. .||+|+.+.++++.|.+.+ |..+............ ....... ..... ...+ .......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDAD--IFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCCC--EEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5888888776 4999999999999987532 3222222111110000 0000000 00000 0000 0001122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc-------------------------hhhHhhcc
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------------------------KLDYVKHL 200 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------------~~~~~~~~ 200 (477)
....++|+|++++......+. .. ...+.++++|......+ .....+.+
T Consensus 79 ~~~~~~D~v~~~~~~~~~~~~--~~-----~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 79 FDLSGYDLVISSSHAVAKGVI--TR-----PDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred ccccCCCEEEEcCcHHhcccc--CC-----CCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 334689999998753333211 11 11345566665211000 00112334
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
+.++.+++.|....+.+.+. ++ .+..+|+||+|.+.+.+.. .....++++||+.
T Consensus 152 ~~~d~ii~~S~~~~~~~~~~----~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~~ 205 (351)
T cd03804 152 ARVDYFIANSRFVARRIKKY----YG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRLV 205 (351)
T ss_pred cCCCEEEECCHHHHHHHHHH----hC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcCc
Confidence 77888999999888887653 33 3468999999988775432 2334688999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcC
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aD 358 (477)
+.||++.+++|++++ + ++|+|+|+| +..+.+++ +..++|+|+|++ +++.++|+.||
T Consensus 206 ~~K~~~~li~a~~~~-----------~-~~l~ivG~g-----~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 206 PYKRIDLAIEAFNKL-----------G-KRLVVIGDG-----PELDRLRA-----KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred cccChHHHHHHHHHC-----------C-CcEEEEECC-----hhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 999999999999865 5 899999999 55566655 445899999997 55999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
++++||. |+||++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|..+++|++
T Consensus 264 ~~v~ps~---e~~g~~~~Eama~G~Pvi-------~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~--- 328 (351)
T cd03804 264 AFLFPAE---EDFGIVPVEAMASGTPVI-------AYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED--- 328 (351)
T ss_pred EEEECCc---CCCCchHHHHHHcCCCEE-------EeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---
Confidence 9999984 999999999999999999 999999999999999999999988 9999999999999884
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
.+++++++.+ ++|+|+++.+++
T Consensus 329 ~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 329 FDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred cCHHHHHHHH-HhcCHHHHHHHh
Confidence 2333444444 459999988765
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=1.1e-31 Score=261.93 Aligned_cols=263 Identities=20% Similarity=0.286 Sum_probs=211.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--------h---hhHhhcccccccceeeehhhHHHH
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------K---LDYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------~---~~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
.++|+++++.+....+.. .....+ .+.+.++|+.+.... . ......+..++.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~--~~~~~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQAL--LNMKKA---AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhH--HhccCC---ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 689999999866555411 221111 235667776432211 1 112233467778888888777776
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~ 297 (477)
.+ .++.. .++.+||||++...+.+... ...++..++++||+.+.||++.+++++.++.+
T Consensus 173 ~~----~~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 55 33322 34899999999876654210 01456788999999999999999999999977
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
+.|+++|+|+|.| +....+++.+++++++++|.|.|+.+++.++|+.||++|+||. .||||++++|
T Consensus 232 -------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYG-----DEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeC-----chHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 6799999999999 5677788888999999999999998999999999999999999 9999999999
Q ss_pred HHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 378 AMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 378 Ama~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
||++|+||| +++.+ |..+++.++.+|++++++| +++++++|..+++|++.+++|++++++.+ ++|||++
T Consensus 298 Ama~G~PvI-------~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~ 367 (372)
T cd04949 298 ALSHGLPVI-------SYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEEN 367 (372)
T ss_pred HHhCCCCEE-------EecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHH
Confidence 999999999 99987 7899999999999999998 99999999999999999999999999985 7899999
Q ss_pred HHHHH
Q 011779 457 MAERI 461 (477)
Q Consensus 457 ~~~~~ 461 (477)
++++|
T Consensus 368 ~~~~w 372 (372)
T cd04949 368 VWEKW 372 (372)
T ss_pred HHhcC
Confidence 98864
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.98 E-value=6.4e-31 Score=254.96 Aligned_cols=307 Identities=12% Similarity=0.070 Sum_probs=211.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCc-EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc---ch-------h-
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQ-------E- 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---~~-------~- 143 (477)
++.+++- +-.|++.++..++..|.++|+ +|++++...+.. ........|++++..+ .. +
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~-------~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~ 76 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEP-------IPALLNHPSIHIHLMVQPRLLQRLPRVLYA 76 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC-------CHHHhcCCcEEEEECCCcccccccccchHH
Confidence 4444442 346778899999999998875 899999544321 1222334456665543 10 0
Q ss_pred -----h------------HHHhcCCcEEEEcCcchhh--HHHHHhhhCCCccccceeeeeeeccccc-------------
Q 011779 144 -----T------------INTALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHY------------- 191 (477)
Q Consensus 144 -----~------------~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------- 191 (477)
. ..+..+||+||+|++.... .......... ..+++.++|+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~---~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 153 (371)
T PLN02275 77 LALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLR---RAKFVIDWHNFGYTLLALSLGRSHPLVR 153 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHh---CCCEEEEcCCccHHHHhcccCCCCHHHH
Confidence 0 1234799999998754322 1222222111 146777888752110
Q ss_pred -chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCC
Q 011779 192 -FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 270 (477)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 270 (477)
........++.++.+++.|....+.+.+ .+|++ +.+||||. .+.|.+.... . .+. +++.
T Consensus 154 ~~~~~e~~~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-------~----~~~-~~~~ 213 (371)
T PLN02275 154 LYRWYERHYGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-------I----RLR-PNRP 213 (371)
T ss_pred HHHHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-------h----ccc-CCCc
Confidence 0111223456788899988888877654 34543 88999995 4555443211 0 111 1344
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc----------cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~----------~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
.+++++||+.++||++.+++|+..+..++...+ ...|+++|+|+|+| +.+++++++++++++++
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRH- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCc-
Confidence 677899999999999999999998754322100 03588999999999 67899999999999975
Q ss_pred EEEcc-c--cCCHHHHHHhcCEEEEcCC-CCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 341 VHFVN-K--TLTVAPYLAAIDVLVQNSQ-AWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 341 v~~~g-~--~~~l~~~~~~aDv~v~pS~-~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
+.|.+ + .+++..+|+.||++|+|+. .+.|++|++++||||||+||| +++.||.+|++.++.+|++++
T Consensus 288 v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVV-------a~~~gg~~eiv~~g~~G~lv~-- 358 (371)
T PLN02275 288 VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC-------AVSYSCIGELVKDGKNGLLFS-- 358 (371)
T ss_pred eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEE-------EecCCChHHHccCCCCeEEEC--
Confidence 77765 4 3899999999999998642 125899999999999999999 999999999999999999997
Q ss_pred CCCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLA 431 (477)
Q Consensus 417 d~~~~~la~~i~~ll 431 (477)
| +++++++|.+++
T Consensus 359 ~--~~~la~~i~~l~ 371 (371)
T PLN02275 359 S--SSELADQLLELL 371 (371)
T ss_pred C--HHHHHHHHHHhC
Confidence 5 899999998874
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.98 E-value=2.6e-30 Score=240.73 Aligned_cols=307 Identities=18% Similarity=0.167 Sum_probs=210.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
||-++++..+ +....+..+++..|++.|.-|++.+....-. . .+.-+-.+++
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~--------------- 52 (335)
T PHA01633 1 MKTAILTMNY--SSISNVSEDIAEVLRENGEIVTITKNPFYIP----------K-AEKLIVFIPF--------------- 52 (335)
T ss_pred CceEEEEech--hhhhhHHHHHHHHHHhCCcEEEEecCCcccC----------c-cceEEEEeec---------------
Confidence 3445555444 3445788899999999998888887432110 0 0000111111
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEE
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (477)
|-+....++..... +. ...+++.++|+... ...+.+.+.+-+.++++|..+.+.+.+ .|++.. + +
T Consensus 53 --~~~~~~~~~~~~~~--~~-~~~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~-i-~ 117 (335)
T PHA01633 53 --HPPSLNPYLYAYYQ--FK-GKKYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQE-----VGLQVD-L-P 117 (335)
T ss_pred --CCcccchHHhhhhh--hc-CCCceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc-e-e
Confidence 11222222221111 11 11457778887643 234455555566788999888887663 355544 3 5
Q ss_pred EecCCchhhhhhhhhhHHHHHHHHHHHHhhCCC-CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC----ce
Q 011779 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SV 309 (477)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~----~~ 309 (477)
|+||+|.+.|.+.... ..++|++++.. ++.++|+++||+.++||++.+++|++++.+ +.| ++
T Consensus 118 I~~GVD~~~f~p~~~~------~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~-------~~p~~~~~i 184 (335)
T PHA01633 118 VFHGINFKIVENAEKL------VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNT-------KYPDIAKKI 184 (335)
T ss_pred eeCCCChhhcCccchh------hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHH-------hCCCccccE
Confidence 7899999988764321 24566666643 467899999999999999999999999876 344 46
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc---c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
+++++|.+ ..++++++++|+|+| + .+++.++|++||++|+||. .|+||++++|||+||+|
T Consensus 185 ~l~ivG~~-------------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~P 249 (335)
T PHA01633 185 HFFVISHK-------------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTP 249 (335)
T ss_pred EEEEEcHH-------------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCC
Confidence 78888742 124567788999995 3 3679999999999999999 99999999999999999
Q ss_pred EEeeccccccccCCCceEEee----------------c--CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 385 VLLQKCLYQGTAAGGTTEIVV----------------N--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~~e~v~----------------~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
|| +++.||++|++. + ...|++++..| +++++++|..++...+ +..++.++++
T Consensus 250 VV-------as~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~ 319 (335)
T PHA01633 250 VI-------HQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKE 319 (335)
T ss_pred EE-------EccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHH
Confidence 99 888888888643 1 22466888777 9999999999866322 3333667777
Q ss_pred HHHHhcCHHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIAV 463 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~~ 463 (477)
.+ +.|+|+++.++|++
T Consensus 320 ~a-~~f~~~~~~~~~~~ 335 (335)
T PHA01633 320 LA-KKYDIRNLYTRFLE 335 (335)
T ss_pred HH-HhcCHHHHHHHhhC
Confidence 66 66999999999863
No 67
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-28 Score=236.68 Aligned_cols=371 Identities=19% Similarity=0.135 Sum_probs=265.1
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhh------------------h-h
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM------------------W-D 131 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~------------------~-~ 131 (477)
|||++++.+..| ||..-.+..|.++|++.|++|.|+.+..+.........+.... . .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 689999987655 8988999999999999999999999777632221111000000 0 0
Q ss_pred cCcEEEeccch------------------h---------hHH-Hh---cCCcEEEEcCcchhhHHHHHhhhCCCccccce
Q 011779 132 RGVQVISAKGQ------------------E---------TIN-TA---LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (477)
Q Consensus 132 ~g~~v~~~~~~------------------~---------~~~-~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (477)
.+++++-+... + ... .. ..|||||+|+...+................+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 01222111000 0 001 11 36999999986665543333332111223688
Q ss_pred eeeeeeccccc--c--------------h----------hhHhhcccccccceeeehhhHHHHHHH-----hHhhhccCC
Q 011779 181 LWWIHEMRGHY--F--------------K----------LDYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKM 229 (477)
Q Consensus 181 i~~~h~~~~~~--~--------------~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~ 229 (477)
++++|+..... . . ...+..+..++.+.++|.+.+..+... +...+....
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 99999853211 0 0 111223457777888888888766511 001112233
Q ss_pred CCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 230 PDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
.++.-|.||+|.+.+.|..++. .+...+..+++++|++. +.+++.++||+..+||+|.+++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 6789999999999988765531 25567789999999983 5699999999999999999999999998
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+ ..+++++.|.|. ..+++.+..+++.+.. ++. ..|+.+. ...+|+.+|++++||+ +|++|++
T Consensus 321 ~---------~~~~~vilG~gd---~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ 384 (487)
T COG0297 321 E---------QGWQLVLLGTGD---PELEEALRALASRHPG--RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLT 384 (487)
T ss_pred H---------hCceEEEEecCc---HHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHH
Confidence 7 449999999983 2688889998887753 443 3455544 5566999999999999 9999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCCceEEeec--------CCceeeecCCCCCHHHHHHHHHHHHh---CHHH-HHHHHH
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--------GTTGLLHPVGKEGITPLAKNIVKLAT---HVER-RLTMGK 442 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--------~~~G~l~~~~d~~~~~la~~i~~ll~---~~~~-~~~~~~ 442 (477)
-++||.+|+++| +..+||.+|.|.+ ..+|+++.+.+ +++++.+|.+.+. +++. .+.+..
T Consensus 385 ql~amryGtvpI-------v~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~ 455 (487)
T COG0297 385 QLYAMRYGTLPI-------VRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALVLYRAPPLLWRKVQP 455 (487)
T ss_pred HHHHHHcCCcce-------EcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999999999 9999999998875 47999999987 9999999998876 4444 666666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
++.. ..|+|+..+.+|.++|+.+++...
T Consensus 456 ~~m~---~d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 456 NAMG---ADFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred hhcc---cccCchhHHHHHHHHHHHHhcccc
Confidence 6655 679999999999999999987654
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=238.50 Aligned_cols=323 Identities=15% Similarity=0.090 Sum_probs=223.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
||||+++.... ||.+++..+|+++|.++||+|++++...... .......|++++....
T Consensus 1 ~~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~l 70 (357)
T PRK00726 1 MKKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGME--------ARLVPKAGIEFHFIPSGGLRRKGSLANL 70 (357)
T ss_pred CcEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchh--------hhccccCCCcEEEEeccCcCCCChHHHH
Confidence 38898888555 6888889999999999999999999654211 1111223554433221
Q ss_pred ------------hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 142 ------------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 142 ------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
.+++.+..+||+||+|+.........+.+. . ..|++++.|..... ...+..+...+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~~~---~~~r~~~~~~d~ii~~ 143 (357)
T PRK00726 71 KAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARL-L---GIPLVIHEQNAVPG---LANKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHH-c---CCCEEEEcCCCCcc---HHHHHHHHHhchheEC
Confidence 023445678999999985433322211111 1 14555554432111 1111223456666655
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
+... +. . .+..++++++||++.+.+.+.. .+.+++++++.++|+++|+....|++..++
T Consensus 144 ~~~~---~~-----~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---FP-----E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---hh-----c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 5421 11 1 4678999999999987654311 123466667778888999888888875555
Q ss_pred -HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCC
Q 011779 290 -HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 290 -~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~ 368 (477)
+|+.++.+ . + ..++++|+| +. +.+.+..+ +++. |.|.|+++++.++|+.||+++.+|.
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g-----~~-~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g--- 261 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKG-----DL-EEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG--- 261 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCC-----cH-HHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC---
Confidence 88887743 2 3 567788998 33 44555555 7663 9999999999999999999997653
Q ss_pred CcccHHHHHHHHcCCCEEeeccccccccCCC--------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 369 E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+.+++|||++|+||| ++..++ ..+.+.+..+|+++++.|.++++++++|.++++|++.+++|
T Consensus 262 ---~~~~~Ea~~~g~Pvv-------~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 331 (357)
T PRK00726 262 ---ASTVAELAAAGLPAI-------LVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAM 331 (357)
T ss_pred ---HHHHHHHHHhCCCEE-------EecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 689999999999999 766543 23556677799999887656899999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++.+ +.++.+.+++.+.++.+
T Consensus 332 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 332 AEAARALG-KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHhcC-CcCHHHHHHHHHHHHhh
Confidence 99999876 66899999988887654
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.97 E-value=1.3e-27 Score=236.65 Aligned_cols=332 Identities=15% Similarity=0.127 Sum_probs=222.6
Q ss_pred chhhHHHHHHHHHHhCCcEEEE--EecCCCCChhhHHhhhhhhhhhcCcEE--Eeccc---hhhHHHhcCCcEEEEcCcc
Q 011779 88 GGPLLLMELAFLLRGVGTKVNW--ITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAKG---QETINTALKADLIVLNTAV 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~~~~~~~~~~~~~~~g~~v--~~~~~---~~~~~~~~~~DiV~~~~~~ 160 (477)
|-...+..|++.|.++++++.| .+...... .........++.+ ++... .+.+.+..+||+||++...
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~------~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTPTGS------ERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCccHH------HHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecc
Confidence 4448899999999998766444 22222111 1111111223433 33332 3466678899999987432
Q ss_pred hhh-HHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeE
Q 011779 161 AGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTY 233 (477)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~ 233 (477)
... .+..+...+ .+++...|...... +.......++.++.+++.|....+.+. .+|++.+ +.
T Consensus 135 ~~~~~l~~~~~~~-----ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~ 203 (425)
T PRK05749 135 LWPNLIAELKRRG-----IPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VT 203 (425)
T ss_pred hhHHHHHHHHHCC-----CCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cE
Confidence 211 222222222 33443333321111 122233455678888988888887765 3466666 88
Q ss_pred EEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE
Q 011779 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313 (477)
Q Consensus 234 vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i 313 (477)
+++|+ +.+.+.+... ......+|++++ +++.+++++|+. .|+.+.+++|++++.+ ++|+++|+|
T Consensus 204 vi~n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~-------~~~~~~lii 267 (425)
T PRK05749 204 VTGNL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLK-------QFPNLLLIL 267 (425)
T ss_pred ecccc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHH-------hCCCcEEEE
Confidence 88885 3332211111 112456777777 455677777763 6889999999999876 568999999
Q ss_pred EecCCCcchHHH-HHHHHHHHhcCCCC-------------cEEEccccCCHHHHHHhcCEEEE-cCCCCCCcccHHHHHH
Q 011779 314 IGSDMNAQTKFE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEA 378 (477)
Q Consensus 314 vG~g~~~~~~~~-~~l~~~~~~~~l~~-------------~v~~~g~~~~l~~~~~~aDv~v~-pS~~~~E~~g~~~lEA 378 (477)
+|+| +.+ ++++++++++|+.. .|.+.+...++..+|+.||++++ +|. .|++|.+++||
T Consensus 268 vG~g-----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEA 340 (425)
T PRK05749 268 VPRH-----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEP 340 (425)
T ss_pred cCCC-----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHH
Confidence 9998 554 78999999988742 34444445689999999999655 666 79999999999
Q ss_pred HHcCCCEEeeccccccccC-CCceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 379 MAFQLPVLLQKCLYQGTAA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~~-gg~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
|++|+||| +++. ++..|+++.. ++|.+++++| +++++++|.++++|++.+++|++++++.+.++ ..
T Consensus 341 ma~G~PVI-------~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~ 408 (425)
T PRK05749 341 AAFGVPVI-------SGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QG 408 (425)
T ss_pred HHhCCCEE-------ECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---cc
Confidence 99999999 7654 4556655442 4688888888 99999999999999999999999999998664 46
Q ss_pred HHHHHHHHHHHHHhh
Q 011779 457 MAERIAVVLKEVLKK 471 (477)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (477)
.++++.+++.+.++.
T Consensus 409 ~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 409 ALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHHHHhccc
Confidence 778888888776654
No 70
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=1.5e-27 Score=233.94 Aligned_cols=289 Identities=17% Similarity=0.135 Sum_probs=205.7
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++...+. .++.+.+|...+.. +.....+.+-.+|.+...+...+..+....
T Consensus 126 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLL-PAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhHH-HHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3458999998655443 3344444443 46778888643221 222333344455555555555555555444
Q ss_pred Hhhhcc-----------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+.+|. ...++.++|||||.+.|.+...........+.+|++++ ++++|+++||+.+.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccccccccCHHHHHH
Confidence 433332 33468899999999999775433222223345777773 6788999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCc----eEEEEEecCCCcchHHHHHHHHHHHhc--------CCCC--cEEEcc-c--cCCHHHH
Q 011779 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVN-K--TLTVAPY 353 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g-~--~~~l~~~ 353 (477)
|++++.+ ++|+ +.|+++|.....+.+...++++.++++ +..+ .+++++ . .+++..+
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9999876 4454 568877632212224455555555543 1111 144544 3 3889999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 429 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 429 (477)
|++||++|+||. .||||++++||||||+| || +|+.+|..+.+. +|++++|.| +++++++|.+
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vV-------lS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~ 418 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLI-------LSEFAGAAQELN---GALLVNPYD--IDGMADAIAR 418 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEE-------EeCCCCChHHhC---CcEEECCCC--HHHHHHHHHH
Confidence 999999999999 99999999999999999 99 999888887773 799999999 9999999999
Q ss_pred HHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 430 LAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 430 ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++ +++.++++.+++++++. .||+..+++++++-+
T Consensus 419 aL~~~~~er~~r~~~~~~~v~-~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 419 ALTMPLEEREERHRAMMDKLR-KNDVQRWREDFLSDL 454 (456)
T ss_pred HHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHh
Confidence 998 77889999999999985 599999999987644
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=6e-28 Score=238.93 Aligned_cols=288 Identities=16% Similarity=0.114 Sum_probs=200.6
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
...|+|++|........ ..+....+. .++++.+|...+.. ......+.+-.+|.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~llp-~~lr~~~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP-QMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHHH-HHHHhhCCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 36799999987554433 334443332 47888889653322 111222233334444444444444433333
Q ss_pred Hhhhcc------------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
....+. ...++.++|||||.+.|.+...... .++.+++..+..+++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPE---VQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCch---hHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222222 2246899999999999876543211 1233344445556888999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhcCCC------CcEEE-ccc--cCCHHH
Q 011779 290 HSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQKKIQ------DRVHF-VNK--TLTVAP 352 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~~l~------~~v~~-~g~--~~~l~~ 352 (477)
+|++.+.+ ++|+ ++|+++|.+...+ ..+.+++++++.+.+.. ..|++ .|. .+++..
T Consensus 284 ~A~~~ll~-------~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~ 356 (460)
T cd03788 284 LAFERLLE-------RYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAA 356 (460)
T ss_pred HHHHHHHH-------hChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHH
Confidence 99999876 4454 6788887643211 23445555555543321 23544 454 489999
Q ss_pred HHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
+|+.||++|+||. .||||++++|||+||+| || +++.+|..+. +.+|++++++| +++++++|.
T Consensus 357 ~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV-------~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~ 422 (460)
T cd03788 357 LYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLI-------LSEFAGAAEE---LSGALLVNPYD--IDEVADAIH 422 (460)
T ss_pred HHHhccEEEeCcc--ccccCcccceeEEEecCCCceEE-------Eeccccchhh---cCCCEEECCCC--HHHHHHHHH
Confidence 9999999999999 99999999999999999 88 8888888776 46899999999 999999999
Q ss_pred HHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 429 KLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 429 ~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
++++ +++.++.+++++++.+ +.||++.++++++.-
T Consensus 423 ~~l~~~~~e~~~~~~~~~~~v-~~~~~~~w~~~~l~~ 458 (460)
T cd03788 423 RALTMPLEERRERHRKLREYV-RTHDVQAWANSFLDD 458 (460)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHh
Confidence 9998 5578888899999888 569999999988753
No 72
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.96 E-value=1.6e-27 Score=230.48 Aligned_cols=313 Identities=15% Similarity=0.121 Sum_probs=212.2
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--c--------------
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K-------------- 140 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--~-------------- 140 (477)
|++.+... ||..+++..++++|.++||+|++++....... ......|+++..+ .
T Consensus 2 ~~~~~~~~--gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (350)
T cd03785 2 ILIAGGGT--GGHIFPALALAEELRERGAEVLFLGTKRGLEA--------RLVPKAGIPLHTIPVGGLRRKGSLKKLKAP 71 (350)
T ss_pred EEEEecCc--hhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--------hcccccCCceEEEEecCcCCCChHHHHHHH
Confidence 55555433 78889899999999999999999996543211 1111223433221 1
Q ss_pred --------chhhHHHhcCCcEEEEcCcchhhHHHH-HhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeeh
Q 011779 141 --------GQETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~ 211 (477)
....+.+..+||+||+|+......... +...+ .+++.+.|.... ....+..+...+.+++.+.
T Consensus 72 ~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~-----~p~v~~~~~~~~---~~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 72 FKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLG-----IPLVIHEQNAVP---GLANRLLARFADRVALSFP 143 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhC-----CCEEEEcCCCCc---cHHHHHHHHhhCEEEEcch
Confidence 012344667999999997544332221 22222 244443333211 1111222344677777666
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH-HHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLH 290 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~-ll~ 290 (477)
...++ ++..++.+++||+|.+.+.+.+ . ++++++++++++++++|+....|+.+. +++
T Consensus 144 ~~~~~----------~~~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~ 202 (350)
T cd03785 144 ETAKY----------FPKDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPE 202 (350)
T ss_pred hhhhc----------CCCCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHH
Confidence 55443 3567899999999987664321 1 677888888888888887777777654 558
Q ss_pred HHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCC
Q 011779 291 SFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E 369 (477)
++..+.+ +++++ +++|+| ..+++++.++++ .++|+|.|+++++.++|+.||++|.+|.
T Consensus 203 a~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg---- 261 (350)
T cd03785 203 ALAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG---- 261 (350)
T ss_pred HHHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC----
Confidence 8877742 45654 477876 346677777766 4789999999999999999999997652
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCC--------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
+++++|||++|+||| +++.++ ..+.+.+..+|+++++++.|+++++++|.++++|++.+++|+
T Consensus 262 --~~t~~Eam~~G~Pvv-------~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 332 (350)
T cd03785 262 --ASTVAELAALGLPAI-------LIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMA 332 (350)
T ss_pred --HhHHHHHHHhCCCEE-------EeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 689999999999999 665543 245666677999999872229999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHH
Q 011779 442 KRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~ 459 (477)
+++++++ +.+..+++++
T Consensus 333 ~~~~~~~-~~~~~~~i~~ 349 (350)
T cd03785 333 EAARSLA-RPDAAERIAD 349 (350)
T ss_pred HHHHhcC-CCCHHHHHHh
Confidence 9999877 4566666553
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=1.2e-26 Score=226.68 Aligned_cols=338 Identities=11% Similarity=0.073 Sum_probs=225.3
Q ss_pred CccEEEEEeccCCCC-chhhHHHHHHHHHHhCCcEEEEEecCCCCCh---hhH-H--h-------hhhhhhhhcCc-EEE
Q 011779 73 KSKLVLLVSHELSLS-GGPLLLMELAFLLRGVGTKVNWITIQKPSEE---DEV-I--Y-------SLEHKMWDRGV-QVI 137 (477)
Q Consensus 73 ~~~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~---~~~-~--~-------~~~~~~~~~g~-~v~ 137 (477)
++|||++++..+ | |....+..++++|.++|++|++++....... ... . | +....+...+. ...
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 567999999777 5 4447789999999999998777764332111 000 0 0 00000001000 000
Q ss_pred e-----------ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccc
Q 011779 138 S-----------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (477)
Q Consensus 138 ~-----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (477)
. ......+.+..+||+||++.+..... .+.+... ...|++..+++... .....++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~--~~ip~~~~~td~~~-----~~~~~~~~ad~i 151 (380)
T PRK13609 81 DKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP--ELKKQTG--ISIPTYNVLTDFCL-----HKIWVHREVDRY 151 (380)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH--HHHHhcC--CCCCeEEEeCCCCC-----CcccccCCCCEE
Confidence 0 12234556678999999987654432 2222211 11344433333211 111234578888
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCC-eEEEEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~il~vGrl~~~Kg~ 285 (477)
++.+....+.+. .+|++.+++.+++++++..+.... . +..+++++++++++ +++++.|++...|++
T Consensus 152 ~~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~-~-------~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 152 FVATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKI-N-------PDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred EECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcC-C-------HHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 888887766655 357788889888777764332111 1 24578889998765 456667888889999
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
+.+++++.+ .++++++++|++. .+.++.+++++++.+ ++|+|+|+++++.++|+.||+++.
T Consensus 219 ~~li~~l~~-----------~~~~~~viv~G~~---~~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~--- 279 (380)
T PRK13609 219 KELCQSLMS-----------VPDLQVVVVCGKN---EALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT--- 279 (380)
T ss_pred HHHHHHHhh-----------CCCcEEEEEeCCC---HHHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe---
Confidence 999888753 2688988775421 146778888877665 689999999999999999999883
Q ss_pred CCCCcccHHHHHHHHcCCCEEeecccccccc-CCCce----EEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 366 AWGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~~----e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
++.|++++|||++|+||| +++ .+|.. +++. ++|..+...| +++++++|.++++|++.+++|
T Consensus 280 ---~~gg~t~~EA~a~g~PvI-------~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m 345 (380)
T PRK13609 280 ---KPGGITLSEAAALGVPVI-------LYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQM 345 (380)
T ss_pred ---CCCchHHHHHHHhCCCEE-------ECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHH
Confidence 345899999999999999 764 45421 2332 3455555667 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
++++++.. +.++++++++.+++.+...
T Consensus 346 ~~~~~~~~-~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 346 KEAMKSLY-LPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHhC-CCchHHHHHHHHHHhhhhh
Confidence 99998766 5589999999998887654
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=5.6e-27 Score=226.56 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=206.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc--------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-------------- 140 (477)
|||+|++... ||......+|+++|.++||+|++++...+... ......|+++....
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--------~~~~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--------RLVPKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--------cccccCCCceEEEeccCcCCCChHHHHH
Confidence 4788888555 45555667999999999999999985432110 01122344443221
Q ss_pred ----------chhhHHHhcCCcEEEEcCcchhhHHHH-HhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 141 ----------GQETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
...++.+..+||+||+|.......... ....+ .+++.+.+.. ..........+.++.+++.
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~---~~~~~~~~~~~~~d~ii~~ 142 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLG-----IPLFHHEQNA---VPGLTNKLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcC-----CCEEEECCCC---CccHHHHHHHHHhCeeEEC
Confidence 112445667899999997544332221 12222 2333322211 1111122233567777777
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH-H
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-F 288 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~-l 288 (477)
+....+++ +..+|+||++...+.+.. .+++++++++.++++++|+....|++.. +
T Consensus 143 ~~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 198 (348)
T TIGR01133 143 FPGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELV 198 (348)
T ss_pred chhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHH
Confidence 76554432 247999999977654321 1235677788889999998777888654 5
Q ss_pred HHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~ 367 (477)
+++++.+.+ ++++++ ++|++ ..+.+++.++++++.+.+.|. . .++.++|+.||++|.+|.
T Consensus 199 ~~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~-~~~~~~l~~ad~~v~~~g-- 259 (348)
T TIGR01133 199 PKALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-D-ENMAAAYAAADLVISRAG-- 259 (348)
T ss_pred HHHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-c-cCHHHHHHhCCEEEECCC--
Confidence 578877744 345554 44444 346788888888876666666 3 389999999999997542
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCC-------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg-------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
|++++|||++|+|+| +++.++ ..+++.++.+|++++++|.++++++++|.++++|++.+++|
T Consensus 260 ----~~~l~Ea~~~g~Pvv-------~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 328 (348)
T TIGR01133 260 ----ASTVAELAAAGVPAI-------LIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAM 328 (348)
T ss_pred ----hhHHHHHHHcCCCEE-------EeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 689999999999999 666543 23577788899999887645999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~ 459 (477)
++++++++. .+..+++++
T Consensus 329 ~~~~~~~~~-~~~~~~i~~ 346 (348)
T TIGR01133 329 AEAARKLAK-PDAAKRIAE 346 (348)
T ss_pred HHHHHhcCC-ccHHHHHHh
Confidence 999987663 345554443
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=1.7e-26 Score=224.00 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=199.1
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc---h-----------------------h---hHhhc
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---K-----------------------L---DYVKH 199 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---~-----------------------~---~~~~~ 199 (477)
.++|++|+|....+..+..+.+...+ .+.+++.|....... . . ..+..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~---VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVD---VSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCC---CCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 57999999987666655544433222 478889996432211 0 0 01122
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHH---------HHHHHHHHHHhhCCCCCC
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA---------KRVLREHVRESLGVRNED 270 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~---------~~~~~~~~r~~~~~~~~~ 270 (477)
...++.++++|..+...+.. .|+.++++ |||||+|.+.|....+... ....+..++.++++++++
T Consensus 224 a~~Ad~fttVS~it~~E~~~----Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEH----LLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHHH----HhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 34667777777777776654 66777765 9999999999876542210 111234567778888777
Q ss_pred eEEEE-Eeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHH-------------
Q 011779 271 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESEL------------- 328 (477)
Q Consensus 271 ~~il~-vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l------------- 328 (477)
.++++ +||+.. +||+|.+|+|+.++...++..+.+..=+-|+++-.+... ..+..+++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77777 799998 999999999999998877652111111334443322110 00111111
Q ss_pred ------------------------------------------------------HHHHHhcCCC----Cc--EEEccc--
Q 011779 329 ------------------------------------------------------RNYVMQKKIQ----DR--VHFVNK-- 346 (477)
Q Consensus 329 ------------------------------------------------------~~~~~~~~l~----~~--v~~~g~-- 346 (477)
...+++.++- ++ |+|++.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1122222232 22 566552
Q ss_pred -------cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc----eEEeecC-Cceeeec
Q 011779 347 -------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT----TEIVVNG-TTGLLHP 414 (477)
Q Consensus 347 -------~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~----~e~v~~~-~~G~l~~ 414 (477)
-.+..++|+.||++|+||. +||||++++||||||+||| +|+.+|+ .|++.++ ..|+.+.
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI-------~t~~~gf~~~v~E~v~~~~~~gi~V~ 528 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSI-------TTNLSGFGCFMEEHIEDPESYGIYIV 528 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEE-------EccCcchhhhhHHHhccCCCceEEEe
Confidence 1457889999999999999 9999999999999999999 9999998 5555444 3566665
Q ss_pred CCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 415 VGK-----EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 415 ~~d-----~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+.+ +++++++++|.++++. +.++.+..+++ +...+.|+|++.++.|.+.|..+++
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 211 1378899999998854 56666666644 3444789999999999999998775
No 76
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.95 E-value=4.5e-27 Score=203.21 Aligned_cols=169 Identities=29% Similarity=0.504 Sum_probs=153.3
Q ss_pred HHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 257 ~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
++..+.+.+.+.++++|+++||+.+.||++.+++++..+.+. ..+++.++|+|.+ ++...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEK------KNPNYKLVIVGDG-----EYKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHH------HHTTEEEEEESHC-----CHHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhh------cCCCeEEEEEccc-----cccccccccccccc
Confidence 567788888889999999999999999999999999998652 1388999999977 68888999999999
Q ss_pred CCCcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 337 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 337 l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
+.++++|+|... ++..+|+.||++|+||. .|+||++++|||++|+||| +++.|+..|++.++.+|++++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI-------~~~~~~~~e~~~~~~~g~~~~ 141 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVI-------ASDIGGNNEIINDGVNGFLFD 141 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEE-------EESSTHHHHHSGTTTSEEEES
T ss_pred ccccccccccccccccccccccceecccccc--cccccccccccccccccee-------eccccCCceeeccccceEEeC
Confidence 999999999975 99999999999999999 8999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
+.| +++++++|.+++++++.++.|+++++++
T Consensus 142 ~~~--~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 142 PND--IEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 998 9999999999999999999999999874
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.94 E-value=1.4e-25 Score=218.54 Aligned_cols=274 Identities=13% Similarity=0.072 Sum_probs=188.8
Q ss_pred hHHHhcCCcEEEEcCcchhh----HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHH
Q 011779 144 TINTALKADLIVLNTAVAGK----WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKN 219 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (477)
+++++.+||+||++.+.... .+........ ...+++..+++... .......+.++.+++.+....+.+.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~--~~~p~~~~~tD~~~----~~~~w~~~~~d~~~~~s~~~~~~l~- 166 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELG--KKIPFTTVVTDLGT----CHPTWFHKGVTRCFCPSEEVAKRAL- 166 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccC--CCCCEEEEECCCCC----cCcccccCCCCEEEECCHHHHHHHH-
Confidence 45567899999997655322 2222111111 12355544544311 1112223677888887777666554
Q ss_pred HhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHH
Q 011779 220 RTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299 (477)
Q Consensus 220 ~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 299 (477)
.+|++.+++.+++++++.+++.+.. .+..+|+++|++++.++|+++|+....|++..+++++..+....
T Consensus 167 ----~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~ 235 (382)
T PLN02605 167 ----KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDK 235 (382)
T ss_pred ----HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccc
Confidence 4578889999999999876543321 14668999999999999999999988999999999987653100
Q ss_pred HhhccCcCceE-EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 300 KEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 300 ~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
.. ..++.+ ++++|.+. ..++++++. ....+|+|+|+++++.++|++||++|.++ .|++++||
T Consensus 236 ~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EA 298 (382)
T PLN02605 236 NL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEA 298 (382)
T ss_pred cc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHH
Confidence 00 125565 56777662 234555543 22357999999999999999999999754 37899999
Q ss_pred HHcCCCEEeecccccccc------CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Q 011779 379 MAFQLPVLLQKCLYQGTA------AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEI 451 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~------~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~ 451 (477)
|+||+||| +++ .|+...+ .++..|+.. +| +++++++|.+++.| ++.+++|++++++.. ..
T Consensus 299 ma~g~PvI-------~~~~~pgqe~gn~~~i-~~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~-~~ 365 (382)
T PLN02605 299 LIRGLPII-------LNGYIPGQEEGNVPYV-VDNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLA-RP 365 (382)
T ss_pred HHcCCCEE-------EecCCCccchhhHHHH-HhCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC
Confidence 99999999 666 3444334 444566654 56 99999999999998 999999999999877 44
Q ss_pred cCHHHHHHHHHHHH
Q 011779 452 FQEHHMAERIAVVL 465 (477)
Q Consensus 452 fs~~~~~~~~~~~~ 465 (477)
.+.+.+++.+.+..
T Consensus 366 ~a~~~i~~~l~~~~ 379 (382)
T PLN02605 366 EAVFDIVHDLHELV 379 (382)
T ss_pred chHHHHHHHHHHHh
Confidence 67777777666543
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.94 E-value=3.7e-25 Score=230.07 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=211.7
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.-|+|.+|....... ..+++...|. .++.+.+|...+.. +.....+.+-.+|.+-..+...+..+.+...
T Consensus 147 ~~d~vWvhDYhL~ll-p~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLMFL-PQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhhhH-HHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 458999998554443 4444444544 47788888754332 2223334444555555555555555554433
Q ss_pred hhhccC-----------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
..++.. ..++.++|||||.+.|.+.............++++++ ++.+|+++||+.+.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 333322 2468899999999988765432222222335566654 56788999999999999999999
Q ss_pred HHHHHHHHHhhccCcCce----EEEEEecCCCcchHHHHHHHHHHHhcC--CCCc--------EEEcc-cc--CCHHHHH
Q 011779 292 FYESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-KT--LTVAPYL 354 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~----~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~--------v~~~g-~~--~~l~~~~ 354 (477)
++.+.+ ++|++ .|+.++.....+.+..+++++.++++. +.++ |++++ .. +++..+|
T Consensus 301 fe~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 999877 55664 455444322222356667777777663 3222 33333 22 7899999
Q ss_pred HhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
+.||+||+||. .||||++++||||||+| +| .|+.+|..+.+ +.+|++++|.| ++++|++|.++
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlV-------lSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~a 440 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLV-------LSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEA 440 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEE-------eeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHH
Confidence 99999999999 99999999999999999 99 99999998876 56899999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
++ +++.++++.++.++++ ..++|..+++.+++.++++..+
T Consensus 441 L~m~~~er~~r~~~~~~~v-~~~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 441 LNMSDEERETRHRHNFQYV-KTHSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HhCCHHHHHHHHHHHHHhh-hhCCHHHHHHHHHHHHHHHhhh
Confidence 99 8888988889899888 5589999999999999887653
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=1.8e-24 Score=211.02 Aligned_cols=340 Identities=11% Similarity=0.090 Sum_probs=215.3
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhCC---cEEEEEe---cCCCCChhhHHhhhhh-----------hhhhcCc
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVG---TKVNWIT---IQKPSEEDEVIYSLEH-----------KMWDRGV 134 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G---~~V~v~~---~~~~~~~~~~~~~~~~-----------~~~~~g~ 134 (477)
.+||||+++.++ |||. ..+..|.++|.++| .+|.++- ...+.........+.. .+.....
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~ 81 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD 81 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch
Confidence 457899999665 5555 77889999998875 4565444 1212111100000000 0000000
Q ss_pred EE-------EeccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccce
Q 011779 135 QV-------ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (477)
Q Consensus 135 ~v-------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (477)
.. ........+.+..+||+|+++.+.... ..+...+. ...|++...++.. .... ...+.++.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~~--~~iP~~~v~td~~---~~~~--w~~~~~d~~~ 152 (391)
T PRK13608 82 KLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVM--SVLTEQFN--INIPVATVMTDYR---LHKN--WITPYSTRYY 152 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHH--HHHHHhcC--CCCCEEEEeCCCC---cccc--cccCCCCEEE
Confidence 00 011223455667899999998765432 22222111 1134433233221 1111 1235677788
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~~~Kg~~ 286 (477)
+.+....+.+. ..|++.+++.++.++++..+.... .+...++++|++++++ ++++.|+++..||++
T Consensus 153 v~s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~--------~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 153 VATKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPI--------DQKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ECCHHHHHHHH-----HcCCCHHHEEEECeecChHhcccc--------cHHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 87777766654 347888899998888875533211 1345677889886654 556789999899999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~ 366 (477)
.+++++.+ ..+++++++++++.. ...+++++. .+..++|.++|+++++.++|+.||++|.
T Consensus 220 ~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~~~---~~~~~~v~~~G~~~~~~~~~~~aDl~I~---- 279 (391)
T PRK13608 220 TMITDILA----------KSANAQVVMICGKSK---ELKRSLTAK---FKSNENVLILGYTKHMNEWMASSQLMIT---- 279 (391)
T ss_pred HHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHHHH---hccCCCeEEEeccchHHHHHHhhhEEEe----
Confidence 99998532 336788876643310 233444433 3444689999999999999999999995
Q ss_pred CCCcccHHHHHHHHcCCCEEeecccccccc-CCCc----eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
.+.|++++|||++|+|+| +++ .+|. ..++.+.+.|+. .+| .++++++|.++++|++.+++|+
T Consensus 280 --k~gg~tl~EA~a~G~PvI-------~~~~~pgqe~~N~~~~~~~G~g~~--~~~--~~~l~~~i~~ll~~~~~~~~m~ 346 (391)
T PRK13608 280 --KPGGITISEGLARCIPMI-------FLNPAPGQELENALYFEEKGFGKI--ADT--PEEAIKIVASLTNGNEQLTNMI 346 (391)
T ss_pred --CCchHHHHHHHHhCCCEE-------ECCCCCCcchhHHHHHHhCCcEEE--eCC--HHHHHHHHHHHhcCHHHHHHHH
Confidence 235889999999999999 664 3331 223334445544 446 8999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++++.. +.|+++.+++.+.+++....+
T Consensus 347 ~~~~~~~-~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 347 STMEQDK-IKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHhhhhhh
Confidence 9999876 559999999999998876543
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.93 E-value=7.7e-24 Score=221.05 Aligned_cols=294 Identities=16% Similarity=0.160 Sum_probs=202.2
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++...+. .++.+.+|...+.. +.....+.+-.+|.+--.+......+.+..
T Consensus 132 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 46778888754322 222223333344444444555454444444
Q ss_pred Hhhhcc-----------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+.++. ...++.++|||||.+.|.+...........+.+|+.+ +++++|+++||+.+.||++.+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 333331 1235899999999999987643322222234456554 46679999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhcC----C---CCcEEEcccc--CCHHHH
Q 011779 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQKK----I---QDRVHFVNKT--LTVAPY 353 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~~----l---~~~v~~~g~~--~~l~~~ 353 (477)
|+.++.+ ++|+ ++|+++|.+.... .+++.++.+++.+.+ . .+.+.|.|.. +++..+
T Consensus 286 A~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 286 AFERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999877 4564 7899887442221 123444444443322 1 1234566653 889999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcC-----CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ-----LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G-----~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
|+.||++++||. .||||++++|||+|| .||+ +...|+..+++ .|++++|.| +++++++|.
T Consensus 359 y~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vl-------s~~~G~~~~l~----~~llv~P~d--~~~la~ai~ 423 (726)
T PRK14501 359 YRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLIL-------SEMAGAAAELA----EALLVNPND--IEGIAAAIK 423 (726)
T ss_pred HHhccEEEeccc--ccccCcccceEEEEcCCCCceEEE-------ecccchhHHhC----cCeEECCCC--HHHHHHHHH
Confidence 999999999999 999999999999994 5677 77778888775 489999999 999999999
Q ss_pred HHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 429 KLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 429 ~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
+++.+ ++.+.+..+++++.+ ..|||+.+++++++.|+++..+
T Consensus 424 ~~l~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 424 RALEMPEEEQRERMQAMQERL-RRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhh
Confidence 99984 455566667788887 5799999999999999988654
No 81
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=6.6e-23 Score=185.42 Aligned_cols=224 Identities=27% Similarity=0.271 Sum_probs=161.5
Q ss_pred EEEEeccCC--CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 77 Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
|+++++... .||.+++...+++.|.++||+|+++. . .........+..+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~----~---------------------~~~~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA----L---------------------LLLLLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE----e---------------------chHHHHHHHhhcCCCEE
Confidence 456666655 47888999999999999999999998 0 00111223335799999
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEE
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (477)
|+++............. . ...++++++|+........... ..+...
T Consensus 56 ~~~~~~~~~~~~~~~~~-~--~~~~~i~~~h~~~~~~~~~~~~-----------------~~~~~~-------------- 101 (229)
T cd01635 56 HAHGYYPAPLALLLAAR-L--LGIPLVLTVHGVNRSLLEGVPL-----------------SLLALS-------------- 101 (229)
T ss_pred EEcCCCcHHHHHHHHHh-h--CCCCEEEEEcCccHhhcccCcH-----------------HHHHHH--------------
Confidence 99986665544311111 1 2257888888764332211000 000000
Q ss_pred EecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE
Q 011779 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314 (477)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv 314 (477)
.......++|++.+.||++.+++++..+.+ +.++++++++
T Consensus 102 ---------------------------------~~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~ 141 (229)
T cd01635 102 ---------------------------------IGLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIA 141 (229)
T ss_pred ---------------------------------HhhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEE
Confidence 000011189999999999999999999976 5579999999
Q ss_pred ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccc
Q 011779 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391 (477)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~ 391 (477)
|.+ +.....+..+.+.+..++|.++|+. +++..+++.||+++.||. .|++|++++|||++|+|+|
T Consensus 142 G~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi----- 209 (229)
T cd01635 142 GDG-----PEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVI----- 209 (229)
T ss_pred eCC-----CChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEE-----
Confidence 998 3444455546677778899999983 556666777999999999 8999999999999999999
Q ss_pred cccccCCCceEEeecCCceeee
Q 011779 392 YQGTAAGGTTEIVVNGTTGLLH 413 (477)
Q Consensus 392 ~~~~~~gg~~e~v~~~~~G~l~ 413 (477)
+++.++..|++.++++|+++
T Consensus 210 --~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 210 --ATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred --EcCCCCcceEEECCCceEEC
Confidence 99999999999999999874
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=2.5e-22 Score=195.16 Aligned_cols=324 Identities=14% Similarity=0.018 Sum_probs=200.6
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC-CChhhHHhhhhhhhhhcCcEEE------------------
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVI------------------ 137 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~g~~v~------------------ 137 (477)
++++......++....-..++..|+++||.|.++.+... ..... .......+.
T Consensus 6 ~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T cd04950 6 DILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQP--------RGRDWVRVVLRLRAALRRPRRLDPLIP 77 (373)
T ss_pred eEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCC--------CCcccEEeeecccccccCccccCcccc
Confidence 333333334455567788999999999999999885432 11000 000011110
Q ss_pred ecc------chh-hHH-----HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch------hhHhhc
Q 011779 138 SAK------GQE-TIN-----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKH 199 (477)
Q Consensus 138 ~~~------~~~-~~~-----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~ 199 (477)
+.. ... .+. ...+..+++++.+....+... . ...++++++++....... ......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~ 150 (373)
T cd04950 78 ARRRRLLRLLLNALLFWAQLELGFGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRL 150 (373)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHH
Confidence 000 000 111 134455666666655443332 1 124677887765432211 123455
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
++.++.+++.|....+.+.+ ++ .++.+||||+|.+.|.+...... ..+... ..++++++|+|++
T Consensus 151 ~~~ad~vi~~S~~l~~~~~~-----~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~~--~~~~~~i~y~G~l 214 (373)
T cd04950 151 LKRADLVFTTSPSLYEAKRR-----LN---PNVVLVPNGVDYEHFAAARDPPP------PPADLA--ALPRPVIGYYGAI 214 (373)
T ss_pred HHhCCEEEECCHHHHHHHhh-----CC---CCEEEcccccCHHHhhcccccCC------ChhHHh--cCCCCEEEEEecc
Confidence 67888888888887766543 23 68999999999998866432110 001111 2466899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
.+.++++.+.++++ ..|+++|+++|++.. ...... +...+||+|+|++ +++..+|+.+
T Consensus 215 ~~~~d~~ll~~la~-----------~~p~~~~vliG~~~~-----~~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 215 AEWLDLELLEALAK-----------ARPDWSFVLIGPVDV-----SIDPSA----LLRLPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred ccccCHHHHHHHHH-----------HCCCCEEEEECCCcC-----ccChhH----hccCCCEEEeCCCCHHHHHHHHHhC
Confidence 99888776655443 238999999999721 111111 1113689999986 8899999999
Q ss_pred CEEEEcCCC---CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 358 DVLVQNSQA---WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 358 Dv~v~pS~~---~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
|++++|+.. ..+++|++++||||+|+||| +++.++..+ ....+++ .++| +++++++|.+++.++
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVV-------at~~~~~~~---~~~~~~~-~~~d--~~~~~~ai~~~l~~~ 341 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVV-------ATPLPEVRR---YEDEVVL-IADD--PEEFVAAIEKALLED 341 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEE-------ecCcHHHHh---hcCcEEE-eCCC--HHHHHHHHHHHHhcC
Confidence 999999862 12468999999999999999 888765443 3333444 4556 999999999976633
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
..... +++++ +.+.|||+..++++.+.+.+
T Consensus 342 ~~~~~--~~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 342 GPARE--RRRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred CchHH--HHHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 22111 12222 45679999999999865543
No 83
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=9.1e-21 Score=168.10 Aligned_cols=356 Identities=17% Similarity=0.157 Sum_probs=237.8
Q ss_pred ccEEEEEeccCCC-CchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhh----hhhhhhhcCcEEEeccchh---
Q 011779 74 SKLVLLVSHELSL-SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKGQE--- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~----~~~~~~~~g~~v~~~~~~~--- 143 (477)
.+.+.|++|+.+. ||+|+++..-.+.+++.- +...|.+.+-+..++..... +.-.+...++..+.++...
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVe 122 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVE 122 (465)
T ss_pred ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeee
Confidence 4679999999888 677799999999988753 34444444433333322221 1222333445544332210
Q ss_pred ---------------------hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------------
Q 011779 144 ---------------------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------------ 190 (477)
Q Consensus 144 ---------------------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------ 190 (477)
..+-...||+.+-.-..+.. ....... ...|++.++|-..-.
T Consensus 123 a~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs-~p~~r~l----~~~~V~aYvHYP~iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 123 ASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFS-YPIFRRL----RRIPVVAYVHYPTISTDMLKKLFQRQK 197 (465)
T ss_pred cccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcch-hHHHHHH----ccCceEEEEecccccHHHHHHHHhhhh
Confidence 11124688887655322211 1111111 115677777752110
Q ss_pred -----cchhhHhhcc--------cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHH
Q 011779 191 -----YFKLDYVKHL--------PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 257 (477)
Q Consensus 191 -----~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (477)
+-+..+++.+ ..++.++++|..+.+.+.+ ..+ ...+.+++.+++.+..+..
T Consensus 198 s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~q----iW~--~~~~~iVyPPC~~e~lks~---------- 261 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQ----IWQ--SNTCSIVYPPCSTEDLKSK---------- 261 (465)
T ss_pred cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHH----Hhh--ccceeEEcCCCCHHHHHHH----------
Confidence 0111122221 3455566666666555443 222 2568899999987743322
Q ss_pred HHHHHhhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC-CcchHHHHHHHHHHHhc
Q 011779 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQK 335 (477)
Q Consensus 258 ~~~r~~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~ 335 (477)
.+- ..+...++++|.+.|+|++. +++.++-...+.+.. +..++++|+++|+-- ..+...-+.++++++++
T Consensus 262 ------~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~-a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 262 ------FGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLE-ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred ------hcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchh-hccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 222 25668899999999999999 555554433221110 044679999999853 33445677889999999
Q ss_pred CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-eEEeec---CCc
Q 011779 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIVVN---GTT 409 (477)
Q Consensus 336 ~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v~~---~~~ 409 (477)
+++++|.|.-.. +++..+|..|.+-|..-- .|.||+.+.|+||+|+-.| +.+.||. -|+|.+ ..+
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi-------~h~SgGP~lDIV~~~~G~~t 404 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPI-------VHNSGGPLLDIVTPWDGETT 404 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEE-------EeCCCCCceeeeeccCCccc
Confidence 999999997764 899999999999998886 9999999999999999999 9999987 688865 347
Q ss_pred eeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 410 GLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++.+. .++.++++.+++. +++.|..|+++||..+ .+|+..++.+.+.+.+..+++..
T Consensus 405 GFla~t----~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 405 GFLAPT----DEEYAEAILKIVKLNYDERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred eeecCC----hHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhccc
Confidence 999853 6899999999998 8888999999999877 67999999999999999888654
No 84
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.90 E-value=6.6e-21 Score=185.65 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=206.3
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|.-..... ...+....+. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.+..
T Consensus 131 ~~~d~vWVhDYhL~ll-p~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 131 AEGATVWVHDYNLWLV-PGYIRQLRPD--LKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCCCEEEEecchhhHH-HHHHHHhCCC--CeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998554443 3444444443 46778888754332 222233333344444444444444444433
Q ss_pred HhhhccC--------------------------------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q 011779 222 RERLRIK--------------------------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (477)
Q Consensus 222 ~~~~~~~--------------------------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (477)
.+.+|.. .-++.++|.|||.+.|.............+.+|++++ +
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~ 284 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA---G 284 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---C
Confidence 3333221 1137899999999999765443333344567888887 6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhc------
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQK------ 335 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~------ 335 (477)
+.+|+.++|+++.||++..++||.++++ ++|+ +.|+++|.+.... ..+..++++++.+.
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~-------~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~ 357 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLE-------RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFAR 357 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHH-------hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCC
Confidence 7889999999999999999999999987 5564 7999998764322 23556666666654
Q ss_pred -CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCC
Q 011779 336 -KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGT 408 (477)
Q Consensus 336 -~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~ 408 (477)
+..+-+.|.+.. +++..+|+.||+++.+|. .||++++..|+|+|+. |+| .|..+|..+.+ .
T Consensus 358 ~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLI-------LSefaGaa~~l---~ 425 (487)
T TIGR02398 358 IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLV-------LSEFAGAAVEL---K 425 (487)
T ss_pred CCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEE-------Eeccccchhhc---C
Confidence 444556777774 889999999999999999 9999999999999998 999 99999998666 3
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
.+++++|.| ++++|++|.+.++ ..+.+++.-+..++.+ ..++...+++.+++-+.
T Consensus 426 ~AllVNP~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 426 GALLTNPYD--PVRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRWADEFLAAVS 481 (487)
T ss_pred CCEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHhh
Confidence 689999999 9999999999999 4555666666677777 55899999988875443
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=1.9e-21 Score=190.09 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=206.5
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe--------------c
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------A 139 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~--------------~ 139 (477)
+|||++++... |+..+...++++|++.++++.++........... +...+....+.+.. .
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIR 74 (380)
T ss_pred CceEEEEecCc---CHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHH
Confidence 46888887544 4455555699999998888888874332111000 00000000111111 1
Q ss_pred cchhhHHHhcCCcEEEEcCcc-hh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHH
Q 011779 140 KGQETINTALKADLIVLNTAV-AG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
...+.+.+..+||+||++... .. .....+...+ .|++.+.+.....+......+..+.++.+++.+....+.+
T Consensus 75 ~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~-----ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 149 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAG-----IPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFY 149 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCC-----CCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHH
Confidence 112455567899999998632 11 1122222223 3444444432111222223334566788888887766665
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEe-ecccC-CCHHHHHHHHHH
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIIN-SVSRG-KGQDLFLHSFYE 294 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vG-rl~~~-Kg~~~ll~a~~~ 294 (477)
.+ +|. ++.++.|++...... .+ .+..++++++++++.+++ ++.| |.... ++++.+++++..
T Consensus 150 ~~-----~g~---~~~~~G~p~~~~~~~-~~-------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~ 213 (380)
T PRK00025 150 DK-----LGV---PVTFVGHPLADAIPL-LP-------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQL 213 (380)
T ss_pred Hh-----cCC---CeEEECcCHHHhccc-cc-------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 43 332 255555554332111 01 135678889988776654 4445 33333 447889999988
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
+.+ +.|+++++++|+++ +.++++++.+++. ++. +.+.. .++..+|+.||++|.+| |.
T Consensus 214 l~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~ 271 (380)
T PRK00025 214 LQQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GT 271 (380)
T ss_pred HHH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cH
Confidence 865 55789999998632 5677788888776 553 55543 58999999999999987 57
Q ss_pred HHHHHHHcCCCEEeecc----ccc------cccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 374 ITIEAMAFQLPVLLQKC----LYQ------GTAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~----~~~------~~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
+++|||++|+|+|+++. ++. ..+.+++++++.++. .+++.+..| ++++++++.++++|++.+++|+
T Consensus 272 ~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~ 349 (380)
T PRK00025 272 VTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALL 349 (380)
T ss_pred HHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHH
Confidence 88899999999993311 100 014566677776654 456666666 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++.+..+. . ....++++.+.+.+++.
T Consensus 350 ~~~~~~~~~-~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 350 EGFTELHQQ-L-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHH-h-CCCHHHHHHHHHHHHhh
Confidence 998655543 2 22345555555555543
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.87 E-value=6.3e-20 Score=178.17 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=197.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcE--E-Eec-----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISA----------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~--v-~~~----------- 139 (477)
|||++++..-+-- ..+..+.++|.+. ++++.++...... .. ........++. + +..
