Query 011779
Match_columns 477
No_of_seqs 364 out of 1651
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fro_A GLGA glycogen synthase; 100.0 4.5E-46 1.5E-50 370.2 30.2 368 73-474 1-436 (439)
2 3c48_A Predicted glycosyltrans 100.0 5.1E-46 1.7E-50 369.8 30.6 363 69-474 15-431 (438)
3 3okp_A GDP-mannose-dependent a 100.0 9.3E-46 3.2E-50 362.6 28.6 355 71-473 1-384 (394)
4 2r60_A Glycosyl transferase, g 100.0 4.3E-46 1.5E-50 376.4 23.9 370 74-473 7-464 (499)
5 2x6q_A Trehalose-synthase TRET 100.0 4.8E-45 1.6E-49 360.3 29.4 358 71-469 37-415 (416)
6 2jjm_A Glycosyl transferase, g 100.0 1.8E-44 6.3E-49 353.5 31.4 341 86-473 26-390 (394)
7 1rzu_A Glycogen synthase 1; gl 100.0 1E-43 3.4E-48 357.9 27.9 370 75-474 1-481 (485)
8 3oy2_A Glycosyltransferase B73 100.0 6E-44 2E-48 352.1 25.7 355 75-472 1-394 (413)
9 2qzs_A Glycogen synthase; glyc 100.0 3.1E-43 1.1E-47 354.4 30.5 366 75-474 1-482 (485)
10 2iw1_A Lipopolysaccharide core 100.0 1E-43 3.6E-48 345.6 19.8 348 75-470 1-373 (374)
11 3vue_A GBSS-I, granule-bound s 100.0 1.5E-42 5E-47 349.4 22.8 368 73-468 8-511 (536)
12 2gek_A Phosphatidylinositol ma 100.0 1.9E-41 6.5E-46 333.4 25.1 352 72-473 18-388 (406)
13 3s28_A Sucrose synthase 1; gly 100.0 1.1E-41 3.8E-46 353.4 22.7 374 73-468 277-769 (816)
14 2iuy_A Avigt4, glycosyltransfe 100.0 3.7E-41 1.3E-45 323.6 21.9 310 72-472 1-339 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 2.5E-38 8.4E-43 309.7 17.3 339 72-470 44-411 (413)
16 2vsy_A XCC0866; transferase, g 100.0 3E-35 1E-39 301.9 29.0 336 71-474 202-565 (568)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.7E-33 6E-38 272.5 27.2 320 75-472 7-361 (364)
18 2hy7_A Glucuronosyltransferase 100.0 1.8E-32 6E-37 268.4 15.5 314 72-469 12-380 (406)
19 1vgv_A UDP-N-acetylglucosamine 100.0 7.6E-32 2.6E-36 262.9 19.3 347 75-472 1-380 (384)
20 3beo_A UDP-N-acetylglucosamine 100.0 6.3E-32 2.2E-36 262.6 18.4 337 71-466 5-374 (375)
21 1uqt_A Alpha, alpha-trehalose- 100.0 2E-30 7E-35 256.6 28.0 218 229-468 218-454 (482)
22 3nb0_A Glycogen [starch] synth 100.0 4.2E-30 1.4E-34 254.7 24.7 305 149-472 180-637 (725)
23 2bfw_A GLGA glycogen synthase; 100.0 1.1E-30 3.7E-35 230.6 17.7 190 235-453 2-200 (200)
24 2xci_A KDO-transferase, 3-deox 100.0 9.2E-29 3.1E-33 239.1 18.4 309 75-454 41-366 (374)
25 3qhp_A Type 1 capsular polysac 100.0 8.5E-29 2.9E-33 211.5 15.0 161 270-460 2-166 (166)
26 3t5t_A Putative glycosyltransf 100.0 1.7E-27 5.9E-32 232.5 23.4 286 150-469 149-474 (496)
27 1v4v_A UDP-N-acetylglucosamine 100.0 8.6E-28 2.9E-32 233.5 17.6 330 74-470 5-366 (376)
28 2f9f_A First mannosyl transfer 99.9 1E-26 3.5E-31 200.6 9.1 153 264-444 17-174 (177)
29 3dzc_A UDP-N-acetylglucosamine 99.9 6.3E-22 2.1E-26 192.4 22.3 337 72-465 23-394 (396)
30 3otg_A CALG1; calicheamicin, T 99.9 1.1E-21 3.7E-26 192.8 23.4 165 268-467 241-409 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.9 1.9E-21 6.4E-26 187.2 24.0 327 73-467 1-357 (365)
32 3ot5_A UDP-N-acetylglucosamine 99.9 5.7E-21 1.9E-25 185.9 21.3 337 71-471 24-394 (403)
33 4fzr_A SSFS6; structural genom 99.9 2.5E-21 8.7E-26 189.3 13.4 162 268-463 226-397 (398)
34 2iyf_A OLED, oleandomycin glyc 99.8 5.5E-20 1.9E-24 181.7 20.9 167 268-469 231-402 (430)
35 3rhz_A GTF3, nucleotide sugar 99.8 4.1E-20 1.4E-24 174.4 16.1 288 87-461 25-329 (339)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 3.6E-20 1.2E-24 180.6 15.6 169 268-466 217-388 (391)
37 3oti_A CALG3; calicheamicin, T 99.8 1E-18 3.5E-23 170.7 21.4 163 268-465 231-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.8 1.1E-18 3.7E-23 170.8 21.4 169 268-467 230-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.8 2.4E-17 8.3E-22 161.9 19.9 168 268-467 246-414 (415)
40 2p6p_A Glycosyl transferase; X 99.7 4E-16 1.4E-20 151.6 22.4 159 268-465 209-378 (384)
41 3q3e_A HMW1C-like glycosyltran 99.6 2E-14 6.9E-19 142.5 22.9 183 261-471 430-626 (631)
42 4hwg_A UDP-N-acetylglucosamine 99.6 4.5E-16 1.5E-20 150.0 10.7 333 73-465 8-374 (385)
43 2yjn_A ERYCIII, glycosyltransf 99.6 3.5E-15 1.2E-19 147.6 16.4 161 268-466 266-435 (441)
44 2iya_A OLEI, oleandomycin glyc 99.5 4.7E-13 1.6E-17 131.6 22.4 162 268-465 254-420 (424)
45 3h4t_A Glycosyltransferase GTF 99.5 1.1E-12 3.6E-17 128.1 18.4 157 268-465 220-381 (404)
46 4amg_A Snogd; transferase, pol 99.5 9.4E-13 3.2E-17 128.4 17.1 162 268-464 236-398 (400)
47 1iir_A Glycosyltransferase GTF 99.4 7.6E-12 2.6E-16 122.5 21.3 157 269-470 238-400 (415)
48 1l5w_A Maltodextrin phosphoryl 99.4 1E-11 3.5E-16 125.8 19.0 248 208-470 419-732 (796)
49 4gyw_A UDP-N-acetylglucosamine 99.4 6.2E-10 2.1E-14 115.7 29.6 190 261-472 514-709 (723)
50 1rrv_A Glycosyltransferase GTF 99.3 3.1E-11 1.1E-15 118.2 17.3 138 269-446 237-382 (416)
51 2o6l_A UDP-glucuronosyltransfe 99.3 5.7E-12 1.9E-16 107.1 9.2 133 268-440 20-161 (170)
52 2c4m_A Glycogen phosphorylase; 99.3 8.3E-11 2.8E-15 119.2 16.6 251 208-470 408-721 (796)
53 2gj4_A Glycogen phosphorylase, 99.2 3.2E-10 1.1E-14 115.4 18.0 248 207-470 442-756 (824)
54 3hbm_A UDP-sugar hydrolase; PS 98.7 4.4E-07 1.5E-11 82.6 17.4 238 75-386 1-248 (282)
55 2c1x_A UDP-glucose flavonoid 3 97.9 1.5E-05 5E-10 78.5 7.8 153 268-448 270-426 (456)
56 3l7i_A Teichoic acid biosynthe 97.9 0.0019 6.6E-08 67.5 24.2 324 74-467 352-716 (729)
57 2pq6_A UDP-glucuronosyl/UDP-gl 97.8 0.00017 5.8E-09 71.5 13.5 154 268-448 294-453 (482)
58 3hbf_A Flavonoid 3-O-glucosylt 97.8 0.00019 6.4E-09 70.1 12.3 155 268-448 272-428 (454)
59 1ygp_A Yeast glycogen phosphor 97.7 0.0012 4.2E-08 67.4 16.7 140 268-415 598-761 (879)
60 3tov_A Glycosyl transferase fa 97.6 0.0052 1.8E-07 57.9 19.5 108 258-387 173-285 (349)
61 2gt1_A Lipopolysaccharide hept 97.6 0.023 7.7E-07 52.9 22.9 143 264-433 173-322 (326)
62 2acv_A Triterpene UDP-glucosyl 97.4 0.00099 3.4E-08 65.5 11.7 147 268-438 275-431 (463)
63 1psw_A ADP-heptose LPS heptosy 97.3 0.0012 4.2E-08 62.2 10.4 111 257-388 167-286 (348)
64 2jzc_A UDP-N-acetylglucosamine 97.2 0.00013 4.5E-09 63.5 2.3 79 340-430 115-196 (224)
65 2vch_A Hydroquinone glucosyltr 97.1 0.0053 1.8E-07 60.6 13.2 85 341-433 341-429 (480)
66 2bw0_A 10-FTHFDH, 10-formyltet 90.8 0.6 2.1E-05 43.1 7.6 79 71-158 19-107 (329)
67 3q0i_A Methionyl-tRNA formyltr 88.2 1.4 4.8E-05 40.3 7.9 81 71-158 4-93 (318)
68 3auf_A Glycinamide ribonucleot 86.3 5.2 0.00018 34.6 10.0 75 73-158 21-109 (229)
69 2ywr_A Phosphoribosylglycinami 85.9 4.5 0.00015 34.6 9.4 74 74-158 1-88 (216)
70 4gi5_A Quinone reductase; prot 85.6 1.2 4.2E-05 39.9 5.8 43 70-112 18-61 (280)
71 1k68_A Phytochrome response re 85.4 5.8 0.0002 30.4 9.4 111 309-432 3-130 (140)
72 3egc_A Putative ribose operon 85.1 20 0.00067 31.7 18.4 214 72-347 6-222 (291)
73 3jte_A Response regulator rece 85.0 5.1 0.00017 31.0 8.9 111 309-434 4-124 (143)
74 3tqq_A Methionyl-tRNA formyltr 84.9 2.4 8.1E-05 38.8 7.5 79 73-158 1-88 (314)
75 3h75_A Periplasmic sugar-bindi 84.7 24 0.00081 32.3 20.8 54 284-349 188-243 (350)
76 3kht_A Response regulator; PSI 84.4 6 0.00021 30.7 9.1 112 308-432 5-127 (144)
77 3av3_A Phosphoribosylglycinami 83.8 6.4 0.00022 33.5 9.4 74 74-158 3-90 (212)
78 2l2q_A PTS system, cellobiose- 83.5 7.2 0.00025 29.1 8.6 71 311-386 8-80 (109)
79 2ixd_A LMBE-related protein; h 82.9 5.9 0.0002 34.6 9.0 85 72-158 1-105 (242)
80 3heb_A Response regulator rece 82.5 6.7 0.00023 30.8 8.7 111 308-431 4-133 (152)
81 4ds3_A Phosphoribosylglycinami 82.0 7.8 0.00027 32.9 9.1 76 72-158 5-94 (209)
82 3rfo_A Methionyl-tRNA formyltr 81.9 4.6 0.00016 36.9 8.1 79 73-158 3-90 (317)
83 3e8x_A Putative NAD-dependent 81.0 3.7 0.00013 35.4 7.1 75 69-158 16-92 (236)
84 1qkk_A DCTD, C4-dicarboxylate 80.8 11 0.00038 29.5 9.5 111 309-434 4-122 (155)
85 3grc_A Sensor protein, kinase; 80.7 12 0.00041 28.6 9.5 110 308-432 6-126 (140)
86 3h1g_A Chemotaxis protein CHEY 80.4 10 0.00034 28.7 8.8 111 308-432 5-126 (129)
87 2zay_A Response regulator rece 80.3 6.6 0.00023 30.5 7.9 111 307-432 7-127 (147)
88 2a5l_A Trp repressor binding p 79.7 2.6 8.8E-05 35.4 5.4 41 72-113 3-43 (200)
89 3ilh_A Two component response 78.9 11 0.00038 29.0 8.8 116 307-435 8-141 (146)
90 3kcn_A Adenylate cyclase homol 78.2 15 0.0005 28.7 9.4 111 309-435 5-125 (151)
91 1k66_A Phytochrome response re 77.8 12 0.00043 28.8 8.8 112 308-432 6-137 (149)
92 1fmt_A Methionyl-tRNA FMet for 77.6 8.6 0.00029 35.0 8.5 79 73-158 2-89 (314)
93 2rjn_A Response regulator rece 77.4 16 0.00053 28.6 9.3 113 307-434 6-127 (154)
94 2pln_A HP1043, response regula 77.3 9.7 0.00033 29.1 7.9 108 307-433 17-133 (137)
95 1fy2_A Aspartyl dipeptidase; s 77.1 10 0.00034 32.8 8.5 92 284-386 16-117 (229)
96 1i3c_A Response regulator RCP1 77.1 14 0.00048 28.7 8.9 112 307-431 7-135 (149)
97 3cg4_A Response regulator rece 76.6 13 0.00046 28.4 8.6 111 307-432 6-126 (142)
98 3o74_A Fructose transport syst 76.6 37 0.0013 29.4 19.0 210 74-347 2-215 (272)
99 2hy5_A Putative sulfurtransfer 76.2 4.6 0.00016 31.3 5.5 41 75-115 1-43 (130)
100 3cnb_A DNA-binding response re 76.0 20 0.0007 27.2 9.6 113 307-433 7-130 (143)
101 2zki_A 199AA long hypothetical 75.5 3.1 0.00011 34.9 4.7 40 73-114 3-42 (199)
102 2d1p_A TUSD, hypothetical UPF0 75.4 5 0.00017 31.6 5.5 42 74-115 12-55 (140)
103 1dbw_A Transcriptional regulat 75.4 22 0.00077 26.4 9.4 110 308-432 3-120 (126)
104 2j48_A Two-component sensor ki 74.7 8.3 0.00028 28.2 6.6 108 310-432 3-117 (119)
105 4e7p_A Response regulator; DNA 74.7 16 0.00053 28.5 8.6 112 309-433 21-140 (150)
106 3hzh_A Chemotaxis response reg 74.3 14 0.00047 29.2 8.2 109 309-432 37-156 (157)
107 1uan_A Hypothetical protein TT 74.1 15 0.0005 31.6 8.7 38 74-113 1-38 (227)
108 3eul_A Possible nitrate/nitrit 74.0 19 0.00064 28.0 9.0 114 307-433 14-135 (152)
109 3h5i_A Response regulator/sens 74.0 27 0.00092 26.6 10.9 110 308-432 5-123 (140)
110 2qzj_A Two-component response 74.0 11 0.00039 28.7 7.5 110 308-432 4-120 (136)
111 3kcq_A Phosphoribosylglycinami 73.7 15 0.0005 31.3 8.4 75 73-158 7-90 (215)
112 3da8_A Probable 5'-phosphoribo 73.7 15 0.00051 31.3 8.4 75 72-158 10-97 (215)
113 2rdm_A Response regulator rece 73.7 26 0.00088 26.2 9.6 109 308-433 5-123 (132)
114 3gt7_A Sensor protein; structu 73.6 24 0.00081 27.6 9.5 111 307-432 6-126 (154)
115 2qvg_A Two component response 72.9 20 0.00067 27.4 8.7 112 308-432 7-134 (143)
116 3e3m_A Transcriptional regulat 71.9 60 0.002 29.6 19.3 215 73-348 69-287 (355)
117 2vzf_A NADH-dependent FMN redu 71.7 6.3 0.00021 33.0 5.7 40 74-113 2-43 (197)
118 1jkx_A GART;, phosphoribosylgl 70.8 33 0.0011 29.1 9.9 73 75-158 1-87 (212)
119 2q62_A ARSH; alpha/beta, flavo 70.6 9.3 0.00032 33.4 6.7 43 71-113 31-74 (247)
120 4had_A Probable oxidoreductase 70.6 13 0.00045 34.3 8.2 108 268-404 21-130 (350)
121 1e2b_A Enzyme IIB-cellobiose; 70.4 5.1 0.00017 29.8 4.2 72 310-386 6-79 (106)
122 3n53_A Response regulator rece 70.1 33 0.0011 26.0 9.4 109 309-433 4-122 (140)
123 3gl9_A Response regulator; bet 70.1 31 0.001 25.5 9.2 108 310-432 4-121 (122)
124 3hdv_A Response regulator; PSI 70.0 28 0.00097 26.2 9.0 112 308-434 7-128 (136)
125 1jx7_A Hypothetical protein YC 69.8 6.1 0.00021 29.7 4.8 41 75-115 2-45 (117)
126 2b4a_A BH3024; flavodoxin-like 69.4 34 0.0012 25.8 9.5 111 307-433 14-131 (138)
127 3i6i_A Putative leucoanthocyan 69.1 23 0.00077 32.5 9.5 79 72-158 8-91 (346)
128 3hv2_A Response regulator/HD d 69.1 30 0.001 26.8 9.1 111 308-433 14-133 (153)
129 1jbe_A Chemotaxis protein CHEY 69.0 32 0.0011 25.4 9.3 111 308-432 4-124 (128)
130 3kkl_A Probable chaperone prot 68.8 7.9 0.00027 33.8 5.8 44 72-115 1-53 (244)
131 3lua_A Response regulator rece 68.6 11 0.00039 28.8 6.4 112 308-434 4-128 (140)
132 3g1w_A Sugar ABC transporter; 68.6 62 0.0021 28.5 21.4 226 73-357 3-233 (305)
133 2pq6_A UDP-glucuronosyl/UDP-gl 68.3 4.7 0.00016 39.3 4.7 39 73-113 7-45 (482)
134 2d1p_B TUSC, hypothetical UPF0 68.0 7.4 0.00025 29.5 4.9 43 74-116 1-44 (119)
135 4g65_A TRK system potassium up 67.9 88 0.003 30.0 20.0 128 282-432 218-366 (461)
136 3p0r_A Azoreductase; structura 67.9 6.9 0.00024 33.3 5.1 41 73-113 3-48 (211)
137 2qsj_A DNA-binding response re 67.8 21 0.00071 27.8 7.9 112 308-433 3-124 (154)
138 3c97_A Signal transduction his 67.5 38 0.0013 25.7 10.8 109 309-432 11-129 (140)
139 3ouz_A Biotin carboxylase; str 67.4 7.4 0.00025 37.4 5.9 36 71-113 3-38 (446)
140 3hdg_A Uncharacterized protein 67.4 29 0.001 26.1 8.6 112 307-433 6-125 (137)
141 3f6r_A Flavodoxin; FMN binding 67.1 8.6 0.0003 30.2 5.3 39 74-113 1-39 (148)
142 3tqr_A Phosphoribosylglycinami 67.0 27 0.00093 29.6 8.6 74 74-158 5-91 (215)
143 2qxy_A Response regulator; reg 66.9 27 0.00092 26.6 8.3 111 308-434 4-122 (142)
144 3i42_A Response regulator rece 66.7 23 0.0008 26.3 7.7 34 72-111 1-34 (127)
145 2r25_B Osmosensing histidine p 66.4 38 0.0013 25.5 9.0 110 309-432 3-126 (133)
146 1tvm_A PTS system, galactitol- 66.2 11 0.00038 28.2 5.5 55 310-365 24-78 (113)
147 3m6m_D Sensory/regulatory prot 66.0 37 0.0013 26.0 9.0 111 307-432 13-135 (143)
148 2hy5_B Intracellular sulfur ox 66.0 9.4 0.00032 29.8 5.1 42 74-115 5-47 (136)
149 4huj_A Uncharacterized protein 65.9 17 0.00057 31.0 7.3 75 68-160 17-91 (220)
150 4f3y_A DHPR, dihydrodipicolina 65.8 16 0.00055 32.4 7.3 37 348-386 65-101 (272)
151 3nhm_A Response regulator; pro 65.8 39 0.0013 25.2 10.0 109 309-433 5-122 (133)
152 1d4a_A DT-diaphorase, quinone 65.7 10 0.00034 33.8 6.0 40 74-113 2-42 (273)
153 3i42_A Response regulator rece 65.7 33 0.0011 25.4 8.5 110 309-433 4-122 (127)
154 3ius_A Uncharacterized conserv 65.4 9.7 0.00033 33.8 5.9 68 73-158 4-71 (286)
155 2xj4_A MIPZ; replication, cell 65.4 7.5 0.00026 34.8 5.1 43 72-114 1-43 (286)
156 3to5_A CHEY homolog; alpha(5)b 65.1 45 0.0016 25.7 9.2 112 307-432 11-132 (134)
157 3t6k_A Response regulator rece 65.1 42 0.0015 25.3 9.7 110 309-433 5-124 (136)
158 2qv0_A Protein MRKE; structura 64.9 43 0.0015 25.4 9.2 112 307-432 8-126 (143)
159 3en0_A Cyanophycinase; serine 64.8 37 0.0013 30.4 9.4 108 269-386 26-149 (291)
160 3eag_A UDP-N-acetylmuramate:L- 64.7 38 0.0013 30.8 9.9 86 74-174 4-92 (326)
161 3qjg_A Epidermin biosynthesis 64.5 9.8 0.00033 31.2 5.1 40 73-115 4-43 (175)
162 3c3m_A Response regulator rece 64.5 35 0.0012 25.9 8.4 110 309-433 4-123 (138)
163 3n7t_A Macrophage binding prot 64.3 11 0.00038 32.9 5.8 42 74-115 9-59 (247)
164 1ydw_A AX110P-like protein; st 64.3 46 0.0016 30.7 10.6 94 269-387 5-100 (362)
165 3cfy_A Putative LUXO repressor 64.2 36 0.0012 25.8 8.5 108 310-432 6-121 (137)
166 3k4h_A Putative transcriptiona 64.1 74 0.0025 27.8 21.6 216 72-348 6-229 (292)
167 2qr3_A Two-component system re 64.0 31 0.0011 26.0 8.1 110 309-433 4-126 (140)
168 3g85_A Transcriptional regulat 64.0 74 0.0025 27.7 17.3 212 72-347 9-224 (289)
169 1meo_A Phosophoribosylglycinam 63.9 36 0.0012 28.7 8.8 73 75-158 1-87 (209)
170 3eod_A Protein HNR; response r 63.4 29 0.00099 25.9 7.7 112 307-433 6-126 (130)
171 1e2b_A Enzyme IIB-cellobiose; 63.0 14 0.00049 27.3 5.4 42 72-115 1-42 (106)
172 4dad_A Putative pilus assembly 63.0 16 0.00053 28.2 6.2 111 307-432 19-140 (146)
173 2gkg_A Response regulator homo 63.0 28 0.00097 25.6 7.5 109 309-433 6-125 (127)
174 3e9m_A Oxidoreductase, GFO/IDH 62.8 47 0.0016 30.2 10.2 90 269-386 4-95 (330)
175 4fb5_A Probable oxidoreductase 62.7 13 0.00045 34.8 6.5 97 269-386 24-122 (393)
176 3q98_A Transcarbamylase; rossm 62.3 47 0.0016 31.2 10.0 85 73-159 190-275 (399)
177 4b4t_W RPN10, 26S proteasome r 62.3 29 0.001 30.6 8.1 64 260-335 98-161 (268)
178 2rk3_A Protein DJ-1; parkinson 61.6 23 0.0008 29.4 7.3 74 72-159 1-75 (197)
179 3b6i_A Flavoprotein WRBA; flav 61.5 12 0.0004 31.1 5.4 40 74-114 1-41 (198)
180 3b2n_A Uncharacterized protein 61.3 46 0.0016 24.9 8.6 112 309-433 4-123 (133)
181 3mc3_A DSRE/DSRF-like family p 61.3 15 0.00051 28.5 5.5 43 73-116 14-58 (134)
182 2fb6_A Conserved hypothetical 61.2 8.2 0.00028 29.2 3.9 68 74-141 7-79 (117)
183 1ydg_A Trp repressor binding p 61.0 13 0.00043 31.4 5.6 41 73-114 5-45 (211)
184 1p6q_A CHEY2; chemotaxis, sign 61.0 44 0.0015 24.7 8.4 110 309-432 7-126 (129)
185 3jvd_A Transcriptional regulat 60.9 95 0.0032 28.0 17.9 204 72-347 62-267 (333)
186 1jzt_A Hypothetical 27.5 kDa p 60.8 13 0.00045 32.4 5.6 37 75-114 59-95 (246)
187 3h5o_A Transcriptional regulat 60.8 95 0.0033 27.9 19.2 212 73-347 61-275 (339)
188 3rc1_A Sugar 3-ketoreductase; 60.6 20 0.00068 33.1 7.2 77 71-163 24-102 (350)
189 1kjn_A MTH0777; hypotethical p 60.0 21 0.00071 28.1 5.8 40 74-113 6-45 (157)
190 3p9x_A Phosphoribosylglycinami 59.7 67 0.0023 27.1 9.6 74 74-158 2-89 (211)
191 3gv0_A Transcriptional regulat 59.5 90 0.0031 27.2 18.5 214 72-347 6-224 (288)
192 4b4o_A Epimerase family protei 59.2 11 0.00038 33.7 5.2 34 75-114 1-34 (298)
193 3huu_A Transcription regulator 59.0 95 0.0033 27.4 16.8 210 73-348 21-239 (305)
194 8abp_A L-arabinose-binding pro 58.7 95 0.0033 27.3 16.0 231 74-356 2-242 (306)
195 3ijp_A DHPR, dihydrodipicolina 58.4 20 0.00069 32.0 6.5 37 348-386 80-116 (288)
196 3u7r_A NADPH-dependent FMN red 58.4 13 0.00046 30.9 5.1 40 73-112 1-40 (190)
197 3cu5_A Two component transcrip 58.3 58 0.002 24.7 10.6 110 310-432 4-122 (141)
198 1rw7_A YDR533CP; alpha-beta sa 58.2 16 0.00056 31.6 5.9 44 72-115 1-53 (243)
199 1xv5_A AGT, DNA alpha-glucosyl 58.1 81 0.0028 26.3 23.1 332 75-451 2-385 (401)
200 4ep1_A Otcase, ornithine carba 58.1 41 0.0014 30.8 8.6 78 73-158 178-255 (340)
201 3u3x_A Oxidoreductase; structu 58.0 53 0.0018 30.3 9.7 91 269-387 25-117 (361)
202 2yfk_A Aspartate/ornithine car 58.0 60 0.0021 30.6 9.9 85 73-159 187-272 (418)
203 2fzv_A Putative arsenical resi 57.9 39 0.0013 30.0 8.2 43 72-114 56-99 (279)
204 3cg0_A Response regulator rece 57.3 58 0.002 24.4 9.9 111 307-432 8-127 (140)
205 3zqu_A Probable aromatic acid 57.0 20 0.00067 30.4 5.8 38 73-113 3-40 (209)
206 3f6c_A Positive transcription 56.9 58 0.002 24.2 10.4 110 309-433 2-120 (134)
207 4a8t_A Putrescine carbamoyltra 56.8 55 0.0019 29.9 9.2 75 73-156 174-248 (339)
208 2bln_A Protein YFBG; transfera 56.8 32 0.0011 31.0 7.7 77 75-158 1-83 (305)
209 4a8p_A Putrescine carbamoyltra 56.7 56 0.0019 30.1 9.2 75 73-156 152-226 (355)
210 2qv7_A Diacylglycerol kinase D 56.6 23 0.00078 32.5 6.9 44 71-114 21-65 (337)
211 3oqb_A Oxidoreductase; structu 56.6 23 0.0008 33.0 7.1 54 325-386 56-111 (383)
212 3tem_A Ribosyldihydronicotinam 56.5 14 0.00048 31.8 5.1 39 75-113 2-41 (228)
213 1mb3_A Cell division response 56.4 55 0.0019 23.8 9.7 108 310-432 3-120 (124)
214 2gwr_A DNA-binding response re 56.2 72 0.0025 27.0 9.8 109 309-432 6-121 (238)
215 3miz_A Putative transcriptiona 56.1 1.1E+02 0.0036 27.0 18.1 217 72-347 11-233 (301)
216 1zgz_A Torcad operon transcrip 56.1 56 0.0019 23.8 9.4 108 310-432 4-118 (122)
217 1srr_A SPO0F, sporulation resp 56.0 57 0.0019 23.9 8.7 109 309-432 4-120 (124)
218 3gd5_A Otcase, ornithine carba 56.0 48 0.0016 30.1 8.6 78 73-158 156-233 (323)
219 1ys7_A Transcriptional regulat 55.6 90 0.0031 26.1 10.3 110 308-432 7-124 (233)
220 3crn_A Response regulator rece 55.6 61 0.0021 24.1 9.6 109 309-432 4-120 (132)
221 3f6p_A Transcriptional regulat 55.4 58 0.002 23.8 9.1 108 310-432 4-118 (120)
222 1rcu_A Conserved hypothetical 55.3 9.2 0.00032 32.0 3.5 67 351-430 113-192 (195)
223 4h3v_A Oxidoreductase domain p 54.8 24 0.00081 32.9 6.9 97 269-386 5-103 (390)
224 2vch_A Hydroquinone glucosyltr 54.8 10 0.00035 36.9 4.3 39 74-114 6-45 (480)
225 3rqi_A Response regulator prot 54.8 27 0.00093 28.3 6.5 111 308-433 7-125 (184)
226 2hpv_A FMN-dependent NADH-azor 54.7 16 0.00055 30.7 5.1 40 74-113 1-45 (208)
227 3gem_A Short chain dehydrogena 54.7 37 0.0013 29.6 7.7 34 76-114 28-61 (260)
228 3ec7_A Putative dehydrogenase; 54.4 51 0.0017 30.4 8.9 81 69-163 18-100 (357)
229 3osu_A 3-oxoacyl-[acyl-carrier 54.4 30 0.001 29.8 7.0 35 74-113 3-37 (246)
230 2i6u_A Otcase, ornithine carba 54.3 67 0.0023 28.9 9.3 79 73-158 147-225 (307)
231 3f2v_A General stress protein 54.1 8.7 0.0003 32.1 3.2 37 74-111 1-37 (192)
232 3a10_A Response regulator; pho 54.0 58 0.002 23.4 10.0 107 310-431 3-115 (116)
233 1vlv_A Otcase, ornithine carba 53.9 58 0.002 29.6 8.8 79 73-158 166-244 (325)
234 3enk_A UDP-glucose 4-epimerase 53.8 70 0.0024 28.8 9.8 25 91-115 16-40 (341)
235 4e3z_A Putative oxidoreductase 53.8 33 0.0011 30.1 7.3 37 72-113 23-59 (272)
236 3r6w_A FMN-dependent NADH-azor 53.7 13 0.00045 31.4 4.4 40 74-113 1-44 (212)
237 2ark_A Flavodoxin; FMN, struct 53.7 19 0.00063 29.7 5.2 39 74-113 4-43 (188)
238 3cea_A MYO-inositol 2-dehydrog 53.5 80 0.0027 28.7 10.2 92 268-386 6-99 (346)
239 3ty2_A 5'-nucleotidase SURE; s 53.3 22 0.00075 31.1 5.7 40 73-116 10-49 (261)
240 3rof_A Low molecular weight pr 53.3 24 0.00083 28.3 5.6 86 71-159 3-92 (158)
241 1sqs_A Conserved hypothetical 52.9 17 0.00059 31.4 5.2 40 74-113 1-42 (242)
242 1g63_A Epidermin modifying enz 52.9 14 0.00049 30.4 4.3 38 74-114 2-39 (181)
243 3r0j_A Possible two component 52.9 85 0.0029 26.8 9.8 110 308-432 23-140 (250)
244 2jba_A Phosphate regulon trans 52.7 40 0.0014 24.8 6.8 108 310-432 4-121 (127)
245 3moi_A Probable dehydrogenase; 52.4 55 0.0019 30.5 9.0 65 307-386 26-92 (387)
246 1pvv_A Otcase, ornithine carba 52.4 71 0.0024 28.9 9.1 78 73-158 154-231 (315)
247 3u9l_A 3-oxoacyl-[acyl-carrier 52.3 58 0.002 29.5 8.9 33 76-113 6-38 (324)
248 3evn_A Oxidoreductase, GFO/IDH 52.3 32 0.0011 31.3 7.1 90 270-387 5-96 (329)
249 3fvw_A Putative NAD(P)H-depend 52.2 20 0.00067 29.8 5.2 39 74-113 2-41 (192)
250 1p9l_A Dihydrodipicolinate red 52.1 72 0.0025 27.6 8.9 67 310-386 2-73 (245)
251 1dcf_A ETR1 protein; beta-alph 51.8 29 0.00099 26.2 5.9 112 307-433 6-129 (136)
252 3mm4_A Histidine kinase homolo 51.8 31 0.0011 28.7 6.4 112 308-435 61-198 (206)
253 3rc1_A Sugar 3-ketoreductase; 51.7 32 0.0011 31.7 7.0 90 269-386 26-117 (350)
254 1zh8_A Oxidoreductase; TM0312, 51.6 64 0.0022 29.4 9.1 92 268-387 16-111 (340)
255 1hdo_A Biliverdin IX beta redu 51.6 21 0.00072 29.5 5.4 35 73-113 2-36 (206)
256 3cs3_A Sugar-binding transcrip 51.4 1.2E+02 0.0041 26.2 19.9 42 72-113 6-47 (277)
257 2pn1_A Carbamoylphosphate synt 51.3 33 0.0011 31.0 7.1 34 72-113 2-37 (331)
258 3hly_A Flavodoxin-like domain; 51.2 49 0.0017 26.3 7.3 39 75-114 1-39 (161)
259 3l4e_A Uncharacterized peptida 50.9 26 0.00089 29.5 5.7 74 308-386 27-117 (206)
260 3dty_A Oxidoreductase, GFO/IDH 50.9 1.2E+02 0.004 28.3 11.0 68 307-386 38-113 (398)
261 3rpe_A MDAB, modulator of drug 50.8 45 0.0016 28.3 7.2 41 73-113 24-69 (218)
262 1t5b_A Acyl carrier protein ph 50.5 18 0.00062 30.0 4.8 40 74-113 1-44 (201)
263 1mvo_A PHOP response regulator 50.2 76 0.0026 23.6 10.1 110 309-433 4-121 (136)
264 3qxc_A Dethiobiotin synthetase 50.1 24 0.00081 30.7 5.5 41 71-111 17-57 (242)
265 2ayx_A Sensor kinase protein R 49.9 1.2E+02 0.0042 25.9 10.4 110 308-432 129-246 (254)
266 1xhf_A DYE resistance, aerobic 49.3 73 0.0025 23.1 9.4 108 310-432 5-119 (123)
267 3kto_A Response regulator rece 49.3 25 0.00087 26.6 5.2 111 308-433 6-126 (136)
268 2phj_A 5'-nucleotidase SURE; S 49.3 27 0.00093 30.4 5.6 39 74-116 1-39 (251)
269 4gqa_A NAD binding oxidoreduct 49.2 68 0.0023 30.1 9.1 99 268-386 24-124 (412)
270 3q9l_A Septum site-determining 49.0 22 0.00076 30.8 5.3 40 75-114 2-41 (260)
271 2f62_A Nucleoside 2-deoxyribos 48.9 67 0.0023 25.7 7.6 36 351-387 62-103 (161)
272 3cz5_A Two-component response 48.9 88 0.003 23.9 10.3 111 307-432 4-124 (153)
273 4hs4_A Chromate reductase; tri 48.9 15 0.00053 30.7 4.0 40 72-111 4-44 (199)
274 1p2f_A Response regulator; DRR 48.9 37 0.0013 28.3 6.6 107 310-432 4-116 (220)
275 3lte_A Response regulator; str 48.7 79 0.0027 23.3 9.1 110 308-433 6-125 (132)
276 3tpf_A Otcase, ornithine carba 48.6 91 0.0031 28.0 9.1 77 74-158 146-222 (307)
277 3mcu_A Dipicolinate synthase, 48.6 23 0.00079 29.9 4.9 39 73-115 4-44 (207)
278 4dzz_A Plasmid partitioning pr 48.4 23 0.00078 29.3 5.1 39 75-113 1-39 (206)
279 2prs_A High-affinity zinc upta 47.9 39 0.0013 30.1 6.7 91 349-449 41-156 (284)
280 3oid_A Enoyl-[acyl-carrier-pro 47.8 42 0.0014 29.2 6.9 35 74-113 3-37 (258)
281 3lqk_A Dipicolinate synthase s 47.8 25 0.00086 29.5 5.1 41 73-116 6-47 (201)
282 3tfo_A Putative 3-oxoacyl-(acy 47.7 39 0.0013 29.6 6.7 36 73-113 2-37 (264)
283 1g3q_A MIND ATPase, cell divis 47.6 26 0.00088 29.9 5.4 40 75-114 2-41 (237)
284 1kgs_A DRRD, DNA binding respo 47.3 1.2E+02 0.0041 25.1 10.0 109 309-432 3-119 (225)
285 3nva_A CTP synthase; rossman f 47.3 2.1E+02 0.0072 27.9 21.2 162 202-386 206-383 (535)
286 3dfz_A SIRC, precorrin-2 dehyd 47.2 72 0.0025 27.2 7.9 72 72-159 29-100 (223)
287 3v5n_A Oxidoreductase; structu 47.2 1.3E+02 0.0046 28.2 10.8 69 307-387 63-139 (417)
288 4e21_A 6-phosphogluconate dehy 47.1 30 0.001 32.1 6.0 73 71-161 19-92 (358)
289 1duv_G Octase-1, ornithine tra 47.0 73 0.0025 29.0 8.4 79 73-158 154-232 (333)
290 1vl6_A Malate oxidoreductase; 46.6 1.2E+02 0.004 28.3 9.7 36 348-386 255-290 (388)
291 2lpm_A Two-component response 46.5 30 0.001 26.3 5.0 109 308-431 8-120 (123)
292 2pl1_A Transcriptional regulat 46.5 80 0.0027 22.8 10.0 108 310-432 2-117 (121)
293 3snk_A Response regulator CHEY 46.4 31 0.0011 26.0 5.2 110 308-432 14-132 (135)
294 2ixa_A Alpha-N-acetylgalactosa 46.3 73 0.0025 30.4 8.9 99 269-386 19-119 (444)
295 3dm5_A SRP54, signal recogniti 46.2 1.7E+02 0.0058 27.9 11.2 81 75-159 101-191 (443)
296 3uuw_A Putative oxidoreductase 45.8 53 0.0018 29.4 7.4 67 305-386 28-94 (308)
297 2h3h_A Sugar ABC transporter, 45.6 1.6E+02 0.0054 26.0 19.1 60 284-355 165-226 (313)
298 3fwz_A Inner membrane protein 45.6 47 0.0016 25.5 6.2 71 74-160 7-81 (140)
299 3nbm_A PTS system, lactose-spe 45.4 50 0.0017 24.4 5.8 71 311-386 10-82 (108)
300 2acv_A Triterpene UDP-glucosyl 45.4 21 0.00072 34.4 4.9 39 74-114 9-49 (463)
301 2q1w_A Putative nucleotide sug 45.1 25 0.00086 31.9 5.2 42 67-114 14-55 (333)
302 3hs3_A Ribose operon repressor 44.8 1.5E+02 0.0052 25.5 15.4 42 72-113 8-50 (277)
303 3kzn_A Aotcase, N-acetylornith 44.7 1.3E+02 0.0044 27.8 9.8 83 73-157 189-272 (359)
304 2ejb_A Probable aromatic acid 44.7 38 0.0013 28.1 5.6 37 75-114 2-38 (189)
305 1dxh_A Ornithine carbamoyltran 44.4 77 0.0026 28.9 8.1 79 73-158 154-232 (335)
306 3l6u_A ABC-type sugar transpor 44.2 1.6E+02 0.0054 25.5 21.4 215 73-347 7-228 (293)
307 2a9o_A Response regulator; ess 43.9 87 0.003 22.5 10.0 108 310-432 3-117 (120)
308 1hyq_A MIND, cell division inh 43.9 30 0.001 30.1 5.3 39 76-114 3-41 (263)
309 1f4p_A Flavodoxin; electron tr 43.6 28 0.00096 27.1 4.6 36 75-111 1-36 (147)
310 1qzu_A Hypothetical protein MD 43.5 29 0.00099 29.2 4.8 40 72-114 17-57 (206)
311 4h31_A Otcase, ornithine carba 43.5 77 0.0026 29.3 8.0 77 74-157 181-257 (358)
312 2f5x_A BUGD; periplasmic bindi 43.5 1.8E+02 0.0062 26.0 12.2 151 272-445 113-277 (312)
313 3db2_A Putative NADPH-dependen 43.4 45 0.0015 30.6 6.7 75 72-162 3-78 (354)
314 2hna_A Protein MIOC, flavodoxi 43.2 26 0.0009 27.3 4.4 35 75-110 2-36 (147)
315 3u7i_A FMN-dependent NADH-azor 43.2 32 0.0011 29.3 5.2 41 73-113 3-50 (223)
316 1jl3_A Arsenate reductase; alp 43.1 87 0.003 24.2 7.3 81 72-159 1-83 (139)
317 3t7c_A Carveol dehydrogenase; 43.0 1.5E+02 0.0052 26.1 10.0 33 76-113 29-61 (299)
318 1zq6_A Otcase, ornithine carba 43.0 1.3E+02 0.0043 27.8 9.3 82 73-158 189-273 (359)
319 3llv_A Exopolyphosphatase-rela 42.6 60 0.0021 24.8 6.4 70 74-159 6-79 (141)
320 3gpi_A NAD-dependent epimerase 42.5 25 0.00086 31.0 4.7 37 72-115 1-37 (286)
321 1id1_A Putative potassium chan 42.5 27 0.00092 27.5 4.3 76 72-159 1-80 (153)
322 3svl_A Protein YIEF; E. coli C 42.4 12 0.0004 31.3 2.2 40 73-112 3-43 (193)
323 3euw_A MYO-inositol dehydrogen 42.4 69 0.0024 29.2 7.8 65 307-386 27-93 (344)
324 4dmm_A 3-oxoacyl-[acyl-carrier 42.3 53 0.0018 28.7 6.7 33 76-113 29-61 (269)
325 3sc4_A Short chain dehydrogena 42.2 1.1E+02 0.0037 26.9 8.8 36 75-115 9-44 (285)
326 4hkt_A Inositol 2-dehydrogenas 42.1 82 0.0028 28.5 8.2 64 307-386 26-91 (331)
327 1tmy_A CHEY protein, TMY; chem 42.0 94 0.0032 22.3 8.8 108 310-431 4-119 (120)
328 3q9s_A DNA-binding response re 41.9 1E+02 0.0036 26.3 8.5 109 309-432 38-153 (249)
329 4egb_A DTDP-glucose 4,6-dehydr 41.9 72 0.0025 28.8 7.8 35 72-112 22-58 (346)
330 1e4e_A Vancomycin/teicoplanin 41.8 17 0.0006 33.3 3.5 42 72-113 1-44 (343)
331 2hqr_A Putative transcriptiona 41.5 60 0.002 27.1 6.8 104 311-433 3-115 (223)
332 3dbi_A Sugar-binding transcrip 41.4 1.9E+02 0.0066 25.8 21.6 214 72-347 59-278 (338)
333 4hv4_A UDP-N-acetylmuramate--L 41.4 1.4E+02 0.0048 28.9 10.1 84 74-174 22-107 (494)
334 1iow_A DD-ligase, DDLB, D-ALA\ 41.4 27 0.00093 31.1 4.7 39 74-113 2-43 (306)
335 3hv2_A Response regulator/HD d 41.3 49 0.0017 25.5 5.8 34 72-111 12-45 (153)
336 3r0j_A Possible two component 41.2 88 0.003 26.7 7.9 34 71-110 20-53 (250)
337 3jy6_A Transcriptional regulat 41.2 1.7E+02 0.0059 25.1 16.1 209 73-347 6-217 (276)
338 3slg_A PBGP3 protein; structur 41.1 25 0.00087 32.4 4.6 40 70-115 20-60 (372)
339 3mz0_A Inositol 2-dehydrogenas 41.0 1.3E+02 0.0045 27.2 9.5 68 306-386 25-94 (344)
340 1xvl_A Mn transporter, MNTC pr 40.9 49 0.0017 30.1 6.3 87 352-450 90-185 (321)
341 3m2t_A Probable dehydrogenase; 40.8 36 0.0012 31.4 5.5 67 306-386 28-96 (359)
342 2pzm_A Putative nucleotide sug 40.7 39 0.0013 30.6 5.7 38 70-113 16-53 (330)
343 2i87_A D-alanine-D-alanine lig 40.5 16 0.00054 34.0 3.0 42 72-113 1-44 (364)
344 3fgn_A Dethiobiotin synthetase 40.4 41 0.0014 29.3 5.5 39 73-111 24-62 (251)
345 3jvi_A Protein tyrosine phosph 40.4 63 0.0022 25.8 6.2 84 72-159 2-92 (161)
346 2vo1_A CTP synthase 1; pyrimid 40.3 42 0.0014 29.4 5.3 43 71-113 19-62 (295)
347 2w37_A Ornithine carbamoyltran 40.3 88 0.003 28.8 7.8 79 73-158 175-253 (359)
348 2ph1_A Nucleotide-binding prot 40.2 36 0.0012 29.7 5.2 41 75-115 18-58 (262)
349 3of5_A Dethiobiotin synthetase 40.0 44 0.0015 28.5 5.6 38 74-111 3-40 (228)
350 3hn2_A 2-dehydropantoate 2-red 40.0 58 0.002 29.3 6.7 33 74-113 2-34 (312)
351 3hn7_A UDP-N-acetylmuramate-L- 39.9 1.6E+02 0.0054 28.8 10.2 87 73-174 18-106 (524)
352 3ijr_A Oxidoreductase, short c 39.8 1.3E+02 0.0045 26.5 9.0 33 76-113 48-80 (291)
353 4amu_A Ornithine carbamoyltran 39.8 94 0.0032 28.7 7.9 78 73-157 179-258 (365)
354 3dhn_A NAD-dependent epimerase 39.7 34 0.0011 28.8 4.8 34 74-113 4-37 (227)
355 3o1l_A Formyltetrahydrofolate 39.5 1.4E+02 0.0047 26.8 8.9 73 73-158 104-189 (302)
356 3ea0_A ATPase, para family; al 39.4 35 0.0012 29.1 5.0 41 74-114 3-44 (245)
357 1vl8_A Gluconate 5-dehydrogena 39.4 43 0.0015 29.3 5.6 40 68-113 15-54 (267)
358 2b69_A UDP-glucuronate decarbo 39.0 33 0.0011 31.2 5.0 37 71-113 24-60 (343)
359 3n8i_A Low molecular weight ph 39.0 60 0.0021 25.8 5.8 87 71-160 2-94 (157)
360 1qyc_A Phenylcoumaran benzylic 38.9 1E+02 0.0035 27.2 8.2 79 74-158 4-85 (308)
361 1p3y_1 MRSD protein; flavoprot 38.8 33 0.0011 28.6 4.3 39 72-113 6-44 (194)
362 3c3k_A Alanine racemase; struc 38.8 1.9E+02 0.0065 25.0 20.6 41 73-113 7-47 (285)
363 1t0i_A YLR011WP; FMN binding p 38.7 48 0.0017 27.1 5.5 37 75-111 1-44 (191)
364 3ec7_A Putative dehydrogenase; 38.7 82 0.0028 28.9 7.6 68 306-386 46-115 (357)
365 3qiv_A Short-chain dehydrogena 38.6 76 0.0026 27.2 7.1 33 75-112 9-41 (253)
366 3f5d_A Protein YDEA; unknow pr 38.6 35 0.0012 28.7 4.6 69 72-158 1-71 (206)
367 1oth_A Protein (ornithine tran 38.6 94 0.0032 28.1 7.7 77 73-157 154-230 (321)
368 2bon_A Lipid kinase; DAG kinas 38.6 42 0.0014 30.6 5.5 44 68-113 22-66 (332)
369 2vvp_A Ribose-5-phosphate isom 38.5 29 0.00099 27.9 3.7 37 72-112 1-37 (162)
370 3i4f_A 3-oxoacyl-[acyl-carrier 38.1 62 0.0021 28.0 6.5 35 75-114 7-41 (264)
371 3d3k_A Enhancer of mRNA-decapp 38.0 55 0.0019 28.7 5.9 37 75-114 86-122 (259)
372 3lcm_A SMU.1420, putative oxid 38.0 39 0.0013 28.0 4.8 38 75-113 1-39 (196)
373 3grf_A Ornithine carbamoyltran 38.0 1.1E+02 0.0038 27.8 8.1 79 73-158 160-242 (328)
374 2w37_A Ornithine carbamoyltran 38.0 2.1E+02 0.0072 26.3 9.9 108 232-364 145-253 (359)
375 2iz6_A Molybdenum cofactor car 38.0 17 0.0006 29.7 2.5 69 351-432 102-173 (176)
376 3h7a_A Short chain dehydrogena 38.0 1E+02 0.0036 26.4 7.9 33 76-113 8-40 (252)
377 3gk3_A Acetoacetyl-COA reducta 37.9 64 0.0022 28.1 6.5 37 72-113 22-58 (269)
378 2i6u_A Otcase, ornithine carba 37.6 2.1E+02 0.0073 25.6 9.8 86 260-364 139-225 (307)
379 2r85_A PURP protein PF1517; AT 37.2 24 0.00083 32.0 3.7 32 74-113 2-33 (334)
380 1h6d_A Precursor form of gluco 37.2 42 0.0014 32.0 5.5 95 268-386 81-178 (433)
381 1zq6_A Otcase, ornithine carba 37.1 1.8E+02 0.0061 26.8 9.3 89 259-364 178-273 (359)
382 3vk5_A MOEO5; TIM barrel, tran 37.1 45 0.0015 29.5 5.1 89 278-378 44-137 (286)
383 3d3j_A Enhancer of mRNA-decapp 37.0 59 0.002 29.3 6.1 37 75-114 133-169 (306)
384 3r6d_A NAD-dependent epimerase 36.6 45 0.0015 27.9 5.1 23 91-113 16-39 (221)
385 2qpq_A Protein BUG27; alpha/be 36.6 2.1E+02 0.0071 25.5 9.8 150 273-445 105-268 (301)
386 2gkg_A Response regulator homo 36.5 30 0.001 25.4 3.6 34 72-111 3-36 (127)
387 3n0v_A Formyltetrahydrofolate 36.4 1.8E+02 0.0062 25.8 9.1 73 73-158 89-174 (286)
388 3gbv_A Putative LACI-family tr 36.4 2.1E+02 0.0072 24.8 22.3 247 72-379 6-265 (304)
389 3l3b_A ES1 family protein; ssg 36.3 51 0.0018 28.5 5.4 43 73-115 22-66 (242)
390 3bfv_A CAPA1, CAPB2, membrane 36.3 45 0.0015 29.4 5.2 40 74-113 81-120 (271)
391 3sds_A Ornithine carbamoyltran 36.3 2.2E+02 0.0075 26.1 9.8 37 73-115 187-223 (353)
392 3kjh_A CO dehydrogenase/acetyl 36.2 28 0.00094 29.9 3.8 36 75-114 1-38 (254)
393 1ehi_A LMDDL2, D-alanine:D-lac 36.0 34 0.0012 31.9 4.6 42 72-113 1-45 (377)
394 2o8n_A APOA-I binding protein; 35.9 45 0.0015 29.3 5.0 37 75-114 80-116 (265)
395 3ezl_A Acetoacetyl-COA reducta 35.8 1.2E+02 0.0043 25.8 8.1 35 76-115 14-48 (256)
396 3dfz_A SIRC, precorrin-2 dehyd 35.7 2E+02 0.0069 24.3 13.7 138 286-453 41-188 (223)
397 3orf_A Dihydropteridine reduct 35.7 50 0.0017 28.5 5.4 35 76-115 23-57 (251)
398 3qvo_A NMRA family protein; st 35.4 45 0.0015 28.4 5.0 37 71-113 20-57 (236)
399 3u5t_A 3-oxoacyl-[acyl-carrier 35.3 77 0.0026 27.6 6.6 35 75-114 27-61 (267)
400 2ho3_A Oxidoreductase, GFO/IDH 35.3 1.1E+02 0.0037 27.6 7.8 67 307-387 24-91 (325)
401 1s8n_A Putative antiterminator 35.3 1.8E+02 0.0061 23.6 11.2 111 309-434 14-132 (205)
402 2o1e_A YCDH; alpha-beta protei 35.2 73 0.0025 28.7 6.5 89 351-450 65-173 (312)
403 2dvz_A BUGE, putative exported 35.1 2.5E+02 0.0085 25.2 12.3 150 273-445 118-281 (314)
404 3jte_A Response regulator rece 35.1 42 0.0014 25.4 4.4 34 72-111 1-34 (143)
405 1rcu_A Conserved hypothetical 35.0 60 0.002 27.0 5.3 37 72-108 21-62 (195)
406 2qr3_A Two-component system re 35.0 41 0.0014 25.3 4.3 34 72-111 1-34 (140)
407 2z06_A Putative uncharacterize 35.0 1.2E+02 0.0043 26.2 7.6 81 272-365 2-87 (252)
408 4imr_A 3-oxoacyl-(acyl-carrier 35.0 1.5E+02 0.0053 25.8 8.6 35 76-115 34-68 (275)
409 2ew2_A 2-dehydropantoate 2-red 35.0 37 0.0013 30.4 4.5 33 73-112 2-34 (316)
410 1zh2_A KDP operon transcriptio 34.9 1.2E+02 0.0042 21.6 8.2 108 310-432 3-117 (121)
411 3q9s_A DNA-binding response re 34.9 80 0.0028 27.1 6.6 35 71-111 34-68 (249)
412 4em8_A Ribose 5-phosphate isom 34.9 45 0.0016 26.2 4.3 37 72-112 5-41 (148)
413 3ujp_A Mn transporter subunit; 34.7 70 0.0024 28.8 6.2 88 351-450 75-171 (307)
414 1dc7_A NTRC, nitrogen regulati 34.7 60 0.0021 23.6 5.1 108 310-432 5-120 (124)
415 1tlt_A Putative oxidoreductase 34.6 69 0.0024 28.8 6.3 66 306-386 28-93 (319)
416 3q2i_A Dehydrogenase; rossmann 34.6 1.1E+02 0.0039 27.9 7.9 90 269-386 12-103 (354)
417 2a9f_A Putative malic enzyme ( 34.5 1.6E+02 0.0055 27.5 8.6 73 305-386 185-285 (398)
418 2nzw_A Alpha1,3-fucosyltransfe 34.4 47 0.0016 30.8 5.0 82 348-440 223-307 (371)
419 3kke_A LACI family transcripti 34.4 2.3E+02 0.008 24.7 21.3 212 73-348 14-234 (303)
420 3fni_A Putative diflavin flavo 34.4 75 0.0026 25.2 5.8 39 75-114 5-43 (159)
421 3db2_A Putative NADPH-dependen 34.3 1.5E+02 0.0052 26.9 8.8 67 305-386 26-94 (354)
422 1duv_G Octase-1, ornithine tra 34.1 2.7E+02 0.0092 25.3 10.9 109 232-364 122-232 (333)
423 1w25_A Stalked-cell differenti 34.1 2.9E+02 0.0099 26.0 11.1 110 310-434 3-122 (459)
424 3p2y_A Alanine dehydrogenase/p 34.1 1.3E+02 0.0045 28.0 8.0 50 348-402 257-310 (381)
425 3m2p_A UDP-N-acetylglucosamine 34.1 43 0.0015 29.9 4.8 34 74-113 2-35 (311)
426 3lou_A Formyltetrahydrofolate 34.0 2.1E+02 0.0072 25.4 9.2 73 73-158 94-179 (292)
427 2xzm_B RPS0E; ribosome, transl 34.0 1.7E+02 0.0057 25.2 8.0 89 282-386 47-141 (241)
428 2z1m_A GDP-D-mannose dehydrata 34.0 49 0.0017 29.9 5.3 37 72-114 1-37 (345)
429 3nvt_A 3-deoxy-D-arabino-heptu 33.9 2.9E+02 0.01 25.6 13.3 102 273-389 144-256 (385)
430 3lk7_A UDP-N-acetylmuramoylala 33.9 1.7E+02 0.0058 27.8 9.3 88 73-174 8-98 (451)
431 2wm3_A NMRA-like family domain 33.7 1.8E+02 0.0062 25.4 9.0 61 91-158 16-80 (299)
432 3sx2_A Putative 3-ketoacyl-(ac 33.7 2.3E+02 0.008 24.4 9.7 33 76-113 14-46 (278)
433 3icc_A Putative 3-oxoacyl-(acy 33.6 69 0.0023 27.5 6.0 36 74-114 6-41 (255)
434 3aek_B Light-independent proto 33.5 3.5E+02 0.012 26.4 11.6 74 308-386 153-232 (525)
435 1gsa_A Glutathione synthetase; 33.4 42 0.0014 30.0 4.6 37 75-113 2-41 (316)
436 3m9w_A D-xylose-binding peripl 33.4 2.5E+02 0.0084 24.6 21.0 218 74-349 2-224 (313)
437 3r1i_A Short-chain type dehydr 33.3 1.1E+02 0.0038 26.7 7.4 33 76-113 33-65 (276)
438 4hkt_A Inositol 2-dehydrogenas 33.3 1.3E+02 0.0043 27.2 7.9 74 73-163 2-76 (331)
439 2vns_A Metalloreductase steap3 33.2 61 0.0021 27.2 5.4 66 73-159 27-92 (215)
440 1sbz_A Probable aromatic acid 33.0 69 0.0024 26.7 5.4 36 75-113 1-37 (197)
441 3uve_A Carveol dehydrogenase ( 32.9 2.4E+02 0.0084 24.4 10.0 33 76-113 12-44 (286)
442 1bg6_A N-(1-D-carboxylethyl)-L 32.8 42 0.0014 30.7 4.6 34 72-112 2-35 (359)
443 4eg0_A D-alanine--D-alanine li 32.8 46 0.0016 30.0 4.8 40 73-112 12-53 (317)
444 3ezy_A Dehydrogenase; structur 32.6 1.3E+02 0.0046 27.2 8.0 67 306-386 24-92 (344)
445 2oqr_A Sensory transduction pr 32.6 1.5E+02 0.0052 24.6 8.0 110 309-433 5-121 (230)
446 1u0t_A Inorganic polyphosphate 32.6 50 0.0017 29.7 4.9 38 74-112 4-41 (307)
447 3uuw_A Putative oxidoreductase 32.5 84 0.0029 28.0 6.5 75 71-163 3-79 (308)
448 2e6c_A 5'-nucleotidase SURE; S 32.5 69 0.0024 27.7 5.5 38 75-116 1-38 (244)
449 1dih_A Dihydrodipicolinate red 32.5 46 0.0016 29.4 4.6 37 348-386 64-100 (273)
450 2iks_A DNA-binding transcripti 32.5 2.4E+02 0.0084 24.3 17.6 41 73-113 19-59 (293)
451 4id9_A Short-chain dehydrogena 32.5 44 0.0015 30.4 4.6 37 72-114 17-53 (347)
452 3sju_A Keto reductase; short-c 32.5 49 0.0017 29.1 4.8 37 71-112 20-56 (279)
453 1yio_A Response regulatory pro 32.4 2E+02 0.0068 23.3 12.7 110 309-433 5-122 (208)
454 1o0s_A NAD-ME, NAD-dependent m 32.3 3.8E+02 0.013 26.5 11.2 88 297-386 309-429 (605)
455 1lss_A TRK system potassium up 32.3 59 0.002 24.6 4.8 32 74-112 4-35 (140)
456 1vi6_A 30S ribosomal protein S 32.3 1.3E+02 0.0043 25.3 6.9 64 354-432 113-176 (208)
457 3rih_A Short chain dehydrogena 32.3 1.5E+02 0.0051 26.2 8.1 33 76-113 42-74 (293)
458 3qk7_A Transcriptional regulat 32.2 2.5E+02 0.0086 24.3 22.2 212 73-347 5-223 (294)
459 1rtt_A Conserved hypothetical 32.1 35 0.0012 28.1 3.5 40 73-113 5-45 (193)
460 2p2s_A Putative oxidoreductase 32.1 1.4E+02 0.0047 27.0 8.0 78 72-163 2-79 (336)
461 2ki0_A DS119; beta-alpha-beta, 32.0 8.7 0.0003 20.7 -0.2 32 308-345 4-35 (36)
462 1wcv_1 SOJ, segregation protei 31.9 37 0.0013 29.4 3.9 38 75-114 6-45 (257)
463 1zmt_A Haloalcohol dehalogenas 31.8 49 0.0017 28.6 4.6 22 92-113 13-34 (254)
464 3brs_A Periplasmic binding pro 31.8 2.5E+02 0.0084 24.1 16.8 52 284-347 173-224 (289)
465 2yv1_A Succinyl-COA ligase [AD 31.7 1.2E+02 0.0042 27.0 7.3 35 348-384 60-96 (294)
466 2x4g_A Nucleoside-diphosphate- 31.7 63 0.0022 29.1 5.6 36 74-115 13-48 (342)
467 1u9c_A APC35852; structural ge 31.6 91 0.0031 26.2 6.3 42 74-115 5-53 (224)
468 1j9j_A Stationary phase surviV 31.4 76 0.0026 27.5 5.6 38 75-116 1-38 (247)
469 3l9w_A Glutathione-regulated p 31.3 1.5E+02 0.005 28.0 8.1 61 90-159 13-77 (413)
470 1dz3_A Stage 0 sporulation pro 31.3 1.4E+02 0.0048 21.8 6.8 109 309-432 3-122 (130)
471 1z7e_A Protein aRNA; rossmann 31.3 1.1E+02 0.0039 30.8 7.9 77 75-158 1-83 (660)
472 3ohs_X Trans-1,2-dihydrobenzen 31.3 1.4E+02 0.0047 26.9 7.9 65 308-386 28-94 (334)
473 2wqk_A 5'-nucleotidase SURE; S 31.3 75 0.0026 27.6 5.6 39 74-116 1-39 (251)
474 1vlv_A Otcase, ornithine carba 31.1 2.6E+02 0.0088 25.3 9.3 87 259-364 157-244 (325)
475 3pxx_A Carveol dehydrogenase; 31.0 2.6E+02 0.0089 24.2 10.4 33 76-113 11-43 (287)
476 4ep1_A Otcase, ornithine carba 30.9 3.1E+02 0.011 25.0 10.1 85 259-364 169-255 (340)
477 2xxa_A Signal recognition part 30.9 2.6E+02 0.009 26.4 9.9 71 88-160 112-193 (433)
478 1dxh_A Ornithine carbamoyltran 30.8 1.8E+02 0.0061 26.5 8.2 78 269-364 154-232 (335)
479 2m1z_A LMO0427 protein; homolo 30.7 88 0.003 23.0 5.0 39 74-114 2-43 (106)
480 1h6d_A Precursor form of gluco 30.7 97 0.0033 29.4 6.9 82 67-162 76-162 (433)
481 1a04_A Nitrate/nitrite respons 30.5 2.2E+02 0.0075 23.2 8.6 109 308-432 5-124 (215)
482 2p2s_A Putative oxidoreductase 30.5 1.2E+02 0.0042 27.4 7.3 66 307-386 27-94 (336)
483 1ml4_A Aspartate transcarbamoy 30.2 1.7E+02 0.006 26.2 8.0 76 73-158 154-229 (308)
484 3ruf_A WBGU; rossmann fold, UD 30.2 53 0.0018 29.9 4.8 39 72-116 23-61 (351)
485 4iin_A 3-ketoacyl-acyl carrier 30.1 1.3E+02 0.0043 26.1 7.2 23 91-113 40-62 (271)
486 3end_A Light-independent proto 30.1 66 0.0022 28.7 5.3 40 74-114 40-79 (307)
487 1mvl_A PPC decarboxylase athal 30.1 78 0.0027 26.6 5.3 39 72-114 17-55 (209)
488 3cio_A ETK, tyrosine-protein k 30.0 64 0.0022 28.9 5.2 41 74-114 103-143 (299)
489 1toa_A Tromp-1, protein (perip 29.9 1.4E+02 0.0047 26.9 7.4 89 352-450 83-178 (313)
490 3gd5_A Otcase, ornithine carba 29.8 3.1E+02 0.011 24.7 10.1 86 259-364 147-233 (323)
491 4fu0_A D-alanine--D-alanine li 29.8 36 0.0012 31.5 3.5 41 72-112 1-43 (357)
492 3ucx_A Short chain dehydrogena 29.7 1E+02 0.0035 26.7 6.4 32 76-112 12-43 (264)
493 3ew7_A LMO0794 protein; Q8Y8U8 29.7 61 0.0021 26.9 4.8 23 91-113 11-33 (221)
494 2gas_A Isoflavone reductase; N 29.6 1.7E+02 0.0058 25.6 8.1 78 74-158 2-84 (307)
495 3iz6_A 40S ribosomal protein S 29.5 2.2E+02 0.0074 25.4 8.1 91 282-386 56-149 (305)
496 2v4n_A Multifunctional protein 29.5 88 0.003 27.2 5.7 38 75-116 2-39 (254)
497 3bch_A 40S ribosomal protein S 29.4 2.1E+02 0.007 24.8 7.8 124 282-432 85-212 (253)
498 1ny5_A Transcriptional regulat 29.3 3.4E+02 0.012 25.0 10.5 111 310-435 2-120 (387)
499 3vps_A TUNA, NAD-dependent epi 29.2 48 0.0017 29.5 4.3 36 73-114 6-41 (321)
500 1oi4_A Hypothetical protein YH 29.1 1.4E+02 0.0049 24.3 6.9 40 72-115 21-61 (193)
No 1
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.5e-46 Score=370.15 Aligned_cols=368 Identities=16% Similarity=0.103 Sum_probs=287.3
Q ss_pred CccEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh----------hhhhhhcCcEEEec
Q 011779 73 KSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----------EHKMWDRGVQVISA 139 (477)
Q Consensus 73 ~~~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----------~~~~~~~g~~v~~~ 139 (477)
++|||+++++.+.| ||.++++.+|+++|+++||+|+|+++..+.........+ .......|++++.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 46899999988655 999999999999999999999999966544321000000 00002356666554
Q ss_pred cc----------------hh----------hHHH-----hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecc
Q 011779 140 KG----------------QE----------TINT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (477)
Q Consensus 140 ~~----------------~~----------~~~~-----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 188 (477)
+. .. .+.+ ..+||+||+|+.........+.+. ...++++++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY----FKIPAVFTIHRLN 156 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH----HCCCEEEEESCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc----cCCCEEEEecccc
Confidence 32 10 1111 349999999986554322222211 2257889999875
Q ss_pred cccch------------------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhh
Q 011779 189 GHYFK------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250 (477)
Q Consensus 189 ~~~~~------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 250 (477)
..... ......+..++.+++.|....+... ..++.+..++.+||||+|.+.|.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~----~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 232 (439)
T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEW----GFFRNFEGKITYVFNGIDCSFWNESYLT 232 (439)
T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTH----HHHGGGTTSEEECCCCCCTTTSCGGGSC
T ss_pred cccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHh----hhhhhcCCceeecCCCCCchhcCccccc
Confidence 33111 1223344678888888888776622 2455778899999999999998776433
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCc--CceEEEEEecCCCcchHHHHH
Q 011779 251 VAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 251 ~~~~~~~~~~r~~~~~~~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~--~~~~l~ivG~g~~~~~~~~~~ 327 (477)
......+..+++++|++++ ++|+++||+. +.||++.+++|++.+.+ +. ++++|+|+|+|+. .+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~ 301 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGW 301 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHH
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHH
Confidence 3334457889999999888 9999999999 99999999999999876 44 8999999999842 34589
Q ss_pred HHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee
Q 011779 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV 405 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~ 405 (477)
+++++++++ +.+.|.|+. +++..+|+.||++|+||. .|+||++++|||++|+||| +++.||..|++.