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 71 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EM---LDQVLDLFHLPPDYDLNIMSPGQTLGEIT 71 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HH---HHHHHHhcCCCCCeeeecCCCCCCHHHHH
Confidence 5788887443211 3577888999875 5666555532211 11 11111122221 1 111
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccc--cc--chhhH-hhcc-cccccce
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG--HY--FKLDY-VKHL-PLVAGAM 207 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~--~~--~~~~~-~~~~-~~~~~~~ 207 (477)
.....+.+..+||+||+|+.....+.. .+...++ |++..-++... .+ +.... +... +.++.++
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~i-----pv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~ 146 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQI-----PVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHF 146 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCC-----CEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhcc
Confidence 112355567899999999743322211 2233333 34322222211 11 11111 1112 2346667
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~ 286 (477)
+.+....+.+. ..|++++++.+++||+....+...... .+..++++++. ++.++++..+|. ...||++
T Consensus 147 ~~s~~~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~ 215 (365)
T TIGR00236 147 APTEQAKDNLL-----RENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRRENVGEPLE 215 (365)
T ss_pred CCCHHHHHHHH-----HcCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhhhhhHHH
Confidence 77776666654 348888999999999743332221110 12456667763 334444444454 2468999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+.++.+ +.|+++++++|.+.. ..... +.+.++..++|+|+|.. .++..+|+.+|+++.+|
T Consensus 216 ~ll~a~~~l~~-------~~~~~~~vi~~~~~~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S 282 (365)
T TIGR00236 216 NIFKAIREIVE-------EFEDVQIVYPVHLNP---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS 282 (365)
T ss_pred HHHHHHHHHHH-------HCCCCEEEEECCCCh---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC
Confidence 99999998865 457889988865421 22222 33334556789999975 56778899999999876
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
|..++|||++|+||| ++ +.|+..+++.++ .+.+++ .| ++++++++.++++|++.+++|+++
T Consensus 283 -------g~~~~EA~a~g~PvI-------~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 283 -------GGVQEEAPSLGKPVL-------VLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred -------hhHHHHHHHcCCCEE-------ECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhc
Confidence 345899999999999 75 678888888765 555664 45 999999999999999999888776
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~ 463 (477)
...+. +..+++++++.+.+
T Consensus 345 ~~~~g-~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 345 SNPYG-DGEASERIVEELLN 363 (365)
T ss_pred CCCCc-CchHHHHHHHHHHh
Confidence 63322 23344555554444
No 87
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=4.4e-19 Score=170.98 Aligned_cols=203 Identities=30% Similarity=0.456 Sum_probs=171.1
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
++.+++++++.+.+... ..++..+ ...++++||+.+.||++.+++++..+.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKK-------RGPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhh-------hcCC
Confidence 78999999999876542 1122233 3789999999999999999999999876 3455
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.++++|.+... ...+...+.+.+..+++.|+|... ++..+++.+|++++||. .|+||++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998421 356666888888778999999864 78888999999999999 7999999999999999999
Q ss_pred eeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 387 LQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++.++..+++.++.+|++++..| ++++++++..++++++.++.+++.+++.+.+.|+|+..++++.+++.
T Consensus 305 -------~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 305 -------ASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred -------ECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999998877788777666 99999999999999888888888777777688999999999999998
Q ss_pred HHHh
Q 011779 467 EVLK 470 (477)
Q Consensus 467 ~~~~ 470 (477)
....
T Consensus 376 ~~~~ 379 (381)
T COG0438 376 ELLA 379 (381)
T ss_pred HHHh
Confidence 8764
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.86 E-value=8.5e-20 Score=177.48 Aligned_cols=328 Identities=17% Similarity=0.121 Sum_probs=200.4
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEE-Eecc------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQV-ISAK------------ 140 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v-~~~~------------ 140 (477)
||++++..-+-- ..+.-+.++|++. |+++.++... +-....... +.......+..+ ....
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVT--FFEILFIIKPDYDLLLGSDSQSLGAQTAG 75 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHH--HHHhhCCCCCCEEEecCCCCCCHHHHHHH
Confidence 467777433211 3577888999887 8999976643 222111111 111101111111 1111
Q ss_pred ---chhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccc----ccchhhHhhcccccccceeeeh
Q 011779 141 ---GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG----HYFKLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 141 ---~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~----~~~~~~~~~~~~~~~~~~~~s~ 211 (477)
.........+||+||+|......+.. .+...+ .|++...|+... ..+........+..+.+++.+.
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~-----iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~ 150 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLG-----IPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTE 150 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcC-----CCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCH
Confidence 01233455799999999743322222 222222 345443333221 1111111112345566677777
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc---CCCHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDL 287 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~---~Kg~~~ 287 (477)
...+.+. .+|++.+++.+++||+ |...+...... ....++.++++++++++++.||... .||++.
T Consensus 151 ~~~~~l~-----~~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~ 219 (363)
T cd03786 151 EARRNLL-----QEGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHRVENVDDGEQLEE 219 (363)
T ss_pred HHHHHHH-----HcCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCCccccCChHHHHH
Confidence 7666554 4588889999999996 43322211110 1223457788777788888998775 799999
Q ss_pred HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC-CCcEEEccc--cCCHHHHHHhcCEEEEcC
Q 011779 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK--TLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~--~~~l~~~~~~aDv~v~pS 364 (477)
++++++++.+ .++.+++.|.+ +..+.+++.+.++++ .++|.|+|. .+++..+|+.||++|.+|
T Consensus 220 l~~al~~l~~---------~~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S 285 (363)
T cd03786 220 ILEALAELAE---------EDVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS 285 (363)
T ss_pred HHHHHHHHHh---------cCCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC
Confidence 9999998854 25677776766 567788888888876 678999975 378999999999999998
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCC-CCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
. | +..|||++|+||| +++. +...+.+. +|..+..+ | +++++++|.++++++..+..|.
T Consensus 286 g------g-i~~Ea~~~g~PvI-------~~~~~~~~~~~~~---~g~~~~~~~~--~~~i~~~i~~ll~~~~~~~~~~- 345 (363)
T cd03786 286 G------G-IQEEASFLGVPVL-------NLRDRTERPETVE---SGTNVLVGTD--PEAILAAIEKLLSDEFAYSLMS- 345 (363)
T ss_pred c------c-HHhhhhhcCCCEE-------eeCCCCccchhhh---eeeEEecCCC--HHHHHHHHHHHhcCchhhhcCC-
Confidence 3 3 4799999999999 7654 33556654 44444443 4 8999999999999988776663
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
...|.-...++++.++
T Consensus 346 ------~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 346 ------INPYGDGNASERIVEI 361 (363)
T ss_pred ------CCCCCCCHHHHHHHHH
Confidence 2334444455555444
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.85 E-value=1.7e-19 Score=172.28 Aligned_cols=290 Identities=10% Similarity=0.088 Sum_probs=189.8
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC-cEEEEcCcchhh-H
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA-DLIVLNTAVAGK-W 164 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-DiV~~~~~~~~~-~ 164 (477)
.|+...-.+..+.+.+.|+++..+......... .. ..... ...+....++ |+||+++|.... .
T Consensus 15 ~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~-------------~~~~~~~~~~~Dvv~~~~P~~~~~~ 79 (333)
T PRK09814 15 SAALKAKNDVTKIAKQLGFEELGIYFYNIKRDS-LS-ERSKR-------------LDGILASLKPGDIVIFQFPTWNGFE 79 (333)
T ss_pred chHHHHHHHHHHHHHHCCCeEeEEEecccccch-HH-HHHHH-------------HHHHHhcCCCCCEEEEECCCCchHH
Confidence 567788889999999999998766533211100 00 00001 1123334556 999999875532 1
Q ss_pred HHHHhhhCCCccccceeeeeeecccccch------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC
Q 011779 165 LDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (477)
+...+...+.....+++.++|+....... ......++.++.+++.|....+++.+ .|++..++.++++.
T Consensus 80 ~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~-----~g~~~~~i~~~~~~ 154 (333)
T PRK09814 80 FDRLFVDKLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLVE-----EGLTTDKIIVQGIF 154 (333)
T ss_pred HHHHHHHHHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHHH-----cCCCcCceEecccc
Confidence 11111111112236889999997643221 22345667889999999998888764 36666778777766
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC
Q 011779 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (477)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~ 318 (477)
.+....... . .+...+.|+|+|++...+++ . + ..++++|+|+|+|+
T Consensus 155 ~~~~~~~~~--------------~---~~~~~~~i~yaG~l~k~~~l----~------~-------~~~~~~l~i~G~g~ 200 (333)
T PRK09814 155 DYLNDIELV--------------K---TPSFQKKINFAGNLEKSPFL----K------N-------WSQGIKLTVFGPNP 200 (333)
T ss_pred ccccccccc--------------c---cccCCceEEEecChhhchHH----H------h-------cCCCCeEEEECCCc
Confidence 543211100 0 01345689999999843211 1 1 12679999999983
Q ss_pred CcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC---------CCCcccHHHHHHHHcCCCEEe
Q 011779 319 NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---------WGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~---------~~E~~g~~~lEAma~G~PvI~ 387 (477)
... ...++|+|+|+. +++..+|+. |+.+.+... ..-.+|.++.|+||+|+|||
T Consensus 201 -----~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI- 264 (333)
T PRK09814 201 -----EDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVI- 264 (333)
T ss_pred -----ccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEE-
Confidence 222 234799999986 889999988 665544320 01257888999999999999
Q ss_pred eccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 388 QKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 388 ~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
+++.++..++|+++.+|++++ + .+++++++..+ +++.+++|++++++.+ +++.--.+++
T Consensus 265 ------~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~-~~~~~g~~~~ 323 (333)
T PRK09814 265 ------VWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKIS-KLLRNGYFTK 323 (333)
T ss_pred ------ECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHH-HHHhcchhHH
Confidence 999999999999999999998 4 78999999885 4577899999999877 4444444433
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.83 E-value=1.4e-18 Score=179.84 Aligned_cols=293 Identities=15% Similarity=0.151 Sum_probs=202.3
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.-|+|.+|...... +..+++...|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.....
T Consensus 231 ~gD~VWVHDYHL~L-lP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLMF-LPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhhH-HHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 44899999855443 34445555554 46778888754332 2222333333445554455555544444333
Q ss_pred hhhccC-----------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
+.+|.. .-++.+.|.|||.+.|.............+.++++++ ++.+|+.++|+++.||+...++|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 333322 1236678999999999876444333444567888876 56799999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceE--EEEE--ecCCCcchHHHHH----HHHHHHhc----CCCC--cEEEccc---cCCHHHHH
Q 011779 292 FYESLELIKEKKLEVPSVH--AVII--GSDMNAQTKFESE----LRNYVMQK----KIQD--RVHFVNK---TLTVAPYL 354 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~--l~iv--G~g~~~~~~~~~~----l~~~~~~~----~l~~--~v~~~g~---~~~l~~~~ 354 (477)
|.++++ ++|+++ ++++ ......+.+..++ +.+++.+. |-.+ -|+++.. .+++..+|
T Consensus 385 fE~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 385 FEKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 999887 556643 4444 2211111133334 44443332 2111 1444443 28899999
Q ss_pred HhcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 355 AAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
+.||++|+||. .||++++..|||+|+. ++| .+..+|..+.+ +..+++++|.| ++++|++|.+.
T Consensus 458 ~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLI-------LSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~A 524 (934)
T PLN03064 458 AVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLI-------LSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQA 524 (934)
T ss_pred HhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeE-------EeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHH
Confidence 99999999999 9999999999999965 566 67888887777 55789999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
+. +++.++++.++.++++ ..+++..+++.+++-+.++.
T Consensus 525 L~M~~~Er~~r~~~~~~~V-~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 525 LNMPEEEREKRHRHNFMHV-TTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HhCCHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHH
Confidence 98 8999999999999988 55999999999888777664
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.80 E-value=2.7e-17 Score=159.59 Aligned_cols=334 Identities=16% Similarity=0.102 Sum_probs=197.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH---hhhhhhhhhcCc-EEE--------eccch
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGV-QVI--------SAKGQ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~g~-~v~--------~~~~~ 142 (477)
.||++.+... ||..+-..++++|+++|+++.++....+.-..... +.+. .+...|+ .++ .....
T Consensus 6 ~ki~i~aGgt---sGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~-~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGEA---SGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSME-ELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCCc---cHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChH-HhhhccHHHHHHHHHHHHHHHHHH
Confidence 3576666443 44566559999999999999998855322110000 0000 0111111 000 00111
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHH
Q 011779 143 ETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
+++.+..+||+|++.......+.. ++...+ .|+++++.-....+-....+...+.++.+++.+....+.+.+
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~g-----ip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~- 155 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPG-----IKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAFYQK- 155 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCC-----CCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHHHHh-
Confidence 355567899999999843322222 233333 345543321111111222333446778888888877766542
Q ss_pred hHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEE-e-eccc-CCCHHHHHHHHHHHHH
Q 011779 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYESLE 297 (477)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~v-G-rl~~-~Kg~~~ll~a~~~l~~ 297 (477)
.| .+..++.|++..+.....+ .+...|+++|+++++++|+++ | |..+ .|+++.+++++..+.+
T Consensus 156 ----~g---~~~~~vGnPv~~~~~~~~~-------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~ 221 (385)
T TIGR00215 156 ----KN---VPCRFVGHPLLDAIPLYKP-------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ 221 (385)
T ss_pred ----cC---CCEEEECCchhhhccccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH
Confidence 22 3566788887433221101 135568889998887776655 3 6555 6899999999998866
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
..|++++++.+.+. ...+.+++..+.++...+|.+.+. +...+|++||++|.+| |.+.+|
T Consensus 222 -------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlE 281 (385)
T TIGR00215 222 -------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALE 281 (385)
T ss_pred -------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHH
Confidence 56888887765432 345666666666666566766653 6778999999999998 467779
Q ss_pred HHHcCCCEEee----cccccccc------CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH----HHHHHHHHH
Q 011779 378 AMAFQLPVLLQ----KCLYQGTA------AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV----ERRLTMGKR 443 (477)
Q Consensus 378 Ama~G~PvI~~----~~~~~~~~------~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~----~~~~~~~~~ 443 (477)
||++|+|+|.+ +.++...+ .-+.+.++.+......+-.++.+++.+++.+.++++|+ +.++++.+.
T Consensus 282 a~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~ 361 (385)
T TIGR00215 282 AALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQF 361 (385)
T ss_pred HHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99999999954 22220000 12233444333333333334445899999999999999 888888776
Q ss_pred HHHHHHHhcC
Q 011779 444 GYERVKEIFQ 453 (477)
Q Consensus 444 a~~~~~~~fs 453 (477)
..+.. +...
T Consensus 362 ~~~~~-~~l~ 370 (385)
T TIGR00215 362 FEELR-QRIY 370 (385)
T ss_pred HHHHH-HHhc
Confidence 65543 4444
No 92
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.6e-16 Score=139.28 Aligned_cols=355 Identities=16% Similarity=0.142 Sum_probs=230.9
Q ss_pred ccEEE-EEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------
Q 011779 74 SKLVL-LVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (477)
Q Consensus 74 ~~~Il-~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------- 142 (477)
+++++ +|..+. |-+-++..-|..|++.|++|.++....+.+ ..+.+....++++.....
T Consensus 12 k~ra~vvVLGDv---GRSPRMqYHA~Sla~~gf~VdliGy~~s~p-------~e~l~~hprI~ih~m~~l~~~~~~p~~~ 81 (444)
T KOG2941|consen 12 KKRAIVVVLGDV---GRSPRMQYHALSLAKLGFQVDLIGYVESIP-------LEELLNHPRIRIHGMPNLPFLQGGPRVL 81 (444)
T ss_pred cceEEEEEeccc---CCChHHHHHHHHHHHcCCeEEEEEecCCCC-------hHHHhcCCceEEEeCCCCcccCCCchhh
Confidence 34444 444444 444668888999999999999999655542 233344556666544322
Q ss_pred --------------hhHHHhcCCcEEEEcCcchhhHHHHHh-hhCCCccccceeeeeeecccc-cchh---------hHh
Q 011779 143 --------------ETINTALKADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGH-YFKL---------DYV 197 (477)
Q Consensus 143 --------------~~~~~~~~~DiV~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~-~~~~---------~~~ 197 (477)
..+.-...+|++.+++|.+...+.... .... .+.+++.++|++... .... ...
T Consensus 82 ~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l--~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~ 159 (444)
T KOG2941|consen 82 FLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSIL--TGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLV 159 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHH--hcceEEEEehhhHHHHHHHhhcCCCCchHHHH
Confidence 122234789999999866544333222 2122 226788888986432 1000 001
Q ss_pred hcc-cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCc-----hh----hhhhhhh---------hHHHHHHHH
Q 011779 198 KHL-PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS-----KE----LMEVAED---------NVAKRVLRE 258 (477)
Q Consensus 198 ~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd-----~~----~~~~~~~---------~~~~~~~~~ 258 (477)
+++ +.+......+..+.+.+++.+.+..|+. +..|++.-.. .+ .|.+... +..+..++.
T Consensus 160 ~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~t 237 (444)
T KOG2941|consen 160 RWLEKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERT 237 (444)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhh
Confidence 111 1122222333344455555555577764 3445442221 11 1222111 111222223
Q ss_pred HHHHhhC------CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 259 HVRESLG------VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 259 ~~r~~~~------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
.+-++.. .++.+.+++..-+..+..++..+++|+...-+++.+.+...|.+-.+|.|.| |..+.+.+.+
T Consensus 238 af~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y~~~I 312 (444)
T KOG2941|consen 238 AFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKYSQEI 312 (444)
T ss_pred hHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHHHHHH
Confidence 3333332 3355567777778899999999999999766666655557799999999999 8999999999
Q ss_pred HhcCCCCcEEEc-cc--cCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 333 MQKKIQDRVHFV-NK--TLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 333 ~~~~l~~~v~~~-g~--~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
+++++. +|.+. .+ .+|.+.+++.||+ ++..|.+ .=..|++++....||+||+ +-+..-+.|+|+++
T Consensus 313 ~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvc-------A~~fkcl~ELVkh~ 383 (444)
T KOG2941|consen 313 HEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVC-------AVNFKCLDELVKHG 383 (444)
T ss_pred HHhccc-ceeeeecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCcee-------eecchhHHHHHhcC
Confidence 999886 55543 44 4999999999996 4566653 5568999999999999999 99999999999999
Q ss_pred CceeeecCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 408 TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 408 ~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+||++|. | -+++++++..+.+ +.....++.+++++.. ...|+..-++..
T Consensus 384 eNGlvF~--D--s~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~--e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 384 ENGLVFE--D--SEELAEQLQMLFKNFPDNADELNQLKKNLREEQ--ELRWDESWERTA 436 (444)
T ss_pred CCceEec--c--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH--hhhHHHHHHHhh
Confidence 9999998 5 7999999999998 8888999999998864 256665554443
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.79 E-value=3.1e-17 Score=163.07 Aligned_cols=219 Identities=12% Similarity=0.134 Sum_probs=172.7
Q ss_pred hcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEe
Q 011779 198 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (477)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vG 277 (477)
..+..++.+++.+......+..++.... ...++..||.+.- ... +.... ..+..+++++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~--~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~ 326 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENY--VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFW 326 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcc--cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEE
Confidence 4456777778777666666665443211 1234667775543 211 11100 2334566778
Q ss_pred --ecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-----------------
Q 011779 278 --SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ----------------- 338 (477)
Q Consensus 278 --rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~----------------- 338 (477)
|+ ++|.++.+++++.++.+ ++|+++|.+.|.+.. ..+.+.+++.++++++.
T Consensus 327 idrL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 327 IDGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNND--NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred cCCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCc--hhHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 99 99999999999999987 789999999998742 13457777777777666
Q ss_pred ------------CcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe
Q 011779 339 ------------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV 404 (477)
Q Consensus 339 ------------~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v 404 (477)
++|.|.|... ++.+.|..+.++|.+|. .|+|+ +.+||++.|+|+| +. |..++|
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---------ny-g~~~~V 463 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---------NK-VETDYV 463 (519)
T ss_pred hcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---------ec-CCceee
Confidence 7999999886 99999999999999999 99999 9999999999999 22 457999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 405 VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 405 ~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.+++||+++ +| .++|++++..++.+++.+.++...+.+.+ +.||-+++.++|.+++
T Consensus 464 ~d~~NG~li--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~-~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 464 EHNKNGYII--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLI-DDYSSENIIERLNELI 519 (519)
T ss_pred EcCCCcEEe--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhhC
Confidence 999999999 56 99999999999999999999999999988 6699999999998753
No 94
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.77 E-value=1.2e-16 Score=160.77 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=146.7
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch---HHHHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~---~~~~~l~~~~~~~~l~~~v~ 342 (477)
++++.+++++++|+..+||+++++.++.++.+.+.+ ...+++|++.|.+.+.+. .+.+.+.+++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~---~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNN---PERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhC---CCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 457788999999999999999999999998754332 113699999999864321 25666777777655667888
Q ss_pred Ecc-ccCCHHH-HHHhcCEEEE-cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC----
Q 011779 343 FVN-KTLTVAP-YLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV---- 415 (477)
Q Consensus 343 ~~g-~~~~l~~-~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~---- 415 (477)
|+- +...++. ++++||++++ ||+. .|++|++-+-||..|.+.+ ++.-|...|.. ++.||+.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~-------sv~DG~~~E~~-~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNL-------SILDGWWGEGY-DGDNGWAIGDGEEY 532 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCcee-------ecccCcccccC-CCCcEEEECCCccc
Confidence 865 5444544 5899999999 9985 8999999999999999999 88888887876 6679999984
Q ss_pred --------CCCCHHHHHHHHHHHH-----hC-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 416 --------GKEGITPLAKNIVKLA-----TH-----VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 416 --------~d~~~~~la~~i~~ll-----~~-----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.| .++|.++|++.+ ++ |..+.+|.+++.+.....|||++++++|.+.|
T Consensus 533 ~~~~~~d~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 533 DDEEEQDRLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccccCCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997655 23 55678888888776555799999999999887
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.74 E-value=4e-18 Score=140.79 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=97.4
Q ss_pred CeEEEEEeecccCCCHHHHHH-HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 270 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~-a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
-++|+++|++.+.|+++.+++ ++.++.+ +.|+++|+|+|.++ . +++++ ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 468899999999999999999 9999877 67899999999974 2 23333 225999999998
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
++.++|+.||+++.|+.. .++++.+++|||++|+||| +++. +..+++.....|.++ .+| +++++++|.
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi-------~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~ 130 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVI-------ASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIE 130 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EE-------EEHH-HCHCHS---SEEEE--TT---HHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEE-------ECCc-chhhheeecCCeEEE-CCC--HHHHHHHHH
Confidence 999999999999999963 6799999999999999999 8888 566666555677777 666 999999999
Q ss_pred HHHhC
Q 011779 429 KLATH 433 (477)
Q Consensus 429 ~ll~~ 433 (477)
++++|
T Consensus 131 ~l~~d 135 (135)
T PF13692_consen 131 RLLND 135 (135)
T ss_dssp HHHH-
T ss_pred HHhcC
Confidence 99875
No 96
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.67 E-value=6.1e-14 Score=134.27 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=178.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec-----cc-------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG------- 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-----~~------- 141 (477)
|++|++.+... ||--.-...++++|.++||+|.+++...+-... .+...|+....+ +.
T Consensus 1 ~~~i~~~~GGT--GGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~ 70 (352)
T PRK12446 1 MKKIVFTGGGS--AGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNI 70 (352)
T ss_pred CCeEEEEcCCc--HHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHH
Confidence 34676666332 332244789999999999999999966543211 111223322111 10
Q ss_pred ------------hhhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccccchhhHhhccccccccee
Q 011779 142 ------------QETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMI 208 (477)
Q Consensus 142 ------------~~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (477)
...+.+..+||+||.+....+.. ..++...++| ..+|+.+... ....+...++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p-------~~i~e~n~~~-g~~nr~~~~~a~~v~~ 142 (352)
T PRK12446 71 KDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVP-------VLLHESDMTP-GLANKIALRFASKIFV 142 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCC-------EEEECCCCCc-cHHHHHHHHhhCEEEE
Confidence 01445678999999987544322 2233333332 2356654322 2222223344444443
Q ss_pred eehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
....... +++.+++.+..|++..+..... ++..++.+++++++++|+.+|.-. |-..+
T Consensus 143 ~f~~~~~----------~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS~---Ga~~i 200 (352)
T PRK12446 143 TFEEAAK----------HLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGSL---GAKKI 200 (352)
T ss_pred Eccchhh----------hCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCcc---chHHH
Confidence 3322111 2455678888888877653211 244566788877777776665422 33333
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-CCHHHHHHhcCEEEEcCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~l~~~~~~aDv~v~pS~~ 366 (477)
-+++.++...+. .++++++ +|.. .+.+.... . .++...++. +++.++|+.||++|.-+
T Consensus 201 n~~~~~~l~~l~------~~~~vv~~~G~~-----~~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIsr~-- 260 (352)
T PRK12446 201 NETVREALPELL------LKYQIVHLCGKG-----NLDDSLQN----K---EGYRQFEYVHGELPDILAITDFVISRA-- 260 (352)
T ss_pred HHHHHHHHHhhc------cCcEEEEEeCCc-----hHHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEECC--
Confidence 333333322211 2366554 5544 22222221 1 244556777 78999999999999443
Q ss_pred CCCcccHHHHHHHHcCCCEEeecccccccc---CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTA---AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~---~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
-+.++.|++++|+|.|..+.++ ... .-...+.+.+...|..+...+.+++.+.+++.++++|++.+++ +
T Consensus 261 ----G~~t~~E~~~~g~P~I~iP~~~-~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~ 332 (352)
T PRK12446 261 ----GSNAIFEFLTLQKPMLLIPLSK-FASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---A 332 (352)
T ss_pred ----ChhHHHHHHHcCCCEEEEcCCC-CCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---H
Confidence 4789999999999999655443 111 1122344555556777666655689999999999988876532 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+ +.+.....++++.+++.
T Consensus 333 ~-----~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 333 L-----KKYNGKEAIQTIIDHIS 350 (352)
T ss_pred H-----HHcCCCCHHHHHHHHHH
Confidence 2 22444455555555443
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=5.5e-14 Score=132.93 Aligned_cols=300 Identities=17% Similarity=0.116 Sum_probs=181.5
Q ss_pred CchhhHHHHHHHHHHhCCcE-EEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--cc----------------------
Q 011779 87 SGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KG---------------------- 141 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--~~---------------------- 141 (477)
||--.-...++++|.++|++ |.++.....-... .....++++..+ ..
T Consensus 11 GGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~--------l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T COG0707 11 GGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF--------LVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQ 82 (357)
T ss_pred ccchhHHHHHHHHHHhhCccEEEEecccccceee--------eccccCceEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence 34336688999999999995 5555332221110 111113333211 00
Q ss_pred hhhHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHH
Q 011779 142 QETINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
.+.+.+..+||+|+....... ....++...++| + .+|+... .....++...++++.+.......
T Consensus 83 a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iP-----v--~ihEqn~-~~G~ank~~~~~a~~V~~~f~~~------- 147 (357)
T COG0707 83 ARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIP-----V--IIHEQNA-VPGLANKILSKFAKKVASAFPKL------- 147 (357)
T ss_pred HHHHHHHcCCCEEEecCCccccHHHHHHHhCCCC-----E--EEEecCC-CcchhHHHhHHhhceeeeccccc-------
Confidence 135667799999999764333 223333333333 3 3666532 22222222223333333322221
Q ss_pred hHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 011779 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (477)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~ 300 (477)
.-+.+.+++.+..|++..+.+. .+. ...+.... .++++|+++|.- .|...+-+++.++...+.
T Consensus 148 ---~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~--~~~~~ilV~GGS---~Ga~~ln~~v~~~~~~l~ 210 (357)
T COG0707 148 ---EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGR--LDKKTILVTGGS---QGAKALNDLVPEALAKLA 210 (357)
T ss_pred ---cccCCCCceEEecCcccHHhhc-cch--------hhhhhhcc--CCCcEEEEECCc---chhHHHHHHHHHHHHHhh
Confidence 1234556799999999888765 222 11222222 256666666542 344444444444443222
Q ss_pred hhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH
Q 011779 301 EKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 301 ~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
.+++++. +|.+ ..++++....+++. +.+.++.+++..+|++||++|.-+ -++++.|..
T Consensus 211 ------~~~~v~~~~G~~------~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~ 269 (357)
T COG0707 211 ------NRIQVIHQTGKN------DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISRA------GALTIAELL 269 (357)
T ss_pred ------hCeEEEEEcCcc------hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHH
Confidence 1466654 4444 35666666666654 889999999999999999999443 469999999
Q ss_pred HcCCCEEeeccccccccCC--CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 380 AFQLPVLLQKCLYQGTAAG--GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 380 a~G~PvI~~~~~~~~~~~g--g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++|+|+|..|.+. +.+.- -.+..+++...|.+++..+..++.+.+.|.+++++++..++|.+++++..
T Consensus 270 a~g~P~IliP~p~-~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 270 ALGVPAILVPYPP-GADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeCCCC-CccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999999887776 43221 13455666678888887776789999999999999999999999998755
No 98
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.64 E-value=6.5e-14 Score=143.52 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH---HHHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~v~ 342 (477)
++++.++|+++.|+..+||.++++..+.++.+.+.+. ..+++|+|.|.+.+.+.+ +.+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4577789999999999999999999999987655431 135999999998654432 3445555565545667888
Q ss_pred Ecc-ccCCHH-HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC---
Q 011779 343 FVN-KTLTVA-PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK--- 417 (477)
Q Consensus 343 ~~g-~~~~l~-~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d--- 417 (477)
|+. +...++ .+++.||++++||+.-.|..|++-+-||..|.+-+ ++.-|...|.- ++.||+.+..+.
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~Lnl-------SvlDGww~E~~-~g~nGwaig~~~~~~ 622 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNL-------SVLDGWWDEGY-DGENGWAIGDGDEYE 622 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeee-------ecccCcccccc-CCCCceEeCCCcccc
Confidence 875 444444 45899999999998668999999999999999999 88888888877 788999998832
Q ss_pred -------CCHHHHHHHHHHHHh----C------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 418 -------EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 418 -------~~~~~la~~i~~ll~----~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.+.++|.+.|++-+- + |..+.+|.+++.+.+...|||++|+++|.+-|
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 236777777755333 3 66788888888887778999999999997644
No 99
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.61 E-value=5.9e-13 Score=130.62 Aligned_cols=296 Identities=17% Similarity=0.126 Sum_probs=178.0
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++.+.|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+....
T Consensus 140 ~~~D~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTH-HHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHH-HHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 4679999998655443 4455555554 57888888754322 222333334455555555555565555555
Q ss_pred HhhhccC--C-----------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 222 RERLRIK--M-----------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 222 ~~~~~~~--~-----------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
.+.+|.. . -++.+.|-|||.+.+.............+.++++++ .+..+|+.+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4454432 1 137788999999988765544333444567888876 345888899999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH----HHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHH
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~ 355 (477)
+.||+++.+..++ -..++.|+-++.......+ +..++.+++.+ +|-.+ .|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~---~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPE---YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GG---GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcC---ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 9999999986665 2355788766654332222 45555555543 33322 2555543 388999999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
.||+++.+|. .+|+-++..|+.+|..+ +| .|...|..+.+ ++..++++|.| ++++|++|.+.+
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLi-------LSefaGaa~~L--~~~al~VNP~d--~~~~A~ai~~AL 438 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLI-------LSEFAGAAEQL--SEAALLVNPWD--IEEVADAIHEAL 438 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEE-------EETTBGGGGT---TTS-EEE-TT---HHHHHHHHHHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceE-------eeccCCHHHHc--CCccEEECCCC--hHHHHHHHHHHH
Confidence 9999999999 99999999999999875 55 78888888877 33459999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+ .++.++..-+..++.+ ..++...+++.+++-++
T Consensus 439 ~M~~~Er~~r~~~~~~~v-~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 439 TMPPEERKERHARLREYV-REHDVQWWAESFLRDLK 473 (474)
T ss_dssp T--HHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-HhCCHHHHHHHHHHHhh
Confidence 9 7777777777778877 45899999998876554
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.57 E-value=5.5e-13 Score=129.56 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=146.6
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhH-HHHHHHH---H-HHHhh----CCC-CCC
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLRE---H-VRESL----GVR-NED 270 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~---~-~r~~~----~~~-~~~ 270 (477)
..++.+.++|..++.....- ++ ...-.|+|||++.+.|....+-. .+...++ + ++..+ +++ ++.
T Consensus 220 ~~AdvFTTVSeITa~Ea~~L----L~--r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~t 293 (633)
T PF05693_consen 220 HYADVFTTVSEITAKEAEHL----LK--RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKT 293 (633)
T ss_dssp HHSSEEEESSHHHHHHHHHH----HS--S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGE
T ss_pred HhcCeeeehhhhHHHHHHHH----hC--CCCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccce
Confidence 46677778888888776653 22 23347889999998765543211 1111122 2 23332 333 345
Q ss_pred eEEEEEeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCC------------------------------
Q 011779 271 LLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN------------------------------ 319 (477)
Q Consensus 271 ~~il~vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~------------------------------ 319 (477)
+.|...||... .||+|.+|+|+.+|...++..+....=+-|+|+-....
T Consensus 294 l~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~ 373 (633)
T PF05693_consen 294 LYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKR 373 (633)
T ss_dssp EEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899877 89999999999999876665211111133444433211
Q ss_pred ----------------cc----------------------------hHHHHHHHHHHHhcCCC----Cc--EEEccc---
Q 011779 320 ----------------AQ----------------------------TKFESELRNYVMQKKIQ----DR--VHFVNK--- 346 (477)
Q Consensus 320 ----------------~~----------------------------~~~~~~l~~~~~~~~l~----~~--v~~~g~--- 346 (477)
-. ....+.+...++++++. ++ |+|++.
T Consensus 374 ~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~ 453 (633)
T PF05693_consen 374 LFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLS 453 (633)
T ss_dssp HHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---
T ss_pred HHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecccc
Confidence 00 00123344444555542 22 566652
Q ss_pred ------cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-----CCcee-eec
Q 011779 347 ------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-----GTTGL-LHP 414 (477)
Q Consensus 347 ------~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-----~~~G~-l~~ 414 (477)
.-+..+++..||+.|+||+ +|+||.+.+|+.++|+|.| +|+..|....+.+ ...|. +++
T Consensus 454 ~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsI-------TTnLsGFG~~~~~~~~~~~~~GV~Vvd 524 (633)
T PF05693_consen 454 GTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSI-------TTNLSGFGCWMQEHIEDPEEYGVYVVD 524 (633)
T ss_dssp TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EE-------EETTBHHHHHHHTTS-HHGGGTEEEE-
T ss_pred CCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCcee-------eccchhHHHHHHHhhccCcCCcEEEEe
Confidence 1568899999999999999 9999999999999999999 9999987755542 23444 444
Q ss_pred CCCCCHHH----HHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 415 VGKEGITP----LAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 415 ~~d~~~~~----la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
-.+.+.++ +++.|..+.. +...+..++.++.+.. +.++|+++...|.+.|..++++.
T Consensus 525 R~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS-~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 525 RRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS-DLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG-GGGBHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhc
Confidence 44444444 5555555554 6666777777776544 78999999999999999888754
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.57 E-value=3.5e-12 Score=123.50 Aligned_cols=297 Identities=10% Similarity=0.040 Sum_probs=200.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|.-..... ...+....+. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.+..
T Consensus 122 ~~~D~VWVHDYhL~ll-p~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLPF-ASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhHH-HHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 46778888754322 222233333344444444444444444433
Q ss_pred HhhhccCC------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 222 RERLRIKM------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 222 ~~~~~~~~------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
...+|... -++.+.|-|||.+.|........ ....+.++++++ ++.+|+.+.|++.-||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 33332211 23678899999998876544322 233567777775 466888899999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcc----hHHHHHHHHHHHhc----CCCC--cEEEccc---cCCHHHHHHh
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLAA 356 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~~----~l~~--~v~~~g~---~~~l~~~~~~ 356 (477)
+||+++.+..++ -..++.|+-+...+-.+ ..++.++++++.+. |-.+ -|.++.. .+++..+|+.
T Consensus 275 ~Afe~fL~~~Pe---~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQ---HHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChh---hcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 999999885554 22457777665432222 23445555555432 3222 2455443 2778899999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCC-----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQL-----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
||+++.++. .+|+-++..|+.+|.. ++| .|...|..+.+. ..++++|.| ++++|++|.+.+
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLI-------LSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL 417 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLV-------LSQFAGAANELT---SALIVNPYD--RDEVAAALDRAL 417 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEE-------EecccchHHHhC---CCeEECCCC--HHHHHHHHHHHH
Confidence 999999999 9999999999999975 266 888888887772 479999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+ .++.+++.-+..++.+ ..++...+++.+++-+..+..
T Consensus 418 ~Mp~~Er~~R~~~l~~~v-~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 418 TMPLAERISRHAEMLDVI-VKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred cCCHHHHHHHHHHHHHHh-hhCCHHHHHHHHHHHHHHhhh
Confidence 9 6777777777777777 558999999999888877643
No 102
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.51 E-value=6.2e-14 Score=106.93 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.5
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
+++.|+. .++++..++|+||||+||| +.+.++..+++.++..++.++ | ++++.+++..+++||+.++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi-------~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~ 67 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVI-------SDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERR 67 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEE-------ECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHH
Confidence 4677888 7999999999999999999 999999999999998999988 5 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
+++++|++.++++|+|+..++++++
T Consensus 68 ~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 68 RIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 9999999999999999999998863
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.49 E-value=3.1e-11 Score=126.58 Aligned_cols=297 Identities=10% Similarity=0.053 Sum_probs=198.3
Q ss_pred cEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhHhh
Q 011779 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (477)
|+|.+|....... ..+++...|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.....+.
T Consensus 203 d~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVL-PTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHH-HHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999998655443 3444454554 47778888754332 222333333445555455555554444433333
Q ss_pred hccCC---------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 225 LRIKM---------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 225 ~~~~~---------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
+|+.. -++.+.|-|||.+.|.............++++++++- +++.+|+-+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 33321 2367889999999887654433333345677887762 3567888999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcc----hHHHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHHh
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLAA 356 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~~ 356 (477)
.||+++++..++ -..++.|+-+....... ..+..++.+++.+ +|-.+ .|+++.. .+++..+|+.
T Consensus 359 ~A~e~~L~~~P~---~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPE---WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCcc---ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 999999884333 11245676555432211 1234444455443 33222 3566543 2889999999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCC-------------------CEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-------------------PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
||+++.++. .+|+-++..|+.+|.. .+| .|...|....+. ..++++|.|
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLi-------LSEfaGaa~~L~---~Ai~VNP~d 503 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLV-------VSEFIGCSPSLS---GAIRVNPWN 503 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceE-------eeeccchhHHhC---cCeEECCCC
Confidence 999999999 9999999999999854 255 677777766552 479999999
Q ss_pred CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 418 EGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 418 ~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++|++|.+.+. .++.++..-+..++++ ..++...+++.++.-++++..
T Consensus 504 --~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 504 --IDAVADAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERTCR 554 (854)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 5566666666777777 558999999998877776643
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.48 E-value=6.6e-12 Score=122.21 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=138.2
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
....+.+++.+......+.+++ . +..++.++|-|+=.. + .... ..+..+++++.
T Consensus 237 ~~~~~~iIv~T~~q~~di~~r~----~-~~~~~~~ip~g~i~~-~--~~~~-----------------r~~~~~l~~t~- 290 (438)
T TIGR02919 237 ETRNKKIIIPNKNEYEKIKELL----D-NEYQEQISQLGYLYP-F--KKDN-----------------KYRKQALILTN- 290 (438)
T ss_pred ccccCeEEeCCHHHHHHHHHHh----C-cccCceEEEEEEEEe-e--cccc-----------------CCcccEEEECC-
Confidence 3677777777766566555533 2 245677788776522 1 0000 12234445552
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC-CHHHHHHhcC
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAID 358 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-~l~~~~~~aD 358 (477)
+..|+++.++.+ +.|+++|.| |.+. +....|.++ +++ ++.+.+.|... ++.++|..||
T Consensus 291 ------s~~I~~i~~Lv~-------~lPd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 291 ------SDQIEHLEEIVQ-------ALPDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred ------HHHHHHHHHHHH-------hCCCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhcc
Confidence 889999999988 779999999 8774 335777777 666 56777888765 9999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
+++..|. .|++++++.||+..|+|++ +.+.. |..+++.+ |.+++.++ +++++++|.+++.+++..
T Consensus 350 lyLdin~--~e~~~~al~eA~~~G~pI~-------afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~ 415 (438)
T TIGR02919 350 IYLDINH--GNEILNAVRRAFEYNLLIL-------GFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQF 415 (438)
T ss_pred EEEEccc--cccHHHHHHHHHHcCCcEE-------EEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHH
Confidence 9999999 9999999999999999999 77654 45677755 89999998 999999999999999776
Q ss_pred HHHHHHHHHHH
Q 011779 438 LTMGKRGYERV 448 (477)
Q Consensus 438 ~~~~~~a~~~~ 448 (477)
++.-..-++.+
T Consensus 416 ~~~~~~q~~~a 426 (438)
T TIGR02919 416 RELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHh
Confidence 66555444443
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.8e-10 Score=111.20 Aligned_cols=296 Identities=15% Similarity=0.124 Sum_probs=199.9
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
.+=|+|.+|.-.... +..+++..+|.. ++.+.+|...+.. +...+...+-.++.+--.+...+.-+....
T Consensus 146 ~~gDiIWVhDYhL~L-~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLLL-VPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhhh-hHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 456999999755543 345566666653 6778888654321 222233333334444444444444443333
Q ss_pred Hhhhc-------------cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 222 RERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 222 ~~~~~-------------~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
.+..+ -..-++...|-|+|...|............-.++++.++ .++.+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHH
Confidence 22221 122357788999999988776544333333566777776 447888899999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH----HHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHH
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~ 355 (477)
+.||.+++...++ -..++.|+-++..+..+-+ ++.++++.+.+ +|-.+ -|+|+.. .+++..+|.
T Consensus 301 l~Afe~lL~~~Pe---~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPE---WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChh---hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 9999999985554 2345777777765444333 34444444443 23211 3455543 277999999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
.||+++.++. .+|+-++..|+.+|-- |.| -|...|....+.+ .++++|.| .++++++|.+.+
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~Li-------LSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL 443 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLI-------LSEFAGAASELRD---ALIVNPWD--TKEVADAIKRAL 443 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEE-------Eeccccchhhhcc---CEeECCCC--hHHHHHHHHHHh
Confidence 9999999999 9999999999999854 666 7777777766633 79999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+ .++.+++.-+..++.+ ..++...+++.+++-+..
T Consensus 444 ~m~~eEr~~r~~~~~~~v-~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 444 TMSLEERKERHEKLLKQV-LTHDVARWANSFLDDLAQ 479 (486)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHh
Confidence 9 7777777667777777 457999999887766654
No 106
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.43 E-value=5.7e-11 Score=110.07 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=146.5
Q ss_pred EEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------hh
Q 011779 76 LVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QE 143 (477)
Q Consensus 76 ~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------~~ 143 (477)
||+|.+....- |.|. .+...||++|.++|++|.+++...+. .+...+...|..++.++. ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~-------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPG-------DLIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH-------HHHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 47777765444 5444 77899999999999999999976543 234456677888865543 22
Q ss_pred hHHHhcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 144 TINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
...+..+||+|++..... ..+... .+... +++ ..+.+.....+ .+|.++..+.. .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~~-~k~~~----~~l-~~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEKL-IKEFG----RKI-LVIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHH-HHHhC----CeE-EEEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 445566899999976433 333333 33222 222 22333211111 23433333332 22111
Q ss_pred hhhc-cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 223 ERLR-IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 223 ~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
..+ .+... ...-|.+.-...+...... .....+ .+.+.++++.|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~eF~~~~----~~~~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLREEFYQLA----TANKRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhHHHHHhh----Hhhhcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 111 23232 2344665443322211100 000011 023456778888777666677778777542
Q ss_pred hccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH
Q 011779 302 KKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (477)
Q Consensus 302 ~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (477)
+++++ +++|.+. +..+++++.++.. +++.+.++++++.++|+.||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~----~~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSN----PNLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCC----cCHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 23333 3777764 3456777777654 4899999999999999999999963 3689999999
Q ss_pred cCCCEE
Q 011779 381 FQLPVL 386 (477)
Q Consensus 381 ~G~PvI 386 (477)
+|+|+|
T Consensus 259 ~g~P~i 264 (279)
T TIGR03590 259 LGLPSL 264 (279)
T ss_pred cCCCEE
Confidence 999999
No 107
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=8.1e-10 Score=103.29 Aligned_cols=332 Identities=16% Similarity=0.155 Sum_probs=201.6
Q ss_pred chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--ecc---chhhHHHhcCCcEEEEcCcc
Q 011779 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAK---GQETINTALKADLIVLNTAV 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~~---~~~~~~~~~~~DiV~~~~~~ 160 (477)
|-.+.+..|.++|.++ ++.+.+-|..+... + .....+.. .+.+. |+. ..+++.+..+||++++--..
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~-e----~a~~~~~~-~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtE 133 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGA-E----RAAALFGD-SVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETE 133 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHH-H----HHHHHcCC-CeEEEecCcCchHHHHHHHHhcCCCEEEEEecc
Confidence 5458899999999998 66666655332221 1 01112211 23333 332 23567778899998775422
Q ss_pred -hhhHHHHHhhhCCCccccceeeeeeecccc-cchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC
Q 011779 161 -AGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (477)
-...+......++|.+...--.+.+..... ..+......++.++.+++.+....+.+. .+|.++ +.+.-|=
T Consensus 134 lWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GNl 206 (419)
T COG1519 134 LWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGNL 206 (419)
T ss_pred ccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecce
Confidence 222333344445543322111111111111 1223345566788889988888887766 456544 5554442
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhccCcCceEEEEEecC
Q 011779 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 317 (477)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g 317 (477)
-.+. .+ +.........+|..++.+ +.+++..+. ..|= +.++++++.+++ ++|+..+++|=.-
T Consensus 207 -Kfd~-~~---~~~~~~~~~~~r~~l~~~--r~v~iaaST---H~GEeei~l~~~~~l~~-------~~~~~llIlVPRH 269 (419)
T COG1519 207 -KFDI-EP---PPQLAAELAALRRQLGGH--RPVWVAAST---HEGEEEIILDAHQALKK-------QFPNLLLILVPRH 269 (419)
T ss_pred -eecC-CC---ChhhHHHHHHHHHhcCCC--CceEEEecC---CCchHHHHHHHHHHHHh-------hCCCceEEEecCC
Confidence 1111 11 111122356788888754 556666665 3444 448899999887 7899999999876
Q ss_pred CCcchHHHHHHHHHHHhcCCC------------C-cEEEccccCCHHHHHHhcCEEEEc-CCCCCCcccHHHHHHHHcCC
Q 011779 318 MNAQTKFESELRNYVMQKKIQ------------D-RVHFVNKTLTVAPYLAAIDVLVQN-SQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~l~------------~-~v~~~g~~~~l~~~~~~aDv~v~p-S~~~~E~~g~~~lEAma~G~ 383 (477)
+ +-...+++++++.|+. + +|.+....-++..+|..+|+.++- |. .+--|--++|+.++|+
T Consensus 270 p----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~~~ 343 (419)
T COG1519 270 P----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAFGT 343 (419)
T ss_pred h----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHcCC
Confidence 4 4567788888887762 1 222222237799999999996554 54 4455788999999999
Q ss_pred CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 384 PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
|||. +|+ ..+...+.+-+...+.|+.++ | .+.+++++..++.|++.+++|++++.+.+.++ ....+++.+
T Consensus 344 pvi~--Gp~-~~Nf~ei~~~l~~~ga~~~v~--~--~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~---~gal~r~l~ 413 (419)
T COG1519 344 PVIF--GPY-TFNFSDIAERLLQAGAGLQVE--D--ADLLAKAVELLLADEDKREAYGRAGLEFLAQN---RGALARTLE 413 (419)
T ss_pred CEEe--CCc-cccHHHHHHHHHhcCCeEEEC--C--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hHHHHHHHH
Confidence 9994 333 345555555455555677766 4 68899999988889999999999999988653 224444444
Q ss_pred HH
Q 011779 464 VL 465 (477)
Q Consensus 464 ~~ 465 (477)
.+
T Consensus 414 ~l 415 (419)
T COG1519 414 AL 415 (419)
T ss_pred Hh
Confidence 43
No 108
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.41 E-value=2e-13 Score=118.03 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=83.7
Q ss_pred EEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH-hhhhhh-hhhcCcEE---EeccchhhHHHhcC
Q 011779 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHK-MWDRGVQV---ISAKGQETINTALK 150 (477)
Q Consensus 77 Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~-~~~~g~~v---~~~~~~~~~~~~~~ 150 (477)
|+++... ...||+++++.+|+++|+++||+|++++........... ...... ........ ..........+..+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 3455544 344999999999999999999999999966554322110 000000 00000000 01111234556679
Q ss_pred CcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc-------c-c-chh----hHhhcccccccceeeehhhHHHH
Q 011779 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------H-Y-FKL----DYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------~-~-~~~----~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
||+||+|......+...... ..+++++.|+... . . ... .....++..+.+++.|..+.+.+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l 154 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDEL 154 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHH
Confidence 99999998554433332222 2578889998752 0 1 111 11222467888999998888876
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhh
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELM 244 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (477)
.+ +|+++.++.|||||+|.+.|
T Consensus 155 ~~-----~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 155 IK-----FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HH-----HT--SS-EEE----B-CCCH
T ss_pred HH-----hCCcccCCEEEECCccHHHc
Confidence 63 57888999999999999877
No 109
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.35 E-value=2.3e-10 Score=111.29 Aligned_cols=318 Identities=13% Similarity=0.033 Sum_probs=172.6
Q ss_pred Cchh-hHHHHHHHHHHh--CCcEEE---EEecCCCCChhhHHh-hhhhhhhhcCcEEEec-c--------------chhh
Q 011779 87 SGGP-LLLMELAFLLRG--VGTKVN---WITIQKPSEEDEVIY-SLEHKMWDRGVQVISA-K--------------GQET 144 (477)
Q Consensus 87 gG~~-~~~~~l~~~L~~--~G~~V~---v~~~~~~~~~~~~~~-~~~~~~~~~g~~v~~~-~--------------~~~~ 144 (477)
|-+| .....++++|.+ .|++|. ++....+........ .-...+...|+.-... . ....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~ 85 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWR 85 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 4445 778899999998 699999 665443321100000 0000001111110000 0 0013
Q ss_pred HHHhc--CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--------------chhh------Hhhcc-c
Q 011779 145 INTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLD------YVKHL-P 201 (477)
Q Consensus 145 ~~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------~~~~------~~~~~-~ 201 (477)
+.+.. +||+|++..... .+..+...++|.. ++-.|+....+ +... ..+.. +
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v--~~~aA~~~~~p~~----~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~ 159 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIV--PLLFAWLSGKPYA----FVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSR 159 (396)
T ss_pred HHHHHhhcCCEEEEECcHH--HHHHHHHcCCCce----EEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhch
Confidence 33456 999999987655 2333444455433 32334432110 0101 12222 4
Q ss_pred ccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~ 280 (477)
.++.+++......+.+.+ .| .++.++-|++-....... + .+++++.. ++++-|+-.
T Consensus 160 ~a~~v~~~~~~t~~~l~~-----~g---~k~~~vGnPv~d~l~~~~---------~------~~l~~~~~~lllLpGSR~ 216 (396)
T TIGR03492 160 RCLAVFVRDRLTARDLRR-----QG---VRASYLGNPMMDGLEPPE---------R------KPLLTGRFRIALLPGSRP 216 (396)
T ss_pred hhCEEeCCCHHHHHHHHH-----CC---CeEEEeCcCHHhcCcccc---------c------cccCCCCCEEEEECCCCH
Confidence 455555555555555442 23 267777777643322110 0 03444443 444444432
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC--------------CcEEEc
Q 011779 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVHFV 344 (477)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--------------~~v~~~ 344 (477)
. .++.+.+++++.++.+ + +++++++.-.+. ...+.+++..++.+.. +++.+.
T Consensus 217 ae~~~~lp~~l~al~~L~~-------~-~~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~ 284 (396)
T TIGR03492 217 PEAYRNLKLLLRALEALPD-------S-QPFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVL 284 (396)
T ss_pred HHHHccHHHHHHHHHHHhh-------C-CCeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEE
Confidence 2 5677899999998854 4 677777654221 2445566666654543 236666
Q ss_pred cccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc---eEEeecC----CceeeecCCC
Q 011779 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT---TEIVVNG----TTGLLHPVGK 417 (477)
Q Consensus 345 g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~---~e~v~~~----~~G~l~~~~d 417 (477)
.+..++..+|+.||++|..| |.+..|++++|+|+|. ....+. ..+.+.. ..+......+
T Consensus 285 ~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Il-------ip~~~~q~na~~~~~~~~l~g~~~~l~~~~ 350 (396)
T TIGR03492 285 LGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQ-------LPGKGPQFTYGFAEAQSRLLGGSVFLASKN 350 (396)
T ss_pred echHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEE-------EeCCCCHHHHHHHHhhHhhcCCEEecCCCC
Confidence 66788999999999999776 4566999999999994 332111 1222220 1334444444
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
++.+++++.++++|++.+++|.+++++...+....+++++.+
T Consensus 351 --~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 351 --PEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred --HHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 899999999999999998888765554443334444444443
No 110
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-09 Score=104.04 Aligned_cols=346 Identities=13% Similarity=0.106 Sum_probs=209.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----hhhH
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----QETI 145 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----~~~~ 145 (477)
..++.||.++++.+..--....+..+.+.+.+.-+||..+....+. .+. +...+...--+.++... ...-
T Consensus 256 ~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~-~da----l~~rI~a~~~~~~~~~~~dd~e~a~~ 330 (620)
T COG3914 256 NGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPH-TDA----LQERISAAVEKWYPIGRMDDAEIANA 330 (620)
T ss_pred cccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCC-chh----HHHHHHHhhhheeccCCcCHHHHHHH
Confidence 4567899999999877555577778888887777999888865332 221 22222222223333332 1233
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeee----hhhHHHHHHHh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS----HVTAEYWKNRT 221 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~ 221 (477)
+.....||.+--+.........++..+. .|+..++-+..+... .+..+.++... .....++.+.+
T Consensus 331 I~~d~IdILvDl~g~T~d~r~~v~A~Rp----APiqvswlGy~aT~g-------~p~~DY~I~D~y~vPp~ae~yysEkl 399 (620)
T COG3914 331 IRTDGIDILVDLDGHTVDTRCQVFAHRP----APIQVSWLGYPATTG-------SPNMDYFISDPYTVPPTAEEYYSEKL 399 (620)
T ss_pred HHhcCCeEEEeccCceeccchhhhhcCC----CceEEeecccccccC-------CCcceEEeeCceecCchHHHHHHHHH
Confidence 3456788776433111111112222211 234333333322111 12333333322 44445554432
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
. .++ ..+-++| .+.+... ..-|..+|++++.+++++.++ ..|-...+.+...++.+
T Consensus 400 ~---RLp-----~cy~p~d--~~~~v~p--------~~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~---- 455 (620)
T COG3914 400 W---RLP-----QCYQPVD--GFEPVTP--------PPSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS---- 455 (620)
T ss_pred H---hcc-----cccCCCC--CcccCCC--------CcchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH----
Confidence 2 111 2222333 2222211 123677999999999988776 45777778887777776
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
..|+..|++.|.|++ ....+.+++++++.|+. ++++|.+.. ++..+.|.-||+++=+. .-+-..+.+||
T Consensus 456 ---~vP~Svl~L~~~~~~--~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~da 527 (620)
T COG3914 456 ---AVPNSVLLLKAGGDD--AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTASDA 527 (620)
T ss_pred ---hCCCcEEEEecCCCc--HHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccchHHH
Confidence 679999999998733 35688999999999984 789999974 66777899999988554 45557899999
Q ss_pred HHcCCCEEee--ccccccccCCCceEEeec-CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcC
Q 011779 379 MAFQLPVLLQ--KCLYQGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQ 453 (477)
Q Consensus 379 ma~G~PvI~~--~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs 453 (477)
+-+|+|||+- ++. +++.|+. ++.. |..-++++ + .++..+.-..+-.|..++++.+..-++.... .|+
T Consensus 528 Lwm~vPVlT~~G~~F--asR~~~s--i~~~agi~e~vA~--s--~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d 599 (620)
T COG3914 528 LWMGVPVLTRVGEQF--ASRNGAS--IATNAGIPELVAD--S--RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFD 599 (620)
T ss_pred HHhcCceeeeccHHH--HHhhhHH--HHHhcCCchhhcC--C--HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccC
Confidence 9999999943 222 3344321 1111 22223333 2 5677777777777887777776665555444 699
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 011779 454 EHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (477)
.+.++++++.+|.++++..
T Consensus 600 ~~~far~le~~y~~M~~~y 618 (620)
T COG3914 600 PKAFARKLETLYWGMWSEY 618 (620)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.29 E-value=1.7e-10 Score=111.30 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=125.9
Q ss_pred HHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-
Q 011779 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 338 (477)
Q Consensus 260 ~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~- 338 (477)
.|+.+|++++.++++...++ .|=-+..++++.++.+ +.|+.+|++...+. ..++.+++.+++.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~-------~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILK-------AVPNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHH-------HSTTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 37889999999999888876 4778899999999988 77999998876543 2467888899999985
Q ss_pred CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecC
Q 011779 339 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~ 415 (477)
+++.|.+.. ++.-..|+.+|+++=+. .-+-+.+.+||+.+|+|||+-+...-+++.|. .++.. |-..++..