T Consensus 302 l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi-------~s~~~~~~e~~~ 370 (439)
T 3fro_A 302 ARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI-------ASAVGGLRDIIT 370 (439)
T ss_dssp HHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEE-------EESSTHHHHHCC
T ss_pred HHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeE-------EcCCCCcceeEE
Confidence 999999988 788899954 779999999999999999 8999999999999999999 999999999998
Q ss_pred cCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 406 NGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 406 ~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++ +|++++++| +++++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++++..+
T Consensus 371 ~~-~g~~~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (439)
T 3fro_A 371 NE-TGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRAFD 436 (439)
T ss_dssp TT-TCEEECTTC--HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCBCS
T ss_pred cC-ceEEeCCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhhhh
Confidence 87 999999998 9999999999999 9999999999999999 6799999999999999998876543
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=5.1e-46 Score=369.84 Aligned_cols=363 Identities=18% Similarity=0.213 Sum_probs=279.3
Q ss_pred ccCCCccEEEEEeccCCC---------CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec
Q 011779 69 LSFMKSKLVLLVSHELSL---------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~---------gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 139 (477)
...+.||||+++++.+.| ||.++++.+++++|.++||+|+|++........ .......|++++.+
T Consensus 15 ~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~v~v~~~ 88 (438)
T 3c48_A 15 VPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQG------EIVRVAENLRVINI 88 (438)
T ss_dssp ----CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGC------SEEEEETTEEEEEE
T ss_pred ccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCc------ccccccCCeEEEEe
Confidence 345677899999987654 888999999999999999999999966432110 00001235555433
Q ss_pred cc--------------h----hhH----HHhc-CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----
Q 011779 140 KG--------------Q----ETI----NTAL-KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---- 192 (477)
Q Consensus 140 ~~--------------~----~~~----~~~~-~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---- 192 (477)
+. . +.+ .+.. +||+||+|..........+.+. ...++++++|+......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~ 164 (438)
T 3c48_A 89 AAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRD 164 (438)
T ss_dssp CCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC--
T ss_pred cCCCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCccccccccc
Confidence 21 0 011 1222 5999999974433222111111 12567888888632110
Q ss_pred ----------hhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 193 ----------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 193 ----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
.......++.++.+++.|....+.+.+ .+|++..++.+||||+|.+.|.+.... .++.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r~ 235 (438)
T 3c48_A 165 DSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMH----HYDADPDRISVVSPGADVELYSPGNDR-----ATERSRR 235 (438)
T ss_dssp --CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHH
T ss_pred ccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH----HhCCChhheEEecCCccccccCCcccc-----hhhhhHH
Confidence 011123456788888888887777654 567888899999999999887654221 1245888
Q ss_pred hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC--ceEEEEEec----CCCcchHHHHHHHHHHHhcC
Q 011779 263 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGS----DMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 263 ~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~ivG~----g~~~~~~~~~~l~~~~~~~~ 336 (477)
++++++++++|+++||+.+.||++.+++|+..+.+ ++| +++|+|+|+ | ++.+.+++++++++
T Consensus 236 ~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~p~~~~~l~i~G~~~~~g-----~~~~~l~~~~~~~~ 303 (438)
T 3c48_A 236 ELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD-------RDPDRNLRVIICGGPSGPN-----ATPDTYRHMAEELG 303 (438)
T ss_dssp HTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH-------HCTTCSEEEEEECCBC-----------CHHHHHHHHTT
T ss_pred hcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh-------hCCCcceEEEEEeCCCCCC-----cHHHHHHHHHHHcC
Confidence 99998899999999999999999999999999876 445 899999998 5 67889999999999
Q ss_pred CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
+.++|.|+|++ +++..+|+.||++|+||. .|+||++++|||++|+||| +++.||..|++.++.+|++++
T Consensus 304 l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI-------~~~~~~~~e~i~~~~~g~~~~ 374 (438)
T 3c48_A 304 VEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVI-------AARVGGLPIAVAEGETGLLVD 374 (438)
T ss_dssp CTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEE-------EESCTTHHHHSCBTTTEEEES
T ss_pred CCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEE-------ecCCCChhHHhhCCCcEEECC
Confidence 99999999997 789999999999999998 9999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++| +++++++|.++++|++.+++|++++++.+.+ |+|+.+++++.++|++++++...
T Consensus 375 ~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 375 GHS--PHAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp SCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhccc
Confidence 988 9999999999999999999999999999988 99999999999999999987654
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=9.3e-46 Score=362.61 Aligned_cols=355 Identities=20% Similarity=0.243 Sum_probs=285.3
Q ss_pred CCCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------
Q 011779 71 FMKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------- 141 (477)
+|++|||+++++.+++ ||+++++.++++.| +||+|+|++........ .......++.++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 72 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEA------HAYDKTLDYEVIRWPRSVMLPTP 72 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHH------HHHHTTCSSEEEEESSSSCCSCH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccch------hhhccccceEEEEccccccccch
Confidence 4678999999987764 89999999999999 69999999976543210 1112345677765433
Q ss_pred -----hhhHHHhcCCcEEEEcCcchhhHHHHHhh-hCCCccccceeeeeeeccccc-----chhhHhhcccccccceeee
Q 011779 142 -----QETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~-----~~~~~~~~~~~~~~~~~~s 210 (477)
...+.+..+||+||+|......++....+ .+. +++++++|+....+ ........++.++.+++.|
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 148 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGA----SKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYIS 148 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTC----SEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESC
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCC----CcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcC
Confidence 24555678999999998654443333322 222 45788888753222 1122344567888999999
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .++ ...++.+||||+|.+.|.+... ..+..++++++++++.++|+++||+.+.||++.+++
T Consensus 149 ~~~~~~~~~----~~~-~~~~~~vi~ngv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~ 218 (394)
T 3okp_A 149 QYTLRRFKS----AFG-SHPTFEHLPSGVDVKRFTPATP-----EDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIK 218 (394)
T ss_dssp HHHHHHHHH----HHC-SSSEEEECCCCBCTTTSCCCCH-----HHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHH
T ss_pred HHHHHHHHH----hcC-CCCCeEEecCCcCHHHcCCCCc-----hhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHH
Confidence 888877765 334 4478999999999998866221 125788999999999899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCC
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~ 368 (477)
|+.++.+ +.++++|+|+|+| ++.+.+++++ .++.++|+|+|++ +++..+|+.||++|+||. .
T Consensus 219 a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~ 282 (394)
T 3okp_A 219 AMPQVIA-------ARPDAQLLIVGSG-----RYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--T 282 (394)
T ss_dssp HHHHHHH-------HSTTCEEEEECCC-----TTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--C
T ss_pred HHHHHHh-------hCCCeEEEEEcCc-----hHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--c
Confidence 9999876 5689999999998 6788888888 5667899999998 899999999999999999 7
Q ss_pred -------CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 369 -------ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 369 -------E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|+||++++|||++|+||| +++.||..|++.++ +|++++++| +++++++|.++++|++.+++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI-------~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~ 352 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVI-------AGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMG 352 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEE-------ECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHcCCCEE-------EeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999999999 99999999999998 999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
+++++.+.++|||+.+++++.++|+++..+..
T Consensus 353 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 353 AAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999865443
No 4
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=4.3e-46 Score=376.41 Aligned_cols=370 Identities=15% Similarity=0.149 Sum_probs=280.9
Q ss_pred ccEEEEEeccCC-------------CCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh-hhHHhhhhhhhhhcCcEEEec
Q 011779 74 SKLVLLVSHELS-------------LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVISA 139 (477)
Q Consensus 74 ~~~Il~v~~~~~-------------~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~ 139 (477)
+|||+++++.+. .||+++++.+++++|.++||+|+|++....... ......+.......|++++.+
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 86 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRI 86 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEe
Confidence 489999998643 388899999999999999999999996543211 000000000001346666543
Q ss_pred cc---------------------hhhHHHh--cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----
Q 011779 140 KG---------------------QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---- 192 (477)
Q Consensus 140 ~~---------------------~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---- 192 (477)
+. ...+.+. .+||+||+|..........+.+. ...++++++|+......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~~ 162 (499)
T 2r60_A 87 PFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKLN 162 (499)
T ss_dssp CCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTTC
T ss_pred cCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhhc
Confidence 21 1122233 48999999975433322211111 12467889998532110
Q ss_pred ----------------h--hhHhhcccccccceeeehhhHHHHHHHhHhh--hc-c----CCCCeEEEecCCchhhhhhh
Q 011779 193 ----------------K--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEVA 247 (477)
Q Consensus 193 ----------------~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~-~----~~~~i~vi~ngvd~~~~~~~ 247 (477)
. ......++.++.+++.|....+.+.+ . +| + +..++.+||||+|.+.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~----~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~ 238 (499)
T 2r60_A 163 VNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYS----HDLYRGAVNVEDDDKFSVIPPGVNTRVFDGE 238 (499)
T ss_dssp CCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTT----SGGGTTTCCTTCGGGEEECCCCBCTTTSSSC
T ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHh----hhcccccccccCCCCeEEECCCcChhhcCcc
Confidence 0 01133456788888888877766543 4 56 5 66789999999999888664
Q ss_pred hhhHHHHHHHHHHHHhhC-----CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCc-
Q 011779 248 EDNVAKRVLREHVRESLG-----VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNA- 320 (477)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~-----~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~- 320 (477)
... ..+..+|+++| ++++.++|+++||+.+.||++.+++|+..+.+. .++ ++|+|+|++...
T Consensus 239 ~~~----~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~~~~~~l~i~G~~~~~~ 307 (499)
T 2r60_A 239 YGD----KIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKEL-------QDKANLVLTLRGIENPF 307 (499)
T ss_dssp CCH----HHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHH-------HHHCEEEEEESSCSBTT
T ss_pred chh----hhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHh-------CCCceEEEEECCCCCcc
Confidence 321 12467888888 778889999999999999999999999998652 233 689999982111
Q ss_pred ---------chHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCE
Q 011779 321 ---------QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 321 ---------~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (477)
+..|.++++++++++++.++|+|+|++ +++..+|+.| |++|+||. .|+||++++|||++|+||
T Consensus 308 ~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~Pv 385 (499)
T 2r60_A 308 EDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPA 385 (499)
T ss_dssp TBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCE
T ss_pred cccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCE
Confidence 112388999999999999999999996 8899999999 99999999 999999999999999999
Q ss_pred EeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
| +++.||..|++.++.+|++++++| +++++++|.++++|++.+++|++++++.+.++|||+.+++++.++|
T Consensus 386 I-------~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y 456 (499)
T 2r60_A 386 V-------VTRNGGPAEILDGGKYGVLVDPED--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456 (499)
T ss_dssp E-------EESSBHHHHHTGGGTSSEEECTTC--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred E-------EecCCCHHHHhcCCceEEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9 999999999999999999999998 9999999999999999999999999999988899999999999999
Q ss_pred HHHHhhhc
Q 011779 466 KEVLKKSK 473 (477)
Q Consensus 466 ~~~~~~~~ 473 (477)
++++++..
T Consensus 457 ~~~~~~~~ 464 (499)
T 2r60_A 457 QEIADRKD 464 (499)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhh
Confidence 99987654
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=4.8e-45 Score=360.31 Aligned_cols=358 Identities=18% Similarity=0.211 Sum_probs=271.6
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--h------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--Q------ 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--~------ 142 (477)
.|++|||+++++....||+++++.+++++|.++||+|++++.............+...+ .+...+.+.. .
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL--QGNESLKLTEEMKELYLNV 114 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHH--TTCCSCCCCHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceee--cccccccccHHHHHHHHHH
Confidence 46789999999987779999999999999999999999998654321111011111111 1221222211 1
Q ss_pred ----hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh---hHhhcccccccce-eeehhhH
Q 011779 143 ----ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKHLPLVAGAM-IDSHVTA 214 (477)
Q Consensus 143 ----~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~-~~s~~~~ 214 (477)
..+.+..+||+||+|++....+.. .... . .++++++|+........ ...+.+...+.++ +.+....
T Consensus 115 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~~-~~~~----~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~ 188 (416)
T 2x6q_A 115 NRENSKFIDLSSFDYVLVHDPQPAALIE-FYEK----K-SPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQ 188 (416)
T ss_dssp HHHHHHSSCGGGSSEEEEESSTTGGGGG-GSCC----C-SCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEeccchhhHHH-HHHh----c-CCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHH
Confidence 111234589999999865443321 1111 1 57888999764332211 1223344555544 4443322
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+ +++..++.+||||+|...+.+.+.+ ...+..+|+++++++++++|+++||+.+.||++.+++|+..
T Consensus 189 ~----------~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 255 (416)
T 2x6q_A 189 P----------ELDRNKAVIMPPSIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255 (416)
T ss_dssp T----------TSCTTTEEECCCCBCTTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHH
T ss_pred h----------hCCccceEEeCCCCChhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 2 2344789999999998766432211 12356789999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC-----CHHHHHHhcCEEEEcCCCCCC
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-----~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.+ +.|+++|+|+|+|+..+..+.+.++++++++++.++|+|+|+.. ++..+|+.||++|+||. .|
T Consensus 256 l~~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E 326 (416)
T 2x6q_A 256 VKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--RE 326 (416)
T ss_dssp HHH-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SC
T ss_pred HHH-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cC
Confidence 876 56899999999996444446788999999999999999999653 79999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
+||++++|||++|+||| +++.||+.|++.++.+|++++ | +++++++|.++++|++.+++|++++++.+.
T Consensus 327 ~~~~~~lEAma~G~PvI-------~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 395 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVI-------GRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVR 395 (416)
T ss_dssp SSCHHHHHHHHTTCCEE-------EESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCCEE-------EccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999998 6 999999999999999999999999999998
Q ss_pred HhcCHHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~~ 469 (477)
++|||+.+++++.++|++++
T Consensus 396 ~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 396 KNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHTBHHHHHHHHHHHHHTC-
T ss_pred HHcCHHHHHHHHHHHHHHhh
Confidence 89999999999999998765
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.8e-44 Score=353.53 Aligned_cols=341 Identities=20% Similarity=0.245 Sum_probs=267.2
Q ss_pred CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc------------------chhhHHH
Q 011779 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------------GQETINT 147 (477)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------------~~~~~~~ 147 (477)
.||+++++.+|+++|.++||+|++++...+.... ....++.+.... ....+.+
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 96 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN---------KVYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQ 96 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------CCCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc---------ccCCceEEEecccccccccccccccHHHHHHHHHHHH
Confidence 4899999999999999999999999975432100 011222222110 1134445
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------cchhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..+||+||+|+.....+...+.+.... ...++++++|+.... .+.......++.++.+++.|....+.+.+
T Consensus 97 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~-- 173 (394)
T 2jjm_A 97 RENLDILHVHYAIPHAICAYLAKQMIG-ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHE-- 173 (394)
T ss_dssp HHTCSEEEECSSTTHHHHHHHHHHHTT-TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHH--
T ss_pred HcCCCEEEEcchhHHHHHHHHHHHhhc-CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHH--
Confidence 689999999975433322222221111 125788899984321 12223344557788899999888877665
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
.++. ..++.+||||+|.+.|.+.. +..+++++++++++++|+++||+.+.||++.+++|+..+.+
T Consensus 174 --~~~~-~~~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~---- 238 (394)
T 2jjm_A 174 --LVKP-NKDIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVT---- 238 (394)
T ss_dssp --HTCC-SSCEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHH----
T ss_pred --hhCC-cccEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHh----
Confidence 3333 56899999999998876542 25577889998888999999999999999999999999865
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
+ ++++|+|+|+| +..++++++++++++.++|.|+|+.+++..+|+.||++|+||. .|+||++++|||++
T Consensus 239 ---~-~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~ 307 (394)
T 2jjm_A 239 ---E-VDAKLLLVGDG-----PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFGLVLLEAMAC 307 (394)
T ss_dssp ---S-SCCEEEEECCC-----TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHT
T ss_pred ---h-CCCEEEEECCc-----hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCchHHHHHHhc
Confidence 3 57999999998 5788899999999999999999999999999999999999999 99999999999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|+||| +++.||..|++.++.+|++++++| +++++++|.++++|++.+++|++++++.+.+.|||+.+++++
T Consensus 308 G~PvI-------~~~~~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 378 (394)
T 2jjm_A 308 GVPCI-------GTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQY 378 (394)
T ss_dssp TCCEE-------EECCTTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCEE-------EecCCChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999 999999999999999999999998 999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHhhhc
Q 011779 462 AVVLKEVLKKSK 473 (477)
Q Consensus 462 ~~~~~~~~~~~~ 473 (477)
.++|++++++.+
T Consensus 379 ~~~~~~~~~~~~ 390 (394)
T 2jjm_A 379 ETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHHhhhh
Confidence 999999987654
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1e-43 Score=357.94 Aligned_cols=370 Identities=16% Similarity=0.140 Sum_probs=272.7
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh-----h----hh--hh---hhhcCcEE
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-----S----LE--HK---MWDRGVQV 136 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~----~~--~~---~~~~g~~v 136 (477)
|||+++++.+.| ||+++++.+|+++|.++||+|+|++...+........ . .. .. ....|+++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 789999987643 8889999999999999999999999654211000000 0 00 00 01246666
Q ss_pred Eeccch--------------------------------hhHH----HhcCCcEEEEcCcchhhHHHHHhhhCCCccccce
Q 011779 137 ISAKGQ--------------------------------ETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (477)
Q Consensus 137 ~~~~~~--------------------------------~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (477)
+.+... ..+. +..+||+||+|+...+.. ....... .....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~-~~~~~p~ 158 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA-ETPEIPS 158 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS-SSCCCCE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc-ccCCCCE
Confidence 543210 0111 246899999998543332 2222221 1122578
Q ss_pred eeeeeeccccc-c----------h---------------hhHhhcccccccceeeehhhHHHHHHH-hH----hhhccCC
Q 011779 181 LWWIHEMRGHY-F----------K---------------LDYVKHLPLVAGAMIDSHVTAEYWKNR-TR----ERLRIKM 229 (477)
Q Consensus 181 i~~~h~~~~~~-~----------~---------------~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~----~~~~~~~ 229 (477)
++++|+..... . . ......+..++.+++.|....+.+.+. +. ..++.+.
T Consensus 159 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~ 238 (485)
T 1rzu_A 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRA 238 (485)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTG
T ss_pred EEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhc
Confidence 89999853210 0 0 112233466788888888877766542 00 0112456
Q ss_pred CCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCCC-CeEEEEEeecccCCCHHHHHHHHHHHHH
Q 011779 230 PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRNE-DLLFAIINSVSRGKGQDLFLHSFYESLE 297 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~~-~~~il~vGrl~~~Kg~~~ll~a~~~l~~ 297 (477)
.++.+||||+|.+.|.+.... ..+...+..+|+++|++++ .++|+++||+.++||++.+++|+..+.+
T Consensus 239 ~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 318 (485)
T 1rzu_A 239 HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS 318 (485)
T ss_dssp GGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH
T ss_pred CCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh
Confidence 789999999999888765321 1122235778999999875 6799999999999999999999999865
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
++++|+|+|+|+. ++.+.+++++++++ ++|+ |.|+..+ +..+|+.||++|+||. .|+||+++
T Consensus 319 ---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~~~~ 382 (485)
T 1rzu_A 319 ---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQ 382 (485)
T ss_dssp ---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHH
T ss_pred ---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHhcCCEEEECcc--cCCCCHHH
Confidence 6899999999841 36888999999885 6887 7898744 5899999999999999 99999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHHHH---hCHHHHHHHHHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKR 443 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~ 443 (477)
+|||++|+||| +++.||+.|++.++ .+|++++++| +++++++|.+++ +|++.+++|+++
T Consensus 383 lEAma~G~PvI-------~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~ 453 (485)
T 1rzu_A 383 LYALRYGCIPV-------VARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKL 453 (485)
T ss_dssp HHHHHHTCEEE-------EESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCCEE-------EeCCCChhheecccccccccccCCcceEeCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999 99999999999998 8999999998 999999999999 799999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 444 GYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
+++ +.|||+.+++++.++|++++.+...
T Consensus 454 ~~~---~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 454 GMK---SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp HHT---CCCBHHHHHHHHHHHHHHHTC----
T ss_pred HHH---HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 975 7899999999999999999876543
No 8
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=6e-44 Score=352.12 Aligned_cols=355 Identities=14% Similarity=0.126 Sum_probs=273.2
Q ss_pred cEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChh---hH--HhhhhhhhhhcCcEEEeccc--hhhHH
Q 011779 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEED---EV--IYSLEHKMWDRGVQVISAKG--QETIN 146 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~---~~--~~~~~~~~~~~g~~v~~~~~--~~~~~ 146 (477)
|||+++++.++. ||+++++..|+++|+++ |+|++++........ .. ........ ......+... .....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l 77 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV--RGLNEQGFYYSGLSEFI 77 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH--TTCCSTTCCHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc--cccccccchHHHHHHHH
Confidence 789999987665 88889999999999999 999999954432100 00 00000001 1111001111 23445
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccc--cceeeehhhHHHHHHHhHhh
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA--GAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~ 224 (477)
+..+||+||+|..............+++.. .+++...|......... ....+...+ .+++.|....+.+.+
T Consensus 78 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~S~~~~~~~~~----- 150 (413)
T 3oy2_A 78 DVHKPDIVMIYNDPIVIGNYLLAMGKCSHR-TKIVLYVDLVSKNIREN-LWWIFSHPKVVGVMAMSKCWISDICN----- 150 (413)
T ss_dssp HHHCCSEEEEEECHHHHHHHHHHGGGCCSC-CEEEEEECCCSBSCCGG-GGGGGGCTTEEEEEESSTHHHHHHHH-----
T ss_pred HhcCCCEEEEcchHHHHHHHHHHhccCCCC-CceeeeccccchhhHHH-HHHHHhccCCceEEEcCHHHHHHHHH-----
Confidence 667999999996443332222333344432 45566666554333322 355666756 899999888887764
Q ss_pred hccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++. ..++.+||||+|.+.| ...++++++++ +.++|+++||+.+.||++.+++|+.++.+
T Consensus 151 ~~~-~~~~~vi~ngvd~~~~-------------~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~----- 211 (413)
T 3oy2_A 151 YGC-KVPINIVSHFVDTKTI-------------YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS----- 211 (413)
T ss_dssp TTC-CSCEEECCCCCCCCCC-------------TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-----
T ss_pred cCC-CCceEEeCCCCCHHHH-------------HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-----
Confidence 455 5789999999999876 12456678877 88999999999999999999999999877
Q ss_pred ccCcCceEEEEEecCCCcc-hHHHHHHHHHHHhcCCCCc-------EEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 303 KLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDR-------VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~-~~~~~~l~~~~~~~~l~~~-------v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.|+++|+|+|+|+... ....+.++++++++++.++ |.|.|++ +++..+|+.||++|+||. .|+||
T Consensus 212 --~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~ 287 (413)
T 3oy2_A 212 --KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFG 287 (413)
T ss_dssp --HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSC
T ss_pred --hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCC
Confidence 66899999999985321 1145889999999999987 8888986 589999999999999999 99999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCc---------------ee--eecCCCCCHHHHHHHHHHHHhCHH
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTT---------------GL--LHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~---------------G~--l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
++++|||++|+||| +++.||..|++.++.+ |+ +++++| +++++++| ++++|++
T Consensus 288 ~~~lEAma~G~PvI-------~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 288 LCSAEGAVLGKPLI-------ISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp HHHHHHHTTTCCEE-------EECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHH
T ss_pred cHHHHHHHcCCCEE-------EcCCCChHHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHH
Confidence 99999999999999 9999999999998887 99 999998 99999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
.+++|++++++.+.++|||+.+++++.++|++++++.
T Consensus 358 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 358 NRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999889999999999999999998754
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=3.1e-43 Score=354.37 Aligned_cols=366 Identities=14% Similarity=0.106 Sum_probs=270.4
Q ss_pred cEEEEEeccCC----CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh--------hhh--hhh---hhcCcEEE
Q 011779 75 KLVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLE--HKM---WDRGVQVI 137 (477)
Q Consensus 75 ~~Il~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~--~~~---~~~g~~v~ 137 (477)
|||+++++.+. .||+++++.+|+++|+++||+|+|++...+........ .+. ..+ ...|++++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 78999998764 38889999999999999999999999654211000000 000 000 12466665
Q ss_pred eccc-----------------------------h---hhHHH----hcCCcEEEEcCcchhhHHHHHhhhCCCcccccee
Q 011779 138 SAKG-----------------------------Q---ETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL 181 (477)
Q Consensus 138 ~~~~-----------------------------~---~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i 181 (477)
.+.. . ..+.+ ..+||+||+|+...... ......+. ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~--~~~p~v 157 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAARG--RPAKSV 157 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHTT--CSSEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhcc--CCCCEE
Confidence 3311 0 01112 26899999998554332 22222111 235788
Q ss_pred eeeeeccccc-ch-------------------------hhHhhcccccccceeeehhhHHHHHHHhHhhhcc--------
Q 011779 182 WWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-------- 227 (477)
Q Consensus 182 ~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------- 227 (477)
+++|+..... .. ......+..++.+++.|....+.+.+. .+|.
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~ 234 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQ 234 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHh
Confidence 9999863211 00 111223456788888888877765432 1332
Q ss_pred CC--CCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHH
Q 011779 228 KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSF 292 (477)
Q Consensus 228 ~~--~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~ 292 (477)
+. .++.+||||+|.+.|.+.... ......+..+|+++|+++ +.++|+++||+.+.||++.+++|+
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 314 (485)
T 2qzs_A 235 RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL 314 (485)
T ss_dssp HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH
T ss_pred hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH
Confidence 22 689999999999888764321 112223578899999986 779999999999999999999999
Q ss_pred HHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccC-CHHHHHHhcCEEEEcCCCCCCc
Q 011779 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTL-TVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~-~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
+.+.+ ++++|+|+|+|+. ++.+.+++++++++ ++|. |.|+.. ++..+|+.||++|+||. .|+
T Consensus 315 ~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~ 378 (485)
T 2qzs_A 315 PGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEP 378 (485)
T ss_dssp HHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCS
T ss_pred HHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCC
Confidence 99865 6899999999842 37888999999886 6886 889864 45899999999999999 999
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHHHH---hCHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRL 438 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~ 438 (477)
||++++|||++|+||| +++.||+.|++.++ .+|++++++| +++++++|.+++ +|++.++
T Consensus 379 ~g~~~lEAma~G~PvI-------~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~ 449 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPL-------VRRTGGLADTVSDCSLENLADGVASGFVFEDSN--AWSLLRAIRRAFVLWSRPSLWR 449 (485)
T ss_dssp SCSHHHHHHHHTCEEE-------EESSHHHHHHCCBCCHHHHHTTCCCBEEECSSS--HHHHHHHHHHHHHHHTSHHHHH
T ss_pred CcHHHHHHHHCCCCEE-------ECCCCCccceeccCccccccccccceEEECCCC--HHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 99999999999998 8999999998 999999999999 7999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
+|++++++ ++|||+.++++|.++|++++.....
T Consensus 450 ~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~~~~~ 482 (485)
T 2qzs_A 450 FVQRQAMA---MDFSWQVAAKSYRELYYRLKLEHHH 482 (485)
T ss_dssp HHHHHHHH---CCCCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHh---hcCCHHHHHHHHHHHHHHhhhhhcc
Confidence 99999875 7899999999999999998765544
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1e-43 Score=345.60 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=267.6
Q ss_pred cEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
|||+++++.+.+ ||+++++.+++++|.++||+|++++....... ..|++++.++.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~ 68 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC------------PKAFELIQVPVKSHTNHGRNAEY 68 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC------------CTTCEEEECCCCCSSHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC------------CCCcEEEEEccCcccchhhHHHH
Confidence 689999987544 88899999999999999999999996532210 12455543321
Q ss_pred ---hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh-h-----Hhhcc--cccccceeee
Q 011779 142 ---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-----YVKHL--PLVAGAMIDS 210 (477)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-~-----~~~~~--~~~~~~~~~s 210 (477)
...+.+..+||+||+|+...+.... ..... ...+.+++.|......... . ....+ ..++.+++.|
T Consensus 69 ~~~l~~~i~~~~~Dvv~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 144 (374)
T 2iw1_A 69 YAWVQNHLKEHPADRVVGFNKMPGLDVY--FAADV--CYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT 144 (374)
T ss_dssp HHHHHHHHHHSCCSEEEESSCCTTCSEE--ECCSC--CHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCceee--ecccc--ccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcC
Confidence 1234456799999998743322100 00011 1122233334332111110 0 11111 2567788888
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .+|++..++.+||||+|.+.|.+.... ..+..+|+++|+++++++|+++||+.+.||++.+++
T Consensus 145 ~~~~~~~~~----~~~~~~~~~~vi~ngv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 145 DKQIADFQK----HYQTEPERFQILPPGIYPDRKYSEQIP----NSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHHHHHHHH----HHCCCGGGEEECCCCCCGGGSGGGSCT----THHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred HHHHHHHHH----HhCCChhheEEecCCcCHHhcCcccch----hHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 877776654 567888899999999999988765432 124678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
|+..+.+.. .++++|+++|+|. .++++++++++++.++|+|+|+.+++..+|+.||++|+||. .|+
T Consensus 217 a~~~l~~~~------~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~ 282 (374)
T 2iw1_A 217 ALASLPESL------RHNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEA 282 (374)
T ss_dssp HHHTSCHHH------HHTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCS
T ss_pred HHHHhHhcc------CCceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCC
Confidence 999885521 3689999999983 36788899999999999999999999999999999999999 899
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec-CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~-~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
||++++|||++|+||| +++.||..|++.++.+|++++ ++| +++++++|.++++|++.++++++++++.+.
T Consensus 283 ~~~~~~Ea~a~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVL-------TTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYAD 353 (374)
T ss_dssp SCHHHHHHHHHTCCEE-------EETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHCCCCEE-------EecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999998 778 999999999999999999999999999986
Q ss_pred HhcCHHHHHHHHHHHHHHHHh
Q 011779 450 EIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~~~ 470 (477)
.|+|+.+++++.++++..++
T Consensus 354 -~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 354 -TQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp -HSCCSCHHHHHHHHHHCC--
T ss_pred -HhhHHHHHHHHHHHHHHhhc
Confidence 57999999999999987553
No 11
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=1.5e-42 Score=349.41 Aligned_cols=368 Identities=18% Similarity=0.159 Sum_probs=259.5
Q ss_pred CccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh------hhh--------hhhhcCc
Q 011779 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS------LEH--------KMWDRGV 134 (477)
Q Consensus 73 ~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~------~~~--------~~~~~g~ 134 (477)
..|||||++.++.| ||...++..|.++|+++||+|.|+++..+......... +.. .....|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 56899999988665 88889999999999999999999997665432100000 000 0011233
Q ss_pred EEEeccc----------------------------hh------hHH---H-------------hcCCcEEEEcCcchhhH
Q 011779 135 QVISAKG----------------------------QE------TIN---T-------------ALKADLIVLNTAVAGKW 164 (477)
Q Consensus 135 ~v~~~~~----------------------------~~------~~~---~-------------~~~~DiV~~~~~~~~~~ 164 (477)
+++.+.. .+ ... . ..++||+|+|....+..
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 3321100 00 000 0 12467888997544433
Q ss_pred HHHHhhh---CCCccccceeeeeeecccccc-----------hh----------------------hHhhccccccccee
Q 011779 165 LDAVLKE---DVPRVLPNVLWWIHEMRGHYF-----------KL----------------------DYVKHLPLVAGAMI 208 (477)
Q Consensus 165 ~~~~~~~---~~~~~~~~~i~~~h~~~~~~~-----------~~----------------------~~~~~~~~~~~~~~ 208 (477)
...+... .-.....++++++|+...... .. ..+..+..++.+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 2222211 111123689999997531100 00 01122346778888
Q ss_pred eehhhHHHHHHHhHhh----hccCCCCeEEEecCCchhhhhhhhhh------------HHHHHHHHHHHHhhCCC--CCC
Q 011779 209 DSHVTAEYWKNRTRER----LRIKMPDTYVVHLGNSKELMEVAEDN------------VAKRVLREHVRESLGVR--NED 270 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~----~~~~~~~i~vi~ngvd~~~~~~~~~~------------~~~~~~~~~~r~~~~~~--~~~ 270 (477)
+|...++.+....... ......++.+|+||||.+.|.|..+. ..+...+..+++.+|++ ++.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 8888887765421100 11345689999999999998875321 23345567888888886 566
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--C
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--L 348 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~ 348 (477)
++|+++||+.++||++.+++|+.++.+ .+.+|+++|.|.. ++...++.....+ ++++.+.+.. +
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~ 393 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKY--PGKVRAVVKFNAP 393 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHS--TTTEEEECSCCHH
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhc--CCceEEEEeccHH
Confidence 899999999999999999999999855 6778999998842 4555666666655 4688888864 6
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCcee----------eecCCCC
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL----------LHPVGKE 418 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~----------l~~~~d~ 418 (477)
++..+|+.||++|+||. +|+||++++|||+||+||| ++++||++|+|.++.+|+ ++++.|
T Consensus 394 ~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI-------~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d- 463 (536)
T 3vue_A 394 LAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCA-------CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD- 463 (536)
T ss_dssp HHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEE-------ECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH-
T ss_pred HHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEE-------EcCCCCchheeeCCCCccccccCCCceeEECCCC-
Confidence 68889999999999999 9999999999999999999 999999999999999998 667777
Q ss_pred CHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 419 ~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+++|+++|.++++ +.+.+++|.+++. ++.|||++++++|+++|+++
T Consensus 464 -~~~la~ai~ral~~~~~~~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 464 -VKKVAATLKRAIKVVGTPAYEEMVRNCM---NQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp -HHHHHHHHHHHHHHTTSHHHHHHHHHHH---HSCCSSHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhcCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHh
Confidence 9999999998876 5555677776664 47899999999999999986
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.9e-41 Score=333.37 Aligned_cols=352 Identities=17% Similarity=0.145 Sum_probs=264.3
Q ss_pred CCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh---hhhhhc-CcEEEec-----c
Q 011779 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE---HKMWDR-GVQVISA-----K 140 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~~~~~~-g~~v~~~-----~ 140 (477)
.+||||+++++.+++ ||+++++.+++++|.++||+|++++............... ..+... ....... .
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHR 97 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHH
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHH
Confidence 456899999987644 8888999999999999999999999665432000000000 000000 0000011 1
Q ss_pred chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-h----hHhhcccccccceeeehhhHH
Q 011779 141 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-L----DYVKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~----~~~~~~~~~~~~~~~s~~~~~ 215 (477)
....+.+..+||+||++......+...+... ...++++++|+....... . .....++.++.+++.|....+
T Consensus 98 ~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 173 (406)
T 2gek_A 98 KVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARR 173 (406)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHH
Confidence 2334556679999999986544432222221 125788889985432211 1 111345678888888888877
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFLHSFYE 294 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~~ll~a~~~ 294 (477)
.+.+ .+ +..++ +||||+|.+.+.+.... .+++.++++|+++|++ .+.||++.+++|+.+
T Consensus 174 ~~~~----~~--~~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~ 233 (406)
T 2gek_A 174 WQME----AL--GSDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAVLLAALPK 233 (406)
T ss_dssp HHHH----HH--SSCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHHHHHHHHH
T ss_pred HHHH----hc--CCCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHHHHHHHHH
Confidence 7665 23 34578 99999999877654321 2233456899999999 999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ +.|+++|+|+|+| +. +.++++++++ .++|.|+|++ +++..+|+.||++|+||. +.|+||
T Consensus 234 l~~-------~~~~~~l~i~G~~-----~~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~-~~e~~~ 297 (406)
T 2gek_A 234 LVA-------RFPDVEILIVGRG-----DE-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHL-GGESFG 297 (406)
T ss_dssp HHT-------TSTTCEEEEESCS-----CH-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCC-SCCSSC
T ss_pred HHH-------HCCCeEEEEEcCC-----cH-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCC-CCCCCc
Confidence 876 6689999999998 45 7888888877 6799999997 567999999999999985 389999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|.++++|++.++++++++++.++ .|
T Consensus 298 ~~~~Ea~a~G~PvI-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 298 IVLVEAMAAGTAVV-------ASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp HHHHHHHHHTCEEE-------ECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred hHHHHHHHcCCCEE-------EecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 99999999999999 999999999999999999999988 999999999999999999999999999997 89
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 011779 453 QEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 453 s~~~~~~~~~~~~~~~~~~~~ 473 (477)
+|+.+++++.++|++++++..
T Consensus 368 s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 368 DWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp BHHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999986543
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.1e-41 Score=353.36 Aligned_cols=374 Identities=13% Similarity=0.156 Sum_probs=266.8
Q ss_pred CccEEEEEeccCC---------C--CchhhHHHH--------HHHHHHhCCcEEE----EEecCCCCChhhHHhhhhhhh
Q 011779 73 KSKLVLLVSHELS---------L--SGGPLLLME--------LAFLLRGVGTKVN----WITIQKPSEEDEVIYSLEHKM 129 (477)
Q Consensus 73 ~~~~Il~v~~~~~---------~--gG~~~~~~~--------l~~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~ 129 (477)
|.++|++++.... + ||...++.+ |+++|+++||+|+ |+|...+.........-....
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 4678999997653 3 555688874 7777788999876 998554332110000000111
Q ss_pred h-hcCcEEEeccch---------------------------hhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccc
Q 011779 130 W-DRGVQVISAKGQ---------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (477)
Q Consensus 130 ~-~~g~~v~~~~~~---------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (477)
. ..|+++++.+.. +.+.. ..+||+||+|....+.....+.+. ...|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~----~gvP 432 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK----LGVT 432 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH----HTCC
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH----cCCC
Confidence 1 236666443211 11111 237999999975444322222111 2257
Q ss_pred eeeeeeecccccch-------h---h---------HhhcccccccceeeehhhHHHHHHH---hHhh-------------
Q 011779 180 VLWWIHEMRGHYFK-------L---D---------YVKHLPLVAGAMIDSHVTAEYWKNR---TRER------------- 224 (477)
Q Consensus 180 ~i~~~h~~~~~~~~-------~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~------------- 224 (477)
++++.|........ . . ....+..++.+++.|....+.+.+. +...
T Consensus 433 ~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~ 512 (816)
T 3s28_A 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVH 512 (816)
T ss_dssp EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEE
T ss_pred EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccc
Confidence 78888875321110 0 0 1124567888888888777642211 1000
Q ss_pred -hccCCCCeEEEecCCchhhhhhhhhhHH-----HHH------HHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHHHH
Q 011779 225 -LRIKMPDTYVVHLGNSKELMEVAEDNVA-----KRV------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 225 -~~~~~~~i~vi~ngvd~~~~~~~~~~~~-----~~~------~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+...+++.+||||+|.+.|.+...... ... .....++.+|+ ++++++|+++||+.+.||++.+++
T Consensus 513 gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIe 592 (816)
T 3s28_A 513 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVE 592 (816)
T ss_dssp SCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHH
T ss_pred ccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHH
Confidence 0122348999999999998877542211 000 01123455666 678899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCC------cchHHHHHHHHHHHhcCCCCcEEEcccc------CCHHHHHH-hc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMN------AQTKFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AI 357 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~------~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~~~~~-~a 357 (477)
|+.++.+ ..++++|+|+|+|++ .+..+.+.++++++++++.++|.|+|++ +++..+|+ ++
T Consensus 593 A~~~L~~-------~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa 665 (816)
T 3s28_A 593 WYGKNTR-------LRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665 (816)
T ss_dssp HHHHCHH-------HHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcC
Confidence 9999865 447899999999951 1112788899999999999999999964 45788888 68
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH----hC
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----TH 433 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~ 433 (477)
|++|+||. .|+||++++||||||+||| +++.||+.|++.++.+|++++++| +++++++|.+++ .|
T Consensus 666 DvfV~PS~--~EgfglvllEAMA~G~PVI-------asd~GG~~EiV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d 734 (816)
T 3s28_A 666 GAFVQPAL--YEAFGLTVVEAMTCGLPTF-------ATCKGGPAEIIVHGKSGFHIDPYH--GDQAADTLADFFTKCKED 734 (816)
T ss_dssp CEEEECCS--CBSSCHHHHHHHHTTCCEE-------EESSBTHHHHCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCC--ccCccHHHHHHHHcCCCEE-------EeCCCChHHHHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccC
Confidence 99999999 9999999999999999999 999999999999999999999998 999999997776 89
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 434 VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
++.+++|++++++.+.++|||+.+++++.++|+..
T Consensus 735 ~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 735 PSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.7e-41 Score=323.58 Aligned_cols=310 Identities=16% Similarity=0.100 Sum_probs=248.1
Q ss_pred CCccEEEEEecc-----------CC---CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE
Q 011779 72 MKSKLVLLVSHE-----------LS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (477)
Q Consensus 72 ~~~~~Il~v~~~-----------~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 137 (477)
|++|||+++++. ++ .||+++++.+++++|.++||+|++++....... ..+++++
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~------------~~~~~~~ 68 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG------------RPGLTVV 68 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC------------STTEEEC
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC------------CCcceec
Confidence 667999999988 22 388889999999999999999999996654321 1244554
Q ss_pred eccc---hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhH
Q 011779 138 SAKG---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 138 ~~~~---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
+... ...+.+..+||+||+|+....... ... ...+ ++++|+..... ...+.+++.|....
T Consensus 69 ~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~-----~~~--~~~p-v~~~h~~~~~~---------~~~d~ii~~S~~~~ 131 (342)
T 2iuy_A 69 PAGEPEEIERWLRTADVDVVHDHSGGVIGPA-----GLP--PGTA-FISSHHFTTRP---------VNPVGCTYSSRAQR 131 (342)
T ss_dssp SCCSHHHHHHHHHHCCCSEEEECSSSSSCST-----TCC--TTCE-EEEEECSSSBC---------SCCTTEEESCHHHH
T ss_pred cCCcHHHHHHHHHhcCCCEEEECCchhhHHH-----Hhh--cCCC-EEEecCCCCCc---------ccceEEEEcCHHHH
Confidence 4332 345556679999999986544322 111 2256 88999875432 12788888888877
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+ ..++.+||||+|.+.|.+... . .+++.+|+++||+.+.||++.+++|++.
T Consensus 132 ~~~~~---------~~~~~vi~ngvd~~~~~~~~~---------------~-~~~~~~i~~vG~~~~~Kg~~~li~a~~~ 186 (342)
T 2iuy_A 132 AHCGG---------GDDAPVIPIPVDPARYRSAAD---------------Q-VAKEDFLLFMGRVSPHKGALEAAAFAHA 186 (342)
T ss_dssp HHTTC---------CTTSCBCCCCBCGGGSCCSTT---------------C-CCCCSCEEEESCCCGGGTHHHHHHHHHH
T ss_pred HHHhc---------CCceEEEcCCCChhhcCcccc---------------c-CCCCCEEEEEeccccccCHHHHHHHHHh
Confidence 76542 468999999999988765432 1 1345679999999999999999999987
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC--CHHHHHHhcCEEEEcCCC------
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQA------ 366 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~------ 366 (477)
+ +++|+|+|+| +..+.+++++++++ ++|+|+|+++ ++.++|+.||++|+||..
T Consensus 187 ~------------~~~l~i~G~g-----~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 187 C------------GRRLVLAGPA-----WEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp H------------TCCEEEESCC-----CCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred c------------CcEEEEEeCc-----ccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 5 5899999998 56788888888887 7999999974 569999999999999971
Q ss_pred --CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 367 --WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 367 --~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
|.|+||++++|||++|+||| +++.||..|++.+ +.+|+++++ | +++++++|.++++ ++
T Consensus 248 ~~~~E~~~~~~~EAma~G~PvI-------~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~--------~~ 309 (342)
T 2iuy_A 248 GIWCEPGATVVSEAAVSGTPVV-------GTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA--------SD 309 (342)
T ss_dssp SCCCCCCCHHHHHHHHTTCCEE-------ECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC--------HH
T ss_pred cccccCccHHHHHHHhcCCCEE-------EcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH--------HH
Confidence 26999999999999999999 9999999999999 899999999 8 9999999999986 67
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++.+.++|||+.+++++.++|++++++.
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 310 EVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 888888899999999999999999998754
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=2.5e-38 Score=309.66 Aligned_cols=339 Identities=12% Similarity=0.114 Sum_probs=227.5
Q ss_pred CCccEEEEEeccCCCC---chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhh----hh-hcC--cEEEeccc
Q 011779 72 MKSKLVLLVSHELSLS---GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK----MW-DRG--VQVISAKG 141 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~g---G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~----~~-~~g--~~v~~~~~ 141 (477)
..+|||+++++.+.|+ |+.+.+.+++++|.++||+|+|++........ ....+... +. ... ..+.....
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPK-DLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCHH-HHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCChH-HHHhhhccceeeccCCccccceeeeccc
Confidence 3568999999998885 77778999999999999999999976432111 10001000 00 000 11111110
Q ss_pred -hhhHHHhcCCcEEEEcCcchhhHHHHHhh-----hCCCccccceeeeeeecccccchhh-----Hhhcccccc--ccee
Q 011779 142 -QETINTALKADLIVLNTAVAGKWLDAVLK-----EDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVA--GAMI 208 (477)
Q Consensus 142 -~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~h~~~~~~~~~~-----~~~~~~~~~--~~~~ 208 (477)
........++|+||++............. .... ..+.++.+|+....+.... ....+...+ .+++
T Consensus 123 ~~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 200 (413)
T 2x0d_A 123 RYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIP--PNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVF 200 (413)
T ss_dssp CTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCC--CCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEE
T ss_pred cccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccc--cCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEE
Confidence 11111234799999987544333222210 0111 1245556666544322111 112233333 3566
Q ss_pred eehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHHH
Q 011779 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDL 287 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~~ 287 (477)
.|....+.+.+ .|++..++.+++||+|.+.|.+.. .+ .+++..++++||+ .+.||++.
T Consensus 201 ~S~~~~~~l~~-----~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~ 259 (413)
T 2x0d_A 201 NSELLKQYFNN-----KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTL 259 (413)
T ss_dssp ESHHHHHHHHH-----HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHH
T ss_pred cCHHHHHHHHH-----cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHH
Confidence 77777776654 355556799999999987654311 11 2345677889996 67899999
Q ss_pred HHHHHHHHHHHHHhhccCcC---ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 288 FLHSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~---~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+++|++.+.+ +.| +++|+++|+|... .++++.++|+|+|++ +++..+|+.||++|+
T Consensus 260 li~A~~~l~~-------~~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~ 320 (413)
T 2x0d_A 260 IVEALKIFVQ-------KYDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGIS 320 (413)
T ss_dssp HHHHHHHHHH-------HCTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHH-------hCCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEE
Confidence 9999999876 445 4899999998421 356777899999985 889999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
||. .|+||++++||||||+||| ++ .+|..|++.++.+|++++++| +++++++|.++++|++++++
T Consensus 321 pS~--~E~~g~~~lEAmA~G~PVV-------~~-~~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~--- 385 (413)
T 2x0d_A 321 LMI--SPHPSYPPLEMAHFGLRVI-------TN-KYENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV--- 385 (413)
T ss_dssp CCS--SSSCCSHHHHHHHTTCEEE-------EE-CBTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC-------
T ss_pred ecC--CCCCCcHHHHHHhCCCcEE-------Ee-CCCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---
Confidence 999 8999999999999999999 94 567789999999999999999 99999999999998888776
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++.+ +.|+|+.+.++ .++|+++++
T Consensus 386 ~~~~~~-~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 386 DKKESS-NMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp ---CCB-SCGGGCCCC----TTHHHHHT
T ss_pred hHHHHH-HhCCHHHHHHH-HHHHHHHHh
Confidence 566555 57999999888 777777764
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=3e-35 Score=301.90 Aligned_cols=336 Identities=13% Similarity=0.071 Sum_probs=246.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHH--HHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-----chh
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFL--LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQE 143 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-----~~~ 143 (477)
..++|||+++++.+.+||.++++.++++. +.+.||+|++++...+.... +...+...+ .+.... ...
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~ 275 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST-----LRTRLAQAS-TLHDVTALGHLATA 275 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCH-----HHHHHHHTS-EEEECTTCCHHHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccH-----HHHHHHhcC-eEEECCCCCHHHHH
Confidence 45678999999999889999999999999 78899999999965321111 122233333 333322 234
Q ss_pred hHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 144 TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.+.+..+||+||.+..... ..+.. ...+. .++..++|+...... .. ...+...+.+++.+.....
T Consensus 276 ~~i~~~~~Div~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~-~~-~~~~~~~d~~i~~s~~~~~------- 341 (568)
T 2vsy_A 276 KHIRHHGIDLLFDLRGWGGGGRPEV-FALRP----APVQVNWLAYPGTSG-AP-WMDYVLGDAFALPPALEPF------- 341 (568)
T ss_dssp HHHHHTTCSEEEECSSCTTCSSCHH-HHTCC----SSEEEEESSSSSCCC-CT-TCCEEEECTTTSCTTTGGG-------
T ss_pred HHHHhCCCCEEEECCCCCCcchHHH-HhcCC----CceeEeeecCCcccC-CC-CceEEEECCCcCCcccccC-------
Confidence 5557789999998653221 11111 11111 244445554321111 00 0111234555555544322
Q ss_pred hhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++ +++.+|||.+......+... +...|+++|++++.+++ ++||+.+ ||++.+++++.++.+
T Consensus 342 --~~---~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~----- 402 (568)
T 2vsy_A 342 --YS---EHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR----- 402 (568)
T ss_dssp --CS---SEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH-----
T ss_pred --Cc---ceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH-----
Confidence 22 67999999544321111000 12357788988776655 8999999 999999999999876
Q ss_pred ccCcCceEEEEEe-cCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 303 KLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 303 ~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
+.|+++|+|+| +| +..+.+++.++++|+. ++|+|+|++ +++..+|+.+|++|+||. + |||++++||
T Consensus 403 --~~~~~~l~i~G~~g-----~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEA 472 (568)
T 2vsy_A 403 --EVPDSVLWLLSGPG-----EADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDA 472 (568)
T ss_dssp --HCTTCEEEEECCST-----THHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHH
T ss_pred --hCCCcEEEEecCCH-----HHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHH
Confidence 56899999999 77 6889999999999998 999999998 489999999999999999 7 999999999
Q ss_pred HHcCCCEEeecccccc-------ccCC-------CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 379 MAFQLPVLLQKCLYQG-------TAAG-------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~-------~~~g-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
|++|+||| + ++.| |+.|++.+ | +++++++|.++++|++.+++|++++
T Consensus 473 ma~G~Pvv-------~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~ 533 (568)
T 2vsy_A 473 LWTGCPVL-------TTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARV 533 (568)
T ss_dssp HHTTCCEE-------BCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhCCCCEE-------eccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999 8 9999 99998844 5 8999999999999999999999999
Q ss_pred HHHH--HHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 445 YERV--KEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 445 ~~~~--~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++.+ .+.|+|+.++++++++|++++++...
T Consensus 534 ~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 534 DVLRRASGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9988 67899999999999999999876543
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=1.7e-33 Score=272.47 Aligned_cols=320 Identities=14% Similarity=0.063 Sum_probs=230.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------- 141 (477)
|||++++. ..||.+..+..|+++|.++||+|++++...+.. .......|++++.+..
T Consensus 7 mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T 1f0k_A 7 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 76 (364)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred cEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcch--------hhhccccCCceEEecCCccCcCccHHHHH
Confidence 89999984 346777889999999999999999999764321 1122334555543221
Q ss_pred -----------hhhHHHhcCCcEEEEcCcchhhHHH-HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 142 -----------QETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
...+.+..+||+||++......... .....+ .|++.+.|+..... ......+.++.+++.
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~~~~~---~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLG-----IPVVLHEQNGIAGL---TNKWLAKIATKVMQA 148 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTT-----CCEEEEECSSSCCH---HHHHHTTTCSEEEES
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcC-----CCEEEEecCCCCcH---HHHHHHHhCCEEEec
Confidence 1233455799999999754332221 122222 45666777642221 112223455666654
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecccCCCHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLF 288 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~~~Kg~~~l 288 (477)
+... ++ ++.+++||++.+.+.+.. .+++++++++.. ++++.|++.+.||.+.+
T Consensus 149 ~~~~-------------~~--~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~l 202 (364)
T 1f0k_A 149 FPGA-------------FP--NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTM 202 (364)
T ss_dssp STTS-------------SS--SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHH
T ss_pred Chhh-------------cC--CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHH
Confidence 4322 12 688999999988764421 134566666665 45556799999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceE-EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~ 367 (477)
++|+..+. .+++ ++++|+| + .+++++.+++++++ +|.|+|+++++..+|+.||++|+||.
T Consensus 203 i~a~~~l~----------~~~~~l~i~G~~-----~-~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg-- 263 (364)
T 1f0k_A 203 PQVAAKLG----------DSVTIWHQSGKG-----S-QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG-- 263 (364)
T ss_dssp HHHHHHHG----------GGEEEEEECCTT-----C-HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC--
T ss_pred HHHHHHhc----------CCcEEEEEcCCc-----h-HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc--
Confidence 99999873 1677 5678888 3 36788888888874 79999999999999999999999983
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCce--------EEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 439 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~ 439 (477)
|++++|||++|+||| +++.+|.. +++.++ .|++++++|.++++++++|.++ |++.+++
T Consensus 264 ----~~~~~EAma~G~Pvi-------~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~ 329 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPAL-------FVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLT 329 (364)
T ss_dssp ----HHHHHHHHHHTCCEE-------ECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHH
T ss_pred ----hHHHHHHHHhCCCEE-------EeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHH
Confidence 899999999999999 99998864 455455 5999998765589999999998 9999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 440 MGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 440 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++++++.+ +.|+|++++++++++|++.-.++
T Consensus 330 ~~~~~~~~~-~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 330 MAERARAAS-IPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp HHHHHHHTC-CTTHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhh-ccCHHHHHHHHHHHHHHHHHhhc
Confidence 999999877 57999999999999998765443
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.98 E-value=1.8e-32 Score=268.42 Aligned_cols=314 Identities=13% Similarity=0.132 Sum_probs=216.3
Q ss_pred CCccEEEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChh-hHHhh------hhhhhhhcCcEEEeccc--
Q 011779 72 MKSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-EVIYS------LEHKMWDRGVQVISAKG-- 141 (477)
Q Consensus 72 ~~~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~------~~~~~~~~g~~v~~~~~-- 141 (477)
.++|||+++++. +++ |.......+++.|.++| +|+|++........ ..... ........|++++....
T Consensus 12 ~~~MkIl~is~~~~p~-~~~~~~~~l~~~l~~~G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~ 89 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFRT-PRRANIHFITDQLALRG-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLWRTTV 89 (406)
T ss_dssp -CCSCEEEEESSCTTS-SSCCHHHHHHHHHHHHS-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEECCBSS
T ss_pred CCCceEEEEecccCCC-hhhhhHhHHHHHHHhCC-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEeecccc
Confidence 346899999987 664 32334456788888999 99999643211000 00000 00000124566543210
Q ss_pred ---------hh----------------hHHH-hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc-c----
Q 011779 142 ---------QE----------------TINT-ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H---- 190 (477)
Q Consensus 142 ---------~~----------------~~~~-~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-~---- 190 (477)
.+ .+.+ ..++|+||.+......+.......+ .+++.+.|+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~~~~~~~~-----~p~v~~~h~~~~~~~~~~ 164 (406)
T 2hy7_A 90 HPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRVN-----PAAKLVYRASDGLSTINV 164 (406)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGHHHHHHHC-----TTSEEEEEESSCHHHHTC
T ss_pred CCccccchhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHHHHHHHhC-----CCEEEEEeccchhhcccc
Confidence 00 0111 1379999966544433222222222 456677886432 1
Q ss_pred --cchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 011779 191 --YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (477)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (477)
.........++.++.+++.|....+.+.+ .+ ++.+||||+|.+.|.+.... ..+
T Consensus 165 ~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-----~~----~i~vipngvd~~~f~~~~~~---------------~~~ 220 (406)
T 2hy7_A 165 ASYIEREFDRVAPTLDVIALVSPAMAAEVVS-----RD----NVFHVGHGVDHNLDQLGDPS---------------PYA 220 (406)
T ss_dssp CHHHHHHHHHHGGGCSEEEESCGGGGGGCSC-----ST----TEEECCCCBCTTHHHHHCSC---------------SCC
T ss_pred cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----cC----CEEEEcCCcChHhcCccccc---------------ccC
Confidence 11122345567889999999888776543 12 79999999999887653211 012
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
++++|+++||+.+.||+ +..+.+ ..|+++|+|+|+| + ++++++.++|+|+|++
T Consensus 221 ~~~~i~~vGrl~~~Kg~------~~~l~~-------~~~~~~l~ivG~g-----~--------~~~~~l~~~V~f~G~~~ 274 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEF------FVVASK-------AFPQVTFHVIGSG-----M--------GRHPGYGDNVIVYGEMK 274 (406)
T ss_dssp SSEEEEEECCTTBCHHH------HHHHHH-------HCTTEEEEEESCS-----S--------CCCTTCCTTEEEECCCC
T ss_pred CCcEEEEEeccccccCH------HHHHHH-------hCCCeEEEEEeCc-----h--------HHhcCCCCCEEEcCCCC
Confidence 34899999999999998 333333 4489999999998 3 5677888999999997
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH-------HcCCCEEeeccccccccCCCceEEeecCCceee-ecCCCC
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-------AFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL-HPVGKE 418 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-------a~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l-~~~~d~ 418 (477)
+++..+|++||++|+||. .|+||++++||| |||+||| +|+. +.++.+|++ ++++|
T Consensus 275 ~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVI-------as~~------v~~~~~G~l~v~~~d- 338 (406)
T 2hy7_A 275 HAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAV-------CPNA------VVGPYKSRFGYTPGN- 338 (406)
T ss_dssp HHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEE-------EEGG------GTCSCSSEEEECTTC-
T ss_pred HHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEE-------Eehh------cccCcceEEEeCCCC-
Confidence 689999999999999999 999999999999 9999999 8887 667889999 99998
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV--LKEVL 469 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~--~~~~~ 469 (477)
+++++++|.++++|++ + ...+.|+|+.++++++++ |+++.
T Consensus 339 -~~~la~ai~~ll~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 339 -ADSVIAAITQALEAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp -HHHHHHHHHHHHHCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred -HHHHHHHHHHHHhCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 9999999999999876 1 234779999999999999 87653
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.98 E-value=7.6e-32 Score=262.91 Aligned_cols=347 Identities=11% Similarity=0.039 Sum_probs=231.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCc-EEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Ee--c-----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--A----------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~--~----------- 139 (477)
|||++++... .+ -..+..++++|.++|+ ++.++......... .......++.. ++ .
T Consensus 1 mkIl~v~~~~--~~-~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 1vgv_A 1 MKVLTVFGTR--PE-AIKMAPLVHALAKDPFFEAKVCVTAQHREML------DQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (384)
T ss_dssp CEEEEEECSH--HH-HHHHHHHHHHHHHSTTCEEEEEECCSSGGGG------HHHHHHHTCCCSEECCCCSTTSCHHHHH
T ss_pred CeEEEEeccc--HH-HHHHHHHHHHHHhCCCCceEEEEcCCCHHHH------HHHHHHcCCCCCcceecCCCCccHHHHH
Confidence 6899987543 11 2446789999999994 88776543221111 01111122211 11 1
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc----cchhhHh-hc-ccccccceee
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH----YFKLDYV-KH-LPLVAGAMID 209 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----~~~~~~~-~~-~~~~~~~~~~ 209 (477)
.....+.+..+||+||+|+.....+........ ...|++++.|+.... .+..... .. .+.++.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 148 (384)
T 1vgv_A 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY---QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSP 148 (384)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcC
Confidence 112344566899999999752222222211111 124566777765311 1111111 22 2457788888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhC-CCC-CCeEEEEEeecccC-CCH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVSRG-KGQ 285 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~il~vGrl~~~-Kg~ 285 (477)
+....+.+. .+|++.+++.+++||+ |...+.+.... .....+.++++++| +++ ++++++++||+.+. ||+
T Consensus 149 s~~~~~~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~ 222 (384)
T 1vgv_A 149 TETSRQNLL-----RENVADSRIFITGNTVIDALLWVRDQVM-SSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGF 222 (384)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTT-TCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHH
T ss_pred cHHHHHHHH-----HcCCChhhEEEeCChHHHHHHhhhhccc-cchhhhHHHHHhccccCCCCCEEEEEeCCccccchHH
Confidence 877776654 3577778899999995 33322211000 00011246778888 754 45788899999876 999
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+.+++|+.++.+ +.|+++|+++ |.++ .+.+.+++++.. .++|+|+|+. +++..+|+.||++|+
T Consensus 223 ~~li~a~~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~ 288 (384)
T 1vgv_A 223 EEICHALADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILT 288 (384)
T ss_dssp HHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 999999999876 5578999886 4441 256666666542 3689996643 789999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|| |.+++|||++|+||| +++. ||..|++.++ +|+++++ | +++++++|.++++|++.+++|+
T Consensus 289 ~S-------g~~~lEA~a~G~PvI-------~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~ 350 (384)
T 1vgv_A 289 DS-------GGIQEEAPSLGKPVL-------VMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMS 350 (384)
T ss_dssp SS-------STGGGTGGGGTCCEE-------EESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred CC-------cchHHHHHHcCCCEE-------EccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhh
Confidence 98 234899999999999 8886 8899999888 9999987 6 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++++. +.|+|+++++.+.++|+++.+..
T Consensus 351 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 351 RAHNPYG-DGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp SSCCTTC-CSCHHHHHHHHHHHTCCCC----
T ss_pred hccCCCc-CCCHHHHHHHHHHHHHHhhcccc
Confidence 9998765 67999999999999998876644
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.98 E-value=6.3e-32 Score=262.58 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=225.2
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhC-C-cEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-E--ec--c---
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-I--SA--K--- 140 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~--~~--~--- 140 (477)
++.+|||++++...+.. .....+++.|.++ | ++|.+++...+.... .......++.+ + .. .
T Consensus 5 m~~~mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 75 (375)
T 3beo_A 5 MTERLKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQML------DQVLSIFGITPDFDLNIMKDRQT 75 (375)
T ss_dssp CSSCEEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHH------HHHHHHHTCCCSEECCCCCTTCC
T ss_pred CCcCceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHH------HHHHHHcCCCCccccccCCCccc
Confidence 44568999998654222 2456888888876 4 888777654332111 01111112221 1 10 0
Q ss_pred ----------chhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccccc----chhh-Hhhcc-cc
Q 011779 141 ----------GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHY----FKLD-YVKHL-PL 202 (477)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~----~~~~-~~~~~-~~ 202 (477)
....+.+..+||+||+|+.....+.. .+...+ .|++++.|+..... +... ....+ +.
T Consensus 76 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~-----ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T 3beo_A 76 LIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQ-----IPVGHVEAGLRTWDKYSPYPEEMNRQLTGVM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTT-----CCEEEESCCCCCSCTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHC-----CCEEEEecccccccccCCChhHhhhhHHhhh
Confidence 12344566899999998753322221 112222 35555555442110 1111 11212 33
Q ss_pred cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC-CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc
Q 011779 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281 (477)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~ 281 (477)
++.+++.|....+.+. .+|++.+++.+++|| +|...+.+.... +.++++++ ++++++++++||+.+
T Consensus 151 ~d~ii~~s~~~~~~~~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~~ 217 (375)
T 3beo_A 151 ADLHFSPTAKSATNLQ-----KENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRREN 217 (375)
T ss_dssp CSEEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGGG
T ss_pred hheeeCCCHHHHHHHH-----HcCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEeccccc
Confidence 6778888877776654 347777889999999 787665432111 12344554 356678889999987
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcC
Q 011779 282 G-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (477)
Q Consensus 282 ~-Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aD 358 (477)
. ||++.+++|+.++.+ +.|++++++ |.|+. ..+.+.+++++ +..++|+|+|+. .++..+|+.||
T Consensus 218 ~~K~~~~li~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad 284 (375)
T 3beo_A 218 LGEPMRNMFRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSY 284 (375)
T ss_dssp TTHHHHHHHHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCc
Confidence 5 999999999999866 557888655 65531 12344444442 223689997764 58999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccccc-CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
++|+|| |.+++|||++|+||| +++ .||..|++.++ +|+++++ | +++++++|.++++|++.+
T Consensus 285 ~~v~~s-------g~~~lEA~a~G~Pvi-------~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~ 346 (375)
T 3beo_A 285 LMLTDS-------GGVQEEAPSLGVPVL-------VLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAH 346 (375)
T ss_dssp EEEECC-------HHHHHHHHHHTCCEE-------ECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHH
T ss_pred EEEECC-------CChHHHHHhcCCCEE-------EecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhH
Confidence 999987 567999999999999 886 48899998887 9999986 6 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++|+++++++. +.|+|+++++.+.++++
T Consensus 347 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 347 DKMSKASNPYG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHCCCCCTTC-CSCHHHHHHHHHHHHTT
T ss_pred hhhhhcCCCCC-CCcHHHHHHHHHHHHhh
Confidence 99999998876 67999999999888763
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.98 E-value=2e-30 Score=256.56 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=171.6
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
..++.+||||||.+.|.+......... .+.+|++++ ++++|+++||+.+.||++.+++|++++.+..++ -..+
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~---~~~~ 290 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQ---HHGK 290 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGG---GTTT
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCcc---ccCc
Confidence 357899999999998876432111111 456888886 578999999999999999999999999773221 0124
Q ss_pred eEEEEEecCCCcchH----HHHHHHHHHHhcC----CC--CcEEE-cccc--CCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 309 VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHF-VNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~--~~v~~-~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
++|+++|.+...+.+ +++++++++.+.+ .. ..|+| .|.+ +++..+|+.||+||+||. .||||+++
T Consensus 291 v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~ 368 (482)
T 1uqt_A 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVA 368 (482)
T ss_dssp EEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHH
T ss_pred EEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchH
Confidence 889999964322223 3455666655432 21 13665 5653 889999999999999999 99999999
Q ss_pred HHHHHcCC-----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Q 011779 376 IEAMAFQL-----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVK 449 (477)
Q Consensus 376 lEAma~G~-----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~ 449 (477)
+||||||+ ||| +++.+|..+.+ .+|++++|.| +++++++|.++++ +++.++++++++++.+.
T Consensus 369 lEAmA~g~~~~~gpvV-------~S~~~G~~~~l---~~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~ 436 (482)
T 1uqt_A 369 KEYVAAQDPANPGVLV-------LSQFAGAANEL---TSALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIV 436 (482)
T ss_dssp HHHHHHSCTTSCCEEE-------EETTBGGGGTC---TTSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCEE-------EECCCCCHHHh---CCeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999997 899 99988887777 2899999999 9999999999998 57789999999999985
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~ 468 (477)
+ |||+.+++++++.|+++
T Consensus 437 ~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 437 K-NDINHWQECFISDLKQI 454 (482)
T ss_dssp H-TCHHHHHHHHHHHHHHS
T ss_pred h-CCHHHHHHHHHHHHHhc
Confidence 5 99999999999999876
No 22
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=4.2e-30 Score=254.71 Aligned_cols=305 Identities=14% Similarity=0.107 Sum_probs=210.9
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecc--------ccc--ch------h--------------hHhh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--------GHY--FK------L--------------DYVK 198 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~--------~~~--~~------~--------------~~~~ 198 (477)
.+|||+|+|....+..+..+... .+ ..+.++++|... +.. +. . ..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~~--~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-RI--DVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-TC--SCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-CC--CCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 45999999987666554443322 32 268899999863 211 00 0 0112
Q ss_pred cccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhh-HHHHHHHHHH----HH----hhCCC-C
Q 011779 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-VAKRVLREHV----RE----SLGVR-N 268 (477)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~-~~~~~~~~~~----r~----~~~~~-~ 268 (477)
....++.++++|..++..+.. .++.+...+ ||||+|.+.|.+.... ..+...++.+ |. .++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 235788899999998887775 345455433 9999999998774221 1112223333 22 22555 3
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch-------------------------
Q 011779 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT------------------------- 322 (477)
Q Consensus 269 ~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~------------------------- 322 (477)
+.++|..+||+. .+||+|.+++|+.+|...++..+.+..-+.|+++..+.....
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 446666689999 689999999999999887765332345578888876532200
Q ss_pred -------------------H----------------------------------------HHHHHHHHHHhcCCCCc---
Q 011779 323 -------------------K----------------------------------------FESELRNYVMQKKIQDR--- 340 (477)
Q Consensus 323 -------------------~----------------------------------------~~~~l~~~~~~~~l~~~--- 340 (477)
| ..+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 0 11223334455666555
Q ss_pred ---EEEcc-cc--------CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-
Q 011779 341 ---VHFVN-KT--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG- 407 (477)
Q Consensus 341 ---v~~~g-~~--------~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~- 407 (477)
|+|.+ +. .++.++|+.||++|+||. +|+||++++||||||+||| +++.||+.|++.++
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI-------~s~~gG~~d~V~dg~ 561 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSI-------TTNVSGFGSYMEDLI 561 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEE-------EETTBHHHHHHHTTS
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEE-------EeCCCChhhhhhccc
Confidence 56665 32 368999999999999999 9999999999999999999 99999999998875
Q ss_pred ------CceeeecCC-CCCHHHHHHHHHHHH----h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 408 ------TTGLLHPVG-KEGITPLAKNIVKLA----T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 408 ------~~G~l~~~~-d~~~~~la~~i~~ll----~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
.+|+++++. +.++++++++|.+++ . ++..+..|++++++.+ +.|+|++++++|+++|++++.+.
T Consensus 562 ~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 562 ETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp CHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 369988542 122666665555555 3 7888999999998766 67999999999999999998654
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=1.1e-30 Score=230.60 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=165.2
Q ss_pred EecCCchhhhh--hhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHH--HHHHhhccCcCce
Q 011779 235 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 309 (477)
Q Consensus 235 i~ngvd~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~--~~~~~~~~~~~~~ 309 (477)
||||+|.+.|. +... .....+..+|+++|++++ .+|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~--~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCS--CHHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhcccccccc--chhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999987 6431 011224678999999755 4889999999 9999999999999985 4 55899
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE-ccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+|+|+|.+.+ .+.+.+++++++++ +|+| +|+++ ++..+|+.||++|+||. .|+||++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999821 27888999999886 8999 99985 89999999999999999 8999999999999999999
Q ss_pred eeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcC
Q 011779 387 LQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 453 (477)
+++.|+..+++ ++.+|++++++| +++++++|.++++ |++.+++|++++++.+++ ||
T Consensus 144 -------~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 -------ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp -------EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred -------EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 999999999988 9999999999999 999999999999999987 86
No 24
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.96 E-value=9.2e-29 Score=239.08 Aligned_cols=309 Identities=8% Similarity=0.028 Sum_probs=214.1
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcE--E-Eecc---chhhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISAK---GQETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~--v-~~~~---~~~~~~~~ 148 (477)
.+|++.+.+. |..+.+..|+++|.++| +|.+.+...... . ...... .++. + ++.. ..+++.+.
T Consensus 41 ~~iwih~~s~---G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~-~-----~~~~~~-~~v~~~~~~p~~~~~~l~~~l~~ 109 (374)
T 2xci_A 41 GALWVHTASI---GEFNTFLPILKELKREH-RILLTYFSPRAR-E-----YLKTKS-DFYDCLHPLPLDNPFSVKRFEEL 109 (374)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHHHHS-CEEEEESCGGGH-H-----HHHTTG-GGCSEEEECCCSSHHHHHHHHHH
T ss_pred CCEEEEcCCH---HHHHHHHHHHHHHHhcC-CEEEEEcCCcHH-H-----HHHHhc-ccccceeECCCCCHHHHHHHHHH
Confidence 3576666333 66788999999999998 887666432211 1 011111 2333 2 2221 23466677
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccC
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (477)
.+||+||++.......+..... . +++...+.... ...+...++.++.+++.|....+.+.+ +|++
T Consensus 110 ~~pDiv~~~~~~~~~~~~~~~~-~------p~~~~~~~~~~---~~~~~~~~~~~d~ii~~S~~~~~~l~~-----~g~~ 174 (374)
T 2xci_A 110 SKPKALIVVEREFWPSLIIFTK-V------PKILVNAYAKG---SLIEKILSKKFDLIIMRTQEDVEKFKT-----FGAK 174 (374)
T ss_dssp HCCSEEEEESCCCCHHHHHHCC-S------CEEEEEECCCC---CHHHHHHHTTCSEEEESCHHHHHHHHT-----TTCC
T ss_pred hCCCEEEEECccCcHHHHHHHh-C------CEEEEEeecCc---hHHHHHHHHhCCEEEECCHHHHHHHHH-----cCCC
Confidence 8999999864322111111111 1 23322222211 113344567788999999888877653 4665
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
++.+++|+. |.+...+ ++. + +.+++++.|+ ..||++.+++|++++.+ ++|+
T Consensus 175 --ki~vi~n~~----f~~~~~~----------~~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~ 225 (374)
T 2xci_A 175 --RVFSCGNLK----FICQKGK----------GIK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSS 225 (374)
T ss_dssp --SEEECCCGG----GCCCCCS----------CCC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTT
T ss_pred --eEEEcCCCc----cCCCcCh----------hhh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCC
Confidence 899999973 2111100 000 1 1245666664 46899999999999876 6789
Q ss_pred eEEEEEecCCCcchHHH-HHHHHHHHhcCCC--------CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH
Q 011779 309 VHAVIIGSDMNAQTKFE-SELRNYVMQKKIQ--------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~-~~l~~~~~~~~l~--------~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
++|+|+|+| +.+ ++++++++++++. ++|.+.|..+|+..+|+.||++++||.. .|++|++++|||
T Consensus 226 ~~lvivG~g-----~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAm 299 (374)
T 2xci_A 226 LKLILVPRH-----IENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPT 299 (374)
T ss_dssp CEEEEEESS-----GGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHH
T ss_pred cEEEEECCC-----HHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHH
Confidence 999999998 444 5889999998886 5789999889999999999998888752 578899999999
Q ss_pred HcCCCEEeeccccccc-cCCCceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Q 011779 380 AFQLPVLLQKCLYQGT-AAGGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 454 (477)
Q Consensus 380 a~G~PvI~~~~~~~~~-~~gg~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 454 (477)
|+|+||| ++ +.++.+|++.+. .+|++++++| +++|+++|.++++| +.+++|++++++.++++++.
T Consensus 300 A~G~PVI-------~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 300 CWGIPVI-------YGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp TTTCCEE-------ECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCEE-------ECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 9999999 75 778889988663 5789999988 99999999999999 99999999999999776554
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=8.5e-29 Score=211.51 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=140.2
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-- 347 (477)
+++|+++||+.+.||++.+++|+..+. +.++++|+|+|+| +..+.++++++++++ +|.| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKG-----PDEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCS-----TTHHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCC-----ccHHHHHHHHHHcCC--eEEE-eecCH
Confidence 578999999999999999999999873 3489999999998 578889999999987 8899 985
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeecccccc-ccCCCceEEeecCCceeeecCCCCCHHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 425 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~-~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~ 425 (477)
+++..+|+.||++|+||. .|+||++++|||++|+ ||| + ++.|+..+++.++ +.+++++| ++++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi-------~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~ 132 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVI-------ANSPLSATRQFALDE--RSLFEPNN--AKDLSA 132 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEE-------ECCTTCGGGGGCSSG--GGEECTTC--HHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEE-------eeCCCCchhhhccCC--ceEEcCCC--HHHHHH
Confidence 789999999999999999 9999999999999998 999 8 5688899999664 45888888 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 426 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 426 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
+|.++++|++.++++++++++.+ ++|||++++++
T Consensus 133 ~i~~l~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 133 KIDWWLENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred HHHHHHhCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 99999999999999999999988 78999998764
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=1.7e-27 Score=232.48 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=210.8
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-----c----hhhHhhcccccccceeeehhhHHHHHHH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----F----KLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
.-|+|.+|........ .+++...|. .++.+.+|...+.. . .....+.+-.+|.+...+...+..+.+.
T Consensus 149 ~~D~VwVhDYhL~llp-~~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP-ALLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHH-HHHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHH-HHHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 5789999986655433 334444443 47888888753321 1 1223344456677777776666665555
Q ss_pred hHhhh-ccCC-------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 221 TRERL-RIKM-------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 221 ~~~~~-~~~~-------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
....+ |.+. .++.++|+|||.+.|.+.... .++.+|++++ ++.+|+++||+.+.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 44444 3221 267899999999998765321 1256778887 578999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCc---eEEEEEecCCCcchH----HHHHHHHHHHhcC----CCCcEEEcccc--CCHHHH
Q 011779 287 LFLHSFYESLELIKEKKLEVPS---VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQDRVHFVNKT--LTVAPY 353 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~---~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~~~v~~~g~~--~~l~~~ 353 (477)
.+++|+ ++.+ ++|+ +.|+++|.....+.+ +++++++++.+.+ .. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~-------~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAA-------RGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHH-------HTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHH-------hCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 8877 4454 678888753322223 3455555555442 22 69999974 789999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcC---CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G---~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
|+.||++|+||. .||||++++|||||| .|+| .|+.+|..+.+ +.+|++++|.| ++++|++|.++
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lV-------lSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~a 435 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVI-------LSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAA 435 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEE-------EETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEE-------EeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHH
Confidence 999999999999 999999999999997 8999 99999988877 45799999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++ +++.++++.++.++++ ..++...+++.+++-++..-
T Consensus 436 L~m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 436 LAAGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHhhcc
Confidence 99 5678888899999988 56999999999998887763
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.95 E-value=8.6e-28 Score=233.49 Aligned_cols=330 Identities=13% Similarity=0.050 Sum_probs=213.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Eecc-----------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAK----------- 140 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~----------- 140 (477)
||||++++...+.. .....++++|.+. ||+|.+++..... .. ........++.. +...
T Consensus 5 mmkIl~v~~~~~~~---~~~~~l~~~L~~~~g~~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (376)
T 1v4v_A 5 MKRVVLAFGTRPEA---TKMAPVYLALRGIPGLKPLVLLTGQHR--EQ----LRQALSLFGIQEDRNLDVMQERQALPDL 75 (376)
T ss_dssp CEEEEEEECSHHHH---HHHHHHHHHHHTSTTEEEEEEECSSCH--HH----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred ceEEEEEEeccHHH---HHHHHHHHHHHhCCCCceEEEEcCCcH--HH----HHHHHHHcCCCcccccccCCCCccHHHH
Confidence 48999999654222 2356889999998 8998877643221 10 111112233322 1111
Q ss_pred ------chhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccccc----hh-hHhhc-ccccccc
Q 011779 141 ------GQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYF----KL-DYVKH-LPLVAGA 206 (477)
Q Consensus 141 ------~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~-~~~~~-~~~~~~~ 206 (477)
....+.+..+||+||+|......+. ..+...+ .|++...++...... .. ..... ....+.+
T Consensus 76 ~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~-----ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (376)
T 1v4v_A 76 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEG-----IPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLD 150 (376)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTT-----CCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhC-----CCEEEEeCCCccccccCCCchHHHHHHHHHHhcee
Confidence 1234456689999999875332222 1222222 344433332211110 01 11111 2345666
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~ 285 (477)
++.+....+.+. .+|++.+++.+++|++ |...+... +..++++++ +++++++++||+...||+
T Consensus 151 ~~~s~~~~~~l~-----~~g~~~~ki~vi~n~~~d~~~~~~~---------~~~~~~~~~--~~~~vl~~~gr~~~~k~~ 214 (376)
T 1v4v_A 151 FAPTPLAKANLL-----KEGKREEGILVTGQTGVDAVLLAAK---------LGRLPEGLP--EGPYVTVTMHRRENWPLL 214 (376)
T ss_dssp EESSHHHHHHHH-----TTTCCGGGEEECCCHHHHHHHHHHH---------HCCCCTTCC--SSCEEEECCCCGGGGGGH
T ss_pred eCCCHHHHHHHH-----HcCCCcceEEEECCchHHHHhhhhh---------hhHHHHhcC--CCCEEEEEeCcccchHHH
Confidence 777776666554 3477778899999975 32221110 112333343 456778889999888899
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+.+++|++++.+ ++|+++++++ |++. ..++.+++++.. .++|+|+|+. .++..+|+.||++|.
T Consensus 215 ~~ll~a~~~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~ 280 (376)
T 1v4v_A 215 SDLAQALKRVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVT 280 (376)
T ss_dssp HHHHHHHHHHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEE
Confidence 999999999866 5578898886 7651 256777776542 3689999542 389999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|| + |+ ++|||++|+||| ++ +.|+..+++.++ +|++++. | +++++++|.++++|++.+++|+
T Consensus 281 ~S----~--g~-~lEA~a~G~PvI-------~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~ 342 (376)
T 1v4v_A 281 DS----G--GL-QEEGAALGVPVV-------VLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMR 342 (376)
T ss_dssp SC----H--HH-HHHHHHTTCCEE-------ECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred CC----c--CH-HHHHHHcCCCEE-------eccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhc
Confidence 87 2 44 889999999999 76 568888877655 8999863 5 9999999999999999999998
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++ +.|.+...++++.+.+.+++.
T Consensus 343 ~~~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 343 KAK-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp HSC-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred ccC-----CCCCCChHHHHHHHHHHHHhc
Confidence 643 457777788888888888765
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.93 E-value=1e-26 Score=200.61 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=134.9
Q ss_pred hCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH--hcCCCCcE
Q 011779 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 341 (477)
Q Consensus 264 ~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~--~~~l~~~v 341 (477)
+.++.++++|+++|++.+.||++.+++++.++ ++++|+|+|.+. ..+.++++++ +++++++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~-----~~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFS-----KGDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCC-----TTSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCc-----cHHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999976 689999999984 4456778888 77888999
Q ss_pred EEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 342 ~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
.|+|++ +++..+|+.||++|+||. .|+||++++|||++|+||| +++.|+..|++.++.+|+++ ++|
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI-------~~~~~~~~e~i~~~~~g~~~-~~d-- 148 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVI-------AVNEGGFKETVINEKTGYLV-NAD-- 148 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEE-------EESSHHHHHHCCBTTTEEEE-CSC--
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEE-------EeCCCCHHHHhcCCCccEEe-CCC--
Confidence 999997 449999999999999999 9999999999999999999 99999999999999999999 777
Q ss_pred HHHHHHHHHHHHhCHHH-HHHHHHHH
Q 011779 420 ITPLAKNIVKLATHVER-RLTMGKRG 444 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~~-~~~~~~~a 444 (477)
+++++++|.++++|++. ++++++++
T Consensus 149 ~~~l~~~i~~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 149 VNEIIDAMKKVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999998875 44444433
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.89 E-value=6.3e-22 Score=192.44 Aligned_cols=337 Identities=13% Similarity=0.107 Sum_probs=208.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcE---EEec--------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ---VISA-------- 139 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~---v~~~-------- 139 (477)
|+||||++++..-+ |. ..+..+.++|+++ |+++.++....... . ....+...++. -+..
T Consensus 23 ~~m~ki~~v~Gtr~--~~-~~~a~li~~l~~~~~~~~~~~~tG~h~~--~----~~~~~~~~~i~~~~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 23 NAMKKVLIVFGTRP--EA-IKMAPLVQQLCQDNRFVAKVCVTGQHRE--M----LDQVLELFSITPDFDLNIMEPGQTLN 93 (396)
T ss_dssp -CCEEEEEEECSHH--HH-HHHHHHHHHHHHCTTEEEEEEECCSSSH--H----HHHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCCCeEEEEEeccH--hH-HHHHHHHHHHHhCCCCcEEEEEecccHH--H----HHHHHHhcCCCCceeeecCCCCCCHH
Confidence 56789999995432 22 4467899999887 78987555332211 0 11111222331 1111
Q ss_pred -------cchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccc----cchhhHhhc--ccccc
Q 011779 140 -------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGH----YFKLDYVKH--LPLVA 204 (477)
Q Consensus 140 -------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~----~~~~~~~~~--~~~~~ 204 (477)
.....+.+..+||+|+++......+. ..+...++ |++...++...+ .+.....+. .+..+
T Consensus 94 ~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~I-----Pv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~ 168 (396)
T 3dzc_A 94 GVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQI-----PVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQ 168 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTC-----CEEEETCCCCCSCTTSSTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCC-----CEEEEECCccccccccCCcHHHHHHHHHHhcC
Confidence 11135556789999999875443322 22233333 443322222111 111222222 23456
Q ss_pred cceeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhC-CCC-CCeEEEEEeecc-
Q 011779 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVS- 280 (477)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~il~vGrl~- 280 (477)
.+++.+....+.+. ..|++++++.+++|++ |...+.+.. .......++++++++| +++ +++++++.+|..
T Consensus 169 ~~~~~se~~~~~l~-----~~G~~~~ki~vvGn~~~d~~~~~~~~-~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~ 242 (396)
T 3dzc_A 169 YHFAPTDTSRANLL-----QENYNAENIFVTGNTVIDALLAVREK-IHTDMDLQATLESQFPMLDASKKLILVTGHRRES 242 (396)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHH-HHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCC
T ss_pred EEECCCHHHHHHHH-----HcCCCcCcEEEECCcHHHHHHHhhhh-cccchhhHHHHHHHhCccCCCCCEEEEEECCccc
Confidence 66677776666654 4588888999999865 322221111 0000111467889999 454 445555555643
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
..|+++.+++|+.++.+ ++|++++++. |.++ ..++.+++. .+..++|.++++. .++..+|+.|
T Consensus 243 ~~~~~~~ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~a 308 (396)
T 3dzc_A 243 FGGGFERICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRA 308 (396)
T ss_dssp CTTHHHHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhc
Confidence 35889999999999876 5688999885 5541 234445443 2344689998775 5788999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|.+|- |+. +|||++|+||| ++ +.++..|++.+| .+++++. | .+++++++.++++|++.
T Consensus 309 d~vv~~SG------g~~-~EA~a~G~PvV-------~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~ 370 (396)
T 3dzc_A 309 HIILTDSG------GIQ-EEAPSLGKPVL-------VMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQA 370 (396)
T ss_dssp SEEEESCS------GGG-TTGGGGTCCEE-------ECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHH
T ss_pred CEEEECCc------cHH-HHHHHcCCCEE-------EccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHH
Confidence 99998872 443 89999999999 77 778888888777 5677764 5 89999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++|++++.. |.....++++.+++
T Consensus 371 ~~~m~~~~~~-----~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 371 YQAMSQAHNP-----YGDGKACQRIADIL 394 (396)
T ss_dssp HHHHHTSCCT-----TCCSCHHHHHHHHH
T ss_pred HHHHhhccCC-----CcCChHHHHHHHHH
Confidence 9999886543 55555666665554
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.89 E-value=1.1e-21 Score=192.82 Aligned_cols=165 Identities=12% Similarity=0.096 Sum_probs=129.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++++++++.|++. .++.+.+.++++.+.+ .++++++++++.. ..+.++ +++++|.|.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~----~~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSL----DVSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSC----CCTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCC----Chhhhc------cCCCcEEEeCCC
Confidence 4567788889986 7888888888777643 3567777666532 111111 346799999998
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGITPL 423 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~~~l 423 (477)
++..+|+.||++|.++. +.+++|||++|+|+| +.+.+ +..+.+.+..+|+++++++.+++++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v-------~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l 366 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQL-------SFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSV 366 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEE-------ecCCchhHHHHHHHHHHcCCEEecCcccCCHHHH
Confidence 89999999999996653 579999999999999 65554 3677787888999999873349999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++|.++++|++.+++|++++++.. +.++++++++.+++++.+
T Consensus 367 ~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 367 SGAAKRLLAEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999998876 568999999999888754
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.89 E-value=1.9e-21 Score=187.18 Aligned_cols=327 Identities=14% Similarity=0.077 Sum_probs=194.7
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------- 141 (477)
|++||++.... +||. .-...++++|.++||+|.+++...+-. ...+...|+++..++.
T Consensus 1 M~~~i~i~~GG---TgGHi~palala~~L~~~g~~V~~vg~~~g~e--------~~~v~~~g~~~~~i~~~~~~~~~~~~ 69 (365)
T 3s2u_A 1 MKGNVLIMAGG---TGGHVFPALACAREFQARGYAVHWLGTPRGIE--------NDLVPKAGLPLHLIQVSGLRGKGLKS 69 (365)
T ss_dssp --CEEEEECCS---SHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH--------HHHTGGGTCCEEECC-----------
T ss_pred CCCcEEEEcCC---CHHHHHHHHHHHHHHHhCCCEEEEEECCchHh--------hchhhhcCCcEEEEECCCcCCCCHHH
Confidence 45688876532 1333 447889999999999999998654421 1112233443322110
Q ss_pred --------------hhhHHHhcCCcEEEEcCcchhh-HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccc
Q 011779 142 --------------QETINTALKADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (477)
Q Consensus 142 --------------~~~~~~~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (477)
...+.+..+||+|+++....+. ...++...++| ++ +|+..... ....+...++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP-----~v--ihe~n~~~-G~~nr~l~~~a~~v 141 (365)
T 3s2u_A 70 LVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVP-----LV--IHEQNAVA-GTANRSLAPIARRV 141 (365)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCC-----EE--EEECSSSC-CHHHHHHGGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCC-----EE--EEecchhh-hhHHHhhcccccee
Confidence 1244567899999998754433 22333444443 33 56543221 11111112333333
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGrl~~~Kg~ 285 (477)
+...... + ....++.++.|++..+.+... +.+.+++++++.+ ++.|++...+..
T Consensus 142 ~~~~~~~-----------~-~~~~k~~~~g~pvr~~~~~~~-------------~~~~~~~~~~~~ilv~gGs~g~~~~~ 196 (365)
T 3s2u_A 142 CEAFPDT-----------F-PASDKRLTTGNPVRGELFLDA-------------HARAPLTGRRVNLLVLGGSLGAEPLN 196 (365)
T ss_dssp EESSTTS-----------S-CC---CEECCCCCCGGGCCCT-------------TSSCCCTTSCCEEEECCTTTTCSHHH
T ss_pred eeccccc-----------c-cCcCcEEEECCCCchhhccch-------------hhhcccCCCCcEEEEECCcCCccccc
Confidence 3222111 1 134567888888887765332 1234455555544 445677777777
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
+.+.+++..+.. . .+++++ ++|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|..+
T Consensus 197 ~~~~~al~~l~~-------~-~~~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra 260 (365)
T 3s2u_A 197 KLLPEALAQVPL-------E-IRPAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA 260 (365)
T ss_dssp HHHHHHHHTSCT-------T-TCCEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC
T ss_pred hhhHHHHHhccc-------c-cceEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC
Confidence 777888776532 1 344444 44544 34556666666654 6788899999999999999999433
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccC--CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~--gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
.+.++.|+|++|+|+|..++++ +.+. -...+.+.+...|.+++..+.+++.|+++|.++++||+.+++|++
T Consensus 261 ------G~~Tv~E~~a~G~P~Ilip~p~-~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ------GALTVSELTAAGLPAFLVPLPH-AIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMAD 333 (365)
T ss_dssp ------CHHHHHHHHHHTCCEEECC------CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred ------CcchHHHHHHhCCCeEEeccCC-CCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3789999999999999554443 2211 012344556668899987776789999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
++++... ....+++++.++++.+.