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~a--SiL~~lGl~ElIA~- 415 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGA--SILRALGLPELIAD- 415 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHH--HHHHHHT-GGGB-S-
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHH--HHHHHcCCchhcCC-
Confidence 789998864 44555678899999764 34457899999999999993322221222220 11111 22223333
Q ss_pred CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHH
Q 011779 416 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~ 469 (477)
| .+++.+...+|..|++.+++++++-++...+ .|+...+++.+++.|++++
T Consensus 416 -s--~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 416 -S--EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp -S--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 3 8999999999999999999999998876643 5899999999999998864
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.27 E-value=5.3e-09 Score=99.34 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=181.6
Q ss_pred EEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec------------------
Q 011779 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------ 139 (477)
Q Consensus 78 l~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~------------------ 139 (477)
++++.+. .|..+...|+++|++++-++.++....+. +...|++.+.-
T Consensus 2 ~i~AGE~---SGD~~ga~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~ 66 (373)
T PF02684_consen 2 FISAGEA---SGDLHGARLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPK 66 (373)
T ss_pred EEEeeCc---cHHHHHHHHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHH
Confidence 4444443 23588999999999998888887755432 22233333110
Q ss_pred -----cchhhHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhh
Q 011779 140 -----KGQETINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 213 (477)
+.........+||+|++-. +.....++...+...+. .++++++--.-..|-..+....-+.+|..++...+-
T Consensus 67 ~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~--~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE 144 (373)
T PF02684_consen 67 LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP--IKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFE 144 (373)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC--ceEEEEECCceeeeCccHHHHHHHHHhheeECCccc
Confidence 0112333568999998865 44444445444443321 236666554333333334444556778888888888
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEee-ccc-CCCHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS-VSR-GKGQDLFLH 290 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGr-l~~-~Kg~~~ll~ 290 (477)
.+++.+. | -++..+.|+.-... .+.. .+...++.+ +++++.+| +.-|+ -.. .+....+++
T Consensus 145 ~~~y~~~-----g---~~~~~VGHPl~d~~-~~~~-------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 145 PEFYKKH-----G---VPVTYVGHPLLDEV-KPEP-------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HHHHhcc-----C---CCeEEECCcchhhh-ccCC-------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 8877742 3 34667776653221 1111 135556666 66666544 44453 322 455688888
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
++.++.+ ++|++++++..... ...+.+++.....+....+... ..+-.+.|+.||+.+..|
T Consensus 208 aa~~l~~-------~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S------ 268 (373)
T PF02684_consen 208 AAKLLKK-------QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS------ 268 (373)
T ss_pred HHHHHHH-------hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC------
Confidence 8888877 77999999887652 2334455665555433233222 357788999999999887
Q ss_pred ccHHHHHHHHcCCCEEeeccccc----------cccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQ----------GTAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~----------~~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
|.+.+|++.+|+|.|...-.+. -.+.=|.+.++.+.+ --++-+. .+++.+++++..++.|++.++
T Consensus 269 -GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~--~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 269 -GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQED--ATPENIAAELLELLENPEKRK 345 (373)
T ss_pred -CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhccc--CCHHHHHHHHHHHhcCHHHHH
Confidence 6999999999999985310000 001113333332211 0122222 238999999999999987755
Q ss_pred HHHHHH
Q 011779 439 TMGKRG 444 (477)
Q Consensus 439 ~~~~~a 444 (477)
......
T Consensus 346 ~~~~~~ 351 (373)
T PF02684_consen 346 KQKELF 351 (373)
T ss_pred HHHHHH
Confidence 443333
No 113
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.25 E-value=1.1e-09 Score=107.96 Aligned_cols=94 Identities=17% Similarity=0.040 Sum_probs=67.4
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCcee
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGL 411 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~ 411 (477)
.++++|.+.++. ....+|..||++|. .|...++.||+++|+|+| .....+ ..+.+.....|.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~------hgG~~t~~eal~~GvP~v-------~~P~~~dQ~~~a~~~~~~G~g~ 350 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVH------HGGAGTTAAALRAGVPQL-------VVPFFGDQPFWAARVAELGAGP 350 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeee------cCCchhHHHHHHcCCCEE-------eeCCCCCcHHHHHHHHHCCCCC
Confidence 456899999996 46788999999993 334589999999999999 444433 344455556777
Q ss_pred eecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 412 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 412 l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
..+..+.+.+++.+++.++++++ .+++..+.+
T Consensus 351 ~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~~ 382 (401)
T cd03784 351 ALDPRELTAERLAAALRRLLDPP-SRRRAAALL 382 (401)
T ss_pred CCCcccCCHHHHHHHHHHHhCHH-HHHHHHHHH
Confidence 77665434899999999998853 444443333
No 114
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.21 E-value=6e-09 Score=100.51 Aligned_cols=330 Identities=15% Similarity=0.127 Sum_probs=171.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEE-----Eec--------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQV-----ISA-------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v-----~~~-------- 139 (477)
|||++++..-+-- ..+..+.++|.+. ++++.++... +-..... . ....+...|+.+ +.+
T Consensus 1 ~ki~~v~GtRpe~---iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T TIGR03568 1 KKICVVTGTRADY---GLLRPLLKALQDDPDLELQLIVTGMHLSPEYG--N-TVNEIEKDGFDIDEKIEILLDSDSNAGM 74 (365)
T ss_pred CeEEEEEecChhH---HHHHHHHHHHhcCCCCcEEEEEeCCCCChhhc--c-HHHHHHHcCCCCCCccccccCCCCCCCH
Confidence 5788888443211 3577888888874 7887776633 2211100 0 011111122211 001
Q ss_pred --------cchhhHHHhcCCcEEEEcCcchhhH--HHHHhhhCCCccccceeeeeeecccccch-hh-Hhhccccc-ccc
Q 011779 140 --------KGQETINTALKADLIVLNTAVAGKW--LDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LD-YVKHLPLV-AGA 206 (477)
Q Consensus 140 --------~~~~~~~~~~~~DiV~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~-~~~~~~~~-~~~ 206 (477)
.....+....+||+|+++....... ..++...++| + .++|.....+.. .. .+.....+ +..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IP-----v-~HveaG~rs~~~~eE~~r~~i~~la~l~ 148 (365)
T TIGR03568 75 AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIP-----I-AHIHGGEVTEGAIDESIRHAITKLSHLH 148 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCc-----E-EEEECCccCCCCchHHHHHHHHHHHhhc
Confidence 1113555678999999997432221 2233444443 2 234443211111 11 11111122 233
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC-CeEEEEEeecc--cCC
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGK 283 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~il~vGrl~--~~K 283 (477)
++.+....+.+. +.|.++.++.++.|..-......... .++.+.+++|++.+ +++++.+-+-. ...
T Consensus 149 f~~t~~~~~~L~-----~eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~ 217 (365)
T TIGR03568 149 FVATEEYRQRVI-----QMGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKES 217 (365)
T ss_pred cCCCHHHHHHHH-----HcCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccC
Confidence 334434333333 34777788888876543222211111 13567788888644 55545444432 333
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecC-CCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEE
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-MNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g-~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~ 360 (477)
..+.+.+.++.+.+ ...++ +++... .+......+.+++...+ .++|.+.+.. .++..+++.||++
T Consensus 218 ~~~~l~~li~~L~~-------~~~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~v 285 (365)
T TIGR03568 218 AEEQIKELLKALDE-------LNKNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAV 285 (365)
T ss_pred chHHHHHHHHHHHH-------hccCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEE
Confidence 34444444444433 11234 333221 11111233444444221 3589999964 8899999999999
Q ss_pred EEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 361 VQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
|-.|. |. +.||.++|+||| + .++-+|.+..|.+.+++.. | .+++.+++.++ .++..++.+
T Consensus 286 itdSS------gg-i~EA~~lg~Pvv-------~--l~~R~e~~~~g~nvl~vg~-~--~~~I~~a~~~~-~~~~~~~~~ 345 (365)
T TIGR03568 286 IGNSS------SG-IIEAPSFGVPTI-------N--IGTRQKGRLRADSVIDVDP-D--KEEIVKAIEKL-LDPAFKKSL 345 (365)
T ss_pred EEcCh------hH-HHhhhhcCCCEE-------e--ecCCchhhhhcCeEEEeCC-C--HHHHHHHHHHH-hChHHHHHH
Confidence 96653 23 389999999999 3 3456777777778777743 4 89999999995 454433332
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
.....-|...+.++++.++
T Consensus 346 -----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 346 -----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred -----hhCCCCCCCChHHHHHHHh
Confidence 1122346666666666554
No 115
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.19 E-value=3.6e-10 Score=107.75 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
+.+.+++++|..... .++++++++ ++..++++|.+. .+ ...+||.+.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~-------~~--------~~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNA-------AD--------PRPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCc-------cc--------ccCCCEEEeecC
Confidence 456788888876544 556666654 778999997751 00 014799999987
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
.++.++|+.||++|...- -.++.||+++|+|+|+.+.+. ..+.....+.++....|...+..+.+++.+.++
T Consensus 241 ~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~P~l~ip~~~-~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~ 313 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKGG------YTTISEALALGKPALVIPRPG-QDEQEYNARKLEELGLGIVLSQEDLTPERLAEF 313 (318)
T ss_pred hHHHHHHHHhCCEEEECCC------HHHHHHHHHcCCCEEEEeCCC-CchHHHHHHHHHHCCCeEEcccccCCHHHHHHH
Confidence 899999999999995442 346999999999999433221 112222233444555677766655557888888
Q ss_pred HHHH
Q 011779 427 IVKL 430 (477)
Q Consensus 427 i~~l 430 (477)
|+++
T Consensus 314 l~~~ 317 (318)
T PF13528_consen 314 LERL 317 (318)
T ss_pred HhcC
Confidence 8753
No 116
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=2.6e-08 Score=92.33 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=180.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh--hhhhhhcCc-EEEe-c----cchh--
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--EHKMWDRGV-QVIS-A----KGQE-- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~g~-~v~~-~----~~~~-- 143 (477)
+++|.+++.+.+ |..+-..|.++|+++=-+|.++....+.-.......+ ..++...|+ .+++ + +..+
T Consensus 1 ~~ki~i~AGE~S---GDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEAS---GDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccc---hhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 468888886663 2467788999998763377777644332111000000 000111111 0000 0 0011
Q ss_pred -hHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 144 -TINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 144 -~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+.....+||++++-. +.....+...++...|. .++++++--....|...+.....+.+|.+.+.-.+-..++.+
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~--i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~k-- 153 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPK--IKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYDK-- 153 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCC--CCeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHHHHh--
Confidence 222358999998866 44444445445544443 345444443322233333445557888888888888887664
Q ss_pred HhhhccCCCCeEEEecCCchhh-hhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEee-ccc-CCCHHHHHHHHHHHHH
Q 011779 222 RERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS-VSR-GKGQDLFLHSFYESLE 297 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGr-l~~-~Kg~~~ll~a~~~l~~ 297 (477)
+|.+ ++.|.++.-.+. +.+ .++..|+++|++.+..++ +.-|+ -+. .+-...+.+++.++.+
T Consensus 154 ---~g~~---~~yVGHpl~d~i~~~~---------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 154 ---FGLP---CTYVGHPLADEIPLLP---------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred ---cCCC---eEEeCChhhhhccccc---------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3433 556655543222 211 257799999998777554 34453 222 3445566666666655
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
++|+.++++--.. +..+.++....+ ......+++.+ .+-.+.|.+||+.+..| |.+.+
T Consensus 219 -------~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 219 -------RYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred -------hCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHHH
Confidence 7799999998776 333334333332 22212233333 45678999999999877 68999
Q ss_pred HHHHcCCCEEeeccccc----------cccCCCceEEeecCCc--eeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQ----------GTAAGGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~----------~~~~gg~~e~v~~~~~--G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
|+|.+|+|.|.+.-..- -...-+.+.++.+... -++-. +..++.+++++..++.|...++++.+..
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~--~~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQE--DCTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhh--hcCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 99999999995400000 0111233333322110 01111 1228999999999999986666665554
Q ss_pred HH
Q 011779 445 YE 446 (477)
Q Consensus 445 ~~ 446 (477)
.+
T Consensus 356 ~~ 357 (381)
T COG0763 356 RE 357 (381)
T ss_pred HH
Confidence 43
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.14 E-value=1.1e-08 Score=95.77 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=159.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~------------ 142 (477)
|||++-....+ --.+...+++.|.++||+|.|.+...+. ....+...|+....+...
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 56766553321 1267889999999999999999977653 344445556655433211
Q ss_pred ------hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHH
Q 011779 143 ------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 143 ------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (477)
..+.+..+||++++..+......+ ...++ |.+....+-+... ..+-.++.++.+++........
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~~va--~~lgi-----P~I~f~D~e~a~~---~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAARVA--FGLGI-----PSIVFNDTEHAIA---QNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHHHHH--HHhCC-----CeEEEecCchhhc---cceeehhcCCeeECCcccCHHH
Confidence 133345799999987654443223 33333 3333333321111 1223345666666665555444
Q ss_pred HHHHhHhhhccCCCCeEEE-ecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC-----CH-HHHH
Q 011779 217 WKNRTRERLRIKMPDTYVV-HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK-----GQ-DLFL 289 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi-~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K-----g~-~~ll 289 (477)
+. .+|.+ -.+. +||++...+-....+ ..++.+++|+++++++++ |..+.+ |- +.+-
T Consensus 140 ~~-----~~G~~---~~i~~y~G~~E~ayl~~F~P------d~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~~i~~ 202 (335)
T PF04007_consen 140 LK-----RFGAK---NQIRTYNGYKELAYLHPFKP------DPEVLKELGLDDEPYIVV---RPEAWKASYDNGKKSILP 202 (335)
T ss_pred HH-----hcCCc---CCEEEECCeeeEEeecCCCC------ChhHHHHcCCCCCCEEEE---EeccccCeeecCccchHH
Confidence 33 44533 2344 788775332211111 256788899876665553 444422 22 2233
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.++++.+ ..+. ++++.... +. ....+++ ++.+....-+..+++..||++| .+
T Consensus 203 ~ii~~L~~--------~~~~-vV~ipr~~----~~----~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~I------g~ 255 (335)
T PF04007_consen 203 EIIEELEK--------YGRN-VVIIPRYE----DQ----RELFEKY----GVIIPPEPVDGLDLLYYADLVI------GG 255 (335)
T ss_pred HHHHHHHh--------hCce-EEEecCCc----ch----hhHHhcc----CccccCCCCCHHHHHHhcCEEE------eC
Confidence 44444433 1333 55665441 11 1223333 2555555556778999999999 44
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
| |....||...|+|.| .+-.| +..+.+ -+.|+++...| ++++.+.+.+..
T Consensus 256 g-gTMa~EAA~LGtPaI-------s~~~g~~~~vd~~L--~~~Gll~~~~~--~~ei~~~v~~~~ 308 (335)
T PF04007_consen 256 G-GTMAREAALLGTPAI-------SCFPGKLLAVDKYL--IEKGLLYHSTD--PDEIVEYVRKNL 308 (335)
T ss_pred C-cHHHHHHHHhCCCEE-------EecCCcchhHHHHH--HHCCCeEecCC--HHHHHHHHHHhh
Confidence 3 588999999999999 65433 333333 24688999888 898888666544
No 118
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.05 E-value=1.8e-08 Score=99.00 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=79.8
Q ss_pred CCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
++++|.+.+++.. ..+|..||++|..+- ..+++||+++|+|+|+.+. ..+...+.+.+.+...|..++..
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~---~~dq~~~a~~l~~~g~g~~l~~~ 342 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQ---GADQPMTARRIAELGLGRHLPPE 342 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCC---cccHHHHHHHHHHCCCEEEeccc
Confidence 4578999998754 588999999996543 3589999999999993111 11222223344455577777655
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+.+.++++++|.+++.|++.++++.+- ++.+...-..+..++.+++++
T Consensus 343 ~~~~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 343 EVTAEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 545799999999999998876666443 334445456777776666554
No 119
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=3.7e-07 Score=85.05 Aligned_cols=335 Identities=19% Similarity=0.187 Sum_probs=190.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCC-cEEEEEe-cCCCCChhhHHhhhhhhhhhcCcE-------EE-----
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQ-------VI----- 137 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~-~~~~~~~~~~~~~~~~~~~~~g~~-------v~----- 137 (477)
|.+|||+++...-+- -.-+..+.+++.+.+ .+..|+. .++-.++- ....+...++. +.
T Consensus 1 m~~~Kv~~I~GTRPE---~iKmapli~~~~~~~~~~~~vi~TGQH~d~em-----~~~~le~~~i~~pdy~L~i~~~~~t 72 (383)
T COG0381 1 MKMLKVLTIFGTRPE---AIKMAPLVKALEKDPDFELIVIHTGQHRDYEM-----LDQVLELFGIRKPDYDLNIMKPGQT 72 (383)
T ss_pred CCceEEEEEEecCHH---HHHHhHHHHHHHhCCCCceEEEEecccccHHH-----HHHHHHHhCCCCCCcchhccccCCC
Confidence 568899998843211 045778899999887 7766555 33332111 11111222222 11
Q ss_pred -------eccchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccc-----cchhhHhhcc--c
Q 011779 138 -------SAKGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLDYVKHL--P 201 (477)
Q Consensus 138 -------~~~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~-----~~~~~~~~~~--~ 201 (477)
-+.....+....+||+|.+|.-....+. .+++..++| + .|--.+. +++....+.+ .
T Consensus 73 l~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip-----V---~HvEAGlRt~~~~~PEE~NR~l~~~ 144 (383)
T COG0381 73 LGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP-----V---GHVEAGLRTGDLYFPEEINRRLTSH 144 (383)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc-----e---EEEecccccCCCCCcHHHHHHHHHH
Confidence 0112246667899999999973332222 233333333 2 3332221 1232222222 1
Q ss_pred ccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHh-hCCCCCCeEEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~il~vGrl~ 280 (477)
-.+..++.+....+.+. +-|++.+++.++.|.+-....... .... ........ ++...++++++..=|-.
T Consensus 145 ~S~~hfapte~ar~nLl-----~EG~~~~~IfvtGnt~iDal~~~~-~~~~---~~~~~~~~~~~~~~~~~iLvT~HRre 215 (383)
T COG0381 145 LSDLHFAPTEIARKNLL-----REGVPEKRIFVTGNTVIDALLNTR-DRVL---EDSKILAKGLDDKDKKYILVTAHRRE 215 (383)
T ss_pred hhhhhcCChHHHHHHHH-----HcCCCccceEEeCChHHHHHHHHH-hhhc---cchhhHHhhhccccCcEEEEEcchhh
Confidence 22223344444444433 558899999999987533222111 1000 01111222 45444556666665544
Q ss_pred c-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH-HhcCCCCcEEEcccc--CCHHHHHHh
Q 011779 281 R-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAA 356 (477)
Q Consensus 281 ~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~v~~~g~~--~~l~~~~~~ 356 (477)
. .+++..+++++.++.+ +++++.++.--.. +..+++.. ..++-.++|++..+. .+...++..
T Consensus 216 N~~~~~~~i~~al~~i~~-------~~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~ 281 (383)
T COG0381 216 NVGEPLEEICEALREIAE-------EYPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKN 281 (383)
T ss_pred cccccHHHHHHHHHHHHH-------hCCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHh
Confidence 4 3888889999988877 5577776654432 13333333 445555678888765 677888888
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
|-+.+--| |...=||-..|+||+ +-+. ..-+|.+..| +-.++.. | .+.+.+++..++++++
T Consensus 282 a~~iltDS-------GgiqEEAp~lg~Pvl-------~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 282 AFLILTDS-------GGIQEEAPSLGKPVL-------VLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEE 343 (383)
T ss_pred ceEEEecC-------CchhhhHHhcCCcEE-------eeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChH
Confidence 87666444 456789999999999 5443 4457766443 3344444 3 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.+++|+... ..|.-.+..+++.+++..-
T Consensus 344 ~~~~m~~~~-----npYgdg~as~rIv~~l~~~ 371 (383)
T COG0381 344 FYERMSNAK-----NPYGDGNASERIVEILLNY 371 (383)
T ss_pred HHHHHhccc-----CCCcCcchHHHHHHHHHHH
Confidence 998886543 4466555666666666544
No 120
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.00 E-value=7.1e-10 Score=93.89 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=72.5
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------------hhHH--Hhc
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------------ETIN--TAL 149 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------------~~~~--~~~ 149 (477)
||+++++.+++++|.++||+|++++...+.... .....++.+..++.. ..+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD--------EEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc--------ccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 799999999999999999999999966554311 122345555432111 2233 557
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---ch-----hhHhhcccccccceeeehhhHHHHHHHh
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-----LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+||+||+|++.... +....+.. ...+++.++|+..... +. ......+..++.+++.|....+.+.+
T Consensus 73 ~~Dvv~~~~~~~~~-~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-- 146 (160)
T PF13579_consen 73 RPDVVHAHSPTAGL-VAALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR-- 146 (160)
T ss_dssp --SEEEEEHHHHHH-HHHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH--
T ss_pred CCeEEEecccchhH-HHHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH--
Confidence 99999999854332 22222211 2267889999853221 11 12234567888889888888877663
Q ss_pred HhhhccCCCCeEEEecC
Q 011779 222 RERLRIKMPDTYVVHLG 238 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ng 238 (477)
+|.+.+|+.|||||
T Consensus 147 ---~g~~~~ri~vipnG 160 (160)
T PF13579_consen 147 ---YGVPPDRIHVIPNG 160 (160)
T ss_dssp ---H---GGGEEE----
T ss_pred ---hCCCCCcEEEeCcC
Confidence 57888999999998
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.98 E-value=4.2e-07 Score=90.28 Aligned_cols=318 Identities=10% Similarity=0.045 Sum_probs=179.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe---------------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------- 138 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~--------------- 138 (477)
..+|.+++.+.+ |..+..+|+++|+++.-++.+.....+. +...|++.+.
T Consensus 226 ~~kIfI~AGE~S---GDlhgA~Li~aLk~~~P~i~~~GvGG~~------------M~aaG~e~l~d~~eLsVmG~~EVL~ 290 (608)
T PRK01021 226 NTSCFISAGEHS---GDTLGGNLLKEIKALYPDIHCFGVGGPQ------------MRAEGFHPLFNMEEFQVSGFWEVLL 290 (608)
T ss_pred CCeEEEEecccc---HHHHHHHHHHHHHhcCCCcEEEEEccHH------------HHhCcCcccCChHHhhhhhHHHHHH
Confidence 347888886652 3578889999999987777777644332 2222333211
Q ss_pred -c-------cchhhHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 139 -A-------KGQETINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 139 -~-------~~~~~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
+ +...+.....+||++++-+ |.....++...+... +..|+++++--....|-..+....-+.+|..++.
T Consensus 291 ~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~G--i~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~I 368 (608)
T PRK01021 291 ALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRG--YKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLLI 368 (608)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECccceeeCcchHHHHHHHhhhheec
Confidence 0 0112333457999999865 444444444443321 1125665555433333334445555778889998
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEee-ccc-CCCHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINS-VSR-GKGQD 286 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGr-l~~-~Kg~~ 286 (477)
..+-.+++++ .| -++..+.|+.-.. ..... .+++.|+++|++++.. +-+.-|+ -.. .+..+
T Consensus 369 fPFE~~~y~~-----~g---v~v~yVGHPL~d~-i~~~~-------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 369 LPFEQNLFKD-----SP---LRTVYLGHPLVET-ISSFS-------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred CccCHHHHHh-----cC---CCeEEECCcHHhh-cccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 8888888764 23 3356666664222 11111 1456788999975654 4445553 222 45667
Q ss_pred HHHHHHH--HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFY--ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~--~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+++|++ .+. ++.++++..... .+.+.+++..++.++ -.+.+... ++-.++|++||+.+..|
T Consensus 433 v~l~aa~~~~l~----------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~-~~~~~~m~aaD~aLaaS 496 (608)
T PRK01021 433 IQVQAFLASSLA----------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPS-QFRYELMRECDCALAKC 496 (608)
T ss_pred HHHHHHHHHHhc----------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecC-cchHHHHHhcCeeeecC
Confidence 7888876 332 357787754431 235666666654331 02233321 12478999999999887
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeecccccc------------ccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQG------------TAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~------------~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~l 430 (477)
|.+.+|++.+|+|.|...-..-. .+.=+.+.++.+.+ --++-...|.+++.+++++ ++
T Consensus 497 -------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~l 568 (608)
T PRK01021 497 -------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DI 568 (608)
T ss_pred -------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HH
Confidence 69999999999999953100000 01112222222111 1122101233489999996 88
Q ss_pred HhCHHHHHHHHHHHHHHH
Q 011779 431 ATHVERRLTMGKRGYERV 448 (477)
Q Consensus 431 l~~~~~~~~~~~~a~~~~ 448 (477)
+.|++.++++.+...+.-
T Consensus 569 L~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 569 LKTSQSKEKQKDACRDLY 586 (608)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 889888887776665533
No 122
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=6.9e-07 Score=78.79 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=159.6
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
|+|+|++....- |+|. .+...||++|.++|..+..++.+.... .+.. ...++.+.-.+... .++..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~------~~~~--~~~~f~~~~~~~~n-~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA------IIHK--VYEGFKVLEGRGNN-LIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh------hhhh--hhhhccceeeeccc-ccccccCC
Confidence 789999976544 5555 778999999999999998888554221 1111 12233332222222 56778999
Q ss_pred EEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCe
Q 011779 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (477)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i 232 (477)
++++.+.....-....++... ..+++. +.+.....+. ..+.++ +...+ -.+.++.-+.+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~e~---~~k~l~-fDd~~~~~~~--------d~d~iv-------N~~~~-a~~~y~~v~~k~ 131 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKEEA---GSKILI-FDDENAKSFK--------DNDLIV-------NAILN-ANDYYGLVPNKT 131 (318)
T ss_pred EEEEeccCCCHHHHHHHHHHh---CCcEEE-ecCCCccchh--------hhHhhh-------hhhhc-chhhccccCcce
Confidence 999987444332222233111 123322 2222111111 111111 11111 111334444433
Q ss_pred EEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE
Q 011779 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312 (477)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ 312 (477)
-++-|.+.-..++... ..+++.+++ +-+-+++..|. ...||+ .+++++.+.+ .++.+.
T Consensus 132 -~~~lGp~y~~lr~eF~-----~~r~~~~~r----~~r~ilI~lGG-sDpk~l--t~kvl~~L~~---------~~~nl~ 189 (318)
T COG3980 132 -RYYLGPGYAPLRPEFY-----ALREENTER----PKRDILITLGG-SDPKNL--TLKVLAELEQ---------KNVNLH 189 (318)
T ss_pred -EEEecCCceeccHHHH-----HhHHHHhhc----chheEEEEccC-CChhhh--HHHHHHHhhc---------cCeeEE
Confidence 3444655544333221 113333333 22324445554 345654 5677776644 334443
Q ss_pred -EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccc
Q 011779 313 -IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391 (477)
Q Consensus 313 -ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~ 391 (477)
++|++. |....+++.++++ +++.+.-..++++++|..||+.+... |.++.||...|+|.++- +.
T Consensus 190 iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l-~~ 254 (318)
T COG3980 190 IVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVL-PL 254 (318)
T ss_pred EEecCCC----cchhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEE-ee
Confidence 456553 4566677777766 68889888899999999999988543 68999999999994310 00
Q ss_pred cccccCCCceEEeecCCceeeecCC--CCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 392 YQGTAAGGTTEIVVNGTTGLLHPVG--KEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 392 ~~~~~~gg~~e~v~~~~~G~l~~~~--d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
+.+.-....... ..|.....+ . ..+.....+.++..|+..|+.+....
T Consensus 255 --a~NQ~~~a~~f~--~lg~~~~l~~~l-~~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 255 --AENQIATAKEFE--ALGIIKQLGYHL-KDLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred --eccHHHHHHHHH--hcCchhhccCCC-chHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 222222222221 122222221 1 14677788888888888777665433
No 123
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.81 E-value=4.6e-07 Score=86.29 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=57.0
Q ss_pred CCcEEEcccc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE------EeecCCce
Q 011779 338 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE------IVVNGTTG 410 (477)
Q Consensus 338 ~~~v~~~g~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e------~v~~~~~G 410 (477)
++++.+.++. +++.++|+.||++|..+- ..++.||+++|+|+| .....+..| .+.+.+.|
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l-------~ip~~~~~eQ~~na~~l~~~g~~ 294 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLI-------VIPDLGQFEQGNNAVKLEDLGCG 294 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEE-------EEcCCCcccHHHHHHHHHHCCCE
Confidence 4689999987 589999999999996553 357999999999999 555444323 35555678
Q ss_pred eeecCCCCCHHHHHHHHHHHHhC
Q 011779 411 LLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 411 ~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
...+..+ . ++.+++...+.+
T Consensus 295 ~~l~~~~--~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 295 IALEYKE--L-RLLEAILDIRNM 314 (321)
T ss_pred EEcChhh--H-HHHHHHHhcccc
Confidence 7777665 4 455555554444
No 124
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.75 E-value=2e-07 Score=79.05 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=95.4
Q ss_pred ccEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh-------
Q 011779 74 SKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE------- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~------- 143 (477)
|++|+++..---| ||-|+++.+|+..|.++||+|+|.|........ .....|++++.++..+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeCCCCCCchHHH
Confidence 5789999876433 999999999999999999999999965443211 2223466664432211
Q ss_pred ---------hH--HH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--chh--------hHhhcc
Q 011779 144 ---------TI--NT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FKL--------DYVKHL 200 (477)
Q Consensus 144 ---------~~--~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--~~~--------~~~~~~ 200 (477)
.+ .+ ..+.|+|+++....+.++....+. ++..+.+++...|+..... |.. ..+...
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~av 151 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAV 151 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 11 125789999876533332222221 2222346777777754222 111 122233
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd 240 (477)
+..+.++++|..+.+++.++ |+ ..++.+|++|.|
T Consensus 152 k~ad~lIaDs~~I~~y~~~~----y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKER----YG--RKKSTFIAYGAD 185 (185)
T ss_pred HhCCEEEEcCHHHHHHHHHH----cC--CCCcEEecCCCC
Confidence 68888999999999998874 44 467899999976
No 125
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.69 E-value=3.7e-06 Score=82.08 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=101.1
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.+++.+..|..... ..+++.+-+... .-+.++++...+. +. ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~--------~l~~~vi~~~~~~------~~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALA--------DLDVRVIVSLGGA------RD------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHh--------cCCcEEEEecccc------cc------ccccCCCceEEecCCC
Confidence 34555556665543 334444333322 1467777766431 00 1225678898888863
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
...++..||++|...- -.++.||+.+|+|+|+.+. ..|.....+.+++-..|...+......+.++++|.
T Consensus 294 -~~~~l~~ad~vI~hGG------~gtt~eaL~~gvP~vv~P~---~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~ 363 (406)
T COG1819 294 -QLELLPRADAVIHHGG------AGTTSEALYAGVPLVVIPD---GADQPLNAERVEELGAGIALPFEELTEERLRAAVN 363 (406)
T ss_pred -HHHHhhhcCEEEecCC------cchHHHHHHcCCCEEEecC---CcchhHHHHHHHHcCCceecCcccCCHHHHHHHHH
Confidence 3459999999996543 4689999999999993221 12333345566666788888854444999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 429 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 429 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++.|+..++...+.. +.+.+.-..+.+++.++++.
T Consensus 364 ~vL~~~~~~~~~~~~~-~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 364 EVLADDSYRRAAERLA-EEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred HHhcCHHHHHHHHHHH-HHhhhcccHHHHHHHHHHHH
Confidence 9999988766654433 33434445444555444443
No 126
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.67 E-value=6.7e-06 Score=80.04 Aligned_cols=335 Identities=15% Similarity=0.188 Sum_probs=159.1
Q ss_pred CccEEEEEeccC-CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
++++|+|.+... ..++-.+.+.+... -...++++.+++..... .....+..++.....+.+....+.
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~~~~A 79 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKSP-----------ELKPKGIKVVKFGSLKHIYYLARA 79 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGGG---------------SS-EEEETTSHHHHHHHHHE
T ss_pred cCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCchH-----------hhccCCceEEeecHHHHHHHHHhC
Confidence 456677777532 22444454444333 12455788888754321 334557788888888877777888
Q ss_pred cEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh----------hHhhcccccccceeeehhhHHHHHHHh
Q 011779 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----------DYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+++++++........ .. ....+++..+|+..--.... .........+.+++.|....+.+.+
T Consensus 80 k~~i~~~~~~~~~~~--~~----~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~-- 151 (369)
T PF04464_consen 80 KYIISDSYFPDLIYF--KK----RKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK-- 151 (369)
T ss_dssp EEEEESS---T--TS---------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH--
T ss_pred cEEEECCCCCccccc--cc----CCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH--
Confidence 999988533221100 00 12256788888862111111 2333456777788887777766554
Q ss_pred HhhhccCCCCeEEEecCCchh--hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH------HHHHHHHH
Q 011779 222 RERLRIKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ------DLFLHSFY 293 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~------~~ll~a~~ 293 (477)
.++.+..++.+ .|..-. .+..... .++.+++.++++.++.+|+++-........ ...++ +.
T Consensus 152 --~f~~~~~~i~~--~G~PR~D~l~~~~~~------~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~ 220 (369)
T PF04464_consen 152 --AFGYPEDKILV--TGYPRNDYLFNKSKE------NRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FE 220 (369)
T ss_dssp --HTT--GGGEEE--S--GGGHHHHHSTT-------HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HH
T ss_pred --HhccCcceEEE--eCCCeEhHHhccCHH------HHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HH
Confidence 56666665554 554322 2222211 156788899999999999998654332221 12222 22
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
++. .+ ..+++.+++-.- |......... ....++|.+.....++.+++..||++|-= ++-
T Consensus 221 ~l~-~~-----~~~~~~li~k~H------p~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySS 279 (369)
T PF04464_consen 221 KLN-FL-----LKNNYVLIIKPH------PNMKKKFKDF--KEDNSNIIFVSDNEDIYDLLAAADILITD-------YSS 279 (369)
T ss_dssp HHH-HH-----HTTTEEEEE--S------HHHHTT------TT-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-T
T ss_pred HHH-HH-----hCCCcEEEEEeC------chhhhchhhh--hccCCcEEECCCCCCHHHHHHhcCEEEEe-------chh
Confidence 221 11 226788887665 2222111111 33346888888778999999999999932 346
Q ss_pred HHHHHHHcCCCEEeeccccc--cccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 011779 374 ITIEAMAFQLPVLLQKCLYQ--GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~~~~--~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 451 (477)
++.|++.+++|||....-.. ....|...+ ..+...|-.+. + .++|.++|...+.++...++..+..++..-.
T Consensus 280 i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~--~--~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~- 353 (369)
T PF04464_consen 280 IIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY--N--FEELIEAIENIIENPDEYKEKREKFRDKFFK- 353 (369)
T ss_dssp HHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES--S--HHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-
T ss_pred HHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC--C--HHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-
Confidence 89999999999993210000 001122223 11223344443 3 8999999999887665443333333332211
Q ss_pred cCHHHHHHHHHHHH
Q 011779 452 FQEHHMAERIAVVL 465 (477)
Q Consensus 452 fs~~~~~~~~~~~~ 465 (477)
|.-.+.++++.+.+
T Consensus 354 ~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 354 YNDGNSSERIVNYI 367 (369)
T ss_dssp T--S-HHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 33345555555443
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=2.4e-06 Score=79.02 Aligned_cols=326 Identities=13% Similarity=0.044 Sum_probs=182.9
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Eeccc----hhhHHHhcCCcEEEEcCcc-
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG----QETINTALKADLIVLNTAV- 160 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~~----~~~~~~~~~~DiV~~~~~~- 160 (477)
+|...+..-+.++|...||+|..+-+....... ........+... +.-.. .....+.+++|+|++-...
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 555577888999999999999999865432110 000111122222 11111 1345567899999886522
Q ss_pred -----hhhHHHHHhhhCCCccccceeeeeeeccccc-----c-hhhH-hhcccccccceeeehhhHHHHHHHhHhhhccC
Q 011779 161 -----AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----F-KLDY-VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (477)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----~-~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (477)
....+..+.+. ...+++++.-+..... . .... ++.+-..+.++..+... ....+.+. .-
T Consensus 89 ~~~~~~~~~~~a~l~~----~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l---~~~~yyq~--~~ 159 (373)
T COG4641 89 QPDEESTIDLWAWLKR----KCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGL---VANKYYQE--GG 159 (373)
T ss_pred cccceehHHHHHHhhc----CCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchH---HHHHHHHh--hc
Confidence 11111222221 1134334333321111 1 1111 11111222222222222 11211111 12
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
..+...++.++|.+.|.+.+... .-.--+.++|+-.+. .++.+-+.+.+-... ..-+
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~k------l~v~ 216 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFK------LMVD 216 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchh------hhcc
Confidence 35688999999999888765321 122357778876654 222222222221110 0012
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCC-Cc---ccHHHHHHHHc
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWG-EC---FGRITIEAMAF 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~-E~---~g~~~lEAma~ 381 (477)
-++.+.|... -..+... .-.+++...|+. ..+..+++..|+.+.-++... ++ +.+-+.|+|+|
T Consensus 217 rr~~~~g~~y------~~~~~~~----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 217 RRFYVLGPRY------PDDIWGR----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred ceeeecCCcc------chhhhcc----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 4556666541 1111111 012345555542 667888888888775544211 22 25779999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.|.+ +....++...+.+|+.=++.. | ..++.+++..++..++.++++++.+.+.+...|+-+.-+..+
T Consensus 287 ~~~li-------T~~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~ 355 (373)
T COG4641 287 GGFLI-------TDYWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKL 355 (373)
T ss_pred CCccc-------cccHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHH
Confidence 99999 888888888888876544443 5 799999999999999999999999999999999999888888
Q ss_pred HHHHHHHHh
Q 011779 462 AVVLKEVLK 470 (477)
Q Consensus 462 ~~~~~~~~~ 470 (477)
.+....+..
T Consensus 356 ~~~i~sI~~ 364 (373)
T COG4641 356 LNEIASINI 364 (373)
T ss_pred HHHHHHHHH
Confidence 877776543
No 128
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.57 E-value=4.6e-06 Score=79.04 Aligned_cols=249 Identities=16% Similarity=0.088 Sum_probs=130.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCc-EEEe-ccch-----hhHH
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVIS-AKGQ-----ETIN 146 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~-~~~~-----~~~~ 146 (477)
+|+|++++.+.+ |..+...|+++|++ ++.++....+.- ....+.+. .+.-.|+ .+++ ++.. +...
T Consensus 1 ~~~i~i~aGE~S---GD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEPS---ANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEecccc---HHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468988886652 35788899999987 555554333221 10000000 0000110 0000 0000 0111
Q ss_pred HhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhh
Q 011779 147 TALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (477)
Q Consensus 147 ~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (477)
...+||++++-. +.....++...+...|. .|+++++--.-..|-..+.....+.+|.+.+...+-.+++
T Consensus 73 ~~~~pd~~i~iD~p~Fnl~lak~~k~~~~~--i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~~y-------- 142 (347)
T PRK14089 73 LAKQADKVLLMDSSSFNIPLAKKIKKAYPK--KEIIYYILPQVWAWKKGRAKILEKYCDFLASILPFEVQFY-------- 142 (347)
T ss_pred HhcCCCEEEEeCCCCCCHHHHHHHHhcCCC--CCEEEEECccceeeCcchHHHHHHHHhhhhccCCCCHHHh--------
Confidence 236999998865 44455555555544322 4566655543333333344445566666666554434332
Q ss_pred ccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhhc
Q 011779 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
| .++.++.|++-.. .... +.. +++++.+.++-|+-.. .+....+++++.++.+
T Consensus 143 g---~~~~~VGhPl~d~-~~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~------ 197 (347)
T PRK14089 143 Q---SKATYVGHPLLDE-IKEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG------ 197 (347)
T ss_pred C---CCCEEECCcHHHh-hhhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh------
Confidence 2 3456777765322 1110 011 2234455555554221 3444556677776654
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
+ ..++++.|.. . .+.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++.+|+
T Consensus 198 -~--~~~~~i~~a~-----~-~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~ 255 (347)
T PRK14089 198 -K--EKILVVPSFF-----K-GKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGT 255 (347)
T ss_pred -c--CcEEEEeCCC-----c-HHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCC
Confidence 2 2677887765 2 25555555432 2344443 6678999999999777 578889999999
Q ss_pred CEEe
Q 011779 384 PVLL 387 (477)
Q Consensus 384 PvI~ 387 (477)
|.|.
T Consensus 256 P~Vv 259 (347)
T PRK14089 256 PFVL 259 (347)
T ss_pred CEEE
Confidence 9994
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.54 E-value=1.7e-05 Score=71.85 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=115.5
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
.++++|+.-.+-++.-++..+++++.+... .++++++-=+-+..+..|.+++++..+++--++++..+-..
T Consensus 144 ~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~---------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 144 AGKMTILVGNSGDRSNRHIEALRALHQQFG---------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHhC---------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 345666654456667788778887776633 67888775433333457999999999988765788777642
Q ss_pred ---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHH
Q 011779 348 ---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 348 ---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la 424 (477)
+|..++++.||+.++.-. +.+|+|+.++ .+.+|+||++ ..+++-..++.+.+ .-++++.++-|...+.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l------~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVL------SRDNPFWQDLTEQG-LPVLFTGDDLDEDIVR 285 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEE------ecCCchHHHHHhCC-CeEEecCCcccHHHHH
Confidence 888999999999888765 4899997665 8999999994 33444445554333 2233444331122221
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+.++++....++.+. |+.++..+.|.++++....
T Consensus 286 ----------e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 286 ----------EAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----------HHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhC
Confidence 223344455555553 9999999999999987654
No 130
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.51 E-value=2.3e-06 Score=81.74 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=136.0
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHHH--HhhhCCCccccceeeeeeec----ccc--cchhhHhhcc-cccccceeeehhh
Q 011779 143 ETINTALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEM----RGH--YFKLDYVKHL-PLVAGAMIDSHVT 213 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~h~~----~~~--~~~~~~~~~~-~~~~~~~~~s~~~ 213 (477)
..+....+||+|+++.-.......+ +...++ | +.++|.- ... ......+... +.++..++.+...
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~i-----p-v~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~ 133 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRNEALAAALAAFYLNI-----P-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEA 133 (346)
T ss_dssp HHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT------E-EEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHH
T ss_pred HHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCC-----C-EEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHH
Confidence 3555678999999997443332222 223233 3 2334432 111 1111122222 2333445555555
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHH-HHhh-CCCCCCeEEEEEeeccc---CCCHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSR---GKGQDLF 288 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~il~vGrl~~---~Kg~~~l 288 (477)
.+.+. +.|.++.++.++-|..-.......+.. .+.+ ...+ ...+++++++..=+... ......+
T Consensus 134 ~~~L~-----~~G~~~~rI~~vG~~~~D~l~~~~~~~------~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i 202 (346)
T PF02350_consen 134 RERLL-----QEGEPPERIFVVGNPGIDALLQNKEEI------EEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQI 202 (346)
T ss_dssp HHHHH-----HTT--GGGEEE---HHHHHHHHHHHTT------CC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHH
T ss_pred HHHHH-----hcCCCCCeEEEEChHHHHHHHHhHHHH------hhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHH
Confidence 55544 458888999999775432222111110 0011 1111 11455666655544333 2345566
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~ 366 (477)
.++++.+.+ . +++.+++.....+ .....+.+...++ +++++.... .++..+++.|+++|--|
T Consensus 203 ~~~l~~L~~-------~-~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS-- 266 (346)
T PF02350_consen 203 LEALKALAE-------R-QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS-- 266 (346)
T ss_dssp HHHHHHHHH-------H-TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS--
T ss_pred HHHHHHHHh-------c-CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC--
Confidence 677776655 2 5788888776422 4566666666655 388888764 78889999999999655
Q ss_pred CCCcccHHHH-HHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 367 WGECFGRITI-EAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 367 ~~E~~g~~~l-EAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
| .+. ||.++|+||| .- +.|.-.+.+..+.+-+ +. .| .+++.+++.+++.+++.+..+..
T Consensus 267 -----s-GI~eEa~~lg~P~v-------~iR~~geRqe~r~~~~nvl-v~-~~--~~~I~~ai~~~l~~~~~~~~~~~-- 327 (346)
T PF02350_consen 267 -----S-GIQEEAPSLGKPVV-------NIRDSGERQEGRERGSNVL-VG-TD--PEAIIQAIEKALSDKDFYRKLKN-- 327 (346)
T ss_dssp -----H-HHHHHGGGGT--EE-------ECSSS-S-HHHHHTTSEEE-ET-SS--HHHHHHHHHHHHH-HHHHHHHHC--
T ss_pred -----c-cHHHHHHHhCCeEE-------EecCCCCCHHHHhhcceEE-eC-CC--HHHHHHHHHHHHhChHHHHhhcc--
Confidence 3 466 9999999999 55 3344456555554444 55 45 89999999999988554444321
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 011779 445 YERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 445 ~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
...-|.-...++++.++++
T Consensus 328 ---~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 328 ---RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp ---S--TT-SS-HHHHHHHHHH
T ss_pred ---CCCCCCCCcHHHHHHHhhC
Confidence 2245666667777766653
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.49 E-value=4.8e-05 Score=68.40 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-------------------hhHHHhcCC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------------------ETINTALKA 151 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------------------~~~~~~~~~ 151 (477)
.++.++...|.++||+|.+-|...+. +.+.++..|++..+.... .++....+|
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kp 85 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKP 85 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67889999999999999999977664 345555666655332111 244466899
Q ss_pred cEEEE-cCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 152 DLIVL-NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 152 DiV~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
|+.+. |++.+.. .++..++ +.+....+-+ . ....+..++.++.++.........+. .+|.++.
T Consensus 86 dv~i~~~s~~l~r---vafgLg~-----psIi~~D~eh--A-~~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p~ 149 (346)
T COG1817 86 DVAIGKHSPELPR---VAFGLGI-----PSIIFVDNEH--A-EAQNKLTLPLADVIITPEAIDEEELL-----DFGADPN 149 (346)
T ss_pred ceEeecCCcchhh---HHhhcCC-----ceEEecCChh--H-HHHhhcchhhhhheecccccchHHHH-----HhCCCcc
Confidence 99987 3333322 2223233 2222222221 1 11233444666666665555444433 4454544
Q ss_pred CeEEEecCCch----hhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--------CCCHHHHHHHHHHHHHH
Q 011779 231 DTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--------GKGQDLFLHSFYESLEL 298 (477)
Q Consensus 231 ~i~vi~ngvd~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--------~Kg~~~ll~a~~~l~~~ 298 (477)
+ .+-+||+.. ..|.|+ .++-+++|+.++...|++ |..+ .++++.+.++++++.+
T Consensus 150 ~-i~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVm--Rpe~~~A~y~~g~~~~~~~~~li~~l~k- 215 (346)
T COG1817 150 K-ISGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVM--RPEPWGAHYDNGDRGISVLPDLIKELKK- 215 (346)
T ss_pred c-eecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEE--eeccccceeeccccchhhHHHHHHHHHh-
Confidence 3 333455432 223333 456788999886544433 3332 5666667777776643
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
.-.+++-.. ...++..+.+ ++++..-..-|--+++--|++++ .+| |...-||
T Consensus 216 ----------~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi------g~g-gTMarEa 267 (346)
T COG1817 216 ----------YGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI------GAG-GTMAREA 267 (346)
T ss_pred ----------CcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee------cCC-chHHHHH
Confidence 224555443 2233344433 23333333345445677788887 332 6778999
Q ss_pred HHcCCCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 379 MAFQLPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
...|+|.| ++.-| +..+.. -+.|.++...| +.+..+...+++.++.
T Consensus 268 AlLGtpaI-------s~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 268 ALLGTPAI-------SCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred HHhCCceE-------EecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHhhchh
Confidence 99999999 65533 233333 35789999888 6777777777776654
No 132
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.39 E-value=0.00031 Score=64.78 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=103.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g- 345 (477)
.+++.|+.-.+-++.-++-.+++++.+. ...++++++- |-|. .+..|.+++.+.++++--.+++..+-
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~---------~~~~~kIivPLsYg~-~n~~Yi~~V~~~~~~lF~~~~~~iL~e 252 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQ---------FGDDVKIIVPLSYGA-NNQAYIQQVIQAGKELFGAENFQILTE 252 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHh---------cCCCeEEEEECCCCC-chHHHHHHHHHHHHHhcCccceeEhhh
Confidence 4556676444556677787676666653 2256777663 3332 23368999999998875555776654
Q ss_pred c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHH
Q 011779 346 K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPL 423 (477)
Q Consensus 346 ~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~l 423 (477)
+ .+|..++++.||+.+++.. +.+|.|+.++ .+.+|+||+ .+...-.-..+.+...-+++..++-+...+
T Consensus 253 ~mpf~eYl~lL~~cDl~if~~~-RQQgiGnI~l-Ll~~G~~v~-------L~~~np~~~~l~~~~ipVlf~~d~L~~~~v 323 (360)
T PF07429_consen 253 FMPFDEYLALLSRCDLGIFNHN-RQQGIGNICL-LLQLGKKVF-------LSRDNPFWQDLKEQGIPVLFYGDELDEALV 323 (360)
T ss_pred hCCHHHHHHHHHhCCEEEEeec-hhhhHhHHHH-HHHcCCeEE-------EecCChHHHHHHhCCCeEEeccccCCHHHH
Confidence 3 2889999999999999987 5889997665 899999999 554444333332222223444333234444
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.++=+++.. .-++.+ -|...+..+.|.+.+..+
T Consensus 324 ~ea~rql~~----------~dk~~i--aFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 324 REAQRQLAN----------VDKQQI--AFFAPNYLQGWRQALRLA 356 (360)
T ss_pred HHHHHHHhh----------Ccccce--eeeCCchHHHHHHHHHHH
Confidence 444443433 111222 266666777776666543
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.36 E-value=1.6e-05 Score=77.46 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=156.9
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCch--hhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEee
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK--ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 278 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGr 278 (477)
.++|.+++++...--...+...+++- ..+....|...-.. +...|.. ...|..++++++.+++.....
T Consensus 698 ~~mDYiITDs~tsPl~~a~~ysEkLv-~lPh~ffi~d~~qk~~~~~dpn~---------kP~r~~y~Lp~d~vvf~~FNq 767 (966)
T KOG4626|consen 698 TFMDYIITDSVTSPLELAQQYSEKLV-YLPHCFFIGDHKQKNQDVLDPNN---------KPTRSQYGLPEDAVVFCNFNQ 767 (966)
T ss_pred ceeeEEeecccCChHHHHHHHHHHHh-hCCceEEecCcccccccccCCCC---------CCCCCCCCCCCCeEEEeechh
Confidence 56788888777665554444433332 22335555433221 1111111 235778999999988887777
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHH
Q 011779 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLA 355 (477)
Q Consensus 279 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~ 355 (477)
+. |=-...++.+.++.+ +.|+..|++.--.. --++.++..++++|++ ++|+|..-. +|=-.-+.
T Consensus 768 Ly--KidP~~l~~W~~ILk-------~VPnS~LwllrfPa----~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 768 LY--KIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred hh--cCCHHHHHHHHHHHH-------hCCcceeEEEeccc----cchHHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 64 555678888888877 77998888765431 1257889999999985 788888742 55566688
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.+||++-+-. .-| -.+-+|.+.+|+|+|+.+.-..++++++. .+..-..|-++..+ .++..+.-.+|-.|.+
T Consensus 835 LaDv~LDTpl--cnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~S--ll~~~Gl~hliak~---~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 835 LADVCLDTPL--CNG-HTTGMDVLWAGVPMVTMPGETLASRVAAS--LLTALGLGHLIAKN---REEYVQIAVRLATDKE 906 (966)
T ss_pred hhhhcccCcC--cCC-cccchhhhccCCceeecccHHHHHHHHHH--HHHHcccHHHHhhh---HHHHHHHHHHhhcCHH
Confidence 8999985544 222 24568899999999954333323444321 11111234444332 6888888889988999
Q ss_pred HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHhhh
Q 011779 436 RRLTMGKRGYERVK--EIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 436 ~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
..+.+...-+.... ..|+-..++..++++|.+.+++.
T Consensus 907 ~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y 945 (966)
T KOG4626|consen 907 YLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKY 945 (966)
T ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHh
Confidence 88888777665432 35899999999999999988754
No 134
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.24 E-value=1.2e-05 Score=66.16 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=61.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------ch
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------GQ 142 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-------------~~ 142 (477)
|||+++... +.++.++++.|.++|+||++++...+.. ......+++++..+ ..
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~---------~~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYE---------KYEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCch---------hhhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 578888655 3578999999999999999999854431 11123455554332 12
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeec
Q 011779 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 187 (477)
.++.+..+||+||+|++.....+..+.+... . .++++++.|+.
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~-~-~~~~i~~~hg~ 109 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLL-K-NKKVIYTVHGS 109 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHc-C-CCCEEEEecCC
Confidence 3555678999999999765333333222211 1 15788899975
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.13 E-value=0.0076 Score=59.20 Aligned_cols=337 Identities=13% Similarity=0.066 Sum_probs=156.7
Q ss_pred cEEEEEecc-CCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhH---------------Hhh-------hhhhh
Q 011779 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEV---------------IYS-------LEHKM 129 (477)
Q Consensus 75 ~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~---------------~~~-------~~~~~ 129 (477)
|||+++..+ +..-|-+-.+..+...|++.. .+++|++..+....... .+. .....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 678888765 444788888999999999765 67888886544322000 000 00000
Q ss_pred -------------hhcCcEE-Eecc-ch-hhHHHhcCCcEEEEcCcch------hhHHHHHhhhCCCccccceeeeeeec
Q 011779 130 -------------WDRGVQV-ISAK-GQ-ETINTALKADLIVLNTAVA------GKWLDAVLKEDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 130 -------------~~~g~~v-~~~~-~~-~~~~~~~~~DiV~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~h~~ 187 (477)
...|... +..+ .. ..+....+.|+++.-.... ...+...+.... ...|++.+-++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l--~gkpv~l~gqsi 158 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM--AKKPLYMIGHSV 158 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH--cCCCEEEECCcC
Confidence 0000000 0000 01 1122345789998764111 000011111111 224566666665
Q ss_pred ccccc---hhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhh
Q 011779 188 RGHYF---KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (477)
Q Consensus 188 ~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (477)
.+... .......++.++.+...-....+ +.+.+|++.+++.+.+.. .+.-+....... . ...+...+
T Consensus 159 GPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~-----~Lk~lGv~~~~v~~~aDp---AF~L~~~~~~~~-~-~~~~~~~~ 228 (426)
T PRK10017 159 GPFQDEQFNQLANYVFGHCDALILRESVSLD-----LMKRSNITTAKVEHGVDT---AWLVDHHTEDFT-A-SYAVQHWL 228 (426)
T ss_pred CCcCCHHHHHHHHHHHhcCCEEEEccHHHHH-----HHHHhCCCccceEEecCh---hhhCCccccccc-c-chhhhhhh
Confidence 43322 11222334455554443333333 334678888778886643 322111100000 0 00111122
Q ss_pred CCCCCCeEEEEE-eeccc-CCC----HHHHHHHHHHHHHHHHhhccCcCceEEEEEec--CCCc-chHHHHHHHHHHHhc
Q 011779 265 GVRNEDLLFAII-NSVSR-GKG----QDLFLHSFYESLELIKEKKLEVPSVHAVIIGS--DMNA-QTKFESELRNYVMQK 335 (477)
Q Consensus 265 ~~~~~~~~il~v-Grl~~-~Kg----~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~--g~~~-~~~~~~~l~~~~~~~ 335 (477)
+...++.+|++. ..+.+ .|+ .+...+.+.++.+.+.+ + +.+++++-- +.+. ...+....++..+.+
T Consensus 229 ~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~---~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 229 DVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIID---E--GYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred cccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHH---C--CCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 222233344433 33321 121 12333444444444433 2 334443332 1100 112344445555555
Q ss_pred CCCCcEEEcc-c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceee
Q 011779 336 KIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL 412 (477)
Q Consensus 336 ~l~~~v~~~g-~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l 412 (477)
.-+.+++++. . ..++..+++.||++|-.-. -.++=|++.|+|+|...+ ....-|+.+.+ |...++
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y---~~K~~~~~~~l--g~~~~~ 371 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINY---EHKSAGIMQQL--GLPEMA 371 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeee---hHHHHHHHHHc--CCccEE
Confidence 4344444432 1 2567789999999885443 257779999999993211 11122222222 223344
Q ss_pred ecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
++..+.+.+++.+.+.+++++.+..++.
T Consensus 372 ~~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 372 IDIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred echhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 5554444789999999999987655443
No 136
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.12 E-value=4e-08 Score=83.98 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=65.2
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccccc--CCCceEEeecCCceeeecCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA--AGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~--~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+|.+.++.+++.++|+.||++|.- +-+.++.|++++|+|.|..+.+. ..+ .-.....+.+...|..+...
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~------aG~~Ti~E~l~~g~P~I~ip~~~-~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISH------AGAGTIAEALALGKPAIVIPLPG-AADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEEC------S-CHHHHHHHHCT--EEEE--TT-T-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeC------CCccHHHHHHHcCCCeeccCCCC-cchHHHHHHHHHHHHcCCccccCcc
Confidence 6899999999999999999998843 33579999999999999433322 110 00022233344456666655
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
+.+++.|.++|.+++.++..+..+.+++
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5447889999999999988777665554
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.08 E-value=0.00034 Score=64.20 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++.+|. -.-|.+++..+++.. ..+.+ ....-++|.|...+. ..++.+.+.+.+. ++|.+..+.
T Consensus 218 E~~~Ilvs~GG--G~dG~eLi~~~l~A~-~~l~~----l~~~~~ivtGP~MP~--~~r~~l~~~A~~~---p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVGG--GADGAELIETALAAA-QLLAG----LNHKWLIVTGPFMPE--AQRQKLLASAPKR---PHISIFEFR 285 (400)
T ss_pred ccceEEEecCC--ChhhHHHHHHHHHHh-hhCCC----CCcceEEEeCCCCCH--HHHHHHHHhcccC---CCeEEEEhh
Confidence 45567777774 345655554444332 21111 111235667765432 2455555544433 689999999
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE-Eeec------CCceeeecCCCCCH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE-IVVN------GTTGLLHPVGKEGI 420 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e-~v~~------~~~G~l~~~~d~~~ 420 (477)
+++..+++.|+..|.-+- =+++.|-+++|+|.++ ....-+-.| +++- |-...+. |.+..+
T Consensus 286 ~~~~~ll~gA~~vVSm~G------YNTvCeILs~~k~aLi------vPr~~p~eEQliRA~Rl~~LGL~dvL~-pe~lt~ 352 (400)
T COG4671 286 NDFESLLAGARLVVSMGG------YNTVCEILSFGKPALI------VPRAAPREEQLIRAQRLEELGLVDVLL-PENLTP 352 (400)
T ss_pred hhHHHHHHhhheeeeccc------chhhhHHHhCCCceEE------eccCCCcHHHHHHHHHHHhcCcceeeC-cccCCh
Confidence 999999999999994433 2789999999999883 222221112 1210 2222333 334458
Q ss_pred HHHHHHHHHHHhC
Q 011779 421 TPLAKNIVKLATH 433 (477)
Q Consensus 421 ~~la~~i~~ll~~ 433 (477)
+.|+++|..++..