T Consensus 334 ~a~~~~~-~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 334 QARSLAK-PEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHTCC-TTHHHHHHHHHHHHC--
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHcc
Confidence 9987553 34555566655555444
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.87 E-value=5.7e-21 Score=185.88 Aligned_cols=337 Identities=14% Similarity=0.127 Sum_probs=206.4
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE---Eec------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV---ISA------ 139 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~------ 139 (477)
.|+||||++++..-+ +. ..+..+.++|.+. |+++.++........ ....+...++.. +.+
T Consensus 24 ~m~~~kI~~v~Gtr~--~~-~~~a~li~~l~~~~~~~~~~~~~tG~h~~m------~~~~~~~~~i~~~~~l~v~~~~~~ 94 (403)
T 3ot5_A 24 AMAKIKVMSIFGTRP--EA-IKMAPLVLALEKEPETFESTVVITAQHREM------LDQVLEIFDIKPDIDLDIMKKGQT 94 (403)
T ss_dssp --CCEEEEEEECSHH--HH-HHHHHHHHHHHTCTTTEEEEEEECC-----------CHHHHHHTTCCCSEECCCCC-CCC
T ss_pred ccccceEEEEEecCh--hH-HHHHHHHHHHHhCCCCCcEEEEEecCcHHH------HHHHHHhcCCCCCcccccCCCCCC
Confidence 466789999995432 21 3457899999987 689875553321100 011112223210 111
Q ss_pred ---------cchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeeccc-cc---chhh-Hhhccc-c
Q 011779 140 ---------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRG-HY---FKLD-YVKHLP-L 202 (477)
Q Consensus 140 ---------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~-~~---~~~~-~~~~~~-~ 202 (477)
.....+.+..+||+|+++......+. ..+...++ |++....+... .. +... .+.... .
T Consensus 95 ~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~I-----Pv~h~~aglrs~~~~~~~p~~~~r~~~~~~ 169 (403)
T 3ot5_A 95 LAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQK-----MLGHVEAGLRTWNKYSPFPEEMNRQLTGVM 169 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTC-----EEEEESCCCCCSCTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCC-----CEEEEECCccccccccCCcHHHHHHHHHHh
Confidence 11135556789999999875333222 22233333 44322222111 11 1111 122222 3
Q ss_pred cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc
Q 011779 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281 (477)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~ 281 (477)
.+.+++.+....+.+. ..|++++++.++.|+. |...+.+.... +.+.++++ ++++++++++||...
T Consensus 170 a~~~~~~se~~~~~l~-----~~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~ 236 (403)
T 3ot5_A 170 ADIHFSPTKQAKENLL-----AEGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRREN 236 (403)
T ss_dssp CSEEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHH
T ss_pred cCEEECCCHHHHHHHH-----HcCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccc
Confidence 4555666666666655 4588888999998854 44333221100 12344455 455666777777644
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 282 -GKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 282 -~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
.|+++.+++|+.++.+ ++|++++++. |.++ ..++.+++. ++..++|.++++. .++..+|+.|
T Consensus 237 ~~~~l~~ll~a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~a 302 (403)
T 3ot5_A 237 LGEPMQGMFEAVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKS 302 (403)
T ss_dssp HTTHHHHHHHHHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHE
T ss_pred cCcHHHHHHHHHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhc
Confidence 5789999999999876 5688999887 4441 134444433 2344689999986 4899999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|.+| |.+.+|||++|+|+| +. +.++..|.+..| +|++++. | .+++++++.++++|++.
T Consensus 303 d~vv~~S-------Gg~~~EA~a~g~PvV-------~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~ 364 (403)
T 3ot5_A 303 YLVFTDS-------GGVQEEAPGMGVPVL-------VLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKES 364 (403)
T ss_dssp EEEEECC-------HHHHHHGGGTTCCEE-------ECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHH
T ss_pred CEEEECC-------ccHHHHHHHhCCCEE-------EecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHH
Confidence 9999776 234499999999999 77 678878887665 8888875 5 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
+++|++++.. |.....++++.+.+.+.+..
T Consensus 365 ~~~m~~~~~~-----~g~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 365 HDKMAQAANP-----YGDGFAANRILAAIKSHFEE 394 (403)
T ss_dssp HHHHHHSCCT-----TCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHhhcCc-----ccCCcHHHHHHHHHHHHhCC
Confidence 9999876543 55555666666666666553
No 33
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.85 E-value=2.5e-21 Score=189.27 Aligned_cols=162 Identities=11% Similarity=0.091 Sum_probs=109.5
Q ss_pred CCCeEEEEEeecccCC----------CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 268 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 268 ~~~~~il~vGrl~~~K----------g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
+++.+++++|++...| .++.+++++.+ .++++++++++ +..+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~-----~~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSD-----KLAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCC-----cchhhhc------cC
Confidence 4567888889997555 34555555443 35788888877 2333332 34
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
+++|.+.|+. ++..+|+.||++|. ++.+.+++|||++|+|+|+. |. ..+..+..+.+.+...|+++++++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~------~gG~~t~~Ea~~~G~P~v~~--p~-~~~q~~~a~~~~~~g~g~~~~~~~ 352 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVH------HGGHGTTLTCLSEGVPQVSV--PV-IAEVWDSARLLHAAGAGVEVPWEQ 352 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEEC--CC-SGGGHHHHHHHHHTTSEEECC---
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEe------cCCHHHHHHHHHhCCCEEec--CC-chhHHHHHHHHHHcCCEEecCccc
Confidence 6899999997 68999999999994 44478999999999999921 11 145556777788888999998874
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
.++++++++|.++++|++.+++|++.+++.. +..+++++++.+++
T Consensus 353 ~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 353 AGVESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp ----CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 3489999999999999999999999888765 66899988887653
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.85 E-value=5.5e-20 Score=181.71 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=122.3
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++.++++++|++. .++.+.+.+++..+. +.+++++ +++|++. ..+.++ .++++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~--------~~~~~~~~~~~G~~~-----~~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFG--------NLPGWHLVLQIGRKV-----TPAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHT--------TCTTEEEEEECC--------CGGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHh--------cCCCeEEEEEeCCCC-----ChHHhc------cCCCCeEEEec
Confidence 4557888899988 556555555554442 2246787 5778773 222221 24579999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+. ++|+.||++|..+. +++++|||++|+|+| +.+.++ ..+.+.+...|++++.++.++++
T Consensus 291 ~~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i-------~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 356 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHAG------AGGSQEGLATATPMI-------AVPQAVDQFGNADMLQGLGVARKLATEEATADL 356 (430)
T ss_dssp CCHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHH
T ss_pred CCHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEE-------ECCCccchHHHHHHHHHcCCEEEcCCCCCCHHH
Confidence 8777 89999999997553 479999999999999 766544 45666677789999877434899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++++|.++++|++.++++++.+++.. +.++++++++.+++++++..
T Consensus 357 l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 357 LRETALALVDDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhhccc
Confidence 99999999999999999999988766 45799999999988876553
No 35
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.83 E-value=4.1e-20 Score=174.41 Aligned_cols=288 Identities=11% Similarity=0.045 Sum_probs=189.9
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCC--CChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchh-h
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKP--SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG-K 163 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~-~ 163 (477)
.++.+.-.+..+-+.+.|++..-+..... .... .+...+. + .+....++|+|++++|... .
T Consensus 25 ~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~~----~~~~~~~--~----------~~~~~~~~DvIi~q~P~~~~~ 88 (339)
T 3rhz_A 25 STAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSES----ELSKRLD--G----------IVAGLRHGDVVIFQTPTWNTT 88 (339)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCHH----HHHHHHH--H----------HTTTCCTTCEEEEEECCSSCH
T ss_pred chHHHHHHHHHHHHHHCCCeEEEeeccccccccHH----HHHHHHH--H----------HHhcCCCCCEEEEeCCCcchh
Confidence 45556666777777889987655442211 1111 1111111 0 1223568999999987642 1
Q ss_pred -HHHHHhhhCCCccccceeeeeeecccccchh------hHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEe
Q 011779 164 -WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (477)
Q Consensus 164 -~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (477)
+....+.. ++....++++.+|+..+..+.. .....++.+|.+++.|....+.+.+ .|++..++.+++
T Consensus 89 ~~~~~~~~~-lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~-----~G~~~~ki~~~~ 162 (339)
T 3rhz_A 89 EFDEKLMNK-LKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD-----FGMNVSKTVVQG 162 (339)
T ss_dssp HHHHHHHHH-HTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH-----TTCCCSEEEECC
T ss_pred hHHHHHHHH-HHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH-----cCCCcCceeecC
Confidence 11112221 1112468899999976543221 2345678999999999998888764 477666665444
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEec
Q 011779 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (477)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~ 316 (477)
+. |... +.+ ...+.++++|+|+|+++....++. + .++++|+|+|+
T Consensus 163 ~~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~-------l----------~~~~~f~ivG~ 207 (339)
T 3rhz_A 163 MW-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKE-------W----------KYDIPLKVYTW 207 (339)
T ss_dssp SC-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGG-------C----------CCSSCEEEEES
T ss_pred CC-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHh-------C----------CCCCeEEEEeC
Confidence 32 2110 000 112245689999999985322211 1 17899999999
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC-----CCCcccHHHHHHHHcCCCEEeec
Q 011779 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-----WGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~-----~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
|+. + .++ ||+|+|++ +++..+|+.+|+.++.... ....+|.+++||||+|+|||
T Consensus 208 G~~-----~----------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI--- 268 (339)
T 3rhz_A 208 QNV-----E----------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVI--- 268 (339)
T ss_dssp CCC-----C----------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEE---
T ss_pred Ccc-----c----------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEE---
Confidence 942 1 244 99999986 8899999988988876220 01246899999999999999
Q ss_pred cccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
+++.++..+++.++.+|++++ + .++++++|..+ +++.+++|++++++.. +.++++.++++.
T Consensus 269 ----~~~~~~~~~~v~~~~~G~~~~--~--~~e~~~~i~~l--~~~~~~~m~~na~~~a-~~~~~~~f~k~~ 329 (339)
T 3rhz_A 269 ----VQEGIANQELIENNGLGWIVK--D--VEEAIMKVKNV--NEDEYIELVKNVRSFN-PILRKGFFTRRL 329 (339)
T ss_dssp ----EETTCTTTHHHHHHTCEEEES--S--HHHHHHHHHHC--CHHHHHHHHHHHHHHT-HHHHTTHHHHHH
T ss_pred ----EccChhHHHHHHhCCeEEEeC--C--HHHHHHHHHHh--CHHHHHHHHHHHHHHH-HHhhccHHHHHH
Confidence 999999999999999999987 4 88999999876 4677999999999876 447777766554
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.83 E-value=3.6e-20 Score=180.62 Aligned_cols=169 Identities=11% Similarity=0.095 Sum_probs=124.4
Q ss_pred CCCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+++.++++.|++...|+. ..+++++.+. + +.|+++++++|++. ..+.++ +++++|++.|+
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~ 277 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAES 277 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCS
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEecc
Confidence 345677778998765544 6667776665 5 56789999998872 222221 34679999998
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC--CCCCHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV--GKEGITPLA 424 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~--~d~~~~~la 424 (477)
. +...+++.||++|.. +.+.+++|||++|+|+|+. |. ..+..+..+.+.+...|.++++ .+.++++++
T Consensus 278 ~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~--p~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~ 347 (391)
T 3tsa_A 278 V-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVL--PQ-YFDQFDYARNLAAAGAGICLPDEQAQSDHEQFT 347 (391)
T ss_dssp C-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEEC--CC-STTHHHHHHHHHHTTSEEECCSHHHHTCHHHHH
T ss_pred C-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEec--CC-cccHHHHHHHHHHcCCEEecCcccccCCHHHHH
Confidence 6 456788999999943 4467999999999999921 10 1344456677778889999988 222399999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++.++++|++.+++|++.+++.. +..+++++++.++++..
T Consensus 348 ~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 348 DSIATVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 999999999999999998887765 66899998888876654
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.81 E-value=1e-18 Score=170.69 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=122.7
Q ss_pred CCCeEEEEEeecccC-CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+++.+++++|++... ++.+.+.++++.+.+ .+++++++|++.. .+.++ +++++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLD-----ISPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSC-----CGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcC-----hhhhc------cCCCcEEEEcc
Confidence 455788888998665 466666666665543 4688999888732 11111 35689999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce--EEeecCCceeeecCCCCCHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT--EIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~--e~v~~~~~G~l~~~~d~~~~~la 424 (477)
. ++..+|+.||++|.. +.+.+++|||++|+|+|+. |. ..+..+.. +.+.+...|+++++++.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~--p~-~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~ 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLA--PD-PRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR 360 (398)
T ss_dssp C-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEEC--CC-TTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH
T ss_pred C-CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEc--CC-CchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH
Confidence 8 899999999999943 4467999999999999932 11 25667788 88888889999987754466665
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++++|++.+++|++.+++.. +..+++.+++.+++++
T Consensus 361 ----~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 ----RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred ----HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 78899999999988888755 6689999998887765
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.81 E-value=1.1e-18 Score=170.76 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=119.3
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+.+.++++.|+....+ .+.+..+++.+. + .++++++ +|++.. .+.++ .++++|.+.|+
T Consensus 230 ~~~~v~v~~G~~~~~~-~~~~~~~~~~~~--------~-~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEH-PEFFRACAQAFA--------D-TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCC-HHHHHHHHHHHT--------T-SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHHHHh--------c-CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 4567788889887654 233333333331 1 2356655 565421 11111 24679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
.++. ++|+.||++|..+- ..+++|||++|+|+|+.+.+ ..+..+..+.+.+...|..++.++.++++++++
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~--~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~ 359 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHF--ATEAAPSAERVIELGLGSVLRPDQLEPASIREA 359 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGG--CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCC--cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHH
Confidence 8777 99999999996653 47889999999999943221 223345667777888999998874449999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+.++++|++.++++++.+++.. +..+++++++.+++++.+
T Consensus 360 ~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 360 VERLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 9999999999999988877654 567888888888887754
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.76 E-value=2.4e-17 Score=161.91 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=116.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+.+.++++.|+.....+ +.+..+++.+. +.+ +++++ +|.+.. .+.++ .++++|.+.++
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~--------~~~-~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFD--------GQP-WHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHT--------TSS-CEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHh--------cCC-cEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 45677788888764432 23322222221 224 77776 565421 11121 34679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
..+. .+|+.||++|..+- ..+++|||++|+|+|+.+ . ..+.....+.+.+...|..++.++.++++++++
T Consensus 305 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p--~-~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~ 374 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHGG------MGTLMEALYWGRPLVVVP--Q-SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAA 374 (415)
T ss_dssp CCHH-HHHHHEEEEEESCC------HHHHHHHHHTTCCEEECC--C-SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCc------HHHHHHHHHhCCCEEEeC--C-cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHH
Confidence 8666 89999999996553 468999999999999321 1 134444566777777898888764449999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+.++++|++.++++.+.+++.. +..+.+++++.+++++.+
T Consensus 375 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 375 VGAVAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhc
Confidence 9999999999999988777655 557888888888777653
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.73 E-value=4e-16 Score=151.58 Aligned_cols=159 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
+...+++++|++... +.++.+++++.+ .++++++++++ +..+.++. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~-----~~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPD-----TVAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCH-----HHHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCC-----CCHHhhCC------CCCc
Confidence 346788889998875 556667776653 35788887654 33333332 3468
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCC
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~ 416 (477)
|.+ |+. +..++|+.||++|..+- +.+++|||++|+|+| +.+.++ ..+.+.+...|+.+++.
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~G------~~t~~Ea~~~G~P~v-------~~p~~~dq~~~a~~~~~~g~g~~~~~~ 330 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHAG------GVSTLTGLSAGVPQL-------LIPKGSVLEAPARRVADYGAAIALLPG 330 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECSC------TTHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHHTSEEECCTT
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCCc------HHHHHHHHHhCCCEE-------EccCcccchHHHHHHHHCCCeEecCcC
Confidence 999 987 57889999999996543 578999999999999 665533 56666676789998876
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+.+.++++++|.++++|++.++++++.+++.. ..-..+++++.++++.
T Consensus 331 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 331 EDSTEAIADSCQELQAKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 44489999999999999999999988877655 4446666666555443
No 41
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.64 E-value=2e-14 Score=142.54 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=131.2
Q ss_pred HHhhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE--EEecCCCcchHHHHHHHHHHHhcC
Q 011779 261 RESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 261 r~~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~--ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
|..++++.+ .+++++.++. .|..+.+++++.++.+ +.|+..++ ++|.+. .....+.+.+.+.|
T Consensus 430 r~~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~-------~vP~s~L~l~~~g~~~----g~~~~~~~~~~~~G 496 (631)
T 3q3e_A 430 KVDYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRD-------RAKVKVHFHFALGQSN----GITHPYVERFIKSY 496 (631)
T ss_dssp SCCCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHH-------HCSSEEEEEEEESSCC----GGGHHHHHHHHHHH
T ss_pred cccccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEEecCCCc----hhhHHHHHHHHHcC
Confidence 345677765 6788888874 6999999999999987 66887664 356432 12233334456678
Q ss_pred CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee------cCC
Q 011779 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV------NGT 408 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~------~~~ 408 (477)
+.+++.|.|.. .+....|+.+|+++.|+. + +.|++.+|||++|+||| +...++...-+. -|-
T Consensus 497 I~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVV-------Tl~G~~~asRvgaSlL~~~GL 566 (631)
T 3q3e_A 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGV-------CKTGAEVHEHIDEGLFKRLGL 566 (631)
T ss_dssp HGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEE-------EECCSSHHHHHHHHHHHHTTC
T ss_pred CCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEE-------eccCCcHHHHhHHHHHHhcCC
Confidence 88899999986 566788999999999985 4 55999999999999999 654444333221 133
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhh
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~~ 471 (477)
.++++.. | .+++++...++..|++.+++++++.++.... .|+ ...+++++.|++++++
T Consensus 567 pE~LIA~-d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 567 PEWLIAN-T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNA 626 (631)
T ss_dssp CGGGEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHH
T ss_pred CcceecC-C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHH
Confidence 3432322 3 8999999999999999999999999887644 444 5556666666666543
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.64 E-value=4.5e-16 Score=149.97 Aligned_cols=333 Identities=10% Similarity=0.051 Sum_probs=192.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhh-hhhcCcE-E-Eec----------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDRGVQ-V-ISA---------- 139 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-~~~~g~~-v-~~~---------- 139 (477)
.|.|+++++..-+-- .-+..+.++|.+. +++.++..... .+. .+.+. ....++. . +.+
T Consensus 8 ~~~~~~~v~GtRpe~---~k~~p~~~~l~~~-~~~~~~~tgqh--~~~---~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 78 (385)
T 4hwg_A 8 HMLKVMTIVGTRPEL---IKLCCVISEFDKH-TKHILVHTGQN--YAY---ELNQVFFDDMGIRKPDYFLEVAADNTAKS 78 (385)
T ss_dssp CCCEEEEEECSHHHH---HHHHHHHHHHHHH-SEEEEEECSCH--HHH---HHTHHHHC-CCCCCCSEECCCCCCCSHHH
T ss_pred hhhheeEEEEcCHhH---HHHHHHHHHHHhc-CCEEEEEeCCC--CCh---hHHHHHHhhCCCCCCceecCCCCCCHHHH
Confidence 356788887322100 3467788888876 88776653321 110 11111 1222321 0 111
Q ss_pred -----cchhhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccc--cchhhH-hhcc-cccccceee
Q 011779 140 -----KGQETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGH--YFKLDY-VKHL-PLVAGAMID 209 (477)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~--~~~~~~-~~~~-~~~~~~~~~ 209 (477)
.....+.+..+||+|+++......+ ...+...++ |++....+.... .+.... +... +..+.+++.
T Consensus 79 ~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~I-----Pv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~ 153 (385)
T 4hwg_A 79 IGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKI-----PIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITL 153 (385)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTC-----CEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCC-----CEEEEeCCCccccccCcHHHHHHHHHhhhceeecC
Confidence 1124566778999999987432222 233344444 333222222111 111111 1222 233445666
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc---cCCCH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQ 285 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~---~~Kg~ 285 (477)
+....+.+. ..|++++++.++.|++ |.-.+... ...+.++++++|++++++++++.||.. ..|++
T Consensus 154 te~~~~~l~-----~~G~~~~~I~vtGnp~~D~~~~~~~------~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l 222 (385)
T 4hwg_A 154 TEHARRYLI-----AEGLPAELTFKSGSHMPEVLDRFMP------KILKSDILDKLSLTPKQYFLISSHREENVDVKNNL 222 (385)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCSHHHHHHHHHH------HHHHCCHHHHTTCCTTSEEEEEECCC-----CHHH
T ss_pred CHHHHHHHH-----HcCCCcCcEEEECCchHHHHHHhhh------hcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHH
Confidence 666666554 4588888999998864 32221111 112467888999987777777777743 34788
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc-C-C--CCcEEEcccc--CCHHHHHHhcCE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K-I--QDRVHFVNKT--LTVAPYLAAIDV 359 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~-l--~~~v~~~g~~--~~l~~~~~~aDv 359 (477)
+.+++|+.++.+ ++ ++.+++.... . +++.+++. + + .++|.+.+.. .++..+|+.||+
T Consensus 223 ~~ll~al~~l~~-------~~-~~~vv~p~~p-----~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl 285 (385)
T 4hwg_A 223 KELLNSLQMLIK-------EY-NFLIIFSTHP-----R----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC 285 (385)
T ss_dssp HHHHHHHHHHHH-------HH-CCEEEEEECH-----H----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHh-------cC-CeEEEEECCh-----H----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE
Confidence 999999998865 23 6777665431 2 34444443 3 2 3689998764 468899999999
Q ss_pred EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 360 LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
++.+| |.+..||+++|+||| +.+.. +..|.+..| ++.++.. | .+++++++.++++|++.++
T Consensus 286 vvt~S-------Ggv~~EA~alG~Pvv-------~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~ 347 (385)
T 4hwg_A 286 ILSDS-------GTITEEASILNLPAL-------NIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNK 347 (385)
T ss_dssp EEECC-------TTHHHHHHHTTCCEE-------ECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTB
T ss_pred EEECC-------ccHHHHHHHcCCCEE-------EcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHH
Confidence 99665 346799999999999 55443 345666555 6677654 5 8999999999999988777
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.|++++..+..+..+.+++++.+.+++
T Consensus 348 ~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 348 RTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp CCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 776655442012234444554444443
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.63 E-value=3.5e-15 Score=147.60 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=117.5
Q ss_pred CCCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE
Q 011779 268 NEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~ 342 (477)
+...++++.|++... |.++.+++++.+ .++++++++++. ..+.++ +++++|.
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~-----~~~~l~------~~~~~v~ 322 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQ-----QLEGVA------NIPDNVR 322 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTT-----TTSSCS------SCCSSEE
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCc-----chhhhc------cCCCCEE
Confidence 345688889998754 788888888764 257888877652 111111 3567999
Q ss_pred EccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCC
Q 011779 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 343 ~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~ 418 (477)
+.++..+ ..+|..||++|.. +.+.+++|||++|+|+| +.+.. ...+.+.+...|+.++..+.
T Consensus 323 ~~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 388 (441)
T 2yjn_A 323 TVGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQV-------ILPDGWDTGVRAQRTQEFGAGIALPVPEL 388 (441)
T ss_dssp ECCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHHTSEEECCTTTC
T ss_pred EecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEE-------EeCCcccHHHHHHHHHHcCCEEEcccccC
Confidence 9999865 7889999999953 33679999999999999 66553 35566667778999887644
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++++|.++++|++.++++++.+++.. +..+.+++++.+++++.
T Consensus 389 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 389 TPDQLRESVKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 599999999999999999999988887655 56788888887777654
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.55 E-value=4.7e-13 Score=131.60 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..++++.|+.. .+..+.+.+++..+.+ .++++ +++|.+.. .+.+ . .++++|.+.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~---------~~~~~~~~~g~~~~-----~~~~----~--~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG---------LDWHVVLSVGRFVD-----PADL----G--EVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT---------CSSEEEEECCTTSC-----GGGG----C--SCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc---------CCcEEEEEECCcCC-----hHHh----c--cCCCCeEEecC
Confidence 3457777889876 4444444444444421 56677 45676531 1111 1 24679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+. .+|+.+|++|..+ ...+++|||++|+|+| +.... ...+.+.+...|+.++..+.+.++
T Consensus 313 ~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 378 (424)
T 2iya_A 313 VPQL-DILTKASAFITHA------GMGSTMEALSNAVPMV-------AVPQIAEQTMNAERIVELGLGRHIPRDQVTAEK 378 (424)
T ss_dssp CCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHH
T ss_pred CCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEE-------EecCccchHHHHHHHHHCCCEEEcCcCCCCHHH
Confidence 8766 8999999998543 3579999999999999 55443 334556666788888765334899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++++|.++++|++.++++++.+++.. +....++.++.+++++
T Consensus 379 l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 379 LREAVLAVASDPGVAERLAAVRQEIR-EAGGARAAADILEGIL 420 (424)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 99999999999998888877766543 4455666666666554
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.48 E-value=1.1e-12 Score=128.11 Aligned_cols=157 Identities=9% Similarity=-0.003 Sum_probs=105.8
Q ss_pred CCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.++.++++.|++. ..+.++.+++++.++ ++++++.++.... ...+.+++|.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~------------~~~vv~~~g~~~~------------~~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ------------GRRVVLSSGWAGL------------GRIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT------------TCCEEEECTTTTC------------CCSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC------------CCEEEEEeCCccc------------ccccCCCCEEEecC
Confidence 4566777889887 556666676666543 4677776543211 01234679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
.. ...++..+|++|..+ -..++.||+++|+|+| +...++ ..+.+.+...|..++..+.+.++
T Consensus 276 ~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v-------~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~ 341 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQV-------VVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341 (404)
T ss_dssp CC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEE-------EcCCcccHHHHHHHHHHCCCEeccCcCCCCHHH
Confidence 74 488999999999544 3478999999999999 554433 23445555688888766555999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++++.++++ ++.++++.+.+.+.. + -..+++++.+++++
T Consensus 342 l~~ai~~ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 342 LSAALATALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 9999999998 877777666554322 2 34455555554444
No 46
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.47 E-value=9.4e-13 Score=128.40 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|++...++ .+.+.+++..+.+ .+.++++.+.+.... ....+++++.+.++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~ 295 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEW 295 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEee
Confidence 34566777788766443 3444444444422 556777666542111 12246789999998
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
. ....+|..+|+||. .+...+++|||++|+|+|+.+. ..+...+.+.+.+...|..++..+ ..+++
T Consensus 296 ~-p~~~lL~~~~~~v~------h~G~~s~~Eal~~GvP~v~~P~---~~dQ~~na~~v~~~G~g~~l~~~~----~~~~a 361 (400)
T 4amg_A 296 I-PLGALLETCDAIIH------HGGSGTLLTALAAGVPQCVIPH---GSYQDTNRDVLTGLGIGFDAEAGS----LGAEQ 361 (400)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCC------CHHHHHHHHHHTSEEECCTTT----CSHHH
T ss_pred c-CHHHHhhhhhheec------cCCccHHHHHHHhCCCEEEecC---cccHHHHHHHHHHCCCEEEcCCCC----chHHH
Confidence 6 46788999999983 3446789999999999993211 123333445555555777776544 46788
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
|.++++|++.+++..+-+++ +...-+....++.++++
T Consensus 362 l~~lL~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 362 CRRLLDDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 99999999988776665544 43445666777666553
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.44 E-value=7.6e-12 Score=122.54 Aligned_cols=157 Identities=8% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 269 ~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+..++++.|++. ..+..+.++++++++ +.+++++ |.+.. . ...++++|.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~-----~--------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADL-----V--------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTC-----C--------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCcc-----c--------ccCCCCCEEEeCc
Confidence 356788889984 677777777877653 2455554 76521 1 0234578999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+ .++|..||++|..+ ...+++|||++|+|+| +....+ ..+.+.+...|+.++..+.+.++
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 358 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQI-------LLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEE-------ECCCCCccHHHHHHHHHCCCcccCCcCCCCHHH
Confidence 765 56889999999643 2479999999999999 554433 45556666788888765445899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++|.++ .|++.++++.+.+++ +....-.++..+.+++++.
T Consensus 359 l~~~i~~l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 359 LSAALATA-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp HHHHHHHH-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 99999999 998877776665544 3334455555555555554
No 48
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.40 E-value=1e-11 Score=125.76 Aligned_cols=248 Identities=13% Similarity=0.034 Sum_probs=163.3
Q ss_pred eeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhhh--------------------------------
Q 011779 208 IDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAEDN-------------------------------- 250 (477)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~~-------------------------------- 250 (477)
.+|...++.++. .+...+..-+.++.-|-|||+...+ .|...+
T Consensus 419 gVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~ 498 (796)
T 1l5w_A 419 GVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQ 498 (796)
T ss_dssp ESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHH
T ss_pred cccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHH
Confidence 444444555542 1112233455689999999998877 232100
Q ss_pred --HHHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc
Q 011779 251 --VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ 321 (477)
Q Consensus 251 --~~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~ 321 (477)
..+...+.. +++++|+. ++.+.++++.|+..+||+++ ++.++.++.+...+......+++++|.|.+.+..
T Consensus 499 l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y 578 (796)
T 1l5w_A 499 YREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGY 578 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhH
Confidence 112222334 46777764 57799999999999999999 8999888765333321112459999999987654
Q ss_pred hHHHHH---HHHHHH----hcCCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecc
Q 011779 322 TKFESE---LRNYVM----QKKIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKC 390 (477)
Q Consensus 322 ~~~~~~---l~~~~~----~~~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~ 390 (477)
.....- +...++ .-..++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 579 ~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i---- 654 (796)
T 1l5w_A 579 YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV---- 654 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE----
T ss_pred HHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeee----
Confidence 332211 333333 113556 788876 43 445566899999999998668999999999999999999
Q ss_pred ccccccCCCceEEeec--CCceeeecCCCCCHHHHHHH-------HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 391 LYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN-------IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 391 ~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~-------i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
++--|...|+.+. .+||++|.. + ++++.+. ..-.-.+++ .+++-+++. ...|||+.. ..|
T Consensus 655 ---GtLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y 723 (796)
T 1l5w_A 655 ---GTLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKELE---SGKYSDGDK-HAF 723 (796)
T ss_dssp ---ECSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHHH---HTTTTTTCT-TTT
T ss_pred ---cCcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHHH---cCCCCCCcH-HHH
Confidence 9988888887654 369999987 4 6766532 222223553 444444433 367999875 778
Q ss_pred HHHHHHHHh
Q 011779 462 AVVLKEVLK 470 (477)
Q Consensus 462 ~~~~~~~~~ 470 (477)
.++|++++.
T Consensus 724 ~~Ly~~L~~ 732 (796)
T 1l5w_A 724 DQMLHSIGK 732 (796)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHHhc
Confidence 899988764
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=6.2e-10 Score=115.74 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=144.0
Q ss_pred HHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-C
Q 011779 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-D 339 (477)
Q Consensus 261 r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~ 339 (477)
|+.+|++++.+++++..++. |=-+.+++++.++++ +.|+.+|++...+. ...+.+++.+++.|+. +
T Consensus 514 R~~~gLp~~~v~f~~fN~~~--Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQLY--KIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCGG--GCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCccc--cCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 67789999999998887764 677889999999988 78999999987653 3467788888888874 7
Q ss_pred cEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC
Q 011779 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~ 416 (477)
+|+|.+.. ++....|+.+|+++=|.- -+-+.+..||+.+|+|||+-....-+++.|. .++.. |-..++..
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p---~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~--s~l~~~gl~e~ia~-- 653 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL---CNGHTTGMDVLWAGTPMVTMPGETLASRVAA--SQLTCLGCLELIAK-- 653 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS---SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHH--HHHHHHTCGGGBCS--
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC---cCCHHHHHHHHHcCCCEEEccCCCccHhHHH--HHHHHcCCcccccC--
Confidence 89999975 556667889999997753 4568999999999999993322211222221 11111 22223322
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhhh
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
| .+++.+...++..|++.+.++++.-++.... .|+.+.+++.+++.|++++++.
T Consensus 654 ~--~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~ 709 (723)
T 4gyw_A 654 N--RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHY 709 (723)
T ss_dssp S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 4 8999999999999999999999888877655 6999999999999999998754
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.33 E-value=3.1e-11 Score=118.24 Aligned_cols=138 Identities=10% Similarity=0.037 Sum_probs=96.4
Q ss_pred CCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEc
Q 011779 269 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 269 ~~~~il~vGrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+..++++.|++. ..+.++.++++++++ +.+++++ |.+.. . . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~-----~--~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ------------GRRVILSRGWTEL-----V--L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT------------TCCEEEECTTTTC-----C--C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC------------CCeEEEEeCCccc-----c--c------cCCCCCEEEe
Confidence 356777788874 345556666666542 3566665 65521 0 0 2356789999
Q ss_pred cccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCH
Q 011779 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 345 g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~ 420 (477)
++.. ..++|..||++|..+ -..+++||+++|+|+| +.... ...+.+.+...|..++..+.+.
T Consensus 292 ~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~ 357 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQL-------VIPRNTDQPYFAGRVAALGIGVAHDGPTPTF 357 (416)
T ss_dssp SSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSBTHHHHHHHHHHHTSEEECSSSCCCH
T ss_pred ccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEE-------EccCCCCcHHHHHHHHHCCCccCCCCCCCCH
Confidence 9975 678999999999533 3579999999999999 54432 2444566667888887654458
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
++++++|.++ .|++.++++++.+++
T Consensus 358 ~~l~~~i~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 358 ESLSAALTTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHHHHHHHHH-TSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHH
Confidence 9999999999 999887777665543
No 51
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.30 E-value=5.7e-12 Score=107.11 Aligned_cols=133 Identities=6% Similarity=0.039 Sum_probs=98.1
Q ss_pred CCCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEc
Q 011779 268 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 268 ~~~~~il~vGrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+...+++++|++. +.|.+..+++++.++ +.++++++++... ..++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI------------PQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS------------SSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC------------CCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 4567888899986 456667777776532 3678777765311 1345799999
Q ss_pred cccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCC
Q 011779 345 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 345 g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~ 418 (477)
|+..+ ..++ +.||++|..+ .+.+++|||++|+|+| +.+.. +..+.+.+...|+.+++.+.
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i-------~~p~~~~Q~~na~~l~~~g~g~~~~~~~~ 139 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMV-------GIPLFADQPDNIAHMKARGAAVRVDFNTM 139 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHTTTSEEECCTTTC
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEE-------eccchhhHHHHHHHHHHcCCeEEeccccC
Confidence 99755 5667 8999999543 3689999999999999 66553 34566777789999987744
Q ss_pred CHHHHHHHHHHHHhCHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+.++++++|.++++|++.++++
T Consensus 140 ~~~~l~~~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 140 SSTDLLNALKRVINDPSYKENV 161 (170)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHH
Confidence 4899999999999998755444
No 52
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.27 E-value=8.3e-11 Score=119.20 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=163.7
Q ss_pred eeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhh---------------------------h-----
Q 011779 208 IDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAED---------------------------N----- 250 (477)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~---------------------------~----- 250 (477)
.+|...++.++. .+...+..-+.++.-|-|||+...+ .|... .
T Consensus 408 gVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~ 487 (796)
T 2c4m_A 408 GVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLE 487 (796)
T ss_dssp ESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHH
T ss_pred eccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHH
Confidence 445555555553 2222334455789999999988766 22210 0
Q ss_pred ---HHHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 251 ---VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 251 ---~~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
..+...+.. +++++|++ ++.+.++++.|+..+||+++ ++.++.++.+..........+++++|.|.+.+.
T Consensus 488 ~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~ 567 (796)
T 2c4m_A 488 ELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPG 567 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHh
Confidence 112222334 46677764 57799999999999999999 899988876433221101135999999998765
Q ss_pred chHHHHH---HHHHHH----hcCCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeec
Q 011779 321 QTKFESE---LRNYVM----QKKIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 321 ~~~~~~~---l~~~~~----~~~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
......- +...++ .-..++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 568 y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i--- 644 (796)
T 2c4m_A 568 YVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTL--- 644 (796)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEE---
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEE---
Confidence 4332211 333333 114566 788775 44 445566899999999998668999999999999999999
Q ss_pred cccccccCCCceEEeec--CCceeeecCCCCCHHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~---i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
++--|...|+.+. .+||++|....++++++... ..-.-.+++ .+++-+++. ...|||+.. ..|.++
T Consensus 645 ----GtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~L 715 (796)
T 2c4m_A 645 ----GTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDALD---NGTLNDNNS-GLFYDL 715 (796)
T ss_dssp ----EESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTTT---SSSSCCTTC-CHHHHH
T ss_pred ----eccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHHH---cCCCCCCCH-HHHHHH
Confidence 9988888887654 36999998743336666543 222222442 333333332 356999876 779999
Q ss_pred HHHHHh
Q 011779 465 LKEVLK 470 (477)
Q Consensus 465 ~~~~~~ 470 (477)
|++++.
T Consensus 716 y~~L~~ 721 (796)
T 2c4m_A 716 KHSLIH 721 (796)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 999874
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.22 E-value=3.2e-10 Score=115.36 Aligned_cols=248 Identities=14% Similarity=0.059 Sum_probs=160.2
Q ss_pred eeeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhh---------------------------h-H--
Q 011779 207 MIDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAED---------------------------N-V-- 251 (477)
Q Consensus 207 ~~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~---------------------------~-~-- 251 (477)
-.+|...++.++. .+...+...+.++.-|-|||+...+ .|... . .
T Consensus 442 NgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~ 521 (824)
T 2gj4_A 442 NGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIR 521 (824)
T ss_dssp EESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHH
T ss_pred eeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHH
Confidence 3455555555542 2222334456789999999987766 23211 0 0
Q ss_pred ----HHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHHH-HHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 252 ----AKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 252 ----~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~l-l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
.+...+.. +++..|+. ++.+.++++.|+..+||++++ +..+.++.+..........+.+|+|.|.+.+.
T Consensus 522 ~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~ 601 (824)
T 2gj4_A 522 DVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPG 601 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHh
Confidence 11122223 55667764 677999999999999999998 88888775433321001116899999998765
Q ss_pred chHHHHH---HHHHHHhc----CCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeec
Q 011779 321 QTKFESE---LRNYVMQK----KIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 321 ~~~~~~~---l~~~~~~~----~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
......- +...++.. .+++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 602 y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLti--- 678 (824)
T 2gj4_A 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTI--- 678 (824)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEE---
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEE---
Confidence 4332111 34444332 2355 788775 44 445556899999999998768999999999999999999
Q ss_pred cccccccCCCceEEee--cCCceeeecCCCCCHHHHHHHHH-------HHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLAT-HVERRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~--~~~~G~l~~~~d~~~~~la~~i~-------~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
++--|...|+.+ ..+||++|... ++++ .++. .+.+ +++ .+++-++. +...|+|..- .
T Consensus 679 ----gtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~-l~~v~d~i---~~g~fs~~~~-~ 745 (824)
T 2gj4_A 679 ----GTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPE-LRQIIEQL---SSGFFSPKQP-D 745 (824)
T ss_dssp ----ECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHH-HHHHHHHH---HHTTTCTTST-T
T ss_pred ----EEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHH-HHHHHHHH---HhCCCCCCCh-H
Confidence 888777777653 35689999864 5655 4332 2333 333 33333333 3467999877 7
Q ss_pred HHHHHHHHHHh
Q 011779 460 RIAVVLKEVLK 470 (477)
Q Consensus 460 ~~~~~~~~~~~ 470 (477)
.|..+|++++.
T Consensus 746 ~y~~ly~~l~~ 756 (824)
T 2gj4_A 746 LFKDIVNMLMH 756 (824)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 79999998875
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.74 E-value=4.4e-07 Score=82.62 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=128.2
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--h---hhHHH
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--Q---ETINT 147 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--~---~~~~~ 147 (477)
|||+|.+..... |.|. .+...||++|+ +|.+++...+.. +. ...|..+..+.. . ....+
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~-------~~---~~~g~~v~~l~~~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGS-------LI---DEIPYPVYELSSESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTC-------CG---GGCCSCEEECSSSCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHh-------HH---HHCCCeEEEcCccCHHHHHHHHH
Confidence 678888876544 5444 66778888887 788888554321 11 123777766542 2 23445
Q ss_pred hcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 148 ALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 148 ~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
..++|+|++-+... ..|...+..... .+++ .+-+.. . . ..+|.++..+...... .|.
T Consensus 67 ~~~~d~lIvD~Y~~~~~~~~~lk~~~~----~~i~-~iDD~~-~-------~--~~~Dllin~~~~~~~~-------~Y~ 124 (282)
T 3hbm_A 67 EEKFELLIIDHYGISVDDEKLIKLETG----VKIL-SFDDEI-K-------P--HHCDILLNVNAYAKAS-------DYE 124 (282)
T ss_dssp HHTCSEEEEECTTCCHHHHHHHHHHHC----CEEE-EECSSC-C-------C--CCCSEEEECSTTCCGG-------GGT
T ss_pred hCCCCEEEEECCCCCHHHHHHHHHhcC----cEEE-EEecCC-C-------c--ccCCEEEeCCcccchh-------hcc
Confidence 57999999876433 334443332111 1222 233321 0 0 1244444433322210 121
Q ss_pred --cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 011779 227 --IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (477)
Q Consensus 227 --~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~ 304 (477)
++.. ..+ .-|.+.....+.... .+++ .-...+.++++.|..+...-...+++++.+
T Consensus 125 ~~~p~~-~~~-l~G~~Y~~lR~eF~~---------~~~~-~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~---------- 182 (282)
T 3hbm_A 125 GLVPFK-CEV-RCGFSYALIREEFYQ---------EAKE-NRKKKYDFFICMGGTDIKNLSLQIASELPK---------- 182 (282)
T ss_dssp TTCC-C-CEE-EESGGGCCCCHHHHH---------HTTC-CCCCCEEEEEECCSCCTTCHHHHHHHHSCT----------
T ss_pred ccCCCC-CeE-eeCCcccccCHHHHH---------hhhh-ccccCCeEEEEECCCchhhHHHHHHHHhhc----------
Confidence 2222 222 225433322111100 0001 111233455667765544323334444331
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
..+ -.+|.|.+. +..+++++.+++. .++.+.++.+++.++|+.||++|.+ .|.++.|++++|+|
T Consensus 183 -~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P 246 (282)
T 3hbm_A 183 -TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHENIAKLMNESNKLIIS-------ASSLVNEALLLKAN 246 (282)
T ss_dssp -TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSCHHHHHHTEEEEEEE-------SSHHHHHHHHTTCC
T ss_pred -CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CcHHHHHHHHcCCC
Confidence 123 446678774 3567777766653 4899999999999999999999963 25899999999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
.|
T Consensus 247 ~i 248 (282)
T 3hbm_A 247 FK 248 (282)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.94 E-value=1.5e-05 Score=78.48 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=93.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|..... ..+.+.+++..+.+ .+.+++ .+|..... ...+.+.+ + .++++.+.++
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~---------~~~~~lw~~~~~~~~--~l~~~~~~---~--~~~~~~v~~w 332 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEA---------SRVPFIWSLRDKARV--HLPEGFLE---K--TRGYGMVVPW 332 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHH---------HTCCEEEECCGGGGG--GSCTTHHH---H--HTTTEEEESC
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHh---------cCCeEEEEECCcchh--hCCHHHHh---h--cCCceEEecC
Confidence 455677777887643 34444444444432 234554 44543100 00011111 1 1358888898
Q ss_pred cCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCCCCHHHH
Q 011779 347 TLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGKEGITPL 423 (477)
Q Consensus 347 ~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d~~~~~l 423 (477)
..+. .+|+ ++|+||. -+-.++++||+++|+|+|+.+.. .+.......+.+. +.|..++.++.+.+++
T Consensus 333 ~pq~-~vL~h~~~~~fvt------h~G~~S~~Eal~~GvP~i~~P~~---~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l 402 (456)
T 2c1x_A 333 APQA-EVLAHEAVGAFVT------HCGWNSLWESVAGGVPLICRPFF---GDQRLNGRMVEDVLEIGVRIEGGVFTKSGL 402 (456)
T ss_dssp CCHH-HHHTSTTEEEEEE------CCCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTSCCEEECGGGSCCHHHH
T ss_pred CCHH-HHhcCCcCCEEEe------cCCcchHHHHHHhCceEEecCCh---hhHHHHHHHHHHHhCeEEEecCCCcCHHHH
Confidence 7654 6788 7788883 33467999999999999943221 1222334455565 6788777554458999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
+++|.+++.|++ .+++++++++..
T Consensus 403 ~~~i~~ll~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 403 MSCFDQILSQEK-GKKLRENLRALR 426 (456)
T ss_dssp HHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 999999999986 566777766544
No 56
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.93 E-value=0.0019 Score=67.45 Aligned_cols=324 Identities=11% Similarity=0.125 Sum_probs=170.1
Q ss_pred ccEEEEEecc-CCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 74 ~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
+..|+|.+.. -..++-++.+.+ +|.++ ++++.+++..... .....+++++.....+.+.....
T Consensus 352 ~~~ivf~s~~g~~~~~n~~~i~~---~l~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~l~~ 417 (729)
T 3l7i_A 352 PKTIVFESFGGKNYSDSPKYIYE---YMQKYYPNYRYIWSFKNPDK-----------NVVPGSAEKVKRNSAEYYQAYSE 417 (729)
T ss_dssp EEEEEEEBGGGTBSCHHHHHHHH---HHHHHCTTSEEEEEESSGGG-----------CCCCSSCEEEETTSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHHHH---HHHHhCCCceEEEEEcCccc-----------ccCCCCcEEEEECCHHHHHHHhc
Confidence 3456666643 223555565544 44433 4788888744211 00123666666666655555556
Q ss_pred CcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-----------------hhHhhcccccccceeeehhh
Q 011779 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------LDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~~~ 213 (477)
.++++.++.....+ . +.....++.++|+...-... ..........+.+++.+...
T Consensus 418 a~~~v~n~~~~~~~------~--k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~ 489 (729)
T 3l7i_A 418 ASHWVSNARTPLYL------N--KKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYS 489 (729)
T ss_dssp EEEEEESSCCCTTS------C--CCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHH
T ss_pred CcEEEECCCCcccc------c--cCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHH
Confidence 77777766433211 1 11224567778875211110 01112224567777777776
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchh--hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC----C---
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK----G--- 284 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K----g--- 284 (477)
.+.+.+ .++++..+ ++..|..-. .+.... ....++.+++++++++++.+|+|+-...... |
T Consensus 490 ~~~~~~----~f~~~~~~--i~~~G~PR~D~l~~~~~----~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~ 559 (729)
T 3l7i_A 490 TEIFRS----AFWMDEER--ILEIGYPRNDVLVNRAN----DQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYL 559 (729)
T ss_dssp HHHHHH----HTCCCGGG--EEESCCGGGHHHHHSTT----CHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSC
T ss_pred HHHHHH----HhCCCcce--EEEcCCCchHHHhcccc----hHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccc
Confidence 666544 56666554 444555432 221111 1223577899999999999999987655421 1
Q ss_pred --HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEE
Q 011779 285 --QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362 (477)
Q Consensus 285 --~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~ 362 (477)
...-++.+.+... +++.+++-.- |... ......+..+.+.-.....++.++|..||++|.
T Consensus 560 ~~~~~~~~~l~~~l~---------~~~~li~r~H------p~~~---~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lIT 621 (729)
T 3l7i_A 560 FELKIDLDNLYKELG---------DDYVILLRMH------YLIS---NALDLSGYENFAIDVSNYNDVSELFLISDCLIT 621 (729)
T ss_dssp CCCTTCHHHHHHHHT---------TTEEEEECCC------HHHH---TTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEE
T ss_pred cchhhHHHHHHHHcC---------CCeEEEEecC------cchh---ccccccccCCcEEeCCCCcCHHHHHHHhCEEEe
Confidence 1112233333221 4677766544 3221 111112334566656555799999999999993
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-------Cc-eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-------GT-TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-------g~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
= ++-++.|++..++|||.. +.|.. |. -++ .+..-|-++. + .++|.++|.....++
T Consensus 622 D-------ySSv~fD~~~l~kPiif~-----~~D~~~Y~~~~rg~y~d~-~~~~pg~~~~--~--~~eL~~~i~~~~~~~ 684 (729)
T 3l7i_A 622 D-------YSSVMFDYGILKRPQFFF-----AYDIDKYDKGLRGFYMNY-MEDLPGPIYT--E--PYGLAKELKNLDKVQ 684 (729)
T ss_dssp S-------SCTHHHHHGGGCCCEEEE-----CTTTTTTTSSCCSBSSCT-TSSSSSCEES--S--HHHHHHHHTTHHHHH
T ss_pred e-------chHHHHhHHhhCCCEEEe-----cCCHHHHhhccCCcccCh-hHhCCCCeEC--C--HHHHHHHHhhhhccc
Confidence 2 456899999999999932 22221 11 111 1112233333 3 889999998876533
Q ss_pred HHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Q 011779 435 ERRLTMGKRGYERVKEI--FQEHHMAERIAVVLKE 467 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~ 467 (477)
....+. ..+...+. |.-.+.++++.+.+-+
T Consensus 685 ~~~~~~---~~~~~~~~~~~~dg~as~ri~~~i~~ 716 (729)
T 3l7i_A 685 QQYQEK---IDAFYDRFCSVDNGKASQYIGDLIHK 716 (729)
T ss_dssp HHTHHH---HHHHHHHHSTTCCSCHHHHHHHHHHH
T ss_pred hhHHHH---HHHHHHHhCCccCChHHHHHHHHHHh
Confidence 332222 22222222 2333455665554443
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.84 E-value=0.00017 Score=71.49 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=91.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCC-c-chHHHHHHHHHHHhcCCCCcEEEc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMN-A-QTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~-~-~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+...+++..|.+.. ...+.+.+++..+.+ .+.+++++ |.... . .....+.+.+. . ++++.+.
T Consensus 294 ~~~vv~vs~GS~~~-~~~~~~~~~~~~l~~---------~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~--~~~~~v~ 358 (482)
T 2pq6_A 294 PGSVVYVNFGSTTV-MTPEQLLEFAWGLAN---------CKKSFLWIIRPDLVIGGSVIFSSEFTNE---I--ADRGLIA 358 (482)
T ss_dssp TTCEEEEECCSSSC-CCHHHHHHHHHHHHH---------TTCEEEEECCGGGSTTTGGGSCHHHHHH---H--TTTEEEE
T ss_pred CCceEEEecCCccc-CCHHHHHHHHHHHHh---------cCCcEEEEEcCCccccccccCcHhHHHh---c--CCCEEEE
Confidence 34567777787653 344555555544433 44666655 43210 0 00011222222 1 3688999
Q ss_pred cccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee-cCCceeeecCCCCCHH
Q 011779 345 NKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV-NGTTGLLHPVGKEGIT 421 (477)
Q Consensus 345 g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~-~~~~G~l~~~~d~~~~ 421 (477)
++..+. .+|+.+++ ||. -+-.++++||+++|+|+|+.|.. .+.......+. .-+.|..++ .+.+.+
T Consensus 359 ~~~pq~-~~L~h~~~~~~vt------h~G~~s~~Eal~~GvP~i~~P~~---~dQ~~na~~~~~~~G~g~~l~-~~~~~~ 427 (482)
T 2pq6_A 359 SWCPQD-KVLNHPSIGGFLT------HCGWNSTTESICAGVPMLCWPFF---ADQPTDCRFICNEWEIGMEID-TNVKRE 427 (482)
T ss_dssp SCCCHH-HHHTSTTEEEEEE------CCCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTSCCEEECC-SSCCHH
T ss_pred eecCHH-HHhcCCCCCEEEe------cCCcchHHHHHHcCCCEEecCcc---cchHHHHHHHHHHhCEEEEEC-CCCCHH
Confidence 987665 58876665 662 33457999999999999943222 12222334343 455777776 334489
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++.++|.+++.|++ .+++++++++..
T Consensus 428 ~l~~~i~~ll~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 428 ELAKLINEVIAGDK-GKKMKQKAMELK 453 (482)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 99999999999987 466777777654
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.77 E-value=0.00019 Score=70.13 Aligned_cols=155 Identities=11% Similarity=-0.023 Sum_probs=91.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHH-HHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~-~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|++... ..+.+.+.+..+.+ .+.+++++-.+. ..+.+- ...++ .++|+.+.++
T Consensus 272 ~~~vVyvsfGS~~~~-~~~~~~el~~~l~~---------~~~~flw~~~~~-----~~~~lp~~~~~~--~~~~~~vv~w 334 (454)
T 3hbf_A 272 NSSVVYISFGSVVTP-PPHELTALAESLEE---------CGFPFIWSFRGD-----PKEKLPKGFLER--TKTKGKIVAW 334 (454)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHH---------HCCCEEEECCSC-----HHHHSCTTHHHH--TTTTEEEESS
T ss_pred CCceEEEecCCCCcC-CHHHHHHHHHHHHh---------CCCeEEEEeCCc-----chhcCCHhHHhh--cCCceEEEee
Confidence 455677777887643 34555555444433 345565543331 111111 11111 2368888898
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCCCCHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGKEGITPLAK 425 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d~~~~~la~ 425 (477)
..+ ..+++.+++-++-+. +--.+++||+++|+|+|+.+. ..+.......+.+. +.|..++.++.+.+++.+
T Consensus 335 ~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~---~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~ 406 (454)
T 3hbf_A 335 APQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPF---FGDQGLNTILTESVLEIGVGVDNGVLTKESIKK 406 (454)
T ss_dssp CCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCC---STTHHHHHHHHHTTSCSEEECGGGSCCHHHHHH
T ss_pred CCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcc---cccHHHHHHHHHHhhCeeEEecCCCCCHHHHHH
Confidence 765 588999994333333 234789999999999993221 11222233445553 678877765555899999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHH
Q 011779 426 NIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 426 ~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++.+++.+++ .++|++++++..