T Consensus 353 ~~La~al~~~l~~ 365 (400)
T COG4671 353 QNLADALKAALAR 365 (400)
T ss_pred HHHHHHHHhcccC
Confidence 8999999988873
No 138
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00056 Score=64.37 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=80.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE----EeecC-Cceeeec-----CCC
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE----IVVNG-TTGLLHP-----VGK 417 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e----~v~~~-~~G~l~~-----~~d 417 (477)
-|..++.+.|.+-|+||+ +|++|.+..|.-.+|+|-| +|+.+|..- .|.+. ..|+.+- ..|
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSv-------tTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~d 562 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSV-------TTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPD 562 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccc-------cccccchhhhHHHHhcCchhceEEEEecccCChh
Confidence 567889999999999999 9999999999999999999 999888643 34332 2454332 123
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
+++++|++.+.++.. ...|+++-++.| ++.....+|..+...|.+.=...+
T Consensus 563 eSv~qL~~~m~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 563 ESVQQLASFMYEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 347777777777664 345566555444 566677899998887766444333
No 139
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=8.6e-05 Score=75.61 Aligned_cols=143 Identities=22% Similarity=0.169 Sum_probs=109.0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH---HHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF---ESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~---~~~l~~~~~~~~l~~~v~ 342 (477)
++++.+.++++-|+..+|.+.+.+.-...+.+.+++. ..|.+++++.|..-|.+..- ...+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 4567899999999999999999887777777776631 55778888888865444322 222233334433345788
Q ss_pred Eccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee--cCCceeeecCCC
Q 011779 343 FVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV--NGTTGLLHPVGK 417 (477)
Q Consensus 343 ~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~--~~~~G~l~~~~d 417 (477)
|+.. ++-...++.++||-...|..-.|..|..-+-||.-|.+-| +|--|...|+.+ .++||+++....
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGalti-------gtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTL-------GTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCcee-------eccccHHHHHHHhcCCCceEEeCCch
Confidence 8875 3444556899999998887768999999999999999999 999999999986 789999998764
No 140
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.90 E-value=0.00014 Score=73.26 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=91.7
Q ss_pred CCCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE
Q 011779 268 NEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~ 342 (477)
++..+++..|..... +-...+++|++++ + .++++..++. ... .++++||.
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~-----~~~--------~~~p~Nv~ 349 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGE-----VEA--------INLPANVL 349 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCC-----cCc--------ccCCCceE
Confidence 345777778886532 2234455555433 4 4666665541 111 24568999
Q ss_pred EccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 343 FVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 343 ~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+.++.. -.+++ ..+++|| ..|-..++.||+.+|+|+|+.|.. .|.......++..+.|...+..+.+.
T Consensus 350 i~~w~P-q~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~---~DQ~~Na~rv~~~G~G~~l~~~~~t~ 419 (507)
T PHA03392 350 TQKWFP-QRAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMM---GDQFYNTNKYVELGIGRALDTVTVSA 419 (507)
T ss_pred EecCCC-HHHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCC---ccHHHHHHHHHHcCcEEEeccCCcCH
Confidence 999864 35677 4589999 444457899999999999932111 13333444455556788887766568
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
+++.++|.++++|+..++...+-++.
T Consensus 420 ~~l~~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 420 AQLVLAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998766655444433
No 141
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.86 E-value=2.1e-05 Score=71.39 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=33.4
Q ss_pred EEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 76 ~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
||++++.++.| ||...++..|+++|+++||+|.|+++..+.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~ 45 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGF 45 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchh
Confidence 69999988777 999999999999999999999999987643
No 142
>PRK14986 glycogen phosphorylase; Provisional
Probab=97.46 E-value=0.00096 Score=69.08 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc--------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 335 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-------- 335 (477)
.++++.+.++++-|+..+|...+ ++..+..+.+...+........++++.|..-|.+.. .+.+.+++...
T Consensus 538 ~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIk~I~~va~~in~Dp 616 (815)
T PRK14986 538 VVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYM-AKHIIHLINDVAKVINNDP 616 (815)
T ss_pred ccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHH-HHHHHHHHHHHHHHhccCh
Confidence 35677889999999999999999 888877776544332112235889999986554433 33333333221
Q ss_pred CCCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 336 KIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 336 ~l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
.+.+ +|.|+.. ++--..++.++|+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 617 ~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtl-------gtlDG~nvEi~e~vG~eN 689 (815)
T PRK14986 617 QIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTI-------GTLDGANVEMLEHVGEEN 689 (815)
T ss_pred hhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceee-------eccCCchhHHHHhcCCCc
Confidence 2334 6888875 3445667899999998888768999999999999999999 9999999998876 789
Q ss_pred eeeecCCCCCHHHHHHH
Q 011779 410 GLLHPVGKEGITPLAKN 426 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~ 426 (477)
|+++... .++..+.
T Consensus 690 ~~~fG~~---~~ev~~~ 703 (815)
T PRK14986 690 IFIFGNT---AEEVEAL 703 (815)
T ss_pred EEEeCCC---HHHHHHH
Confidence 9999765 4555443
No 143
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.34 E-value=0.0015 Score=67.45 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 336 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~------- 336 (477)
.++++.+..+++-|+..+|...+ ++..+..+.+...+........++++.|...|... ..+.+.+++....
T Consensus 522 ~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~iN~Dp 600 (794)
T TIGR02093 522 EVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVAEVVNNDP 600 (794)
T ss_pred ccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHHHHhccCh
Confidence 35577788899999999999999 88887777654433211122468889998655443 3444444444332
Q ss_pred -CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 337 -IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 337 -l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
+.+ +|.|+.. ++--..++.+||+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 601 ~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltl-------gtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 601 AVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTI-------GTLDGANVEIREEVGAEN 673 (794)
T ss_pred hhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCccee-------ecccchhHHHHHHhCccc
Confidence 344 6888875 3556667999999998888768999999999999999999 9999999998876 789
Q ss_pred eeeecCCCCCHHHHHHH
Q 011779 410 GLLHPVGKEGITPLAKN 426 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~ 426 (477)
+++|-.. .++..+.
T Consensus 674 ~fiFG~~---~~ev~~~ 687 (794)
T TIGR02093 674 IFIFGLT---VEEVEAL 687 (794)
T ss_pred EEEcCCC---HHHHHHH
Confidence 9998765 4555443
No 144
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.25 E-value=0.0015 Score=67.79 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=108.2
Q ss_pred CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc--------C
Q 011779 266 VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK--------K 336 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~ 336 (477)
++++.+.++++-|+..+|.+.+ ++..+..+.+............++++.|...|... ..+.+.+++... .
T Consensus 526 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHhccChh
Confidence 5678899999999999999999 88877776654333111123478888888655443 233333333322 1
Q ss_pred CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCce
Q 011779 337 IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTG 410 (477)
Q Consensus 337 l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G 410 (477)
+.+ +|.|+.. ++--..++.+||+-...|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|+
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltl-------gtlDGanvEi~e~vG~eN~ 677 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTI-------GTLDGANVEIAEEVGEENI 677 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceee-------ecccchhHHHHHHhCcCcE
Confidence 334 6888875 3555667899999998888768999999999999999999 9999999998876 7899
Q ss_pred eeecCCCCCHHHHHH
Q 011779 411 LLHPVGKEGITPLAK 425 (477)
Q Consensus 411 ~l~~~~d~~~~~la~ 425 (477)
++|-.. .++..+
T Consensus 678 fiFG~~---~~ev~~ 689 (797)
T cd04300 678 FIFGLT---AEEVEA 689 (797)
T ss_pred EEeCCC---HHHHHH
Confidence 999765 454443
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.021 Score=59.37 Aligned_cols=191 Identities=16% Similarity=0.071 Sum_probs=130.8
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
.+..+|-|+|...|..............+++..+ .++.+|+-+-|+..-||+..=+.++.++....++ -.+.+.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe---~~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPE---WIDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChh---hhceEE
Confidence 4667888999888766554443334455666655 4677888889999999999999999999885554 234566
Q ss_pred EEEEecCCCcchHHHHHHHHHH----Hh----cCC--CCcEEEccc---cCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 311 AVIIGSDMNAQTKFESELRNYV----MQ----KKI--QDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~----~~----~~l--~~~v~~~g~---~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
++.+..+...+.+..++++..+ .+ .+- ...|+++-. ..++-++++.+|+++..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 7666655433333222333222 21 111 123433332 2778889999999999998 9999999999
Q ss_pred HHHcC----CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 378 AMAFQ----LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 378 Ama~G----~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+..|. .+.| .+..-|..+.+++ ...++.+.| .++++.+|...++.++...++
T Consensus 392 ~i~~~~~~~~~lV-------lsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 392 YILCQENKKSVLV-------LSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEEREL 447 (732)
T ss_pred HHHhhcccCCceE-------Eeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHHhh
Confidence 98875 5677 6777777777644 567888888 899999999999855443333
No 146
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.18 E-value=0.0064 Score=62.24 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh--------cC
Q 011779 266 VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ--------KK 336 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~--------~~ 336 (477)
++++.+.++++-|+..+|...+ ++..+..+.+...........+++++.|.--|.+.. .+++.+++.+ -.
T Consensus 440 ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~-gK~iIk~I~~va~~in~Dp~ 518 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYM-GKEIIKLINNVAEVINNDPE 518 (713)
T ss_dssp --TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HH-HHHHHHHHHHHHHHHCT-TT
T ss_pred CCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHH-HHHHHHHHHHHHHHHhcChh
Confidence 5678899999999999999988 555555554433332112345889999986554432 3333333322 12
Q ss_pred CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCce
Q 011779 337 IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTG 410 (477)
Q Consensus 337 l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G 410 (477)
+.+ +|.|+.. ++--..++.++||-+..|+.-.|..|..-+-||.-|.+-+ ++--|...|+.+. .+|.
T Consensus 519 v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~l-------stlDG~niEi~e~vG~eN~ 591 (713)
T PF00343_consen 519 VGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNL-------STLDGWNIEIAEAVGEENI 591 (713)
T ss_dssp TCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEE-------EESSTCHHHHHHHH-GGGS
T ss_pred hccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEE-------ecccchhHHHHHhcCCCcE
Confidence 334 6888875 3445566899999998887668999999999999999999 9999998888753 3577
Q ss_pred eeecCCCCCHHHHHH
Q 011779 411 LLHPVGKEGITPLAK 425 (477)
Q Consensus 411 ~l~~~~d~~~~~la~ 425 (477)
++|-.. .+++.+
T Consensus 592 fiFG~~---~~ev~~ 603 (713)
T PF00343_consen 592 FIFGLT---AEEVEE 603 (713)
T ss_dssp EEES-B---HHHHHH
T ss_pred EEcCCC---HHHHHH
Confidence 887653 455443
No 147
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.95 E-value=0.005 Score=62.63 Aligned_cols=152 Identities=14% Similarity=0.050 Sum_probs=86.5
Q ss_pred HHHHHhhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 258 ~~~r~~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
+++.+-+.- .++..+++..|.+.. .-.+..++++.+..+ +.|+ ++++.-++. ....
T Consensus 264 ~~~~~~~~~~~~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~-----~~~~--------- 320 (500)
T PF00201_consen 264 EELWNFLDSSGKKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGE-----PPEN--------- 320 (500)
T ss_dssp HHHHHHTSTTTTTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCS-----HGCH---------
T ss_pred cccchhhhccCCCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-ccccccccc-----cccc---------
Confidence 344444443 245677778888753 234444444444433 4466 677765541 1111
Q ss_pred CCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
+++|+.+..|..+ .++++...+-++=+ -|--.++.||+.+|+|+|+.|. ..|.......+++...|...+..
T Consensus 321 l~~n~~~~~W~PQ-~~lL~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~---~~DQ~~na~~~~~~G~g~~l~~~ 392 (500)
T PF00201_consen 321 LPKNVLIVKWLPQ-NDLLAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPL---FGDQPRNAARVEEKGVGVVLDKN 392 (500)
T ss_dssp HHTTEEEESS--H-HHHHTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GC---STTHHHHHHHHHHTTSEEEEGGG
T ss_pred ccceEEEeccccc-hhhhhcccceeeee----ccccchhhhhhhccCCccCCCC---cccCCccceEEEEEeeEEEEEec
Confidence 2358888888643 46776555433323 3445789999999999993211 12333344555566678888877
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+-+.+++.++|.++++|+..++..
T Consensus 393 ~~~~~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 393 DLTEEELRAAIREVLENPSYKENA 416 (500)
T ss_dssp C-SHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHH
Confidence 766899999999999998655443
No 148
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.88 E-value=0.026 Score=56.49 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=81.8
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++..|.... -..+.+-+.+.-+.+ .+..++++..+. ...+.+.. .+++.+.++.
T Consensus 273 ~~~vvyvsfGs~~~-~~~~~~~~~~~~l~~---------~~~~~lw~~~~~------~~~~~~~~-----~~~~~v~~w~ 331 (459)
T PLN02448 273 EGSVLYVSLGSFLS-VSSAQMDEIAAGLRD---------SGVRFLWVARGE------ASRLKEIC-----GDMGLVVPWC 331 (459)
T ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHHh---------CCCCEEEEEcCc------hhhHhHhc-----cCCEEEeccC
Confidence 34567777887643 223333333333322 456777765541 11222221 2467777875
Q ss_pred CCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC-----CCCC
Q 011779 348 LTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV-----GKEG 419 (477)
Q Consensus 348 ~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~-----~d~~ 419 (477)
. -..+++..++ || ..+--++++||+++|+|+|+-+ . ..|.......+.+. +.|+-+.. +..+
T Consensus 332 p-Q~~iL~h~~v~~fv------tHgG~nS~~eal~~GvP~l~~P--~-~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~ 401 (459)
T PLN02448 332 D-QLKVLCHSSVGGFW------THCGWNSTLEAVFAGVPMLTFP--L-FWDQPLNSKLIVEDWKIGWRVKREVGEETLVG 401 (459)
T ss_pred C-HHHHhccCccceEE------ecCchhHHHHHHHcCCCEEecc--c-cccchhhHHHHHHHhCceEEEecccccCCcCc
Confidence 3 3457777776 55 2333468999999999999311 1 22333333444332 34555531 1123
Q ss_pred HHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 011779 420 ITPLAKNIVKLATHV-ERRLTMGKRGYE 446 (477)
Q Consensus 420 ~~~la~~i~~ll~~~-~~~~~~~~~a~~ 446 (477)
.+++++++.+++.++ +.-++|++++.+
T Consensus 402 ~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 402 REEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 799999999999864 333444444443
No 149
>PLN02670 transferase, transferring glycosyl groups
Probab=96.84 E-value=0.018 Score=57.29 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=68.5
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK--- 417 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d--- 417 (477)
+.+.+|..+ .++++..++-.+-| .+--++++||+++|+|+|+.|. ..|.......+..-+.|+.++..+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~Fvt----HcGwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~v~~~g~Gv~l~~~~~~~ 412 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLT----HCGWNSVVEGLGFGRVLILFPV---LNEQGLNTRLLHGKKLGLEVPRDERDG 412 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeee----cCCcchHHHHHHcCCCEEeCcc---hhccHHHHHHHHHcCeeEEeeccccCC
Confidence 566677543 45777766633323 2334789999999999993221 223333333444445676664311
Q ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHH
Q 011779 418 -EGITPLAKNIVKLATHVERRLTMGKRGYE---RVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 418 -~~~~~la~~i~~ll~~~~~~~~~~~~a~~---~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
-+.+++.+++.+++.+++ -+++.+++++ .+.++=..+++++.+++.+.+.
T Consensus 413 ~~~~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 413 SFTSDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred cCcHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 237999999999998752 2234444443 3333344555555555555443
No 150
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=96.84 E-value=0.002 Score=66.51 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=105.6
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 336 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~------- 336 (477)
.++++.+.++++-|+..+|...+ ++..+..+.+...+........++++.|...|... ..+.+.+++....
T Consensus 524 ~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp 602 (798)
T PRK14985 524 EINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAEVINNDP 602 (798)
T ss_pred ccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhcCCh
Confidence 35677788999999999999999 88887777654333111113478999998655443 3333333333221
Q ss_pred -CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 337 -IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 337 -l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
+.+ +|.|+.. ++--..++.++|+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 603 ~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtl-------gtlDGanvEi~e~vG~eN 675 (798)
T PRK14985 603 LVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTV-------GTLDGANVEIAEQVGEEN 675 (798)
T ss_pred hhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceee-------ecccchHHHHHHHhCcCc
Confidence 233 6888875 3555667899999998888768999999999999999999 9999998898865 789
Q ss_pred eeeecCC
Q 011779 410 GLLHPVG 416 (477)
Q Consensus 410 G~l~~~~ 416 (477)
|+++-..
T Consensus 676 ~f~fG~~ 682 (798)
T PRK14985 676 IFIFGHT 682 (798)
T ss_pred EEEeCCC
Confidence 9999765
No 151
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.74 E-value=0.15 Score=45.57 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-hhHHHhcCCcEEEEcCcchhhHH-
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETINTALKADLIVLNTAVAGKWL- 165 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~DiV~~~~~~~~~~~- 165 (477)
|+.+...++-....+.|++++++........... ........+.++..... ..+.+...+|++.+++..+...-
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~d----sH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE 77 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPD----SHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQE 77 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTT----SSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-H
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCcc----ccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHH
Confidence 7778888999999999999999985443211100 11111222333333333 34445578999999984433221
Q ss_pred ------HHHhhhCCCccccceeeeeeecccccchh--hHhhcccccccceeeehhhH---HHHHHHhHhh--hccCCCCe
Q 011779 166 ------DAVLKEDVPRVLPNVLWWIHEMRGHYFKL--DYVKHLPLVAGAMIDSHVTA---EYWKNRTRER--LRIKMPDT 232 (477)
Q Consensus 166 ------~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~--~~~~~~~i 232 (477)
..++..-.|. .+++...|+.+.....+ .....++.+|.+.+.+.... ..+...+... ++-..++.
T Consensus 78 ~~iNnY~kii~~Ik~~--ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~ 155 (355)
T PF11440_consen 78 AIINNYEKIIKKIKPS--IKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKF 155 (355)
T ss_dssp HHHHHHHHHHHCS-TT--SEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-----
T ss_pred HHHHHHHHHHHhcccc--ceeEEEeeccceeeccccccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhc
Confidence 1222221111 24566778765433222 23344566677776654332 2222222211 11111223
Q ss_pred EEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE---EEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCce
Q 011779 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (477)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---l~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~ 309 (477)
..+.|.-++. + -+..|..+-.+...+.. +|+||..-.||...+++.-.+..+ -++.
T Consensus 156 p~v~nfqpp~-------~------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~~ 214 (355)
T PF11440_consen 156 PMVFNFQPPM-------D------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAGF 214 (355)
T ss_dssp --EEE----B--------------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT-
T ss_pred ceeeecCCcc-------c------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------Ccch
Confidence 3333322211 1 24455655544555655 899999999999999998887653 2677
Q ss_pred EEEEEecCCCcchHHHHHHHHH-----------HHhcCCC--CcEEEccc-c-CCHHHHHHhcCEEEEcCCC----CCCc
Q 011779 310 HAVIIGSDMNAQTKFESELRNY-----------VMQKKIQ--DRVHFVNK-T-LTVAPYLAAIDVLVQNSQA----WGEC 370 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~-----------~~~~~l~--~~v~~~g~-~-~~l~~~~~~aDv~v~pS~~----~~E~ 370 (477)
.-++-|-.- . +..-.+.+. +.+..+. .-+..+|. + ++..+.|+.+-..+.-+.. -.+.
T Consensus 215 ~t~~~Gier--S-~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~ 291 (355)
T PF11440_consen 215 KTIMEGIER--S-PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRS 291 (355)
T ss_dssp EEEEE---S--S-THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS-
T ss_pred hHHhhhhhc--C-CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhh
Confidence 778877531 1 111112221 0011111 23556664 3 7788888888766544331 1234
Q ss_pred ccHHHHHHHHcCC-CEEeeccccccccCCCceE-------EeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 371 FGRITIEAMAFQL-PVLLQKCLYQGTAAGGTTE-------IVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 371 ~g~~~lEAma~G~-PvI~~~~~~~~~~~gg~~e-------~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
+-.+-+|..|||. ||. -...|.... ++......+.++..| .++-.+.|.++.++
T Consensus 292 mEYt~iE~~A~GtIPVF-------~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~ 353 (355)
T PF11440_consen 292 MEYTQIELIAVGTIPVF-------DKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANN 353 (355)
T ss_dssp --HHHHHHHHCTSEEEE-------EHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-
T ss_pred hhhheeeeeeeceeeee-------eccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhcc
Confidence 6678999999997 555 444443322 222333456777666 88888888777654
No 152
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.48 Score=45.28 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCeEEEEEe-ecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 269 EDLLFAIIN-SVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 269 ~~~~il~vG-rl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.+++..| +-...|+.. ...+.++.+.+ ...++++.|+. ...+..+++.+.++- .+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~---------~~~~Vvl~g~~-----~e~e~~~~i~~~~~~--~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA---------KGYQVVLFGGP-----DEEERAEEIAKGLPN--AVILAG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH---------CCCEEEEecCh-----HHHHHHHHHHHhcCC--ccccCC
Confidence 466777777 655777764 45555555544 33788999987 456666666665532 223667
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+.. | .+-=|.|.|+|+|+.
T Consensus 239 k~sL~e~~~li~~a~l~I~~DS------g-~~HlAaA~~~P~I~i 276 (334)
T COG0859 239 KTSLEELAALIAGADLVIGNDS------G-PMHLAAALGTPTIAL 276 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccCC------h-HHHHHHHcCCCEEEE
Confidence 53 889999999999996654 3 344489999999954
No 153
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.56 E-value=0.022 Score=56.56 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=58.6
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~ 415 (477)
+|..+.++..+ ..+++..++ ||. .+--++++||+++|+|+|+ .|. ..|.......+.+. +.|+-+.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fvt------H~G~nS~~Ea~~~GvP~l~--~P~-~~DQ~~na~~~~~~~~~G~~~~- 392 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFWS------HCGWNSTLESIGEGVPMIC--KPF-SSDQKVNARYLECVWKIGIQVE- 392 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeeee------cCchhHHHHHHHcCCCEEe--ccc-cccCHHHHHHHHHHhCeeEEeC-
Confidence 56677777533 347777555 663 2233689999999999993 222 33444444444333 4666553
Q ss_pred CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 416 GKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
++.+.+++++++.+++.+++ -+++.+++++
T Consensus 393 ~~~~~~~v~~av~~lm~~~~-~~~~r~~a~~ 422 (451)
T PLN02410 393 GDLDRGAVERAVKRLMVEEE-GEEMRKRAIS 422 (451)
T ss_pred CcccHHHHHHHHHHHHcCCc-HHHHHHHHHH
Confidence 23337999999999998754 3344444443
No 154
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.48 E-value=0.3 Score=48.63 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=89.3
Q ss_pred Eee-cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHH
Q 011779 276 INS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAP 352 (477)
Q Consensus 276 vGr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~ 352 (477)
.|. -.-.||-+..++++.+. -+++-.|.+... ... .+++-|.=+|. .+++..
T Consensus 283 yGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~---------~~P~~V~NHG~l~~~ef~~ 337 (559)
T PF15024_consen 283 YGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPP---------NVPSFVKNHGILSGDEFQQ 337 (559)
T ss_pred EccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCc---------ccchhhhhcCcCCHHHHHH
Confidence 354 33366777777777653 456766655531 111 22222333333 388999
Q ss_pred HHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC---------------ceEEeec---------CC
Q 011779 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG---------------TTEIVVN---------GT 408 (477)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg---------------~~e~v~~---------~~ 408 (477)
+++.+.+||--... +| |=+.+||+|.|+|.| -..... .+++-.. .-
T Consensus 338 lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFl-------Np~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~P 407 (559)
T PF15024_consen 338 LLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFL-------NPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEP 407 (559)
T ss_pred HHHhhhEeeecCCC-CC--CCChHHHHHcCCccc-------cccCCCCCcccccccccCCCCcceeccCChHHHhhCCCC
Confidence 99999999944432 34 346899999999999 332211 1121110 11
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
.-+.++.+| .+++.+||.+++..+- .-++-..|+-+.|.+++..+++.
T Consensus 408 hVytVd~~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 408 HVYTVDINN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred eEEEEcCCC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 335667667 8999999999988642 12344558888888888777654
No 155
>PLN03004 UDP-glycosyltransferase
Probab=96.44 E-value=0.04 Score=54.63 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=58.7
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC-
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG- 416 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~- 416 (477)
.++.+.+|..+ .++++.+++-.+-+ .+--++++||+++|+|+|+. |. ..|.......+.+ -+.|..++.+
T Consensus 334 ~g~~v~~W~PQ-~~iL~H~~v~~FvT----H~G~nS~lEal~~GVP~v~~--P~-~~DQ~~na~~~~~~~g~g~~l~~~~ 405 (451)
T PLN03004 334 KGMVVKSWAPQ-VPVLNHKAVGGFVT----HCGWNSILEAVCAGVPMVAW--PL-YAEQRFNRVMIVDEIKIAISMNESE 405 (451)
T ss_pred CcEEEEeeCCH-HHHhCCCccceEec----cCcchHHHHHHHcCCCEEec--cc-cccchhhHHHHHHHhCceEEecCCc
Confidence 46777787543 45888899833323 23346899999999999932 21 3344444444433 3567666532
Q ss_pred --CCCHHHHHHHHHHHHhCHHHH
Q 011779 417 --KEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~~~~ 437 (477)
..+.+++++++.+++.+++.+
T Consensus 406 ~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 406 TGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred CCccCHHHHHHHHHHHhcCHHHH
Confidence 124899999999999875533
No 156
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.41 E-value=0.1 Score=52.56 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=52.2
Q ss_pred CCcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeee-
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLH- 413 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~- 413 (477)
+.++.+.++..+ ..+++.+++ || + .+--++++||+++|+|+|+.|. ..+..-....+.+ -+.|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fv--t----H~G~nS~~Eal~~GVP~v~~P~---~~DQ~~na~~~~~~~~~G~~~~ 413 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFV--T----HCGWNSLLEGVAAGLPMVTWPV---GAEQFYNEKLVTQVLRTGVSVG 413 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceee--e----cCcchHHHHHHHcCCCeeeccc---hhhhhhhHHHHHHhhcceeEec
Confidence 357888888644 568888876 55 3 2234689999999999993211 2233223322211 1233322
Q ss_pred -------cCCCCCHHHHHHHHHHHHhCH
Q 011779 414 -------PVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 414 -------~~~d~~~~~la~~i~~ll~~~ 434 (477)
+.+.-+.+++++++++++.++
T Consensus 414 ~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 414 AKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccccccccCcccHHHHHHHHHHHhcCc
Confidence 112223889999999999875
No 157
>PLN00414 glycosyltransferase family protein
Probab=96.37 E-value=0.097 Score=51.98 Aligned_cols=157 Identities=8% Similarity=-0.029 Sum_probs=86.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEec--CC-CcchHHHHHHHHHHHhcCCCCcEEE
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGS--DM-NAQTKFESELRNYVMQKKIQDRVHF 343 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~--g~-~~~~~~~~~l~~~~~~~~l~~~v~~ 343 (477)
++..+.+..|.+... ..+.+.+.+..|.. .+..| +++-. +. .......+.+++.++.. ...+
T Consensus 251 ~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~---------s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~----g~vv 316 (446)
T PLN00414 251 PGSVVFCAFGTQFFF-EKDQFQEFCLGMEL---------TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGR----GIVW 316 (446)
T ss_pred CCceEEEeecccccC-CHHHHHHHHHHHHH---------cCCCeEEEEecCCCcccchhhCChhHHHHhcCC----CeEE
Confidence 456777788886543 33556666665533 23333 33322 10 00111223344444432 2355
Q ss_pred ccccCCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee-cCCceeeecCC---C
Q 011779 344 VNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV-NGTTGLLHPVG---K 417 (477)
Q Consensus 344 ~g~~~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~-~~~~G~l~~~~---d 417 (477)
.++..+ ..+++.. +.|| ..+--++++||+++|+|+|+.+. ..+..-....+. .-+.|..+..+ .
T Consensus 317 ~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Ea~~~GvP~l~~P~---~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 317 EGWVEQ-PLILSHPSVGCFV------NHCGFGSMWESLVSDCQIVFIPQ---LADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eccCCH-HHHhcCCccceEE------ecCchhHHHHHHHcCCCEEecCc---ccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 566533 4577666 5576 23334789999999999993211 223333334442 33456555321 1
Q ss_pred CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHV-ERRLTMGKRGYERV 448 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~~ 448 (477)
.+.+++++++++++.++ +..+++.+++++.-
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 23899999999999764 45666777766543
No 158
>PLN02764 glycosyltransferase family protein
Probab=96.32 E-value=0.083 Score=52.33 Aligned_cols=96 Identities=13% Similarity=-0.040 Sum_probs=56.6
Q ss_pred EEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC-
Q 011779 341 VHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~- 416 (477)
+.+.+|..+ .++++...+ || ..+--++++||+.+|+|+|+. |. ..+.......+.+ -..|+-+...
T Consensus 319 ~v~~~W~PQ-~~vL~h~~v~~Fv------tH~G~nS~~Eal~~GVP~l~~--P~-~~DQ~~na~~l~~~~g~gv~~~~~~ 388 (453)
T PLN02764 319 VVWGGWVQQ-PLILSHPSVGCFV------SHCGFGSMWESLLSDCQIVLV--PQ-LGDQVLNTRLLSDELKVSVEVAREE 388 (453)
T ss_pred cEEeCCCCH-HHHhcCcccCeEE------ecCCchHHHHHHHcCCCEEeC--Cc-ccchHHHHHHHHHHhceEEEecccc
Confidence 455566433 356666544 66 233357899999999999931 11 2233333344432 2345543221
Q ss_pred --CCCHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 011779 417 --KEGITPLAKNIVKLATHV-ERRLTMGKRGYE 446 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 446 (477)
+.+.+++.+++++++.++ +..+++.+++++
T Consensus 389 ~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 389 TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 223899999999999864 445566666554
No 159
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.24 E-value=0.18 Score=50.54 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=52.0
Q ss_pred CcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~ 415 (477)
.++.+.++..+ ..+++. .++||. .+--++++||+++|+|+|+- |. ..|.......+.+ -+.|.-...
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fvt------H~G~nS~~Eal~~GvP~l~~--P~-~~DQ~~na~~v~~~~gvG~~~~~ 412 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFLT------HCGWNSVLEGLVAGVPMLAW--PM-AADQFVNASLLVDELKVAVRVCE 412 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEEe------cCCchHHHHHHHcCCCEEeC--Cc-cccchhhHHHHHHhhceeEEecc
Confidence 46777788644 557775 566772 33346899999999999932 21 2333333333322 245555522
Q ss_pred C---CCCHHHHHHHHHHHHh-CHH
Q 011779 416 G---KEGITPLAKNIVKLAT-HVE 435 (477)
Q Consensus 416 ~---d~~~~~la~~i~~ll~-~~~ 435 (477)
+ ..+.+++++++.+++. +++
T Consensus 413 ~~~~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 413 GADTVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CCCCCcCHHHHHHHHHHHhhccHH
Confidence 1 1126899999999884 443
No 160
>PLN02562 UDP-glycosyltransferase
Probab=96.23 E-value=0.11 Score=51.87 Aligned_cols=92 Identities=13% Similarity=-0.009 Sum_probs=57.5
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d 417 (477)
+|+.+.++. .-..+++..++-.+-+ .+--++++||+.+|+|+|+. |. ..|.......+.+. ..|+-+..-+
T Consensus 328 ~~~~v~~w~-PQ~~iL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~--P~-~~DQ~~na~~~~~~~g~g~~~~~~~ 399 (448)
T PLN02562 328 KQGKVVSWA-PQLEVLKHQAVGCYLT----HCGWNSTMEAIQCQKRLLCY--PV-AGDQFVNCAYIVDVWKIGVRISGFG 399 (448)
T ss_pred cCEEEEecC-CHHHHhCCCccceEEe----cCcchhHHHHHHcCCCEEeC--Cc-ccchHHHHHHHHHHhCceeEeCCCC
Confidence 577777875 3356777766533323 23346899999999999931 11 23444444444432 4555553333
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.+++++++.+++.+++.+++.
T Consensus 400 --~~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 400 --QKEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred --HHHHHHHHHHHhCCHHHHHHH
Confidence 899999999999887655443
No 161
>PLN02208 glycosyltransferase family protein
Probab=96.18 E-value=0.13 Score=51.14 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=60.7
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d 417 (477)
.++.+.+|..+ .++++...+-.+-|. +--++++||+++|+|+|+. |. ..|.......+.+ -+.|..+...+
T Consensus 311 ~g~~v~~W~PQ-~~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~--P~-~~DQ~~na~~~~~~~g~gv~~~~~~ 382 (442)
T PLN02208 311 RGVVWGGWVQQ-PLILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLI--PF-LSDQVLFTRLMTEEFEVSVEVSREK 382 (442)
T ss_pred CCcEeeccCCH-HHHhcCCccCeEEcc----CCchHHHHHHHcCCCEEec--Cc-chhhHHHHHHHHHHhceeEEecccc
Confidence 35667777543 347777776333343 2336899999999999932 11 2233333333333 34566554321
Q ss_pred ---CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Q 011779 418 ---EGITPLAKNIVKLATHV-ERRLTMGKRGYER 447 (477)
Q Consensus 418 ---~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~ 447 (477)
-+.++++++|.++++++ +..+++.+++++.
T Consensus 383 ~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 383 TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 23799999999999865 4456666666543
No 162
>PLN02210 UDP-glucosyl transferase
Probab=96.13 E-value=0.094 Score=52.32 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=76.9
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|.+... ..+.+-+.+.-+.. .+.+|++ ++..... .....+.+... .++..+.++
T Consensus 268 ~~svvyvsfGS~~~~-~~~~~~e~a~~l~~---------~~~~flw~~~~~~~~--~~~~~~~~~~~----~~~g~v~~w 331 (456)
T PLN02210 268 RSSVVYISFGSMLES-LENQVETIAKALKN---------RGVPFLWVIRPKEKA--QNVQVLQEMVK----EGQGVVLEW 331 (456)
T ss_pred CCceEEEEecccccC-CHHHHHHHHHHHHh---------CCCCEEEEEeCCccc--cchhhHHhhcc----CCCeEEEec
Confidence 345777788886542 34444444444433 3345554 4432110 11122332221 134455677
Q ss_pred cCCHHHHHHhcC--EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC----CCC
Q 011779 347 TLTVAPYLAAID--VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG----KEG 419 (477)
Q Consensus 347 ~~~l~~~~~~aD--v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~----d~~ 419 (477)
..+ ..+++.++ +||.- +-=++++||+++|+|+|+- |. ..|..-....+.+ -+.|..+... .-+
T Consensus 332 ~PQ-~~iL~h~~vg~FitH------~G~nS~~Eai~~GVP~v~~--P~-~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~ 401 (456)
T PLN02210 332 SPQ-EKILSHMAISCFVTH------CGWNSTIETVVAGVPVVAY--PS-WTDQPIDARLLVDVFGIGVRMRNDAVDGELK 401 (456)
T ss_pred CCH-HHHhcCcCcCeEEee------CCcccHHHHHHcCCCEEec--cc-ccccHHHHHHHHHHhCeEEEEeccccCCcCC
Confidence 544 45788887 56622 2235899999999999932 11 2233333334443 3466665421 123
Q ss_pred HHHHHHHHHHHHhCHH
Q 011779 420 ITPLAKNIVKLATHVE 435 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~ 435 (477)
.+++++++++++.+++
T Consensus 402 ~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 402 VEEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7899999999997654
No 163
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.94 E-value=1.2 Score=39.91 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCCCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 257 REHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 257 ~~~~r~~~~~~~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
++.+++.+.. +..++-++||.-.+.=.. |.+.+....+.+.+.+ ....|++--+.- -.+.++..++.
T Consensus 150 ~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~ 218 (329)
T COG3660 150 REAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKN 218 (329)
T ss_pred HHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHh
Confidence 4555555533 455777778865543332 4444444444444433 456666665541 23445555554
Q ss_pred -cCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 335 -KKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 335 -~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.-..-+.+-+.. +-...++++||.++..-- .=..+-||.+.|+||-
T Consensus 219 ~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~ 269 (329)
T COG3660 219 NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVF 269 (329)
T ss_pred ccccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeE
Confidence 3322334444431 347778999999997643 1245789999999999
No 164
>PLN02173 UDP-glucosyl transferase family protein
Probab=95.90 E-value=0.16 Score=50.50 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=59.3
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d 417 (477)
+++.+.+|..+ .++++..++-.+-+ .+-.++++||+++|+|+|+-|. ..+..-....+.+. +.|.-+...+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~Fvt----HcGwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~v~~~~g~Gv~v~~~~ 388 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMT----HCGWNSTMEGLSLGVPMVAMPQ---WTDQPMNAKYIQDVWKVGVRVKAEK 388 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEe----cCccchHHHHHHcCCCEEecCc---hhcchHHHHHHHHHhCceEEEeecc
Confidence 57888888643 45787777433333 3345799999999999993211 22333334444432 3555543221
Q ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 418 ----EGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 418 ----~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
-+.+++++++.+++.+++ .+++.+++++
T Consensus 389 ~~~~~~~e~v~~av~~vm~~~~-~~~~r~~a~~ 420 (449)
T PLN02173 389 ESGIAKREEIEFSIKEVMEGEK-SKEMKENAGK 420 (449)
T ss_pred cCCcccHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 027999999999998643 2444444443
No 165
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.80 E-value=1.7 Score=40.77 Aligned_cols=84 Identities=11% Similarity=-0.055 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+.+.+++..+.++ .+.+++++.-... .+.+..+++.+.+.-+..+......+++..+++.+|++|-..
T Consensus 190 ~~~l~~~l~~l~~~--------~g~~v~~i~~~~~---~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~R 258 (298)
T TIGR03609 190 LLRLLRALDRLQRD--------TGAFVLFLPFQQP---QDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMR 258 (298)
T ss_pred HHHHHHHHHHHHHh--------hCCeEEEEeCCcc---hhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEec
Confidence 44555555555431 2455555543211 233444444444433334432222367888899999887655
Q ss_pred CCCCCcccHHHHHHHHcCCCEE
Q 011779 365 QAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI 386 (477)
. -.++=|+.+|+|+|
T Consensus 259 l-------H~~I~A~~~gvP~i 273 (298)
T TIGR03609 259 L-------HALILAAAAGVPFV 273 (298)
T ss_pred h-------HHHHHHHHcCCCEE
Confidence 4 35777999999999
No 166
>PLN02555 limonoid glucosyltransferase
Probab=95.78 E-value=0.28 Score=49.13 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-Cceeeec
Q 011779 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~ 414 (477)
.+++.+.++..+ ..++ .+..+||. .+--++++||+.+|+|+|+. |. ..|.......+.+. +.|+-+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fvt------H~G~nS~~Eai~~GVP~l~~--P~-~~DQ~~Na~~~~~~~gvGv~l~ 405 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFVT------HCGWNSTMEALSSGVPVVCF--PQ-WGDQVTDAVYLVDVFKTGVRLC 405 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEEe------cCCcchHHHHHHcCCCEEeC--CC-ccccHHHHHHHHHHhCceEEcc
Confidence 357777787643 4466 44666772 33346899999999999932 21 22333333333333 4555542
Q ss_pred -----CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 415 -----VGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 415 -----~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
.+.-+.+++++++.+++.+++ -+++++++++
T Consensus 406 ~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 406 RGEAENKLITREEVAECLLEATVGEK-AAELKQNALK 441 (480)
T ss_pred CCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 111237899999999997643 3455555554
No 167
>PLN02167 UDP-glycosyltransferase family protein
Probab=95.75 E-value=0.22 Score=50.11 Aligned_cols=86 Identities=13% Similarity=0.003 Sum_probs=50.4
Q ss_pred CcEEEccccCCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE-eecCCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI-VVNGTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~-v~~~~~G~l~~~ 415 (477)
++..+.++.. -..+++.. +.||.- +--++++||+++|+|+|+ .|. ..|..-.... +..-+.|..+..
T Consensus 340 ~rg~v~~w~P-Q~~iL~h~~vg~fvtH------~G~nS~~Eal~~GvP~l~--~P~-~~DQ~~na~~~~~~~g~g~~~~~ 409 (475)
T PLN02167 340 GRGLVCGWAP-QVEILAHKAIGGFVSH------CGWNSVLESLWFGVPIAT--WPM-YAEQQLNAFTMVKELGLAVELRL 409 (475)
T ss_pred cCeeeeccCC-HHHHhcCcccCeEEee------CCcccHHHHHHcCCCEEe--ccc-cccchhhHHHHHHHhCeeEEeec
Confidence 3456667753 34577664 456632 223589999999999993 121 2233333322 333345665532
Q ss_pred C-------CCCHHHHHHHHHHHHhCH
Q 011779 416 G-------KEGITPLAKNIVKLATHV 434 (477)
Q Consensus 416 ~-------d~~~~~la~~i~~ll~~~ 434 (477)
. ..+.+++++++.+++.++
T Consensus 410 ~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 410 DYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccccccCCcccHHHHHHHHHHHhcCC
Confidence 1 113789999999999754
No 168
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.73 E-value=1.8 Score=40.68 Aligned_cols=243 Identities=14% Similarity=0.043 Sum_probs=121.4
Q ss_pred chhhHHHHHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHH
Q 011779 88 GGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (477)
Q Consensus 88 G~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (477)
|.+....-|+++|.. .++++..+....+.... ...+..... .+. ...........||+|+...........
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~l--p~~~~~~~~-----~~~-~~~~~~~~~~~pdLiIsaGr~t~~~~~ 73 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRWL--PRLLPAPLR-----ALL-KPFSPALEPPWPDLIISAGRRTAPAAL 73 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhhc--cccccchHH-----Hhh-hcccccccCCCCcEEEECCCchHHHHH
Confidence 566788889999987 37888777644421000 000000000 000 000111223579999998755544433
Q ss_pred HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc-CCCCeEE---EecCCchh
Q 011779 167 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYV---VHLGNSKE 242 (477)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~v---i~ngvd~~ 242 (477)
.+.+. ... -...+|-+.+... ...+|.+++..+. +. ..+++.. .+|.++.+
T Consensus 74 ~l~r~-~gg----~~~~V~i~~P~~~-------~~~FDlvi~p~HD-------------~~~~~~Nvl~t~ga~~~i~~~ 128 (311)
T PF06258_consen 74 ALRRA-SGG----RTKTVQIMDPRLP-------PRPFDLVIVPEHD-------------RLPRGPNVLPTLGAPNRITPE 128 (311)
T ss_pred HHHHH-cCC----CceEEEEcCCCCC-------ccccCEEEECccc-------------CcCCCCceEecccCCCcCCHH
Confidence 33332 111 0122343332222 2344555554433 12 1233333 34555554
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC--CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 243 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K--g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
.... .+..+..+++-.+.+.+.+.+|.-+..- +.+...+.+.++.+..++ ....+.|..+.-..
T Consensus 129 ~l~~---------a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRTp 194 (311)
T PF06258_consen 129 RLAE---------AAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRTP 194 (311)
T ss_pred HHHH---------HHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCCc
Confidence 3322 1345556666556666777778644322 223222333333332222 33788888875211
Q ss_pred chHHHHHHHHHHHhcCCCCcEEEccc-c-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 321 QTKFESELRNYVMQKKIQDRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 321 ~~~~~~~l~~~~~~~~l~~~v~~~g~-~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
....+.|++..+. .+.+.+... . +-+..+|+.||.++.+.- + -..+.||++.|+||.
T Consensus 195 -~~~~~~L~~~~~~---~~~~~~~~~~~~nPy~~~La~ad~i~VT~D----S-vSMvsEA~~tG~pV~ 253 (311)
T PF06258_consen 195 -PEAEAALRELLKD---NPGVYIWDGTGENPYLGFLAAADAIVVTED----S-VSMVSEAAATGKPVY 253 (311)
T ss_pred -HHHHHHHHHhhcC---CCceEEecCCCCCcHHHHHHhCCEEEEcCc----c-HHHHHHHHHcCCCEE
Confidence 1244444444432 246633333 2 448899999999998754 2 245899999999999
No 169
>PLN02554 UDP-glycosyltransferase family protein
Probab=95.73 E-value=0.23 Score=50.01 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=52.3
Q ss_pred CcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce-EEeecCCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT-EIVVNGTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~-e~v~~~~~G~l~~~ 415 (477)
+|+.+.+|.. -..++ .+..+|| ..+--++++||+.+|+|+|+.|. ..|..... .+++.-+.|..++.
T Consensus 342 ~~g~v~~W~P-Q~~iL~H~~v~~Fv------tH~G~nS~~Ea~~~GVP~l~~P~---~~DQ~~Na~~~v~~~g~Gv~l~~ 411 (481)
T PLN02554 342 DIGKVIGWAP-QVAVLAKPAIGGFV------THCGWNSILESLWFGVPMAAWPL---YAEQKFNAFEMVEELGLAVEIRK 411 (481)
T ss_pred cCceEEeeCC-HHHHhCCcccCccc------ccCccchHHHHHHcCCCEEecCc---cccchhhHHHHHHHhCceEEeec
Confidence 5666777753 34567 4455566 23334689999999999993221 22333333 22333344555431
Q ss_pred -----------CCCCHHHHHHHHHHHHh-CHHHHH
Q 011779 416 -----------GKEGITPLAKNIVKLAT-HVERRL 438 (477)
Q Consensus 416 -----------~d~~~~~la~~i~~ll~-~~~~~~ 438 (477)
+.-+.++++++|.+++. +++.++
T Consensus 412 ~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 412 YWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred cccccccccccCeEcHHHHHHHHHHHhcCCHHHHH
Confidence 11237899999999996 554443
No 170
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=95.61 E-value=0.17 Score=50.56 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=53.2
Q ss_pred cEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC
Q 011779 340 RVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~ 416 (477)
++.+.+|..+ ..+++...+ || + .+--++++||+.+|+|+|+.|. ..|.......+ +.-+.|...+..
T Consensus 339 g~vv~~W~PQ-~~iL~h~~vg~Fi--t----H~G~nS~~Eal~~GVP~l~~P~---~~DQ~~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 339 GFVVPSWAPQ-AEILAHQAVGGFL--T----HCGWSSTLESVVGGVPMIAWPL---FAEQNMNAALLSDELGIAVRSDDP 408 (481)
T ss_pred CEEEeecCCH-HHHhCCcccCeeE--e----cCchhHHHHHHHcCCCEEecCc---cchhHHHHHHHHHHhCeeEEecCC
Confidence 5777787543 457777776 55 2 3334689999999999993211 22333333344 233456655431
Q ss_pred --CCCHHHHHHHHHHHHhCH
Q 011779 417 --KEGITPLAKNIVKLATHV 434 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~ 434 (477)
..+.+++++++.+++.++
T Consensus 409 ~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred CCcccHHHHHHHHHHHhcCC
Confidence 123799999999999763
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.31 E-value=0.22 Score=49.60 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=52.4
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC-
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV- 415 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~- 415 (477)
.++..+.++..+ .++++..++-.+-+. +-.++++||+.+|+|+|+.|. ..|.......+.+. +.|+-+..
T Consensus 326 ~~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~---~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 326 EEVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPM---WSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred cCCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccc---cccchHHHHHHHHHhCceEEeecC
Confidence 356677787643 457888776333332 334689999999999993211 22333333333331 23444321
Q ss_pred -CC-CCHHHHHHHHHHHHhCH
Q 011779 416 -GK-EGITPLAKNIVKLATHV 434 (477)
Q Consensus 416 -~d-~~~~~la~~i~~ll~~~ 434 (477)
.+ .+.+++++++.+++.++
T Consensus 398 ~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCCcCcHHHHHHHHHHHHhhh
Confidence 11 13789999999999754
No 172
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.20 E-value=0.13 Score=43.36 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=25.7
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhh
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 244 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (477)
..++..++.+...++.+-..+. +||.||+-|||++.+
T Consensus 134 ~~~D~~isPT~wQ~~~fP~~~r-------~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 134 EQADAGISPTRWQRSQFPAEFR-------SKISVIHDGIDTDRF 170 (171)
T ss_pred HhCCcCcCCCHHHHHhCCHHHH-------cCcEEeecccchhhc
Confidence 4566666666666665544322 689999999998864
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.17 E-value=0.23 Score=45.93 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
.++..|++...+... .....+++.+..+.+ ..|+.+++|-=-......... ....+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 445556666665554 244566666666655 557888876543210000011 22222211245
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.+.....++.+++..||.++.-+ +.+-+||+.+|+||+
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi 222 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVI 222 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceE
Confidence 666666678999999999887554 368999999999999
No 174
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.14 E-value=0.2 Score=41.52 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=69.9
Q ss_pred cEEEEEeccCCCCchhhHHH-HHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 75 KLVLLVSHELSLSGGPLLLM-ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~-~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
|+|+++.+++ ||..+... .|+..+ .|+++++|-.... + .++..|..+. ..+.+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~--------w--~WRmRg~AL~---~a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARK--------W--HWRMRGAALY---FAQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCc--------c--ccccCCCHHH---HhhccccccCCCE
Confidence 7899999887 56555433 444444 4889999854322 1 1122222221 1134445667899
Q ss_pred EEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------hhHhh--cccccccceeeehhhHHHHHHHhH
Q 011779 154 IVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVK--HLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
|++.+.....-+..+.. .. ..++.+.+.|+..-.|-. ..+.. ..-.+|.++-+|..-.+.+-+.+.
T Consensus 63 l~aTsmldLa~l~gL~p-~l--~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DL--ANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CC--CCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99998544433333332 22 125677889985433211 11111 113567777777777766665544
Q ss_pred hh
Q 011779 223 ER 224 (477)
Q Consensus 223 ~~ 224 (477)
..
T Consensus 140 ~f 141 (168)
T PF12038_consen 140 SF 141 (168)
T ss_pred HH
Confidence 33
No 175
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.14 E-value=0.3 Score=46.79 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=67.7
Q ss_pred HHHHHhhCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH
Q 011779 258 EHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 333 (477)
Q Consensus 258 ~~~r~~~~~~~-~~~~il~vGr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~ 333 (477)
+.+...++++. ++++++..|. ..+.|... ...+.++.+.+ .+.++++.|+. ..++..++..+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~-----~e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSA-----KDHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEECh-----hhHHHHHHHHH
Confidence 44556667654 4566666665 34667654 56666666543 35788899875 33444444444
Q ss_pred hcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 334 ~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
..+ ...+.+.|.. .++..+++.||++|-+-. . .+==|.|.|+|+|+.
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-----G--p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-----G--LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-----H--HHHHHHHcCCCEEEE
Confidence 332 1223366753 789999999999996543 2 344588999999944
No 176
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.84 E-value=0.21 Score=46.35 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=60.4
Q ss_pred eEEEEEeecccCCC--HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 271 LLFAIINSVSRGKG--QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 271 ~~il~vGrl~~~Kg--~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
.+++..|.-.+.|. .+...+.++.+.+ .+++++++|+. +..+..+++.+..+-...+.+.|..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~ 188 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTS 188 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCC
Confidence 34444444444454 4566676666654 37889999875 3444455555444222334556653
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.++..+++.||++|-+-. |. +--|.+.|+|+|+.
T Consensus 189 l~e~~~li~~~~l~I~~Ds------g~-~HlA~a~~~p~i~l 223 (279)
T cd03789 189 LRELAALLARADLVVTNDS------GP-MHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHHHHhCCEEEeeCC------HH-HHHHHHcCCCEEEE
Confidence 788999999999996543 33 44457999999943
No 177
>PLN02207 UDP-glycosyltransferase
Probab=94.78 E-value=0.81 Score=45.75 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=48.7
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeec-
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHP- 414 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~- 414 (477)
+++.+.+|..+ .++++...+ || + .+--++++||+.+|+|+|+- |. ..+.......+.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~Fv--T----H~GwnS~~Eai~~GVP~l~~--P~-~~DQ~~Na~~~~~~~gvGv~~~~ 401 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFV--S----HCGWNSIVESLWFGVPIVTW--PM-YAEQQLNAFLMVKELKLAVELKL 401 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceee--e----cCccccHHHHHHcCCCEEec--Cc-cccchhhHHHHHHHhCceEEEec
Confidence 56666777533 346666555 55 3 22236899999999999932 11 2233333333322 33454221
Q ss_pred -----CCC-CCHHHHHHHHHHHHh
Q 011779 415 -----VGK-EGITPLAKNIVKLAT 432 (477)
Q Consensus 415 -----~~d-~~~~~la~~i~~ll~ 432 (477)
..+ .+.+++.++|.+++.
T Consensus 402 ~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 402 DYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccccccCCcccHHHHHHHHHHHHh
Confidence 011 127899999999996
No 178
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.35 E-value=0.84 Score=43.32 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
+++++++..|.-.+.|.. +...+.++.+.+ .+.++++.|+++ .+++..++..+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 355666677755567765 356666666543 357788875542 23344445444332 235567
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+-. . .+==|.|.|+|+|+.
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS-----g--p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT-----G--LTHLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC-----h--HHHHHHHcCCCEEEE
Confidence 53 778889999999996543 2 344477899999943
No 179
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.35 E-value=1.2 Score=42.34 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=58.5
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.++++++..|.-...|... ...+.+..+.+ .+.++++.|+++ .+.+..++..+.. .++.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 3455544445434556543 45666665533 356777763341 2333344443322 3466777
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+-. ..+-=|-|+|+|+|+.
T Consensus 241 ~~sL~elaali~~a~l~I~nDS-------Gp~HlA~A~g~p~val 278 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT-------GLSHLTAALDRPNITL 278 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------cHHHHHHHhCCCEEEE
Confidence 53 788999999999996543 2355589999999943
No 180
>PLN00164 glucosyltransferase; Provisional
Probab=94.00 E-value=1.9 Score=43.39 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=55.9
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG--- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~--- 416 (477)
+.+.++.. -..+++..++-.+-+ .+--++++||+++|+|+|+-+. ..|..-....+ +.-+.|+.+...
T Consensus 341 ~~v~~w~P-Q~~iL~h~~vg~fvt----H~GwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~~~~~~gvG~~~~~~~~~ 412 (480)
T PLN00164 341 LVWPTWAP-QKEILAHAAVGGFVT----HCGWNSVLESLWHGVPMAPWPL---YAEQHLNAFELVADMGVAVAMKVDRKR 412 (480)
T ss_pred eEEeecCC-HHHHhcCcccCeEEe----ecccchHHHHHHcCCCEEeCCc---cccchhHHHHHHHHhCeEEEecccccc
Confidence 55557643 346777777522223 2223689999999999993211 22333333333 223456655321
Q ss_pred --CCCHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Q 011779 417 --KEGITPLAKNIVKLATHVE-RRLTMGKRGYE 446 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~ 446 (477)
..+.++++++|.+++.+++ ..+++.+++++
T Consensus 413 ~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 413 DNFVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0137999999999997643 24455555444
No 181
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=93.77 E-value=0.56 Score=42.58 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCCCeEEEEEeecccCCCHHH--HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH--HHHHHHHHHhcCCCCcEE
Q 011779 267 RNEDLLFAIINSVSRGKGQDL--FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF--ESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 267 ~~~~~~il~vGrl~~~Kg~~~--ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~--~~~l~~~~~~~~l~~~v~ 342 (477)
.+++++++..|.-.+.|.... ..+.+..+ .+ ....++++|+. .. .+..+...+...- ..+.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l----~~-----~~~~vvl~g~~-----~~~~~~~~~~~~~~~~~-~~~~ 167 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERL----KE-----RGYRVVLLGGP-----EEQEKEIADQIAAGLQN-PVIN 167 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHH----CC-----CT-EEEE--SS-----HHHHHHHHHHHHTTHTT-TTEE
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHH----Hh-----hCceEEEEccc-----hHHHHHHHHHHHHhccc-ceEe
Confidence 355677777777667777644 44444444 32 23788899987 33 3333344443321 2577
Q ss_pred Ecccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 343 ~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+.|.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+
T Consensus 168 ~~~~~~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 168 LAGKTSLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVA 207 (247)
T ss_dssp ETTTS-HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEE
T ss_pred ecCCCCHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEE
Confidence 77763 778899999999996543 235558999999993
No 182
>PLN02534 UDP-glycosyltransferase
Probab=93.55 E-value=2.2 Score=43.06 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=31.1
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.++.+.|+..+ ..+++..++ || ..+-.++++||+++|+|+|+
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fv------tH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFL------THCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEE------ecCccHHHHHHHHcCCCEEe
Confidence 46777787644 567888887 55 33345799999999999993
No 183
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.44 E-value=1.2 Score=42.92 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=65.8
Q ss_pred HHHHhhCCC-CCCeEEEEEeec-ccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 259 HVRESLGVR-NEDLLFAIINSV-SRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 259 ~~r~~~~~~-~~~~~il~vGrl-~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
.+...+++. +++++++..|.- .+.|.. +.+.+.++.+.+ .++++++.|+. .+++..++..+.
T Consensus 169 ~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~-----~e~~~~~~i~~~ 234 (348)
T PRK10916 169 ETCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSA-----KDHEAGNEILAA 234 (348)
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCH-----HhHHHHHHHHHh
Confidence 344555543 345666666653 356654 345555555533 46788888875 344444554444
Q ss_pred cCCC--Cc-EEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 335 KKIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 335 ~~l~--~~-v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.+-+ .+ +.+.|.. .++..+++.||++|-+-. - .+==|.|.|+|+|+.