T Consensus 407 av~~ll~~~~-~~~~r~~a~~l~ 428 (454)
T 3hbf_A 407 ALELTMSSEK-GGIMRQKIVKLK 428 (454)
T ss_dssp HHHHHHSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHCCCh-HHHHHHHHHHHH
Confidence 9999998853 345666665533
No 59
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.68 E-value=0.0012 Score=67.36 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHh------hccC---cCceEEEEEecCCCcchHHHHHHHHHHHhc--
Q 011779 268 NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKE------KKLE---VPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 335 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~------~~~~---~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-- 335 (477)
++.+.++++-|+..+|.+.+ ++..+..+.+.... .... ....++++.|..-+.+. ..+.+.+++...
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 676 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYY-MAKLIIKLINCVAD 676 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCH-HHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 56899999999999999999 77777765432222 1000 24588888888654443 334443433332
Q ss_pred ------CCCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee
Q 011779 336 ------KIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV 405 (477)
Q Consensus 336 ------~l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~ 405 (477)
.+.+ +|.|+.. ++-...++.+||+....|..-.|..|..-+-+|.-|.+.| +|--|...|+.+
T Consensus 677 ~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtl-------gtlDGanvEi~e 749 (879)
T 1ygp_A 677 IVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLII-------GTVDGANVEITR 749 (879)
T ss_dssp HHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEE-------EESCTHHHHHHH
T ss_pred HhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeee-------ecccchhHHHHH
Confidence 2445 7888875 3556677999999999888778999999999999999999 998888888875
Q ss_pred c--CCceeeecC
Q 011779 406 N--GTTGLLHPV 415 (477)
Q Consensus 406 ~--~~~G~l~~~ 415 (477)
+ .+|+++|-.
T Consensus 750 ~vG~eN~fiFG~ 761 (879)
T 1ygp_A 750 EIGEDNVFLFGN 761 (879)
T ss_dssp HHCGGGSEEESC
T ss_pred HcCcccEEEccC
Confidence 4 347777653
No 60
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.62 E-value=0.0052 Score=57.87 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHhhCCCCC-CeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 258 EHVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 258 ~~~r~~~~~~~~-~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
+.+.++.|++.+ +++.+..|.-.+.|.. +.+.++++.+.+ .+.+++++|+. ...+..++..+.
T Consensus 173 ~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~-----~e~~~~~~i~~~ 238 (349)
T 3tov_A 173 QEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGP-----MDLEMVQPVVEQ 238 (349)
T ss_dssp HHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCT-----TTHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCc-----chHHHHHHHHHh
Confidence 344556677654 4555666754556654 467777776654 35678888865 344555555555
Q ss_pred cCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 335 KKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 335 ~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.+ ...+.+.|.. .++..+++.||++|.+-. |..-+ |.++|+|+|+
T Consensus 239 ~~-~~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~ 285 (349)
T 3tov_A 239 ME-TKPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVA 285 (349)
T ss_dssp CS-SCCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEE
T ss_pred cc-cccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEE
Confidence 54 2346666753 679999999999996533 44445 9999999993
No 61
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.56 E-value=0.023 Score=52.88 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=80.2
Q ss_pred hCCCCCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 264 LGVRNEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 264 ~~~~~~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
.+...++++++..|.-.+.|... .+.+.++.+.+ .++++++.++++ .+.+..++..+.. +++
T Consensus 173 ~~~~~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~~g~~----~e~~~~~~i~~~~---~~~ 236 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLAD---------SGIRIKLPWGAP----HEEERAKRLAEGF---AYV 236 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT---------TCCEEEECCSSH----HHHHHHHHHHTTC---TTE
T ss_pred ccccCCCEEEEEeCCCCccccCCHHHHHHHHHHHHH---------CCCcEEEecCCH----HHHHHHHHHHhhC---Ccc
Confidence 34445566777777655566654 55555555532 467888874341 2333344444433 246
Q ss_pred EEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccc---ccCCCceEEeecCCceeeecCC
Q 011779 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQG---TAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 342 ~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~---~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+.|.. .++..+++.||++|-+-. |..=+ |.|+|+|+|+.-.+... ...+....++. +....+-..
T Consensus 237 ~l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~-~~~~cm~~I- 307 (326)
T 2gt1_A 237 EVLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCR-APGNELSQL- 307 (326)
T ss_dssp EECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEE-CGGGCGGGC-
T ss_pred cccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEec-CCcccccCC-
Confidence 677753 788999999999996633 44445 77899999943221100 01122222332 222222222
Q ss_pred CCCHHHHHHHHHHHHhC
Q 011779 417 KEGITPLAKNIVKLATH 433 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~ 433 (477)
+ +++..+++.++++.
T Consensus 308 ~--~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 308 T--ANAVKQFIEENAEK 322 (326)
T ss_dssp C--HHHHHHHHHHTTTT
T ss_pred C--HHHHHHHHHHHHHH
Confidence 3 88888888888763
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.40 E-value=0.00099 Score=65.54 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=83.2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++..|.+...-+.+.+.+++..+.+ .+.+++++-+.... ...+.+.+.... ++++.+.++.
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~---------~~~~~l~~~~~~~~--~l~~~~~~~~~~---~~~~~v~~w~ 340 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKH---------SGVRFLWSNSAEKK--VFPEGFLEWMEL---EGKGMICGWA 340 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHH---------HTCEEEEECCCCGG--GSCTTHHHHHHH---HCSEEEESSC
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHh---------CCCcEEEEECCCcc--cCChhHHHhhcc---CCCEEEEccC
Confidence 445677777887632344444444444433 34566654432100 011112222110 2578888887
Q ss_pred CCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE-eecCCceeee-c---CC--CC
Q 011779 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI-VVNGTTGLLH-P---VG--KE 418 (477)
Q Consensus 348 ~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~-v~~~~~G~l~-~---~~--d~ 418 (477)
.+. .+|+ ++|+||. -+-.++++||+++|+|+|+.+. ..+....... ++.-+.|..+ . .+ +.
T Consensus 341 pq~-~vL~h~~~~~fvt------h~G~~s~~Eal~~GvP~i~~P~---~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~ 410 (463)
T 2acv_A 341 PQV-EVLAHKAIGGFVS------HCGWNSILESMWFGVPILTWPI---YAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410 (463)
T ss_dssp CHH-HHHHSTTEEEEEE------CCCHHHHHHHHHTTCCEEECCC---STTHHHHHHHHHHTSCCEEESCSSCCTTCCCC
T ss_pred CHH-HHhCCCccCeEEe------cCCchhHHHHHHcCCCeeeccc---hhhhHHHHHHHHHHcCeEEEEecccCCCCccc
Confidence 665 5676 6888883 3346899999999999994222 1122223444 3555678777 2 23 23
Q ss_pred CHHHHHHHHHHHHh-CHHHHH
Q 011779 419 GITPLAKNIVKLAT-HVERRL 438 (477)
Q Consensus 419 ~~~~la~~i~~ll~-~~~~~~ 438 (477)
+.+++.++|.++++ +++.++
T Consensus 411 ~~~~l~~ai~~ll~~~~~~r~ 431 (463)
T 2acv_A 411 AAEEIEKGLKDLMDKDSIVHK 431 (463)
T ss_dssp CHHHHHHHHHHHTCTTCTHHH
T ss_pred cHHHHHHHHHHHHhccHHHHH
Confidence 48999999999996 344433
No 63
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.27 E-value=0.0012 Score=62.18 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHhhCCC-CCCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 257 REHVRESLGVR-NEDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 257 ~~~~r~~~~~~-~~~~~il~vGr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
.+.+++.+|++ +++++++..|. ..+.|... .+.++++.|.+ .++++++.|.. ...+..++..
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~-----~e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSA-----KDHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCG-----GGHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeCh-----hhHHHHHHHH
Confidence 45667788876 44566667776 44666654 77777777654 36888998865 2334444444
Q ss_pred HhcC--C-CCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 333 MQKK--I-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 333 ~~~~--l-~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
+..+ . .+.+.+.|.. .++..+++.||++|.+.. |..-+ |.|+|+|+|+.
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 3322 0 1234566753 788999999999997754 33333 99999999944
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.18 E-value=0.00013 Score=63.53 Aligned_cols=79 Identities=6% Similarity=-0.085 Sum_probs=52.0
Q ss_pred cEEEccccCCHHHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC--CCceEEeecCCceeeecCC
Q 011779 340 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA--GGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~--gg~~e~v~~~~~G~l~~~~ 416 (477)
++...++.+++..+|+ .||++|. -+-..+++|++++|+|.|..+.+. ..+. ...++.+.+...++++
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIs------haGagTv~Eal~~G~P~IvVP~~~-~~~~HQ~~nA~~l~~~G~~~~~--- 184 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVIS------HAGTGSILDSLRLNKPLIVCVNDS-LMDNHQQQIADKFVELGYVWSC--- 184 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEE------SSCHHHHHHHHHTTCCCCEECCSS-CCCCHHHHHHHHHHHHSCCCEE---
T ss_pred eEEEeeccchHHHHHHhcCCEEEE------CCcHHHHHHHHHhCCCEEEEcCcc-cccchHHHHHHHHHHCCCEEEc---
Confidence 5677788899999999 9999994 334679999999999999544432 1100 0112233333345554
Q ss_pred CCCHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKL 430 (477)
Q Consensus 417 d~~~~~la~~i~~l 430 (477)
+ ++.++++|.++
T Consensus 185 ~--~~~L~~~i~~l 196 (224)
T 2jzc_A 185 A--PTETGLIAGLR 196 (224)
T ss_dssp C--SCTTTHHHHHH
T ss_pred C--HHHHHHHHHHH
Confidence 2 56677777776
No 65
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.09 E-value=0.0053 Score=60.60 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=54.2
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG--- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~--- 416 (477)
+.+.++..+. .+++.+++-++=+. |--.+++||+++|+|+|+.+.. .+.......+ +.-+.|..++..
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~---~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLY---AEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEecccc---ccchHHHHHHHHHhCeEEEeecccCC
Confidence 4445576544 89999995332232 3347899999999999932221 1222234443 455677766543
Q ss_pred CCCHHHHHHHHHHHHhC
Q 011779 417 KEGITPLAKNIVKLATH 433 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~ 433 (477)
..+.++++++|.+++.+
T Consensus 413 ~~~~~~l~~av~~vl~~ 429 (480)
T 2vch_A 413 LVRREEVARVVKGLMEG 429 (480)
T ss_dssp CCCHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHhcC
Confidence 33489999999999983
No 66
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=90.78 E-value=0.6 Score=43.06 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=47.4
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
+|++|||+|+ |+..+.....++|.+.||+|..+...++.... ...........|++++.....
T Consensus 19 ~~~~mrIvf~-------G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~~ 89 (329)
T 2bw0_A 19 YFQSMKIAVI-------GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQALP 89 (329)
T ss_dssp --CCCEEEEE-------CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEECH
T ss_pred cCCCCEEEEE-------cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCcccccccccH
Confidence 4666899998 33456666778888889998755543221110 112334456678888655422
Q ss_pred --hhHHHhcCCcEEEEcC
Q 011779 143 --ETINTALKADLIVLNT 158 (477)
Q Consensus 143 --~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++-.
T Consensus 90 ~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 90 DVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEee
Confidence 2334567999999864
No 67
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=88.25 E-value=1.4 Score=40.31 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch----
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ---- 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~---- 142 (477)
+|++|||+|+.. ..+.....++|.+.||+|..+..+++....+ ...++.......|++++.....
T Consensus 4 m~~~mrivf~Gt-------~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 76 (318)
T 3q0i_A 4 MSQSLRIVFAGT-------PDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDE 76 (318)
T ss_dssp ---CCEEEEECC-------SHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHH
T ss_pred cccCCEEEEEec-------CHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHH
Confidence 466789998853 3456666778888899987555443222111 1123445566788888654332
Q ss_pred -hhHHHhcCCcEEEEcC
Q 011779 143 -ETINTALKADLIVLNT 158 (477)
Q Consensus 143 -~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++-.
T Consensus 77 ~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 2445678999999864
No 68
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=86.33 E-value=5.2 Score=34.57 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=47.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
.||||+|+.. |....+..+.++|.+. +++|..+..+.+.. .........|++++.+...
T Consensus 21 ~~~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~------~~~~~A~~~gIp~~~~~~~~~~~r~~~ 89 (229)
T 3auf_A 21 HMIRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADA------YGLERARRAGVDALHMDPAAYPSRTAF 89 (229)
T ss_dssp TCEEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTC------HHHHHHHHTTCEEEECCGGGSSSHHHH
T ss_pred CCcEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCch------HHHHHHHHcCCCEEEECcccccchhhc
Confidence 3478988874 3235788888888876 67876555443322 1234556789998753221
Q ss_pred ----hhHHHhcCCcEEEEcC
Q 011779 143 ----ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ----~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 90 ~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEcC
Confidence 1334567999999865
No 69
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=85.95 E-value=4.5 Score=34.64 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=46.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------- 142 (477)
||||+++.. |....+..+.++|.+.++ +|..+..+.+.. .........|++++.+...
T Consensus 1 m~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~------~~~~~A~~~gIp~~~~~~~~~~~r~~~~ 69 (216)
T 2ywr_A 1 MLKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKA------YAIERCKKHNVECKVIQRKEFPSKKEFE 69 (216)
T ss_dssp CEEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTC------HHHHHHHHHTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCh------HHHHHHHHcCCCEEEeCcccccchhhhh
Confidence 368888863 333678888899988887 765444443322 1234456678888743221
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..++|+|++-.
T Consensus 70 ~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 1334567999999864
No 70
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=85.63 E-value=1.2 Score=39.88 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=30.2
Q ss_pred cCCCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEec
Q 011779 70 SFMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 70 ~~~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
..|+.||||+|.....+.+.. ......++.|.+.||+|.++-.
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 358889999998665555544 4456778899999999999874
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=85.40 E-value=5.8 Score=30.35 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=71.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---------hcCEEEEcCCCCCCcccHHHHHHH
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---------~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
.+++|+.+.. .....+.+..++.|....|......++....+. ..|++++-... .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777763 467777888887765435665555555555554 37888865541 344566777766
Q ss_pred H-----cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 380 A-----FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 380 a-----~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
. .++|+|+ .+.... ..+....|..+++..|-+ .+++.+.|..++.
T Consensus 78 ~~~~~~~~~pii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVV------LSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEE------EecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 5 4578873 233222 123344577889999888 9999999988764
No 72
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=85.11 E-value=20 Score=31.73 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=101.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
.+..+|.++.+.....-....+..+.+++.+.|+++.++......... . . ........++
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~-~-------------~~~~l~~~~v 65 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVRE------R-E-------------AVGQFFERRV 65 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHH------H-H-------------HHHHHHHTTC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH------H-H-------------HHHHHHHCCC
Confidence 345679999876533222355667777888899999988754332110 0 0 0112234679
Q ss_pred cEEEEcCcc-hhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 152 DLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 152 DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
|.|++.... ....+..+...+ .|++..-..... .....+..+.........+++.+. ...
T Consensus 66 dgiIi~~~~~~~~~~~~~~~~~-----iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~---G~~ 126 (291)
T 3egc_A 66 DGLILAPSEGEHDYLRTELPKT-----FPIVAVNRELRI-----------PGCGAVLSENVRGARTAVEYLIAR---GHT 126 (291)
T ss_dssp SEEEECCCSSCCHHHHHSSCTT-----SCEEEESSCCCC-----------TTCEEEEECHHHHHHHHHHHHHHT---TCC
T ss_pred CEEEEeCCCCChHHHHHhhccC-----CCEEEEecccCC-----------CCCCEEEECcHHHHHHHHHHHHHc---CCC
Confidence 988876543 222223222223 344432222210 112333333333344444444432 345
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
++.++....+...... .....++ .-++.|++.+...+ ..+......+...+.+.+. +.++..
T Consensus 127 ~i~~i~~~~~~~~~~~-----R~~gf~~-~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----------~~~~~~ 188 (291)
T 3egc_A 127 RIGAIVGSAGLMTSRE-----RLKGFRA-AMSAAGLPVRQEWI-AAGGVRADNGRDGAIKVLT-----------GADRPT 188 (291)
T ss_dssp SEEEECSCTTSHHHHH-----HHHHHHH-HHHHTTCCCCGGGE-EC------CCHHHHHHHHT-----------C-CCCS
T ss_pred EEEEEeCCCCCcCHHH-----HHHHHHH-HHHHcCCCCCHHHe-EeCCCChhHHHHHHHHHHh-----------CCCCCc
Confidence 6777754332211100 0011122 22344655443323 2355666677655444332 336666
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
.+++.++ .....+.+.+++.|+ ++.|.+.|+-
T Consensus 189 ai~~~~d-----~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 189 ALLTSSH-----RITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp EEEESSH-----HHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred EEEECCc-----HHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 7777765 344456666777776 4788899974
No 73
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=85.00 E-value=5.1 Score=31.03 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=70.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH----hcCEEEEcCCCCCCcccHHHHHHHH---c
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA---F 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (477)
.+++|+.+.. .....++...++.|. .|......++....+. ..|++++-... .+.-|+.+++.+. .
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 4677887752 456777777777663 3444333344444444 57888776542 4445666666554 3
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
.+|+|. .+.... ..+.+..|..+++..|-+ .+++..+|..++...
T Consensus 77 ~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 77 HMAVII------LTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRK 124 (143)
T ss_dssp TCEEEE------EECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCeEEE------EECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHH
Confidence 677773 333322 233455678899999988 999999999988643
No 74
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=84.93 E-value=2.4 Score=38.76 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=46.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch-----h
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~-----~ 143 (477)
|+|||+|+... .+.....++|.+.||+|..+..+++....+ ...++.......|++++..... .
T Consensus 1 ~~mrivf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTP-------QFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECS-------GGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCC-------HHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 46789888643 244455677777899987665443322111 1223445556788888754332 2
Q ss_pred hHHHhcCCcEEEEcC
Q 011779 144 TINTALKADLIVLNT 158 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (477)
...+..+||++++-.
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 445678999999864
No 75
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=84.70 E-value=24 Score=32.31 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC--CcEEEccccCC
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--DRVHFVNKTLT 349 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~~ 349 (477)
..+...+++..+.+ ++|+...+++.+. .......+.+++.|+. +.|.+.|+-..
T Consensus 188 ~~~~~~~~~~~~L~-------~~~~~~aI~~~~d-----~~a~g~~~al~~~G~~vP~di~vvg~d~~ 243 (350)
T 3h75_A 188 NRERAYRQAQQLLK-------RYPKTQLVWSAND-----EMALGAMQAARELGRKPGTDLLFSGVNSS 243 (350)
T ss_dssp CHHHHHHHHHHHHH-------HCTTEEEEEESSH-----HHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred cHHHHHHHHHHHHH-------hCCCcCEEEECCh-----HHHHHHHHHHHHcCCCCCCCeEEEecCCC
Confidence 34555566666655 4578888888765 3444566667777764 77999997533
No 76
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=84.41 E-value=6 Score=30.66 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=71.8
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++|+.+.. .....++...++.+....|......++....+.. .|++++-... .+.-|+.+++.+..
T Consensus 5 ~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~~ 79 (144)
T 3kht_A 5 SKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGAN 79 (144)
T ss_dssp CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSSTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcccc
Confidence 46788888763 4667778888877654335444443444444433 5887765541 44457778887765
Q ss_pred -CCCEEeeccccccccCCCc---eEEeecCCceeeecCC-CCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~ 432 (477)
++|+|+ .+..... .+.+..|..+++..|- + .+++.++|..+++
T Consensus 80 ~~~pii~------~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 80 QHTPIVI------LTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTCCEEE------EETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred cCCCEEE------EeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 578883 2222221 2344567889999998 7 9999999998875
No 77
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=83.84 E-value=6.4 Score=33.53 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------- 142 (477)
||||.++.. |....+..+.++|.+. +++|..+..+.+.. .........|++++.....
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCcccccchhhhH
Confidence 467777763 3335677888888876 68887555443332 2344556778988753321
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 72 ~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEch
Confidence 2334568999999865
No 78
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=83.54 E-value=7.2 Score=29.08 Aligned_cols=71 Identities=14% Similarity=0.329 Sum_probs=46.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
++++|.|.... =..+.+++.+++.|++-.|.-.+ ..++...+..+|+++.... -.. -..-++..+ .++||+
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~~~~D~Ii~t~~--l~~-~~~~~~~~~~~~~~pv~ 80 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIA-ETRLSEVVDRFDVVLLAPQ--SRF-NKKRLEEITKPKGIPIE 80 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEEC-STTHHHHTTTCSEEEECSC--CSS-HHHHHHHHHHHHTCCEE
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhcCCCCEEEECCc--cHH-HHHHHHHHhcccCCCEE
Confidence 55677776555 56788999999988853443333 3677777889999887665 221 133344433 689998
No 79
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=82.89 E-value=5.9 Score=34.56 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh-----hhHHhhhhhhhhhcCcEE-E--ecc---
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-----DEVIYSLEHKMWDRGVQV-I--SAK--- 140 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-----~~~~~~~~~~~~~~g~~v-~--~~~--- 140 (477)
|++++||+|.+. |.-.+..+--....+.+.|++|.+++...+... ..............|+.. . .++
T Consensus 1 ~~~~~vL~v~aH--PDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~~ 78 (242)
T 2ixd_A 1 MSGLHILAFGAH--ADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRG 78 (242)
T ss_dssp -CCCSEEEEESS--TTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTC
T ss_pred CCCccEEEEEeC--CChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCCC
Confidence 456788888843 333223333334455668999988884333221 111222333344456542 1 111
Q ss_pred ---------chhhHHHhcCCcEEEEcC
Q 011779 141 ---------GQETINTALKADLIVLNT 158 (477)
Q Consensus 141 ---------~~~~~~~~~~~DiV~~~~ 158 (477)
....+++..+||+|+++.
T Consensus 79 ~~~~~~~~~~l~~~ir~~~PdvV~t~~ 105 (242)
T 2ixd_A 79 LYMKEEYIREIVKVIRTYKPKLVFAPY 105 (242)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 112455667899988875
No 80
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=82.54 E-value=6.7 Score=30.78 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH-----------hcCEEEEcCCCCCCcccHHHH
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-----------AIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~-----------~aDv~v~pS~~~~E~~g~~~l 376 (477)
..+++|+.+.. .....+++..++.|....|......++....+. ..|++++-..- .+.-|+.++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 35778888763 467778888888876445665554455555552 36777765431 455577777
Q ss_pred HHHHc-----CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 377 EAMAF-----QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 377 EAma~-----G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
+.+.. ++|+|+ .+.... ..+....|..+++..|-+ .+++.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~------~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVI------LTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEE------EecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77664 578873 233322 123445677899999888 999999998874
No 81
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=82.02 E-value=7.8 Score=32.88 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------- 141 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-------- 141 (477)
|.++||+++.+ |....+..+..++.+.+ ++|..+.++.+.... .+.....|++++....
T Consensus 5 m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~------l~~A~~~gIp~~~~~~~~~~~r~~ 73 (209)
T 4ds3_A 5 MKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGG------LAKAEAAGIATQVFKRKDFASKEA 73 (209)
T ss_dssp -CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCGGGSSSHHH
T ss_pred CCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHH------HHHHHHcCCCEEEeCccccCCHHH
Confidence 66778888874 33467888888887643 687766654433211 2345667888875432
Q ss_pred ----hhhHHHhcCCcEEEEcC
Q 011779 142 ----QETINTALKADLIVLNT 158 (477)
Q Consensus 142 ----~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||+|++-.
T Consensus 74 ~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 74 HEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEec
Confidence 11344668999999865
No 82
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=81.89 E-value=4.6 Score=36.87 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=48.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch-----h
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~-----~ 143 (477)
+||||+|+... .+.....++|.+.||+|..+..+++....+ ...++.......|++++..... .
T Consensus 3 ~mmrIvf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~ 75 (317)
T 3rfo_A 3 AMIKVVFMGTP-------DFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEY 75 (317)
T ss_dssp TTSEEEEECCS-------TTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHH
T ss_pred CceEEEEEeCC-------HHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHH
Confidence 56899988643 244555677777899987666544332211 1123445556778888754332 2
Q ss_pred hHHHhcCCcEEEEcC
Q 011779 144 TINTALKADLIVLNT 158 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (477)
...+..+||++++-.
T Consensus 76 ~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 76 EKVLALEPDLIVTAA 90 (317)
T ss_dssp HHHHHHCCSEEEESS
T ss_pred HHHHhcCCCEEEEcC
Confidence 334568999999864
No 83
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=80.97 E-value=3.7 Score=35.41 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=39.6
Q ss_pred ccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCc-EEEeccchhhHH-
Q 011779 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVISAKGQETIN- 146 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~- 146 (477)
...++.|+|++.. |....=..+++.|.++|++|.++...... ...+...++ .++.......+.
T Consensus 16 ~~~l~~~~ilVtG------atG~iG~~l~~~L~~~G~~V~~~~R~~~~---------~~~~~~~~~~~~~~~Dl~~~~~~ 80 (236)
T 3e8x_A 16 NLYFQGMRVLVVG------ANGKVARYLLSELKNKGHEPVAMVRNEEQ---------GPELRERGASDIVVANLEEDFSH 80 (236)
T ss_dssp -----CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESSGGG---------HHHHHHTTCSEEEECCTTSCCGG
T ss_pred ccCcCCCeEEEEC------CCChHHHHHHHHHHhCCCeEEEEECChHH---------HHHHHhCCCceEEEcccHHHHHH
Confidence 3445677876653 33345567888899999999999855322 112222355 554433221111
Q ss_pred HhcCCcEEEEcC
Q 011779 147 TALKADLIVLNT 158 (477)
Q Consensus 147 ~~~~~DiV~~~~ 158 (477)
...++|+|+...
T Consensus 81 ~~~~~D~vi~~a 92 (236)
T 3e8x_A 81 AFASIDAVVFAA 92 (236)
T ss_dssp GGTTCSEEEECC
T ss_pred HHcCCCEEEECC
Confidence 123688887654
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.77 E-value=11 Score=29.54 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=66.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.. .....+.......|. .|......++....+. ..|++++-... .+.-|..+++.+. ..+
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~~ 76 (155)
T 1qkk_A 4 PSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPDL 76 (155)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTTS
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCC
Confidence 4677777763 456677777777664 3443332223222222 36887765441 3444666666553 468
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
|+|+ .+.... ..+.+..|..+++..|-+ .+++...|..++...
T Consensus 77 pii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 77 PMIL------VTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKR 122 (155)
T ss_dssp CEEE------EECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CEEE------EECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHH
Confidence 8883 222222 233445677889999888 999999999887643
No 85
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=80.68 E-value=12 Score=28.64 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=69.4
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++|+.+.. .....++...++.|. .|......++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCccc
Confidence 45777877752 456677777777664 3444433334333433 35888775542 45557778877764
Q ss_pred -CCCEEeeccccccccCCC---ce-EEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~-e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .+.... .. +....|..+++..|-+ .+++.++|..+++
T Consensus 79 ~~~~ii~------~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~ 126 (140)
T 3grc_A 79 RDLAIVV------VSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAID 126 (140)
T ss_dssp TTCEEEE------ECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCCCEEE------EecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 678883 222221 12 4455677889999988 9999999998876
No 86
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=80.36 E-value=10 Score=28.70 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH-H--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-A--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~-~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
..+++|+.+.. .....+++..++.|.. .+.......+....+ . ..|++++-..- .+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 35678887763 4677778888877753 344333323333333 2 36887764431 45557788887754
Q ss_pred --CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .|..... .+.+..|..+++..|-+ .+++.+++..++.
T Consensus 79 ~~~~pii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 79 FKEIPIIM------ITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLG 126 (129)
T ss_dssp CTTCCEEE------EESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHC
T ss_pred CCCCeEEE------EeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhc
Confidence 578883 3333322 23445678899999988 9999999998875
No 87
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=80.27 E-value=6.6 Score=30.52 Aligned_cols=111 Identities=7% Similarity=0.117 Sum_probs=69.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....+.......|. .|......++....+. ..|++++-... .+.-|+.+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 457888888763 355666666666654 3444443344444443 37888876542 44457778887764
Q ss_pred --CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
++|+|+ .+..... .+.+..|..+++..|-+ .+++.+.|..++.
T Consensus 80 ~~~~pii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 127 (147)
T 2zay_A 80 TASIPVIA------LSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLK 127 (147)
T ss_dssp TTTSCEEE------EESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEE------EeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 678873 3333222 22345677899999988 9999999998875
No 88
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=79.73 E-value=2.6 Score=35.42 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+||||+++..+. .|-.+..+..+++.+.+.|++|.++...
T Consensus 3 M~M~kilii~~S~-~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYSR-HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeCC-CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 5667999888653 3444577888899999999999988743
No 89
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=78.95 E-value=11 Score=28.98 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=71.0
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh-------cCEEEEcCCCCCCcccHHHHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~-------aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
...+++|+.+.. .....+....+..+....|......++....+.. .|++++-..- .+.-|+.+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 446778887762 3566677777766542244444444454455544 7888876542 455677777766
Q ss_pred Hc-------CCCEEeeccccccccCCCc---eEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 380 AF-------QLPVLLQKCLYQGTAAGGT---TEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 380 a~-------G~PvI~~~~~~~~~~~gg~---~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.. ..|+|. .+..... .+....| ..+++..|-+ .+++.++|.+......
T Consensus 83 ~~~~~~~~~~~~ii~------~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCL------LSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEGH 141 (146)
T ss_dssp HHHCGGGTTTCEEEE------ECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC--
T ss_pred HHhhhhccCCCeEEE------EeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhcc
Confidence 54 567772 2222221 2233445 6789999988 9999999999887543
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=78.23 E-value=15 Score=28.68 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=65.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh---cCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
.+++|+.+.. .....+....+. + -.|......++....+.. .|++++-..- .+.-|+.+++.+. ..
T Consensus 5 ~~ILivdd~~----~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 76 (151)
T 3kcn_A 5 ERILLVDDDY----SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISPN 76 (151)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCH----HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCC
Confidence 5677887762 345555555543 3 244444433444444433 3888865441 4445666666554 46
Q ss_pred CCEEeeccccccccCCC---ceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.|+|+ .+.... ..+.+..| ..+++..|-+ .+++.++|..++....
T Consensus 77 ~~ii~------~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 77 SVYLM------LTGNQDLTTAMEAVNEGQVFRFLNKPCQ--MSDIKAAINAGIKQYD 125 (151)
T ss_dssp CEEEE------EECGGGHHHHHHHHHHTCCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred cEEEE------EECCCCHHHHHHHHHcCCeeEEEcCCCC--HHHHHHHHHHHHHHHH
Confidence 77772 222222 22344456 6789999988 9999999999886443
No 91
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=77.84 E-value=12 Score=28.76 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=71.6
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH------------hcCEEEEcCCCCCCcccHHH
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA------------AIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~------------~aDv~v~pS~~~~E~~g~~~ 375 (477)
..+++|+.+.. .....++...++.|....|......++....+. ..|++++-... .+.-|+.+
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGREV 80 (149)
T ss_dssp TSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHHH
T ss_pred CccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHHH
Confidence 45677887763 466777778887765335655555455555554 36888865541 34456777
Q ss_pred HHHHH-----cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 376 IEAMA-----FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 376 lEAma-----~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
++.+. ..+|+|+ .+.... ..+....|..+++..|-+ .+++.+.|..++.
T Consensus 81 ~~~l~~~~~~~~~~ii~------~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVI------MTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEE------EeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 77776 4578773 233222 123344577889998888 9999999988764
No 92
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=77.62 E-value=8.6 Score=35.01 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=46.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch-----h
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~-----~ 143 (477)
++|||+|+... .+.....++|.+.||+|..+..+++....+ ............|++++..... .
T Consensus 2 ~~mrIvf~Gt~-------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 74 (314)
T 1fmt_A 2 ESLRIIFAGTP-------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQ 74 (314)
T ss_dssp CCCEEEEEECS-------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHH
T ss_pred CCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHH
Confidence 45789888742 345555566667799987555443222111 0113445556778888654332 2
Q ss_pred hHHHhcCCcEEEEcC
Q 011779 144 TINTALKADLIVLNT 158 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (477)
...+..+||++++-.
T Consensus 75 ~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 75 QLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHTTCSEEEEES
T ss_pred HHHHhcCCCEEEEee
Confidence 344668999998864
No 93
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=77.39 E-value=16 Score=28.60 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=68.1
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---c
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---F 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (477)
...+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-... .+.-|..+++.+. .
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQ----PILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRM-PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSC-SSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHhCC
Confidence 456788888763 456677777776654 3444433344444443 35888765441 3344666666553 3
Q ss_pred CCCEEeeccccccccCCC---ceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
.+|+|+ .+.... ..+.+..| ..+++..|-+ .+++.++|..++...
T Consensus 79 ~~~ii~------ls~~~~~~~~~~~~~~g~~~~~l~kP~~--~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 79 DIERVV------ISGYADAQATIDAVNRGKISRFLLKPWE--DEDVFKVVEKGLQLA 127 (154)
T ss_dssp TSEEEE------EECGGGHHHHHHHHHTTCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCcEEE------EecCCCHHHHHHHHhccchheeeeCCCC--HHHHHHHHHHHHHHH
Confidence 678773 222222 12233344 6789998888 999999999887643
No 94
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=77.27 E-value=9.7 Score=29.10 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=64.6
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--c-
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~- 381 (477)
...+++|+.+.. .....+....+..|. .|......++....+. ..|++++| +.-|+.+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~-----~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVS-----DKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEEC-----STTHHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEc-----CccHHHHHHHHHhcCC
Confidence 456777777652 356666777776654 3444333334334433 35887733 333555665554 3
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCC-CCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 433 (477)
.+|+|+ .+.... ..+.+..|..+++..|- + .+++.++|..++..
T Consensus 86 ~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLV------SSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEE------EESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEE------EeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 788883 233222 22334567788999987 8 99999999888753
No 95
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=77.15 E-value=10 Score=32.76 Aligned_cols=92 Identities=7% Similarity=-0.001 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC--CcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEE
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLV 361 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v 361 (477)
-++.+.++++++.+ .+.+++|+..+. .....+...+.+..+++|. .+..+-..++..+.+..||.++
T Consensus 16 ~l~~~~~~l~~~~~---------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~ 84 (229)
T 1fy2_A 16 WLEHALPLIANQLN---------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVADPLAAIEKAEIII 84 (229)
T ss_dssp TTTTTHHHHHHHHT---------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSCHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHhc---------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEeccccHHHHHhcCCEEE
Confidence 35555677776654 345677776552 2222466677777888875 3444433366778899999999
Q ss_pred EcCCC--------CCCcccHHHHHHHHcCCCEE
Q 011779 362 QNSQA--------WGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 362 ~pS~~--------~~E~~g~~~lEAma~G~PvI 386 (477)
+|--. ..-++--.+-|+...|+|++
T Consensus 85 lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~ 117 (229)
T 1fy2_A 85 VGGGNTFQLLKESRERGLLAPMADRVKRGALYI 117 (229)
T ss_dssp ECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEE
T ss_pred ECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEE
Confidence 99631 00122234677888999998
No 96
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=77.11 E-value=14 Score=28.74 Aligned_cols=112 Identities=11% Similarity=0.151 Sum_probs=67.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---------hcCEEEEcCCCCCCcccHHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---------~aDv~v~pS~~~~E~~g~~~lE 377 (477)
...+++|+.+.. .....++...+..+....|.......+....+. ..|++++-..- .+.-|..+++
T Consensus 7 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCeEEEEECCH----HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CCCcHHHHHH
Confidence 346778888762 356667777776554223433333344444444 36888865431 3334667777
Q ss_pred HHHc-----CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 378 AMAF-----QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 378 Ama~-----G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
.+.. .+|+|+ .+.... ..+....|..|++..|-+ .+++.++|..++
T Consensus 82 ~l~~~~~~~~~piii------ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~ 135 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVV------LTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIE 135 (149)
T ss_dssp HHHHCTTTTTSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEE------EECCCChHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHH
Confidence 7653 568773 333322 223345677899999888 899999888764
No 97
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=76.60 E-value=13 Score=28.38 Aligned_cols=111 Identities=10% Similarity=0.023 Sum_probs=68.6
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....+....+..|. .|......++....+.. .|++++-... .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 456788888763 456777777777664 35444433444444443 5777765441 34456777777754
Q ss_pred --CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .+.... ..+.+..|..+++..|-+ .+++.+.|..++.
T Consensus 79 ~~~~pii~------~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVM------LTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEE------EECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEE------EECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 467773 222222 223344566788988888 9999999988864
No 98
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=76.58 E-value=37 Score=29.40 Aligned_cols=210 Identities=7% Similarity=0.023 Sum_probs=102.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
..+|.++.+.....-.......+.+++.+.|+++.++......... ... . ......++|-
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------~-~~l~~~~vdg 61 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSE------RQL-------------Q-QLFRARRCDA 61 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHH------HHH-------------H-HHHHHTTCSE
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH------HHH-------------H-HHHHHcCCCE
Confidence 3578888876533222355666777888899999988754321100 000 1 1123457898
Q ss_pred EEEcCcc--hhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCC
Q 011779 154 IVLNTAV--AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 231 (477)
Q Consensus 154 V~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 231 (477)
|++.... ....+..+...++| ++..-..... .....+..+.........+++.+. ...+
T Consensus 62 iIi~~~~~~~~~~~~~~~~~~iP-----vV~~~~~~~~-----------~~~~~V~~d~~~~~~~a~~~L~~~---G~~~ 122 (272)
T 3o74_A 62 LFVASCLPPEDDSYRELQDKGLP-----VIAIDRRLDP-----------AHFCSVISDDRDASRQLAASLLSS---APRS 122 (272)
T ss_dssp EEECCCCCSSCCHHHHHHHTTCC-----EEEESSCCCT-----------TTCEEEEECHHHHHHHHHHHHHTT---CCSE
T ss_pred EEEecCccccHHHHHHHHHcCCC-----EEEEccCCCc-----------cccCEEEEchHHHHHHHHHHHHHC---CCcE
Confidence 8876532 23344444444443 3332221111 012233333333334444444322 3356
Q ss_pred eEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC-ceE
Q 011779 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVH 310 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~ 310 (477)
+.++....+.... ....+.+++.+.-..-+......+. -..+...+++.++.+ +++ +..
T Consensus 123 i~~i~~~~~~~~~---------~~R~~gf~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-------~~~~~~~ 182 (272)
T 3o74_A 123 IALIGARPELSVS---------QARAGGFDEALQGYTGEVRRYQGEA----FSRECGQRLMQQLID-------DLGGLPD 182 (272)
T ss_dssp EEEEEECTTSHHH---------HHHHHHHHHHTTTCCSEEEEEEESS----SSHHHHHHHHHHHHH-------HHTSCCS
T ss_pred EEEEecCCCCccH---------HHHHHHHHHHHHHcCCChheeecCC----CCHHHHHHHHHHHHh-------cCCCCCc
Confidence 7666533222111 0112334443321111223333333 344555566666554 234 556
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcC-CCCcEEEcccc
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT 347 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~ 347 (477)
.+++.++ .....+.+.+++.| .++.|.+.|+-
T Consensus 183 ai~~~~d-----~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 183 ALVTTSY-----VLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp EEEESSH-----HHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred EEEEeCc-----hHHHHHHHHHHHcCCCccceEEEEeC
Confidence 6777765 34455667777777 46778888874
No 99
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=76.23 E-value=4.6 Score=31.29 Aligned_cols=41 Identities=10% Similarity=-0.081 Sum_probs=30.4
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEE-EEEecCCC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKV-NWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V-~v~~~~~~ 115 (477)
||++++....+.|... .....++..+.+.||+| .|+...++
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dG 43 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDG 43 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechH
Confidence 5777777665543222 66889999999999999 88885544
No 100
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=76.03 E-value=20 Score=27.25 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF-- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (477)
...+++|+.+.. .....++...++ .|.. .|......++....+.. .|++++-... .+.-|..+++.+..
T Consensus 7 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 7 NDFSILIIEDDK----EFADMLTQFLENLFPYA-KIKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSICHRIKSTP 80 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHCTTC-EEEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHHHHHHHTST
T ss_pred CCceEEEEECCH----HHHHHHHHHHHhccCcc-EEEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHHHHHHHhCc
Confidence 346788888763 456677777777 5542 24444444444444433 6888876541 34456777777754
Q ss_pred ---CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 ---QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 ---G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|+ .+..... .+.+..|..+++..|-+ .+++.++|..++..
T Consensus 81 ~~~~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 ATANIIVIA------MTGALTDDNVSRIVALGAETCFGKPLN--FTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTSEEEE------EESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHT
T ss_pred cccCCcEEE------EeCCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHh
Confidence 567772 2333222 23345677889999888 99999999988763
No 101
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=75.46 E-value=3.1 Score=34.91 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=30.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+||||+++..+ .|.....+..+++.+.+.|++|.++....
T Consensus 3 ~mmkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 3 CKPNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCCEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCcEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 35789988877 45455778888999998999999887543
No 102
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=75.38 E-value=5 Score=31.60 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=32.0
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEE-EEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKV-NWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V-~v~~~~~~ 115 (477)
.||++|+....+.|... +...+++.++.+.||+| .|+...++
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DG 55 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREG 55 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechH
Confidence 47888888766554333 66889999999999999 88885544
No 103
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=75.37 E-value=22 Score=26.39 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=65.9
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
+.+++++.+.. .....++...+..|. .+.......+....+.. .|++++-..- ...-|..+++.+. ..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEE----PVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHhcCCC
Confidence 34677888763 456667777776654 34433332333444433 5777754431 3334666666664 46
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.|+|. .+.... ..+.+..|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~ii~------~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIV------ITGHGDVPMAVEAMKAGAVDFIEKPFE--DTVIIEAIERASE 120 (126)
T ss_dssp CCEEE------EECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHT
T ss_pred CCEEE------EECCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHH
Confidence 78873 333322 223445677899999988 9999999988765
No 104
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=74.67 E-value=8.3 Score=28.21 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=63.8
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-----cC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (477)
+++++.+.. .....+....+..|. +|......++....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~iliv~~~~----~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 3 HILLLEEED----EAATVVCEMLTAAGF--KVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSS
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCC
Confidence 566777652 456677777776664 4544443333333333 36887765441 3445667777775 46
Q ss_pred CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|+|+ .+......+....|..+++..|-+ .+++.+.+..++.
T Consensus 76 ~~ii~------~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~ 117 (119)
T 2j48_A 76 PPLVL------FLGEPPVDPLLTAQASAILSKPLD--PQLLLTTLQGLCP 117 (119)
T ss_dssp CCCEE------EESSCCSSHHHHHHCSEECSSCST--THHHHHHHHTTCC
T ss_pred CCEEE------EeCCCCchhhhhcCHHHhccCCCC--HHHHHHHHHHHhc
Confidence 78773 222222224444566788888877 8899888876643
No 105
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=74.66 E-value=16 Score=28.48 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=61.9
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---CC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---QL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---G~ 383 (477)
.+++|+.+.. .....+....+..+-...|......++....+. ..|++++-... .+.-|+.+++.+.. .+
T Consensus 21 ~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 21 MKVLVAEDQS----MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred cEEEEEcCCH----HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCC
Confidence 5566666542 344455555554431112222222233333332 25777765441 44556667666554 56
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
|+|+ .+.... ..+.+..|..+++..|-+ .+++.++|..++..
T Consensus 96 ~ii~------ls~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 96 KVVV------VTTFKRAGYFERAVKAGVDAYVLKERS--IADLMQTLHTVLEG 140 (150)
T ss_dssp EEEE------EESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHTT
T ss_pred eEEE------EeCCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHcC
Confidence 7772 233222 233445677889999888 99999999998863
No 106
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=74.27 E-value=14 Score=29.18 Aligned_cols=109 Identities=8% Similarity=0.111 Sum_probs=60.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCCHHHHHH----hcCEEEEcCCCCCCcccHHHHHHHH---
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA--- 380 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~l~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma--- 380 (477)
.+++|+.+.. .....++...++.|. .+. .....++....+. ..|++++-... .+.-|+.+++.+.
T Consensus 37 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSV----FTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHC
T ss_pred eEEEEEeCCH----HHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhC
Confidence 4566666542 345555555555543 222 2222233333332 34777765441 3445666666554
Q ss_pred cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|||+ .+.... ..+.+..|..+++..|-+ .+++.++|.+++.
T Consensus 110 ~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 110 KNARVIM------ISALGKEQLVKDCLIKGAKTFIVKPLD--RAKVLQRVMSVFV 156 (157)
T ss_dssp TTCCEEE------EESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTTC
T ss_pred CCCcEEE------EeccCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 4678873 222222 223445677889999888 9999999988763
No 107
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=74.08 E-value=15 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=21.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|++||++.+. |.-.+..+--....+.+.|++|.+++..
T Consensus 1 m~~vL~v~aH--PDDe~l~~ggtia~~~~~G~~v~vv~lT 38 (227)
T 1uan_A 1 MLDLLVVAPH--PDDGELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESS--TTHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeC--CCcHHHhHHHHHHHHHhCCCcEEEEEEc
Confidence 4678888743 3222222332334445789998888743
No 108
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=74.03 E-value=19 Score=28.01 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=69.2
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....+++..++.+....|......++....+ ...|++++-... .+.-|+.+++.+..
T Consensus 14 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHP----LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSH----HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCH----HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 557888888763 35666777777765211122222223333333 236887765442 44556667766653
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..|||+ .+.... ..+.+..|..+++..|-+ .+++.++|..++..
T Consensus 89 ~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 89 PTRVLL------ISAHDEPAIVYQALQQGAAGFLLKDST--RTEIVKAVLDCAKG 135 (152)
T ss_dssp SCEEEE------EESCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CCeEEE------EEccCCHHHHHHHHHcCCCEEEecCCC--HHHHHHHHHHHHcC
Confidence 567772 233222 123455678899999988 99999999999874
No 109
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=74.02 E-value=27 Score=26.60 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=68.5
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---hcCEEEEcCCCCCC-cccHHHHHHHH--c
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA--F 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---~aDv~v~pS~~~~E-~~g~~~lEAma--~ 381 (477)
..+++|+.+.. .....+....++.|. .|......++....+. ..|++++-..- .+ .-|..+++.+. .
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhCC
Confidence 35778888763 466777777777764 3444333344444443 35888876541 23 45666666554 4
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .+.... ..+....|..+++..|-+ .+++.++|..++.
T Consensus 78 ~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVF------LTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALR 123 (140)
T ss_dssp CCCEEE------EESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCEEE------EECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 788883 222222 223444577889999988 9999999998875
No 110
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=74.00 E-value=11 Score=28.74 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=66.3
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc--CC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QL 383 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (477)
..+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+.. ..
T Consensus 4 ~~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDK----DNCQKLKGFLEEKGI--SIDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCKKIRNVTTC 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHccCCCC
Confidence 45778888762 356667777776554 3443333233333433 35887764431 23346667776653 57
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+|. .+.... ..+.+..|..+++..|-+ .+++.+++..++.
T Consensus 77 ~ii~------ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIVY------MTYINEDQSILNALNSGGDDYLIKPLN--LEILYAKVKAILR 120 (136)
T ss_dssp CEEE------EESCCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEE------EEcCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHH
Confidence 8772 222222 223445677899999988 9999999988765
No 111
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=73.75 E-value=15 Score=31.34 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=46.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------hh
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------QE 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-------~~ 143 (477)
.++||+++.+ |....+..+..++.+.+ ++|..+.++.+.... .+.....|++++.... ..
T Consensus 7 ~~~ri~vl~S-----G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~------l~~A~~~gIp~~~~~~~~~~~~~~~ 75 (215)
T 3kcq_A 7 KELRVGVLIS-----GRGSNLEALAKAFSTEESSVVISCVISNNAEARG------LLIAQSYGIPTFVVKRKPLDIEHIS 75 (215)
T ss_dssp CCEEEEEEES-----SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCBTTBCHHHHH
T ss_pred CCCEEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHH------HHHHHHcCCCEEEeCcccCChHHHH
Confidence 4568887773 33366788888886643 687766654433211 2345667888875432 22
Q ss_pred hHHHhcCCcEEEEcC
Q 011779 144 TINTALKADLIVLNT 158 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (477)
...+..+||+|++-.
T Consensus 76 ~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 76 TVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHTTCSEEEESS
T ss_pred HHHHHhCCCEEEEeC
Confidence 445678999999865
No 112
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=73.68 E-value=15 Score=31.25 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=45.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
+++|||+++.+. ....+..+..++.+ .+++|..+.++++. ...+.....|++++.....
T Consensus 10 ~~~~ri~vl~SG-----~gsnl~all~~~~~~~~~eI~~Vis~~~a-------~~~~~A~~~gIp~~~~~~~~~~~r~~~ 77 (215)
T 3da8_A 10 SAPARLVVLASG-----TGSLLRSLLDAAVGDYPARVVAVGVDREC-------RAAEIAAEASVPVFTVRLADHPSRDAW 77 (215)
T ss_dssp CSSEEEEEEESS-----CCHHHHHHHHHSSTTCSEEEEEEEESSCC-------HHHHHHHHTTCCEEECCGGGSSSHHHH
T ss_pred CCCcEEEEEEeC-----ChHHHHHHHHHHhccCCCeEEEEEeCCch-------HHHHHHHHcCCCEEEeCcccccchhhh
Confidence 356788887743 23567777777644 34687766655442 1234456778888765321
Q ss_pred ----hhHHHhcCCcEEEEcC
Q 011779 143 ----ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ----~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 78 d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEE
T ss_pred hHHHHHHHHhhCCCEEEEcC
Confidence 2344568999998854
No 113
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=73.68 E-value=26 Score=26.20 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=64.2
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---hcCEEEEcCCCCCC-cccHHHHHHHH---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA--- 380 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---~aDv~v~pS~~~~E-~~g~~~lEAma--- 380 (477)
..+++|+.+.. .....++......|. .|......++....+. ..|++++-... .+ .-|+.+++.+.
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 5 AVTILLADDEA----ILLLDFESTLTDAGF--LVTAVSSGAKAIEMLKSGAAIDGVVTDIRF-CQPPDGWQVARVAREID 77 (132)
T ss_dssp SCEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCCEEEEESCC-SSSSCHHHHHHHHHHHC
T ss_pred CceEEEEcCcH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHcCCCCCEEEEeeeC-CCCCCHHHHHHHHHhcC
Confidence 46778888763 456667777776664 3444333344444443 36888765441 33 45666666654
Q ss_pred cCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 381 FQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..+|+|+ .+..... .+.+.. .+++..|-+ .+++.++|.+++..
T Consensus 78 ~~~~ii~------~s~~~~~~~~~~~~~~--~~~l~kP~~--~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 78 PNMPIVY------ISGHAALEWASNGVPD--SIILEKPFT--SAQLITAVSQLLNA 123 (132)
T ss_dssp TTCCEEE------EESSCCTTHHHHSCTT--CEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CCCCEEE------EeCCccHHHHHhhcCC--cceEeCCCC--HHHHHHHHHHHHhc
Confidence 3678873 2222221 112222 368888887 99999999888763
No 114
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=73.57 E-value=24 Score=27.58 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=69.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH----
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 380 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---- 380 (477)
...+++|+.+.. .....+++..++.|. .|......++....+.. .|++++-..- .+.-|+.+++.+.
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (154)
T 3gt7_A 6 RAGEILIVEDSP----TQAEHLKHILEETGY--QTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPD 78 (154)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCC
Confidence 346788888763 466777777777664 34433333344444433 6888776542 4455777777775
Q ss_pred -cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 -FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 -~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|+|+ .+.... ..+.+..|..+++..|-+ .+++.++|..++.
T Consensus 79 ~~~~pii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 79 LRTIPVIL------LTILSDPRDVVRSLECGADDFITKPCK--DVVLASHVKRLLS 126 (154)
T ss_dssp TTTSCEEE------EECCCSHHHHHHHHHHCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEE------EECCCChHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 3678883 232222 223445678899999988 9999999999876
No 115
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=72.93 E-value=20 Score=27.43 Aligned_cols=112 Identities=11% Similarity=-0.004 Sum_probs=70.8
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--------hcCEEEEcCCCCCCcccHHHHHHH
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--------AIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--------~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
..+++|+.+.. .....+++..++.+....|......++....+. ..|++++-... .+.-|..+++.+
T Consensus 7 ~~~ILivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDE----VDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCH----HHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSCHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 45678888763 466777888887775445666555555555554 36888865441 344567777777
Q ss_pred H-----cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 380 A-----FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 380 a-----~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
. ..+|+|+ .+.... ..+....|..+++..|-+ .+++.+++.....
T Consensus 82 ~~~~~~~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 82 RDDSSFTDIEVFV------LTAAYTSKDKLAFESLNIRGHLIKPLD--YGEAIKLFWILQS 134 (143)
T ss_dssp TTSGGGTTCEEEE------EESCCCHHHHHHHTTTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred HcCccccCCcEEE------EeCCCCHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHHH
Confidence 5 4678772 222222 223345577889999888 9999988765443
No 116
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=71.87 E-value=60 Score=29.63 Aligned_cols=215 Identities=12% Similarity=0.017 Sum_probs=101.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+...|.++.+.....-....+..+.+++.+.|+++.+.......... ... . ......++|
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------~-~~l~~~~vd 128 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPERE------EQL-------------V-ETMLRRRPE 128 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHH------HHH-------------H-HHHHHTCCS
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH------HHH-------------H-HHHHhCCCC
Confidence 44679999876543222355667777888999999887654322110 000 0 112245788
Q ss_pred EEEEcCcc-hhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCC
Q 011779 153 LIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 231 (477)
Q Consensus 153 iV~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 231 (477)
-|++.... ....+..+...++| ++...... .. .....+..+.........+++.+ . ...+
T Consensus 129 GiI~~~~~~~~~~~~~l~~~~iP-----vV~i~~~~-~~----------~~~~~V~~D~~~~~~~a~~~L~~-~--G~r~ 189 (355)
T 3e3m_A 129 AMVLSYDGHTEQTIRLLQRASIP-----IVEIWEKP-AH----------PIGHTVGFSNERAAYDMTNALLA-R--GFRK 189 (355)
T ss_dssp EEEEECSCCCHHHHHHHHHCCSC-----EEEESSCC-SS----------CSSEEEECCHHHHHHHHHHHHHH-T--TCCS
T ss_pred EEEEeCCCCCHHHHHHHHhCCCC-----EEEECCcc-CC----------CCCCEEEeChHHHHHHHHHHHHH-C--CCCe
Confidence 88775432 22223333333443 33221111 00 11112222222333333333332 2 3457
Q ss_pred eEEEecCCchhh-hhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 232 TYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 232 i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
+.++....+... ... .... -.+.-++.|++.+.......+.. ..+...+++.++.+ +.++..
T Consensus 190 I~~i~~~~~~~~~~~~-----R~~G-f~~al~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ll~-------~~~~~~ 252 (355)
T 3e3m_A 190 IVFLGEKDDDWTRGAA-----RRAG-FKRAMREAGLNPDQEIRLGAPPL----SIEDGVAAAELILQ-------EYPDTD 252 (355)
T ss_dssp EEEEEESSCTTSHHHH-----HHHH-HHHHHHHTTSCSCCEEEESCSSC----CHHHHHHHHHHHHH-------HCTTCC
T ss_pred EEEEccCcccChhHHH-----HHHH-HHHHHHHCCcCCCccEEEecCCC----CHHHHHHHHHHHHc-------CCCCCc
Confidence 777764332211 100 0011 12233445766554333322333 23444555666554 335566
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEccccC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKTL 348 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~ 348 (477)
.+++.++ ...-.+.+.+++.|+ ++.|.+.|+-+
T Consensus 253 ai~~~nD-----~~A~g~~~al~~~G~~vP~disvigfD~ 287 (355)
T 3e3m_A 253 CIFCVSD-----MPAFGLLSRLKSIGVAVPEQVSVVGFGN 287 (355)
T ss_dssp EEEESSH-----HHHHHHHHHHHHHTCCTTTTCEEECSSC
T ss_pred EEEECCh-----HHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 6777764 333345555666665 58899999853
No 117
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=71.75 E-value=6.3 Score=33.01 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=30.1
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHH-HHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFL-LRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~-L~~~G~~V~v~~~~ 113 (477)
||||+++..+...+|.. ..+..+++. |.+.|++|.++...
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 57899888766555544 666677888 88889999988744
No 118
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=70.83 E-value=33 Score=29.07 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=44.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------- 142 (477)
|||+++.+.. | ..+..+..++.+. +++|..+..+.+... ........|++++.....
T Consensus 1 ~ri~vl~Sg~---g--snl~ali~~~~~~~~~~~i~~Vis~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (212)
T 1jkx_A 1 MNIVVLISGN---G--SNLQAIIDACKTNKIKGTVRAVFSNKADAF------GLERARQAGIATHTLIASAFDSREAYDR 69 (212)
T ss_dssp CEEEEEESSC---C--HHHHHHHHHHHTTSSSSEEEEEEESCTTCH------HHHHHHHTTCEEEECCGGGCSSHHHHHH
T ss_pred CEEEEEEECC---c--HHHHHHHHHHHcCCCCceEEEEEeCCCchH------HHHHHHHcCCcEEEeCcccccchhhccH
Confidence 4677776432 2 4577788887765 578765554443321 234556789998764311
Q ss_pred --hhHHHhcCCcEEEEcC
Q 011779 143 --ETINTALKADLIVLNT 158 (477)
Q Consensus 143 --~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 70 ELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHGGGCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 1334568999999865
No 119
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=70.59 E-value=9.3 Score=33.40 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=32.6
Q ss_pred CCCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 71 FMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+.+|||+++..+...+|.. ..+..+++.+.+.|++|.++-..
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 45678999999877666655 55566788888889999988743
No 120
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=70.56 E-value=13 Score=34.25 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=66.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
...+.++.+|-=.- |....+.++.. .|+++++-+.+. ..+..++.+++++++ ++ .
T Consensus 21 ~~mirigiIG~G~i--g~~~~~~~~~~-----------~~~~~lvav~d~------~~~~a~~~a~~~g~~-~~-----y 75 (350)
T 4had_A 21 QSMLRFGIISTAKI--GRDNVVPAIQD-----------AENCVVTAIASR------DLTRAREMADRFSVP-HA-----F 75 (350)
T ss_dssp -CCEEEEEESCCHH--HHHTHHHHHHH-----------CSSEEEEEEECS------SHHHHHHHHHHHTCS-EE-----E
T ss_pred cCccEEEEEcChHH--HHHHHHHHHHh-----------CCCeEEEEEECC------CHHHHHHHHHHcCCC-ee-----e
Confidence 34578888885111 11223445443 388888866654 356677888888764 21 2
Q ss_pred CCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe
Q 011779 348 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV 404 (477)
Q Consensus 348 ~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v 404 (477)
+++.++++. .|+++..+- ...-.-.+.+|+..|++|++=+.. +.+.....+++
T Consensus 76 ~d~~ell~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhVl~EKPl--a~~~~ea~~l~ 130 (350)
T 4had_A 76 GSYEEMLASDVIDAVYIPLP--TSQHIEWSIKAADAGKHVVCEKPL--ALKAGDIDAVI 130 (350)
T ss_dssp SSHHHHHHCSSCSEEEECSC--GGGHHHHHHHHHHTTCEEEECSCC--CSSGGGGHHHH
T ss_pred CCHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHhcCCEEEEeCCc--ccchhhHHHHH
Confidence 677888865 688888876 444445678999999999943333 44444444433
No 121
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=70.35 E-value=5.1 Score=29.80 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=46.5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
-++++|.|.... -.-+.+++.+++.|++-.|.-.+ ..++......+|++++... =.+-..-++..+ .++|||
T Consensus 6 Ill~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~-~~~~~~~~~~~Dvil~~pq---v~~~~~~~~~~~~~~~v~vI 79 (106)
T 1e2b_A 6 IYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFP-ETLAGEKGQNADVVLLGPQ---IAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_dssp EEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEEC-SSSTTHHHHHCSEEEECTT---SGGGHHHHHHHSSSSCCCBC
T ss_pred EEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhccCCCEEEEccc---hhhhHHHHHHHhcCCCceEE
Confidence 456788886443 36678899999999864433333 4677778899999997765 223344455544 345555
No 122
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=70.12 E-value=33 Score=26.01 Aligned_cols=109 Identities=12% Similarity=0.020 Sum_probs=60.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-----c
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~ 381 (477)
.+++|+.+.. .....+.+..++. -.|......++....+. ..|++++-... .+.-|..+++.+. .
T Consensus 4 ~~iLivdd~~----~~~~~l~~~l~~~---~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (140)
T 3n53_A 4 KKILIIDQQD----FSRIELKNFLDSE---YLVIESKNEKEALEQIDHHHPDLVILDMDI-IGENSPNLCLKLKRSKGLK 75 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTT---SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHhc---ceEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHcCcccC
Confidence 4667777652 3455566666544 23443333333333332 35887765541 3444666666665 4
Q ss_pred CCCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
+.|+|+ .+... ...+.+..|..+++..|-+ .+++.++|..++..
T Consensus 76 ~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 76 NVPLIL------LFSSEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEIHLRT 122 (140)
T ss_dssp TCCEEE------EECC----CTTTTTTCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEE------EecCCCHHHHHHHHhcCCCeeeeCCCC--HHHHHHHHHHHHhh
Confidence 678873 22221 1223345577889999988 99999999988764
No 123
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.06 E-value=31 Score=25.54 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-----cC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (477)
+++++.+.+ .....+....++.|. .|.......+..+.+. ..|++++-..- .+.-|+.+++.+. ..
T Consensus 4 ~ILivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~al~~l~~~~~dlvllD~~~-p~~~g~~~~~~l~~~~~~~~ 76 (122)
T 3gl9_A 4 KVLLVDDSA----VLRKIVSFNLKKEGY--EVIEAENGQIALEKLSEFTPDLIVLXIMM-PVMDGFTVLKKLQEKEEWKR 76 (122)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHTTBCCSEEEECSCC-SSSCHHHHHHHHHTSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEeccC-CCCcHHHHHHHHHhcccccC
Confidence 456666642 345566666666654 3433332233333333 25777765441 4455777888774 35
Q ss_pred CCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.|+|+ .|..+.. .+....|..+++..|-+ .+++.+.+.+++.
T Consensus 77 ~pii~------~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 77 IPVIV------LTAKGGEEDESLALSLGARKVMRKPFS--PSQFIEEVKHLLN 121 (122)
T ss_dssp SCEEE------EESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCEEE------EecCCchHHHHHHHhcChhhhccCCCC--HHHHHHHHHHHhc
Confidence 78873 3333322 22345677899999988 9999999988764
No 124
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=69.96 E-value=28 Score=26.19 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=69.5
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh---cCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
..+++|+.+.. .....++...++.|. .|.......+....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 79 (136)
T 3hdv_A 7 RPLVLVVDDNA----VNREALILYLKSRGI--DAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASER 79 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--CEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CCeEEEECCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcCC
Confidence 46788888763 466777777777765 34443333333333332 5777765442 45567777777754
Q ss_pred -CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
.+|+|. .+.... ..+.+..|..+++..|-+ .+++.++|.++....
T Consensus 80 ~~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 80 AALSIIV------VSGDTDVEEAVDVMHLGVVDFLLKPVD--LGKLLELVNKELKIG 128 (136)
T ss_dssp TTCEEEE------EESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC--
T ss_pred CCCCEEE------EeCCCChHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHhcCc
Confidence 367772 233222 223445678899999988 999999999987643
No 125
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=69.81 E-value=6.1 Score=29.65 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=29.4
Q ss_pred cEEEEEeccCCCC-chhhHHHHHHHHHHhC-Cc-EEEEEecCCC
Q 011779 75 KLVLLVSHELSLS-GGPLLLMELAFLLRGV-GT-KVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~-G~-~V~v~~~~~~ 115 (477)
||++++....+.+ ........++..+.+. |+ +|.|+...++
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 5777777665443 2225578899999988 99 9999885544
No 126
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=69.38 E-value=34 Score=25.83 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---hcCEEEEcCCCCCCcccHHHHHHHHc--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF-- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---~aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (477)
+..+++++.+.. .....+....++.|. .|.......+....+. ..|++++-... .+.-|+.+++.+..
T Consensus 14 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 14 QPFRVTLVEDEP----SHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHHHHHHHTTSS
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 567788888763 356667777776654 3444333333333333 36888765441 34456777777754
Q ss_pred -CCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 -QLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 -G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|+ .+ ....... ..--..+++..|-+ .+++...+..++..
T Consensus 87 ~~~~ii~------ls~~~~~~~~-~~~~~~~~l~KP~~--~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 87 KQPSVLI------LTTGRHELIE-SSEHNLSYLQKPFA--ISELRAAIDYHKPS 131 (138)
T ss_dssp SCCEEEE------EESCC--CCC-CSSSCEEEEESSCC--HHHHHHHHHHTCCC
T ss_pred CCCCEEE------EECCCCCHHH-HHHHHHheeeCCCC--HHHHHHHHHHHHHh
Confidence 577773 22 2222111 11015678888887 99999999887764
No 127
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=69.08 E-value=23 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-----hhHH
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----ETIN 146 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-----~~~~ 146 (477)
|.+|+|+++. |....=..+++.|.+.||+|.+++.......... .....+...++.++..... ....
T Consensus 8 M~~~~IlVtG------atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~--~~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 8 SPKGRVLIAG------ATGFIGQFVATASLDAHRPTYILARPGPRSPSKA--KIFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp ---CCEEEEC------TTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH--HHHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCCCeEEEEC------CCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHH--HHHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 5567787664 2224556778888899999999986543222111 1122334567777654332 2333
Q ss_pred HhcCCcEEEEcC
Q 011779 147 TALKADLIVLNT 158 (477)
Q Consensus 147 ~~~~~DiV~~~~ 158 (477)
+..++|+|+...
T Consensus 80 ~~~~~d~Vi~~a 91 (346)
T 3i6i_A 80 KEHEIDIVVSTV 91 (346)
T ss_dssp HHTTCCEEEECC
T ss_pred hhCCCCEEEECC
Confidence 444899987754
No 128
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=69.07 E-value=30 Score=26.84 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=65.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
..+++|+.+.. .....+....++.|. .|......++....+.. .|++++-... .+.-|+.+++.+. ..
T Consensus 14 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 14 RPEILLVDSQE----VILQRLQQLLSPLPY--TLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTSSC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CceEEEECCCH----HHHHHHHHHhcccCc--EEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCC
Confidence 35667776652 345566666666553 34433333333333332 5777765542 4445666666654 46
Q ss_pred CCEEeeccccccccCCCc---eEEeecC-CceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 383 LPVLLQKCLYQGTAAGGT---TEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~---~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
+|+|+ .+..... .+.+..| ..+++..|-+ .+++..+|..++..
T Consensus 87 ~~ii~------~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 87 TTRIL------LTGDPDLKLIAKAINEGEIYRYLSKPWD--DQELLLALRQALEH 133 (153)
T ss_dssp SEEEE------ECCCCCHHHHHHHHHTTCCSEEECSSCC--HHHHHHHHHHHHHH
T ss_pred CeEEE------EECCCCHHHHHHHHhCCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 78772 2332221 2334456 6789999888 99999999998763
No 129
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=69.05 E-value=32 Score=25.45 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++++.+.. .....++...+..|.. .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~~~l~~~~~~ 77 (128)
T 1jbe_A 4 ELKFLVVDDFS----TMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELLKTIRAXXAM 77 (128)
T ss_dssp TCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHHHHHHC--CC
T ss_pred ccEEEEECCCH----HHHHHHHHHHHHcCCc-EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhccc
Confidence 45677887752 3566677777766542 3443333333333333 35888765441 34456778887764
Q ss_pred -CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|. .+.... ..+.+..|..+++..|-+ .+++.+++.+++.
T Consensus 78 ~~~~ii~------~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 78 SALPVLM------VTAEAKKENIIAAAQAGASGYVVKPFT--AATLEEKLNKIFE 124 (128)
T ss_dssp TTCCEEE------EESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCcEEE------EecCccHHHHHHHHHhCcCceeecCCC--HHHHHHHHHHHHH
Confidence 567772 232222 123345677899999888 9999999987753
No 130
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=68.82 E-value=7.9 Score=33.80 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCccEEEEEeccCC--------CCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELS--------LSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~--------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|.|+|||++..... +.|.+ .-+..-...|.+.|++|++++....
T Consensus 1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~ 53 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGG 53 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45678999987531 24555 4466778888999999999996543
No 131
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=68.62 E-value=11 Score=28.78 Aligned_cols=112 Identities=9% Similarity=0.027 Sum_probs=69.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHHHH---hcCEEEEcCCCCC-CcccHHHHHHHHc-
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWG-ECFGRITIEAMAF- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~~~---~aDv~v~pS~~~~-E~~g~~~lEAma~- 381 (477)
..+++|+.+.. .....++...++ .|. .|......++....+. ..|++++-..- . +.-|+.+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFE----YEREKTKIIFDNIGEY--DFIEVENLKKFYSIFKDLDSITLIIMDIAF-PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHHCCC--EEEEECSHHHHHTTTTTCCCCSEEEECSCS-SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhccCc--cEEEECCHHHHHHHHhcCCCCcEEEEeCCC-CCCCcHHHHHHHHHhC
Confidence 35677887752 456677777777 554 3443333333333333 36888876541 3 3446667776554
Q ss_pred ----CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 382 ----QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 382 ----G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
.+|+|+ .+.... ..+.+..|..+++..|-+ .+++.++|..++...
T Consensus 77 ~~~~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVII------ATKSDNPGYRHAALKFKVSDYILKPYP--TKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEE------EESCCCHHHHHHHHHSCCSEEEESSCC--TTHHHHHHHHHHCC-
T ss_pred cccCCCCEEE------EeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHhc
Confidence 788883 232222 123345677899999988 899999999988753
No 132
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=68.57 E-value=62 Score=28.53 Aligned_cols=226 Identities=7% Similarity=-0.026 Sum_probs=109.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+.++|.++.+.....-....+..+.+++.+.|+++.++.......... ... .+. ....++|
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-----~~~-------------i~~-l~~~~vd 63 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQ-----ITV-------------LEQ-AIAKNPA 63 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHH-----HHH-------------HHH-HHHHCCS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHH-----HHH-------------HHH-HHHhCCC
Confidence 456899988775443333556677777888999999865332221110 000 111 2235899
Q ss_pred EEEEcCcch---hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCC
Q 011779 153 LIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 229 (477)
Q Consensus 153 iV~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (477)
.|++..... ...+..+...++| ++..-..... ......+..+.........+++.+.++ ..
T Consensus 64 giIi~~~~~~~~~~~~~~~~~~~iP-----vV~~~~~~~~----------~~~~~~V~~d~~~~g~~~~~~l~~~~~-g~ 127 (305)
T 3g1w_A 64 GIAISAIDPVELTDTINKAVDAGIP-----IVLFDSGAPD----------SHAHSFLGTNNYNAGMNAAYKMAELLD-GE 127 (305)
T ss_dssp EEEECCSSTTTTHHHHHHHHHTTCC-----EEEESSCCTT----------SCCSCEEECCHHHHHHHHHHHHHHHTT-TC
T ss_pred EEEEcCCCHHHHHHHHHHHHHCCCc-----EEEECCCCCC----------CceeEEECcCHHHHHHHHHHHHHHHhC-CC
Confidence 888765322 2233444444443 3332221111 011233333434444444444444332 23
Q ss_pred CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCce
Q 011779 230 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~ 309 (477)
.++.++. |.+... ........++.++ +.+++.+ ......+.. ..+...+++.++.+ ++|+.
T Consensus 128 ~~i~~i~-~~~~~~-----~~~R~~gf~~~l~-~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~l~-------~~~~~ 188 (305)
T 3g1w_A 128 GEVAVIT-LPNQLN-----HQERTTGFKETLE-AEFPAIE-VIAVEDGRG----DSLHSRRVAHQLLE-------DYPNL 188 (305)
T ss_dssp EEEEEEE-CTTCHH-----HHHHHHHHHHHHH-HHCTTEE-EEEEEECTT----CHHHHHHHHHHHHH-------HCTTE
T ss_pred cEEEEEe-CCCccc-----HHHHHHHHHHHHH-hhCCCCE-EEEEecCCC----CHHHHHHHHHHHHH-------hCCCc
Confidence 4566665 322110 0000111122222 2343221 222233433 44555566666554 45778
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCH--HHHHHhc
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV--APYLAAI 357 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l--~~~~~~a 357 (477)
..+++.++ .....+.+.+++.|+.+.|.+.|+-... ...+..-
T Consensus 189 ~ai~~~~d-----~~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~~ 233 (305)
T 3g1w_A 189 AGIFATEA-----NGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEG 233 (305)
T ss_dssp EEEEESSH-----HHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTT
T ss_pred eEEEECCC-----cchhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcC
Confidence 88888765 4455566777888887778888875332 4445443
No 133
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=68.25 E-value=4.7 Score=39.33 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+++|+++. ++..|--.-+..|++.|.++||+|++++..
T Consensus 7 ~~~~vl~~p--~p~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 7 RKPHVVMIP--YPVQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp -CCEEEEEC--CSSHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCEEEEec--CccchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 346788776 332344477999999999999999999843
No 134
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=68.04 E-value=7.4 Score=29.53 Aligned_cols=43 Identities=7% Similarity=-0.034 Sum_probs=32.1
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+|++|+....+.|... +-..+++.++...||+|.|+...++.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~DGV 44 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV 44 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehHHH
Confidence 35688888776665433 66789999999999999999865543
No 135
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=67.90 E-value=88 Score=30.03 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc---------------hHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------------TKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~---------------~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.+.++.+.+.+... ..+--+++|+|+|.-.. ....+..+.+++++ ++-+.+.|.
T Consensus 218 ~~~i~~~~~~~g~~---------~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~~~Vi~GD 286 (461)
T 4g65_A 218 SNHIRSVMSELQRL---------EKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL--ENTIVFCGD 286 (461)
T ss_dssp TTTHHHHHHHTTGG---------GSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC--TTSEEEESC
T ss_pred cchHHHHHHhhccc---------cccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC--CCceEEecc
Confidence 45666666655432 12334778888872100 01234455555554 345666776
Q ss_pred cCCHHHH----HHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC--CCceEEeecCCceeeecCCCCCH
Q 011779 347 TLTVAPY----LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA--GGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 347 ~~~l~~~----~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~--gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
-.+..-+ +..+|+++..+.. .|.-=++.+-|-.+|.+=+ .+.. ....++++.......+.| .
T Consensus 287 ~td~~~L~ee~i~~~D~~ia~T~~-De~Ni~~~llAk~~gv~kv-------Ia~vn~~~~~~l~~~~gid~visp----~ 354 (461)
T 4g65_A 287 AADQELLTEENIDQVDVFIALTNE-DETNIMSAMLAKRMGAKKV-------MVLIQRGAYVDLVQGGVIDVAISP----Q 354 (461)
T ss_dssp TTCHHHHHHTTGGGCSEEEECCSC-HHHHHHHHHHHHHTTCSEE-------EEECSCHHHHHHHCSSSSCEEECH----H
T ss_pred ccchhhHhhcCchhhcEEEEcccC-cHHHHHHHHHHHHcCCccc-------cccccccchhhhhhccccceeeCH----H
Confidence 5443322 6779999987762 4444456777888998877 4433 233444443333344443 3
Q ss_pred HHHHHHHHHHHh
Q 011779 421 TPLAKNIVKLAT 432 (477)
Q Consensus 421 ~~la~~i~~ll~ 432 (477)
...+..|.+.+.
T Consensus 355 ~~~a~~I~~~i~ 366 (461)
T 4g65_A 355 QATISALLTHVR 366 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 445666666554
No 136
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=67.88 E-value=6.9 Score=33.25 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=29.6
Q ss_pred CccEEEEEeccCC--CCchh-hHHHHHHHHHHhC--CcEEEEEecC
Q 011779 73 KSKLVLLVSHELS--LSGGP-LLLMELAFLLRGV--GTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~--~gG~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (477)
||||||++..+.. .++.. ..+..+++.+.+. |++|.++-..
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~ 48 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 48 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGG
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4578999987766 45544 4556777888776 8999998743
No 137
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=67.82 E-value=21 Score=27.79 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHHh---cCEEEEcCCCCCCcccHHHHHHHH---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA--- 380 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma--- 380 (477)
..+++|+.+.. .....++...++. |. ..|......++....+.. .|++++-... .+.-|+.+++.+.
T Consensus 3 ~~~iLivdd~~----~~~~~l~~~L~~~~g~-~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 3 LTVVLIVDDHH----LIRAGAKNLLEGAFSG-MRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFD 76 (154)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHHCTT-EEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHC
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhC
Confidence 35777887763 4566677777766 43 134444444555555544 6888765431 2334556666554
Q ss_pred cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 381 FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.++|+|+ .+.... ..+.+..|..+++..|-+ .+++.++|..++..
T Consensus 77 ~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVAL------ISGETDHELIRAALEAGADGFIPKSAD--PQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEE------C-----CHHHHHHHHTTCCBBCCTTSC--HHHHHHHHHHHHTT
T ss_pred CCCeEEE------EeCCCCHHHHHHHHHccCCEEEeCCCC--HHHHHHHHHHHHcC
Confidence 3678882 222221 123345677889998887 99999999998863
No 138
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=67.45 E-value=38 Score=25.66 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=62.8
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH------
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA------ 380 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma------ 380 (477)
.+++|+.+.. .....+....+..+. .+.......+....+. ..|++++-..- .+.-|+.+++.+.
T Consensus 11 ~~iLivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 11 LSVLIAEDND----ICRLVAAKALEKCTN--DITVVTNGLQALQAYQNRQFDVIIMDIQM-PVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHTTTCS--EEEEESSHHHHHHHHHHSCCSEEEECTTC-CSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--ceEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhhhhhc
Confidence 4677777652 345556666665543 3444443333333333 36888865431 3334666666664
Q ss_pred --cCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 --FQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 --~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
...|+|+ .+...........|..+++..|-+ .+++.++|..++.
T Consensus 84 ~~~~~~ii~------~s~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 129 (140)
T 3c97_A 84 NTKRASIIA------ITADTIDDDRPGAELDEYVSKPLN--PNQLRDVVLTCHS 129 (140)
T ss_dssp TCCCCCCEE------EESSCCSCCCCCSSCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCCceEEEE------EeCccchhHHHhCChhheEeCCCC--HHHHHHHHHHHhC
Confidence 3466762 222222222234455789999988 9999999988865
No 139
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=67.45 E-value=7.4 Score=37.45 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.||++|||++. +++ ....+++.+++.|++|.++...
T Consensus 3 ~m~~~kiLI~g------~g~-~a~~i~~aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 3 AMEIKSILIAN------RGE-IALRALRTIKEMGKKAICVYSE 38 (446)
T ss_dssp TTCCCEEEECC------CHH-HHHHHHHHHHHTTCEEEEEEEG
T ss_pred ccccceEEEEC------CCH-HHHHHHHHHHHcCCEEEEEEcC
Confidence 47778888854 333 6779999999999999988744
No 140
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=67.39 E-value=29 Score=26.14 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=69.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....++...++.+. .+......++....+. ..|++++-... .+.-|+.+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (137)
T 3hdg_A 6 VALKILIVEDDT----DAREWLSTIISNHFP--EVWSAGDGEEGERLFGLHAPDVIITDIRM-PKLGGLEMLDRIKAGGA 78 (137)
T ss_dssp -CCCEEEECSCH----HHHHHHHHHHHTTCS--CEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred cccEEEEEeCCH----HHHHHHHHHHHhcCc--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 346788888763 456667777776432 4544444344444433 36888876542 44556677766554
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..|+|. .+.... ..+.+..|..+++..|-+ .+++.++|.++++.
T Consensus 79 ~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 79 KPYVIV------ISAFSEMKYFIKAIELGVHLFLPKPIE--PGRLMETLEDFRHI 125 (137)
T ss_dssp CCEEEE------CCCCCCHHHHHHHHHHCCSEECCSSCC--HHHHHHHHHHHHHH
T ss_pred CCcEEE------EecCcChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHHH
Confidence 577772 233222 223455678899999988 99999999998763
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=67.06 E-value=8.6 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||+++..+. .|..+..+..+++.|.+.|++|.++...
T Consensus 1 M~ki~I~y~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 1 MSKVLIVFGSS-TGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp -CEEEEEEECS-SSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCeEEEEEECC-CchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 35777766442 3556688889999999999999988644
No 142
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=66.97 E-value=27 Score=29.64 Aligned_cols=74 Identities=8% Similarity=0.071 Sum_probs=46.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------- 141 (477)
++||+++.+ |....+..+..+..+ .+++|..+.++.+.... .+.....|++++....
T Consensus 5 ~~riavl~S-----G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~------~~~A~~~gIp~~~~~~~~~~~r~~~d~ 73 (215)
T 3tqr_A 5 PLPIVVLIS-----GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYG------LKRAQQADIPTHIIPHEEFPSRTDFES 73 (215)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHH------HHHHHHcCCCEEEeCccccCchhHhHH
Confidence 568887764 333567777777765 46888766655443211 2345667888876421
Q ss_pred -hhhHHHhcCCcEEEEcC
Q 011779 142 -QETINTALKADLIVLNT 158 (477)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||+|++-.
T Consensus 74 ~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 74 TLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 12344668999999865
No 143
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=66.92 E-value=27 Score=26.59 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=67.3
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
..+++|+.+.. .....++...++.|. .|.......+....+. ..|++++-.. .+.-|..+++.+. ..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~--~~~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 4 TPTVMVVDESR----ITFLAVKNALEKDGF--NVIWAKNEQEAFTFLRREKIDLVFVDVF--EGEESLNLIRRIREEFPD 75 (142)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHGGGTC--EEEEESSHHHHHHHHTTSCCSEEEEECT--TTHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhccCCCEEEEeCC--CCCcHHHHHHHHHHHCCC
Confidence 35677777652 456677777777664 3443333334344443 3687776542 4444555665553 36
Q ss_pred CCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 383 LPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
+|+|+ .+..... .+....|..+++..|-+ .+++.+.|..++...
T Consensus 76 ~pii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 76 TKVAV------LSAYVDKDLIINSVKAGAVDYILKPFR--LDYLLERVKKIISST 122 (142)
T ss_dssp CEEEE------EESCCCHHHHHHHHHHTCSCEEESSCC--HHHHHHHHHHHHHC-
T ss_pred CCEEE------EECCCCHHHHHHHHHCCcceeEeCCCC--HHHHHHHHHHHHhhc
Confidence 78873 2332222 23345577889999888 999999999988754
No 144
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=66.74 E-value=23 Score=26.30 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|.+++|+++.... .....+...|.+.|++|..+.
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 1 MSLQQALIVEDYQ------AAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp -CCEEEEEECSCH------HHHHHHHHHHHHTTEEEEEES
T ss_pred CCcceEEEEcCCH------HHHHHHHHHHHHcCCCEEEEC
Confidence 5677899887543 456677888888999877654
No 145
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=66.39 E-value=38 Score=25.50 Aligned_cols=110 Identities=12% Similarity=0.173 Sum_probs=65.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH-------hcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-------AIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~-------~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
.+++|+.+.. .....++...+..|.. .|.......+....+. ..|++++=-.- .+.-|+.+++.+..
T Consensus 3 ~~ILivdD~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~m-p~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNH----VNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQM-PKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC-SSSCHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCChHHHHHHHHh
Confidence 3566777652 3566677777665542 3443333233333333 35888864431 33346777776642
Q ss_pred ----CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 ----QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 ----G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..|||+ .|..... .+....|..|++..|-+ .+++.+++.+++.
T Consensus 77 ~~~~~~~ii~------lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 126 (133)
T 2r25_B 77 DLGYTSPIVA------LTAFADDSNIKECLESGMNGFLSKPIK--RPKLKTILTEFCA 126 (133)
T ss_dssp HSCCCSCEEE------EESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHCT
T ss_pred hcCCCCCEEE------EECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 468773 3333322 23345677899999988 9999999988765
No 146
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=66.22 E-value=11 Score=28.24 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=34.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
-++++|.|.....=....+++.+++.|+...|...+ ..++...+..+|+++....
T Consensus 24 IlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~-~~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 24 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR-VNEIETYMDGVHLICTTAR 78 (113)
T ss_dssp EEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEEC-TTTTTTSTTSCSEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEec-HHHHhhccCCCCEEEECCc
Confidence 355677774332224788889999988863444433 2444445678998887665
No 147
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=66.05 E-value=37 Score=25.98 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=64.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH----
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 380 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---- 380 (477)
...+++|+.+.. .....++...++.|. .+......++....+. ..|++++-..- .+.-|+.+++.+.
T Consensus 13 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~m-p~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 13 RSMRMLVADDHE----ANRMVLQRLLEKAGH--KVLCVNGAEQVLDAMAEEDYDAVIVDLHM-PGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp --CEEEEECSSH----HHHHHHHHHHHC--C--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhchh
Confidence 346788887762 356667777776653 3443333334444443 36887765431 4445777777764
Q ss_pred ---cCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 ---FQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 ---~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|+|+ .+..... .+....|..+++..|-+ .+++.+++.++..
T Consensus 86 ~~~~~~pii~------~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 86 SGMRYTPVVV------LSADVTPEAIRACEQAGARAFLAKPVV--AAKLLDTLADLAV 135 (143)
T ss_dssp TTCCCCCEEE------EESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHC-
T ss_pred ccCCCCeEEE------EeCCCCHHHHHHHHHcChhheeeCCCC--HHHHHHHHHHHHH
Confidence 2368872 2222221 23344577899999988 9999999998764
No 148
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=66.03 E-value=9.4 Score=29.82 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=31.7
Q ss_pred ccEEEEEeccCCCCc-hhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+|++|+....+.|. ..+...+++..+...|++|.|+...++
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DG 47 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDG 47 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHH
Confidence 346888886665554 336688999999999999999986554
No 149
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=65.85 E-value=17 Score=30.98 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=43.2
Q ss_pred CccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHH
Q 011779 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (477)
Q Consensus 68 ~~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 147 (477)
.+.+|++|||.++. ....-..++..|.+.|++|.++....+.... ......|+...... ...
T Consensus 17 ~~~~m~mmkI~IIG-------~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~-------~l~~~~g~~~~~~~----~~~ 78 (220)
T 4huj_A 17 NLYFQSMTTYAIIG-------AGAIGSALAERFTAAQIPAIIANSRGPASLS-------SVTDRFGASVKAVE----LKD 78 (220)
T ss_dssp CTTGGGSCCEEEEE-------CHHHHHHHHHHHHHTTCCEEEECTTCGGGGH-------HHHHHHTTTEEECC----HHH
T ss_pred chhhhcCCEEEEEC-------CCHHHHHHHHHHHhCCCEEEEEECCCHHHHH-------HHHHHhCCCcccCh----HHH
Confidence 34457778999886 2245667889999999999885533322111 11112233332211 112
Q ss_pred hcCCcEEEEcCcc
Q 011779 148 ALKADLIVLNTAV 160 (477)
Q Consensus 148 ~~~~DiV~~~~~~ 160 (477)
....|+|++..+.
T Consensus 79 ~~~aDvVilavp~ 91 (220)
T 4huj_A 79 ALQADVVILAVPY 91 (220)
T ss_dssp HTTSSEEEEESCG
T ss_pred HhcCCEEEEeCCh
Confidence 3578999987753
No 150
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=65.83 E-value=16 Score=32.39 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=30.4
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|+++--+. .+..--.+..++..|+|+|
T Consensus 65 ~dl~~ll~~~DVVIDfT~--p~a~~~~~~~al~~G~~vV 101 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL--PEGTLVHLDAALRHDVKLV 101 (272)
T ss_dssp CCHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEE
Confidence 678888999999998776 5655556778999999999
No 151
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=65.81 E-value=39 Score=25.18 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=63.5
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF----- 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~----- 381 (477)
.+++|+.+.. .....++...+ .+ -.|......++....+. ..|++++-... .+.-|..+++.+..
T Consensus 5 ~~ilivdd~~----~~~~~l~~~l~-~~--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 5 PKVLIVENSW----TMRETLRLLLS-GE--FDCTTAADGASGLQQALAHPPDVLISDVNM-DGMDGYALCGHFRSEPTLK 76 (133)
T ss_dssp CEEEEECSCH----HHHHHHHHHHT-TT--SEEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEcCCH----HHHHHHHHHHh-CC--cEEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhCCccC
Confidence 4677777652 34455555554 33 23444333333333333 36887765442 44556777776654
Q ss_pred CCCEEeeccccccccCCC--ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg--~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
++|+|+ .+.... ..+....|..+++..|-+ .+++.++|..++..
T Consensus 77 ~~pii~------~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 77 HIPVIF------VSGYAPRTEGPADQPVPDAYLVKPVK--PPVLIAQLHALLAR 122 (133)
T ss_dssp TCCEEE------EESCCC-----TTSCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEE------EeCCCcHhHHHHhhcCCceEEeccCC--HHHHHHHHHHHHhh
Confidence 678883 222211 123344567789999988 99999999998863
No 152
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=65.73 E-value=10 Score=33.77 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=29.6
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|||||+|..+...+|.. ..+..+++.|.+.|++|.++...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 46899998766555544 45556778888899999998844
No 153
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=65.71 E-value=33 Score=25.36 Aligned_cols=110 Identities=8% Similarity=0.045 Sum_probs=66.6
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF----- 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~----- 381 (477)
.+++|+.+.. .....+++..++.|. .|......++....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (127)
T 3i42_A 4 QQALIVEDYQ----AAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPMEK 76 (127)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCSS
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhccC
Confidence 5677777752 456777777777764 34444333444444433 5877765431 45557777777653
Q ss_pred CCCEEeeccccccccCCCc--eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGGT--TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~--~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|. .+..... .+.+..|..+++..|-+ .+++.+++......
T Consensus 77 ~~~ii~------~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 77 TSKFVA------VSGFAKNDLGKEACELFDFYLEKPID--IASLEPILQSIEGH 122 (127)
T ss_dssp CCEEEE------EECC-CTTCCHHHHHHCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred CCCEEE------EECCcchhHHHHHHHhhHHheeCCCC--HHHHHHHHHHhhcc
Confidence 477773 2222221 23344567789999988 99999999887653
No 154
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=65.44 E-value=9.7 Score=33.79 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=38.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
|+|+|++.. . | ..=..+++.|.++||+|++++..... ...+...++.++...... +. ..++|
T Consensus 4 m~~~ilVtG---a-G---~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~~D~~d-~~-~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFG---H-G---YTARVLSRALAPQGWRIIGTSRNPDQ---------MEAIRASGAEPLLWPGEE-PS-LDGVT 65 (286)
T ss_dssp -CCEEEEET---C-C---HHHHHHHHHHGGGTCEEEEEESCGGG---------HHHHHHTTEEEEESSSSC-CC-CTTCC
T ss_pred CcCcEEEEC---C-c---HHHHHHHHHHHHCCCEEEEEEcChhh---------hhhHhhCCCeEEEecccc-cc-cCCCC
Confidence 457787663 1 2 34557888999999999999854322 112223455555432211 11 45788
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 66 ~vi~~a 71 (286)
T 3ius_A 66 HLLIST 71 (286)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 876543
No 155
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=65.41 E-value=7.5 Score=34.80 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|.|++++.++..-.-.|-.....+|+..|+++|..|.++-.+.
T Consensus 1 M~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 1 MAETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp ---CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4456666665433223444778899999999999999987654
No 156
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=65.06 E-value=45 Score=25.66 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=70.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH----
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 380 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---- 380 (477)
.+.+++||-+.+ ..+..++...++.|.. .|.....-.+..+.+. ..|++++=-. -++--|+-+++.+-
T Consensus 11 k~~rILiVDD~~----~~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~-MP~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 11 KNMKILIVDDFS----TMRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWN-MPGMQGIDLLKNIRADEE 84 (134)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhCCC
Confidence 457788887753 4667777788887763 3433322222233333 3687775433 14445788888874
Q ss_pred -cCCCEEeeccccccccCCCce---EEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 -FQLPVLLQKCLYQGTAAGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 -~G~PvI~~~~~~~~~~~gg~~---e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|||+ .|..+... +..+.|.++++..|-+ +++|.+.|.++++
T Consensus 85 ~~~ipvI~------lTa~~~~~~~~~~~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLM------ITAEAKREQIIEAAQAGVNGYIVKPFT--AATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEE------EESSCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHCC
T ss_pred CCCCeEEE------EECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 4689884 34433332 2345688899999988 9999999988764
No 157
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=65.06 E-value=42 Score=25.32 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF----- 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~----- 381 (477)
.+++|+.+.. .....+....++.|. .|......++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 5 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~lr~~~~~~ 77 (136)
T 3t6k_A 5 HTLLIVDDDD----TVAEMLELVLRGAGY--EVRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCKRVRQHPLTK 77 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSGGGT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCcC
Confidence 4677777652 356666777766654 3433332233333333 35887765441 44457777777643
Q ss_pred CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|+ .|..+.. .+.+..|..+++..|-+ .+++.+.+..++..
T Consensus 78 ~~pii~------~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 78 TLPILM------LTAQGDISAKIAGFEAGANDYLAKPFE--PQELVYRVKNILAR 124 (136)
T ss_dssp TCCEEE------EECTTCHHHHHHHHHHTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CccEEE------EecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHhc
Confidence 578883 3333322 23345678899999988 99999999998864
No 158
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=64.88 E-value=43 Score=25.37 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (477)
...+++|+.+.. .....+....++. +.. .+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 8 EKMKVIIVEDEF----LAQQELSWLINTHSQME-IVGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLLAQNISQFA 81 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHHHHHHTTST
T ss_pred CceEEEEEcCCH----HHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHccC
Confidence 346788888763 3566666666655 321 1212222233333333 36888865541 34456777777764
Q ss_pred -CCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..|+|. .+... ...+.+..|..+++..|-+ .+++.+.|..++.
T Consensus 82 ~~~~ii~------~s~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 82 HKPFIVF------ITAWKEHAVEAFELEAFDYILKPYQ--ESRIINMLQKLTT 126 (143)
T ss_dssp TCCEEEE------EESCCTTHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCceEEE------EeCCHHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 344552 22222 2233445677899999888 9999999988875
No 159
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=64.76 E-value=37 Score=30.39 Aligned_cols=108 Identities=6% Similarity=-0.017 Sum_probs=62.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-- 346 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-- 346 (477)
...+++.-|... .++-..+++.|-++. ..++.+++++.........+.+.+++..+++|.. .|..+.-
T Consensus 26 ~g~l~iiGGged-k~~~~~i~~~~v~la--------gg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~ 95 (291)
T 3en0_A 26 QPAILIIGGAED-KVHGREILQTFWSRS--------GGNDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRD 95 (291)
T ss_dssp SCCEEEECSSCC-SSSCCHHHHHHHHHT--------TGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCS
T ss_pred CceEEEEECCCC-ccChHHHHHHHHHHc--------CCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecC
Confidence 344554444433 223344555554432 1245678887654333335677888888888873 5555532
Q ss_pred -----cCCHHHHHHhcCEEEEcCCC------CCCccc--HHHHHHHHcC-CCEE
Q 011779 347 -----TLTVAPYLAAIDVLVQNSQA------WGECFG--RITIEAMAFQ-LPVL 386 (477)
Q Consensus 347 -----~~~l~~~~~~aDv~v~pS~~------~~E~~g--~~~lEAma~G-~PvI 386 (477)
.+++.+.+..||+++++--. .....+ -.+-|+...| +|++
T Consensus 96 r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~ 149 (291)
T 3en0_A 96 RAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLA 149 (291)
T ss_dssp GGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEE
T ss_pred ccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEE
Confidence 24467789999999887531 011122 2467788899 8888
No 160
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=64.68 E-value=38 Score=30.78 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=50.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHh-cCCc
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA-LKAD 152 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~~~D 152 (477)
+|+|.|+. .||. =+..+|+.|.++|++|.+.-..... .....+...|+++..-.....+ . ..+|
T Consensus 4 ~~~i~~iG----iGg~--Gms~~A~~L~~~G~~V~~~D~~~~~-------~~~~~L~~~gi~v~~g~~~~~l--~~~~~d 68 (326)
T 3eag_A 4 MKHIHIIG----IGGT--FMGGLAAIAKEAGFEVSGCDAKMYP-------PMSTQLEALGIDVYEGFDAAQL--DEFKAD 68 (326)
T ss_dssp CCEEEEES----CCSH--HHHHHHHHHHHTTCEEEEEESSCCT-------THHHHHHHTTCEEEESCCGGGG--GSCCCS
T ss_pred CcEEEEEE----ECHH--HHHHHHHHHHhCCCEEEEEcCCCCc-------HHHHHHHhCCCEEECCCCHHHc--CCCCCC
Confidence 46777765 2332 2456889999999999998654322 1233455678888643222221 1 3689
Q ss_pred EEEEcC--cchhhHHHHHhhhCCC
Q 011779 153 LIVLNT--AVAGKWLDAVLKEDVP 174 (477)
Q Consensus 153 iV~~~~--~~~~~~~~~~~~~~~~ 174 (477)
+|+... +.....+..+...++|
T Consensus 69 ~vV~Spgi~~~~p~~~~a~~~gi~ 92 (326)
T 3eag_A 69 VYVIGNVAKRGMDVVEAILNLGLP 92 (326)
T ss_dssp EEEECTTCCTTCHHHHHHHHTTCC
T ss_pred EEEECCCcCCCCHHHHHHHHcCCc
Confidence 998865 2233444555555553
No 161
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=64.50 E-value=9.8 Score=31.21 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=27.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
++|||++..... .|+ ....++++.|.+.|++|+++.+...
T Consensus 4 m~k~IllgvTGs--~aa-~k~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 4 MGENVLICLCGS--VNS-INISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp -CCEEEEEECSS--GGG-GGHHHHHHHHTTTCSEEEEEECTGG
T ss_pred CCCEEEEEEeCH--HHH-HHHHHHHHHHHHCCCEEEEEECcCH
Confidence 446776665322 122 4588999999999999999885543
No 162
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=64.48 E-value=35 Score=25.86 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=63.7
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF----- 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~----- 381 (477)
.+++|+.+.. .....+....+..|. .|.......+....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (138)
T 3c3m_A 4 YTILVVDDSP----MIVDVFVTMLERGGY--RPITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLERIKTDPATR 76 (138)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHcCcccC
Confidence 4667777652 456667777776654 34433322333334433 5887765441 34457777877753
Q ss_pred CCCEEeeccccccccCCCceE-Eee--cCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGGTTE-IVV--NGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e-~v~--~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|+ .+....... ... .+..+++..|-+ .+++.++|..++..
T Consensus 77 ~~~ii~------ls~~~~~~~~~~~~~~~~~~~l~KP~~--~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 77 DIPVLM------LTAKPLTPEEANEYGSYIEDYILKPTT--HHQLYEAIEHVLAR 123 (138)
T ss_dssp TSCEEE------EESSCCCHHHHHHTTTTCSEEEECCCH--HHHHHHHHHHHHSC
T ss_pred CCCEEE------EECCCChHHHHHHhhcCHhheEeCCCC--HHHHHHHHHHHHHH
Confidence 578873 232222211 111 123588888887 89999999988764
No 163
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=64.35 E-value=11 Score=32.93 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=30.6
Q ss_pred ccEEEEEeccCC--------CCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELS--------LSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~--------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+|||++..... +.|.+ .-+..-...|.+.|++|+++++...
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 578999987631 13655 4466677889999999999996543
No 164
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=64.26 E-value=46 Score=30.66 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
+++.++++|-=. =| ..+++++.. .++++++.+-+. ..+..++.+++++++..+.. ..
T Consensus 5 ~~~~vgiiG~G~--ig-~~~~~~l~~-----------~~~~~lv~v~d~------~~~~~~~~a~~~~~~~~~~~---~~ 61 (362)
T 1ydw_A 5 TQIRIGVMGCAD--IA-RKVSRAIHL-----------APNATISGVASR------SLEKAKAFATANNYPESTKI---HG 61 (362)
T ss_dssp -CEEEEEESCCT--TH-HHHHHHHHH-----------CTTEEEEEEECS------SHHHHHHHHHHTTCCTTCEE---ES
T ss_pred CceEEEEECchH--HH-HHHHHHHhh-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCCCCCee---eC
Confidence 456777777411 11 234444432 267887755553 23455677777775322221 25
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
++.++++ ..|+++..+- .....-.+.+|+..|++|++
T Consensus 62 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~V~~ 100 (362)
T 1ydw_A 62 SYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKHILL 100 (362)
T ss_dssp SHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHCCCeEEE
Confidence 6778887 4899998876 44444567789999999994
No 165
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.19 E-value=36 Score=25.76 Aligned_cols=108 Identities=10% Similarity=0.233 Sum_probs=62.8
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (477)
+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. ..+|
T Consensus 6 ~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDST----SLAILYKQYVKDEPY--DIFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCT----THHHHHHHHTTTSSS--EEEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhcCc--eEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 567777653 355666666655543 3433332233333333 36888765431 3344666666664 3567
Q ss_pred EEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 385 VLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 385 vI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|. .+.... ..+.+..|..+++..|-+ .+++...|..++.
T Consensus 79 ii~------ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VII------ATAHGSVDLAVNLIQKGAEDFLEKPIN--ADRLKTSVALHLK 121 (137)
T ss_dssp EEE------EESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEE------EEecCcHHHHHHHHHCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 772 333222 123345577889999888 9999999988764
No 166
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=64.15 E-value=74 Score=27.78 Aligned_cols=216 Identities=8% Similarity=-0.039 Sum_probs=105.8
Q ss_pred CCccEEEEEecc-----CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHH
Q 011779 72 MKSKLVLLVSHE-----LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN 146 (477)
Q Consensus 72 ~~~~~Il~v~~~-----~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 146 (477)
.+..+|.++.+. ....-.......+.+++.+.|+++.++...... . . ... .....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~--~-~----~~~-------------~~~~~ 65 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEE--E-I----FNG-------------VVKMV 65 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHH--H-H----HHH-------------HHHHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCH--H-H----HHH-------------HHHHH
Confidence 345679999887 433333355667777888999999886533211 0 0 000 11223
Q ss_pred HhcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhh
Q 011779 147 TALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (477)
...++|.|++..... ...+..+...++ |++..-...... .....+..+.........+++.+ .
T Consensus 66 ~~~~vdgiIi~~~~~~~~~~~~l~~~~i-----PvV~~~~~~~~~----------~~~~~V~~D~~~~g~~a~~~L~~-~ 129 (292)
T 3k4h_A 66 QGRQIGGIILLYSRENDRIIQYLHEQNF-----PFVLIGKPYDRK----------DEITYVDNDNYTAAREVAEYLIS-L 129 (292)
T ss_dssp HTTCCCEEEESCCBTTCHHHHHHHHTTC-----CEEEESCCSSCT----------TTSCEEECCHHHHHHHHHHHHHH-T
T ss_pred HcCCCCEEEEeCCCCChHHHHHHHHCCC-----CEEEECCCCCCC----------CCCCEEEECcHHHHHHHHHHHHH-C
Confidence 346889888765332 223333344444 333322211110 01223333333333334444433 2
Q ss_pred ccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccC
Q 011779 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (477)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 305 (477)
...++.++....+...... .....++. -++.|++.....+. .+.. ..+...+++.++.+ +
T Consensus 130 --G~~~i~~i~~~~~~~~~~~-----R~~gf~~~-l~~~g~~~~~~~~~-~~~~----~~~~~~~~~~~~l~-------~ 189 (292)
T 3k4h_A 130 --GHKQIAFIGGGSDLLVTRD-----RLAGMSDA-LKLADIVLPKEYIL-HFDF----SRESGQQAVEELMG-------L 189 (292)
T ss_dssp --TCCCEEEEESCTTBHHHHH-----HHHHHHHH-HHHTTCCCCGGGEE-ECCS----SHHHHHHHHHHHHT-------S
T ss_pred --CCceEEEEeCcccchhHHH-----HHHHHHHH-HHHcCCCCChheEE-ecCC----CHHHHHHHHHHHHc-------C
Confidence 3346777764433221110 00111222 23346554333232 2332 34455566666554 4
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCC--CcEEEccccC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--DRVHFVNKTL 348 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~ 348 (477)
.++...+++.++ .....+.+.+++.|+. +.|.+.|+-.
T Consensus 190 ~~~~~ai~~~~d-----~~a~g~~~al~~~g~~vP~di~vig~d~ 229 (292)
T 3k4h_A 190 QQPPTAIMATDD-----LIGLGVLSALSKKGFVVPKDVSIVSFNN 229 (292)
T ss_dssp SSCCSEEEESSH-----HHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCCcEEEEcCh-----HHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 566777777765 3444566677777764 7888999853
No 167
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=64.04 E-value=31 Score=26.04 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=66.8
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCC-----CcccHHHHHHHH-
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWG-----ECFGRITIEAMA- 380 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~-----E~~g~~~lEAma- 380 (477)
.+++|+.+.. .....++...++.|. .|......++....+.. .|++++-... . +.-|..+++.+.
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~~-~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 4 GTIIIVDDNK----GVLTAVQLLLKNHFS--KVITLSSPVSLSTVLREENPEVVLLDMNF-TSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTTSS--EEEEECCHHHHHHHHHHSCEEEEEEETTT-TC-----CCHHHHHHHHHH
T ss_pred ceEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHHcCCCCEEEEeCCc-CCCCCCCccHHHHHHHHHh
Confidence 5677887763 456677777776654 44444433444444443 5777765431 2 334566666554
Q ss_pred --cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 381 --FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 381 --~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..+|+|+ .+.... ..+.+..|..+++..|-+ .+++.++|..++..
T Consensus 77 ~~~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 77 QYRDLPVVL------FTAYADIDLAVRGIKEGASDFVVKPWD--NQKLLETLLNAASQ 126 (140)
T ss_dssp HCTTCCEEE------EEEGGGHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHTC
T ss_pred hCcCCCEEE------EECCCCHHHHHHHHHcCchheeeCCCC--HHHHHHHHHHHHHh
Confidence 4688883 222222 223345577889999888 99999999998864
No 168
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=64.00 E-value=74 Score=27.74 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=104.2
Q ss_pred CCccEEEEEec-cCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 72 MKSKLVLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 72 ~~~~~Il~v~~-~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
.+..+|.++.+ .....-....+..+.+++.+.|+++.++......... ... .......+
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~--------------~~~l~~~~ 68 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCL------HLE--------------KGISKENS 68 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCG------GGC--------------GGGSTTTC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhH------HHH--------------HHHHhccC
Confidence 45567999987 4432223356777778888999999887643322111 000 01122457
Q ss_pred CcEEEEcCcchhh-HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCC
Q 011779 151 ADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 229 (477)
Q Consensus 151 ~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (477)
+|-|++....... .+......+ .|++..-... .....+..+.........+++.+. ..