T Consensus 235 ~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-----G--p~HlAaA~g~P~val 286 (348)
T PRK10916 235 LNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-----G--LMHVAAALNRPLVAL 286 (348)
T ss_pred cccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-----h--HHHHHHHhCCCEEEE
Confidence 3211 12 4556653 788899999999996543 2 344588999999944
No 184
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=93.41 E-value=0.73 Score=44.47 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=61.9
Q ss_pred CCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 269 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++++++..|.-.+.|... ...+.++.+.+ .+.+++++|+..+ ...+..++..+.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e---~e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA---------RGYEVVLTSGPDK---DDLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEcCCCh---HHHHHHHHHHHhcCCCccccccCC
Confidence 467777777766777654 55565555533 4678888876421 112223444433322233556675
Q ss_pred c--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 347 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 347 ~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
. .++..+++.||++|-+-. . .+-=|.|.|+|+|+
T Consensus 251 ~sL~el~ali~~a~l~v~nDS-----G--p~HlAaA~g~P~v~ 286 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS-----A--PAHIAAAVNTPLIC 286 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC-----H--HHHHHHHcCCCEEE
Confidence 3 889999999999996543 2 34447899999993
No 185
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=92.75 E-value=1.4 Score=44.70 Aligned_cols=146 Identities=9% Similarity=0.012 Sum_probs=76.0
Q ss_pred CCeEEEEEeeccc-----CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC--CCCcE
Q 011779 269 EDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK--IQDRV 341 (477)
Q Consensus 269 ~~~~il~vGrl~~-----~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~v 341 (477)
+..+++..|.... .+-...+..++..+ +++.|++.=.+.. ... ..+... -.++|
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~-----------~~~~FiW~~~~~~-----~~~---~~~~~~~~~~~nV 337 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESL-----------QGVTFLWKYRPDD-----SIY---FPEGLPNRGRGNV 337 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhC-----------CCceEEEEecCCc-----chh---hhhcCCCCCcCce
Confidence 3566667787753 33334444454432 5677666555421 111 122111 13478
Q ss_pred EEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 342 HFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
.+.+|..+..-+++. ..+|| + .-|++ +++||+.+|+|+|+.|. -.|..-....+.+...|.+....|..
T Consensus 338 ~~~~W~PQ~~lll~H~~v~~Fv--T---HgG~n-St~E~~~~GvP~v~~Pl---f~DQ~~Na~~i~~~g~~~v~~~~~~~ 408 (496)
T KOG1192|consen 338 VLSKWAPQNDLLLDHPAVGGFV--T---HGGWN-STLESIYSGVPMVCVPL---FGDQPLNARLLVRHGGGGVLDKRDLV 408 (496)
T ss_pred EEecCCCcHHHhcCCCcCcEEE--E---CCccc-HHHHHHhcCCceecCCc---cccchhHHHHHHhCCCEEEEehhhcC
Confidence 888886554433322 23444 3 23443 55999999999993211 22333344444433334444433322
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Q 011779 420 ITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
.+.+.+++..++.+++..+...+
T Consensus 409 ~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 409 SEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cHHHHHHHHHHHcChHHHHHHHH
Confidence 34488888888888775554433
No 186
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=92.57 E-value=4.5 Score=36.96 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.8
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
..++..+++.+|++|-... -..+=|+++|+|+|
T Consensus 248 ~~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i 280 (286)
T PF04230_consen 248 PDELLELISQADLVISMRL-------HGAILALSLGVPVI 280 (286)
T ss_pred HHHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEE
Confidence 3788899999999997765 25677999999999
No 187
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.44 E-value=2.2 Score=40.98 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=61.1
Q ss_pred CCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.++++..|.-.+.|.. +...+.++.+.+ .+..++++|+..+ ...+..++..+..+-+..+.+.|
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~---------~~~~ivl~g~p~~---~e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHA---------RGYEVVLTSGPDK---DELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHh---------CCCeEEEecCCCH---HHHHHHHHHHhhCCCCcccccCC
Confidence 345666666665566654 445555555533 3578888886421 12223344433333222345677
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+
T Consensus 248 ~~sL~el~ali~~a~l~Vs~DS-------Gp~HlAaA~g~p~v~ 284 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVDS-------VPMHMAAALGTPLVA 284 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEE
Confidence 53 789999999999996543 235558999999994
No 188
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=91.88 E-value=13 Score=35.91 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce
Q 011779 324 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT 401 (477)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~ 401 (477)
+..-.+.++....-..++.+.... +++...++++|+.|-.-. -.++=||+.|+|+|+..|-. ..-++.
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~Y~~---K~~~l~ 320 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIAYDP---KVRGLM 320 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEeecH---HHHHHH
Confidence 344444444444333677666542 456778999998885443 35777999999999321111 111232
Q ss_pred EEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHH
Q 011779 402 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLT 439 (477)
Q Consensus 402 e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~ 439 (477)
+-+ |..++..+..+.+.+.+.++..+.+. +++.+++
T Consensus 321 ~~~--gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 321 QDL--GLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred HHc--CCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 222 44556666666568888888888777 4554444
No 189
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=91.48 E-value=0.57 Score=39.78 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=51.9
Q ss_pred hhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeec---ccccchhhHhhcccccccceeeehhhHHHHH
Q 011779 143 ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEM---RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (477)
..+.++.+||+|++..+.+... +..+...+... .++++..+.++ +..|.. +..|..++.+....+.+.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~-~~p~~tvvTD~~~~H~~W~~-------~~~D~y~Vase~~~~~l~ 153 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLP-NIPVVTVVTDFDTVHPFWIH-------PGVDRYFVASEEVKEELI 153 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhccc-CCcEEEEEcCCCCCCcCeec-------CCCCEEEECCHHHHHHHH
Confidence 3555679999999999887666 55444443221 13443333332 222222 567888888888777766
Q ss_pred HHhHhhhccCCCCeEEEecC
Q 011779 219 NRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ng 238 (477)
..|++.+++.+..-+
T Consensus 154 -----~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 154 -----ERGIPPERIHVTGIP 168 (169)
T ss_pred -----HcCCChhHEEEeCcc
Confidence 368999988886543
No 190
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=89.40 E-value=0.95 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=34.5
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG 189 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 189 (477)
+..+.+...++.||||.|+..+.......+..+. .+.+.+++-|...+
T Consensus 40 pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~--mGlktVfTDHSLfg 87 (90)
T PF08288_consen 40 PLLRNILIRERIDIVHGHQAFSTLCHEAILHART--MGLKTVFTDHSLFG 87 (90)
T ss_pred HHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHh--CCCcEEeecccccc
Confidence 3346777789999999999777766665555544 44678888887644
No 191
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=89.31 E-value=5.3 Score=34.45 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhh-hcCcEEEeccc---hhhHHHhcCCcEEEEcCc-c
Q 011779 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAKG---QETINTALKADLIVLNTA-V 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~---~~~~~~~~~~DiV~~~~~-~ 160 (477)
|--..+..|++.|.++ |+.|.+-+........ ....+. ...+...|+.. .+.+.+..+||+++.... .
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~-----~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtEl 106 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREM-----ARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETEL 106 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHH-----HHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES---
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHH-----HHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEcccc
Confidence 4447899999999987 7777766644332111 111111 11223334332 367778889999987653 2
Q ss_pred hhhHHHHHhhhCCCccccceeeeeeec-ccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEec
Q 011779 161 AGKWLDAVLKEDVPRVLPNVLWWIHEM-RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (477)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~h~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~n 237 (477)
-...+..+.+.++|.....--..-... ....+.......+..++.+.+.+....+.+. .+|.+.+++.+..|
T Consensus 107 WPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 107 WPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHVTGN 179 (186)
T ss_dssp -HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE---
T ss_pred CHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEEeCc
Confidence 223344444444442211100000000 0112333455667888999999988888776 67888889999876
No 192
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.24 E-value=0.78 Score=34.78 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE---cccc-C--CHHHHHHhcCEEEEcCCCC-CCcccHHHHHHHHcCC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKT-L--TVAPYLAAIDVLVQNSQAW-GECFGRITIEAMAFQL 383 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~---~g~~-~--~l~~~~~~aDv~v~pS~~~-~E~~g~~~lEAma~G~ 383 (477)
++|+|+-. .....+++.++++|.. .+.+ -|.. . .++..+..+|++|++...- ....-.+--+|-..|+
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~-~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK-LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE-EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 57788732 4678889999998864 3344 1222 3 3888899999999887621 1112234566788899
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
|++
T Consensus 77 p~~ 79 (97)
T PF10087_consen 77 PII 79 (97)
T ss_pred cEE
Confidence 999
No 193
>PRK09739 hypothetical protein; Provisional
Probab=89.02 E-value=1.4 Score=38.58 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=31.9
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+||||+++..+...+|.. ..+..+++.+.+.|++|.++-..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 5678999998766555544 56777888899999999988743
No 194
>PLN03015 UDP-glucosyl transferase
Probab=88.18 E-value=9.1 Score=38.34 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=45.0
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeec----C
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHP----V 415 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~----~ 415 (477)
+.+.+|..+ .++++...+-.+-+ .+--++++||+++|+|+|+-|. ..|..-....+ +.-..|.-+. .
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvt----H~GwnS~~Eai~~GvP~v~~P~---~~DQ~~na~~~~~~~gvg~~~~~~~~~ 408 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLS----HCGWSSVLESLTKGVPIVAWPL---YAEQWMNATLLTEEIGVAVRTSELPSE 408 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEe----cCCchhHHHHHHcCCCEEeccc---ccchHHHHHHHHHHhCeeEEecccccC
Confidence 455676533 34566655522223 2233689999999999993211 12222222222 1223343332 1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 011779 416 GKEGITPLAKNIVKLAT 432 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~ 432 (477)
+....+++++++++++.
T Consensus 409 ~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 409 KVIGREEVASLVRKIVA 425 (470)
T ss_pred CccCHHHHHHHHHHHHc
Confidence 11127899999999995
No 195
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=88.15 E-value=1.7 Score=35.23 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~ 142 (477)
.=+..++++|+++||||.+.+... +.......|+...++...
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESSSC
T ss_pred HHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEecCC
Confidence 457899999999999999888543 345557778888776543
No 196
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=87.97 E-value=2.2 Score=36.19 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=46.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhH-HHhcCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~ 151 (477)
+..+|++++..-+.|| --.-+++.|.++|++|.|+...+..............+...|+++......... .....+
T Consensus 24 ~~~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 3457888886655554 567789999999999999664443332222223344556677777654433222 122356
Q ss_pred cEEEE
Q 011779 152 DLIVL 156 (477)
Q Consensus 152 DiV~~ 156 (477)
|+|+=
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66653
No 197
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=86.09 E-value=2.8 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.8
Q ss_pred EEEEEeccCCCCch-------hhHHHHHHHHHHhCC-cEEEEEec
Q 011779 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-TKVNWITI 112 (477)
Q Consensus 76 ~Il~v~~~~~~gG~-------~~~~~~l~~~L~~~G-~~V~v~~~ 112 (477)
||+++.|.+..+|. +.-+..++..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58888887665553 234678888999999 89999853
No 198
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=84.38 E-value=9.6 Score=38.24 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
....+.++.+..++.|.- .+...-.+.||+.+|| |||+++.. .-. ..+.+.-.+.++.++..+ +..+
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~--~lp---f~~~~d~~~fSV~v~~~~--v~~~--- 402 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGI--QLP---FGDVLDWTEFSVFVPEKD--VPEL--- 402 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCc--ccC---cCCCccceEEEEEEEHHH--hhhH---
Confidence 567888999999999998 7777779999999997 88844331 222 234443345667776333 5555
Q ss_pred HHHHHh--CHHHHHHHHHHHHHHHHHhcCHH
Q 011779 427 IVKLAT--HVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 427 i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
|.+.+. ..+....|.++....+...|-+.
T Consensus 403 ~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 403 IKNILLSIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 333333 34445666666665555555444
No 199
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.11 E-value=40 Score=32.13 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=77.8
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc------CCHH----HHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVA----PYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~----~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
.+-+++++|.| +.....-+...+.|. .+|.+.... +++. .+...+|+++..|....-+.|....
T Consensus 173 ~~k~vLvIGaG-----em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYS-----EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEccc-----HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 56799999999 666666666666776 467776653 2232 5567899999863211344566666
Q ss_pred HHHHcCCC-EEeeccccccccCCCceEE--eecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 377 EAMAFQLP-VLLQKCLYQGTAAGGTTEI--VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 377 EAma~G~P-vI~~~~~~~~~~~gg~~e~--v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
|.+.. .+ -+ .-|..-++++ +....+-.+++ ++++.+.+.+- ...|++....+...+
T Consensus 247 ~~~~~-~~~r~-------~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~n---~~~R~~~~~~ae~iI----- 305 (338)
T PRK00676 247 ESLAD-IPDRI-------VFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQKH---LQCRKEVNNKHKLSL----- 305 (338)
T ss_pred HHHhh-ccCcE-------EEEecCCCCCccccccCCcEEEE-----hHHHHHHHHHH---HHHHHHHHHHHHHHH-----
Confidence 65543 32 23 2344444443 22233344554 66666666543 334455444454444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011779 454 EHHMAERIAVVLKEVLK 470 (477)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (477)
+..+.++.+.|++-.+
T Consensus 306 -~~~~~~~~~~~~~~~~ 321 (338)
T PRK00676 306 -REAAYKQWESYEKKLS 321 (338)
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 3567777777776544
No 200
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.04 E-value=4.7 Score=32.10 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEE
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEE
Confidence 678999999999998887 6766666777889999999
No 201
>PRK06988 putative formyltransferase; Provisional
Probab=82.95 E-value=5.4 Score=37.66 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=46.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh-HHhhhhhhhhhcCcEEEeccch-----hhHHH
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKGQ-----ETINT 147 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ 147 (477)
||||+|+... .+.....+.|.+.|++|..+....+..... ....+.......|++++..... ....+
T Consensus 2 ~mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAYH-------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeCc-------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 4788888632 355666677777899987665443222111 1123455566778888653221 23456
Q ss_pred hcCCcEEEEcC
Q 011779 148 ALKADLIVLNT 158 (477)
Q Consensus 148 ~~~~DiV~~~~ 158 (477)
..+||++++-.
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 68999998753
No 202
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=82.11 E-value=20 Score=29.41 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=56.2
Q ss_pred CeEEEEEeecccCCCHHHHHHHH--HHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSF--YESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~--~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g- 345 (477)
.-+++.+|.-. .|.|+.+. ....+.+++. .=.+|+| +|.|... ..+......+. +.+...|
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~----G~~kLiiQ~Grg~~~---~~d~~~~~~k~----~gl~id~y 68 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKR----GFTKLIIQIGRGQPF---FGDPIDLIRKN----GGLTIDGY 68 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHc----CccEEEEEecCCccC---CCCHHHhhccc----CCeEEEEE
Confidence 34677778632 77777765 2344444442 2234444 6776211 11112222222 2344444
Q ss_pred -ccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 346 -KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 346 -~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+...+.++++.||+++. .+-.-+++|-+..|+|.|
T Consensus 69 ~f~psl~e~I~~AdlVIs------HAGaGS~letL~l~KPli 104 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVIS------HAGAGSCLETLRLGKPLI 104 (170)
T ss_pred ecCccHHHHHhhccEEEe------cCCcchHHHHHHcCCCEE
Confidence 45889999999999993 223358999999999998
No 203
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=81.85 E-value=1.1 Score=41.95 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=44.9
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeeccccccccCC--CceEEeecCCceeeecCCCCCHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQGTAAG--GTTEIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~~~~g--g~~e~v~~~~~G~l~~~~d~~~~~la 424 (477)
.+..+.|+.+..++.|.- ...+..-++|||++|| ||| .++.- ...+++.-....+.++..+ +.++-
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVi-------i~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~ 296 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVI-------ISDDYVLPFEDVLDWSRFSVRVPEAD--LPELP 296 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEE-------ecCcccCCcccccCHHHEEEEECHHH--HHHHH
Confidence 457788999999999875 4447788999999997 777 33321 2245554445566666544 44444
Q ss_pred HHH
Q 011779 425 KNI 427 (477)
Q Consensus 425 ~~i 427 (477)
+.|
T Consensus 297 ~iL 299 (302)
T PF03016_consen 297 EIL 299 (302)
T ss_pred HHH
Confidence 443
No 204
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.69 E-value=9.2 Score=33.42 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=45.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc--ch-------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~--~~------- 142 (477)
||||++++.. ....+..+.+++.+.+ ++|.++.+..+.. .........|++++... ..
T Consensus 1 m~ki~vl~sg-----~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 69 (200)
T PRK05647 1 MKRIVVLASG-----NGSNLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFD 69 (200)
T ss_pred CceEEEEEcC-----CChhHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhH
Confidence 4788888843 3356778888888765 6676654443321 12444567788876522 11
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++..
T Consensus 70 ~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 70 AALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHhCcCEEEhHH
Confidence 2334567999998853
No 205
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=81.63 E-value=15 Score=32.40 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=50.7
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHHhcCEEEEcCCC-------CCC-cccHHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 377 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~-------~~E-~~g~~~lE 377 (477)
.+.++.++...+....++...+.+..+++ |....+...-..++..+.+..||++++|--. +.+ ++.-.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 45688888876654456777777778888 7632222211235678889999999998531 011 22223455
Q ss_pred HHHcCCCEE
Q 011779 378 AMAFQLPVL 386 (477)
Q Consensus 378 Ama~G~PvI 386 (477)
+...|+|++
T Consensus 110 ~~~~g~~i~ 118 (212)
T cd03146 110 ALERGVVYI 118 (212)
T ss_pred HHHCCCEEE
Confidence 666899999
No 206
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=77.55 E-value=67 Score=30.62 Aligned_cols=310 Identities=14% Similarity=0.124 Sum_probs=169.0
Q ss_pred CchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcc-hhh
Q 011779 87 SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV-AGK 163 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~-~~~ 163 (477)
.|...-+.-|+..|++.. ++|+++......... -...+...++++... . ......|+++=-+.. ...
T Consensus 18 NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~-----~~~~~~~~~~~~~~~---~--~~~~~lDVlIEmg~ql~~~ 87 (364)
T PF10933_consen 18 NGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIP-----AALMLDLLDVPLVDF---D--DAIDELDVLIEMGAQLDPE 87 (364)
T ss_pred hchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCC-----cccccccCCCceecH---H--HhcccCCEEEEccCccCHH
Confidence 687788888999998766 788888854332110 111223334444322 1 223478999876633 344
Q ss_pred HHHHHhhhCCCccccceeeeeeecccc------cchhhHhhcc--cccccceeeeh---hhHHHHHHHhHhhhccCCCCe
Q 011779 164 WLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHL--PLVAGAMIDSH---VTAEYWKNRTRERLRIKMPDT 232 (477)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~~~~~~~~--~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~i 232 (477)
++..+...+ .|++....+...- .+.+.....+ ...|.+...-. +...++.- +....+
T Consensus 88 ~~~~~~~~G-----~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~~~yD~VW~lPq~~~~~~~yl~~-------l~r~Pv 155 (364)
T PF10933_consen 88 WLDYMRARG-----GKVVSYRCGNDYVMDIESMLFNKPSGHLFNGAPYDEVWTLPQFENTCAPYLET-------LHRCPV 155 (364)
T ss_pred HHHHHHHcC-----CeEEEEeCCchHHHHhhHHhcCCCCCccCCCCCCceeEeccchhhhchHHHHH-------HhcCCc
Confidence 555444433 4666666553211 1221111111 23344332211 22233332 122457
Q ss_pred EEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC---CCeEEEEEeecccCCCH---HHHHHHHHHHHHHHHhhccCc
Q 011779 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQ---DLFLHSFYESLELIKEKKLEV 306 (477)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~il~vGrl~~~Kg~---~~ll~a~~~l~~~~~~~~~~~ 306 (477)
.++|.--++-+++..... .++-..++|-.+ .+.+=+|=-++.-.|.- -+++|++-+- .
T Consensus 156 ~~vP~iWsP~F~~~~~~~------l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~----------~ 219 (364)
T PF10933_consen 156 RVVPHIWSPRFLDQRIAQ------LPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRA----------D 219 (364)
T ss_pred eeeCccCCchhHHHHHHh------hhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHh----------C
Confidence 888876555554332111 011112344333 22333344455556652 3344444432 2
Q ss_pred Cc-eEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEccccCCHHHHHHh-cCEEEEcCCCCCCcccHHHHHHHHcC
Q 011779 307 PS-VHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKTLTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMAFQ 382 (477)
Q Consensus 307 ~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~l~~~~~~-aDv~v~pS~~~~E~~g~~~lEAma~G 382 (477)
|+ +..+.+-....- .....+..++..+.+ .++..|.|. -+++.+++. .|++| |.-|.-+.-..-.||+.-|
T Consensus 220 P~~v~~~~V~Nt~~~--ke~~~F~~f~~~ldlvr~gkasfegR-~~~p~fla~~tD~Vv--SHqWeN~lNYlY~daLygg 294 (364)
T PF10933_consen 220 PDAVEHVYVTNTYHL--KEHPTFVNFANSLDLVRDGKASFEGR-FDFPDFLAQHTDAVV--SHQWENPLNYLYYDALYGG 294 (364)
T ss_pred hhhcceEEEecchhh--hcCHHHHHHHHhhHHhhcCeeEEeee-cChHHHHHhCCCEEE--eccccchhhHHHHHHHhcC
Confidence 43 455555543111 234455566665544 456788886 466777665 78877 3323445666789999999
Q ss_pred CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 383 LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
=|.| -...++. +.|+..+..| ..+=++++.+.+. ++...+...+++++.+ ..++.++
T Consensus 295 YPLV------------HNS~~l~--d~GYYY~~fD--~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l-~~~~p~n 352 (364)
T PF10933_consen 295 YPLV------------HNSPLLK--DVGYYYPDFD--AFEGARQLLRAIREHDADLDAYRARARRLL-DRLSPEN 352 (364)
T ss_pred CCcc------------cCcchhc--ccCcCCCCcc--HHHHHHHHHHHHHHccccHHHHHHHHHHHH-HhhCCCC
Confidence 9999 4455663 4899999887 8999999988887 5566777888888766 4455543
No 207
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.54 E-value=52 Score=31.54 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch---------HHHHHHHHHHHhcCCCC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---------KFESELRNYVMQKKIQD 339 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~---------~~~~~l~~~~~~~~l~~ 339 (477)
+...++++|- ..-.+-+.+++.++.+++ -.++++.-|.-.++.. .-.+.+++..++.|++
T Consensus 99 ~~~l~vIAGP-CsIEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~- 167 (352)
T PRK13396 99 NHPVVVVAGP-CSVENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG- 167 (352)
T ss_pred CCeEEEEEeC-CcccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc-
Confidence 4445556674 456788899999999876 3566666554333211 2345566667788875
Q ss_pred cEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH-HcCCCEEeeccc
Q 011779 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLLQKCL 391 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~~~~~ 391 (477)
-+.=.-..+++..+...+|++=.+|+. -..|+ ++++. ..|+||+.+...
T Consensus 168 ~~tev~d~~~v~~~~~~~d~lqIga~~-~~n~~--LL~~va~t~kPVllk~G~ 217 (352)
T PRK13396 168 IITEVMDAADLEKIAEVADVIQVGARN-MQNFS--LLKKVGAQDKPVLLKRGM 217 (352)
T ss_pred EEEeeCCHHHHHHHHhhCCeEEECccc-ccCHH--HHHHHHccCCeEEEeCCC
Confidence 121111225555555569999999973 44444 45554 679999954333
No 208
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=76.86 E-value=74 Score=31.23 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=59.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHH---H-HHHHHcCCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI---T-IEAMAFQLP 384 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~---~-lEAma~G~P 384 (477)
.++.|++.. .+.-++++++++. ..+ ..+++..++..+|+++..+. .+-++. . -+|+.-...
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~----~~~-~l~el~~~l~~~DvVissTs---a~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGA----EAV-ALEELLEALAEADVVISSTS---APHPIITREMVERALKIRKR 267 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCC----eee-cHHHHHHhhhhCCEEEEecC---CCccccCHHHHHHHHhcccC
Confidence 466777765 4556777777751 111 12889999999999987764 333333 3 334444444
Q ss_pred EEeeccccccccCCCceEEeec---CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 385 VLLQKCLYQGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
.+ ..|.+-++++-.+ -.+-++++ ++++.....+- -+.|++....+...
T Consensus 268 ~l-------ivDiavPRdie~~v~~l~~v~l~~-----iDDL~~iv~~n---~~~R~~~~~~ae~i 318 (414)
T COG0373 268 LL-------IVDIAVPRDVEPEVGELPNVFLYT-----IDDLEEIVEEN---LEARKEEAAKAEAI 318 (414)
T ss_pred eE-------EEEecCCCCCCccccCcCCeEEEe-----hhhHHHHHHHh---HHHHHHHHHHHHHH
Confidence 45 5577666665322 12346666 44454444432 23344444444433
No 209
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=76.15 E-value=6.5 Score=34.20 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+||+......-. .-+..|+++|++.||+|.|+.+....
T Consensus 1 M~ILlTNDDGi~a---~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGIDA---PGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-TTS---HHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCCCC---HHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 7888877653321 45889999998889999999976544
No 210
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=75.54 E-value=6.8 Score=31.40 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=30.6
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcE-EEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTK-VNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~-V~v~~~~~ 114 (477)
||++++....+.|+.. +...++++.+.+.||+ +.|+...+
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 6788888776664444 7789999999999998 47777444
No 211
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=74.62 E-value=34 Score=30.72 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=51.4
Q ss_pred EEEEEecCC--CcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCccc-----------HHHH
Q 011779 310 HAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG-----------RITI 376 (477)
Q Consensus 310 ~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g-----------~~~l 376 (477)
+++++..-. .....|.+..++..+++|.. +..+-..++..+.+..+|+++++- .+.|- -.+-
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~G---Gnt~~l~~~l~~~gl~~~l~ 107 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGG---GNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECC---ccHHHHHHHHHHCCcHHHHH
Confidence 445544322 22335677788888888864 444444466778899999877664 33332 3366
Q ss_pred HHHHcCCCEEeeccccccccCCC
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGG 399 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg 399 (477)
|+...|+|++ ++..|.
T Consensus 108 ~~~~~G~~~~-------G~SAGA 123 (233)
T PRK05282 108 EAVKNGTPYI-------GWSAGA 123 (233)
T ss_pred HHHHCCCEEE-------EECHHH
Confidence 8889999999 887776
No 212
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=74.17 E-value=93 Score=30.74 Aligned_cols=72 Identities=4% Similarity=-0.064 Sum_probs=41.6
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeec
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
.+.|+... .+..+.++++++- .....+ +++...+..+|+++..+. -+-++.- ..+.-+.|.+
T Consensus 207 ~I~V~nRt-------~~ra~~La~~~~~---~~~~~~-~~l~~~l~~aDiVI~aT~---a~~~vi~-~~~~~~~~~~--- 268 (414)
T PRK13940 207 QIMLANRT-------IEKAQKITSAFRN---ASAHYL-SELPQLIKKADIIIAAVN---VLEYIVT-CKYVGDKPRV--- 268 (414)
T ss_pred EEEEECCC-------HHHHHHHHHHhcC---CeEecH-HHHHHHhccCCEEEECcC---CCCeeEC-HHHhCCCCeE---
Confidence 56666664 2334555555431 122222 567888999999998876 2223322 3344578888
Q ss_pred cccccccCCCceEE
Q 011779 390 CLYQGTAAGGTTEI 403 (477)
Q Consensus 390 ~~~~~~~~gg~~e~ 403 (477)
.-|.+-++++
T Consensus 269 ----~iDLavPRdi 278 (414)
T PRK13940 269 ----FIDISIPQAL 278 (414)
T ss_pred ----EEEeCCCCCC
Confidence 6677655554
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.15 E-value=17 Score=26.03 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhCCcEEEEEecCCCCC---hhhHHhhhhhhhhhcCcEEEe
Q 011779 90 PLLLMELAFLLRGVGTKVNWITIQKPSE---EDEVIYSLEHKMWDRGVQVIS 138 (477)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~---~~~~~~~~~~~~~~~g~~v~~ 138 (477)
...-.++|..|.+.|.+|+++...+.-. +......+...+...|++++.
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 3678899999999999999999554332 233334455566777887754
No 214
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=73.95 E-value=4.8 Score=40.90 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=27.3
Q ss_pred EEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 77 VLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 77 Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+.+.+.. |+.. ..+..++++|+++||+|+++++.
T Consensus 23 Il~~~P~~--~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 23 ILAVFPTP--AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred EEEEcCCC--CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 77776543 3334 67889999999999999999864
No 215
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=73.79 E-value=40 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=19.7
Q ss_pred CchhhHHHHHHHHH--HhCCcEEEEEecCCCC
Q 011779 87 SGGPLLLMELAFLL--RGVGTKVNWITIQKPS 116 (477)
Q Consensus 87 gG~~~~~~~l~~~L--~~~G~~V~v~~~~~~~ 116 (477)
||--..+..|.+.+ ....++..+++..+..
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~ 39 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQ 39 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcc
Confidence 45446788888888 2345777777765544
No 216
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=73.54 E-value=47 Score=30.65 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=70.7
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCcchHHHHHHHHHHHhcCCCC-cEEEccccC
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTL 348 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~~ 348 (477)
..+++++.=.+.|+++.+++.++ .+|. +.+-..|.|. ...-....+.++.|+.- .|-|-|.-+
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak-----------~~p~~~~~g~~g~g~----~~hl~~~~l~~~~G~~~~~Vpy~G~~~ 143 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAK-----------ANPGKLTFGSSGPGS----SDHLAAALLAKAAGIKFTHVPYDGGAE 143 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHH-----------CSCCC-EEEESSTTS----HHHHHHHHHHHHHT---EEEE-SSHHH
T ss_pred ceEEEEeCCCccccHHHHHHHHH-----------hCCCCeEEEecCCCc----hHHHHHHHHHHHhCCceEEEEeCCccH
Confidence 34566777778899999998887 3343 4444444442 22223344555666642 233333324
Q ss_pred CHHHHHHh-cCEEEEcCCCCCCcccHHHHHHHHcCCC-EEee----------ccccccccCCCceEEeecCCceeeecCC
Q 011779 349 TVAPYLAA-IDVLVQNSQAWGECFGRITIEAMAFQLP-VLLQ----------KCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 349 ~l~~~~~~-aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~~----------~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
-+..++.. .|+.+... .........|.- +++. +.|. ..+. |.+++....-.|+..+.+
T Consensus 144 ~~~allgG~vd~~~~~~--------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT-~~E~-G~~d~~~~~~~g~~~p~g 213 (274)
T PF03401_consen 144 ALTALLGGHVDAAFGSP--------GEALPYVEAGDLKPLAVFSDERSPALPDVPT-FKEQ-GYPDIVFGSWRGLFAPKG 213 (274)
T ss_dssp HHHHHHTTSSSEEEEEH--------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-B-TTTT-T-TTG--EEEEEEEEETT
T ss_pred HHHHHhCCeeeEEeecH--------HHHHHHHhCCCceEEEEecCccccccCCCCC-HHHh-CccceeeeeeeeeecCCC
Confidence 44444433 56655332 123444445542 1211 1111 1122 232333334468888877
Q ss_pred CCCHH----HHHHHHHHHHhCHHHHHHHHHHHH
Q 011779 417 KEGIT----PLAKNIVKLATHVERRLTMGKRGY 445 (477)
Q Consensus 417 d~~~~----~la~~i~~ll~~~~~~~~~~~~a~ 445 (477)
- ++ .|.+++.+.++||+..+.+.+.+.
T Consensus 214 t--p~~~~~~l~~a~~~~~~~pe~~~~~~~~g~ 244 (274)
T PF03401_consen 214 T--PDEIVDKLADAIKKALEDPEFQEFLEKMGL 244 (274)
T ss_dssp S---HHHHHHHHHHHHHHHT-HHHHHHHHHHTE
T ss_pred C--CHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 5 44 466666677779988877766554
No 217
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=72.89 E-value=11 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.0
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||+++..+..+.|-. ..+..+++.+.+.|+++.++-...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 7899999887665544 667788888888899999997554
No 218
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=72.41 E-value=34 Score=30.06 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc---ccCCHHHHHHhcCEEEEcCCC-------CCCc-ccHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQA-------WGEC-FGRIT 375 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~l~~~~~~aDv~v~pS~~-------~~E~-~g~~~ 375 (477)
.+.++.++.........+.+.+.+..+++|........- ..+++.+.+..||+++++--. |.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 356777776654333356777888888888753333322 236778889999999887532 1222 22247
Q ss_pred HHHHHcCCCEEeeccccccccCCC
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGG 399 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg 399 (477)
.+....|.|++ .+..|.
T Consensus 108 ~~~~~~G~v~~-------G~SAGA 124 (210)
T cd03129 108 LKRVARGVVIG-------GTSAGA 124 (210)
T ss_pred HHHHHcCCeEE-------EcCHHH
Confidence 88888899999 665554
No 219
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.26 E-value=7.5 Score=30.63 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=24.1
Q ss_pred cEEEEEeccCC---CCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|||+|+..... +.+ -....|+.+.+++||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~k--DTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYK--DTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT---HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCC--ChHHHHHHHHHHCCCEEEEEEcC
Confidence 68999986532 222 34667888889999999999854
No 220
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=72.07 E-value=8.2 Score=28.88 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=38.4
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
|.++|.|.....-....+++..+++|++..+.-. ..++...+...+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEehH
Confidence 5678888655545788899999999986333222 24677888889999986554
No 221
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=71.41 E-value=35 Score=28.46 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC--ChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~--~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
.++|+++.. +-.+.+..++..+...|.+++++++..-. ................|..+.......... ...
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l--~~a 74 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEAL--KGA 74 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHH--TT-
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhc--CCC
Confidence 467888873 22388999999999999999999866522 111222222233334455554444433333 358
Q ss_pred cEEEEcCc
Q 011779 152 DLIVLNTA 159 (477)
Q Consensus 152 DiV~~~~~ 159 (477)
|+|+....
T Consensus 75 Dvvy~~~~ 82 (158)
T PF00185_consen 75 DVVYTDRW 82 (158)
T ss_dssp SEEEEESS
T ss_pred CEEEEcCc
Confidence 88887653
No 222
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=71.37 E-value=34 Score=30.84 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=24.9
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
++..++||+|.+..- --+..+--....+.++|++|.+++...+
T Consensus 7 ~~~~~~vL~v~aHPD--De~~g~ggtla~~~~~G~~V~v~~lT~G 49 (237)
T COG2120 7 MLDPLRVLVVFAHPD--DEEIGCGGTLAKLAARGVEVTVVCLTLG 49 (237)
T ss_pred cccCCcEEEEecCCc--chhhccHHHHHHHHHCCCeEEEEEccCC
Confidence 455678888884321 1111122233445889999999994433
No 223
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=71.27 E-value=41 Score=31.96 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=28.3
Q ss_pred eccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 81 SHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 81 ~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
......||.. -.+..|++.|.++|+.|.|++..++.
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 3445556666 56889999999999999999976654
No 224
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=71.20 E-value=44 Score=28.25 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=46.6
Q ss_pred cCceEEEEEecCCCcchHH-HHHHHHHHHhcCCCCcEEEcccc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 306 VPSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~-~~~l~~~~~~~~l~~~v~~~g~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
..+.+++|+|.| .. ...+.+...+.|. +|.+.... +++.+.++.||+++..+. ... +.--|.+.-|.
T Consensus 42 l~gk~vlViG~G-----~~~G~~~a~~L~~~g~--~V~v~~r~~~~l~~~l~~aDiVIsat~--~~~--ii~~~~~~~~~ 110 (168)
T cd01080 42 LAGKKVVVVGRS-----NIVGKPLAALLLNRNA--TVTVCHSKTKNLKEHTKQADIVIVAVG--KPG--LVKGDMVKPGA 110 (168)
T ss_pred CCCCEEEEECCc-----HHHHHHHHHHHhhCCC--EEEEEECCchhHHHHHhhCCEEEEcCC--CCc--eecHHHccCCe
Confidence 356899999998 43 3435555555554 57777765 789999999999998876 322 33344444454
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
-+|
T Consensus 111 viI 113 (168)
T cd01080 111 VVI 113 (168)
T ss_pred EEE
Confidence 444
No 225
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=70.22 E-value=26 Score=27.75 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHHhcCEEEEcCCCCCCccc-----HHHHHHHHcCCCEE
Q 011779 351 APYLAAIDVLVQNSQAWGECFG-----RITIEAMAFQLPVL 386 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g-----~~~lEAma~G~PvI 386 (477)
..++..||++|.-- .|-+- +-.--|.|.|+|.|
T Consensus 67 ~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI 104 (141)
T PF11071_consen 67 RTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLI 104 (141)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeE
Confidence 45689999988643 23221 22455789999999
No 226
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.76 E-value=87 Score=28.39 Aligned_cols=99 Identities=8% Similarity=0.016 Sum_probs=64.0
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch---------HHHHHHHHHHHhcCCCCcEEEccc
Q 011779 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---------KFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~---------~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.|- ..-..-+.+++.++.+++ -++.++.-|.-.++.. +....|.+..++.|++ -+.=.-.
T Consensus 20 aGP-C~vEs~e~~~~~a~~~~~---------~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-~~Tev~d 88 (250)
T PRK13397 20 VGP-CSIESYDHIRLAASSAKK---------LGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-SVSEIMS 88 (250)
T ss_pred ecc-CccCCHHHHHHHHHHHHH---------cCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-EEEeeCC
Confidence 354 445677888888888755 4677777776433221 2456777888888885 2221112
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH-HcCCCEEee
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLLQ 388 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~~ 388 (477)
.+++..+...+|++=.||. +..-..+++++ ..|+||+.+
T Consensus 89 ~~~v~~~~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk 128 (250)
T PRK13397 89 ERQLEEAYDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFK 128 (250)
T ss_pred HHHHHHHHhcCCEEEECcc---cccCHHHHHHHHccCCeEEEe
Confidence 3556666667999999996 44445566666 579999943
No 227
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=68.83 E-value=49 Score=28.99 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCC---cccHHHHHHHH--
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGE---CFGRITIEAMA-- 380 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E---~~g~~~lEAma-- 380 (477)
+.+++++.+.+ .....++...+..+.-..+......++....+. ..|++++-... .+ ..|..+++.+.
T Consensus 3 ~~~Ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDHP----IVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCcH----HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHH
Confidence 36777777762 345566666654431111222222233434433 36888876541 22 25677776664
Q ss_pred -cCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 -FQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 -~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
-++|+|+ .+..... .+.+..|..|++..+.+ ++++.+++..++.
T Consensus 78 ~~~~~iIv------ls~~~~~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 FPSLSIIV------LTMNNNPAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQK 125 (216)
T ss_pred CCCCcEEE------EEecCCHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHC
Confidence 3467772 3333221 23456688899999887 9999999998876
No 228
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=68.51 E-value=20 Score=32.68 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+++.++|..+.++++..+++++++++.+.+..+.+.+..-+..++.+-
T Consensus 202 ~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 202 RELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDYMFHLLQEY 249 (256)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999998889999888887777653
No 229
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=67.54 E-value=23 Score=33.52 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh----hhHHhhhhhhhhhcCcEEEeccch-----hhH
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE----DEVIYSLEHKMWDRGVQVISAKGQ-----ETI 145 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~g~~v~~~~~~-----~~~ 145 (477)
|||+|+.. ..+.....+.|.+.||+|..+....+... ......+.......|++++..... ...
T Consensus 1 mkIvf~Gs-------~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFFGT-------PTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEECC-------CHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 57777753 24667777888888999864443222111 111223455566778888654433 233
Q ss_pred HHhcCCcEEEEcC
Q 011779 146 NTALKADLIVLNT 158 (477)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (477)
.+..+||++++..
T Consensus 74 l~~~~~Dliv~~~ 86 (313)
T TIGR00460 74 VRELKPDVIVVVS 86 (313)
T ss_pred HHhhCCCEEEEcc
Confidence 4567999998864
No 230
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=67.47 E-value=32 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=35.2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
-++++|.|.....=....+++..++.|++-.|.- ....++..+...+|+++.+..
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 3678888843322236778888888888533333 133556666678898887655
No 231
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=67.28 E-value=43 Score=28.93 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=44.1
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc--c---------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G--------- 141 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~--~--------- 141 (477)
|||+++.. |....+..+.+++.+.+. +|.++.+..+.. .........|++++... .
T Consensus 1 ~riail~s-----g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~------~~~~~A~~~gip~~~~~~~~~~~~~~~~~ 69 (190)
T TIGR00639 1 KRIVVLIS-----GNGSNLQAIIDACKEGKIPASVVLVISNKPDA------YGLERAAQAGIPTFVLSLKDFPSREAFDQ 69 (190)
T ss_pred CeEEEEEc-----CCChhHHHHHHHHHcCCCCceEEEEEECCccc------hHHHHHHHcCCCEEEECccccCchhhhhH
Confidence 56777773 334677888888887665 666554443321 12344566788775422 1
Q ss_pred -hhhHHHhcCCcEEEEcC
Q 011779 142 -QETINTALKADLIVLNT 158 (477)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (477)
.....+..++|++++-.
T Consensus 70 ~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 12334567999998864
No 232
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=67.28 E-value=22 Score=32.47 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|+++--|. .+...-.+..|+..|+|||
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLV 88 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEE
Confidence 677777878999997776 6666667888999999999
No 233
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=66.17 E-value=27 Score=32.89 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=45.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh----hhHHhhhhhhhhhcCcEEEeccch-----hhH
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE----DEVIYSLEHKMWDRGVQVISAKGQ-----ETI 145 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~g~~v~~~~~~-----~~~ 145 (477)
|||+|+.. ..+.....+.|.+.||++..+....+... ......+.......|++++..... ...
T Consensus 1 mkIvf~G~-------~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFMGT-------PEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEECC-------CHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 57887753 23566777777777898764443222111 011123455566778888654332 234
Q ss_pred HHhcCCcEEEEcC
Q 011779 146 NTALKADLIVLNT 158 (477)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (477)
.+..+||++++-.
T Consensus 74 l~~~~~Dliv~~~ 86 (309)
T PRK00005 74 LAALNADVIVVVA 86 (309)
T ss_pred HHhcCcCEEEEeh
Confidence 4567999998853
No 234
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=65.92 E-value=31 Score=26.76 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=28.4
Q ss_pred cEEEEEeccCCCCch-hhHHHHHHHHHHhCC---cEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVG---TKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~-~~~~~~l~~~L~~~G---~~V~v~~~~~~ 115 (477)
|+|+++....+.+.. ......++......| ++|.|+....+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~g 45 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDG 45 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchH
Confidence 577777765544443 477888899999999 99999885543
No 235
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=65.80 E-value=1.1e+02 Score=30.42 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=26.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+.|||++.. |....=..|++.|.++|++|+++...
T Consensus 119 ~~mkILVTG------atGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTG------GAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred CCCEEEEEC------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457876654 44466678999999999999988743
No 236
>PRK13054 lipid kinase; Reviewed
Probab=65.32 E-value=26 Score=32.80 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+||+++++.+ +.+|+.+....+...|.+.|+++.+.....+
T Consensus 1 ~~~~~~~~i~N--~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~ 42 (300)
T PRK13054 1 MTFPKSLLILN--GKSAGNEELREAVGLLREEGHTLHVRVTWEK 42 (300)
T ss_pred CCCceEEEEEC--CCccchHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 56778777776 2244556777888899999999887665443
No 237
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.14 E-value=1.4e+02 Score=29.00 Aligned_cols=170 Identities=11% Similarity=0.119 Sum_probs=99.4
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC--CcchHHHHHHHHHHHhcCCCCcEEEccc--
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNK-- 346 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~-- 346 (477)
..+=|.|+....+-...+.+...++++ .++.++|+-... ..+....+++.+..+..+ |++|.|+=.
T Consensus 155 ~~iP~ygsyte~dpv~ia~egv~~fKk---------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDas 224 (483)
T KOG0780|consen 155 ARVPFYGSYTEADPVKIASEGVDRFKK---------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDAS 224 (483)
T ss_pred hCCeeEecccccchHHHHHHHHHHHHh---------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEecc
Confidence 344466777888888888888888866 677778775422 122235667777666666 567777532
Q ss_pred c----CC-HHHHHHhcCE--EEEcCCCC--CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC----Cceeee
Q 011779 347 T----LT-VAPYLAAIDV--LVQNSQAW--GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG----TTGLLH 413 (477)
Q Consensus 347 ~----~~-l~~~~~~aDv--~v~pS~~~--~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~----~~G~l~ 413 (477)
. ++ ...+=...|+ ++++-.+- .-|.-+++. .+.++||+ --..|..-|=++.- -.+-+.
T Consensus 225 iGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIi-------FIGtGEhmdDlE~F~pk~FvsrlL 295 (483)
T KOG0780|consen 225 IGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPII-------FIGTGEHMDDLEPFDPKPFVSRLL 295 (483)
T ss_pred ccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEE-------EEecCccccccCCCChHHHHHHHh
Confidence 1 22 3333344554 45443320 112223344 35789999 55555543323211 124455
Q ss_pred cCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 414 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 414 ~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
--+| ++.|.+.+.++..+ ..+++-++-. .-+|+...+.+++.++.+
T Consensus 296 GmGD--i~glvek~~ev~~~--d~~el~~kl~---~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 296 GMGD--IEGLVEKVQEVGKD--DAKELVEKLK---QGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred cccc--HHHHHHHHHHHhhh--hHHHHHHHHH---hCCccHHHHHHHHHHHHh
Confidence 6678 99999999998732 1223333322 256898888888877654
No 238
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=64.47 E-value=1.5e+02 Score=29.07 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=94.8
Q ss_pred hHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC---C---HHHHHHHHHH
Q 011779 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK---G---QDLFLHSFYE 294 (477)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K---g---~~~ll~a~~~ 294 (477)
..+.+++...++....-|-....+...... .........++++.++.+|++.-...+.. | ....++..+
T Consensus 163 f~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~----~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~- 237 (388)
T COG1887 163 FAEAFNIDKENILETGYPRNDKLFDEAGKT----EDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEK- 237 (388)
T ss_pred HHHHhcccccceeecCcccchhhhhhccch----hhhHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhhhHHH-
Confidence 344667777666555544433333222211 11223455677788899999987766654 2 222222222
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.+.+. ..++.+++-=. |....-.....+ ..+.+..+..-.++..+|..+|++|-= ++.+
T Consensus 238 ~~~~l~-----~~~~~ii~k~H------p~is~~~~~~~~--~~~~~~~vs~~~di~dll~~sDiLITD-------ySSv 297 (388)
T COG1887 238 LKEKLG-----ENEYVIIVKPH------PLISDKIDKRYA--LDDFVLDVSDNADINDLLLVSDILITD-------YSSV 297 (388)
T ss_pred HHHhhc-----cCCeEEEEecC------hhhhhhhhhhhh--ccceeEecccchhHHHHHhhhCEEEee-------chHH
Confidence 222211 14555554433 222221111111 112334444457899999999999932 4578
Q ss_pred HHHHHHcCCCEEeeccccccccCCCc---eEEee---cCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGT---TEIVV---NGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~---~e~v~---~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
..|+|...+|||.. +.+..-. ..... ...-|-++.. .+++.++|.....+++..
T Consensus 298 ~fdf~~l~KPiify-----~~D~~~y~~~rg~~~d~~~~~Pg~~~~~----~~~li~ai~~~~~~~~~~ 357 (388)
T COG1887 298 IFDFMLLDKPIIFY-----TYDLEQYDELRGFYLDYKFEAPGEVVET----QEELIDAIKPYDEDGNYD 357 (388)
T ss_pred HHHHHHhcCcEEEE-----ecChHHHHhhhhhhhhHHhcCCcccccc----HHHHHHHHHhhhcccchh
Confidence 99999999999932 1121111 11111 1123334332 678888888887754433
No 239
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=64.35 E-value=72 Score=31.84 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=74.4
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc---CCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---QLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---G~P 384 (477)
+++++-+.. ..+..+.+..+..|. .|......++....+.. .|+++.=.. -.+.-|+.+++.+.. ++|
T Consensus 6 ~iLvVDDd~----~ir~~l~~~L~~~G~--~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~p 78 (464)
T COG2204 6 RILVVDDDP----DIRELLEQALELAGY--EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLP 78 (464)
T ss_pred CEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCC
Confidence 466666653 456667777777764 45555444444444444 466665444 256667888777666 699
Q ss_pred EEeeccccccccCCCceE---EeecCCceeeecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 385 VLLQKCLYQGTAAGGTTE---IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~~e---~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
||+ .|..|.+.. -++.|..-|+..|-| ++.+...+.+.+.....
T Consensus 79 VI~------~Tg~g~i~~AV~A~k~GA~Dfl~KP~~--~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 79 VIV------MTGHGDIDTAVEALRLGAFDFLEKPFD--LDRLLAIVERALELREL 125 (464)
T ss_pred EEE------EeCCCCHHHHHHHHhcCcceeeeCCCC--HHHHHHHHHHHHHHhhh
Confidence 995 666666543 445677788988888 99999999999875443
No 240
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.08 E-value=37 Score=32.70 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=50.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------hhH
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------ETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----------~~~ 145 (477)
-|+|+. +.-+|-...+..||.+++++|+.+.++|.+.-... ....+.......+++++..... -..
T Consensus 103 VimfVG--LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 103 VIMFVG--LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG--AFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred EEEEEe--ccCCCcceeHHHHHHHHHhcCCceeEEeecccccc--hHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 355554 33345557899999999999999999995543221 1223444445566776543111 123
Q ss_pred HHhcCCcEEEEcCc
Q 011779 146 NTALKADLIVLNTA 159 (477)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (477)
.+..++|+|++.++
T Consensus 179 fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 179 FKKENFDVIIVDTS 192 (483)
T ss_pred HHhcCCcEEEEeCC
Confidence 35679999999874
No 241
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=63.92 E-value=42 Score=31.17 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=48.8
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChh-----hHHhhhhhhhhhcCcEEEeccch-------------hhHHHh
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-----EVIYSLEHKMWDRGVQVISAKGQ-------------ETINTA 148 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----~~~~~~~~~~~~~g~~v~~~~~~-------------~~~~~~ 148 (477)
.|-+..+..|.+.|.++||.|-|+..++..+.- .....+.......|+-+-+.+.. -.+...
T Consensus 62 aGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldA 141 (323)
T COG1703 62 AGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDA 141 (323)
T ss_pred CchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHh
Confidence 355588899999999999999999965544321 11112222223445555444332 245567
Q ss_pred cCCcEEEEcCcchhh
Q 011779 149 LKADLIVLNTAVAGK 163 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (477)
..+|+|++.+...+.
T Consensus 142 aG~DvIIVETVGvGQ 156 (323)
T COG1703 142 AGYDVIIVETVGVGQ 156 (323)
T ss_pred cCCCEEEEEecCCCc
Confidence 899999999876655
No 242
>PRK06849 hypothetical protein; Provisional
Probab=63.71 E-value=38 Score=33.09 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=28.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+||++. |.......+++.|.+.|++|+++....
T Consensus 3 ~~~~VLI~G------~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG------ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC------CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888875 222468899999999999999997653
No 243
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=63.68 E-value=1.1e+02 Score=27.27 Aligned_cols=124 Identities=6% Similarity=0.052 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCccc-HHHHHHHHcCCCE
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLPV 385 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g-~~~lEAma~G~Pv 385 (477)
-+.++.|+... ...+++++++. +++.+.-..-+ ...+..+++++..+. .+... .+.-+|-+.|.+|
T Consensus 47 ~gA~VtVVap~------i~~el~~l~~~----~~i~~~~r~~~-~~dl~g~~LViaATd--D~~vN~~I~~~a~~~~~lv 113 (223)
T PRK05562 47 KGCYVYILSKK------FSKEFLDLKKY----GNLKLIKGNYD-KEFIKDKHLIVIATD--DEKLNNKIRKHCDRLYKLY 113 (223)
T ss_pred CCCEEEEEcCC------CCHHHHHHHhC----CCEEEEeCCCC-hHHhCCCcEEEECCC--CHHHHHHHHHHHHHcCCeE
Confidence 45777888764 23445555442 35655543211 234567887777765 33333 3456666779998
Q ss_pred EeeccccccccCCCceEE-----eecCCceeeecCCCCC---HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 386 LLQKCLYQGTAAGGTTEI-----VVNGTTGLLHPVGKEG---ITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~-----v~~~~~G~l~~~~d~~---~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
. +.+.+...++ +..+..-+.+..+-.+ ...+.+.|++++.+-....+.....|+.+++
T Consensus 114 n-------~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 114 I-------DCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred E-------EcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 5544444443 4444333333322111 2345555666664434444444455555544
No 244
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=63.58 E-value=25 Score=37.26 Aligned_cols=77 Identities=13% Similarity=0.011 Sum_probs=44.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEE-EEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-----hhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~~ 148 (477)
|||+|+. .+.+.....+.|.+.||+|. |+|..+..........+.......|++++..... ....+.
T Consensus 1 mkivf~g-------~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T PRK08125 1 MKAVVFA-------YHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRE 73 (660)
T ss_pred CeEEEEC-------CCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh
Confidence 5677764 23455666677778899988 6663322111111123455667788888654332 233456
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
.+||++++-.
T Consensus 74 ~~~D~iv~~~ 83 (660)
T PRK08125 74 LAPDVIFSFY 83 (660)
T ss_pred cCCCEEEEcc
Confidence 7899887643
No 245
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=63.47 E-value=20 Score=31.85 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=43.2
Q ss_pred ecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh
Q 011779 278 SVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 356 (477)
Q Consensus 278 rl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~ 356 (477)
-++|.|- .+...+.++.+.+ .....+++|+...-......++.+.+++..++ -|.|.|..+ .+-..
T Consensus 5 liDPdK~~~~~~~~~~~~~~~---------~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~---~i~~~ 71 (223)
T TIGR01768 5 LIDPDKTNPSEADEIAKAAAE---------SGTDAILIGGSQGVTYEKTDTLIEALRRYGLP-IILFPSNPT---NVSRD 71 (223)
T ss_pred eECCCCCCccccHHHHHHHHh---------cCCCEEEEcCCCcccHHHHHHHHHHHhccCCC-EEEeCCCcc---ccCcC
Confidence 3466663 2233344555543 34566788865323323455566667777764 566776543 34456
Q ss_pred cCEEEEcCC
Q 011779 357 IDVLVQNSQ 365 (477)
Q Consensus 357 aDv~v~pS~ 365 (477)
+|.+++||.
T Consensus 72 aDa~l~~sv 80 (223)
T TIGR01768 72 ADALFFPSV 80 (223)
T ss_pred CCEEEEEEe
Confidence 999999985
No 246
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=63.38 E-value=14 Score=33.22 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=26.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
||||+........ .-+..|+++|+ .++||+|+++....
T Consensus 1 mrILlTNDDGi~a---~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDDGIHA---PGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCCccCC---HHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 6788776542221 33778888888 88999999976554
No 247
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=63.11 E-value=64 Score=27.35 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=45.7
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.|++++-... .+.-|..+++.+....|+|+ .+..... .+.+..|..|++..|.+ .+++.+++..++.
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~------~s~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (196)
T PRK10360 48 VQVCICDISM-PDISGLELLSQLPKGMATIM------LSVHDSPALVEQALNAGARGFLSKRCS--PDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHccCCCEEE------EECCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHc
Confidence 5888876541 44556778888877888882 2222221 23344577889999888 9999999998875
No 248
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=63.03 E-value=52 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=20.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTK 106 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~ 106 (477)
|||+|+.+. .......+...|.+.+++
T Consensus 1 mrI~~~~Sg-----~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSG-----SGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESS-----SSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcC-----CCHHHHHHHHHHHhCCCC
Confidence 788888743 236788888999999987
No 249
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.57 E-value=31 Score=32.29 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccc-----hhh
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKG-----QET 144 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~-----~~~ 144 (477)
+|||+|+.. +.+...-.++|.+.||+|.-+..+.+....+ ...+........|++++.-.. ...
T Consensus 1 ~mkivF~GT-------p~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~ 73 (307)
T COG0223 1 MMRIVFFGT-------PEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLE 73 (307)
T ss_pred CcEEEEEcC-------chhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHH
Confidence 467877753 3355666677777889987555443333221 122334455667887754322 234
Q ss_pred HHHhcCCcEEEEcC
Q 011779 145 INTALKADLIVLNT 158 (477)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (477)
..+..+||++++-.
T Consensus 74 ~l~~l~~D~ivvva 87 (307)
T COG0223 74 ELAALDPDLIVVVA 87 (307)
T ss_pred HHhccCCCEEEEEe
Confidence 44567899998853
No 250
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=62.56 E-value=51 Score=27.53 Aligned_cols=66 Identities=5% Similarity=-0.095 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-CCHHHHHHhcCEEE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLV 361 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~l~~~~~~aDv~v 361 (477)
=.+.+.++|+..+.. ..-|.-.++-|++ +...+...+++.|. +|...|.. .--..+.++||-|+
T Consensus 89 ~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~FI 153 (160)
T TIGR00288 89 VDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIAI 153 (160)
T ss_pred ccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeEE
Confidence 467889999987744 2346666666665 56666677777774 78888853 45567889999888
Q ss_pred Ec
Q 011779 362 QN 363 (477)
Q Consensus 362 ~p 363 (477)
.-
T Consensus 154 ~L 155 (160)
T TIGR00288 154 IL 155 (160)
T ss_pred eC
Confidence 54
No 251
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.79 E-value=13 Score=28.01 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=44.7
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
++++|.|.... -..+.+++.+++.|++-.|.-.+. .++......+|++++.... .+-..-++..+ .|+||+
T Consensus 7 Ll~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 7 LLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQV---AYMLPDLKKETDKKGIPVE 79 (95)
T ss_pred EEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECchH---HHHHHHHHHHhhhcCCCEE
Confidence 56778875433 366788888888888644433333 5566677889998877651 12233344443 477999
No 252
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=60.99 E-value=1.3e+02 Score=29.43 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=61.0
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
...+.+...+++...-..-+++++.+ ++|++.+++.--.+ .-.+..++ .++-.-.+.+++..
T Consensus 49 ~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~----Tg~e~a~~---~~~~~v~h~YlP~D~ 111 (419)
T COG1519 49 GPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTP----TGAERAAA---LFGDSVIHQYLPLDL 111 (419)
T ss_pred CCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCc----cHHHHHHH---HcCCCeEEEecCcCc
Confidence 34566666777665555555555443 67999988876432 12233333 33322244566642
Q ss_pred -CCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 348 -LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 348 -~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
--+..+++ .-|++|+-- .|-+|+.+.|+-..|+|.+.
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~E---tElWPnli~e~~~~~~p~~L 151 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIME---TELWPNLINELKRRGIPLVL 151 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEe---ccccHHHHHHHHHcCCCEEE
Confidence 33455543 467777654 69999999999999999993
No 253
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=60.19 E-value=1.2e+02 Score=26.45 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCC-cEEEcccc-CC-HHHHHHhcC
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT-LT-VAPYLAAID 358 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~-~~-l~~~~~~aD 358 (477)
.|=...|..|+.-+.+. ..-.++++|... .....+++.++..|-.- +=+++|-. .+ ...-+..=|
T Consensus 43 ~kT~~~L~~A~~~i~~i--------~~~~ILfVgtk~----~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pd 110 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRI--------EPEDILVVSARI----YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPE 110 (196)
T ss_pred HHHHHHHHHHHHHHHHh--------hCCeEEEEecCH----HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCC
Confidence 34455555555554431 134788888873 33445566666554321 11455532 22 112355567
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
++++... ..-...+.||...|+|+|+ ..|.-..++.+ -+.+|.+|+ .-.-...+..++.+
T Consensus 111 lliv~dp---~~~~~Av~EA~~l~IP~Ia------i~DTn~dp~~v-----dypIP~Ndd-s~~Si~li~~lla~ 170 (196)
T TIGR01012 111 VVVVTDP---RADHQALKEASEVGIPIVA------LCDTDNPLRYV-----DLVIPTNNK-GRHSLALIYWLLAR 170 (196)
T ss_pred EEEEECC---ccccHHHHHHHHcCCCEEE------EeeCCCCCccC-----CEEECCCCc-hHHHHHHHHHHHHH
Confidence 7665443 2234789999999999993 33443334433 256666664 33444445555543
No 254
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.40 E-value=24 Score=26.77 Aligned_cols=72 Identities=6% Similarity=0.115 Sum_probs=44.6
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-ccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++++|.|. ...=..+.+++.+++.|++ +.+.- ...++...+..+|++++.... .--+.-.--.+-..|+||.
T Consensus 4 ll~C~~Ga-SSs~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQv-~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 4 LVLCAGGG-TSGLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQM-ASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred EEECCCCC-CHHHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcChH-HHHHHHHHHHhhhcCCCEE
Confidence 46667773 2223678899999999985 44333 237788889999988876541 1111112222445578998
No 255
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=59.11 E-value=30 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=28.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.+-++++.+.+ +.-......+++.|.++|+.|..+-
T Consensus 15 ~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45678888766 2333578899999999999999876
No 256
>PLN02206 UDP-glucuronate decarboxylase
Probab=58.73 E-value=1.7e+02 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=25.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
+.|||++.. |....=..|++.|.++|++|.++..
T Consensus 118 ~~~kILVTG------atGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTG------GAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEEC------cccHHHHHHHHHHHHCcCEEEEEeC
Confidence 447876543 4445667899999999999998763
No 257
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=58.58 E-value=20 Score=30.78 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=29.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|+||++-.+- .++++|+++|.+.|++|.|+-.+
T Consensus 1 ~~~IL~IDNyD------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 1 MMMILLIDNYD------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred CceEEEEECcc------chHHHHHHHHHHcCCceEEEECC
Confidence 46799998776 58999999999999999998755
No 258
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=58.49 E-value=33 Score=33.62 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 420 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.+++.++|..+.+|++..++++++|++.+.+..+.+.+..-+..++.+-
T Consensus 270 ~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 270 LSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEY 318 (395)
T ss_pred hhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7899999999988999999999999999999899988887777666554
No 259
>PRK06756 flavodoxin; Provisional
Probab=58.44 E-value=22 Score=29.11 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|+|+++..+ ..|..+..+..+++.|.+.|++|.++..
T Consensus 2 mkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 577777644 3466778889999999999999987753
No 260
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=58.40 E-value=21 Score=28.53 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||++..... .+. ....++.+.|.+.|++|.++.+..
T Consensus 1 k~i~l~vtGs--~~~-~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGS--IAA-YKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SS--GGG-GGHHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEECH--HHH-HHHHHHHHHHhhCCCEEEEEECCc
Confidence 5666665432 222 348999999999999999888543
No 261
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=57.77 E-value=21 Score=30.48 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|||+++.-+. +.=..++++..++||+|+-++.+..
T Consensus 1 mKIaiIgAsG------~~Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASG------KAGSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCc------hhHHHHHHHHHhCCCeeEEEEeChH
Confidence 6888887543 4446788889999999999996644
No 262
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=57.69 E-value=66 Score=26.80 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=44.8
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCC---cchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN---AQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~---~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.+.|.++|. ....=...++.++.++ +..+.+++...- .+.+..+..++.+.+.| ..+.+.
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~------------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-- 64 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF------------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-- 64 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT------------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE--
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc------------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE--
Confidence 467889994 2222233444444443 356888887531 11123444455555554 456665
Q ss_pred cCCHHHHHHhcCEEEEcCC
Q 011779 347 TLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~ 365 (477)
+++.+.+..+|++...+-
T Consensus 65 -~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp -SSHHHHHTT-SEEEEESS
T ss_pred -eCHHHhcCCCCEEEEcCc
Confidence 788999999999876664
No 263
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=57.21 E-value=1.4e+02 Score=26.46 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=43.9
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV 415 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~ 415 (477)
.+++.+.|...... |++|.-.. .|. -.+++||.-+++|+|. .-|....++++ -+.+|.
T Consensus 161 ~~pd~~~f~~t~~~--------D~vvvln~--~e~-~sAilEA~K~~IPTIg------IVDtN~~P~li-----TYpVPa 218 (251)
T KOG0832|consen 161 SLPDALCFLPTLTP--------DLVVVLNP--EEN-HSAILEAAKMAIPTIG------IVDTNCNPELI-----TYPVPA 218 (251)
T ss_pred CCCcceeecccCCc--------ceeEecCc--ccc-cHHHHHHHHhCCCeEE------EecCCCCccce-----eeccCC
Confidence 35566666664322 88877665 555 3689999999999992 22333344544 255666
Q ss_pred CCCCHHHHHHHHHHHH
Q 011779 416 GKEGITPLAKNIVKLA 431 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll 431 (477)
+| |.-...+-+..++
T Consensus 219 ND-Ds~~sv~f~~~l~ 233 (251)
T KOG0832|consen 219 ND-DSPASVEFILNLL 233 (251)
T ss_pred CC-CcHHHHHHHHHHH
Confidence 65 3444445555444
No 264
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=57.12 E-value=95 Score=24.50 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=11.1
Q ss_pred hHHHhcCCcEEEEcCcch
Q 011779 144 TINTALKADLIVLNTAVA 161 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~ 161 (477)
.+.+..+||+|+++.+..
T Consensus 94 ~~i~~~~p~~V~t~~~~~ 111 (128)
T PF02585_consen 94 DLIREFRPDVVFTPDPDD 111 (128)
T ss_dssp HHHHHH-ESEEEEE-STT
T ss_pred HHHHHcCCCEEEECCCCC
Confidence 445667889998886543
No 265
>PRK00211 sulfur relay protein TusC; Validated
Probab=56.95 E-value=26 Score=27.63 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=31.5
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
||||+|+....|.|... +-..+++-++...+++|.++...++
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFIDDG 43 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEhhh
Confidence 46799999877765533 5567778888888889998886654
No 266
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=56.48 E-value=21 Score=33.36 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=27.9
Q ss_pred CCccEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|.+||+.-+. ..||.. ....+|+..|++.|++|.++-.+
T Consensus 1 ~~~~~~iai~---~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAFY---GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CCcceEEEEE---CCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3445544443 456666 55789999999999999999644
No 267
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=55.58 E-value=74 Score=25.20 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhc-CEEE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 361 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~a-Dv~v 361 (477)
.|....++++++ ..++++|+....+.. .....+..++++.+++ +.+.+..+++....... .+.+
T Consensus 33 ~G~~~v~kaikk------------gkakLVilA~D~s~~-~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVER------------GIAKLVVIAEDVDPE-EIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCChH-HHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCCCCeEE
Confidence 477888887764 568888887753211 2357889999999986 68888778888888765 4444
Q ss_pred EcCCCCCCcccHHHHHH
Q 011779 362 QNSQAWGECFGRITIEA 378 (477)
Q Consensus 362 ~pS~~~~E~~g~~~lEA 378 (477)
+.-. .+||.-.+++-
T Consensus 98 vaI~--d~g~a~~~~~~ 112 (122)
T PRK04175 98 AAIV--DAGKAKELVED 112 (122)
T ss_pred EEEe--chhhhHHHHHH
Confidence 4444 55665554443
No 268
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=55.20 E-value=22 Score=33.34 Aligned_cols=42 Identities=14% Similarity=-0.108 Sum_probs=30.9
Q ss_pred CCccEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||+++|++++...++ -..+ .....+.++|.+.||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 567799999965544 2222 35689999999999999998633
No 269
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=54.97 E-value=24 Score=26.51 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=45.8
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHH--HHHcCCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE--Ama~G~PvI 386 (477)
++++|.|.... -..+.+++.+++.|++-.|...+. .++...+..+|+++.... -.+-..-++ +.-.++||.
T Consensus 3 l~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pq---v~~~~~~i~~~~~~~~~pv~ 75 (96)
T cd05564 3 LLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQ---VRYMLDEVKKKAAEYGIPVA 75 (96)
T ss_pred EEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChh---HHHHHHHHHHHhccCCCcEE
Confidence 57788885443 356788889999988644444433 556677888999887665 112233343 345788998
No 270
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=54.95 E-value=80 Score=24.20 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEc
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~p 363 (477)
|.+.++++++. ..+.|+|+...... ...+.+.++++.++++ .+.+ +..+++...+-...+.++.
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp-~~~~-~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISE--NSKNKFKNYCNKYNIP-YIEG-YSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC-EEEe-cCHHHHHHHhCCCCeEEEE
Confidence 55666666653 46788887765322 3577888888877765 3333 6668888888877666665
Q ss_pred CCCCCCcccHHHHHHH
Q 011779 364 SQAWGECFGRITIEAM 379 (477)
Q Consensus 364 S~~~~E~~g~~~lEAm 379 (477)
-. .++|.-.+++.+
T Consensus 85 i~--d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VK--DKNMAKKLLKLW 98 (104)
T ss_pred Ee--ChHHHHHHHHHH
Confidence 55 677777777654
No 271
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.93 E-value=84 Score=24.30 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=45.5
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
+++.++-+=+. ..+..++..++++.+ ..+++.++++ ..|+++..+. .+.-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 67777633332 244566667777664 2256788887 6899888887 55556678999999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 89 v~ 90 (120)
T PF01408_consen 89 VL 90 (120)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 272
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.89 E-value=28 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=29.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|++.++..-+-.|-.....+|+..|++.|++|.++-.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 556666654433455578999999999999999888644
No 273
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=54.39 E-value=31 Score=25.26 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=35.7
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
++++|.|.....=....+++.+++.|++-.+.... ..+.......+|+++....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 56788875333223488899999998754333333 5667777788999997765
No 274
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=85 Score=27.45 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=30.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
..+|++++..-+.||= -+-.|+.|...|++|+|+...++.
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~~~~ 88 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLGDPK 88 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeCCCC
Confidence 4579999987777663 445688899999999999965444
No 275
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=53.23 E-value=1.1e+02 Score=24.46 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHhcCEEEEcCCCCCCccc-----HHHHHHHHcCCCEE
Q 011779 351 APYLAAIDVLVQNSQAWGECFG-----RITIEAMAFQLPVL 386 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g-----~~~lEAma~G~PvI 386 (477)
..++..||++|.-- .|-+- +-.--|.|.|+|.|
T Consensus 70 ~~li~~aDvvVvrF---GekYKQWNaAfDAg~aaAlgKplI 107 (144)
T TIGR03646 70 RKLIEKADVVIALF---GEKYKQWNAAFDAGYAAALGKPLI 107 (144)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeE
Confidence 45688999988643 23221 22455789999999
No 276
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=53.17 E-value=71 Score=23.33 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=33.4
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
++++|.|.....-....+++...+.++...+..... .++...+..+|+++.+..
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~-~~~~~~~~~~Dliist~~ 57 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI-AEVPSLLDDADLIVSTTK 57 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH-HHhhcccCCCcEEEEcCC
Confidence 567777754333357778888888777544443332 344445678998776554
No 277
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=52.83 E-value=87 Score=23.79 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=21.2
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
.+|+.+++++|+..+.+ -+-..+.+++. +++|
T Consensus 61 ~fP~~kfiLIGDsgq~D---peiY~~ia~~~--P~~i 92 (100)
T PF09949_consen 61 DFPERKFILIGDSGQHD---PEIYAEIARRF--PGRI 92 (100)
T ss_pred HCCCCcEEEEeeCCCcC---HHHHHHHHHHC--CCCE
Confidence 56999999999976544 34445555554 3444
No 278
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=52.64 E-value=1.8e+02 Score=26.52 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=49.2
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-----CcEEEcccc---------------------------CCHHH
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNKT---------------------------LTVAP 352 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-----~~v~~~g~~---------------------------~~l~~ 352 (477)
...|.+++++|.|...- .--+.+.+.+.+.|+. .+|.+.... .++.+
T Consensus 22 ~l~d~riv~~GAGsAg~-gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~e 100 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGI-GIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLE 100 (255)
T ss_dssp -GGG-EEEEEB-SHHHH-HHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHH
T ss_pred CHHHcEEEEeCCChhHH-HHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHH
Confidence 56789999999983111 1233334443444885 677775421 16778
Q ss_pred HHHhc--CEEEEcCCCCCCcccHHHHHHHHc--CCCEE
Q 011779 353 YLAAI--DVLVQNSQAWGECFGRITIEAMAF--QLPVL 386 (477)
Q Consensus 353 ~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~--G~PvI 386 (477)
.+..+ |+++-.|.. .-.|.--++++|+. -.|+|
T Consensus 101 av~~~kPtvLIG~S~~-~g~ft~evv~~Ma~~~erPII 137 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQ-GGAFTEEVVRAMAKHNERPII 137 (255)
T ss_dssp HHHCH--SEEEECSSS-TTSS-HHHHHHCHHHSSSEEE
T ss_pred HHHhcCCCEEEEecCC-CCcCCHHHHHHHhccCCCCEE
Confidence 88888 999988841 56677779999986 46787
No 279
>PRK13556 azoreductase; Provisional
Probab=52.64 E-value=36 Score=29.90 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=28.0
Q ss_pred ccEEEEEeccCCC--Cchh-hHHHHHHHHHHhC--CcEEEEEecC
Q 011779 74 SKLVLLVSHELSL--SGGP-LLLMELAFLLRGV--GTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~--gG~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (477)
|||||++..+... ++.. .....+++.+.+. |++|.++-..
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~ 45 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 45 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4689988876653 4544 4456677777765 8999998854
No 280
>PRK13530 arsenate reductase; Provisional
Probab=52.51 E-value=47 Score=26.72 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=38.6
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHH--H
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--T 147 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--~ 147 (477)
|++++|||||... ..-..+|++|.+. |.++.+.+.+-... .........+...|+.+..... +.+. .
T Consensus 1 ~~~~~vLFvC~~N------~cRS~mAEal~~~~~~~~~~v~SAG~~~~--~~~~~a~~~l~e~Gi~~~~~~s-~~l~~~~ 71 (133)
T PRK13530 1 MNKKTIYFLCTGN------SCRSQMAEGWGKQYLGDKWNVYSAGIEAH--GVNPNAIKAMKEVGIDISNQTS-DIIDNDI 71 (133)
T ss_pred CCCCEEEEEcCCc------hhHHHHHHHHHHHhcCCCEEEECCCCCCC--CCCHHHHHHHHHcCCCcCCCcc-ccCChhH
Confidence 4578999999543 2233444444432 34555555332111 1112233455667776632221 1111 2
Q ss_pred hcCCcEEEEcC
Q 011779 148 ALKADLIVLNT 158 (477)
Q Consensus 148 ~~~~DiV~~~~ 158 (477)
...+|+|++-+
T Consensus 72 ~~~~D~ii~m~ 82 (133)
T PRK13530 72 LNNADLVVTLC 82 (133)
T ss_pred hccCCEEEEec
Confidence 34789998764
No 281
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=52.41 E-value=29 Score=26.34 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=42.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe-cCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
||||++.. |+ +-..++..|.+.-.--.+++ +.++.... ......+..........+.+..++|+
T Consensus 1 MkVLviGs-----Gg--REHAia~~l~~s~~v~~v~~aPGN~G~~~--------~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIGS-----GG--REHAIAWKLSQSPSVEEVYVAPGNPGTAE--------LGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEES-----SH--HHHHHHHHHTTCTTEEEEEEEE--TTGGG--------TSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEECC-----CH--HHHHHHHHHhcCCCCCEEEEeCCCHHHHh--------hceecCCCCCCHHHHHHHHHHcCCCE
Confidence 78998873 32 45677888876532223333 33332111 10000111111223345667889999
Q ss_pred EEEcC--cchhhHHHHHhhhCCCcc
Q 011779 154 IVLNT--AVAGKWLDAVLKEDVPRV 176 (477)
Q Consensus 154 V~~~~--~~~~~~~~~~~~~~~~~~ 176 (477)
|++-. +........+...+++..
T Consensus 66 vvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 66 VVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp EEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred EEECChHHHHHHHHHHHHHCCCcEE
Confidence 99975 444445555566555543
No 282
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=52.36 E-value=35 Score=27.76 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=39.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC----CCCChhhHHhhhhhhhhhcCcEEEeccchhhHHH-
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ----KPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT- 147 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~----~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~- 147 (477)
++|+|||||.... .-+..+..+++.+... ++.|.+.. .+.... ......+.+.|+.+-... .+.+..
T Consensus 1 ~~~kVLFVC~gN~--cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~---~~a~~vl~e~Gid~~~~~-~k~i~~~ 72 (139)
T COG0394 1 MMMKVLFVCTGNI--CRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPD---PRAVEVLAEHGIDISGHR-SKQLTEE 72 (139)
T ss_pred CCceEEEEcCCCc--ccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCC---HHHHHHHHHcCCCcCCcc-CccCchh
Confidence 4689999995431 2224455555555553 34444422 221111 122344556677664321 122222
Q ss_pred -hcCCcEEEEcCc
Q 011779 148 -ALKADLIVLNTA 159 (477)
Q Consensus 148 -~~~~DiV~~~~~ 159 (477)
...+|+|++-..
T Consensus 73 ~~~~~DlIitmd~ 85 (139)
T COG0394 73 DFDEFDLIITMDE 85 (139)
T ss_pred hhhhCCEEEEeCh
Confidence 247999998763
No 283
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=52.29 E-value=1.8e+02 Score=26.36 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=53.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc-------cCCHHHHHHhcCEEEEcCCC------CCCccc-
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA------WGECFG- 372 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-------~~~l~~~~~~aDv~v~pS~~------~~E~~g- 372 (477)
++.+++++...+.....+.+.+.+..+++|.. .|..+.- .+++.+.+..||++++..-. .....+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 45577777654333334566777777888874 3443332 13466789999998876431 012223
Q ss_pred -HHHHHHHHcCCCEEeeccccccccCCCc
Q 011779 373 -RITIEAMAFQLPVLLQKCLYQGTAAGGT 400 (477)
Q Consensus 373 -~~~lEAma~G~PvI~~~~~~~~~~~gg~ 400 (477)
-.+-++...|.|++ .+..|..
T Consensus 106 ~~~l~~~~~~G~vi~-------G~SAGA~ 127 (250)
T TIGR02069 106 LDRLRKRVHEGIILG-------GTSAGAA 127 (250)
T ss_pred HHHHHHHHHcCCeEE-------EccHHHH
Confidence 34668888999998 7777664
No 284
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=52.06 E-value=1.2e+02 Score=29.07 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=45.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... .+.+..++..+...|.+|+++++..-.................|..+......... ....|
T Consensus 153 ~glkv~~vGD~------~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--v~~aD 224 (338)
T PRK02255 153 EDCKVVFVGDA------TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEA--VKDAD 224 (338)
T ss_pred CCCEEEEECCC------chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHH--hCCCC
Confidence 34688888642 36889999999999999999997543222222221222222345444333333222 34688
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|+.-
T Consensus 225 vvy~~ 229 (338)
T PRK02255 225 FVYTD 229 (338)
T ss_pred EEEEc
Confidence 88884
No 285
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.03 E-value=1.2e+02 Score=30.30 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=42.6
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
++.++|+++. ++. .-..+++.|.+.|++|+++....... . ......+...|++++....... ....+
T Consensus 3 ~~~k~v~iiG------~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~---~-~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVG------AGV-SGLALAKFLKKLGAKVILTDEKEEDQ---L-KEALEELGELGIELVLGEYPEE--FLEGV 69 (450)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHHCCCEEEEEeCCchHH---H-HHHHHHHHhcCCEEEeCCcchh--HhhcC
Confidence 3456776653 222 44589999999999999986542111 1 1112233445666654433332 23469
Q ss_pred cEEEEcC
Q 011779 152 DLIVLNT 158 (477)
Q Consensus 152 DiV~~~~ 158 (477)
|+|+...
T Consensus 70 d~vv~~~ 76 (450)
T PRK14106 70 DLVVVSP 76 (450)
T ss_pred CEEEECC
Confidence 9888765
No 286
>PLN00016 RNA-binding protein; Provisional
Probab=51.94 E-value=20 Score=34.88 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=29.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+|+++.... ||....=..+++.|.+.||+|++++...
T Consensus 51 ~~~~VLVt~~~~--GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNS--GGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccC--CCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 457888875544 2333556678899999999999999654
No 287
>PRK10494 hypothetical protein; Provisional
Probab=51.87 E-value=1e+02 Score=28.18 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=52.8
Q ss_pred CcCceEEEEEecCC-CcchHHHHHHHHHHHhcCCCCc-EEEcccc----CC---HHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 305 EVPSVHAVIIGSDM-NAQTKFESELRNYVMQKKIQDR-VHFVNKT----LT---VAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 305 ~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~~l~~~-v~~~g~~----~~---l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
+++..++++.|+.. ....+..+..++.+.++|++.. +..-+.. ++ ..+++....+++.+| .-+.+.+.
T Consensus 118 ~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTs---a~Hm~RA~ 194 (259)
T PRK10494 118 ANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTS---ASHLPRAM 194 (259)
T ss_pred hCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECC---HHHHHHHH
Confidence 45778888888643 2223456666788888999765 4444431 22 444455555888887 45678888
Q ss_pred HHHHHcCCCEE
Q 011779 376 IEAMAFQLPVL 386 (477)
Q Consensus 376 lEAma~G~PvI 386 (477)
..+-..|..|+
T Consensus 195 ~~f~~~Gl~v~ 205 (259)
T PRK10494 195 IFFQQEGLNPL 205 (259)
T ss_pred HHHHHcCCcee
Confidence 88889999999
No 288
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=51.33 E-value=62 Score=28.35 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=40.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHHHHhc
Q 011779 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAI 357 (477)
Q Consensus 279 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~~~~a 357 (477)
++|.|- +.+.+.++++.+ -....+++|+...-......++-+.+++ ..++ -+.|.|..+ .+-..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~---------~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-vilfp~~~~---~i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKD---------AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-VILFPGNVN---GLSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHh---------cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-EEEECCCcc---ccCcCC
Confidence 456665 555555555543 3456678875422222233444455555 4554 566766543 344569
Q ss_pred CEEEEcCC
Q 011779 358 DVLVQNSQ 365 (477)
Q Consensus 358 Dv~v~pS~ 365 (477)
|.+++||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999985
No 289
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.70 E-value=19 Score=33.29 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=56.8
Q ss_pred cEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC------ceEEee--cCCcee
Q 011779 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG------TTEIVV--NGTTGL 411 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg------~~e~v~--~~~~G~ 411 (477)
+..+.=.+....+.+..+|+.+-. -|...=.|...|+||| +...-| +.|--. -|..=.
T Consensus 295 nc~l~lsqqsfadiLH~adaalgm-------AGTAtEQavGLGkPvi-------~fPg~GPQy~pgFA~rQ~rLLG~slt 360 (412)
T COG4370 295 NCSLWLSQQSFADILHAADAALGM-------AGTATEQAVGLGKPVI-------GFPGQGPQYNPGFAERQQRLLGASLT 360 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHHh-------ccchHHHhhccCCcee-------ecCCCCCCcChHHHHHHHHHhcceee
Confidence 444443446778888888875421 2456677899999999 443333 222100 022333
Q ss_pred eecCCCCCHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHH
Q 011779 412 LHPVGKEGITPLAKNIVK-LATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 412 l~~~~d~~~~~la~~i~~-ll~~~~~~~~~~~~a~~~~~~ 450 (477)
++.+. .+-++.+.+ ++.|++..+.+..++++++-+
T Consensus 361 lv~~~----aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 361 LVRPE----AQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred ecCCc----hhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 44443 344445544 999999999999899887744
No 290
>PRK00170 azoreductase; Reviewed
Probab=50.62 E-value=33 Score=29.76 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=28.9
Q ss_pred ccEEEEEeccCCCC-chh-hHHHHHHHHHHhC--CcEEEEEecC
Q 011779 74 SKLVLLVSHELSLS-GGP-LLLMELAFLLRGV--GTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~g-G~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (477)
||||+++..+..+. |.. ..+..+.+.|.+. |++|.++-..
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 46888888766554 544 4556778888887 8999988743
No 291
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=50.40 E-value=1.1e+02 Score=27.93 Aligned_cols=72 Identities=18% Similarity=0.094 Sum_probs=41.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhc-CcEEEec----cchhhHHHhc
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA----KGQETINTAL 149 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~----~~~~~~~~~~ 149 (477)
|+|+++. |.. .-..+++.|.+.||+|.+.+...... ..+... +..+..- .....+....
T Consensus 1 m~ILvlG------GT~-egr~la~~L~~~g~~v~~s~~t~~~~---------~~~~~~g~~~v~~g~l~~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLMG------GTV-DSRAIAKGLIAQGIEILVTVTTSEGK---------HLYPIHQALTVHTGALDPQELREFLKRH 64 (256)
T ss_pred CeEEEEe------chH-HHHHHHHHHHhCCCeEEEEEccCCcc---------ccccccCCceEEECCCCHHHHHHHHHhc
Confidence 4566654 433 37889999999999999888544321 111112 2333321 2234566778
Q ss_pred CCcEEEEcC-cchh
Q 011779 150 KADLIVLNT-AVAG 162 (477)
Q Consensus 150 ~~DiV~~~~-~~~~ 162 (477)
++|+|+--+ |++.
T Consensus 65 ~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 65 SIDILVDATHPFAA 78 (256)
T ss_pred CCCEEEEcCCHHHH
Confidence 899886544 4443
No 292
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=50.38 E-value=1.1e+02 Score=28.71 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=46.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... .+.+..++..+...|.+|+++++..-.................|..+....... .....|
T Consensus 146 ~g~kva~vGD~------~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~---a~~~aD 216 (302)
T PRK14805 146 SKVKLAYVGDG------NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDIE---AIEGHD 216 (302)
T ss_pred CCcEEEEEcCC------CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCHH---HHCCCC
Confidence 34689888641 357889999999999999999976533322222111122233465554333322 245788
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+.-.
T Consensus 217 vvy~~~ 222 (302)
T PRK14805 217 AIYTDT 222 (302)
T ss_pred EEEeec
Confidence 888853
No 293
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.22 E-value=1.3e+02 Score=28.32 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~ 347 (477)
+..+|+ +-.=.+.|.++.+++.++ .+|+ .+.+.|.|... ...-....++++.|+. ..|-|-|.-
T Consensus 122 ~p~~l~-v~~~s~~~t~~dlv~~~k-----------~~p~-~v~~~~~g~Gs--~dhl~~~~~~k~~Gi~~~~Vpy~g~g 186 (319)
T COG3181 122 DPGVLV-VRADSPYKTLKDLVAYAK-----------ADPG-SVIGGGSGLGS--ADHLAGALFAKAAGIKITYVPYKGGG 186 (319)
T ss_pred ccceEE-EeCCCCcccHHHHHHHHH-----------hCCC-eEEecCCCCCc--HHHHHHHHHHHHhCCceeEEeecCcc
Confidence 333443 334467899999888877 3477 34444443211 2233345556666662 123333333
Q ss_pred CCHHHHH-HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccc-cccCC-----CceEEeecCCceeeecCCC--C
Q 011779 348 LTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQ-GTAAG-----GTTEIVVNGTTGLLHPVGK--E 418 (477)
Q Consensus 348 ~~l~~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~-~~~~g-----g~~e~v~~~~~G~l~~~~d--~ 418 (477)
+-+..++ ...|+.+... .|..+ -+++--..+-.|.++-... ..|++ |..-+ ...-.|+..+++- +
T Consensus 187 ea~taLlgg~v~a~~~~~---se~~~--~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~-~~~wrgvfap~g~~~e 260 (319)
T COG3181 187 EALTALLGGHVDAGSTNL---SELLS--QVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVV-MSIWRGVFAPAGTPDE 260 (319)
T ss_pred HHHHHHhcCceeeeecCh---hhhhh--hhccCceEEEEeechhhcCCCCCCCChHhcCCcee-eeeeeEEEeCCCCCHH
Confidence 4455555 4455544221 23222 1122111122221100000 11222 22222 2334677777764 1
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
..+.+.+++++++++++.++.+.+....-. .-+-+.+...+++-+
T Consensus 261 ~~~~~~~a~kk~l~s~e~~~~~~~~~~~~~--~~~~eel~a~i~~~~ 305 (319)
T COG3181 261 IIAKLSAALKKALASPEWQKRLKELGLVPS--YLTGEELKAYIEKEI 305 (319)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhcCCCCc--cCCHHHHHHHHHHHH
Confidence 245678888999999999888877665422 124455555554433
No 294
>PRK09271 flavodoxin; Provisional
Probab=50.16 E-value=36 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|||+++..+ ..|..+..+..+++.|.+.|++|.+..
T Consensus 1 mkv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 567776654 336777889999999999999988764
No 295
>PRK05920 aromatic acid decarboxylase; Validated
Probab=50.15 E-value=34 Score=29.97 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|||++-.... .+.....++++.|.+.|++|.++....
T Consensus 2 ~~krIllgITGs---iaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 2 KMKRIVLAITGA---SGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCCEEEEEEeCH---HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 346666554321 222568899999999999999998554
No 296
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=50.00 E-value=1.4e+02 Score=25.73 Aligned_cols=55 Identities=25% Similarity=0.215 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHh-----cCCcEEEEc
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA-----LKADLIVLN 157 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-----~~~DiV~~~ 157 (477)
+.-..+|+++..+|++|++++...... ...++.++.......+... .+.|+++..
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~~~~------------~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPSSLP------------PPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccc------------ccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 778899999999999999999653210 0236677776665443322 345777664
No 297
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=49.62 E-value=31 Score=29.70 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=41.9
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-- 347 (477)
..+.+...+++...-...|+ +++++ ++|+.++++....+. -.+..++.... ...+.++...
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li---~~l~~-------~~p~~~illT~~T~t----g~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLI---KRLRK-------QRPDLRILLTTTTPT----GREMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHH---HHHTT----------TS-EEEEES-CC----HHHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHH---HHHHH-------hCCCCeEEEEecCCc----hHHHHHHhCCC---CeEEEEeCccCH
Confidence 55666666655433333333 33322 568999998876431 23333333222 1234554431
Q ss_pred CCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
..+..+++.- |++|+-- .|-+|+-+.+|-..|+|++
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~ 122 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVV 122 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEE
Confidence 3355666654 8887765 6999999999999999999
No 298
>PRK11914 diacylglycerol kinase; Reviewed
Probab=49.50 E-value=49 Score=31.05 Aligned_cols=46 Identities=20% Similarity=0.053 Sum_probs=33.1
Q ss_pred ccCCCccEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 69 LSFMKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+..|.+|+++++....+- |.+.+...++.+.|.+.|+++.++....
T Consensus 3 ~~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 3 LRRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred cCcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 456777888887765543 3334667788999999999988776544
No 299
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=49.18 E-value=1e+02 Score=23.91 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEec
Q 011779 91 LLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
.-+..++..|.+.||+|.++-.
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEECC
Confidence 3477889999999999998853
No 300
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=49.10 E-value=2.2e+02 Score=26.34 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=27.2
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
++.+.+. ..|+++-.|.. .--|.--++++|+ +..|+|
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEE
Confidence 4666666 77999988851 4457777899998 467888
No 301
>PRK06703 flavodoxin; Provisional
Probab=48.99 E-value=36 Score=27.99 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|+|+++-.+ ..|..+..+..+++.|.+.|++|.+.-
T Consensus 2 mkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~ 37 (151)
T PRK06703 2 AKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQE 37 (151)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEe
Confidence 466666543 336667889999999999999998875
No 302
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.99 E-value=2.2e+02 Score=26.21 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred EEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc---------chHHHHHHHHHHHhcCCCCcEE
Q 011779 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 272 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~v~ 342 (477)
.++++|- ..-...+.+++.++++++ -.++++..|.-.++ .......+++..++.|++--..
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te 97 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE 97 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe
Confidence 4445565 445678999999998876 34566777721111 1234566788888888862222
Q ss_pred EccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 343 ~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+.. ..++..+...+|++-.+|.. -+.++ -+-++-..|+||+.
T Consensus 98 ~~d-~~~~~~l~~~vd~~kIga~~-~~n~~-LL~~~a~~gkPV~l 139 (266)
T PRK13398 98 VMD-TRDVEEVADYADMLQIGSRN-MQNFE-LLKEVGKTKKPILL 139 (266)
T ss_pred eCC-hhhHHHHHHhCCEEEECccc-ccCHH-HHHHHhcCCCcEEE
Confidence 222 24455555568999999972 44433 23444567999994
No 303
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=48.97 E-value=23 Score=32.52 Aligned_cols=40 Identities=18% Similarity=-0.035 Sum_probs=32.8
Q ss_pred cEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+|++++...-| ||.+..+.+|++.|.+.-+.|..++...
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 689999976444 9999999999999999878888777553
No 304
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=48.94 E-value=1.1e+02 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=28.7
Q ss_pred EeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 80 VSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 80 v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
+......||.. -.+..|++.|.++|+.|.|++..++.
T Consensus 60 sVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 60 VVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred EECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 34456666666 55889999999999999999966654
No 305
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=48.71 E-value=1.8e+02 Score=26.39 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE--EEccc--cCCHHHHHHh
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV--HFVNK--TLTVAPYLAA 356 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v--~~~g~--~~~l~~~~~~ 356 (477)
-.|=...|..|++-+.. +.+ + -.++++|..+ .....+++.+...|-. .| +|+|- .+.+...+..
T Consensus 51 L~kT~~~L~~Aa~~i~~-i~~-----~-~~Il~Vstr~----~~~~~V~k~A~~tg~~-~i~~Rw~pGtlTN~~~~~f~~ 118 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAA-IEN-----P-ADVVVVSSRP----YGQRAVLKFAQYTGAS-AIAGRFTPGTFTNQIQKKFME 118 (249)
T ss_pred HHHHHHHHHHHHHHHHH-HhC-----C-CcEEEEEcCH----HHHHHHHHHHHHhCCe-EECCcccCCCCCCccccccCC
Confidence 34555666666665543 221 2 3567788762 2344455566655431 11 34443 2333344556
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
=|++|+..- -.=...+.||-..|+|||+ ..|+-..++.| -+.+|.+|++.. -...+..++.
T Consensus 119 P~llIV~Dp---~~d~qAI~EA~~lnIPvIa------l~DTds~p~~V-----Dy~IP~Ndds~~-SI~li~~lLa 179 (249)
T PTZ00254 119 PRLLIVTDP---RTDHQAIREASYVNIPVIA------LCDTDSPLEYV-----DIAIPCNNRGKE-SIALMYWLLA 179 (249)
T ss_pred CCEEEEeCC---CcchHHHHHHHHhCCCEEE------EecCCCCcccC-----ceeeCCCCchHH-HHHHHHHHHH
Confidence 666665442 2224789999999999993 33443444443 256666654333 3333444443
No 306
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=48.47 E-value=1.8e+02 Score=25.26 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=58.3
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH-HHHHHHHHHhcCCCCcEEEccccCCHH
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKTLTVA 351 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~-~~~l~~~~~~~~l~~~v~~~g~~~~l~ 351 (477)
|+-.|+++-..=++++++--+ ..+++.+-++|+|...++.. +....+..++.+
T Consensus 7 ~ik~GniGts~v~dlllDErA-----------dRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~--------------- 60 (277)
T COG1927 7 FIKCGNIGTSPVVDLLLDERA-----------DREDIEVRVVGSGAKMDPECVEAAVTEMLEEFN--------------- 60 (277)
T ss_pred EEEecccchHHHHHHHHHhhc-----------ccCCceEEEeccccccChHHHHHHHHHHHHhcC---------------
Confidence 444566654444444444222 34889999999985443321 222333333332
Q ss_pred HHHHhcCEEEEcCCCCCCcccHHHHHHHH-cCCCEEeeccccccccCCCc--eEEeecCCceeeecCCC
Q 011779 352 PYLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVLLQKCLYQGTAAGGT--TEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma-~G~PvI~~~~~~~~~~~gg~--~e~v~~~~~G~l~~~~d 417 (477)
.|++++-|-.-.-+-|-..-|.++ +|.|+|+ .++.+|. .+-++....|++.-..|
T Consensus 61 -----pDfvi~isPNpaaPGP~kARE~l~~s~~Paii------igDaPg~~vkdeleeqGlGYIivk~D 118 (277)
T COG1927 61 -----PDFVIYISPNPAAPGPKKAREILSDSDVPAII------IGDAPGLKVKDELEEQGLGYIIVKAD 118 (277)
T ss_pred -----CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEE------ecCCccchhHHHHHhcCCeEEEecCC
Confidence 233333222103445667777777 6888774 5666664 45555556777776544
No 307
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=48.44 E-value=1.2e+02 Score=28.62 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=45.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... .+.+..++..|...|.+|.++++..-.................|.++......... ....|
T Consensus 147 ~g~~v~~vGd~------~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a--~~~aD 218 (304)
T TIGR00658 147 KGVKVVYVGDG------NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEA--VKGAD 218 (304)
T ss_pred CCcEEEEEeCC------CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 45688888642 36889999999999999999996543332222222222223345555433333322 24688
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|+.-
T Consensus 219 vvy~~ 223 (304)
T TIGR00658 219 VIYTD 223 (304)
T ss_pred EEEEc
Confidence 88874
No 308
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.44 E-value=1.3e+02 Score=28.74 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=46.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... ..+.+..++..+...|.+|.++++..-.................|..+......... ....|
T Consensus 154 ~g~kia~vGD~-----~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~aD 226 (332)
T PRK04284 154 KDIKFTYVGDG-----RNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEG--VKGSD 226 (332)
T ss_pred CCcEEEEecCC-----CcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 35789888642 126788999999999999999997643332222211112223345555433333322 24788
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|++.
T Consensus 227 vvy~~ 231 (332)
T PRK04284 227 VIYTD 231 (332)
T ss_pred EEEEC
Confidence 88885
No 309
>COG1647 Esterase/lipase [General function prediction only]
Probab=48.41 E-value=1.9e+02 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=26.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
+-+++.|.+ .|.++-+..|+++|.++|+.|+.=.
T Consensus 16 ~AVLllHGF--TGt~~Dvr~Lgr~L~e~GyTv~aP~ 49 (243)
T COG1647 16 RAVLLLHGF--TGTPRDVRMLGRYLNENGYTVYAPR 49 (243)
T ss_pred EEEEEEecc--CCCcHHHHHHHHHHHHCCceEecCC
Confidence 444444444 4778899999999999999988765
No 310
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=48.23 E-value=1.8e+02 Score=28.55 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=48.1
Q ss_pred ccEEEEEeccC-CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 74 SKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 74 ~~~Il~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
.++|+++.... ..|...++...++..+...|.+|.++++..-.................|..+......... ....|
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~ea--v~~aD 264 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEA--FKDAD 264 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 35788876432 2244457889999999999999999997643222211111112233445555433333322 34789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 265 vVYtd~ 270 (395)
T PRK07200 265 IVYPKS 270 (395)
T ss_pred EEEEcC
Confidence 998864
No 311
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=48.07 E-value=99 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=28.4
Q ss_pred CHHHHHHhcCEEEEcCCCCCCccc-HHHHHHHHcCCCEEeeccccccccCCCceEEe
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV 404 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g-~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v 404 (477)
++...+..+|+++..+. .+... ...-+|-+.|+||- ..+.+...+++
T Consensus 53 ~~~~~l~~~~lV~~at~--d~~~n~~i~~~a~~~~i~vn-------~~D~p~~~dF~ 100 (103)
T PF13241_consen 53 EFEEDLDGADLVFAATD--DPELNEAIYADARARGILVN-------VVDDPELCDFI 100 (103)
T ss_dssp S-GGGCTTESEEEE-SS---HHHHHHHHHHHHHTTSEEE-------ETT-CCCCSEE
T ss_pred hHHHHHhhheEEEecCC--CHHHHHHHHHHHhhCCEEEE-------ECCCcCCCeEE
Confidence 34456778898887765 33333 34455666899999 77776666554
No 312
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=47.72 E-value=1.9e+02 Score=26.69 Aligned_cols=48 Identities=8% Similarity=0.268 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc-----CCHHHHHHhcCEEEEcC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT-----LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~-----~~l~~~~~~aDv~v~pS 364 (477)
+.-..+++|++. ..+-..-|+ .++|.=.|+. +.+..|+...|+++.--
T Consensus 210 ~~~~vI~vGDs~----------~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D 264 (277)
T TIGR01544 210 DRSNIILLGDSQ----------GDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQD 264 (277)
T ss_pred CcceEEEECcCh----------hhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECC
Confidence 445789999983 112223344 3467777763 44888999999998653
No 313
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=47.68 E-value=1.7e+02 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCHHHHHHhcCEEE--EcCCCCCCcccHH---HHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLV--QNSQAWGECFGRI---TIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v--~pS~~~~E~~g~~---~lEAma~G~PvI 386 (477)
.++.++++.||+++ .|.. .|+-|+. .+..|--|.-.|
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT--~eT~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 189 DSLDELLAEADILTLHLPLT--PETRGLINAEELAKMKPGAILI 230 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCC--cchhcccCHHHHhhCCCCeEEE
Confidence 56999999999976 4555 7887765 555565565444
No 314
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=47.66 E-value=1.5e+02 Score=24.11 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=51.2
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhc--CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK--KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~--~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
..+++-+.|+. +..+.+..+..+. +.+-.|..+...++ ...||++.+... +.-...-+-....+.|
T Consensus 26 ~~~~icv~g~~-----~~~~~L~~l~~~~~~~~~i~v~~~~~~~~----~~~C~ilyi~~~---~~~~~~~i~~~~~~~~ 93 (145)
T PF13689_consen 26 SPFRICVLGDD-----PFAEALSTLAGKQVGGRPIRVRRLSSPNE----ISGCHILYISSS---ESSQLPEILRKLPGKP 93 (145)
T ss_pred CCeEEEEECCh-----HHHHHHHHhhhcccCCCcEEEEECCCCcc----cccccEEEECCC---ChHHHHHHHHhcCCCc
Confidence 45788888887 6777777763222 22222333332233 478999888775 3333322334455777
Q ss_pred EEeeccccccccCCCceEEee-cCCceeeec
Q 011779 385 VLLQKCLYQGTAAGGTTEIVV-NGTTGLLHP 414 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~~e~v~-~~~~G~l~~ 414 (477)
|++..........||...++. ++...+.++
T Consensus 94 vLtIsd~~~f~~~G~~I~l~~~~~rl~f~IN 124 (145)
T PF13689_consen 94 VLTISDGEGFAEQGGMINLVREGNRLRFEIN 124 (145)
T ss_pred eEEEECCCCccccCcEEEEEEECCEEEEEEC
Confidence 775322221345566666665 334444444
No 315
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=47.61 E-value=38 Score=31.70 Aligned_cols=40 Identities=13% Similarity=-0.085 Sum_probs=29.9
Q ss_pred CCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|.++||++++...++ .-.-+.....+++|.+.||+|..+.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 567899999965544 1112567789999999999998875
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.45 E-value=2.3e+02 Score=26.10 Aligned_cols=83 Identities=25% Similarity=0.217 Sum_probs=45.1
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----h----hH-
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----E----TI- 145 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----~----~~- 145 (477)
+++..++. .+-.|=...+..||..+.+.|+.|.+++.+.... .....+.......++.++..... . .+
T Consensus 72 ~~vi~l~G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~--~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 72 PNVILFVG-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA--AAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH--HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 34544442 2113334678899999999999999998553211 11122333344556666543211 1 11
Q ss_pred -HHhcCCcEEEEcCcc
Q 011779 146 -NTALKADLIVLNTAV 160 (477)
Q Consensus 146 -~~~~~~DiV~~~~~~ 160 (477)
....++|+|++-++.
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 123567877777653
No 317
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=47.43 E-value=48 Score=29.39 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=29.5
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+||+++...... +|.+ .=+..-...|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 578888864433 4655 346667788999999999999754
No 318
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.27 E-value=68 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=20.2
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEE
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWI 110 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~ 110 (477)
||.+.....+-+.+.+.|.+..+.
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 566778888888899999998888
No 319
>PRK05568 flavodoxin; Provisional
Probab=47.19 E-value=46 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
++++++..+ ..|..++.+..+++.+.+.|++|.++...
T Consensus 2 ~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 2 KKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 355555543 34666788889999999999999988643
No 320
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.17 E-value=43 Score=29.08 Aligned_cols=38 Identities=18% Similarity=-0.032 Sum_probs=26.6
Q ss_pred CccEEEEEeccCCCCchh-hH-HHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGP-LL-LMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~-~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+.|+|++-.. ||.. .. ..++++.|.+.|++|.++....
T Consensus 4 ~~k~IllgVT----Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLT----GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEc----CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4567765542 2323 44 5899999999999999888554
No 321
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.94 E-value=1.2e+02 Score=27.74 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=54.4
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
...++.||++|..... .|++=-.+++.. -+.+++ ....++..+ -....--+..+|.+ ...++++|.+.
T Consensus 47 ~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~-------~~~~~~~~~-~~~~dPH~Wldp~n--~~~~a~~I~~~ 114 (264)
T cd01020 47 AAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVI-------AADLDGHDD-KEGDNPHLWYDPET--MSKVANALADA 114 (264)
T ss_pred HHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEE-------eeecccccC-CCCCCCceecCHhH--HHHHHHHHHHH
Confidence 4457889999987653 566555566655 455666 443332210 00012235556655 77888888888
Q ss_pred Hh--CHHHHHHHHHHHHHHHHH
Q 011779 431 AT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 431 l~--~~~~~~~~~~~a~~~~~~ 450 (477)
+. ||+..+...+|+.++..+
T Consensus 115 L~~~dP~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 115 LVKADPDNKKYYQANAKKFVAS 136 (264)
T ss_pred HHHhCcccHHHHHHHHHHHHHH
Confidence 87 888888888888776644
No 322
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=46.54 E-value=1.2e+02 Score=26.56 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
...++|+++. || ......++.|.+.|++|+|+.+.... .+........+............. ..
T Consensus 8 l~~k~vLVIG-----gG--~va~~ka~~Ll~~ga~V~VIs~~~~~-------~l~~l~~~~~i~~~~~~~~~~~l~--~a 71 (202)
T PRK06718 8 LSNKRVVIVG-----GG--KVAGRRAITLLKYGAHIVVISPELTE-------NLVKLVEEGKIRWKQKEFEPSDIV--DA 71 (202)
T ss_pred cCCCEEEEEC-----CC--HHHHHHHHHHHHCCCeEEEEcCCCCH-------HHHHHHhCCCEEEEecCCChhhcC--Cc
Q ss_pred cEEEEcC
Q 011779 152 DLIVLNT 158 (477)
Q Consensus 152 DiV~~~~ 158 (477)
|+|++-+
T Consensus 72 dlViaaT 78 (202)
T PRK06718 72 FLVIAAT 78 (202)
T ss_pred eEEEEcC
No 323
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=46.00 E-value=46 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=31.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (477)
-.+++.|+|+-+.. ...+.+++++.+.+-.+.+.|+...++
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~e 108 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEE 108 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHH
Confidence 57899999986532 137889999999988888988876544
No 324
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=45.97 E-value=3e+02 Score=26.99 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHHHHHhcCE
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDV 359 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~~~~~aDv 359 (477)
..|.+..++++.+....-... ...++-.+.|+|.-.. .....+++++.++.|+.-+..+.+. .+++.. +..|.+
T Consensus 135 ~~G~~~a~~al~~~l~~~~~~-~~~~~~~VNiig~~~~--~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~ 210 (406)
T cd01967 135 SLGHHIANDAILDHLVGTKEP-EEKTPYDVNIIGEYNI--GGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKL 210 (406)
T ss_pred cHHHHHHHHHHHHHhcCCCCc-CCCCCCeEEEEecccc--chhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCE
Confidence 557887877776543210000 0112346778886421 1356889999999999877777754 255554 555555
Q ss_pred EEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 360 LVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
-|..+. . ++..+.+.|. +|+|.+
T Consensus 211 niv~~~--~--~~~~~a~~L~~r~GiP~~ 235 (406)
T cd01967 211 NLVHCS--R--SMNYLAREMEERYGIPYM 235 (406)
T ss_pred EEEECh--H--HHHHHHHHHHHhhCCCEE
Confidence 454332 1 3444555443 789998
No 325
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=45.92 E-value=39 Score=26.98 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=27.7
Q ss_pred EEEEeccCCCCchh-hHHHHHHHHHHhCCcEE-EEEecCCC
Q 011779 77 VLLVSHELSLSGGP-LLLMELAFLLRGVGTKV-NWITIQKP 115 (477)
Q Consensus 77 Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V-~v~~~~~~ 115 (477)
++++....+.|+.. +...++++.+.+.||+| .|+...++
T Consensus 2 ~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 42 (127)
T TIGR03012 2 YTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFYQDG 42 (127)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEehHH
Confidence 55666555555533 78999999999999995 77764443
No 326
>PRK12862 malic enzyme; Reviewed
Probab=45.61 E-value=2.1e+02 Score=30.84 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=53.1
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccc------------------------cCCHHHHHHhcCE
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 359 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~------------------------~~~l~~~~~~aDv 359 (477)
...+.++++.|.| .-.-.+-++....|+. .+|.+... ..++.+.+..+|+
T Consensus 190 ~~~~~~iv~~GaG-----aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v 264 (763)
T PRK12862 190 DIEDVKLVASGAG-----AAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADV 264 (763)
T ss_pred ChhhcEEEEEChh-----HHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCE
Confidence 5578899999988 4444555555556774 36655441 0347788888999
Q ss_pred EEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 360 LVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
|+-.|. .-.|.--+++.|+ ..|+|
T Consensus 265 ~iG~s~--~g~~~~~~v~~M~-~~pii 288 (763)
T PRK12862 265 FLGLSA--AGVLKPEMVKKMA-PRPLI 288 (763)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEE
Confidence 999887 6667778999998 88988
No 327
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=45.21 E-value=3.6e+02 Score=27.64 Aligned_cols=119 Identities=9% Similarity=-0.009 Sum_probs=60.7
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEE-----EEeecccCCCHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA-----IINSVSRGKGQDLFL 289 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il-----~vGrl~~~Kg~~~ll 289 (477)
+.+.+.+...+....+++..|...+-.+..-.+-.. .-.+++++.+++.+..++. |.| ....|++..+
T Consensus 128 ~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a-----~i~~~~~~~~~p~~~pVi~v~TpgF~G--s~~~Gyd~a~ 200 (515)
T TIGR01286 128 KNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNA-----FIGNAKKEGFIPDDFPVPFAHTPSFVG--SHITGYDNMF 200 (515)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHH-----HHHHHHHhcCCCCCCceEEeeCCCCcc--cHHHHHHHHH
Confidence 344444444444444566666666555443332211 1233555555554433432 134 3357888888
Q ss_pred HHHHHHHHHHHh-hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 290 HSFYESLELIKE-KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 290 ~a~~~l~~~~~~-~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
+++-+.....+. ...+.++-++-|+|+-. .......+++++.+.+|+.-++
T Consensus 201 ~ail~~l~~~~~~~~~~~~~~~VNii~g~~-~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 201 KGILEYFTKGSMDDKVVGSNGKINIIPGFE-TYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEECCCC-CCchhHHHHHHHHHHcCCCeEE
Confidence 877654321110 00011334566776321 1124678899999999996554
No 328
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=45.20 E-value=1.4e+02 Score=26.35 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=42.5
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHH-----cCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMA-----FQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma-----~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
..|+.++=-+- +.+-|+.++...- +.+-+|++ |++.--+.+.++-|...+++.|-. .+.+-+++.+.
T Consensus 46 ~pDLILLDiYm-Pd~~Gi~lL~~ir~~~~~~DVI~iTA-----A~d~~tI~~alr~Gv~DYLiKPf~--~eRl~~aL~~y 117 (224)
T COG4565 46 KPDLILLDIYM-PDGNGIELLPELRSQHYPVDVIVITA-----ASDMETIKEALRYGVVDYLIKPFT--FERLQQALTRY 117 (224)
T ss_pred CCCEEEEeecc-CCCccHHHHHHHHhcCCCCCEEEEec-----cchHHHHHHHHhcCchhheeccee--HHHHHHHHHHH
Confidence 34665544332 6777877776666 33344421 334444566666677778888776 78888888877
Q ss_pred Hh
Q 011779 431 AT 432 (477)
Q Consensus 431 l~ 432 (477)
..
T Consensus 118 ~~ 119 (224)
T COG4565 118 RQ 119 (224)
T ss_pred HH
Confidence 54
No 329
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=45.19 E-value=1e+02 Score=27.32 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=52.9
Q ss_pred CCHHHHHHhcCEEEEcCCC-------CCCcccHHHHHHHHcCCCEEeec-cccccccCCCc-eEEeecCCceeeecCCCC
Q 011779 348 LTVAPYLAAIDVLVQNSQA-------WGECFGRITIEAMAFQLPVLLQK-CLYQGTAAGGT-TEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~-------~~E~~g~~~lEAma~G~PvI~~~-~~~~~~~~gg~-~e~v~~~~~G~l~~~~d~ 418 (477)
+++...|..+|++++=-.. |.|.+-..+=.....|+++|.+. .+ -....+. +++...-..|+.+.-...
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~--P~~l~~~~~~L~SRl~~Gl~~~l~~p 166 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP--PSELSGLLPDLRSRLSWGLVVELQPP 166 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS---TTTTTTS-HHHHHHHHCSEEEEE---
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC--CccccccChhhhhhHhhcchhhcCCC
Confidence 3455668899999854321 01111122334557899988431 11 1112222 223222234555544433
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
|.++..+.+.+...... -.+.+...+++.+++.. -...++.++.++
T Consensus 167 d~~~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~~--~~r~L~~~l~~l 212 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERG--IELPEEVIEYLARRFRR--DVRELEGALNRL 212 (219)
T ss_dssp -HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHhhcC--CHHHHHHHHHHH
Confidence 36777777777665221 23556666666665432 233444444443
No 330
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=45.03 E-value=2e+02 Score=27.73 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=47.4
Q ss_pred ccEEEEEeccC-CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 74 SKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 74 ~~~Il~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..+|+++.... ..|-..++...++..++..|.+|+++++..-.................|..+......... ....|
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea--~~~aD 247 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEA--FKDAD 247 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 45788775332 2232346778899999999999999997643322222211122233456555433333322 24789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 248 vvyt~~ 253 (357)
T TIGR03316 248 IVYPKS 253 (357)
T ss_pred EEEECC
Confidence 998864
No 331
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.00 E-value=45 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=25.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||++..... .+.....++.+.|.+.|++|.++....
T Consensus 2 k~Ill~vtGs---iaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGS---IAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeCh---HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 5565554321 122557899999999999999888553
No 332
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=44.77 E-value=3.3e+02 Score=27.05 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=82.1
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc---cCCCHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQDLFLHS 291 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~---~~Kg~~~ll~a 291 (477)
+.+.+.+.+....-.+++.+|...+-.+..-.+-... -.+++++.+++ ++.+....+. ...|.+..+++
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v-----~~~~~~~~~~p---vi~v~t~gf~g~~~~~G~~~a~~a 146 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESV-----VEELEDEIGIP---VVALHCEGFKGKHWRSGFDAAFHG 146 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHH-----HHHHHHhhCCC---EEEEeCCccCCccHhHHHHHHHHH
Confidence 3344444434333335667776666555443332211 23344444432 3333332222 24678887777
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCc---chHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH--HhcCEEEEcCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQA 366 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~ 366 (477)
+.+....-++. ...+-.+-|+|..... ...+..+++++.+++|+.-+..+.|. ..+.++. ..|.+-+..+.
T Consensus 147 l~~~~~~~~~~--~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~-~~~~ei~~~~~A~lniv~~~- 222 (426)
T cd01972 147 ILRHLVPPQDP--TKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGG-CSVEELERASEAAANVTLCL- 222 (426)
T ss_pred HHHHhcCCCCC--CCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHhcccCCEEEEECh-
Confidence 76543210000 0112256778865321 12356889999999999877777763 3444443 33444443332
Q ss_pred CCCcccHHHHHHH--HcCCCEE
Q 011779 367 WGECFGRITIEAM--AFQLPVL 386 (477)
Q Consensus 367 ~~E~~g~~~lEAm--a~G~PvI 386 (477)
.+|..+.+.| -+|+|.+
T Consensus 223 ---~~g~~~a~~Lee~~GiP~~ 241 (426)
T cd01972 223 ---DLGYYLGAALEQRFGVPEI 241 (426)
T ss_pred ---hHHHHHHHHHHHHhCCCeE
Confidence 2467788887 4899999
No 333
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=44.74 E-value=1.9e+02 Score=28.79 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=26.4
Q ss_pred EEEEeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC
Q 011779 273 FAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (477)
Q Consensus 273 il~vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~ 318 (477)
|+.+|...- ..|-+.++.++-+-.+ + ..|++.+.|....+
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~---~---~~p~~~i~v~S~~P 43 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAIN---I---LNPHAEVDVMSRYP 43 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHH---h---hCCCCeEEEEecCc
Confidence 455565444 6777777776654322 2 66999999998864
No 334
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=44.73 E-value=46 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=29.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
||+|+++..+.. |.++..+..++..|...|++|.+..
T Consensus 1 M~ki~Ivy~S~t-GnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGSRT-GNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEcCC-CcHHHHHHHHHHHhccCCceEEEee
Confidence 567777775443 7788999999999999999995554
No 335
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=44.04 E-value=2.4e+02 Score=26.18 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=11.2
Q ss_pred HHHHhCCcEEEEEecC
Q 011779 98 FLLRGVGTKVNWITIQ 113 (477)
Q Consensus 98 ~~L~~~G~~V~v~~~~ 113 (477)
..+++.|++|++++..