T Consensus 69 vdgiIi~~~~~~~~~~~~~~~~~-----iPvV~~~~~~-------------~~~~~V~~D~~~~~~~a~~~L~~~---G~ 127 (289)
T 3g85_A 69 FDAAIIANISNYDLEYLNKASLT-----LPIILFNRLS-------------NKYSSVNVDNYKMGEKASLLFAKK---RY 127 (289)
T ss_dssp CSEEEESSCCHHHHHHHHHCCCS-----SCEEEESCCC-------------SSSEEEEECHHHHHHHHHHHHHHT---TC
T ss_pred CCEEEEecCCcccHHHHHhccCC-----CCEEEECCCC-------------CCCCEEEeCHHHHHHHHHHHHHHc---CC
Confidence 9999887643322 111111222 3444322211 112334444444444444444432 33
Q ss_pred CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCce
Q 011779 230 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~ 309 (477)
.++.++....+...... .....++ .-++.|++.+...+. .+. -..+...+++.++.+ +.++.
T Consensus 128 ~~i~~i~~~~~~~~~~~-----R~~gf~~-~l~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~-------~~~~~ 189 (289)
T 3g85_A 128 KSAAAILTESLNDAMDN-----RNKGFIE-TCHKNGIKISENHII-AAE----NSIHGGVDAAKKLMK-------LKNTP 189 (289)
T ss_dssp CBCEEEECCCSSHHHHH-----HHHHHHH-HHHHTTCBCCGGGEE-ECC----SSHHHHHHHHHHHTT-------SSSCC
T ss_pred CEEEEEeCCcccccHHH-----HHHHHHH-HHHHcCCCCChhhee-ccC----CCHHHHHHHHHHHHc-------CCCCC
Confidence 56777754322211110 0011122 223456554332232 333 244555566666654 45666
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
..+++.++ .....+.+.+++.|+ ++.|.+.|+-
T Consensus 190 ~ai~~~~d-----~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 190 KALFCNSD-----SIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SEEEESSH-----HHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred cEEEEcCC-----HHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 77777765 444556667777776 4788888874
No 169
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=63.88 E-value=36 Score=28.69 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=43.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------- 141 (477)
|||+++.+.. ...+..|...+.+. +++|..+.++++.... .......|++++.+..
T Consensus 1 ~riaVl~SG~-----Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~------~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (209)
T 1meo_A 1 ARVAVLISGT-----GSNLQALIDSTREPNSSAQIDIVISNKAAVAG------LDKAERAGIPTRVINHKLYKNRVEFDS 69 (209)
T ss_dssp CEEEEEESSS-----CTTHHHHHHHHHSTTCSCEEEEEEESSTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CeEEEEEECC-----chHHHHHHHHHhcCCCCcEEEEEEeCCCChHH------HHHHHHcCCCEEEECccccCchhhhhH
Confidence 4677766433 24566677776654 6898766655443322 3345677888864322
Q ss_pred -hhhHHHhcCCcEEEEcC
Q 011779 142 -QETINTALKADLIVLNT 158 (477)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 70 AIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 12334567999998865
No 170
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=63.41 E-value=29 Score=25.87 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....+.+..++.|. .+......++....+.. .|++++-... .+.-|+.+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQ----VFRSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 456788888763 456677777777764 34443333333344432 5887765431 34456666666543
Q ss_pred CCCEEeeccccccccCCCc---eEEeecCCceeeecCC-CCCHHHHHHHHHHHHhC
Q 011779 382 QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 433 (477)
.+|+|. .+..... .+.+..|..+++..|- + .+.+.+.+..++..
T Consensus 79 ~~~ii~------~t~~~~~~~~~~~~~~g~~~~l~KP~~~--~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 79 QTPVLV------ISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFACLYP 126 (130)
T ss_dssp CCCEEE------EECCCCHHHHHHHHHHCCSEEEESCC-----CHHHHHHHHHHC-
T ss_pred CCCEEE------EEcCCCHHHHHHHHHcCCCEEEeCCCCc--HHHHHHHHHHHhch
Confidence 577773 2332222 2345567888999887 6 88999999988753
No 171
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=63.05 E-value=14 Score=27.26 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|.+|||+++|...- |.+..+..+-+.+.++|.++.+......
T Consensus 1 M~mkkIll~Cg~G~--sTS~l~~k~~~~~~~~gi~~~i~a~~~~ 42 (106)
T 1e2b_A 1 MEKKHIYLFSSAGM--STSLLVSKMRAQAEKYEVPVIIEAFPET 42 (106)
T ss_dssp CCCEEEEEECSSST--TTHHHHHHHHHHHHHSCCSEEEEEECSS
T ss_pred CCCcEEEEECCCch--hHHHHHHHHHHHHHHCCCCeEEEEecHH
Confidence 56788999996543 3336677888889999999888775544
No 172
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=62.99 E-value=16 Score=28.23 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=65.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcC-CCCcEEEcccc-CCHHHHH---HhcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT-LTVAPYL---AAIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~-~~l~~~~---~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
+..+++|+.+.. .....++...++.| . .|...... +.+..+. ...|++++-..- .+.-|+.+++.+..
T Consensus 19 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 19 GMINILVASEDA----SRLAHLARLVGDAGRY--RVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAELAAIEKLSR 91 (146)
T ss_dssp GGCEEEEECSCH----HHHHHHHHHHHHHCSC--EEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHhhCCCe--EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHHHHHHHHHH
Confidence 456777877752 35666777777665 3 23322222 2233333 357888875541 34445666665543
Q ss_pred ---CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 ---QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 ---G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .+.... ..+.+..|..+++..|-+ .+++..+|..++.
T Consensus 92 ~~~~~~ii~------lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 140 (146)
T 4dad_A 92 LHPGLTCLL------VTTDASSQTLLDAMRAGVRDVLRWPLE--PRALDDALKRAAA 140 (146)
T ss_dssp HCTTCEEEE------EESCCCHHHHHHHHTTTEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred hCCCCcEEE------EeCCCCHHHHHHHHHhCCceeEcCCCC--HHHHHHHHHHHHh
Confidence 677773 233222 123345677889999888 9999999998875
No 173
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=62.98 E-value=28 Score=25.58 Aligned_cols=109 Identities=11% Similarity=0.080 Sum_probs=66.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCC-CcccHHHHHHHH-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA----- 380 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~-E~~g~~~lEAma----- 380 (477)
.+++++.+.. .....+....++.|. ++......++....+. ..|++++-... . +.-|..+++.+.
T Consensus 6 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~d~~~-~~~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDT----ALSATLRSALEGRGF--TVDETTDGKGSVEQIRRDRPDLVVLAVDL-SAGQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHHTC--EEEEECCHHHHHHHHHHHCCSEEEEESBC-GGGCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCc--eEEEecCHHHHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCccc
Confidence 4677777652 456667777776664 3443333333333333 36887765431 2 334666777764
Q ss_pred cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 381 FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..+|+| ...... ..+....|..+++..|-+ .+++.+.+..++..
T Consensus 79 ~~~~ii-------~~~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIV-------IIGNPDGFAQHRKLKAHADEYVAKPVD--ADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEE-------EEECGGGHHHHHHSTTCCSEEEESSCC--HHHHHHHHHHHHCC
T ss_pred cCCCEE-------EEecCCchhHHHHHHhCcchheeCCCC--HHHHHHHHHHHHcC
Confidence 468888 441111 223345577889999888 99999999887653
No 174
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=62.77 E-value=47 Score=30.15 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.++.++++|-=. =| ...++++.+ .+++.++-+-+. ..+..++.+++++.+. ..+
T Consensus 4 ~~~~igiiG~G~--~g-~~~~~~l~~-----------~~~~~l~av~d~------~~~~~~~~~~~~~~~~------~~~ 57 (330)
T 3e9m_A 4 DKIRYGIMSTAQ--IV-PRFVAGLRE-----------SAQAEVRGIASR------RLENAQKMAKELAIPV------AYG 57 (330)
T ss_dssp CCEEEEECSCCT--TH-HHHHHHHHH-----------SSSEEEEEEBCS------SSHHHHHHHHHTTCCC------CBS
T ss_pred CeEEEEEECchH--HH-HHHHHHHHh-----------CCCcEEEEEEeC------CHHHHHHHHHHcCCCc------eeC
Confidence 346677777411 11 234455443 277887755443 2344566677776531 237
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++ ..|+++..+- .....-.+.+|+..|++|+
T Consensus 58 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~vl 95 (330)
T 3e9m_A 58 SYEELCKDETIDIIYIPTY--NQGHYSAAKLALSQGKPVL 95 (330)
T ss_dssp SHHHHHHCTTCSEEEECCC--GGGHHHHHHHHHHTTCCEE
T ss_pred CHHHHhcCCCCCEEEEcCC--CHHHHHHHHHHHHCCCeEE
Confidence 7888888 7899888776 4444445788999999999
No 175
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=62.68 E-value=13 Score=34.78 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.++.|+++|-=.-.+. -+.++..+...+. ..++++++-+-+. ..+..++.+++++.+ ++ .+
T Consensus 24 kkirvgiIG~G~ig~~---H~~a~~~~~~~~~----~~~~~~lvav~d~------~~~~a~~~a~~~g~~-~~-----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKC---HALAWNAVKTVFG----DVERPRLVHLAEA------NAGLAEARAGEFGFE-KA-----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHHH---HHHHHTTHHHHHC----SSCCCEEEEEECC--------TTHHHHHHHHTCS-EE-----ES
T ss_pred CCccEEEEcCCHHHHH---HHHHHHhhhhhhc----cCCCcEEEEEECC------CHHHHHHHHHHhCCC-ee-----cC
Confidence 4577888874211222 2344443332222 3467888766653 345567778888764 11 26
Q ss_pred CHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++. .|+++..+- ...-.-.+++|+..|++|+
T Consensus 85 d~~ell~~~~iDaV~IatP--~~~H~~~a~~al~aGkhVl 122 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTP--NQFHAEMAIAALEAGKHVW 122 (393)
T ss_dssp CHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred CHHHHhcCCCCcEEEECCC--hHHHHHHHHHHHhcCCeEE
Confidence 77888864 688888876 4444556889999999999
No 176
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=62.30 E-value=47 Score=31.17 Aligned_cols=85 Identities=12% Similarity=0.006 Sum_probs=51.4
Q ss_pred CccEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
+.++|+++...... |-+.+++..++..+...|.+|+++++..-.................|..+......... ....
T Consensus 190 ~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~ea--v~~a 267 (399)
T 3q98_A 190 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEA--FKDA 267 (399)
T ss_dssp TTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--HTTC
T ss_pred CCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHH--hCCC
Confidence 34689888644322 33457899999999999999999997643322222211222233456665444333322 3578
Q ss_pred cEEEEcCc
Q 011779 152 DLIVLNTA 159 (477)
Q Consensus 152 DiV~~~~~ 159 (477)
|+|++...
T Consensus 268 DvVytd~W 275 (399)
T 3q98_A 268 DIVYPKSW 275 (399)
T ss_dssp SEEEECCC
T ss_pred CEEEecCc
Confidence 99998754
No 177
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.27 E-value=29 Score=30.59 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc
Q 011779 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (477)
Q Consensus 260 ~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (477)
++...+-.....+|++++.-.. -.-+.+.++++++++ .++.+.++|-|.... ..+.++++++..
T Consensus 98 Lk~~~~k~~~~rIIlf~ds~~~-~~~~~l~~lak~lkk---------~gI~v~vIgFG~~~~--n~~kLe~l~~~~ 161 (268)
T 4b4t_W 98 LKHRQNKVQHQRIVAFVCSPIS-DSRDELIRLAKTLKK---------NNVAVDIINFGEIEQ--NTELLDEFIAAV 161 (268)
T ss_dssp HHTCSCTTSEEEEEEEECSCCS-SCHHHHHHHHHHHHH---------HTEEEEEEEESSCCS--SCCHHHHHHHHH
T ss_pred HHhcccCCCceEEEEEECCCCC-CCHHHHHHHHHHHHH---------cCCEEEEEEeCCCcc--chHHHHHHHHHh
Confidence 3333333334456777765332 356677888887766 578888888764322 234566666654
No 178
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=61.57 E-value=23 Score=29.38 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
||++||+++... |.+ .-+......|.+.|++|.+++...+.. .....|+.+.+-...........
T Consensus 1 mm~~~v~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~----------v~~~~g~~v~~d~~l~~~~~~~~ 66 (197)
T 2rk3_A 1 MASKRALVILAK----GAEEMETVIPVDVMRRAGIKVTVAGLAGKDP----------VQCSRDVVICPDASLEDAKKEGP 66 (197)
T ss_dssp -CCCEEEEEECT----TCCHHHHHHHHHHHHHTTCEEEEEETTCSSC----------EECTTSCEECCSEEHHHHHTTCC
T ss_pred CCCCEEEEEECC----CCcHHHHHHHHHHHHHCCCEEEEEEcCCCCc----------cccCCCCEEeCCcCHHHcCCccC
Confidence 456788888742 222 345567778888999999998654311 01234555544333333212367
Q ss_pred CcEEEEcCc
Q 011779 151 ADLIVLNTA 159 (477)
Q Consensus 151 ~DiV~~~~~ 159 (477)
+|+|++-..
T Consensus 67 ~D~livpGG 75 (197)
T 2rk3_A 67 YDVVVLPGG 75 (197)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998754
No 179
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=61.52 E-value=12 Score=31.14 Aligned_cols=40 Identities=13% Similarity=-0.050 Sum_probs=29.5
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (477)
||||+++..+ ..|-....+..+++.+.+ .|++|.++....
T Consensus 1 Mmkilii~~S-~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MAKVLVLYYS-MYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -CEEEEEECC-SSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CCeEEEEEeC-CCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 3688888766 334445778888999998 899999987544
No 180
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=61.34 E-value=46 Score=24.91 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=62.8
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.. .....++...+..+-...+.......+....+. ..|++++-..- ...-|..+++.+. ...
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~l-p~~~g~~~~~~l~~~~~~~ 78 (133)
T 3b2n_A 4 TSLIIAEDQN----MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM-PGMTGLEVLAEIRKKHLNI 78 (133)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEECCCH----HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHHHCCCC
Confidence 4566776652 355666666665531111222222233333332 36888765431 3334666777664 357
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
|+|. .+.... ..+.+..|..|++..|-+ .+++.++|..++..
T Consensus 79 ~ii~------ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 79 KVII------VTTFKRPGYFEKAVVNDVDAYVLKERS--IEELVETINKVNNG 123 (133)
T ss_dssp EEEE------EESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHC-
T ss_pred cEEE------EecCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHcC
Confidence 7773 233322 233445677899999988 99999999888753
No 181
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=61.26 E-value=15 Score=28.48 Aligned_cols=43 Identities=7% Similarity=-0.030 Sum_probs=30.6
Q ss_pred CccEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 73 KSKLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
+++|++|+....+. +.+ .....++......||+|.|+...++-
T Consensus 14 ~~~kl~ii~~sgP~-~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV 58 (134)
T 3mc3_A 14 QXXXILIVVTHGPE-DLDRTYAPLFMASISASMEYETSVFFMIXGP 58 (134)
T ss_dssp CCCEEEEEECCCGG-GTHHHHHHHHHHHHHHHTTCEEEEEECTTGG
T ss_pred ccceEEEEEccCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEeCcH
Confidence 34677777765432 333 56778888889999999998866553
No 182
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=61.24 E-value=8.2 Score=29.24 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=41.1
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCCh---hhHHhhhhhhhhhcCcEEEeccc
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEE---DEVIYSLEHKMWDRGVQVISAKG 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~---~~~~~~~~~~~~~~g~~v~~~~~ 141 (477)
.+|++|+.....+.....+...+|....++| ++|.|+....+..- +.....+...+...|+.+.-+..
T Consensus 7 ~~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~~aC~~ 79 (117)
T 2fb6_A 7 NDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITIEACQD 79 (117)
T ss_dssp TSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEEEEHH
T ss_pred CCeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeEEEeHH
Confidence 3678888766544333345888999999999 79999985544321 11122233344556666655443
No 183
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=61.00 E-value=13 Score=31.39 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=30.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|||+++..+. .|-....+..+++.+.+.|++|.++....
T Consensus 5 ~mmkilii~~S~-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYSS-TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEECC-CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 357898887544 34444778888999999999999987544
No 184
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=61.00 E-value=44 Score=24.69 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=66.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF----- 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~----- 381 (477)
.+++++.+.. .....+....+..|.. .|......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 7 ~~ilivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 7 IKVLIVDDQV----TSRLLLGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQAVRANPATK 80 (129)
T ss_dssp CCEEEECSSH----HHHHHHHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHHHHTTCTTST
T ss_pred CeEEEEcCCH----HHHHHHHHHHHHCCCc-EEEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHHHHhcCcccc
Confidence 5677887762 3566677777766542 3444333334334443 35888765431 34456777877753
Q ss_pred CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..|+|. .+..+.. .+.+..|..+++..|-+ .+++.+++..++.
T Consensus 81 ~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFII------LTAQGDRALVQKAAALGANNVLAKPFT--IEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEE------CCSCCCHHHHHHHHHHTCSCEECCCSS--HHHHHHHHHHHHH
T ss_pred CCCEEE------EeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 567772 3333221 23345577889999888 9999999987754
No 185
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=60.92 E-value=95 Score=27.95 Aligned_cols=204 Identities=11% Similarity=-0.007 Sum_probs=97.4
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
.+..+|.++.+.....-....+..+.+++.+.|+++.++.... .. . .... -......++
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~-~------~~~~-------------~~~l~~~~v 120 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQ-A------QDVV-------------MESLISIQA 120 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HH-H------HHHH-------------HHHHHHHTC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hH-H------HHHH-------------HHHHHhCCC
Confidence 3456799998765332223556667777888999999887553 21 1 0000 011224578
Q ss_pred cEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCC
Q 011779 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 231 (477)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 231 (477)
|-|++... +. .+.....|++..-..... .....+..+.........+++.+ ....+
T Consensus 121 dGiIi~~~-----~~-----~~~~~~iPvV~~~~~~~~-----------~~~~~V~~D~~~~~~~a~~~L~~---~G~~~ 176 (333)
T 3jvd_A 121 AGIIHVPV-----VG-----SIAPEGIPMVQLTRGELG-----------PGFPRVLCDDEAGFFQLTESVLG---GSGMN 176 (333)
T ss_dssp SEEEECCC-----TT-----CCC-CCSCEEEECC---------------CCSCEEEECHHHHHHHHHHHHCC---SSSCE
T ss_pred CEEEEcch-----HH-----HHhhCCCCEEEECccCCC-----------CCCCEEEEChHHHHHHHHHHHHH---CCCCe
Confidence 88887654 11 111122344433222110 12233333333333444444332 23456
Q ss_pred eEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE
Q 011779 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (477)
+.++....+...... .....+ +.-++.|++ .+...+... .+...+++.++.+ ..+ ...
T Consensus 177 I~~i~~~~~~~~~~~-----R~~Gf~-~al~~~g~~----~~~~~~~~~----~~~~~~~~~~ll~-------~~~-~~a 234 (333)
T 3jvd_A 177 IAALVGEESLSTTQE-----RMRGIS-HAASIYGAE----VTFHFGHYS----VESGEEMAQVVFN-------NGL-PDA 234 (333)
T ss_dssp EEEEESCTTSHHHHH-----HHHHHH-HHHHHTTCE----EEEEECCSS----HHHHHHHHHHHHH-------TCC-CSE
T ss_pred EEEEeCCCCCccHHH-----HHHHHH-HHHHHCCCC----EEEecCCCC----HHHHHHHHHHHhc-------CCC-CcE
Confidence 766654422211110 001111 222334543 232224443 4444556666554 445 566
Q ss_pred EEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 312 VIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 312 ~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
+++.++ .....+.+.+++.|+ ++.|.+.|+.
T Consensus 235 i~~~nd-----~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 235 LIVASP-----RLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp EEECCH-----HHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred EEECCH-----HHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 777764 344455666777776 4789999985
No 186
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=60.82 E-value=13 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.017 Sum_probs=27.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|++++..-+.|| --.-.|+.|.++|++|.|+....
T Consensus 59 ~~v~VlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~~~~ 95 (246)
T 1jzt_A 59 KHVFVIAGPGNNGG---DGLVCARHLKLFGYNPVVFYPKR 95 (246)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCeEEEEEcCC
Confidence 37998887655554 34667899999999999987543
No 187
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=60.82 E-value=95 Score=27.95 Aligned_cols=212 Identities=10% Similarity=0.024 Sum_probs=100.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+...|.++.+.....-....+..+.+++.+.|+++.+.......... ... . ......++|
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------~-~~l~~~~vd 120 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQE------LQL-------------L-RAYLQHRPD 120 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHH------HHH-------------H-HHHHTTCCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH------HHH-------------H-HHHHcCCCC
Confidence 45679998876543333466777888889999999887654332110 000 0 112245788
Q ss_pred EEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCC
Q 011779 153 LIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 231 (477)
Q Consensus 153 iV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 231 (477)
-|++..... ...+..+...++ |++...... .. ....+..+.........+++.+. ...+
T Consensus 121 GiIi~~~~~~~~~~~~l~~~~i-----PvV~~~~~~-~~-----------~~~~V~~D~~~~~~~a~~~L~~~---G~~~ 180 (339)
T 3h5o_A 121 GVLITGLSHAEPFERILSQHAL-----PVVYMMDLA-DD-----------GRCCVGFSQEDAGAAITRHLLSR---GKRR 180 (339)
T ss_dssp EEEEECSCCCTTHHHHHHHTTC-----CEEEEESCC-SS-----------SCCEEECCHHHHHHHHHHHHHHT---TCCS
T ss_pred EEEEeCCCCCHHHHHHHhcCCC-----CEEEEeecC-CC-----------CCeEEEECHHHHHHHHHHHHHHC---CCCe
Confidence 877654222 222333333344 333321111 00 01122222222233333333322 3457
Q ss_pred eEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE
Q 011779 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (477)
+.++....+... .. ..... .+.-++.|++.....++..+.. ..+...+++.++.+ +.++...
T Consensus 181 I~~i~~~~~~~~-----~~-R~~Gf-~~al~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ll~-------~~~~~~a 242 (339)
T 3h5o_A 181 IGFLGAQLDERV-----MK-RLDGY-RAALDAADCRDAGLEWLDPQPS----SMQMGADMLDRALA-------ERPDCDA 242 (339)
T ss_dssp EEEEEESCCHHH-----HH-HHHHH-HHHHHHTTCCCGGGEEEECSCC----CHHHHHHHHHHHHH-------HCTTCCE
T ss_pred EEEEeCCCCccH-----HH-HHHHH-HHHHHHCCCCCCChheEecCCC----CHHHHHHHHHHHHc-------CCCCCcE
Confidence 777754322110 00 00111 2223345663333333333433 33444555665554 3356667
Q ss_pred EEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 312 VIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 312 ~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
+++.++ ...-.+.+.+++.|+ ++.|.+.|+.
T Consensus 243 i~~~nD-----~~A~g~~~al~~~G~~vP~disvvgfD 275 (339)
T 3h5o_A 243 LFCCND-----DLAIGALARSQQLGIAVPERLAIAGFN 275 (339)
T ss_dssp EEESSH-----HHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred EEECCh-----HHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 777765 344445566667765 4789999985
No 188
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=60.55 E-value=20 Score=33.11 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=44.5
Q ss_pred CCCccEEEEEeccCCCCchhhHHH-HHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHh
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLM-ELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~-~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 148 (477)
.|+++||.++.. |+ ... .++..|.+. |++|..++..... .........|++.+ .....+...
T Consensus 24 ~m~~~rigiIG~----G~---~g~~~~~~~l~~~~~~~l~av~d~~~~-------~~~~~a~~~g~~~~--~~~~~ll~~ 87 (350)
T 3rc1_A 24 NANPIRVGVIGC----AD---IAWRRALPALEAEPLTEVTAIASRRWD-------RAKRFTERFGGEPV--EGYPALLER 87 (350)
T ss_dssp --CCEEEEEESC----CH---HHHHTHHHHHHHCTTEEEEEEEESSHH-------HHHHHHHHHCSEEE--ESHHHHHTC
T ss_pred CCCceEEEEEcC----cH---HHHHHHHHHHHhCCCeEEEEEEcCCHH-------HHHHHHHHcCCCCc--CCHHHHhcC
Confidence 477789999874 22 222 355666665 7888766643321 11122233466654 555666666
Q ss_pred cCCcEEEEcCcchhh
Q 011779 149 LKADLIVLNTAVAGK 163 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (477)
.++|+|++.++....
T Consensus 88 ~~~D~V~i~tp~~~h 102 (350)
T 3rc1_A 88 DDVDAVYVPLPAVLH 102 (350)
T ss_dssp TTCSEEEECCCGGGH
T ss_pred CCCCEEEECCCcHHH
Confidence 789999998865543
No 189
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=60.03 E-value=21 Score=28.09 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=26.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.||+|++..-..+---.-.+..++..|+++||+|+|....
T Consensus 6 ~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 6 TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred ceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCH
Confidence 3567766532221111245778899999999999998743
No 190
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=59.71 E-value=67 Score=27.09 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=44.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------- 142 (477)
||||+++.+.. | .-+..|..+..+. ..+|.++.++.+.. .........|++++.....
T Consensus 2 m~riavl~Sg~---G--snl~ali~~~~~~~l~~eI~~Visn~~~a------~v~~~A~~~gIp~~~~~~~~~~~r~~~d 70 (211)
T 3p9x_A 2 MKRVAIFASGS---G--TNAEAIIQSQKAGQLPCEVALLITDKPGA------KVVERVKVHEIPVCALDPKTYPSKEAYE 70 (211)
T ss_dssp -CEEEEECCTT---C--HHHHHHHHHHHTTCCSSEEEEEEESCSSS------HHHHHHHTTTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEeCC---c--hHHHHHHHHHHcCCCCcEEEEEEECCCCc------HHHHHHHHcCCCEEEeChhhcCchhhhH
Confidence 46888777432 2 4577777776543 25776665544332 2344556778888643321
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 71 ~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 71 IEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 2334668999999865
No 191
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=59.45 E-value=90 Score=27.23 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=103.2
Q ss_pred CCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhc
Q 011779 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 149 (477)
.+..+|.++.+.... .-....+..+.+++.+.|+++.++......... .. ........
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-------~~-------------~~~~l~~~ 65 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSM-------VP-------------IRYILETG 65 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTT-------HH-------------HHHHHHHT
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHH-------HH-------------HHHHHHcC
Confidence 345679999886532 122355666777788899999887644321100 00 11223356
Q ss_pred CCcEEEEcCcc-hhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccC
Q 011779 150 KADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (477)
Q Consensus 150 ~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (477)
++|-|++.... ....+..+...++| ++..-..... .....+..+.........+++.+. .
T Consensus 66 ~vdgiIi~~~~~~~~~~~~l~~~~iP-----vV~i~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~---G 126 (288)
T 3gv0_A 66 SADGVIISKIEPNDPRVRFMTERNMP-----FVTHGRSDMG-----------IEHAFHDFDNEAYAYEAVERLAQC---G 126 (288)
T ss_dssp CCSEEEEESCCTTCHHHHHHHHTTCC-----EEEESCCCSS-----------CCCEEEEECHHHHHHHHHHHHHHT---T
T ss_pred CccEEEEecCCCCcHHHHHHhhCCCC-----EEEECCcCCC-----------CCCcEEEeCcHHHHHHHHHHHHHC---C
Confidence 88988776432 22233444444443 3332221111 112233333333334444444332 3
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
..++.++....+...... .....++.+ ++.|++.....+ ....-..+...+++.++.+ ..++
T Consensus 127 ~~~I~~i~~~~~~~~~~~-----R~~gf~~~l-~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-------~~~~ 188 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDH-----ARKGFNRGI-RDFGLTEFPIDA-----VTIETPLEKIRDFGQRLMQ-------SSDR 188 (288)
T ss_dssp CCEEEEECCCTTSHHHHH-----HHHHHHHHH-HHTTCEECCCCS-----CCTTSCHHHHHHHHHHHTT-------SSSC
T ss_pred CCeEEEEcCCcccchHHH-----HHHHHHHHH-HHcCCCcchhhe-----eccccchHHHHHHHHHHHh-------CCCC
Confidence 346666653322211100 001112222 233443221111 1223355566666776654 4566
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
...+++.++ .....+.+.+++.|+ ++.|.+.|+-
T Consensus 189 ~~ai~~~~d-----~~A~g~~~al~~~g~~vP~di~vig~d 224 (288)
T 3gv0_A 189 PDGIVSISG-----SSTIALVAGFEAAGVKIGEDVDIVSKQ 224 (288)
T ss_dssp CSEEEESCH-----HHHHHHHHHHHTTTCCTTTSCEEEEEE
T ss_pred CcEEEEcCc-----HHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 677777765 444556667777776 4788899974
No 192
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=59.23 E-value=11 Score=33.70 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=25.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
||||+. ||....=..|++.|.++||+|++++...
T Consensus 1 MkILVT------GatGfIG~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG------GGTGFIGTALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEE------CCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 677644 3444566789999999999999998653
No 193
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=59.00 E-value=95 Score=27.36 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=96.9
Q ss_pred CccEEEEEecc-----CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHH
Q 011779 73 KSKLVLLVSHE-----LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (477)
Q Consensus 73 ~~~~Il~v~~~-----~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 147 (477)
+..+|.++.+. ....-....+..+.+++.+.|+++.++....... . ... ......
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---~----~~~-------------~~~~l~ 80 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGD---L----YHE-------------VKTMIQ 80 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHH---H----HHH-------------HHHHHH
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChH---H----HHH-------------HHHHHH
Confidence 45679999877 2221122445566677788999998865432110 0 000 012233
Q ss_pred hcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 148 ALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 148 ~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
..++|-|++..... ...+..+...++| ++..-..... .....+..+.........+++.+.
T Consensus 81 ~~~vdgiIi~~~~~~~~~~~~l~~~~iP-----vV~i~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~-- 142 (305)
T 3huu_A 81 SKSVDGFILLYSLKDDPIEHLLNEFKVP-----YLIVGKSLNY-----------ENIIHIDNDNIDAAYQLTQYLYHL-- 142 (305)
T ss_dssp TTCCSEEEESSCBTTCHHHHHHHHTTCC-----EEEESCCCSS-----------TTCCEEECCHHHHHHHHHHHHHHT--
T ss_pred hCCCCEEEEeCCcCCcHHHHHHHHcCCC-----EEEECCCCcc-----------cCCcEEEeCHHHHHHHHHHHHHHC--
Confidence 46789888765322 2233333444443 3332221100 112333333333333344444332
Q ss_pred cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH-HHHHHhhccC
Q 011779 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES-LELIKEKKLE 305 (477)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l-~~~~~~~~~~ 305 (477)
...++.++....+...... .....++ .-++.|++... ++.+.... ..+++.++ .+ .
T Consensus 143 -G~~~I~~i~~~~~~~~~~~-----R~~Gf~~-~l~~~g~~~~~---~~~~~~~~------~~~~~~~~~l~-------~ 199 (305)
T 3huu_A 143 -GHRHILFLQESGHYAVTED-----RSVGFKQ-YCDDVKISNDC---VVIKSMND------LRDFIKQYCID-------A 199 (305)
T ss_dssp -TCCSEEEEEESSCBHHHHH-----HHHHHHH-HHHHTTCCCCE---EEECSHHH------HHHHC--------------
T ss_pred -CCCeEEEEcCCcccchhHH-----HHHHHHH-HHHHcCCCccc---EEecCcHH------HHHHHHHhhhc-------C
Confidence 3356777754333221110 0011122 22345665444 23444332 33444444 33 2
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEccccC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKTL 348 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~ 348 (477)
.++...+++.++ .....+.+.+++.|+ ++.|.+.|+-.
T Consensus 200 ~~~~~ai~~~nd-----~~A~g~~~al~~~g~~vP~di~vig~D~ 239 (305)
T 3huu_A 200 SHMPSVIITSDV-----MLNMQLLNVLYEYQLRIPEDIQTATFNT 239 (305)
T ss_dssp -CCCSEEEESSH-----HHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCCCEEEECCh-----HHHHHHHHHHHHcCCCCCcceEEEEECC
Confidence 355666777764 344456666777776 47899999853
No 194
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.67 E-value=95 Score=27.26 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=104.7
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
+.+|.++.+.....-.......+.+++.+.|+++.++... .... . ... .+.+. ..++|.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~-~----~~~-------------i~~l~-~~~vdg 60 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEK-T----LNA-------------IDSLA-ASGAKG 60 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHH-H----HHH-------------HHHHH-HTTCCE
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHH-H----HHH-------------HHHHH-HcCCCE
Confidence 3578888876532222244556667777889999877652 1111 0 000 11222 346898
Q ss_pred EEEcCcchh---hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccC--
Q 011779 154 IVLNTAVAG---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-- 228 (477)
Q Consensus 154 V~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-- 228 (477)
|++...... ..+..+...++ |++..-....... .........+..+.........+++.+.+|-.
T Consensus 61 iii~~~~~~~~~~~~~~~~~~~i-----PvV~~~~~~~~~~-----~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~ 130 (306)
T 8abp_A 61 FVICTPDPKLGSAIVAKARGYDM-----KVIAVDDQFVNAK-----GKPMDTVPLVMLAATKIGERQGQELYKEMQKRGW 130 (306)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTC-----EEEEESSCCBCTT-----SCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCchhhHHHHHHHHHCCC-----cEEEeCCCCCCcc-----ccccccccEEecChhHHHHHHHHHHHHHHHhcCC
Confidence 887653222 22333334333 3333221111000 00001122333333333343334444333322
Q ss_pred -CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC
Q 011779 229 -MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (477)
Q Consensus 229 -~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (477)
..++.++..|...... ........++.+ ++.|++....+....+. -..+...+++.++.+ ++|
T Consensus 131 ~~~~i~~~~~~~~~~~~----~~~R~~Gf~~~l-~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-------~~~ 194 (306)
T 8abp_A 131 DVKESAVMAITANELDT----ARRRTTGSMDAL-KAAGFPEKQIYQVPTKS----NDIPGAFDAANSMLV-------QHP 194 (306)
T ss_dssp CGGGEEEEEEECTTSHH----HHHHHHHHHHHH-HHHTCCGGGEEEEECSS----SSHHHHHHHHHHHHT-------TCT
T ss_pred CccceEEEEecCCCChH----HHHHHHHHHHHH-HhcCCCCcEEEeeccCC----CChHHHHHHHHHHHH-------hCC
Confidence 1367677533221110 000001112222 33455433333333333 344555566666654 456
Q ss_pred ceEE--EEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc-CCHHHHHHh
Q 011779 308 SVHA--VIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT-LTVAPYLAA 356 (477)
Q Consensus 308 ~~~l--~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~-~~l~~~~~~ 356 (477)
+..- +++++. .......+.+++.|+. +.|.+.|+- .....++..
T Consensus 195 ~~~a~~i~~~nD-----~~A~g~~~al~~~g~~v~di~vvG~D~~~~~~~~~~ 242 (306)
T 8abp_A 195 EVKHWLIVGMND-----STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 242 (306)
T ss_dssp TCSEEEEECSSH-----HHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHTS
T ss_pred CCceEEEEeCCc-----HHHHHHHHHHHHcCCCCCceEEEEeCcHHHHHHHHc
Confidence 6654 666654 3444566667788876 689999974 224445544
No 195
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=58.45 E-value=20 Score=32.03 Aligned_cols=37 Identities=11% Similarity=-0.100 Sum_probs=29.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|++|--|. .+..--.+..++..|+|+|
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vV 116 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHI 116 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEE
Confidence 578888899999997766 5554444667899999999
No 196
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=58.41 E-value=13 Score=30.86 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=29.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|+|+|++++.+...+...+.+.+.+..+.+.|++|.++..
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl 40 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHI 40 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEec
Confidence 4678999988877776666666666677778999998863
No 197
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=58.32 E-value=58 Score=24.69 Aligned_cols=110 Identities=6% Similarity=-0.000 Sum_probs=56.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
+++|+.+.. .....+.......+..-.+. ......+....+. ..|++++-..- .+.-|..+++.+. .+.
T Consensus 4 ~ILivdd~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~l~~~l~~~~~~~ 78 (141)
T 3cu5_A 4 RILIVDDEK----LTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRM-PRMDGIELVDNILKLYPDC 78 (141)
T ss_dssp EEEEECSCH----HHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTC
T ss_pred eEEEEeCCH----HHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCC
Confidence 567777652 23444554443211111222 2222223333333 36888765431 3345666666654 467
Q ss_pred CEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 384 PVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 384 PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+|+ .+... ...+.+..|..+++..|-+ .+++.++|..++.
T Consensus 79 ~ii~------ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 79 SVIF------MSGYSDKEYLKAAIKFRAIRYVEKPID--PSEIMDALKQSIQ 122 (141)
T ss_dssp EEEE------ECCSTTTCCC------CCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred cEEE------EeCCCcHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 8773 22222 2345566688899999888 9999999988764
No 198
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=58.15 E-value=16 Score=31.63 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCccEEEEEecc----CC----CCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHE----LS----LSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~----~~----~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|.|+|||++... +. +.|.+ .-+......|.+.|++|++++...+
T Consensus 1 m~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~ 53 (243)
T 1rw7_A 1 MAPKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK 53 (243)
T ss_dssp -CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCCceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 345789999864 22 13444 3455667778899999999996544
No 199
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=58.10 E-value=81 Score=26.26 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=169.4
Q ss_pred cEEEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-hhHHHhcCCc
Q 011779 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETINTALKAD 152 (477)
Q Consensus 75 ~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~D 152 (477)
|+|+++... ....|..++..+.-..+.+.||+|+++...+...... -...-....++++-.+-. +.+......|
T Consensus 2 mricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrt----sshdhksfsipvilakeydkalklvndcd 77 (401)
T 1xv5_A 2 MRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRT----SSHDHKSFSIPVILAKEYDKALKLVNDCD 77 (401)
T ss_dssp CEEEEEETTCCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTT----TSSSCTTTCEEECTTTCHHHHHHHHTSCS
T ss_pred ceEEEEeeccccccCceeeehhhhhhhhcCCcEEEEEEecccccccc----ccccCccccceeEehhhhHHHhhhhccCc
Confidence 678877654 4445777888888889999999999988554332110 001112234555444333 2333456899
Q ss_pred EEEEcCcchhhHH-------HHHhhhCCCccccceeeeeeecccccchhh--Hhhcccccccceeeehh---hHHHHHHH
Q 011779 153 LIVLNTAVAGKWL-------DAVLKEDVPRVLPNVLWWIHEMRGHYFKLD--YVKHLPLVAGAMIDSHV---TAEYWKNR 220 (477)
Q Consensus 153 iV~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~--~~~~~~~~~~~~~~s~~---~~~~~~~~ 220 (477)
+.++++..+...- ..++....|. ..++.+-|+..-....+. .....++++.++..+.. ....++++
T Consensus 78 iliinsvpatsvqeatinnykklldnikps--irvvvyqhdhsvlslrrnlgleetvrradvifshsdngdfnkvlmkew 155 (401)
T 1xv5_A 78 ILIINSVPATSVQEATINNYKKLLDNIKPS--IRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDNGDFNKVLMKEW 155 (401)
T ss_dssp EEEEEECCBTTSCHHHHHHHHHHHHHSCTT--SEEEEEECCCSHHHHTTBSSHHHHHHHCSEEEESCTTSHHHHTHHHHH
T ss_pred EEEEccCccchhHHHHHhhHHHHHhcCCCc--eEEEEEeccchhhhhhhhcChHHhhhhhceEEecCCCCcHHHHHHHhh
Confidence 9999874433211 1222222232 356666666432222111 11222445555554432 22223333
Q ss_pred hHhhhcc--CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCC---eEEEEEeecccCCCHHHHHHHHHHH
Q 011779 221 TRERLRI--KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED---LLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 221 ~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
+.+...+ +.+..-.++|- +|.-+ ...+|..+=-+... -+=-++||-...||.-.+.+.-.++
T Consensus 156 ypetvslfddieeaptvynf------qppmd-------ivkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekf 222 (401)
T 1xv5_A 156 YPETVSLFDDIEEAPTVYNF------QPPMD-------IVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKF 222 (401)
T ss_dssp SCSSCCSSSCCCCCCCEEEC------CCCBC-------HHHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHHHHHT
T ss_pred ccchhhhhcchhhCCceecc------CCCce-------eeeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhHHHHh
Confidence 2221111 11112222222 11111 12233333212222 2335789999999998888877776
Q ss_pred HHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--------------------c-CCHHHH
Q 011779 296 LELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------------T-LTVAPY 353 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--------------------~-~~l~~~ 353 (477)
.+ |.-+- ++-|-. .. |..- .+++.|++ ..+.|. . .++.+-
T Consensus 223 lk---------pagkstvmegle--rs-pafi----aikekgip--yeyygnreidkmnlapnqpaqildcyinsemler 284 (401)
T 1xv5_A 223 LK---------PAGKSTVMEGLE--RS-PAFI----AIKEKGIP--YEYYGNREIDKMNLAPNQPAQILDCYINSEMLER 284 (401)
T ss_dssp TT---------TTTCEEEEECCC--CS-HHHH----HHHHTTCC--EEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHH
T ss_pred cC---------ccchhhhhhhhh--cC-CceE----EEcccCCc--hhhcCcchhhhhcCCCCCcchhhhheecHHHHHH
Confidence 54 43222 333321 11 2222 23334442 233332 1 445666
Q ss_pred HHhcCEEEEcCCC----CCCcccHHHHHHHHcCCCEEeeccccccccCCCceE-------EeecCCceeeecCCCCCHHH
Q 011779 354 LAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE-------IVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 354 ~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e-------~v~~~~~G~l~~~~d~~~~~ 422 (477)
++.+.....-|.- -..+.-.+-+|--|||.-.|- --..|..-. +-.+...-+.++.+| .++
T Consensus 285 msksgfgyqlsklnqkylqrsleythlelgacgtipvf------wkstgenlkfrvdntpltshdsgiiwfdend--mes 356 (401)
T 1xv5_A 285 MSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVF------WKSTGENLKFRVDNTPLTSHDSGIIWFDEND--MES 356 (401)
T ss_dssp HHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEE------EHHHHHHSBCTTTCCBGGGSCCSCEEECTTC--HHH
T ss_pred hhhcCcccchHHHHHHHHHhhhhhheeecccccceeee------ecccCcceEEEecCCcccccCCceEEecCCc--hHH
Confidence 6766665554431 023456788999999975541 222221111 112222234567667 999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEI 451 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 451 (477)
--+.|.++-.|..++.+-.+.|++..-++
T Consensus 357 tferikelssdralydrerekayeflyqh 385 (401)
T 1xv5_A 357 TFERIKELSSDRALYDREREKAYEFLYQH 385 (401)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHHHhc
Confidence 99999999999999999889888876543
No 200
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=58.06 E-value=41 Score=30.76 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=47.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... .+.+..++..+...|.+|.++++..-..+..............|..+......... ....|
T Consensus 178 ~glkva~vGD~------~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 249 (340)
T 4ep1_A 178 KGIKLAYVGDG------NNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELA--VNEAD 249 (340)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHH--HTTCS
T ss_pred CCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHH--hCCCC
Confidence 45789988542 47899999999999999999997654433322222222223445544333333222 24688
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 250 Vvyt~~ 255 (340)
T 4ep1_A 250 FIYTDV 255 (340)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 888853
No 201
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=57.97 E-value=53 Score=30.31 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=57.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
+++.|+++|- + .-+...++.++. . ++++++-+-+. ..+..++.+++++... ...
T Consensus 25 ~~irvgiiG~-G-~~~~~~~~~~~~---~---------~~~~lvav~d~------~~~~a~~~a~~~~~~~------~~~ 78 (361)
T 3u3x_A 25 DELRFAAVGL-N-HNHIYGQVNCLL---R---------AGARLAGFHEK------DDALAAEFSAVYADAR------RIA 78 (361)
T ss_dssp -CCEEEEECC-C-STTHHHHHHHHH---H---------TTCEEEEEECS------CHHHHHHHHHHSSSCC------EES
T ss_pred cCcEEEEECc-C-HHHHHHHHHHhh---c---------CCcEEEEEEcC------CHHHHHHHHHHcCCCc------ccC
Confidence 3567888884 2 223333444443 1 67888766654 2455667777775321 126
Q ss_pred CHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 349 ~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
++.++++. .|+++..+- ...-.-.+.+|+..|++|++
T Consensus 79 ~~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~ 117 (361)
T 3u3x_A 79 TAEEILEDENIGLIVSAAV--SSERAELAIRAMQHGKDVLV 117 (361)
T ss_dssp CHHHHHTCTTCCEEEECCC--HHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCeEEE
Confidence 78888876 899888775 33334457899999999993
No 202
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=57.95 E-value=60 Score=30.65 Aligned_cols=85 Identities=14% Similarity=-0.003 Sum_probs=51.0
Q ss_pred CccEEEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
+.++|+++... ...|-+.+++..++..+...|.+|+++++..-.................|..+......... ....
T Consensus 187 ~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~ea--v~~A 264 (418)
T 2yfk_A 187 KGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEA--FKDA 264 (418)
T ss_dssp TTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHH--HTTC
T ss_pred CCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHH--hcCC
Confidence 35689988532 22243358999999999999999999997643322221111122233456555444433332 3579
Q ss_pred cEEEEcCc
Q 011779 152 DLIVLNTA 159 (477)
Q Consensus 152 DiV~~~~~ 159 (477)
|+|+....
T Consensus 265 DVVytd~W 272 (418)
T 2yfk_A 265 DVVYPKSW 272 (418)
T ss_dssp SEEEECCC
T ss_pred CEEEEccc
Confidence 99998643
No 203
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=57.86 E-value=39 Score=30.02 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+++|||+++..+...+|.. ..+..+++.+.+.|++|.++-...
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 4578999999887766655 455567888888999999987443
No 204
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=57.29 E-value=58 Score=24.38 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=67.5
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE-ccccCCHHHHHH--hcCEEEEcCCCCC-CcccHHHHHHHH--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA-- 380 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~l~~~~~--~aDv~v~pS~~~~-E~~g~~~lEAma-- 380 (477)
...+++|+.+.. .....++...++.|. .+.. ....++....+. ..|++++-... . +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~~-~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGR----LAAATLRIQLESLGY--DVLGVFDNGEEAVRCAPDLRPDIALVDIML-CGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBH----HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-CSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCH----HHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCCHHHHHHHHHhC
Confidence 456788888763 456677777777664 3442 333334334433 36888875441 2 234555555554
Q ss_pred cCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 FQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|+|+ .+..... .+.+..|..+++..|-+ .+++...|..++.
T Consensus 81 ~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 CNLPIIF------ITSSQDVETFQRAKRVNPFGYLAKPVA--ADTLHRSIEMAIH 127 (140)
T ss_dssp SCCCEEE------EECCCCHHHHHHHHTTCCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCCCEEE------EecCCCHHHHHHHHhcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 5788883 2333222 23345577889999888 9999999988875
No 205
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=57.00 E-value=20 Score=30.37 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
++|+|++-.... .| .....++++.|.+.|++|+++.+.
T Consensus 3 ~~k~IllgvTGa--ia-a~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 3 GPERITLAMTGA--SG-AQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp SCSEEEEEECSS--SC-HHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCCEEEEEEECH--HH-HHHHHHHHHHHHHCCCEEEEEECc
Confidence 446776655322 12 256889999999999999998854
No 206
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=56.88 E-value=58 Score=24.21 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=68.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---C
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 382 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---G 382 (477)
++++|+.+.. .....++...++.|. .+. .....++....+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 2 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHP----LAIAAIRNLLIKNDI--EILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCH----HHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCH----HHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCC
Confidence 4677777753 466777777777753 333 3333455555543 46888776542 44556777766653 5
Q ss_pred CCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 383 LPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.|+|. .+... ...+....|..+++..|-+ .+++.++|..++..
T Consensus 75 ~~ii~------~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIII------VSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEE------EECC---CTHHHHHHTTCSEEEEGGGC--THHHHHHHHHHHTT
T ss_pred CeEEE------EeCCCChHHHHHHHHhCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 67772 22222 1233445677899999987 89999999988763
No 207
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=56.84 E-value=55 Score=29.94 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... .+.+..++..+...|.+|.++++..-..+..............|..+....... .....|
T Consensus 174 ~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~---av~~aD 244 (339)
T 4a8t_A 174 EDCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGAD 244 (339)
T ss_dssp GGCEEEEESSC------CHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG---GGTTCS
T ss_pred CCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh---HHcCCC
Confidence 45789887643 488999999999999999999976544333222222222234454443333222 234678
Q ss_pred EEEE
Q 011779 153 LIVL 156 (477)
Q Consensus 153 iV~~ 156 (477)
+|++
T Consensus 245 vvyt 248 (339)
T 4a8t_A 245 FLYT 248 (339)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8886
No 208
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=56.78 E-value=32 Score=31.04 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=43.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh-HHhhhhhhhhhcCcEEEeccch-----hhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~g~~v~~~~~~-----~~~~~~ 148 (477)
|||+|+.. ..+...-.++|.+.||+|..+..+++..... ............|++++..... ....+.
T Consensus 1 mrivf~gt-------~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~ 73 (305)
T 2bln_A 1 MKTVVFAY-------HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (305)
T ss_dssp CEEEEEEC-------HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH
T ss_pred CEEEEEEc-------CHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHh
Confidence 56777653 2345555666777799987665443322110 0012344456678888654432 244567
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
.+||++++-.
T Consensus 74 ~~~Dliv~~~ 83 (305)
T 2bln_A 74 LSPDVIFSFY 83 (305)
T ss_dssp TCCSEEEEES
T ss_pred cCCCEEEEec
Confidence 8999998854
No 209
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=56.74 E-value=56 Score=30.12 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=46.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... .+.+..++..+...|.+|+++++..-..+..............|..+....... .....|
T Consensus 152 ~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~---av~~aD 222 (355)
T 4a8p_A 152 EDCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGAD 222 (355)
T ss_dssp GGCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG---GGTTCS
T ss_pred CCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH---HHcCCC
Confidence 45689887643 488999999999999999999976544333222222222234455543333322 234678
Q ss_pred EEEE
Q 011779 153 LIVL 156 (477)
Q Consensus 153 iV~~ 156 (477)
+|++
T Consensus 223 VVyt 226 (355)
T 4a8p_A 223 FLYT 226 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8886
No 210
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=56.64 E-value=23 Score=32.49 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=31.7
Q ss_pred CCCccEEEEEeccCCCCc-hhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 71 FMKSKLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.|+|++++++......+| +.+....+...|.+.|+++.+.....
T Consensus 21 ~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~ 65 (337)
T 2qv7_A 21 HMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK 65 (337)
T ss_dssp CSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS
T ss_pred ccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 455677888876554433 44667889999999999999887544
No 211
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=56.59 E-value=23 Score=33.05 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 325 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 325 ~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
.+..++.+++++.+. ...++.++++. .|+++..+- ...-.-.+.+|+..|++|+
T Consensus 56 ~~~a~~~a~~~~~~~------~~~~~~~ll~~~~iD~V~i~tp--~~~h~~~~~~al~~Gk~V~ 111 (383)
T 3oqb_A 56 AEKVEALAKRFNIAR------WTTDLDAALADKNDTMFFDAAT--TQARPGLLTQAINAGKHVY 111 (383)
T ss_dssp SHHHHHHHHHTTCCC------EESCHHHHHHCSSCCEEEECSC--SSSSHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHhCCCc------ccCCHHHHhcCCCCCEEEECCC--chHHHHHHHHHHHCCCeEE
Confidence 345567777777641 12678888876 788888776 4444556789999999999
No 212
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=56.48 E-value=14 Score=31.76 Aligned_cols=39 Identities=21% Similarity=-0.010 Sum_probs=30.4
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||+|..+..+++.. ..+..+++.|.+.|++|.++-..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 7899998776666654 55667788888889999999854
No 213
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=56.39 E-value=55 Score=23.84 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=62.2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-----C
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 382 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~-----G 382 (477)
+++|+.+.. .....++...+..|. .+.......+....+. ..|++++-..- .+.-|+.+++.+.. .
T Consensus 3 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (124)
T 1mb3_A 3 KVLIVEDNE----LNMKLFHDLLEAQGY--ETLQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKWLKEDDDLAH 75 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHHHHHSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHcCccccC
Confidence 456676652 356667777776654 3333322233333332 36887765431 34456777777653 5
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|+|+ .+.... ..+....|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 76 IPVVA------VTAFAMKGDEERIREGGCEAYISKPIS--VVHFLETIKRLLE 120 (124)
T ss_dssp SCEEE------EC------CHHHHHHHTCSEEECSSCC--HHHHHHHHHHHHS
T ss_pred CcEEE------EECCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 78872 222211 123344577899999888 9999999988765
No 214
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=56.24 E-value=72 Score=27.00 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=68.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc--CCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QLP 384 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~P 384 (477)
.+++|+.+.+ .....+....+..|. .|......++....+. ..|++++-..- .+.-|+.+++.+.. ++|
T Consensus 6 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~~lr~~~~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDA----SLAEMLTIVLRGEGF--DTAVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCRVLRADSGVP 78 (238)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCc
Confidence 4677777762 456667777776654 3544444444444443 36888765441 34456677776653 688
Q ss_pred EEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 385 VLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 385 vI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|+ .+.... ..+.+..|..|++..|-+ .+++.++|..++.