T Consensus 22 A~~a~~G~~V~vV~~T 37 (283)
T TIGR03446 22 ARYAAEGHDVMVVTCT 37 (283)
T ss_pred HHHHHCCCeEEEEEec
Confidence 3456679999888743
No 336
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=44.02 E-value=43 Score=29.02 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=29.5
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCC-cEEEEEecCC
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVG-TKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G-~~V~v~~~~~ 114 (477)
||||++..+..+ ++.. .....+++.+.+.| ++|.++-...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~ 43 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYE 43 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 789988876665 5554 56778999999999 9999987443
No 337
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=43.85 E-value=46 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=26.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
||+|++-..- -|-....+..+|..|.+.|++|.+.-.
T Consensus 1 Mk~LIlYstr-~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTR-DGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecC-CCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 5666665322 244447889999999999999999753
No 338
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=43.79 E-value=1.6e+02 Score=28.09 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=46.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++.... .+.+..++..++..|.++.++++..-.................|..+......... ....|
T Consensus 155 ~g~~ia~vGD~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea--~~~aD 227 (336)
T PRK03515 155 NEMTLAYAGDAR-----NNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEG--VKGAD 227 (336)
T ss_pred CCCEEEEeCCCc-----CcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 346888886421 14678888888899999999997543333222222222334456555443333322 24789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 228 vvytd~ 233 (336)
T PRK03515 228 FIYTDV 233 (336)
T ss_pred EEEecC
Confidence 998864
No 339
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=43.76 E-value=1e+02 Score=31.52 Aligned_cols=36 Identities=19% Similarity=-0.014 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+|++++...+.||= -.-.|+.|...|++|.|+...
T Consensus 136 ~~VlVlcGpGNNGGD---GLVaAR~L~~~G~~V~V~~~~ 171 (544)
T PLN02918 136 SRVLAICGPGNNGGD---GLVAARHLHHFGYKPFVCYPK 171 (544)
T ss_pred CEEEEEECCCcCHHH---HHHHHHHHHHCCCceEEEEcC
Confidence 479999987777663 344567788899999999844
No 340
>PLN02778 3,5-epimerase/4-reductase
Probab=43.71 E-value=96 Score=28.98 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=23.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEE
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (477)
.+.||||+.. |....=..|++.|.++|++|++.
T Consensus 7 ~~~~kiLVtG------~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIYG------KTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEEC------CCCHHHHHHHHHHHhCCCEEEEe
Confidence 3457877654 33355668889999999999754
No 341
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=43.62 E-value=40 Score=32.85 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=33.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEE-Ee-cCCCCChhhHHhhhhhhhhhcCcEEEeccchh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW-IT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE 143 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v-~~-~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 143 (477)
|||+++..+. +-.+....|++.||+|.+ +| ++.....+ .+.-.....|++++....++
T Consensus 1 mkiaiigqs~-------fg~~vy~~lrk~gheiv~vftipdk~g~~d----~l~~ea~kdgvpv~k~srwr 60 (881)
T KOG2452|consen 1 MKIAVIGQSL-------FGQEVYCHLRKEGHEVVGVFTVPDKDGKAD----PLGLEAEKDGVPVFKYSRWR 60 (881)
T ss_pred CeeEEechhh-------hhHHHHHHHHhcCceEEEEEEecCCCCCcC----cccccccccCcceechhhhh
Confidence 5787776543 345667889999999764 44 33322222 23334445677776554443
No 342
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=43.57 E-value=1.2e+02 Score=28.56 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCceE-E-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-ccCCHHHHH----Hhc
Q 011779 285 QDLFLHSFYESLELIKEKKLEVPSVH-A-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYL----AAI 357 (477)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~-l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~l~~~~----~~a 357 (477)
++.-++.++.+. |+++ + +++.++.+.....-+++++.+++.|+. -+...- ...|+...+ ...
T Consensus 145 v~q~i~lik~~~----------Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~-vve~~v~~~ndi~~a~~~l~g~~ 213 (322)
T COG2984 145 VAQQIELIKALL----------PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE-VVEAAVTSVNDIPRAVQALLGKV 213 (322)
T ss_pred HHHHHHHHHHhC----------CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE-EEEEecCcccccHHHHHHhcCCC
Confidence 444555555543 6654 3 567777655566788889999988884 222222 345554443 557
Q ss_pred CEEEEcCCCCCC--cccHHHHHHHHcCCCEEeeccccccccCC
Q 011779 358 DVLVQNSQAWGE--CFGRITIEAMAFQLPVLLQKCLYQGTAAG 398 (477)
Q Consensus 358 Dv~v~pS~~~~E--~~g~~~lEAma~G~PvI~~~~~~~~~~~g 398 (477)
|++..|... .. ++...+.+|...++|++ +++.+
T Consensus 214 d~i~~p~dn-~i~s~~~~l~~~a~~~kiPli-------~sd~~ 248 (322)
T COG2984 214 DVIYIPTDN-LIVSAIESLLQVANKAKIPLI-------ASDTS 248 (322)
T ss_pred cEEEEecch-HHHHHHHHHHHHHHHhCCCee-------cCCHH
Confidence 998888652 22 34456889999999999 66663
No 343
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=43.49 E-value=59 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|||+++..+...++-. ..+...++.+.+.|++|.++...
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 5899988777666655 45556677888899999988744
No 344
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=43.47 E-value=1.4e+02 Score=22.36 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH---cCCCEEeeccccccccC
Q 011779 323 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLPVLLQKCLYQGTAA 397 (477)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G~PvI~~~~~~~~~~~ 397 (477)
.....+++..+..|+. .+......++....+.. .|++++-... ...-|..+++.+. .+.|+|+ .++.
T Consensus 9 ~~~~~l~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~d~iiid~~~-~~~~~~~~~~~i~~~~~~~~ii~------~t~~ 80 (112)
T PF00072_consen 9 EIRELLEKLLERAGYE-EVTTASSGEEALELLKKHPPDLIIIDLEL-PDGDGLELLEQIRQINPSIPIIV------VTDE 80 (112)
T ss_dssp HHHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHSTESEEEEESSS-SSSBHHHHHHHHHHHTTTSEEEE------EESS
T ss_pred HHHHHHHHHHHhCCCC-EEEEECCHHHHHHHhcccCceEEEEEeee-ccccccccccccccccccccEEE------ecCC
Confidence 3455555666644431 33433333444444433 5777766542 3344555555444 3677773 3333
Q ss_pred CC---ceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 398 GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 398 gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
.. ..+.++.|..|++..|-+ .+++.++|+
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~ 112 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKPFS--PEELRAAIN 112 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESSSS--HHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEECCCC--HHHHHHhhC
Confidence 33 234456678899999988 898888764
No 345
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=43.31 E-value=41 Score=31.05 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+|. +.||.. ....+||.+|+++|+.|.++-.+.
T Consensus 2 ~~i~~~----gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 2 RKFCFY----GKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred cEEEEE----CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 445555 266766 567899999999999999986443
No 346
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.74 E-value=3.3e+02 Score=26.47 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=66.8
Q ss_pred HHHHHHhhCCC---CCCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 257 REHVRESLGVR---NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 257 ~~~~r~~~~~~---~~~~~il~vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
+..+.+++|++ ++.++|... ...+. +..++++++.. ...+.++|.++- -...+.+..
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF---~Ye~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~~~ 228 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLF---CYENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAAWL 228 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEE---eCCchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHHHh
Confidence 67788899985 444555433 34444 77777777743 245777776653 344443333
Q ss_pred H----hcC---CC--CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 333 M----QKK---IQ--DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 333 ~----~~~---l~--~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
. ..| .. -.+.+++++ ++...++-.||+-+.- +|- +.+=|+-+|+|.|
T Consensus 229 ~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR----GED---SfVRAqwAgkPFv 286 (374)
T PF10093_consen 229 GDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVR----GED---SFVRAQWAGKPFV 286 (374)
T ss_pred ccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEe----cch---HHHHHHHhCCCce
Confidence 2 001 11 246677774 8899999999997754 443 5788999999999
No 347
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=42.37 E-value=50 Score=29.79 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=26.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+.|++++.... -|......+|+..|++.|..|.++-..
T Consensus 2 ~~iai~s~kGG-vG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGG-VGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCC-CCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34544443221 233477889999999999999998754
No 348
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.33 E-value=2.5e+02 Score=26.65 Aligned_cols=79 Identities=25% Similarity=0.225 Sum_probs=49.2
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------hhH
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------ETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----------~~~ 145 (477)
-|||+. .+-.|=.+.+-.||..|.+.|+.|.+...+.- .......+...-.+.|++++..+.- -..
T Consensus 141 Vil~vG--VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF--RAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 141 VILFVG--VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF--RAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred EEEEEe--cCCCchHhHHHHHHHHHHHCCCeEEEEecchH--HHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 355554 22235557789999999999999999885432 2233334555566778888764311 022
Q ss_pred HHhcCCcEEEEcC
Q 011779 146 NTALKADLIVLNT 158 (477)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (477)
.+..++|+|++-+
T Consensus 217 Akar~~DvvliDT 229 (340)
T COG0552 217 AKARGIDVVLIDT 229 (340)
T ss_pred HHHcCCCEEEEeC
Confidence 2446777777765
No 349
>PRK12861 malic enzyme; Reviewed
Probab=42.23 E-value=2.4e+02 Score=30.37 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=52.6
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccc------------------------cCCHHHHHHhcCE
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 359 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~------------------------~~~l~~~~~~aDv 359 (477)
+..+.++++.|.| .-.-.+-++....|+. .+|.+... ...+.+.+..+|+
T Consensus 186 ~l~d~~iv~~GAG-----aAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~adv 260 (764)
T PRK12861 186 SIKEVKVVTSGAG-----AAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADV 260 (764)
T ss_pred ChhHcEEEEECHh-----HHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCE
Confidence 5568899999988 4444455555566764 36655431 1357888899999
Q ss_pred EEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 360 LVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
|+-.|. .--|.--++++|+- .|+|
T Consensus 261 liG~S~--~g~ft~e~v~~Ma~-~PII 284 (764)
T PRK12861 261 FLGLSA--GGVLKAEMLKAMAA-RPLI 284 (764)
T ss_pred EEEcCC--CCCCCHHHHHHhcc-CCEE
Confidence 998886 66677778999987 8888
No 350
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=42.21 E-value=70 Score=30.69 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=38.4
Q ss_pred cEEEEEeccCCCC-chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE--Eecc--chhhHHHhc
Q 011779 75 KLVLLVSHELSLS-GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAK--GQETINTAL 149 (477)
Q Consensus 75 ~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v--~~~~--~~~~~~~~~ 149 (477)
++||++-...... ..-.-+..|.+-|...|.+|.+-+..+.-... .......|-.+ -++. ..+.-.+.+
T Consensus 78 ~~iLlIPEnHTRN~fYl~nv~~L~~I~~~AG~~VriGsl~~~i~e~------~~l~l~~G~~l~lepl~r~~~rl~~~~F 151 (404)
T PF08886_consen 78 KNILLIPENHTRNTFYLENVAQLKRILRQAGFEVRIGSLDPEITEP------TELELPSGETLTLEPLVRKGGRLGLKGF 151 (404)
T ss_dssp SEEEEEE-S-SS-HHHHHHHHHHHHHHHHTT-EEEEEE--TT--S-------EEEE-SSS-EEEEEE-EEETTEEEETTE
T ss_pred ceEEEecCCCcccHHHHHHHHHHHHHHHHcCceEEEcCCCccccCC------eEEecCCCCeEEEEeEEecCCEEeccCC
Confidence 6888887655442 11234667788889999999998755321100 00001122222 1111 111112568
Q ss_pred CCcEEEEcCcchhh
Q 011779 150 KADLIVLNTAVAGK 163 (477)
Q Consensus 150 ~~DiV~~~~~~~~~ 163 (477)
.||+|.+|+...+.
T Consensus 152 ~Pc~ILLNNDLS~G 165 (404)
T PF08886_consen 152 DPCLILLNNDLSAG 165 (404)
T ss_dssp E-SEEEEES--TT-
T ss_pred cCcEEEEcCCcccC
Confidence 99999999865544
No 351
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=42.06 E-value=90 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=27.2
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCC-cEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVG-TKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G-~~V~v~~~~~~ 115 (477)
||+.++....+ -|.+ .....+++++.+.| ++|.+|...++
T Consensus 1 m~~~Ivvt~pp-Yg~q~a~~A~~fA~all~~gh~~v~iFly~Dg 43 (126)
T COG1553 1 MKYTIVVTGPP-YGTESAFSALRFAEALLEQGHELVRLFLYQDG 43 (126)
T ss_pred CeEEEEEecCC-CccHHHHHHHHHHHHHHHcCCeEEEEEEeecc
Confidence 45555554433 3444 66889999999986 68888875544
No 352
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.03 E-value=1.2e+02 Score=26.98 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=50.1
Q ss_pred eecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH-hcCCCCcEEEccccCCHHHHHH
Q 011779 277 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLA 355 (477)
Q Consensus 277 Grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~l~~~~~ 355 (477)
--++|.|- +..-+.++.+.+ -....+++|+...-......++.+.++ +.+++ -+.|.|..+.+. .
T Consensus 20 tliDP~k~-~~~~ei~~~~~~---------~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~~~is---~ 85 (240)
T COG1646 20 TLIDPDKT-EEADEIAEAAAE---------AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLP-VILFPGSPSGIS---P 85 (240)
T ss_pred EEeCcccc-cccHHHHHHHHH---------cCCCEEEECCcccccHHHHHHHHHHHHhhcCCC-EEEecCChhccC---c
Confidence 35678773 333344444433 345668888753333233444444444 66674 677777655444 3
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
.+|.+++||.- .-.-+.=+..|..-|.|.+
T Consensus 86 ~aDavff~svL-NS~n~~~i~gaq~~~a~~~ 115 (240)
T COG1646 86 YADAVFFPSVL-NSDNPYWIVGAQVEGAKLV 115 (240)
T ss_pred cCCeEEEEEEe-cCCCcccccchhhhhhHHH
Confidence 79999888863 2222222333444444444
No 353
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=41.97 E-value=2.7e+02 Score=25.34 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=27.0
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
++.+.+. ..|+++-.|.. .--|---++++|+ +..|+|
T Consensus 97 ~L~eav~~~kptvlIG~S~~-~g~ft~evv~~Ma~~~~~PII 137 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRV-GGAFTPEVIRAXAEINERPVI 137 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCC-CCCCCHHHHHHHhhcCCCCEE
Confidence 5677777 88999987761 3346667899998 456887
No 354
>PRK07206 hypothetical protein; Provisional
Probab=41.95 E-value=1.1e+02 Score=30.22 Aligned_cols=35 Identities=20% Similarity=-0.050 Sum_probs=25.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
||++++++.+.. .-..+++++++.|+++.+++...
T Consensus 1 ~~k~~liv~~~~-------~~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 1 MMKKVVIVDPFS-------SGKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CCCeEEEEcCCc-------hHHHHHHHHHHcCCeEEEEEcCC
Confidence 456788887632 12358889999999999888554
No 355
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=41.69 E-value=64 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++.|+|++.. |..-.=..+++.|.+.|++|.++....
T Consensus 2 ~~~k~ilItG------atG~IG~~l~~~L~~~G~~V~~~~r~~ 38 (349)
T TIGR02622 2 WQGKKVLVTG------HTGFKGSWLSLWLLELGAEVYGYSLDP 38 (349)
T ss_pred cCCCEEEEEC------CCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence 4456765544 222345688899999999998876443
No 356
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.55 E-value=45 Score=27.84 Aligned_cols=37 Identities=32% Similarity=0.330 Sum_probs=25.8
Q ss_pred HHHHHHh-cCEEEEcCCC--CCCccc--HHHHHHHHcCCCEE
Q 011779 350 VAPYLAA-IDVLVQNSQA--WGECFG--RITIEAMAFQLPVL 386 (477)
Q Consensus 350 l~~~~~~-aDv~v~pS~~--~~E~~g--~~~lEAma~G~PvI 386 (477)
+...+.. +|++|++-.. +.||-| -.+.+|++.|+||+
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVL 127 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVL 127 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEE
Confidence 4444544 8999987543 233444 46899999999999
No 357
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=41.52 E-value=1.8e+02 Score=27.75 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=44.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++.... ...+..++..++..|.+|.++++..-.................|..+......... ....|
T Consensus 155 ~gl~ia~vGD~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a--~~~aD 227 (334)
T PRK01713 155 SEISYVYIGDAR-----NNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKA--VKGVD 227 (334)
T ss_pred CCcEEEEECCCc-----cCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 346888886421 13678888899999999999986543332222211122223345555333332222 24788
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|++.
T Consensus 228 vVyt~ 232 (334)
T PRK01713 228 FVHTD 232 (334)
T ss_pred EEEEc
Confidence 88875
No 358
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=41.50 E-value=59 Score=27.10 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
..++|+++. | .......++.|.+.|++|+|+.
T Consensus 12 ~~~~vlVvG------G-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIG------G-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEEC------C-CHHHHHHHHHHHhCCCEEEEEc
Confidence 445666653 3 3678889999999999999995
No 359
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=41.41 E-value=82 Score=28.30 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 358 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aD 358 (477)
..+|+.++++.++ |++.++++|+| +.++ +.++.++.| +.-++...++...+.+-+
T Consensus 216 ~~cFe~I~~Rfg~-----p~~~f~~IGDG-----~eEe---~aAk~l~wP--Fw~I~~h~Dl~~l~~aL~ 270 (274)
T TIGR01658 216 LQCFKWIKERFGH-----PKVRFCAIGDG-----WEEC---TAAQAMNWP--FVKIDLHPDSSHRFPGLT 270 (274)
T ss_pred HHHHHHHHHHhCC-----CCceEEEeCCC-----hhHH---HHHHhcCCC--eEEeecCCCHHHhCccCC
Confidence 4677777776554 78999999999 3332 445556554 222233356665555433
No 360
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=41.41 E-value=55 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=28.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (477)
|||+++..+.. |-.++.+..+++.+.+ .|.+|.++...
T Consensus 2 ~kilIvy~S~~-G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMY-GHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCC-CHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 57888875542 4455778888888887 99999998854
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.00 E-value=1.8e+02 Score=29.32 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=42.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++. +|. .-...++.|.++|++|+++-..+... ...+...+...|++++.-.... ....+|
T Consensus 15 ~~~~v~viG-----~G~--~G~~~A~~L~~~G~~V~~~d~~~~~~----~~~~~~~l~~~gv~~~~~~~~~---~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAG-----LGV--SGFAAADALLELGARVTVVDDGDDER----HRALAAILEALGATVRLGPGPT---LPEDTD 80 (480)
T ss_pred CCCEEEEEC-----CCH--HHHHHHHHHHHCCCEEEEEeCCchhh----hHHHHHHHHHcCCEEEECCCcc---ccCCCC
Confidence 445777774 121 23346899999999999875332211 1122344566788876433222 235689
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 81 ~Vv~s~ 86 (480)
T PRK01438 81 LVVTSP 86 (480)
T ss_pred EEEECC
Confidence 998765
No 362
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=40.85 E-value=86 Score=29.25 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=37.3
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-----EeccchhhHHHhcCCcEEEE
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISAKGQETINTALKADLIVL 156 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-----~~~~~~~~~~~~~~~DiV~~ 156 (477)
||+.-.=...+.+|.+.||+|+|+-.-...... .+...-+++ ..-.....+..+.++|.|+-
T Consensus 7 GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~--------~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKI--------ALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred cCcchhHHHHHHHHHHCCCeEEEEecCCCCCHH--------HhhhccCceEEeccccHHHHHHHHHhcCCCEEEE
Confidence 566666678889999999999999844333222 111110222 22233456777889998754
No 363
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=40.82 E-value=68 Score=26.27 Aligned_cols=38 Identities=26% Similarity=0.159 Sum_probs=25.4
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|.++++ .+..|....+.+||..|++.|+.|.++-....
T Consensus 3 i~v~s~-~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 3 IAVWSP-KGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEES-STTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 344443 33356678899999999999999888775443
No 364
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=40.74 E-value=1.8e+02 Score=23.05 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=38.6
Q ss_pred cEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE
Q 011779 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI 403 (477)
Q Consensus 340 ~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~ 403 (477)
.|.+.... +++.+.+..+|+++..+. ..+.-.+++++ -++.+| ++...|...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~---~~~~~~~l~~~-~~Lk~I-------~~~~~G~d~i 74 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSG---TPLTAEVLEAA-PNLKLI-------STAGAGVDNI 74 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTT---STBSHHHHHHH-TT-SEE-------EESSSSCTTB
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCC---CCcCHHHHhcc-ceeEEE-------EEcccccCcc
Confidence 56666643 668889999999997654 24777788888 899999 7777776543
No 365
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=40.69 E-value=1.9e+02 Score=27.82 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=54.3
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC-ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
+++.++.+|. .. | ...++++.++ + +++++-+-+. ..+..++.++++|++ ..
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~-------~y 53 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP-------LY 53 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC-------cc
Confidence 3467777886 32 3 2355666543 5 6777755553 356667888888753 12
Q ss_pred CCHHHHHHhcCE--EEEcCCCCCCcc-cHHHHHHHHcCCCEEe
Q 011779 348 LTVAPYLAAIDV--LVQNSQAWGECF-GRITIEAMAFQLPVLL 387 (477)
Q Consensus 348 ~~l~~~~~~aDv--~v~pS~~~~E~~-g~~~lEAma~G~PvI~ 387 (477)
+++.++++..|+ +..|+.. .-+. .-.+.+|+..|+.|++
T Consensus 54 ~~~eell~d~Di~~V~ipt~~-P~~~H~e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 54 CEVEELPDDIDIACVVVRSAI-VGGQGSALARALLARGIHVLQ 95 (343)
T ss_pred CCHHHHhcCCCEEEEEeCCCC-CCccHHHHHHHHHhCCCeEEE
Confidence 567777776555 4444320 1122 2357889999999993
No 366
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=40.67 E-value=1.8e+02 Score=22.84 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhc-CEEE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 361 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~a-Dv~v 361 (477)
.|....++++++ ..++++|+....+. ......+..+++..+++ +.+.+..+++....... .+.+
T Consensus 29 ~G~~~v~kaikk------------gka~LVilA~D~s~-~~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk~~~~sv 93 (117)
T TIGR03677 29 KGTNEVTKAVER------------GIAKLVVIAEDVEP-PEIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGLEVGAAS 93 (117)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCc-HHHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCCCeEE
Confidence 477777777763 56788877765321 02468899999999986 67777778888887763 4444
Q ss_pred EcCCCCCCcccHHHHHH
Q 011779 362 QNSQAWGECFGRITIEA 378 (477)
Q Consensus 362 ~pS~~~~E~~g~~~lEA 378 (477)
+.-. .+||.-.++.-
T Consensus 94 vaI~--d~g~a~~~~~~ 108 (117)
T TIGR03677 94 AAIV--DEGKAEELLKE 108 (117)
T ss_pred EEEE--chhhhHHHHHH
Confidence 4444 56666554443
No 367
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.66 E-value=3.5e+02 Score=26.20 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=60.0
Q ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc---------hHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 275 ~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~---------~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
++|- ..-..-+.+++.++.+.+ ..++++..|.-.+.. .+....+.+..++.|++ +.-..
T Consensus 122 iaGp-c~iE~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~--~~t~v 189 (360)
T PRK12595 122 IFGP-CSVESYEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA--VISEI 189 (360)
T ss_pred EEec-ccccCHHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC--EEEee
Confidence 4454 233456778888887755 345566555322211 13456778888888885 22222
Q ss_pred c-cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH-HcCCCEEee
Q 011779 346 K-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLLQ 388 (477)
Q Consensus 346 ~-~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~~ 388 (477)
+ ..++..+...+|++-.+|. +..-..+++++ ..|+||+.+
T Consensus 190 ~d~~~~~~l~~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 190 VNPADVEVALDYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLK 231 (360)
T ss_pred CCHHHHHHHHHhCCeEEECcc---cccCHHHHHHHHccCCcEEEe
Confidence 2 2556666666999999996 44445566555 569999954
No 368
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=40.61 E-value=2.5e+02 Score=25.35 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=52.0
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CC------HHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LT------VAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~------l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
.+.-++++-|+......+..+.+++.+.+.|++..-+++... +. ..+++..-++.|.+|. =+.+..+.-
T Consensus 80 gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~---fHm~RA~~i 156 (239)
T PRK10834 80 GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR---FHCERALFI 156 (239)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHH
Confidence 355578888875433334566788888899998776666542 22 2334444456666664 467788888
Q ss_pred HHHcCCCEE
Q 011779 378 AMAFQLPVL 386 (477)
Q Consensus 378 Ama~G~PvI 386 (477)
|-..|..++
T Consensus 157 a~~~Gi~~~ 165 (239)
T PRK10834 157 ALHMGIQAQ 165 (239)
T ss_pred HHHcCCceE
Confidence 999999988
No 369
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=40.50 E-value=86 Score=28.58 Aligned_cols=77 Identities=22% Similarity=0.218 Sum_probs=44.7
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCCh-----hhHHhhhhhhhhhcCcEEEeccch-------------hhHHHh
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-----DEVIYSLEHKMWDRGVQVISAKGQ-------------ETINTA 148 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-----~~~~~~~~~~~~~~g~~v~~~~~~-------------~~~~~~ 148 (477)
.|-+..+..|.+.|.+.|+.|-|++.++..+. -.....+.....+.++-+-+.... -.+...
T Consensus 40 aGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~a 119 (266)
T PF03308_consen 40 AGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDA 119 (266)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHH
Confidence 35558899999999999999999995543321 111122333334456666444332 244566
Q ss_pred cCCcEEEEcCcchhh
Q 011779 149 LKADLIVLNTAVAGK 163 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (477)
..+|+|++.+...+.
T Consensus 120 aG~D~IiiETVGvGQ 134 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQ 134 (266)
T ss_dssp TT-SEEEEEEESSST
T ss_pred cCCCEEEEeCCCCCc
Confidence 899999999976555
No 370
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=40.47 E-value=77 Score=23.39 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhCC---cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCc
Q 011779 90 PLLLMELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 159 (477)
Q Consensus 90 ~~~~~~l~~~L~~~G---~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~ 159 (477)
...-..+++.|.+.| ++|.+++...+. .........++.+..... .... .+.|+|++..+
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~~-------~~~~~~~~~~~~~~~~~~-~~~~--~~advvilav~ 70 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVSSRSPE-------KAAELAKEYGVQATADDN-EEAA--QEADVVILAVK 70 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEEESSHH-------HHHHHHHHCTTEEESEEH-HHHH--HHTSEEEE-S-
T ss_pred CHHHHHHHHHHHHCCCCceeEEeeccCcHH-------HHHHHHHhhccccccCCh-HHhh--ccCCEEEEEEC
Confidence 378889999999999 999988644432 122223344555544222 2222 36899988763
No 371
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.26 E-value=1.4e+02 Score=27.77 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=45.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------- 141 (477)
++|||+++.+.. ..-+..|..+.... +++|.++.++.+. ........|++++....
T Consensus 88 ~~~ri~vl~Sg~-----gsnl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK06027 88 ERKRVVILVSKE-----DHCLGDLLWRWRSGELPVEIAAVISNHDD--------LRSLVERFGIPFHHVPVTKETKAEAE 154 (286)
T ss_pred cCcEEEEEEcCC-----CCCHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEeccCccccchhH
Confidence 457888877433 24577777776653 5788777655542 22235667888765321
Q ss_pred --hhhHHHhcCCcEEEEcC
Q 011779 142 --QETINTALKADLIVLNT 158 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (477)
.....+..++|+|++-.
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 12334568999999864
No 372
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=40.18 E-value=1.3e+02 Score=26.76 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred EEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 76 LVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
+|..+++. .||.. ....++..+|+++|+.|.++-.+-+-
T Consensus 3 ~iIVvTSG--KGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 3 RIIVVTSG--KGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred eEEEEecC--CCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 46666643 35555 66779999999999999999866553
No 373
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=40.16 E-value=69 Score=29.18 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
++|+||+........ .=+..|+++|.+.| +|+|+.+....
T Consensus 4 ~~M~ILltNDDGi~a---~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGIEG---EGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCCCC---HHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 457898777543221 23778888998888 89999866543
No 374
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=40.15 E-value=54 Score=31.97 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=33.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..++++.|....|.-+.++..++..++++|++|.|+-..
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCC
Confidence 357778888877777799999999999999999999744
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.14 E-value=2.4e+02 Score=27.87 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=51.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh----------hH
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE----------TI 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~----------~~ 145 (477)
.|+++. +.-+|-.+.+-.||.+|.++|+.|.+++.+.-.+.. ...+.......++++++..... ..
T Consensus 102 vImmvG--LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA--~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 102 VILMVG--LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA--IEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred EEEEEe--ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH--HHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 355554 443566688899999999999999999865433221 2234445566788887763211 22
Q ss_pred HHhcCCcEEEEcCc
Q 011779 146 NTALKADLIVLNTA 159 (477)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (477)
.+...+|+|++.+.
T Consensus 178 ak~~~~DvvIvDTA 191 (451)
T COG0541 178 AKEEGYDVVIVDTA 191 (451)
T ss_pred HHHcCCCEEEEeCC
Confidence 23467899999873
No 376
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=40.08 E-value=2.1e+02 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.2
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+..+-..+++.|.+.|++|.++-..
T Consensus 8 ggd~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 8 GGDARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 45677889999999999999999754
No 377
>PRK07714 hypothetical protein; Provisional
Probab=40.01 E-value=1.6e+02 Score=22.22 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~ 362 (477)
-|.+..++++++ ..++++|+.+..+. ...+.+...++..+++ +.+.+..+++...+......+.
T Consensus 21 ~G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~~~~~v 84 (100)
T PRK07714 21 SGEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKDERVVV 84 (100)
T ss_pred ecHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCCcceEE
Confidence 366777777764 45788877765322 3577788888877764 3445555778777766543333
Q ss_pred cCCCCCCcccHHHHHH
Q 011779 363 NSQAWGECFGRITIEA 378 (477)
Q Consensus 363 pS~~~~E~~g~~~lEA 378 (477)
.-. .++|.-.+++.
T Consensus 85 ai~--d~g~a~~l~~~ 98 (100)
T PRK07714 85 AVL--DEGFAKKLRSM 98 (100)
T ss_pred EEe--CchhHHHHHHH
Confidence 333 56666555553
No 378
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=39.98 E-value=51 Score=31.46 Aligned_cols=43 Identities=21% Similarity=-0.029 Sum_probs=30.6
Q ss_pred CCccEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+++||+++....+. --.. ......+++|.+.||+|..+....
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 567899999854433 1122 456688999999999999887443
No 379
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=39.97 E-value=50 Score=30.28 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=23.1
Q ss_pred CCchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 86 LSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 86 ~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.||.. ....+||..|+++|++|.++-.+
T Consensus 10 KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 56666 55789999999999999998644
No 380
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=39.95 E-value=1.2e+02 Score=30.21 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=39.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
|+||||++. +| .+...++..|++.|++|.++......... ...... ..+..........+.+..++|
T Consensus 1 ~~~kVLvlG-----~G--~re~al~~~l~~~g~~v~~~~~~~Npg~~----~~a~~~--~~~~~~d~e~l~~~~~~~~id 67 (435)
T PRK06395 1 MTMKVMLVG-----SG--GREDAIARAIKRSGAILFSVIGHENPSIK----KLSKKY--LFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred CceEEEEEC-----Cc--HHHHHHHHHHHhCCCeEEEEECCCChhhh----hcccce--eecCCCCHHHHHHHHHHhCCC
Confidence 468999854 22 35677888888889887777532111100 000000 001111222334566778999
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|++..
T Consensus 68 ~Vi~~~ 73 (435)
T PRK06395 68 IVFVGP 73 (435)
T ss_pred EEEECC
Confidence 999864
No 381
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=39.29 E-value=48 Score=30.34 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.4
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+|.+. ..||.. ....+||.+|+++|++|.++-.+
T Consensus 1 ~~i~~~----gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVY----GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEE----cCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 445555 256766 55789999999999999998644
No 382
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.74 E-value=2.3e+02 Score=23.58 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=59.8
Q ss_pred EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHH-----hcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA-----AIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 312 ~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~-----~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
+|.|+.+ +.+..++.....+++|++-.+...+-. +++.++.+ ..++++.-.- .++ .+.-.=|...-+
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG--~aa-~Lpgvva~~t~~ 77 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG--GAA-HLPGMVAALTPL 77 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC--ccc-hhHHHHHhccCC
Confidence 4566542 224556666666777877667666642 55555554 3566665443 221 233333566678
Q ss_pred CEEeeccccccccCCCceE---EeecCCce---eeecCCC-CCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 384 PVLLQKCLYQGTAAGGTTE---IVVNGTTG---LLHPVGK-EGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e---~v~~~~~G---~l~~~~d-~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
|||..|+. +...+|... +++. -.| -.+.-++ .+..-+|.+|..+ .|+++++++.+
T Consensus 78 PVIgvP~~--~~~l~G~daLlS~vqm-P~gvpvatv~I~~~~nAa~~AaqIl~~-~d~~l~~kl~~ 139 (156)
T TIGR01162 78 PVIGVPVP--SKALSGLDSLLSIVQM-PSGVPVATVAIGNAGNAALLAAQILGI-KDPELAEKLKE 139 (156)
T ss_pred CEEEecCC--ccCCCCHHHHHHHhcC-CCCCeeEEEEcCChhHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 88844333 222333322 2221 011 1111111 1145566666543 57887777644
No 383
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=38.71 E-value=2.2e+02 Score=26.87 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 324 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
..+..++.+++++++ -..+++.++++. .|+++..+- ...-.-.++.|+..|++|+
T Consensus 39 ~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 39 DPERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVL 95 (342)
T ss_pred CHHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEE
Confidence 456678888888765 123678888887 588888876 4433445699999999999
No 384
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=38.54 E-value=4.7e+02 Score=27.12 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=48.8
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHh-cCCC-----CcEEEccc-------c------------------CCHHHH
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQ-----DRVHFVNK-------T------------------LTVAPY 353 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~-----~~v~~~g~-------~------------------~~l~~~ 353 (477)
...+.+++|+|.|...- .-.+.+.+...+ .|+. .+|.+... . .++.+.
T Consensus 318 ~l~d~riv~~GAGsAgi-gia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 396 (581)
T PLN03129 318 DLADQRILFAGAGEAGT-GIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEA 396 (581)
T ss_pred chhhceEEEECCCHHHH-HHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHH
Confidence 55688999999983211 122223332222 4652 46655442 1 246666
Q ss_pred HHh--cCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 354 LAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 354 ~~~--aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
+.. .|+++-.|.. .-.|---++++|+ +..|+|
T Consensus 397 v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~~rPII 432 (581)
T PLN03129 397 VKAIKPTVLIGLSGV-GGTFTKEVLEAMASLNERPII 432 (581)
T ss_pred HhccCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEE
Confidence 677 8999988851 3457777899998 778888
No 385
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.53 E-value=36 Score=29.77 Aligned_cols=32 Identities=25% Similarity=0.039 Sum_probs=25.8
Q ss_pred eccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 81 SHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 81 ~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
...++-+|-..+..+|++.|.+.+|+|..++.
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 33455567778999999999999999988874
No 386
>PLN03007 UDP-glucosyltransferase family protein
Probab=38.48 E-value=61 Score=32.80 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.1
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+.+|+++. ++.-|--.=+.+|++.|..+|++|++++...
T Consensus 5 ~~hVvlvp--~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 5 KLHILFFP--FMAHGHMIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred CcEEEEEC--CCccccHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 34677666 3333544668999999999999999999653
No 387
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=38.27 E-value=2.5e+02 Score=26.39 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++....+ .+.+..++..++..|.+|.++++..-..... +.......|..+.......... ...|
T Consensus 149 ~g~~va~vGD~~~----~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~----~~~~~~~~G~~v~~~~d~~~a~--~~aD 218 (301)
T TIGR00670 149 DGLKIALVGDLKY----GRTVHSLAEALTRFGVEVYLISPEELRMPKE----ILEELKAKGIKVRETESLEEVI--DEAD 218 (301)
T ss_pred CCCEEEEEccCCC----CcHHHHHHHHHHHcCCEEEEECCccccCCHH----HHHHHHHcCCEEEEECCHHHHh--CCCC
Confidence 4468888773211 3789999999999999999999754322221 1222233466654433333222 4788
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|+..
T Consensus 219 vvyt~ 223 (301)
T TIGR00670 219 VLYVT 223 (301)
T ss_pred EEEEC
Confidence 88884
No 388
>PRK06932 glycerate dehydrogenase; Provisional
Probab=38.25 E-value=2.6e+02 Score=26.44 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc---------cCCHHHHHHhcCEEEE--cCCCCCCccc---H
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---------TLTVAPYLAAIDVLVQ--NSQAWGECFG---R 373 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---------~~~l~~~~~~aDv~v~--pS~~~~E~~g---~ 373 (477)
+-++-|+|-| .-..++.++++.+|. +|..... ..++.++++.||++++ |.. .|+.+ -
T Consensus 147 gktvgIiG~G-----~IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt--~~T~~li~~ 217 (314)
T PRK06932 147 GSTLGVFGKG-----CLGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLT--ETTQNLINA 217 (314)
T ss_pred CCEEEEECCC-----HHHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCC--hHHhcccCH
Confidence 4567777777 556666666666654 3443321 1368899999999874 444 56544 4
Q ss_pred HHHHHHHcCCCEEeeccccccccCCCc
Q 011779 374 ITIEAMAFQLPVLLQKCLYQGTAAGGT 400 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~~~~~~~~gg~ 400 (477)
..++.|--|.-+| .+.-|++
T Consensus 218 ~~l~~mk~ga~lI-------N~aRG~~ 237 (314)
T PRK06932 218 ETLALMKPTAFLI-------NTGRGPL 237 (314)
T ss_pred HHHHhCCCCeEEE-------ECCCccc
Confidence 5788887787788 6666554
No 389
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=38.12 E-value=2.8e+02 Score=24.33 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE--EEcccc-CC-HHHHHHhc
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV--HFVNKT-LT-VAPYLAAI 357 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v--~~~g~~-~~-l~~~~~~a 357 (477)
.|=...+..|+.-+... ..-.++++|..+ .....+++.+...|-. .| .++|-. .+ ....+..=
T Consensus 49 ~kT~~~L~~A~~~i~~~--------~~~~ILfVgTk~----~~~~~v~k~A~~~g~~-~v~~RWlgG~LTN~~~~~~~~P 115 (204)
T PRK04020 49 RKTDERIRIAAKFLSRY--------EPEKILVVSSRQ----YGQKPVQKFAEVVGAK-AITGRFIPGTLTNPSLKGYIEP 115 (204)
T ss_pred HHHHHHHHHHHHHHHHh--------cCCeEEEEeCCH----HHHHHHHHHHHHhCCe-eecCccCCCcCcCcchhccCCC
Confidence 34455555555555431 234678888763 3445566666666532 11 345532 22 22223355
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
|++++.... .| ...+.||...|+|+|+ ..|.-..++.| -+.+|.+|+++ .-...+..++.+.-++
T Consensus 116 dliiv~dp~-~~--~~AI~EA~kl~IP~Ia------ivDTn~dp~~V-----dypIP~Ndds~-~SI~li~~ll~~aIl~ 180 (204)
T PRK04020 116 DVVVVTDPR-GD--AQAVKEAIEVGIPVVA------LCDTDNLTSNV-----DLVIPTNNKGR-KALALVYWLLAREILR 180 (204)
T ss_pred CEEEEECCc-cc--HHHHHHHHHhCCCEEE------EEeCCCCcccC-----ceeECCCCchH-HHHHHHHHHHHHHHHH
Confidence 665554431 23 5789999999999993 23443334443 36677666433 3344444555432222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
++..+.+.-.|+...+.+
T Consensus 181 ------~kg~~~~~~~~~v~~~~f 198 (204)
T PRK04020 181 ------ERGEIKPDEDLPVPVEDF 198 (204)
T ss_pred ------hhCccCCCCCCCcCHHHH
Confidence 222344444565555544
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.12 E-value=3.6e+02 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
...|+++.+. -.|=...+..|+..|..+|..|.+++.+..
T Consensus 241 ~~vI~LVGpt--GvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPT--GVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCC--CCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3456666652 134447788999999999999999886543
No 391
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=38.00 E-value=50 Score=30.18 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|++. . .||.. ....+||.+|+++|++|.++-.+.
T Consensus 2 ~~iav~-~---KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIY-G---KGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEE-e---CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 345554 2 56666 668899999999999999997554
No 392
>PRK05569 flavodoxin; Provisional
Probab=37.91 E-value=78 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=26.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
++|+++-.+ ..|..+..+..+++.+.+.|.+|.+...
T Consensus 2 ~ki~iiY~S-~tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 2 KKVSIIYWS-CGGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred CeEEEEEEC-CCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356666543 2455668888999999999999887753
No 393
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=37.80 E-value=1.7e+02 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 84 LSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 84 ~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
...||.. ..+..|++.|.++|+.|.|++..++.
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 4445555 66889999999999999999966543
No 394
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=37.60 E-value=3e+02 Score=25.98 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=49.3
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc----------cCCHHHHHHhcCEEEE--cCCCCCCcc---c
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----------TLTVAPYLAAIDVLVQ--NSQAWGECF---G 372 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~----------~~~l~~~~~~aDv~v~--pS~~~~E~~---g 372 (477)
+-.+-|+|-| .-..++-++++.+|. +|..... ..++.++++.||++++ |.. .|+- +
T Consensus 145 gktvGIiG~G-----~IG~~vA~~~~~fgm--~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt--~~T~~li~ 215 (311)
T PRK08410 145 GKKWGIIGLG-----TIGKRVAKIAQAFGA--KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLN--EKTKNLIA 215 (311)
T ss_pred CCEEEEECCC-----HHHHHHHHHHhhcCC--EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCC--chhhcccC
Confidence 4566777777 555666666665553 4443321 1468999999998774 444 5654 4
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGT 400 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~ 400 (477)
-..++.|--|.-+| .+.-|++
T Consensus 216 ~~~~~~Mk~~a~lI-------N~aRG~v 236 (311)
T PRK08410 216 YKELKLLKDGAILI-------NVGRGGI 236 (311)
T ss_pred HHHHHhCCCCeEEE-------ECCCccc
Confidence 45788888787777 6655554
No 395
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.57 E-value=68 Score=29.08 Aligned_cols=34 Identities=26% Similarity=0.057 Sum_probs=27.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.+|++++..-+.|| --.-+|+.|..+|++|.|+.
T Consensus 61 ~~V~VlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGG---DGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCch---hHHHHHHHHHHCCCeEEEEE
Confidence 46999998777766 45567888999999999998
No 396
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=37.56 E-value=52 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||++.. .||.. ....+|+.+|+++|+.|.++-.+.
T Consensus 1 m~ia~~g----KGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYG----KGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEEC----CCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4555544 56665 568899999999999999887543
No 397
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=37.49 E-value=37 Score=31.52 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=24.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||++... ...=..+.+.|.++|++|...+..
T Consensus 1 MriLI~Gas------G~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGAS------GFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETTT------SHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CEEEEECCC------CHHHHHHHHHHhhCCCEEEEeCch
Confidence 788877533 245567889999999998887533
No 398
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=37.46 E-value=2.4e+02 Score=26.90 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=44.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
.++|+++.... .+.+..++..++..|.+|+++++..-.................|..+......... ....|+
T Consensus 156 gl~va~vGD~~-----~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a--~~~aDv 228 (334)
T PRK12562 156 EMTLVYAGDAR-----NNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAG--VKGADF 228 (334)
T ss_pred CcEEEEECCCC-----CCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCCE
Confidence 46788776431 24778888889999999999997653332222222222223345444333332222 246788
Q ss_pred EEEcC
Q 011779 154 IVLNT 158 (477)
Q Consensus 154 V~~~~ 158 (477)
|+...
T Consensus 229 vyt~~ 233 (334)
T PRK12562 229 IYTDV 233 (334)
T ss_pred EEEcC
Confidence 88864
No 399
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=37.42 E-value=2.9e+02 Score=24.37 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=50.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc-------cCCHHHHHHhcCEEEEcCCC-------CCC-ccc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------WGE-CFG 372 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-------~~~l~~~~~~aDv~v~pS~~-------~~E-~~g 372 (477)
+.+++++.........+.+++.+..+++|.. .+.++-. ..++.+.+..+|++++..-. |.+ ++-
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 4556666543322234566777777788764 3333322 24567789999998876431 111 122
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGT 400 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~ 400 (477)
-.+-++...|.|++ .+..|..
T Consensus 108 ~~l~~~~~~G~v~~-------G~SAGA~ 128 (217)
T cd03145 108 DALRKVYRGGVVIG-------GTSAGAA 128 (217)
T ss_pred HHHHHHHHcCCEEE-------EccHHHH
Confidence 34666788899999 6666543
No 400
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.31 E-value=1.3e+02 Score=26.94 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=42.8
Q ss_pred EeecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH
Q 011779 276 INSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 354 (477)
Q Consensus 276 vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~ 354 (477)
+--++|.|- .+..+ +.+.. .....+++|+...-......++.+.+++..++ -|.|.|..+. +-
T Consensus 11 ~~liDP~k~~~~~~~---~~~~~---------~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~---i~ 74 (232)
T PRK04169 11 VTLLDPDKPLPDEAL---EAICE---------SGTDAIIVGGSDGVTEENVDELVKAIKEYDLP-VILFPGNIEG---IS 74 (232)
T ss_pred EEEECCCCCCCHHHH---HHHHh---------cCCCEEEEcCCCccchHHHHHHHHHHhcCCCC-EEEeCCCccc---cC
Confidence 345688774 34344 33332 34566788875323333455555666666664 5667776543 33
Q ss_pred HhcCEEEEcCC
Q 011779 355 AAIDVLVQNSQ 365 (477)
Q Consensus 355 ~~aDv~v~pS~ 365 (477)
..+|.+++||.
T Consensus 75 ~~aDa~l~~sv 85 (232)
T PRK04169 75 PGADAYLFPSV 85 (232)
T ss_pred cCCCEEEEEEE
Confidence 44999999985
No 401
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=37.26 E-value=53 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+.|.+. . .||.. ....+|+.+|+++|++|.++-.+.
T Consensus 2 ~~iav~-~---KGGVGKTT~~~nLA~~La~~G~rVLlID~Dp 39 (274)
T PRK13235 2 RKVAIY-G---KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39 (274)
T ss_pred CEEEEe-C---CCCccHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 445555 2 66766 557899999999999999996443
No 402
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=37.15 E-value=4.7e+02 Score=26.74 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=79.8
Q ss_pred cccceeeehhh-HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc
Q 011779 203 VAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281 (477)
Q Consensus 203 ~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~ 281 (477)
-|-++|.|... .+..++++....+++.+.+.-.++ .+.....|.-...+...+.+.++|+++. +
T Consensus 205 pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~vi~~~d---~~~iY~vPl~l~~q~~~~~i~~~l~l~~------------~ 269 (525)
T TIGR00337 205 PDIIICRSSEPLDPSTKDKIALFCDVEEEAVINAHD---VSSIYEVPLLLLKQGLDDYLCRRLNLNC------------D 269 (525)
T ss_pred CCEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCC---CccHhhhhHHHHHCChHHHHHHHhCCCC------------C
Confidence 34455555433 355555565566677666555554 3322222322222333456667777653 1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-cc--CCH----HHHH
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KT--LTV----APYL 354 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~--~~l----~~~~ 354 (477)
..++ +.+..+.+.+.. ....+++-++|+-.+....|. .+.+.....+...++.+.. +. +++ .+.+
T Consensus 270 ~~~~----~~W~~~~~~~~~---~~~~v~IalVGKY~~~~daY~-SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L 341 (525)
T TIGR00337 270 EADL----SEWEELVEKFIN---PKHEVTIGIVGKYVELKDSYL-SVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFL 341 (525)
T ss_pred CCcH----HHHHHHHHHhhC---CCCCcEEEEEeCCcCCHHHHH-HHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhh
Confidence 2222 334444333332 113489999999644333443 3444444444422332222 11 222 1347
Q ss_pred HhcCEEEEcCCCC---CCcccHHHHHHHHcCCCEE
Q 011779 355 AAIDVLVQNSQAW---GECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 355 ~~aDv~v~pS~~~---~E~~g~~~lEAma~G~PvI 386 (477)
...|.+++|.-.. .++.-..+-.|...++|++
T Consensus 342 ~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~L 376 (525)
T TIGR00337 342 KGVDGILVPGGFGERGVEGKILAIKYARENNIPFL 376 (525)
T ss_pred cCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEE
Confidence 7799999886520 1222234556667899999
No 403
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=37.11 E-value=1.7e+02 Score=24.31 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=69.0
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh---cCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
|+-.|+++-+.. ++...+....+.-|.. |.....+++-...... +-++|---. ..|.|+.++|++....
T Consensus 8 pd~~lllvdDD~----~f~~~LaRa~e~RGf~--v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 8 PDKSLLLVDDDT----PFLRTLARAMERRGFA--VVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERR 79 (182)
T ss_pred CCceeEEecCCh----HHHHHHHHHHhccCce--eEeeccHHHHHHHHhcCCCceEEEEeee--cCCCchHHHHHHHhcC
Confidence 555788887764 6788888777777653 3333333332222111 122232223 6789999999998876
Q ss_pred C----EEeeccccccccCCCceE---EeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 384 P----VLLQKCLYQGTAAGGTTE---IVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 384 P----vI~~~~~~~~~~~gg~~e---~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
+ || .|..+.+.. -|+-|..-++..|.| .+++..++.+-
T Consensus 80 ~d~rivv-------LTGy~sIATAV~AvKlGA~~YLaKPAd--aDdi~aAl~~~ 124 (182)
T COG4567 80 ADMRIVV-------LTGYASIATAVEAVKLGACDYLAKPAD--ADDILAALLRR 124 (182)
T ss_pred CcceEEE-------EecchHHHHHHHHHHhhhhhhcCCCCC--hHHHHHHHhhc
Confidence 5 56 677776654 345577779999988 89988888765
No 404
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.03 E-value=2.9e+02 Score=24.30 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=33.9
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-eEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
+.++..|.. + +++-.-.-.|++ ..+-|+. .....+| ..-|-++|.+ -.+||.+|+--++..
T Consensus 168 shlv~Vppg------~--~L~d~l~ssPii-------~ge~g~a~~~~~a~g~~f~fgvdp~~--DPELAlALRlSMEEe 230 (259)
T KOG2884|consen 168 SHLVSVPPG------P--LLSDALLSSPII-------QGEDGGAAAGLGANGMDFEFGVDPED--DPELALALRLSMEEE 230 (259)
T ss_pred ceEEEeCCC------c--cHHHHhhcCcee-------ccCcccccccccccccccccCCCccc--CHHHHHHHHhhHHHH
Confidence 455666653 1 445555667888 6654443 2332111 1223344444 356999998766544
Q ss_pred HHHH
Q 011779 435 ERRL 438 (477)
Q Consensus 435 ~~~~ 438 (477)
..|+
T Consensus 231 r~rQ 234 (259)
T KOG2884|consen 231 RARQ 234 (259)
T ss_pred HHHH
Confidence 4443
No 405
>PLN02928 oxidoreductase family protein
Probab=36.64 E-value=2.8e+02 Score=26.66 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=26.8
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCccc---HHHHHHHHcCCCEE
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFG---RITIEAMAFQLPVL 386 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g---~~~lEAma~G~PvI 386 (477)
..++.++++.||++++..-...|+-+ -..+..|--|.-+|
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI 259 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV 259 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEE
Confidence 36789999999998754321145544 35677777776677
No 406
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=36.61 E-value=1.3e+02 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=29.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++..+...+|+++-.|. .+..--.+..|+..|+|||
T Consensus 60 ~d~~~l~~~~DvVIdfT~--p~~~~~~~~~al~~g~~vV 96 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTT--PEGVLNHLKFALEHGVRLV 96 (266)
T ss_pred CCHHHhcCCCCEEEECCC--hHHHHHHHHHHHHCCCCEE
Confidence 445555356899998887 7777778899999999999
No 407
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=36.58 E-value=1.9e+02 Score=23.99 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc-c----------CCHHHHH
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T----------LTVAPYL 354 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~----------~~l~~~~ 354 (477)
..++.+..++.+. ....+..+++|+.. ...+.+++....+|.. +|..... . .-+.+++
T Consensus 18 ~e~l~~A~~La~~------~g~~v~av~~G~~~----~~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~ 86 (164)
T PF01012_consen 18 LEALEAARRLAEA------LGGEVTAVVLGPAE----EAAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELI 86 (164)
T ss_dssp HHHHHHHHHHHHC------TTSEEEEEEEETCC----CHHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh------cCCeEEEEEEecch----hhHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHH
Confidence 4566666666542 12468888999622 4667777777778774 5655532 1 1244555
Q ss_pred Hh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 355 AA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 355 ~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+. .|++++|+. ..+-.+...=|...|.|++
T Consensus 87 ~~~~~~lVl~~~t--~~g~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 87 KEEGPDLVLFGST--SFGRDLAPRLAARLGAPLV 118 (164)
T ss_dssp HHHT-SEEEEESS--HHHHHHHHHHHHHHT-EEE
T ss_pred HhcCCCEEEEcCc--CCCCcHHHHHHHHhCCCcc
Confidence 55 899999987 6666677777888999998
No 408
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.52 E-value=1.5e+02 Score=27.28 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=52.4
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-CceEEeec---C--CceeeecCCCCCHHHHH
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVN---G--TTGLLHPVGKEGITPLA 424 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~---~--~~G~l~~~~d~~~~~la 424 (477)
..-++.||++|..... .|+|--.++++...+.++| ....+ +....+.+ + +--+..++.. ...++
T Consensus 45 ~~~l~~Adliv~~G~~-~E~w~~k~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~~~~a 114 (276)
T cd01016 45 VEKLQNADVVFYNGLH-LEGKMSDVLSKLGSSKSVI-------ALEDTLDRSQLILDEEEGTYDPHIWFDVKL--WKYAV 114 (276)
T ss_pred HHHHHhCCEEEEcCcC-hHHHHHHHHHHhccCCceE-------EeccCcCcccccccccCCCCCCCcccCHHH--HHHHH
Confidence 3457889999987763 6777677777764445666 22221 11111111 0 1223444444 66777
Q ss_pred HHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 425 KNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 425 ~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
+.|.+.+. ||+..+...+|+.++..+
T Consensus 115 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 142 (276)
T cd01016 115 KAVAEVLSEKLPEHKDEFQANSEAYVEE 142 (276)
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 77777776 787777777777765543
No 409
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=36.45 E-value=2.7e+02 Score=26.62 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=44.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++...- .+.+..++..+...|.+|.++++..-.................|..+......... ....|
T Consensus 154 ~g~~va~vGd~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~aD 226 (331)
T PRK02102 154 KGLKLAYVGDGR-----NNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEA--VKGAD 226 (331)
T ss_pred CCCEEEEECCCc-----ccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 457888885321 24788888899999999999997654333222211112223345544333322222 24678
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|+..
T Consensus 227 vvyt~ 231 (331)
T PRK02102 227 VIYTD 231 (331)
T ss_pred EEEEc
Confidence 88874
No 410
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=36.24 E-value=1.7e+02 Score=29.44 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=23.6
Q ss_pred cEEEEEecc----------CCCCchh-hHHHHHHHHHHhC--------C----cEEEEEecC
Q 011779 75 KLVLLVSHE----------LSLSGGP-LLLMELAFLLRGV--------G----TKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~----------~~~gG~~-~~~~~l~~~L~~~--------G----~~V~v~~~~ 113 (477)
-+|+++++. .+-.||+ .++.+++++|.+. | .+|.++|.-
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRl 334 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRL 334 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE-
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeeccc
Confidence 467777753 1114555 8899999999752 4 358888843
No 411
>PLN02285 methionyl-tRNA formyltransferase
Probab=36.13 E-value=1.5e+02 Score=28.40 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=39.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHh--CCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcE---EEeccc--
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG--VGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQ---VISAKG-- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~---v~~~~~-- 141 (477)
++|||+|+..... + ...+..|...... .+++|..+....+..... ...+........|++ ++....
T Consensus 5 ~~~kI~f~Gt~~f--a-~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~ 81 (334)
T PLN02285 5 RKKRLVFLGTPEV--A-ATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAG 81 (334)
T ss_pred CccEEEEEECCHH--H-HHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccC
Confidence 4578988864320 1 1223333333221 368877655443332110 111234445566887 432211
Q ss_pred ---hhhHHHhcCCcEEEEcC
Q 011779 142 ---QETINTALKADLIVLNT 158 (477)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||++++-.
T Consensus 82 ~~~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 82 EEDFLSALRELQPDLCITAA 101 (334)
T ss_pred CHHHHHHHHhhCCCEEEhhH
Confidence 12334567999998853
No 412
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=36.08 E-value=3.3e+02 Score=26.08 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCCcEEEEEec-CCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcC
Q 011779 91 LLLMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~-~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~ 158 (477)
+....++..+...|.+|+++++ ..-.................|..+......... ....|+|+...
T Consensus 186 ~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~aDvvy~~~ 252 (335)
T PRK04523 186 AVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSA--YAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCCEEEece
Confidence 7888999999999999999997 432222222211122233456555433332222 34788888853
No 413
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=36.04 E-value=4e+02 Score=28.71 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=52.3
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccc------------------------cCCHHHHHHhcCE
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 359 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~------------------------~~~l~~~~~~aDv 359 (477)
+..+.++++.|.| .-.-.+-++....|+. .+|.+... ..++.+.+..+|+
T Consensus 182 ~~~~~~iv~~GaG-----aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v 256 (752)
T PRK07232 182 KIEDVKIVVSGAG-----AAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADV 256 (752)
T ss_pred ChhhcEEEEECcc-----HHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCE
Confidence 5678899999998 4444455555556764 45554321 1357888899999
Q ss_pred EEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 360 LVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
|+-.|. .--|.--+++.|+ ..|+|
T Consensus 257 ~iG~s~--~g~~~~~~v~~M~-~~pii 280 (752)
T PRK07232 257 FLGLSA--AGVLTPEMVKSMA-DNPII 280 (752)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEE
Confidence 998887 5567777899998 48888
No 414
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.95 E-value=1.4e+02 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=24.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|++|+|+++.. ....=..+++.|.++|++|.+++...
T Consensus 4 ~~~~~vlItGa------sg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVTGA------ARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEEeCC------CchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44567776542 22355688888999999997766443
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.88 E-value=1.1e+02 Score=28.53 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=22.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+|+++.. ...-..++..|.+.||+|+++...
T Consensus 1 m~I~IiG~-------G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA-------GAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC-------CHHHHHHHHHHHhCCCeEEEEECC
Confidence 45666642 234566788888899999999864
No 416
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=35.61 E-value=1.4e+02 Score=24.53 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=30.6
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCc---EEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT---KVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~ 113 (477)
|..+||+++...++..=....+..-...|.+.|. ++.++...
T Consensus 1 ~~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VP 45 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVP 45 (144)
T ss_dssp -TTEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEES
T ss_pred CCCCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 6778999999988764444666677788888887 67777643
No 417
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.61 E-value=57 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=26.4
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+|.+. +.||.. ....+||..|+++|++|.++-.+
T Consensus 1 ~~i~v~----gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVY----GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEe----cCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 455555 256666 56789999999999999998754
No 418
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=35.45 E-value=96 Score=26.49 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
.-+...+.+.+.+|. ++|++..+++|+|.+--..-++.++++++.
T Consensus 154 ~~d~~~a~~sl~RLa--------~~~~fe~lLvGdGwpi~~~~r~rl~~L~~~ 198 (199)
T PF14597_consen 154 LYDPTEARASLRRLA--------AYPDFEWLLVGDGWPIFRDARQRLRELVAT 198 (199)
T ss_dssp -S-HHHHHHHHHHHH--------T-TT--EEEESBB--B-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh--------ccccccEEeecCCchhhhhHHHHHHHHHhc
Confidence 346677788888876 568999999999976555567777777653
No 419
>PRK09273 hypothetical protein; Provisional
Probab=35.39 E-value=55 Score=28.61 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=30.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|||+++......+--+.....|...|.+.||+|.=+...
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 789888876655444567889999999999999777643
No 420
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.37 E-value=84 Score=25.76 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE
Q 011779 323 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402 (477)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e 402 (477)
|-.+++.+.++++|+ .|+|+....-....-......+.-+. .|.--.-++|-.--|=-|| +.|.|-...
T Consensus 12 PVk~~i~r~A~r~~~--~v~~Van~~~~~~~~~~i~~v~V~~g--~DaaD~~Iv~~a~~gDlVV-------T~Di~LA~~ 80 (150)
T COG1671 12 PVKDEIYRVAERMGL--KVTFVANFPHRVPPSPEIRTVVVDAG--FDAADDWIVNLAEKGDLVV-------TADIPLASL 80 (150)
T ss_pred chHHHHHHHHHHhCC--eEEEEeCCCccCCCCCceeEEEecCC--cchHHHHHHHhCCCCCEEE-------ECchHHHHH
Confidence 467777777777776 36665543111111122333333333 4555555677777777777 555554444
Q ss_pred Eeec-----CCceeeecC
Q 011779 403 IVVN-----GTTGLLHPV 415 (477)
Q Consensus 403 ~v~~-----~~~G~l~~~ 415 (477)
++.. +..|-++++
T Consensus 81 ll~kg~~v~~prGr~y~~ 98 (150)
T COG1671 81 LLDKGAAVLNPRGRLYTE 98 (150)
T ss_pred HHhcCCEEECCCCcccCH
Confidence 4422 345555553
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=35.34 E-value=2.6e+02 Score=23.20 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
||+|.|+.- ...=..+++.|.+.||+|+++..... -...+...|... ........+ ..|+
T Consensus 1 m~~Ig~IGl-------G~mG~~~a~~L~~~g~~v~~~d~~~~---------~~~~~~~~g~~~--~~s~~e~~~--~~dv 60 (163)
T PF03446_consen 1 MMKIGFIGL-------GNMGSAMARNLAKAGYEVTVYDRSPE---------KAEALAEAGAEV--ADSPAEAAE--QADV 60 (163)
T ss_dssp -BEEEEE---------SHHHHHHHHHHHHTTTEEEEEESSHH---------HHHHHHHTTEEE--ESSHHHHHH--HBSE
T ss_pred CCEEEEEch-------HHHHHHHHHHHHhcCCeEEeeccchh---------hhhhhHHhhhhh--hhhhhhHhh--cccc
Confidence 567887752 25667889999999999998863321 123344445333 333344433 3599
Q ss_pred EEEcCcch
Q 011779 154 IVLNTAVA 161 (477)
Q Consensus 154 V~~~~~~~ 161 (477)
|++.-+..
T Consensus 61 vi~~v~~~ 68 (163)
T PF03446_consen 61 VILCVPDD 68 (163)
T ss_dssp EEE-SSSH
T ss_pred eEeecccc
Confidence 98865443
No 422
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=35.28 E-value=79 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=25.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW 109 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v 109 (477)
|+++++-.+ ..|..++.+..+++.|...|++|.+
T Consensus 1 M~i~IiY~S-~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYLS-LSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEEC-CCChHHHHHHHHHHHHhhCCeeEEe
Confidence 466666543 3366678899999999999999873
No 423
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.02 E-value=1.6e+02 Score=27.04 Aligned_cols=88 Identities=13% Similarity=0.008 Sum_probs=48.8
Q ss_pred HHHHHhcCEEEEcCCCCCCc-ccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-----------------CCceee
Q 011779 351 APYLAAIDVLVQNSQAWGEC-FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-----------------GTTGLL 412 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~-~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-----------------~~~G~l 412 (477)
...++.||++|..... .|+ |=-.++++. -+.++| .... |+..+... ..--+.
T Consensus 46 ~~~l~~Adlvv~~G~~-le~~w~~~~~~~~-~~~~~v-------~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~dPH~W 115 (266)
T cd01018 46 MKKLSEADLYFRIGLG-FEEVWLERFRSNN-PKMQVV-------NMSK-GITLIPMADHHHHHHGEHEHHHHGNYDPHIW 115 (266)
T ss_pred HHHHHhCCEEEEcCCc-chHHHHHHHHhhC-CCCeEE-------ECCC-CceeccccccccccccccccccCCCCCCccC
Confidence 4457889999987653 554 544455533 345566 3221 22111100 011233
Q ss_pred ecCCCCCHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
.+|.+ ...++++|.+.+. +|+..+...+|+.++.++
T Consensus 116 ldp~~--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 153 (266)
T cd01018 116 LSPAN--AKIMAENIYEALAELDPQNATYYQANLDALLAE 153 (266)
T ss_pred cCHHH--HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 44444 6677777777776 888777777777776643
No 424
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.98 E-value=75 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+++++|++..... .+.....++++.|.+.|++|.++....
T Consensus 4 l~~k~IllgvTGs---iaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGG---IAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCH---HHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4567777665322 223567899999999999999888554
No 425
>CHL00175 minD septum-site determining protein; Validated
Probab=34.92 E-value=85 Score=28.95 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=28.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|+.+...-+--|-.....+|+.+|++.|++|.++-.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4565555444333444778999999999999998886443
No 426
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=34.83 E-value=2.6e+02 Score=27.26 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE-EEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~ 346 (477)
++.+.+..+ ...++++.+.+..+++. | +.+++++. ....++++..... .+ .+.|.
T Consensus 25 p~~f~VvaL---aa~~n~~~l~~q~~~f~----------p--~~v~i~~~-----~~~~~l~~~l~~~----~~~v~~G~ 80 (385)
T PRK05447 25 PDRFRVVAL---SAGKNVELLAEQAREFR----------P--KYVVVADE-----EAAKELKEALAAA----GIEVLAGE 80 (385)
T ss_pred ccccEEEEE---EcCCCHHHHHHHHHHhC----------C--CEEEEcCH-----HHHHHHHHhhccC----CceEEECh
Confidence 345555433 33678888888777652 4 56677765 4455555533221 23 34453
Q ss_pred cCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 347 TLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 347 ~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+.+.++.+. +|++|..... ..|. -.+++|+..|++|.+
T Consensus 81 -~~~~~l~~~~~vD~Vv~Ai~G-~aGl-~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 81 -EGLCELAALPEADVVVAAIVG-AAGL-LPTLAAIRAGKRIAL 120 (385)
T ss_pred -hHHHHHhcCCCCCEEEEeCcC-cccH-HHHHHHHHCCCcEEE
Confidence 667777664 5888877761 2233 468999999999993
No 427
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=34.72 E-value=3.4e+02 Score=26.99 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------h
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------Q 142 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------~ 142 (477)
++..|+++.... .|=.+.+..||..|.+.|+.|.+++.+.... .....+.......+++++.... .
T Consensus 99 ~~~vi~lvG~~G--vGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~--aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~ 174 (429)
T TIGR01425 99 KQNVIMFVGLQG--SGKTTTCTKLAYYYQRKGFKPCLVCADTFRA--GAFDQLKQNATKARIPFYGSYTESDPVKIASEG 174 (429)
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHHHHHHCCCCEEEEcCcccch--hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHH
Q ss_pred hhHHHhcCCcEEEEcCcc
Q 011779 143 ETINTALKADLIVLNTAV 160 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~ 160 (477)
-...+...+|+|++-++.
T Consensus 175 l~~~~~~~~DvViIDTaG 192 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSG 192 (429)
T ss_pred HHHHHhCCCCEEEEECCC
No 428
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.67 E-value=2.2e+02 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=23.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
++++++ ||....-..+++.|.++|++|.++...
T Consensus 3 k~vlIt-----G~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVT-----GGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred cEEEEe-----CCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 455555 333345678889999999999887744
No 429
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=34.66 E-value=1.4e+02 Score=27.54 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=49.9
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHc-CCCEEeeccccccccCCCceEEeec--------------C--Cceeee
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLLQKCLYQGTAAGGTTEIVVN--------------G--TTGLLH 413 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~~~~~~~~~~~gg~~e~v~~--------------~--~~G~l~ 413 (477)
..-++.||++|..... .|+|-..++++... +.++| .. ..++.-+-.. + .--+..
T Consensus 47 ~~~l~~Adliv~~G~~-~e~w~~k~~~~~~~~~~~~v-------~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wl 117 (282)
T cd01017 47 IARIADADVFVYNGLG-METWAEKVLKSLQNKKLKVV-------EA-SKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWL 117 (282)
T ss_pred HHHHHhCCEEEEcCcc-hHHHHHHHHHhcccCCceEE-------EC-CCCccccccccccccccccccccCCCCCCcccc
Confidence 3458889999977653 67766677776542 33455 21 1122111000 0 112344
Q ss_pred cCCCCCHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 414 PVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 414 ~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
++.+ ...++++|.+.+. ||+......+|+.++..+
T Consensus 118 dp~~--~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~ 154 (282)
T cd01017 118 SPVL--AIQQVENIKDALIKLDPDNKEYYEKNAAAYAKK 154 (282)
T ss_pred CHHH--HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4444 5677777777665 787777777777765543
No 430
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=34.43 E-value=15 Score=37.35 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..+..++++|.++||+|+++++.
T Consensus 14 ~~~~~l~~~L~~rGH~VTvl~~~ 36 (500)
T PF00201_consen 14 IFMRPLAEELAERGHNVTVLTPS 36 (500)
T ss_dssp HHHHHHHHHHHHH-TTSEEEHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEee
Confidence 67889999999999999999953
No 431
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.36 E-value=3.1e+02 Score=23.77 Aligned_cols=80 Identities=23% Similarity=0.205 Sum_probs=46.9
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-------hh-H--
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------ET-I-- 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------~~-~-- 145 (477)
.|+++.+.. .|=...+..||..+..+|..|.+++.+.... .....+....+..|++++..... +. +
T Consensus 3 vi~lvGptG--vGKTTt~aKLAa~~~~~~~~v~lis~D~~R~--ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGPTG--VGKTTTIAKLAARLKLKGKKVALISADTYRI--GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEESTT--SSHHHHHHHHHHHHHHTT--EEEEEESTSST--HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCC--CchHhHHHHHHHHHhhccccceeecCCCCCc--cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 355555432 2444778899999998899999999654432 22223444556678888765422 11 1
Q ss_pred HHhcCCcEEEEcCc
Q 011779 146 NTALKADLIVLNTA 159 (477)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (477)
....++|+|++-++
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 12356888888764
No 432
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.34 E-value=1.1e+02 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=27.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+++++|+++|.... +....+..+-+.+.++|.++.+-...
T Consensus 1 ~~~~~ILl~C~~G~--sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGM--STSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCch--hHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 35678999986532 22356677788888999998877643
No 433
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=34.26 E-value=92 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=29.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+++.++...+..|-.....+||..|++.|.+|.++-.+
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 466666655544566688999999999999999988643
No 434
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.19 E-value=3.3e+02 Score=24.28 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=39.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
.++|+++ ||| .....=++.|.+.|-+|+|+++.-.. .+........++...-..... ....+++
T Consensus 25 ~~~VLVV------GGG-~VA~RK~~~Ll~~gA~VtVVap~i~~-------el~~l~~~~~i~~~~r~~~~~--dl~g~~L 88 (223)
T PRK05562 25 KIKVLII------GGG-KAAFIKGKTFLKKGCYVYILSKKFSK-------EFLDLKKYGNLKLIKGNYDKE--FIKDKHL 88 (223)
T ss_pred CCEEEEE------CCC-HHHHHHHHHHHhCCCEEEEEcCCCCH-------HHHHHHhCCCEEEEeCCCChH--HhCCCcE
Confidence 3456555 344 45566678888899999999966432 122222233444443222222 2246888
Q ss_pred EEEcC
Q 011779 154 IVLNT 158 (477)
Q Consensus 154 V~~~~ 158 (477)
|++-+
T Consensus 89 ViaAT 93 (223)
T PRK05562 89 IVIAT 93 (223)
T ss_pred EEECC
Confidence 88876
No 435
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=34.17 E-value=2.9e+02 Score=23.35 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.++..+++.|- .....+ ...+.-+.++.+.+++ +..+++++.+.-.+..+. .+.++++++..+. +..-+.|.
T Consensus 51 ~Gk~~lv~F~y-T~CpdvCp~~l~~l~~~~~~l~~---~~~~v~~v~ISvDP~~DT--p~~L~~Y~~~~~~-~~~~ltg~ 123 (174)
T PF02630_consen 51 KGKWVLVFFGY-TRCPDVCPTTLANLSQLQKQLGE---EGKDVQFVFISVDPERDT--PEVLKKYAKKFGP-DFIGLTGS 123 (174)
T ss_dssp TTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHH---TTTTEEEEEEESSTTTC---HHHHHHHHHCHTT-TCEEEEEE
T ss_pred CCCeEEEEEEE-cCCCccCHHHHHHHHHHHHHhhh---ccCceEEEEEEeCCCCCC--HHHHHHHHHhcCC-CcceeEeC
Confidence 46777777764 334444 3455666666666665 345799999998765554 4678888887764 34555665
Q ss_pred cCCHHHHHHhcCEEE
Q 011779 347 TLTVAPYLAAIDVLV 361 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v 361 (477)
.+++.++.+...++.
T Consensus 124 ~~~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 124 REEIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHHHHHCTHCE
T ss_pred HHHHHHHHHHHHhhh
Confidence 566666666555443
No 436
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.09 E-value=77 Score=29.83 Aligned_cols=40 Identities=23% Similarity=0.022 Sum_probs=28.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|++++|+++.... .+.....+..+.+.|.+.|++|.+...
T Consensus 1 ~~~kkv~lI~n~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAG-SSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCC-CHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 6778899887642 122335677888889999999988763
No 437
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=33.99 E-value=2.7e+02 Score=23.58 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=36.9
Q ss_pred eEEEEEeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc--------chHHHHHHHHHHHhcCCCCcE
Q 011779 271 LLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA--------QTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 271 ~~il~vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~--------~~~~~~~l~~~~~~~~l~~~v 341 (477)
..-+++||+.| .+|+-.+++-+.+. -|--++++|+.... ..+-..-+++..++.++..++
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~-----------vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~r~ 72 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSK-----------VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDLRV 72 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHh-----------CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCceE
Confidence 45678999999 89997776655432 34566777873211 111223445555555654455
Q ss_pred EEcc
Q 011779 342 HFVN 345 (477)
Q Consensus 342 ~~~g 345 (477)
.+..
T Consensus 73 ~~~~ 76 (172)
T COG1056 73 YLRP 76 (172)
T ss_pred EEEe
Confidence 5544
No 438
>PRK11263 cardiolipin synthase 2; Provisional
Probab=33.96 E-value=2.4e+02 Score=27.94 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=38.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChh--hHHhhhhhhhhhcCcEEEec
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED--EVIYSLEHKMWDRGVQVISA 139 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~~~~~~~~~~g~~v~~~ 139 (477)
..+|.+.++++.|+ ...+..| ..-+++|.+|.++++..++... .....+...+...|++++..
T Consensus 219 ~~~I~I~tpYf~p~--~~l~~aL-~~Aa~RGV~V~ii~~~~~d~~~~~~a~~~~~~~Ll~~Gv~I~~y 283 (411)
T PRK11263 219 RREVIIANAYFFPG--YRLLRAL-RNAARRGVRVRLILQGEPDMPIVRVGARLLYNYLLKGGVQIYEY 283 (411)
T ss_pred ceEEEEEecCcCCC--HHHHHHH-HHHHHCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 46788888888775 2334444 3446689999999976544321 11112334556678887643
No 439
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=33.92 E-value=75 Score=28.47 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|-.....+|+..|+++|+.|.++-.+.
T Consensus 14 GKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 14 GKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 334778899999999999999998654
No 440
>PRK06487 glycerate dehydrogenase; Provisional
Probab=33.92 E-value=3.4e+02 Score=25.71 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=49.6
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--------cCCHHHHHHhcCEEEE--cCCCCCCcc---cHH
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------TLTVAPYLAAIDVLVQ--NSQAWGECF---GRI 374 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--------~~~l~~~~~~aDv~v~--pS~~~~E~~---g~~ 374 (477)
+-++-|+|-| .-..++-+.++.+|. +|..... ..++.++++.||++++ |.. .|+- +-.
T Consensus 148 gktvgIiG~G-----~IG~~vA~~l~~fgm--~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt--~~T~~li~~~ 218 (317)
T PRK06487 148 GKTLGLLGHG-----ELGGAVARLAEAFGM--RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLT--EHTRHLIGAR 218 (317)
T ss_pred CCEEEEECCC-----HHHHHHHHHHhhCCC--EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCC--hHHhcCcCHH
Confidence 4467777777 556666666666654 3443321 1358999999999874 444 5554 445
Q ss_pred HHHHHHcCCCEEeeccccccccCCCc
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGT 400 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~ 400 (477)
.+..|--|.-+| .+.-|++
T Consensus 219 ~~~~mk~ga~lI-------N~aRG~v 237 (317)
T PRK06487 219 ELALMKPGALLI-------NTARGGL 237 (317)
T ss_pred HHhcCCCCeEEE-------ECCCccc
Confidence 788888787777 6666654
No 441
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=33.83 E-value=1.4e+02 Score=27.54 Aligned_cols=66 Identities=8% Similarity=0.139 Sum_probs=44.1
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++++++.+-+. ..+..++.+++++.. ....++.++++.+|+++..+- .....-...+++..|++|+
T Consensus 30 ~~~el~aV~dr------~~~~a~~~a~~~g~~------~~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVR------DPQRHADFIWGLRRP------PPVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECC------CHHHHHHHHHhcCCC------cccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 67787755543 133345556655421 123567777888999998876 5555556788999999999
No 442
>PRK09004 FMN-binding protein MioC; Provisional
Probab=33.74 E-value=80 Score=25.88 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=25.2
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
+|.++.. ...|-++..+..+++.+.+.|++|.++.
T Consensus 3 ~i~I~yg-S~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISG-STLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEE-cCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 4555532 2235566889999999999999998863
No 443
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.56 E-value=2.8e+02 Score=22.96 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=36.7
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHHh-----cCEEEEcCCCCCCcccHHHHHHHHcC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAA-----IDVLVQNSQAWGECFGRITIEAMAFQ 382 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~~-----aDv~v~pS~~~~E~~g~~~lEAma~G 382 (477)
.+|.|+.+ +.+..++.....+++|++-.+...+-. +++.++.+. +|+++.-.- .+ -.+.-.=|-..-
T Consensus 4 ~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG--~~-a~Lpgvva~~t~ 78 (150)
T PF00731_consen 4 AIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAG--MS-AALPGVVASLTT 78 (150)
T ss_dssp EEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEE--SS---HHHHHHHHSS
T ss_pred EEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECC--Cc-ccchhhheeccC
Confidence 34555542 234566666777777776666666532 445555433 467765443 22 123334455567
Q ss_pred CCEEeec
Q 011779 383 LPVLLQK 389 (477)
Q Consensus 383 ~PvI~~~ 389 (477)
+|||..|
T Consensus 79 ~PVIgvP 85 (150)
T PF00731_consen 79 LPVIGVP 85 (150)
T ss_dssp S-EEEEE
T ss_pred CCEEEee
Confidence 8888443
No 444
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.53 E-value=76 Score=29.12 Aligned_cols=23 Identities=17% Similarity=-0.133 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..=..+++.|.++|++|.++...
T Consensus 15 giG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 15 GIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 34567788899999999887644
No 445
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.49 E-value=1.7e+02 Score=23.75 Aligned_cols=42 Identities=21% Similarity=0.060 Sum_probs=27.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|++++|++.+...- +-..=..-++..|...|++|+.+-..-+
T Consensus 1 ~~~~~vl~~~~~gD--~H~lG~~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGAD--CHAVGNKILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCC--hhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 56778877774432 2223345667788899999998875544
No 446
>PRK07308 flavodoxin; Validated
Probab=33.29 E-value=90 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.023 Sum_probs=22.4
Q ss_pred CCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 85 SLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 85 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
..|..+..+..+++.|.+.|++|.+.-.
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 3366678899999999999999887653
No 447
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=33.28 E-value=93 Score=27.82 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|+++.++.. .-.|-...+..|+..|.++|+.|.++-
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456666654 335555778899999999999999996
No 448
>PRK10037 cell division protein; Provisional
Probab=33.22 E-value=80 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=22.0
Q ss_pred Cchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 87 SGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 87 gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||.. ....+|+..|+++|++|.++-.+
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 5555 55789999999999999999644
No 449
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.13 E-value=2.5e+02 Score=26.11 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=44.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc----ch----
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQ---- 142 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~----~~---- 142 (477)
++|||+++.+.. ..-+..|..+.... +++|.++.++.++ ........|++++.+. ..
T Consensus 88 ~~~ri~vl~Sg~-----g~nl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK13011 88 ARPKVLIMVSKF-----DHCLNDLLYRWRIGELPMDIVGVVSNHPD--------LEPLAAWHGIPFHHFPITPDTKPQQE 154 (286)
T ss_pred cCceEEEEEcCC-----cccHHHHHHHHHcCCCCcEEEEEEECCcc--------HHHHHHHhCCCEEEeCCCcCchhhhH
Confidence 457888887542 25577777776644 5788776654442 2223566788775431 11
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..++|+|++-.
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (286)
T PRK13011 155 AQVLDVVEESGAELVVLAR 173 (286)
T ss_pred HHHHHHHHHhCcCEEEEeC
Confidence 2234567899998864
No 450
>PRK03094 hypothetical protein; Provisional
Probab=32.99 E-value=28 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHhCCcEEEEEe
Q 011779 89 GPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 89 ~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.+.-+.++..+|+++||+|.=+.
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecC
Confidence 34457789999999999998664
No 451
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.97 E-value=1.7e+02 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
...++|++... ||.. ....++++.|.+.|++|.++....
T Consensus 68 l~~k~IllgVt----GsIAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 68 LASKRVTLIIG----GGIAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred cCCCEEEEEEc----cHHHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 45677776653 3433 568899999999999999888554
No 452
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=32.87 E-value=1.1e+02 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (477)
++++.++..-+--|-.....+||.+|++ .|++|.++-.+.
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 4455555433334555778899999996 699999987443
No 453
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.82 E-value=2.4e+02 Score=30.81 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
|++++|+++. . ||. =+..||+.|.++|++|++.-..... . ...+...|+.++.-... .. ...+
T Consensus 2 ~~~~~i~viG--~--G~s--G~salA~~L~~~G~~V~~sD~~~~~--~------~~~L~~~gi~~~~g~~~-~~--~~~~ 64 (809)
T PRK14573 2 MKSLFYHFIG--I--GGI--GMSALAHILLDRGYSVSGSDLSEGK--T------VEKLKAKGARFFLGHQE-EH--VPED 64 (809)
T ss_pred CCcceEEEEE--e--cHH--hHHHHHHHHHHCCCeEEEECCCCCh--H------HHHHHHCCCEEeCCCCH-HH--cCCC
Confidence 4445676665 2 222 2455788899999999875432211 1 22345568877543322 11 2368
Q ss_pred cEEEEcCc--chhhHHHHHhhhCC
Q 011779 152 DLIVLNTA--VAGKWLDAVLKEDV 173 (477)
Q Consensus 152 DiV~~~~~--~~~~~~~~~~~~~~ 173 (477)
|+|+.... .....+..+...++
T Consensus 65 d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 65 AVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred CEEEECCCcCCCCHHHHHHHHCCC
Confidence 99887652 22333444444444
No 454
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=32.73 E-value=80 Score=28.67 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=49.1
Q ss_pred HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE-EeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE-IVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e-~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
.-++.||++|..... .|+|--.++++.......+ .....++.. --.++.. +..+|.+ ...++++|.+.
T Consensus 43 ~~l~~Adlvv~~G~~-~e~~l~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~npH-~Wldp~~--~~~~~~~Ia~~ 111 (256)
T PF01297_consen 43 KKLQKADLVVYNGLG-LEPWLEKLLESSQNPKVKV-------IDLSEGIDLDHHGHNPH-VWLDPEN--AKKMAEAIADA 111 (256)
T ss_dssp HHHHHSSEEEES-TT-TSCCHHHHHHTTTTTTTEE-------EETTTTS-GSTTCBEST-GGGSHHH--HHHHHHHHHHH
T ss_pred HHHHhCCEEEEeCCc-cchhhhhhhhcccccccce-------EEeecccccccCCCCCc-hHHHHHH--HHHHHHHHHHH
Confidence 446889999987753 7888555664444444444 333333311 0001112 3444444 66677777766
Q ss_pred Hh--CHHHHHHHHHHHHHHHH
Q 011779 431 AT--HVERRLTMGKRGYERVK 449 (477)
Q Consensus 431 l~--~~~~~~~~~~~a~~~~~ 449 (477)
+. +|+..+...+|+.++..
T Consensus 112 L~~~~P~~~~~y~~N~~~~~~ 132 (256)
T PF01297_consen 112 LSELDPANKDYYEKNAEKYLK 132 (256)
T ss_dssp HHHHTGGGHHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHH
Confidence 65 78877777777776654
No 455
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=32.68 E-value=97 Score=30.01 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=27.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+|+|++. ||....=..+++.|.++||+|+.+...
T Consensus 20 ~~~~IlVt------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 45788765 444467778999999999999998753
No 456
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.51 E-value=87 Score=26.14 Aligned_cols=36 Identities=11% Similarity=-0.076 Sum_probs=25.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|++|.+++.....--....+..|.+.|+++|+ .+++
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~--~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGH--ILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEc
Confidence 46788888764333334678899999999997 4555
No 457
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=32.46 E-value=5.1e+02 Score=25.69 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=40.1
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcc-cHHHHHHHHc---CCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMAF---QLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~-g~~~lEAma~---G~Pv 385 (477)
++++++.. .+..++++++++. .+ .. .+++...+..+|+++..+.. .+++ .-..++.+.. +.|.
T Consensus 208 ~V~v~~r~-------~~ra~~la~~~g~--~~--~~-~~~~~~~l~~aDvVI~aT~s-~~~~i~~~~l~~~~~~~~~~~~ 274 (423)
T PRK00045 208 KITVANRT-------LERAEELAEEFGG--EA--IP-LDELPEALAEADIVISSTGA-PHPIIGKGMVERALKARRHRPL 274 (423)
T ss_pred eEEEEeCC-------HHHHHHHHHHcCC--cE--ee-HHHHHHHhccCCEEEECCCC-CCcEEcHHHHHHHHhhccCCCe
Confidence 55666654 2344556666542 11 11 14566778899999987652 3332 2223444432 4577
Q ss_pred EeeccccccccCCCceEE
Q 011779 386 LLQKCLYQGTAAGGTTEI 403 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~ 403 (477)
+ ..|.+..+++
T Consensus 275 v-------viDla~Prdi 285 (423)
T PRK00045 275 L-------LVDLAVPRDI 285 (423)
T ss_pred E-------EEEeCCCCCC
Confidence 7 6666655554
No 458
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=32.45 E-value=1e+02 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=31.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..|+|++|.-+..|. +..+..+++|.++||+|.-+.+.
T Consensus 15 ~~K~IAvVG~S~~P~---r~sy~V~kyL~~~GY~ViPVNP~ 52 (140)
T COG1832 15 SAKTIAVVGASDKPD---RPSYRVAKYLQQKGYRVIPVNPK 52 (140)
T ss_pred hCceEEEEecCCCCC---ccHHHHHHHHHHCCCEEEeeCcc
Confidence 357899998777665 67888999999999999988764
No 459
>PRK10867 signal recognition particle protein; Provisional
Probab=32.34 E-value=4.6e+02 Score=26.14 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc----
Q 011779 66 SSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---- 140 (477)
Q Consensus 66 ~~~~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---- 140 (477)
..+......+...++....+-.|=...+..||..|.+. |..|.+++.+. ........+.......|++++...
T Consensus 90 ~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~--~R~aa~eQL~~~a~~~gv~v~~~~~~~d 167 (433)
T PRK10867 90 NSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV--YRPAAIEQLKTLGEQIGVPVFPSGDGQD 167 (433)
T ss_pred cceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc--cchHHHHHHHHHHhhcCCeEEecCCCCC
Q ss_pred ------chhhHHHhcCCcEEEEcCcc
Q 011779 141 ------GQETINTALKADLIVLNTAV 160 (477)
Q Consensus 141 ------~~~~~~~~~~~DiV~~~~~~ 160 (477)
......+...+|+|++.++.
T Consensus 168 p~~i~~~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 168 PVDIAKAALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC
No 460
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=32.15 E-value=2.1e+02 Score=26.93 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=54.0
Q ss_pred HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeeccccccccCCCceEEee---cC--CceeeecCCCCCHHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQGTAAGGTTEIVV---NG--TTGLLHPVGKEGITPLAK 425 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~~~~gg~~e~v~---~~--~~G~l~~~~d~~~~~la~ 425 (477)
..++.||+++..... .|+|-..+++...... ++|- +++.=.....-. +| .-....+|.+ ...+++
T Consensus 77 ~~i~~ADliv~nG~~-le~w~~k~~~~~~~~~~~~i~------~s~~i~~~~~~~~~~~g~~dpH~Wldp~n--a~~~v~ 147 (303)
T COG0803 77 AKLRKADLIVYNGLG-LEPWLEKLLESADKKKVLVIE------VSDGIELLPLPGEEEEGVNDPHVWLDPKN--AKIYAE 147 (303)
T ss_pred HHHHhCCEEEEcCCC-hHHHHHHHHHhcccCCceEEE------ccCCccccCCCCccccCCCCCCeecCHHH--HHHHHH
Confidence 347789999988774 7777677777665544 3441 111111111111 11 2334455545 667777
Q ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 426 NIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 426 ~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
.|.+-+. ||+..+...+|+.++.++
T Consensus 148 ~I~~~L~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 148 NIADALVELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 7776666 899888888888887754
No 461
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=32.14 E-value=87 Score=24.44 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=29.2
Q ss_pred EEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 76 LVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
||+|+....+.|... +-..+++-.++..+++|.|+...++
T Consensus 1 kil~i~~~~Pyg~~~~~e~l~~al~~aa~~~eV~vff~~DG 41 (116)
T TIGR03010 1 KLAFVFRQAPHGTASGREGLDALLAASAFDEDIGVFFIDDG 41 (116)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHHHHHhccCCeEEEEechH
Confidence 477888766655422 5567788888888999998886654
No 462
>PLN02208 glycosyltransferase family protein
Probab=31.94 E-value=92 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+|+++- ++.-|--.=+.+||+.|+.+|++|++++..
T Consensus 5 ~hvv~~P--~paqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 5 FHAFMFP--WFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CEEEEec--CccccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3565554 333455567899999999999999999944
No 463
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.94 E-value=1.4e+02 Score=25.01 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=37.9
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh--hHH-HhcCCcEEEEcC
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--TIN-TALKADLIVLNT 158 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~-~~~~~DiV~~~~ 158 (477)
||....=..+++.|.++||+|++++..... ... ..+++++...... .+. .....|.|+...
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~--------~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSK--------AED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGG--------HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchh--------ccc---ccccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 444467788999999999999999966432 111 4566666554322 112 123677776654
No 464
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=31.84 E-value=53 Score=31.58 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=41.3
Q ss_pred HHHHHHhcCEEEEcCCCCCCcccH-HHHHHHHcCCC-EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHH
Q 011779 350 VAPYLAAIDVLVQNSQAWGECFGR-ITIEAMAFQLP-VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 427 (477)
Q Consensus 350 l~~~~~~aDv~v~pS~~~~E~~g~-~~lEAma~G~P-vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i 427 (477)
...+++....++..-.+..+++=. ++.+|+..|+. |+. ++....+.+++-. +.++.-.+-.++++||+.|
T Consensus 221 ~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~------G~~~~~~~~~~P~--~SfI~~~df~s~~~La~yl 292 (349)
T PF00852_consen 221 KLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYW------GPPRPNYEEFAPP--NSFIHVDDFKSPKELADYL 292 (349)
T ss_dssp HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEE------S---TTHHHHS-G--GGSEEGGGSSSHHHHHHHH
T ss_pred ccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEE------CCEecccccCCCC--CCccchhcCCCHHHHHHHH
Confidence 445555555444322200222211 47899999975 441 2123344555533 3343322212399999999
Q ss_pred HHHHhCHHHHHH
Q 011779 428 VKLATHVERRLT 439 (477)
Q Consensus 428 ~~ll~~~~~~~~ 439 (477)
..+.+|++++.+
T Consensus 293 ~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 293 KYLDKNDELYNK 304 (349)
T ss_dssp HHHHT-HHHHH-
T ss_pred HHHhcCHHHHhh
Confidence 999988886654
No 465
>PRK01355 azoreductase; Reviewed
Probab=31.80 E-value=1.1e+02 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=28.2
Q ss_pred ccEEEEEeccCC--CCchh-hHHHHHHHHHHhC--CcEEEEEecC
Q 011779 74 SKLVLLVSHELS--LSGGP-LLLMELAFLLRGV--GTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~--~gG~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (477)
||||+++..+.. .+|.. ..+..+++.+.+. |++|.++...
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 468888887665 34444 5667788888874 5899888744
No 466
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=31.79 E-value=2.3e+02 Score=25.41 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=38.9
Q ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHH
Q 011779 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPY 353 (477)
Q Consensus 275 ~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~ 353 (477)
++--++|.|-... ++++.+.+ .....+++|+.. .+ .-.+...+.+++ .++| -|.|.|..+.+
T Consensus 10 h~~liDPdK~~~~--~~~~~~~~---------~gtDai~VGGS~-~~-~~~d~vv~~ik~~~~lP-vilfPg~~~~v--- 72 (230)
T PF01884_consen 10 HATLIDPDKPNPE--EALEAACE---------SGTDAIIVGGSD-TG-VTLDNVVALIKRVTDLP-VILFPGSPSQV--- 72 (230)
T ss_dssp EEEEE-TTSS-HH--HHHHHHHC---------TT-SEEEEE-ST-HC-HHHHHHHHHHHHHSSS--EEEETSTCCG----
T ss_pred eEEEECCCCCCcH--HHHHHHHh---------cCCCEEEECCCC-Cc-cchHHHHHHHHhcCCCC-EEEeCCChhhc---
Confidence 4456788775432 33333322 345567788653 12 223344444444 5554 67888776554
Q ss_pred HHhcCEEEEcCCC
Q 011779 354 LAAIDVLVQNSQA 366 (477)
Q Consensus 354 ~~~aDv~v~pS~~ 366 (477)
-..+|.+++||.-
T Consensus 73 s~~aDail~~svl 85 (230)
T PF01884_consen 73 SPGADAILFPSVL 85 (230)
T ss_dssp -TTSSEEEEEEET
T ss_pred CcCCCEEEEEEEe
Confidence 3569999999863
No 467
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=31.52 E-value=96 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
....++.+.|.+.|++|.++.+..
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChH
Confidence 556799999999999999888543
No 468
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=31.45 E-value=61 Score=30.60 Aligned_cols=40 Identities=8% Similarity=-0.121 Sum_probs=28.3
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||+|+......=... -....|..+.+++||+|.++....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 5889988642221111 356788999999999999998553
No 469
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=31.19 E-value=89 Score=29.48 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=27.9
Q ss_pred eccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 81 SHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 81 ~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
......||.. -.+..|++.|.++|+.|.|++..++.
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 3445556666 56889999999999999999966554
No 470
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=31.13 E-value=3.3e+02 Score=25.58 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=45.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++.. . .+.+..++..|...|.+|.++++..-....... .......|.++.......... ...|
T Consensus 151 ~gl~i~~vGd---~---~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~---~~~~~~~g~~~~~~~d~~~a~--~~aD 219 (304)
T PRK00779 151 KGLKVAWVGD---G---NNVANSLLLAAALLGFDLRVATPKGYEPDPEIV---EKIAKETGASIEVTHDPKEAV--KGAD 219 (304)
T ss_pred CCcEEEEEeC---C---CccHHHHHHHHHHcCCEEEEECCcccCCCHHHH---HHHHHHcCCeEEEEcCHHHHh--CCCC
Confidence 4468988865 1 257889999999999999999975433222111 111233465554333333332 4788
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|++.
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 88885
No 471
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.01 E-value=3e+02 Score=24.22 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--hhHH-HhcCCcEEEEcCc
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETIN-TALKADLIVLNTA 159 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~-~~~~~DiV~~~~~ 159 (477)
+....=..+++.|.+.|++|.+++..... .....+...|+.++..... ..+. .....|.|++..+
T Consensus 6 atG~~G~~v~~~L~~~~~~V~~l~R~~~~-------~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 6 ATGNQGRSVVRALLSAGFSVRALVRDPSS-------DRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp TTSHHHHHHHHHHHHTTGCEEEEESSSHH-------HHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CccHHHHHHHHHHHhCCCCcEEEEeccch-------hhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 33466677888888899999999976521 2244456678888755443 2333 2357999988775
No 472
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.98 E-value=2.3e+02 Score=21.58 Aligned_cols=62 Identities=26% Similarity=0.240 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh-hHH---HhcCCcEEEEcC
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-TIN---TALKADLIVLNT 158 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~---~~~~~DiV~~~~ 158 (477)
|..+....+++.|.+.|.+|.++..... ........|+.++.-.... ... ...+.|.|++.+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 4457899999999998779999985532 2344455677776543331 222 235788887765
No 473
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.91 E-value=98 Score=23.71 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=25.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+||+++|.... +.+..+..+-+.+.++|.++.+-...
T Consensus 2 kkILlvCg~G~--STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGM--SSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCch--HHHHHHHHHHHHHHHCCCceEEEEec
Confidence 67998885432 33355667777778899998876533
No 474
>PRK05246 glutathione synthetase; Provisional
Probab=30.86 E-value=63 Score=30.54 Aligned_cols=41 Identities=5% Similarity=-0.054 Sum_probs=29.2
Q ss_pred ccEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.|+|+|+...... .-.......|+++-+++||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 3789999865322 2222445679999999999999999653
No 475
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.83 E-value=1.4e+02 Score=29.99 Aligned_cols=38 Identities=18% Similarity=0.029 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
.+|++++...+.|| --.-+|+.|..+|++|.|+.....
T Consensus 60 ~~VlVlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~~~~~ 97 (462)
T PLN03049 60 RRVLALCGPGNNGG---DGLVAARHLHHFGYKPSICYPKRT 97 (462)
T ss_pred CEEEEEECCCCCHH---HHHHHHHHHHHCCCceEEEEECCC
Confidence 46999998777766 344567889999999999986543
No 476
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=4.7e+02 Score=25.17 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=50.3
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC-------ChhhHHhhhhhhhhhcCcEEEeccchhh
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-------EEDEVIYSLEHKMWDRGVQVISAKGQET 144 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~-------~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 144 (477)
|++|||+...+ ||.... --|..|.++||||.=++..... ................|++...+.....
T Consensus 1 ~~~~kV~v~mS----GGVDSS--VaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~ 74 (356)
T COG0482 1 MKKKKVLVGMS----GGVDSS--VAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE 74 (356)
T ss_pred CCCcEEEEEcc----CCHHHH--HHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHH
Confidence 45677766552 554332 2345577899999877732211 1112222334455667888877766554
Q ss_pred HHH--------------hcCCcEEEEcCcchhhHHHHHhh
Q 011779 145 INT--------------ALKADLIVLNTAVAGKWLDAVLK 170 (477)
Q Consensus 145 ~~~--------------~~~~DiV~~~~~~~~~~~~~~~~ 170 (477)
++. ..+||+.--+......++..+..
T Consensus 75 y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~ 114 (356)
T COG0482 75 FWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKE 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHH
Confidence 442 25677654444444444444444
No 477
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=30.79 E-value=5.3e+02 Score=25.43 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccc-------cCC-----H-------------
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK-------TLT-----V------------- 350 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~-------~~~-----l------------- 350 (477)
+.++-.+++..+.++++.|.| .-.-.+-+++...|.. .||..+.. .++ .
T Consensus 188 nalk~~gk~l~d~kiv~~GAG-----AAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~ 262 (432)
T COG0281 188 NALKLTGKKLKDQKIVINGAG-----AAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERT 262 (432)
T ss_pred HHHHHhCCCccceEEEEeCCc-----HHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcccc
Confidence 333333336678999999998 4555566666666653 46655542 122 1
Q ss_pred -HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 351 -APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 351 -~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
...+..+|+|+-.|. .--|---+++.|+.. |+|
T Consensus 263 ~~~~~~~adv~iG~S~--~G~~t~e~V~~Ma~~-PiI 296 (432)
T COG0281 263 LDLALAGADVLIGVSG--VGAFTEEMVKEMAKH-PII 296 (432)
T ss_pred ccccccCCCEEEEcCC--CCCcCHHHHHHhccC-CEE
Confidence 112345899999987 544556689999888 877
No 478
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.77 E-value=33 Score=27.48 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=6.3
Q ss_pred hHHHHHHHHHH
Q 011779 16 RWILALLIMLS 26 (477)
Q Consensus 16 ~~~~~~~~~~~ 26 (477)
||.+++++++.
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 57766664443
No 479
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=30.73 E-value=1.9e+02 Score=27.63 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=34.6
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCccc---HHHHHHHHcCCCEEeeccccccccCCCceE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFG---RITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g---~~~lEAma~G~PvI~~~~~~~~~~~gg~~e 402 (477)
.++.++.+.+|++++......++-+ -..+++|--|.-+| .+.-|++.+
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-------N~aRG~iid 259 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-------NTARGAIID 259 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-------ecccccccc
Confidence 5788899999998855432244444 45899999999999 777776543
No 480
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=30.72 E-value=3.9e+02 Score=23.79 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=23.5
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.+.+..+|++|..|. .--|+-..++.|+ ..|+|
T Consensus 90 ~l~~~l~~~dvlIgaT~--~G~~~~~~l~~m~-~~~iv 124 (226)
T cd05311 90 TLKEALKGADVFIGVSR--PGVVKKEMIKKMA-KDPIV 124 (226)
T ss_pred CHHHHHhcCCEEEeCCC--CCCCCHHHHHhhC-CCCEE
Confidence 46567788999998875 3335556677776 45665
No 481
>PRK12743 oxidoreductase; Provisional
Probab=30.70 E-value=2.3e+02 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
-.=..+++.|.+.|++|.++...
T Consensus 13 giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 13 GIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678899999999999877643
No 482
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.63 E-value=3.2e+02 Score=25.31 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
+++||+++.+.. ..-+..+..+..... .+|.++.++.+. ........|++++.....
T Consensus 83 ~~~ki~vl~Sg~-----g~nl~~l~~~~~~g~l~~~i~~visn~~~--------~~~~A~~~gIp~~~~~~~~~~~~~~e 149 (280)
T TIGR00655 83 KLKRVAILVSKE-----DHCLGDLLWRWYSGELDAEIALVISNHED--------LRSLVERFGIPFHYIPATKDNRVEHE 149 (280)
T ss_pred CCcEEEEEEcCC-----ChhHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEcCCCCcchhhhH
Confidence 457888877433 356778888876543 577666655543 222355678887654331
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..++|+|++..
T Consensus 150 ~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred HHHHHHHHHhCCCEEEEeC
Confidence 1334567999999864
No 483
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=30.52 E-value=98 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=25.8
Q ss_pred cEEEEEeccCCCCc-hhhHHHHHHHHHHh-CCcEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSG-GPLLLMELAFLLRG-VGTKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG-~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 115 (477)
|||++... || +.....++++.|.+ .|++|.++.....
T Consensus 2 k~IllgVT----Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGIS----GASGAIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEE----CHHHHHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 45655442 22 23668899999999 5999999986543
No 484
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=30.45 E-value=83 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=28.7
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+++.|.+.-|+.+.++..|++++.++|++|+|+-..
T Consensus 77 ~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 77 LVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred eEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4455566655555689999999999999999999743
No 485
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.43 E-value=1.2e+02 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|.++||+++|...- |....+..+-....+.|.++.|-.
T Consensus 1 m~~kkIllvC~~G~--sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAGM--STSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCCc--cHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34578999995432 333445477777788998888755
No 486
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=30.40 E-value=1.5e+02 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=27.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
++|.++...-.-.|-......|+.+|+++|..|.++-.+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456666644332344467889999999999999888654
No 487
>PRK13236 nitrogenase reductase; Reviewed
Probab=30.06 E-value=76 Score=29.68 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+++-+ +..||.. ....+||.+|+++|++|.++-.+.
T Consensus 6 ~~~~~~---~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 6 IRQIAF---YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred ceEEEE---ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 344444 3367766 557899999999999999997443
No 488
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=30.05 E-value=72 Score=29.32 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=26.3
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|.|.+. ..||.. ....+|+.+|+++|++|.++-.+
T Consensus 2 ~~iav~----gKGGVGKTT~a~nLA~~La~~G~rVllvD~D 38 (273)
T PRK13232 2 RQIAIY----GKGGIGKSTTTQNLTAALSTMGNKILLVGCD 38 (273)
T ss_pred CEEEEE----CCCCCcHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 445554 256666 56889999999999999999644
No 489
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=30.04 E-value=3.8e+02 Score=25.13 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=50.5
Q ss_pred HHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCC
Q 011779 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339 (477)
Q Consensus 260 ~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~ 339 (477)
+++.+|- -+...|.++|-.....=...++.+++.+ ++.+.+++...-. ...++.+.+++.|.
T Consensus 141 i~e~~g~-l~g~~va~vGD~~~~~v~~Sl~~~~a~~------------g~~v~~~~P~~~~---~~~~~~~~~~~~G~-- 202 (301)
T TIGR00670 141 IYEEFGR-LDGLKIALVGDLKYGRTVHSLAEALTRF------------GVEVYLISPEELR---MPKEILEELKAKGI-- 202 (301)
T ss_pred HHHHhCC-CCCCEEEEEccCCCCcHHHHHHHHHHHc------------CCEEEEECCcccc---CCHHHHHHHHHcCC--
Confidence 3444552 3557889999653333355566666543 5788999864211 11334445554432
Q ss_pred cEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 340 RVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
.|.+ .+++.+.++.||++...+.
T Consensus 203 ~v~~---~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 203 KVRE---TESLEEVIDEADVLYVTRI 225 (301)
T ss_pred EEEE---ECCHHHHhCCCCEEEECCc
Confidence 3332 3788999999998877653
No 490
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=30.02 E-value=76 Score=25.47 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=28.3
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCC----------------cEEEccc--cCCHHHHHHhcCEEEEcC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQD----------------RVHFVNK--TLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~----------------~v~~~g~--~~~l~~~~~~aDv~v~pS 364 (477)
-++++|.|.... ...+++++++++++++- .+-+.|. .....++++.||+++.--
T Consensus 14 P~il~G~g~~~~-~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG 85 (137)
T PF00205_consen 14 PVILAGRGARRS-GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIG 85 (137)
T ss_dssp EEEEE-HHHHHT-TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEES
T ss_pred EEEEEcCCcChh-hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEEC
Confidence 355666542111 13456666666665531 2222332 244668889999988543
No 491
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=30.01 E-value=90 Score=28.87 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEc
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLN 157 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~ 157 (477)
..-..|.+.|. .+++|..++...- .+........+.++.+||+|+-.
T Consensus 11 qLG~~L~~~l~-~~~~v~a~~~~~~-------------------Ditd~~~v~~~i~~~~PDvVIn~ 57 (281)
T COG1091 11 QLGTELRRALP-GEFEVIATDRAEL-------------------DITDPDAVLEVIRETRPDVVINA 57 (281)
T ss_pred hHHHHHHHHhC-CCceEEeccCccc-------------------cccChHHHHHHHHhhCCCEEEEC
Confidence 66778888887 6688887764431 12222224566677899998754
No 492
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.92 E-value=2.6e+02 Score=24.80 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv 359 (477)
.+++..++.|.+.- ++ +.+..= .. +...+..+++++.|..--+.+.+.. +.+..++...|+
T Consensus 71 ~~p~~~i~~fa~ag----------ad~It~H~E-~~-----~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~ 134 (220)
T COG0036 71 ENPDRYIEAFAKAG----------ADIITFHAE-AT-----EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL 134 (220)
T ss_pred CCHHHHHHHHHHhC----------CCEEEEEec-cC-----cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE
Confidence 56788888888751 22 233332 22 4567788899999987777777753 778899999999
Q ss_pred EEEcCCCCCCccc
Q 011779 360 LVQNSQAWGECFG 372 (477)
Q Consensus 360 ~v~pS~~~~E~~g 372 (477)
+++-|. .-|||
T Consensus 135 VllMsV--nPGfg 145 (220)
T COG0036 135 VLLMSV--NPGFG 145 (220)
T ss_pred EEEEeE--CCCCc
Confidence 988887 77777
No 493
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=29.87 E-value=5.8e+02 Score=25.56 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcC--cchhhHHHHH
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT--AVAGKWLDAV 168 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~--~~~~~~~~~~ 168 (477)
.-+.-+|+-|.++||+|.=--.. .+...+.+...|+.++.-..... ...+|.|++.+ .....-+..+
T Consensus 18 ~GMsglA~iL~~~G~~VsGSD~~--------~~~~t~~L~~~G~~i~~gh~~~n---i~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 18 IGMSGLAEILLNLGYKVSGSDLA--------ESPMTQRLEALGIEIFIGHDAEN---ILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred ccHHHHHHHHHhCCCceECcccc--------ccHHHHHHHHCCCeEeCCCCHHH---cCCCceEEEecccCCCCHHHHHH
Confidence 45788999999999998633211 11356778888999875544332 23456565554 2333445566
Q ss_pred hhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEe---cCCchhhhh
Q 011779 169 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH---LGNSKELME 245 (477)
Q Consensus 169 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~---ngvd~~~~~ 245 (477)
+..++|.+ +. ..+. ....+....+.-.=+.-.++...+...+....|.++ ..+|- ++...+...
T Consensus 87 ~e~~ipi~--------~r--~e~L-aelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldP--tf~iGG~~~~~g~na~~ 153 (459)
T COG0773 87 LERGIPVI--------SR--AEML-AELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDP--TFLIGGILKNFGTNARL 153 (459)
T ss_pred HHcCCCeE--------cH--HHHH-HHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCC--EEEECcccccCCccccc
Confidence 66666532 10 0111 111111111111112334455555555655666554 44544 222221110
Q ss_pred hhhhhHHHHHHHHHHHHh-hCCCCCCeEEEEEeeccc-----CCCHHHHHHHHHHHHHHHHhhccCcCce-EEEEEecC
Q 011779 246 VAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSV-HAVIIGSD 317 (477)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~-~~~~~~~~~il~vGrl~~-----~Kg~~~ll~a~~~l~~~~~~~~~~~~~~-~l~ivG~g 317 (477)
-..+... .+-.+...+ +... +.+..+-+++. .++++.+.++|.++.. ..|.. .++++++.
T Consensus 154 g~~~~fV--~EADEsD~sFl~~~---P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~-------~vp~~G~~v~~~dd 220 (459)
T COG0773 154 GSGDYFV--AEADESDSSFLHYN---PRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVR-------NVPFYGRAVVCGDD 220 (459)
T ss_pred CCCceEE--EEecccccccccCC---CCEEEEeCCCcchhhhhCCHHHHHHHHHHHHH-------hCCccceEEEECCC
Confidence 0000000 000011111 1222 23445566655 6799999999999987 34443 46777776
No 494
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.82 E-value=2.8e+02 Score=25.69 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=49.3
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe----e--------------cC-----
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV----V--------------NG----- 407 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v----~--------------~~----- 407 (477)
...++.||++|..... .|+|--.+++... +.++|. ++..-+..... . ++
T Consensus 47 ~~~l~~Adliv~~G~~-le~~~~~~~~~~~-~~~~i~------~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 118 (286)
T cd01019 47 ARKLQEADLVVWIGPD-LEAFLDKVLQGRK-KGKVLT------LAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGG 118 (286)
T ss_pred HHHHHhCCEEEEeCCC-chHHHHHHHHhcC-cCceEe------cccCCcccccccccccccccccccccccccCCCCCCC
Confidence 3457789999988753 6777667776543 355651 11111110000 0 00
Q ss_pred -CceeeecCCCCCHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 408 -TTGLLHPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 408 -~~G~l~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
+--+..+|.+ ...++++|.+-+. +|+..+...+|+.++..+
T Consensus 119 ~dPHiWldp~n--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 162 (286)
T cd01019 119 LDPHLWLSPEN--AAEVAQAVAEKLSALDPDNAATYAANLEAFNAR 162 (286)
T ss_pred CCCccCCCHHH--HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH
Confidence 0112333333 5667777766665 888877777777776644
No 495
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=29.80 E-value=79 Score=31.98 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+|++..+ ..|--..+.++++.|+++||+|++++..
T Consensus 7 ~~il~~~p---~~sH~~~~~~la~~L~~~gh~vt~~~~~ 42 (496)
T KOG1192|consen 7 HNILVPFP---GQSHLNPMLQLAKRLAERGHNVTVVTPS 42 (496)
T ss_pred eeEEEECC---cccHHHHHHHHHHHHHHcCCceEEEEee
Confidence 45666665 2233378999999999999999999944
No 496
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=29.74 E-value=3.5e+02 Score=27.09 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=49.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
+|||+++. +..+| ...++.|.++|++|++.-........ ........++.+..-.... .....+|+
T Consensus 7 ~~kv~V~G--LG~sG-----~a~a~~L~~~G~~v~v~D~~~~~~~~-----~~~~~~~~~i~~~~g~~~~--~~~~~~d~ 72 (448)
T COG0771 7 GKKVLVLG--LGKSG-----LAAARFLLKLGAEVTVSDDRPAPEGL-----AAQPLLLEGIEVELGSHDD--EDLAEFDL 72 (448)
T ss_pred CCEEEEEe--ccccc-----HHHHHHHHHCCCeEEEEcCCCCccch-----hhhhhhccCceeecCccch--hccccCCE
Confidence 67888887 33233 67889999999999998744332111 0112223455554333222 33457899
Q ss_pred EEEcC--cchhhHHHHHhhhCCC
Q 011779 154 IVLNT--AVAGKWLDAVLKEDVP 174 (477)
Q Consensus 154 V~~~~--~~~~~~~~~~~~~~~~ 174 (477)
|+.+- +....++..+...+++
T Consensus 73 vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 73 VVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred EEECCCCCCCCHHHHHHHHcCCc
Confidence 98875 3333344555555443
No 497
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=29.50 E-value=2e+02 Score=28.54 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=38.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
++||||++.. | -+-..|+..|.+.++-..+++.. ++.... .. ......+..........+.+..++
T Consensus 3 ~~~kvLviG~-----g--~rehal~~~~~~~~~~~~~~~~pgn~g~~~-----~~-~~~~~~~~~~d~~~l~~~a~~~~i 69 (426)
T PRK13789 3 VKLKVLLIGS-----G--GRESAIAFALRKSNLLSELKVFPGNGGFPD-----DE-LLPADSFSILDKSSVQSFLKSNPF 69 (426)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHHHhCCCCCEEEEECCchHHhc-----cc-cccccCcCcCCHHHHHHHHHHcCC
Confidence 3589999862 3 25677888888888655555532 221000 00 000011222222333455667789
Q ss_pred cEEEEcC
Q 011779 152 DLIVLNT 158 (477)
Q Consensus 152 DiV~~~~ 158 (477)
|+|+...
T Consensus 70 D~Vv~g~ 76 (426)
T PRK13789 70 DLIVVGP 76 (426)
T ss_pred CEEEECC
Confidence 9999854
No 498
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.46 E-value=6.3e+02 Score=25.83 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=49.4
Q ss_pred eEEEEEecCCC--cchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH--HcC
Q 011779 309 VHAVIIGSDMN--AQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQ 382 (477)
Q Consensus 309 ~~l~ivG~g~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm--a~G 382 (477)
-.+.|+|.-.. ....+..+++++.+.+|+.-++.|.+. .+++.. +..|++-|.++. | +|..+.+.| -+|
T Consensus 159 ~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~---~-~g~~~A~~Le~~fG 233 (511)
T TIGR01278 159 PSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYR---E-IGLMAAEYLKEKFG 233 (511)
T ss_pred CcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEech---H-HHHHHHHHHHHHhC
Confidence 35677776421 122467889999999999888887764 255544 466777776653 2 466677777 679
Q ss_pred CCEE
Q 011779 383 LPVL 386 (477)
Q Consensus 383 ~PvI 386 (477)
+|.+
T Consensus 234 iP~i 237 (511)
T TIGR01278 234 QPYI 237 (511)
T ss_pred CCcc
Confidence 9988
No 499
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=29.42 E-value=2.4e+02 Score=25.08 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
-.=..+++.|.++|++|.+....
T Consensus 13 giG~~la~~l~~~g~~v~~~~~~ 35 (248)
T PRK06947 13 GIGRATAVLAAARGWSVGINYAR 35 (248)
T ss_pred cHHHHHHHHHHHCCCEEEEEeCC
Confidence 34567888899999998776533
No 500
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.33 E-value=85 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=27.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||++-+.. .+..++++.|.+.|+++.++...
T Consensus 2 ~~iliid~~d------sf~~~i~~~l~~~g~~~~v~~~~ 34 (190)
T PRK06895 2 TKLLIINNHD------SFTFNLVDLIRKLGVPMQVVNVE 34 (190)
T ss_pred cEEEEEeCCC------chHHHHHHHHHHcCCcEEEEECC
Confidence 7899998765 46677999999999999998754
Done!