T Consensus 79 ii~------lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 79 IVM------LTAKTDTVDVVLGLESGADDYIMKPFK--PKELVARVRARLR 121 (238)
T ss_dssp EEE------EEETTCCSCHHHHHHTTCCEEEEESCC--HHHHHHHHHHHCC
T ss_pred EEE------EeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 883 232222 233445678899999988 9999999998865
No 215
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=56.15 E-value=1.1e+02 Score=26.97 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=107.1
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
.+..+|.++.+.....-.. ..+..+.+++.+.|+++.++......... .. .-......+
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-------~~-------------~~~~l~~~~ 70 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSERE-------VE-------------IWKMFQSHR 70 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHH-------HH-------------HHHHHHHTT
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH-------HH-------------HHHHHHhCC
Confidence 3456799998875433334 56778888899999999988754322100 00 011223457
Q ss_pred CcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
+|-|++........+. .......|++..-...... .....+..+.........+++.+ . ...
T Consensus 71 vdGiIi~~~~~~~~~~-----~~~~~~iPvV~~~~~~~~~----------~~~~~V~~D~~~~g~~a~~~L~~-~--G~~ 132 (301)
T 3miz_A 71 IDGVLYVTMYRRIVDP-----ESGDVSIPTVMINCRPQTR----------ELLPSIEPDDYQGARDLTRYLLE-R--GHR 132 (301)
T ss_dssp CSEEEEEEEEEEECCC-----CCTTCCCCEEEEEEECSST----------TSSCEEEECHHHHHHHHHHHHHT-T--TCC
T ss_pred CCEEEEecCCccHHHH-----HHHhCCCCEEEECCCCCCC----------CCCCEEeeChHHHHHHHHHHHHH-c--CCC
Confidence 8887765432221111 1111223444433322110 01233333333334444444433 2 335
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEe---ecccCCCHHHHHHHHHHHHHHHHhhccCcC
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN---SVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vG---rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (477)
++.++....+...... .....++ .-++.|++.+...+ +.+ ......+. +.+++.++.+ ..+
T Consensus 133 ~I~~i~~~~~~~~~~~-----R~~Gf~~-al~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~l~-------~~~ 196 (301)
T 3miz_A 133 RIGYIRLNPILLGAEL-----RLDAFRR-TTSEFGLTENDLSI-SLGMDGPVGAENNY--VFAAATEMLK-------QDD 196 (301)
T ss_dssp SEEEEECCTTSHHHHH-----HHHHHHH-HHHHHTCCGGGEEE-EECEESSTTSCEEC--HHHHHHHHHT-------STT
T ss_pred eEEEEecCccchhHHH-----HHHHHHH-HHHHcCCCCCcceE-EEcCCCCcCccccH--HHHHHHHHHc-------CCC
Confidence 6777764333221100 0011122 23345665444333 445 55556665 1234444433 446
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCC--CcEEEcccc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--DRVHFVNKT 347 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 347 (477)
+...+++.++ .....+.+.+++.|+. +.|.+.|+-
T Consensus 197 ~~~ai~~~~d-----~~A~g~~~al~~~g~~vP~di~vig~D 233 (301)
T 3miz_A 197 RPTAIMSGND-----EMAIQIYIAAMALGLRIPQDVSIVGFD 233 (301)
T ss_dssp CCSEEEESSH-----HHHHHHHHHHHTTTCCHHHHCEEECSB
T ss_pred CCcEEEECCH-----HHHHHHHHHHHHcCCCCCCCeeEEEeC
Confidence 6667777765 4455566777888874 778899985
No 216
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=56.15 E-value=56 Score=23.79 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (477)
+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 4 HIVIVEDEP----VTQARLQSYFTQEGY--TVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHTTCCCEE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHHHHhcCCCCE
Confidence 566777652 356667777666554 3443333334444443 36887765441 3445667777764 35677
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|. .+..... .+.+..|..+++..|-+ .+++...+..++.
T Consensus 77 i~------~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 77 IL------VTGRSDRIDRIVGLEMGADDYVTKPLE--LRELVVRVKNLLW 118 (122)
T ss_dssp EE------EESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EE------EECCCChhhHHHHHHhCHHHHccCCCC--HHHHHHHHHHHHH
Confidence 72 2332221 23344577899999888 8999998887653
No 217
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=56.02 E-value=57 Score=23.86 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=63.7
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++++.+.. .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (124)
T 1srr_A 4 EKILIVDDQS----GIRILLNEVFNKEGY--QTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMKVIDENI 76 (124)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHHHHCTTC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHHhCCCC
Confidence 3567777652 356666777766554 3433332233333332 36888765431 3334566666554 467
Q ss_pred CEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 384 PVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+|. .+..... .+....|..+++..|-+ .+++.+++.+++.
T Consensus 77 ~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVII------MTAYGELDMIQESKELGALTHFAKPFD--IDEIRDAVKKYLP 120 (124)
T ss_dssp EEEE------EESSCCHHHHHHHHHHTCCCEEESSCC--HHHHHHHHHHHSC
T ss_pred CEEE------EEccCchHHHHHHHhcChHhhccCCCC--HHHHHHHHHHHhc
Confidence 8873 3333221 23344577889999888 9999999988765
No 218
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=55.99 E-value=48 Score=30.11 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=47.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... .+.+..++..+...|.+|.++++..-..+..............|..+......... ....|
T Consensus 156 ~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ea--v~~aD 227 (323)
T 3gd5_A 156 AGLKLAYVGDG------NNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEA--ARGAH 227 (323)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCCEEEEECCC------CcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHH--hcCCC
Confidence 45789988642 48899999999999999999997654433322222222222345444333333222 24688
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 228 vvyt~~ 233 (323)
T 3gd5_A 228 ILYTDV 233 (323)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 888864
No 219
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=55.59 E-value=90 Score=26.07 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=67.3
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
..+++|+.+.+ .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. .+
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDS----DVLASLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVTALRAMDND 79 (233)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 35778887763 356667777776654 3443333233333333 36887765431 3445677777664 46
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|+|. .+.... ..+.+..|..|++..|-+ .+++.++|..++.
T Consensus 80 ~~ii~------lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCV------LSARSSVDDRVAGLEAGADDYLVKPFV--LAELVARVKALLR 124 (233)
T ss_dssp CCEEE------EECCCTTTCCCTTTTTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEE------EEcCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 88883 222222 233445677899999888 9999999998875
No 220
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=55.58 E-value=61 Score=24.12 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=64.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .+.
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (132)
T 3crn_A 4 KRILIVDDDT----AILDSTKQILEFEGY--EVEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLEKAHKLRPGM 76 (132)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHHHHHHHCTTS
T ss_pred cEEEEEeCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCC
Confidence 4567777652 356666777766554 3443333233333333 35887765431 3334666666653 467
Q ss_pred CEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 384 PVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+|. .+..... .+.+..|..|++..|-+ .+++.++|..++.
T Consensus 77 ~ii~------~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIM------VTGYASLENSVFSLNAGADAYIMKPVN--PRDLLEKIKEKLD 120 (132)
T ss_dssp EEEE------EESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cEEE------EeccccHHHHHHHHhccchhhccCCCC--HHHHHHHHHHHHh
Confidence 8773 3333222 23345678899999988 9999999988764
No 221
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.35 E-value=58 Score=23.77 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=63.1
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (477)
+++|+.+.+ .....++...++.|. .|......++....+. ..|++++-..- .+.-|..+++.+. .+.|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 4 KILVVDDEK----PIADILEFNLRKEGY--EVHCAHDGNEAVEMVEELQPDLILLDIML-PNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCSEEEEETTS-TTTHHHHHHHHHHTTCCSCE
T ss_pred eEEEEECCH----HHHHHHHHHHHhCCE--EEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCE
Confidence 566666652 355666666666654 3433332233333333 35777765441 4445666666654 36787
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+ .+..... .+.+..|..+++..|-+ .+++...+..++.
T Consensus 77 i~------~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IM------LTAKDSEIDKVIGLEIGADDYVTKPFS--TRELLARVKANLR 118 (120)
T ss_dssp EE------EEESSCHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHT
T ss_pred EE------EECCCChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHh
Confidence 73 2332222 22345678899999988 9999999987764
No 222
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=55.32 E-value=9.2 Score=31.99 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHhcCEEEEcCCCCCCcccH--HHHHHHHcCCCEEeeccccccccCCCc-eEEe----------ecCCceeeecCCC
Q 011779 351 APYLAAIDVLVQNSQAWGECFGR--ITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIV----------VNGTTGLLHPVGK 417 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~--~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v----------~~~~~G~l~~~~d 417 (477)
.-+...||.+|.-- -++|. .+.||+..|+||+ +-+..|. .+.+ ......++.-.+|
T Consensus 113 ~~m~~~sda~Ivlp----GG~GTL~E~~eal~~~kPV~-------lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~ 181 (195)
T 1rcu_A 113 FVLLRNADVVVSIG----GEIGTAIEILGAYALGKPVI-------LLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWT 181 (195)
T ss_dssp HHHHTTCSEEEEES----CCHHHHHHHHHHHHTTCCEE-------EETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESS
T ss_pred HHHHHhCCEEEEec----CCCcHHHHHHHHHhcCCCEE-------EECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCC
Confidence 34567799877542 33564 5799999999999 6654332 2222 1122223334444
Q ss_pred CCHHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKL 430 (477)
Q Consensus 418 ~~~~~la~~i~~l 430 (477)
++++.+.|.++
T Consensus 182 --~ee~~~~l~~~ 192 (195)
T 1rcu_A 182 --VEEAVQIIEQI 192 (195)
T ss_dssp --HHHHHHHHHTC
T ss_pred --HHHHHHHHHHH
Confidence 88888877643
No 223
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=54.78 E-value=24 Score=32.87 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=58.4
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.++.|+++|-=.-.+ .-+.++..+..... ...+.+++-+-+. ..+..++.+++++.+ ++ ..
T Consensus 5 ~klrvgiIG~G~ig~---~h~~~~~~~~~~~~----~~~~~~l~av~d~------~~~~a~~~a~~~g~~-~~-----~~ 65 (390)
T 4h3v_A 5 TNLGIGLIGYAFMGA---AHSQAWRSAPRFFD----LPLHPDLNVLCGR------DAEAVRAAAGKLGWS-TT-----ET 65 (390)
T ss_dssp CEEEEEEECHHHHHH---HHHHHHHHHHHHSC----CSSEEEEEEEECS------SHHHHHHHHHHHTCS-EE-----ES
T ss_pred CcCcEEEEcCCHHHH---HHHHHHHhCccccc----cccCceEEEEEcC------CHHHHHHHHHHcCCC-cc-----cC
Confidence 347788887421112 23444444421000 1124567666553 356677888888764 11 25
Q ss_pred CHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++. .|+++..+- ...-.-.+++|+.+|++|+
T Consensus 66 d~~~ll~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhVl 103 (390)
T 4h3v_A 66 DWRTLLERDDVQLVDVCTP--GDSHAEIAIAALEAGKHVL 103 (390)
T ss_dssp CHHHHTTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred CHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCCce
Confidence 77788764 788888776 4444556889999999999
No 224
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=54.77 E-value=10 Score=36.95 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=28.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (477)
+++|+++. ++..|--.-+..|++.|+++ ||+|++++...
T Consensus 6 ~~~vl~~p--~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 6 TPHVAIIP--SPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp CCEEEEEC--CSCHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CcEEEEec--CcchhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 35777775 22234446689999999998 99999998654
No 225
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.76 E-value=27 Score=28.35 Aligned_cols=111 Identities=13% Similarity=0.153 Sum_probs=66.8
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH---cC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (477)
..+++|+.+.+ .....+....+..|. .|......++....+.. .|++++-..- .+.-|+-+++.+. ..
T Consensus 7 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~ 79 (184)
T 3rqi_A 7 DKNFLVIDDNE----VFAGTLARGLERRGY--AVRQAHNKDEALKLAGAEKFEFITVXLHL-GNDSGLSLIAPLCDLQPD 79 (184)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHTTSCCSEEEECSEE-TTEESHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhhCCCCEEEEeccC-CCccHHHHHHHHHhcCCC
Confidence 45777777752 356667777776654 34333333333333332 5777754331 3445666766654 36
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.|||+ .|.... ..+.+..|..+++..|-+ .+++.++|..++..
T Consensus 80 ~~ii~------lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 80 ARILV------LTGYASIATAVQAVKDGADNYLAKPAN--VESILAALQTNASE 125 (184)
T ss_dssp CEEEE------EESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHTSTTHHH
T ss_pred CCEEE------EeCCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHH
Confidence 78873 333322 233455688899999988 99999999887653
No 226
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=54.67 E-value=16 Score=30.65 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=29.3
Q ss_pred ccEEEEEeccCCC--Cchh-hHHHHHHHHHHhCC--cEEEEEecC
Q 011779 74 SKLVLLVSHELSL--SGGP-LLLMELAFLLRGVG--TKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~--gG~~-~~~~~l~~~L~~~G--~~V~v~~~~ 113 (477)
||||+++..+..+ +|.. ..+..+++.+.+.| ++|.++...
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 4689999877665 4544 55667888888877 999988744
No 227
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=54.66 E-value=37 Score=29.63 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=23.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++....
T Consensus 28 k~vlVT-----Gas~gIG~aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 28 APILIT-----GASQRVGLHCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp CCEEES-----STTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 455555 3333455688899999999998887543
No 228
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=54.44 E-value=51 Score=30.37 Aligned_cols=81 Identities=5% Similarity=-0.045 Sum_probs=44.1
Q ss_pred ccCCCccEEEEEeccCCCCchhhHHHHHHHHHH-h-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHH
Q 011779 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-G-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN 146 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~-~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 146 (477)
...|+++||.++.. |. .-...+..|. + .|.++..++...... ........|+..........+.
T Consensus 18 ~~~m~~~rvgiIG~----G~---~g~~~~~~l~~~~~~~~lvav~d~~~~~-------~~~~a~~~g~~~~~~~~~~~ll 83 (357)
T 3ec7_A 18 YFQGMTLKAGIVGI----GM---IGSDHLRRLANTVSGVEVVAVCDIVAGR-------AQAALDKYAIEAKDYNDYHDLI 83 (357)
T ss_dssp ----CCEEEEEECC----SH---HHHHHHHHHHHTCTTEEEEEEECSSTTH-------HHHHHHHHTCCCEEESSHHHHH
T ss_pred ccCCCeeeEEEECC----cH---HHHHHHHHHHhhCCCcEEEEEEeCCHHH-------HHHHHHHhCCCCeeeCCHHHHh
Confidence 34577889999874 22 2234556666 3 478877666443331 1111222342223344556677
Q ss_pred HhcCCcEEEEcCcchhh
Q 011779 147 TALKADLIVLNTAVAGK 163 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~ 163 (477)
...++|+|++.++....
T Consensus 84 ~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 84 NDKDVEVVIITASNEAH 100 (357)
T ss_dssp HCTTCCEEEECSCGGGH
T ss_pred cCCCCCEEEEcCCcHHH
Confidence 66789999998865443
No 229
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=54.39 E-value=30 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=23.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+.|+++|+ ||..-.=..+++.|.++|++|.++...
T Consensus 3 ~~k~~lVT-----Gas~gIG~~ia~~l~~~G~~V~~~~~~ 37 (246)
T 3osu_A 3 MTKSALVT-----GASRGIGRSIALQLAEEGYNVAVNYAG 37 (246)
T ss_dssp CSCEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555665 333344567899999999999887644
No 230
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=54.28 E-value=67 Score=28.91 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=48.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... ..+.+..++..+...|.+|.++++..-..+..............|.++......... ....|
T Consensus 147 ~gl~va~vGD~-----~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~ea--v~~aD 219 (307)
T 2i6u_A 147 RGLRLSYFGDG-----ANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAA--AAGAD 219 (307)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCeEEEEECCC-----CcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hcCCC
Confidence 34689887652 148999999999999999999997654433322221222223445444333333322 34689
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 220 vvy~~~ 225 (307)
T 2i6u_A 220 VLVTDT 225 (307)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988853
No 231
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=54.08 E-value=8.7 Score=32.09 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=28.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|||||++......++ ......+++.+.+.|++|.++.
T Consensus 1 MmkiLiI~gsp~~~~-s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 1 MPKTLIILAHPNISQ-STVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp -CCEEEEECCTTGGG-CSHHHHHHHHHTTCTTTEEEEE
T ss_pred CCEEEEEEeCCCccH-HHHHHHHHHHHHhCCCeEEEEE
Confidence 468988886554433 3678888899999999999987
No 232
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=54.05 E-value=58 Score=23.39 Aligned_cols=107 Identities=8% Similarity=0.084 Sum_probs=60.6
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (477)
+++++.+.. .....++...++.|. .+......++....+. ..|++++-..- .+.-|..+++.+. ...|
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (116)
T 3a10_A 3 RILVVDDEP----NIRELLKEELQEEGY--EIDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGEIRKKKKDAK 75 (116)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHccCCCCe
Confidence 456666652 356666776666654 3443333333333333 35777765431 3334666666653 4577
Q ss_pred EEeeccccccccCCCc-eEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 385 VLLQKCLYQGTAAGGT-TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
+|. .+..... .+....|..+++..|-+ .+++..++..++
T Consensus 76 ii~------~s~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IIL------LTAYSHYRSDMSSWAADEYVVKSFN--FDELKEKVKKLL 115 (116)
T ss_dssp EEE------EESCGGGGGCGGGGGSSEEEECCSS--THHHHHHHHHHT
T ss_pred EEE------EECCcchHHHHHhccccceEECCCC--HHHHHHHHHHHh
Confidence 773 2222111 33344566789988887 899998887764
No 233
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=53.91 E-value=58 Score=29.57 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=48.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++.. |..+.+..++..+...|.+|+++++..-..+..............|..+......... ....|
T Consensus 166 ~gl~va~vGD-----~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 238 (325)
T 1vlv_A 166 KGVKVVFMGD-----TRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEA--LAGAD 238 (325)
T ss_dssp TTCEEEEESC-----TTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHH--HTTCS
T ss_pred CCcEEEEECC-----CCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--HccCC
Confidence 3478988765 2248999999999999999999997543333222111222223456555433333322 34789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 239 vvyt~~ 244 (325)
T 1vlv_A 239 VVYTDV 244 (325)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 998864
No 234
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=53.77 E-value=70 Score=28.83 Aligned_cols=25 Identities=16% Similarity=-0.092 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
..=..+++.|.+.|++|.++.....
T Consensus 16 ~iG~~l~~~L~~~G~~V~~~~r~~~ 40 (341)
T 3enk_A 16 YIGSHTAVELLAHGYDVVIADNLVN 40 (341)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCc
Confidence 4456788999999999999875433
No 235
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=53.77 E-value=33 Score=30.07 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|..+++++|+ ||..-.=..+++.|.+.|++|.+....
T Consensus 23 m~~~k~vlIT-----Gas~gIG~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 23 MSDTPVVLVT-----GGSRGIGAAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp -CCSCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCCCEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4445666776 333345568899999999999887544
No 236
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=53.74 E-value=13 Score=31.40 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=29.2
Q ss_pred ccEEEEEeccCCC-Cchh-hHHHHHHHHHHhC--CcEEEEEecC
Q 011779 74 SKLVLLVSHELSL-SGGP-LLLMELAFLLRGV--GTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (477)
|||||++..+... +|.. ..+..+++.+.+. |++|.++-..
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4789998876655 4444 5566778888877 9999998743
No 237
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=53.68 E-value=19 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=29.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (477)
||||+++..+ ..|..+..+..+++.|.+ .|++|.++...
T Consensus 4 M~kiliiy~S-~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 4 MGKVLVIYDT-RTGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp CEEEEEEECC-SSSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CCEEEEEEEC-CCcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 4688888755 234455778889999998 89999988643
No 238
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=53.54 E-value=80 Score=28.69 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
.++..++++|- +. =| ...+.++. + +.++++++.+-+. ..+..++.+++++.+ .+ .
T Consensus 6 ~~~~~v~iiG~-G~-ig-~~~~~~l~---~-------~~~~~~~vav~d~------~~~~~~~~a~~~g~~-~~-----~ 60 (346)
T 3cea_A 6 RKPLRAAIIGL-GR-LG-ERHARHLV---N-------KIQGVKLVAACAL------DSNQLEWAKNELGVE-TT-----Y 60 (346)
T ss_dssp CCCEEEEEECC-ST-TH-HHHHHHHH---H-------TCSSEEEEEEECS------CHHHHHHHHHTTCCS-EE-----E
T ss_pred CCcceEEEEcC-CH-HH-HHHHHHHH---h-------cCCCcEEEEEecC------CHHHHHHHHHHhCCC-cc-----c
Confidence 45577888875 11 12 12333333 1 2367887655543 234556667766642 11 2
Q ss_pred CCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.++++ .+|+++..+- .....-.+.+|+..|++|+
T Consensus 61 ~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v~ 99 (346)
T 3cea_A 61 TNYKDMIDTENIDAIFIVAP--TPFHPEMTIYAMNAGLNVF 99 (346)
T ss_dssp SCHHHHHTTSCCSEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred CCHHHHhcCCCCCEEEEeCC--hHhHHHHHHHHHHCCCEEE
Confidence 56778886 5899998876 4444455678999999999
No 239
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=53.32 E-value=22 Score=31.14 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=28.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
++|+||+........ .-+..|+++|.+ +++|.|+.+....
T Consensus 10 ~~m~ILlTNDDGi~a---pGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 10 PKLRLLLSNDDGVYA---KGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp -CCEEEEECSSCTTC---HHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCeEEEEcCCCCCC---HHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 458888777543221 458889999988 7899999976543
No 240
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=53.30 E-value=24 Score=28.26 Aligned_cols=86 Identities=9% Similarity=-0.077 Sum_probs=41.8
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHH-hCCc-EEEEEecCCCCCh--hhHHhhhhhhhhhcCcEEEeccchhhHH
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGT-KVNWITIQKPSEE--DEVIYSLEHKMWDRGVQVISAKGQETIN 146 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~-~~G~-~V~v~~~~~~~~~--~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 146 (477)
+|+|++|||||.... .-+..+..+.+.+. +.|. ++.+.+....... ..........+...|+.+-.... +.+.
T Consensus 3 ~~~m~~vLFVC~gN~--cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~~a-r~l~ 79 (158)
T 3rof_A 3 FQGMVDVAFVCLGNI--CRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMIS-ELFE 79 (158)
T ss_dssp CCSCEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCCSEEEEEEETTCCSTTCCCCHHHHHHHHHTTCCCTTCCC-CBCC
T ss_pred CCCCCEEEEEeCCch--hHHHHHHHHHHHHHHHcCCCCeEEEecccCCcccCCCCCHHHHHHHHHcCCCcCCCcc-eECC
Confidence 567889999996432 22344555555554 4442 2666652221100 01111223345566776532111 1111
Q ss_pred HhcCCcEEEEcCc
Q 011779 147 TALKADLIVLNTA 159 (477)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (477)
....+|+|++-+.
T Consensus 80 ~~~~~DlIi~Md~ 92 (158)
T 3rof_A 80 ATDDFDYIVAMDQ 92 (158)
T ss_dssp TTCCCSEEEESSH
T ss_pred hhhcCCEEEEcCH
Confidence 1118999999764
No 241
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=52.95 E-value=17 Score=31.39 Aligned_cols=40 Identities=5% Similarity=0.031 Sum_probs=29.6
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhC-CcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGV-GTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~-G~~V~v~~~~ 113 (477)
||+|+++..+...+|.. ..+..+++.|.+. |++|.++...
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 36899998766554544 6667788888887 9999988744
No 242
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=52.94 E-value=14 Score=30.38 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=26.1
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++||++..... .+.....++++.|.+.|++|+++.+..
T Consensus 2 ~k~IllgvTGs---~aa~k~~~l~~~L~~~g~~V~vv~T~~ 39 (181)
T 1g63_A 2 YGKLLICATAS---INVININHYIVELKQHFDEVNILFSPS 39 (181)
T ss_dssp CCCEEEEECSC---GGGGGHHHHHHHHTTTSSCEEEEECGG
T ss_pred CCEEEEEEECH---HHHHHHHHHHHHHHHCCCEEEEEEchh
Confidence 34565555322 122467899999999999999988554
No 243
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=52.91 E-value=85 Score=26.80 Aligned_cols=110 Identities=8% Similarity=0.033 Sum_probs=64.0
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---C
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---G 382 (477)
..+++|+.+.. .....+....+..|. .|......++....+. ..|++++-..- .+.-|+.+++.+.. .
T Consensus 23 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~ 95 (250)
T 3r0j_A 23 EARVLVVDDEA----NIVELLSVSLKFQGF--EVYTATNGAQALDRARETRPDAVILDVXM-PGMDGFGVLRRLRADGID 95 (250)
T ss_dssp SCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45666766652 345555555555543 2333222233333332 36777765431 44456777776643 5
Q ss_pred CCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|||+ .|..... .+.+..|..+++..|-+ .+++.++|..++.
T Consensus 96 ~~ii~------lt~~~~~~~~~~~~~~Ga~~yl~Kp~~--~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 96 APALF------LTARDSLQDKIAGLTLGGDDYVTKPFS--LEEVVARLRVILR 140 (250)
T ss_dssp CCEEE------EECSTTHHHHHHHHTSTTCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEE------EECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 78873 3333322 23345678899999988 9999999998875
No 244
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=52.75 E-value=40 Score=24.82 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=61.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-----cC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (477)
+++++.+.. .....+....++.|. .+......++....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 76 (127)
T 2jba_A 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLAWML-PGGSGIQFIKHLRRESMTRD 76 (127)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHTTCSSSCCSEEEEESEE-TTEEHHHHHHHHHTSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhCcccCC
Confidence 566777652 355666666666554 3333222122222222 35777754431 3334667777775 35
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.|+|. .+.... ..+.+..|..+++..|-+ .+++.+.+..++.
T Consensus 77 ~~ii~------~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 121 (127)
T 2jba_A 77 IPVVM------LTARGEEEDRVRGLETGADDCITKPFS--PKELVARIKAVMR 121 (127)
T ss_dssp SCEEE------EEETTHHHHHHTTCCCSCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCEEE------EeCCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 78873 222221 233445677889999888 9999999987764
No 245
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=52.43 E-value=55 Score=30.51 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=45.7
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
++++++-+-+. ..+..++.+++++.+ ...++.++++. .|+++..+- .....-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~a~~~g~~-------~~~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGk~ 90 (387)
T 3moi_A 26 PDAQIVAACDP------NEDVRERFGKEYGIP-------VFATLAEMMQHVQMDAVYIASP--HQFHCEHVVQASEQGLH 90 (387)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCC-------EESSHHHHHHHSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC-------eECCHHHHHcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCc
Confidence 77888755553 244456667777653 12678888886 899998876 44444567899999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 91 Vl 92 (387)
T 3moi_A 91 II 92 (387)
T ss_dssp EE
T ss_pred ee
Confidence 99
No 246
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=52.41 E-value=71 Score=28.89 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=48.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... .+.+..++..+...|.+|+++++..-..+..............|.++......... ....|
T Consensus 154 ~gl~va~vGD~------~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ea--v~~aD 225 (315)
T 1pvv_A 154 KGVKVVYVGDG------NNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKA--VKDAD 225 (315)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--TTTCS
T ss_pred CCcEEEEECCC------cchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hCCCC
Confidence 34688887642 48999999999999999999997654433322221222223456555333332222 34688
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 226 vvy~~~ 231 (315)
T 1pvv_A 226 VIYTDV 231 (315)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 888853
No 247
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=52.33 E-value=58 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=23.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.+....
T Consensus 6 k~vlVT-----Gas~GIG~aia~~L~~~G~~V~~~~r~ 38 (324)
T 3u9l_A 6 KIILIT-----GASSGFGRLTAEALAGAGHRVYASMRD 38 (324)
T ss_dssp CEEEES-----SCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE-----CCCcHHHHHHHHHHHHCCCEEEEecCc
Confidence 456666 222335568899999999999887654
No 248
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=52.29 E-value=32 Score=31.29 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=52.6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (477)
.+.++++|-=.- | ..+++++.+. +++.++-+-+.. .+..++.+++++.+. ...+
T Consensus 5 ~~rigiiG~G~i--g-~~~~~~l~~~-----------~~~~~~av~d~~------~~~~~~~a~~~~~~~------~~~~ 58 (329)
T 3evn_A 5 KVRYGVVSTAKV--A-PRFIEGVRLA-----------GNGEVVAVSSRT------LESAQAFANKYHLPK------AYDK 58 (329)
T ss_dssp CEEEEEEBCCTT--H-HHHHHHHHHH-----------CSEEEEEEECSC------SSTTCC---CCCCSC------EESC
T ss_pred ceEEEEEechHH--H-HHHHHHHHhC-----------CCcEEEEEEcCC------HHHHHHHHHHcCCCc------ccCC
Confidence 466777775111 1 2345555433 677777554432 122334455554421 1267
Q ss_pred HHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 350 VAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 350 l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+.++++ ..|+++..+- .....-.+.+|+..|++|++
T Consensus 59 ~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~Vl~ 96 (329)
T 3evn_A 59 LEDMLADESIDVIYVATI--NQDHYKVAKAALLAGKHVLV 96 (329)
T ss_dssp HHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCeEEE
Confidence 888888 7899998876 44444567889999999993
No 249
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=52.24 E-value=20 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=26.3
Q ss_pred ccEEEEEeccCCCCchhh-HHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPL-LLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||+++..+...+|... .+..+++.+. .|++|.++...
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 578999987766666554 4445555565 68999988744
No 250
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=52.13 E-value=72 Score=27.62 Aligned_cols=67 Identities=7% Similarity=0.069 Sum_probs=43.7
Q ss_pred EEEEEec-CCCcchHHHHHHHHHHHhcCCCCcEEEcc---ccCCHHHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 310 HAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 310 ~l~ivG~-g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~l~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
++.|+|. | ..-..+.+.+.+. +.+.+.+ ..+++..++. .+|++|--|. .+..--.+..+...|+|
T Consensus 2 kV~V~Ga~G-----~mG~~i~~~~~~~---~~~elva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~~g~~ 71 (245)
T 1p9l_A 2 RVGVLGAKG-----KVGTTMVRAVAAA---DDLTLSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLIDNGIH 71 (245)
T ss_dssp EEEEETTTS-----HHHHHHHHHHHHC---TTCEEEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHHTTCE
T ss_pred EEEEECCCC-----HHHHHHHHHHHhC---CCCEEEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHHcCCC
Confidence 5788885 7 5666666666543 1223332 2366777775 7999995665 66654455667899999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
+|
T Consensus 72 ~V 73 (245)
T 1p9l_A 72 AV 73 (245)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 251
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=51.84 E-value=29 Score=26.18 Aligned_cols=112 Identities=9% Similarity=0.071 Sum_probs=63.5
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH-hcCEEEEcCCCCCCcccHHHHHHHH--c--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMA--F-- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma--~-- 381 (477)
...+++|+.+.. .....++...+..|. .|......++....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 6 TGLKVLVMDENG----VSRMVTKGLLVHLGC--EVTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIALRIHEKFTK 78 (136)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHHHHHHhhhh
Confidence 346788887762 356667777776654 3433332233333332 23887765431 3334556666654 1
Q ss_pred ---CCC-EEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 ---QLP-VLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 ---G~P-vI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..| +|+ .+..... .+....|..+++..|-+ .+++.+++..++..
T Consensus 79 ~~~~~~~ii~------~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 QRHQRPLLVA------LSGNTDKSTKEKCMSFGLDGVLLKPVS--LDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSCCCEEEE------EESCCSHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHSC
T ss_pred ccCCCceEEE------EeCCCCHHHHHHHHHcCCCeEEECCCC--HHHHHHHHHHHhch
Confidence 344 441 2333222 22345677899999988 99999999888753
No 252
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=51.78 E-value=31 Score=28.74 Aligned_cols=112 Identities=12% Similarity=0.177 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---------------hcCEEEEcCCCCCCccc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------------AIDVLVQNSQAWGECFG 372 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---------------~aDv~v~pS~~~~E~~g 372 (477)
..+++|+.+.. .....+..+.++.|.. .|......++..+++. ..|++++=..- .+.-|
T Consensus 61 ~~~ILiVdDd~----~~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~l-p~~~G 134 (206)
T 3mm4_A 61 GKRVLVVDDNF----ISRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQM-PEMDG 134 (206)
T ss_dssp TCEEEEECSCH----HHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCC-SSSCH
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCC-CCCCH
Confidence 34566665542 3445555555555432 3333333233333332 36777765431 44456
Q ss_pred HHHHHHHH-------cCCCEEeeccccccccCC-C---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 373 RITIEAMA-------FQLPVLLQKCLYQGTAAG-G---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 373 ~~~lEAma-------~G~PvI~~~~~~~~~~~g-g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
+.+++.+. ..+|||+ .|... . ..+.+..|..+++..|- ++|.++|..++....
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~------ls~~~~~~~~~~~~~~~Ga~~~l~KP~----~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIA------VSGHDPGSEEARETIQAGMDAFLDKSL----NQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEE------EESSCCCHHHHHHHHHHTCSEEEETTC----TTHHHHHHHHC----
T ss_pred HHHHHHHHhhhhhcCCCCcEEE------EECCCCcHHHHHHHHhCCCCEEEcCcH----HHHHHHHHHHHhhhH
Confidence 77776664 4678883 33322 1 12334557788888864 378888888876433
No 253
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=51.73 E-value=32 Score=31.68 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=56.4
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.++.++++|-=.- |....+.++.+ .++++++-+-+. ..+..++.+++++++ . ..
T Consensus 26 ~~~rigiIG~G~~--g~~~~~~~l~~-----------~~~~~l~av~d~------~~~~~~~~a~~~g~~---~----~~ 79 (350)
T 3rc1_A 26 NPIRVGVIGCADI--AWRRALPALEA-----------EPLTEVTAIASR------RWDRAKRFTERFGGE---P----VE 79 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHH-----------CTTEEEEEEEES------SHHHHHHHHHHHCSE---E----EE
T ss_pred CceEEEEEcCcHH--HHHHHHHHHHh-----------CCCeEEEEEEcC------CHHHHHHHHHHcCCC---C----cC
Confidence 4577888875111 11123444442 277888755443 245566777777653 1 16
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++ ..|+++..+- ...-.-.+.+|+..|++|+
T Consensus 80 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~Vl 117 (350)
T 3rc1_A 80 GYPALLERDDVDAVYVPLP--AVLHAEWIDRALRAGKHVL 117 (350)
T ss_dssp SHHHHHTCTTCSEEEECCC--GGGHHHHHHHHHHTTCEEE
T ss_pred CHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCcEE
Confidence 7778886 4899998776 4444456788999999999
No 254
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=51.58 E-value=64 Score=29.40 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=58.3
Q ss_pred CCCeEEEEEeec-ccCCCHHHHHHHHHHHHHHHHhhccCc-CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEV-PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~-~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+++.++++|-= ...+ ..+.++. +. ++++++-+-+. ..+..++.+++++.. .
T Consensus 16 ~~~irvgiIG~G~~~g~---~~~~~l~-----------~~~~~~~lvav~d~------~~~~~~~~a~~~~~~-~----- 69 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARE---LHLPALK-----------NLSHLFEITAVTSR------TRSHAEEFAKMVGNP-A----- 69 (340)
T ss_dssp CCCEEEEEECCSHHHHH---THHHHHH-----------TTTTTEEEEEEECS------SHHHHHHHHHHHSSC-E-----
T ss_pred CCceeEEEEecCHHHHH---HHHHHHH-----------hCCCceEEEEEEcC------CHHHHHHHHHHhCCC-c-----
Confidence 567888888852 1111 1234433 33 67888755553 245566777777642 1
Q ss_pred ccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 346 KTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 346 ~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
..+++.++++ ..|+++..+- ...-.-.+.+|+..|++|++
T Consensus 70 ~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~ 111 (340)
T 1zh8_A 70 VFDSYEELLESGLVDAVDLTLP--VELNLPFIEKALRKGVHVIC 111 (340)
T ss_dssp EESCHHHHHHSSCCSEEEECCC--GGGHHHHHHHHHHTTCEEEE
T ss_pred ccCCHHHHhcCCCCCEEEEeCC--chHHHHHHHHHHHCCCcEEE
Confidence 1267888887 4899988876 44444567789999999993
No 255
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=51.55 E-value=21 Score=29.46 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=25.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+.|+|+++. |....=..+++.|.++|++|.+++..
T Consensus 2 ~~~~ilVtG------atG~iG~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 2 AVKKIAIFG------ATGQTGLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEc------CCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence 346776553 33355678889999999999998854
No 256
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=51.44 E-value=1.2e+02 Score=26.19 Aligned_cols=42 Identities=10% Similarity=-0.150 Sum_probs=28.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+..+|.++.+.....-....+..+.+++.+.|+++.++...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK 47 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345679998876433233355667777888999999887654
No 257
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=51.34 E-value=33 Score=31.03 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=23.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhC-C-cEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~ 113 (477)
|++|+|+++.. |. + ..+++.|.+. | ++|.++...
T Consensus 2 m~~~~Ili~g~-----g~-~--~~l~~~l~~~~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSA-----GR-R--AKLVEYFVKEFKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESC-----TT-C--HHHHHHHHHHCCSSEEEEEESC
T ss_pred CccceEEEecC-----Cc-h--HHHHHHHHHhcCCCEEEEEeCC
Confidence 77889998742 22 2 4688888875 6 888887644
No 258
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=51.25 E-value=49 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=29.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+|+++..+. .|..+..+..+++.|.+.|++|.++....
T Consensus 1 Mkv~IvY~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 39 (161)
T 3hly_A 1 MSVLIGYLSD-YGYSDRLSQAIGRGLVKTGVAVEMVDLRA 39 (161)
T ss_dssp -CEEEEECTT-STTHHHHHHHHHHHHHHTTCCEEEEETTT
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5676665433 36777889999999999999998887543
No 259
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=50.94 E-value=26 Score=29.53 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=49.9
Q ss_pred ceEEEEEec--CCCcchHHHHHHHHHHHhcCCCCcEEEcc----ccCCHHHHHHhcCEEEEcCCCCCCccc---------
Q 011779 308 SVHAVIIGS--DMNAQTKFESELRNYVMQKKIQDRVHFVN----KTLTVAPYLAAIDVLVQNSQAWGECFG--------- 372 (477)
Q Consensus 308 ~~~l~ivG~--g~~~~~~~~~~l~~~~~~~~l~~~v~~~g----~~~~l~~~~~~aDv~v~pS~~~~E~~g--------- 372 (477)
.-++.++.. +.+....+...+++..+++|. .+..+. ..+++.+.+..+|.+++|-- +.+-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~--~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG---~~~~l~~~L~~~g 101 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGL--LVEELDIATESLGEITTKLRKNDFIYVTGG---NTFFLLQELKRTG 101 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTC--EEEECCTTTSCHHHHHHHHHHSSEEEECCS---CHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCC--eEEEEEecCCChHHHHHHHHhCCEEEECCC---CHHHHHHHHHHCC
Confidence 346666653 322333577888888888887 466553 33566688999999999863 3221
Q ss_pred --HHHHHHHHcCCCEE
Q 011779 373 --RITIEAMAFQLPVL 386 (477)
Q Consensus 373 --~~~lEAma~G~PvI 386 (477)
-.+-|+...|+|++
T Consensus 102 l~~~l~~~~~~G~p~~ 117 (206)
T 3l4e_A 102 ADKLILEEIAAGKLYI 117 (206)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHcCCeEE
Confidence 24677888899999
No 260
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=50.85 E-value=1.2e+02 Score=28.33 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=46.4
Q ss_pred CceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh-------cCEEEEcCCCCCCcccHHHHHH
Q 011779 307 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 307 ~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~-------aDv~v~pS~~~~E~~g~~~lEA 378 (477)
+++.++- +-+. ..+..++.++++|++.. ....++.++++. .|+++..+- ...-.-.+.+|
T Consensus 38 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~i~tp--~~~H~~~~~~a 105 (398)
T 3dty_A 38 NTFVLVAGAFDI------DPIRGSAFGEQLGVDSE----RCYADYLSMFEQEARRADGIQAVSIATP--NGTHYSITKAA 105 (398)
T ss_dssp GSEEEEEEECCS------SHHHHHHHHHHTTCCGG----GBCSSHHHHHHHHTTCTTCCSEEEEESC--GGGHHHHHHHH
T ss_pred CCeEEEEEEeCC------CHHHHHHHHHHhCCCcc----eeeCCHHHHHhcccccCCCCCEEEECCC--cHHHHHHHHHH
Confidence 6677763 3332 24566777888876420 123678888876 899988876 44444567899
Q ss_pred HHcCCCEE
Q 011779 379 MAFQLPVL 386 (477)
Q Consensus 379 ma~G~PvI 386 (477)
+..|++|+
T Consensus 106 l~aGkhVl 113 (398)
T 3dty_A 106 LEAGLHVV 113 (398)
T ss_dssp HHTTCEEE
T ss_pred HHCCCeEE
Confidence 99999999
No 261
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=50.75 E-value=45 Score=28.30 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=27.6
Q ss_pred CccEEEEEeccCC----CCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELS----LSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~----~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.|||||++..... .++.. ..+..+++.+.+.|++|.++...
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568888885543 23444 33456677777899999998754
No 262
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=50.50 E-value=18 Score=29.97 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=28.9
Q ss_pred ccEEEEEeccCCC-Cch-hhHHHHHHHHHHhCC--cEEEEEecC
Q 011779 74 SKLVLLVSHELSL-SGG-PLLLMELAFLLRGVG--TKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~-gG~-~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (477)
||||+++..+... +|. ...+..+++.+.+.| ++|.++...
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689988876654 343 366677888888876 999988744
No 263
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=50.22 E-value=76 Score=23.58 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=65.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.. .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ...
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (136)
T 1mvo_A 4 KKILVVDDEE----SIVTLLQYNLERSGY--DVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCKQLRQQKLMF 76 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCc--EEEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHcCCCCC
Confidence 3667777652 355666676766654 3443333233333332 36888765431 3334666666664 457
Q ss_pred CEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 384 PVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
|+|. .+..+.. .+.+..|..+++..|-+ .+++...+..++..
T Consensus 77 ~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILM------LTAKDEEFDKVLGLELGADDYMTKPFS--PREVNARVKAILRR 121 (136)
T ss_dssp CEEE------EECTTCCCCHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CEEE------EECCCCHHHHHHHHhCCCCEEEECCCC--HHHHHHHHHHHHHh
Confidence 7772 2222222 22345677899999888 99999999988764
No 264
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=50.08 E-value=24 Score=30.66 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.++|++.+||+....-.|=.....-|++.|+++|++|..+=
T Consensus 17 ~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 17 LYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp --CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 34567788888766556666778899999999999999885
No 265
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=49.95 E-value=1.2e+02 Score=25.95 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=60.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHH---HcC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQ 382 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAm---a~G 382 (477)
+.+++++.+.. .....+....++.|. .|.......+....+. ..|++++-..- .+.-|+.+++.+ ...
T Consensus 129 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~dlvl~D~~m-p~~~G~~l~~~ir~~~~~ 201 (254)
T 2ayx_A 129 DMMILVVDDHP----INRRLLADQLGSLGY--QCKTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLTQRIRQLGLT 201 (254)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHHTS--EEEEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhcCCC
Confidence 34566666542 244455555555554 3433333233333333 25776643321 233455555554 347
Q ss_pred CCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 383 LPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|||+ .|.... ..+.+..|..+++..|-+ .+++.++|..++.
T Consensus 202 ~piI~------lt~~~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 202 LPVIG------VTANALAEEKQRCLESGMDSCLSKPVT--LDVIKQTLTLYAE 246 (254)
T ss_dssp SCEEE------EESSTTSHHHHHHHHCCCEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CcEEE------EECCCCHHHHHHHHHcCCceEEECCCC--HHHHHHHHHHHHH
Confidence 89883 222222 123344577889999988 9999999988764
No 266
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=49.34 E-value=73 Score=23.13 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=62.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (477)
+++++.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ...|+
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~i 77 (123)
T 1xhf_A 5 HILIVEDEL----VTRNTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARELREQANVAL 77 (123)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHHCCCEE
T ss_pred eEEEEeCCH----HHHHHHHHHHhhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHhCCCCcE
Confidence 567777652 356666777766554 3443333233333333 36888765431 3334566666553 46777
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|. .+..... .+.+..|..+++..|-+ .+++...+..++.
T Consensus 78 i~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 78 MF------LTGRDNEVDKILGLEIGADDYITKPFN--PRELTIRARNLLS 119 (123)
T ss_dssp EE------EESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EE------EECCCChHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 72 2232222 23345677899999988 9999999887653
No 267
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=49.32 E-value=25 Score=26.59 Aligned_cols=111 Identities=5% Similarity=0.072 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH--HhcCEEEEcCCCCCC--cccHHHHHHHHc--
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGE--CFGRITIEAMAF-- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E--~~g~~~lEAma~-- 381 (477)
..+++|+.+.. .....++...++.|. .|......++....+ ...|++++-... .+ .-|+.+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQK----DARAALSKLLSPLDV--TIQCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHTTSSS--EEEEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCC
Confidence 35777887752 356667777776654 343332212211222 225777765441 34 456667666653
Q ss_pred -CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
.+|+|. .+.... ..+.+..|..+++..|-+ .+++.++|.+++..
T Consensus 79 ~~~~ii~------~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 79 FHLPTIV------MASSSDIPTAVRAMRASAADFIEKPFI--EHVLVHDVQQIING 126 (136)
T ss_dssp CCCCEEE------EESSCCHHHHHHHHHTTCSEEEESSBC--HHHHHHHHHHHHHH
T ss_pred CCCCEEE------EEcCCCHHHHHHHHHcChHHheeCCCC--HHHHHHHHHHHHhc
Confidence 678873 333322 223445678899999988 99999999988763
No 268
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=49.29 E-value=27 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=28.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|||||+........ .-+..|+++|++.| +|.|+.+....
T Consensus 1 ~M~ILlTNDDGi~a---pGi~aL~~~l~~~g-~V~VVAP~~~~ 39 (251)
T 2phj_A 1 MPTFLLVNDDGYFS---PGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp -CEEEEECSSCTTC---HHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCEEEEECCCCCCC---HHHHHHHHHHHhcC-CEEEEecCCCc
Confidence 37888777543221 45889999999998 99999976543
No 269
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=49.20 E-value=68 Score=30.15 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=61.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
.+++.|+++|-=.-.+ .-++++.++.....+ ..++++++-+-+. ..+..++.+++++.+ ++ .
T Consensus 24 s~klrvgiIG~G~ig~---~h~~~~~~~~~~~~~---~~~~~elvav~d~------~~~~a~~~a~~~~~~-~~-----y 85 (412)
T 4gqa_A 24 SARLNIGLIGSGFMGQ---AHADAYRRAAMFYPD---LPKRPHLYALADQ------DQAMAERHAAKLGAE-KA-----Y 85 (412)
T ss_dssp -CEEEEEEECCSHHHH---HHHHHHHHHHHHCTT---SSSEEEEEEEECS------SHHHHHHHHHHHTCS-EE-----E
T ss_pred cccceEEEEcCcHHHH---HHHHHHHhccccccc---cCCCeEEEEEEcC------CHHHHHHHHHHcCCC-eE-----E
Confidence 4678899988521111 345556554321111 1135677755553 356677888888764 11 2
Q ss_pred CCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
.++.++++. .|+++..+- ...-.-.+++|+..|++|+
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl 124 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSP--NHLHYTMAMAAIAAGKHVY 124 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred CCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHcCCCeE
Confidence 677888864 788888776 4444557889999999999
No 270
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=49.01 E-value=22 Score=30.80 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+.++..-+-.|-.....+|+..|+++|+.|.++-.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4555555433333445778999999999999999988654
No 271
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=48.93 E-value=67 Score=25.71 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=23.6
Q ss_pred HHHHHhcCEEEEcCC---CCCCcccHHHHH---HHHcCCCEEe
Q 011779 351 APYLAAIDVLVQNSQ---AWGECFGRITIE---AMAFQLPVLL 387 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~---~~~E~~g~~~lE---Ama~G~PvI~ 387 (477)
...+..||++|.--. . .+.=+.+..| |.+.|+|||.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g-~~~D~GTafEiGyA~AlgKPVi~ 103 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRG-HEPDCGTAFEVGCAAALNKMVLT 103 (161)
T ss_dssp HHHHHHCSEEEEECCCCSS-SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEecCCCC-CCCCCcHHHHHHHHHHCCCEEEE
Confidence 467899999875521 1 1223345555 8899999993
No 272
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.91 E-value=88 Score=23.94 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=64.5
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEE-EccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHH--
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-- 380 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~-~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma-- 380 (477)
...+++|+.+.. .....++...++ .+. .+. ......+....+.. .|++++-... .+.-|..+++.+.
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHP----IVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTL-PGPGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred cccEEEEECCcH----HHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHh
Confidence 346778887762 355666666655 332 222 22222333344433 5888765441 3344666666554
Q ss_pred -cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 -FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 -~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..+|+|+ .+.... ..+.+..|..+++..|-+ .+++.+.|..++.
T Consensus 77 ~~~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 77 DGAARILI------FTMHQGSAFALKAFEAGASGYVTKSSD--PAELVQAIEAILA 124 (153)
T ss_dssp CTTCCEEE------EESCCSHHHHHHHHHTTCSEEEETTSC--TTHHHHHHHHHTT
T ss_pred CCCCeEEE------EECCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHh
Confidence 3678873 233222 223345677889999887 8999999998876
No 273
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=48.90 E-value=15 Score=30.70 Aligned_cols=40 Identities=5% Similarity=-0.110 Sum_probs=26.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEE-EEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~ 111 (477)
|.+|||+++..+...+|..+.+.+.+....+.|++|. ++-
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~id 44 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGS 44 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEe
Confidence 5668999999877766655444444333335688988 654
No 274
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=48.87 E-value=37 Score=28.34 Aligned_cols=107 Identities=12% Similarity=0.029 Sum_probs=62.3
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH---cCCCEE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA---FQLPVL 386 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma---~G~PvI 386 (477)
+++|+.+.+ .....+....+..+ .|......++....+...|++++-..- .+.-|+.+++.+. ..+|+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~---~v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 4 KIAVVDDDK----NILKKVSEKLQQLG---RVKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEECSCH----HHHHHHHHHHTTTE---EEEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEEE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhCC---CEEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcEE
Confidence 566777652 35556666666553 343333222222222457888765431 3445666666654 468887
Q ss_pred eeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 387 LQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 387 ~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
. .+.... ..+.+..|..|++..|-+ .+++.++|..++.
T Consensus 76 ~------lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 76 L------LTLLSDDESVLKGFEAGADDYVTKPFN--PEILLARVKRFLE 116 (220)
T ss_dssp E------EESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred E------EEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 3 232222 123345678899999888 9999999998864
No 275
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=48.70 E-value=79 Score=23.33 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=66.6
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++|+.+.. .....+++..++.|. .|......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 6 SKRILVVDDDQ----AMAAAIERVLKRDHW--QVEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIRSLRQNKVA 78 (132)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHHHHHTTTCS
T ss_pred CccEEEEECCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCcc
Confidence 45778887752 456667777776654 4444333334333433 36887765542 44557778877763
Q ss_pred -CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
..|+| .+.... ..+.+..|..+++..|-+ .+++.++|.+....
T Consensus 79 ~~~~ii-------~~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 79 NQPKIL-------VVSGLDKAKLQQAVTEGADDYLEKPFD--NDALLDRIHDLVNE 125 (132)
T ss_dssp SCCEEE-------EECCSCSHHHHHHHHHTCCEEECSSCC--HHHHHHHHHHHHC-
T ss_pred CCCeEE-------EEeCCChHHHHHHHHhChHHHhhCCCC--HHHHHHHHHHHcCC
Confidence 23444 222211 223445678899999988 99999999988763
No 276
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=48.56 E-value=91 Score=28.04 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=46.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
.++|+++... .+.+..++..+...|.+|+++++..-..+..............|..+......... ....|+
T Consensus 146 gl~va~vGD~------~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ea--v~~aDv 217 (307)
T 3tpf_A 146 IAKVAFIGDS------NNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEA--LKDKDV 217 (307)
T ss_dssp CCEEEEESCS------SHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--HTTCSE
T ss_pred CCEEEEEcCC------CccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hcCCCE
Confidence 6789988751 37899999999999999999997654333222111121222445555433333222 246888
Q ss_pred EEEcC
Q 011779 154 IVLNT 158 (477)
Q Consensus 154 V~~~~ 158 (477)
|+...
T Consensus 218 vyt~~ 222 (307)
T 3tpf_A 218 VITDT 222 (307)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88853
No 277
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=48.55 E-value=23 Score=29.86 Aligned_cols=39 Identities=15% Similarity=-0.045 Sum_probs=27.2
Q ss_pred CccEEEEEeccCCCCchhhH--HHHHHHHHHhCCcEEEEEecCCC
Q 011779 73 KSKLVLLVSHELSLSGGPLL--LMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
+.|||++.... |+..+ ..++++.|.+.|++|+++.+...
T Consensus 4 ~~k~IllgiTG----siaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFTG----SHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEECS----CGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCCEEEEEEEC----hHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 45677766543 22334 78999999999999999886544
No 278
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.44 E-value=23 Score=29.35 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+|+.++..-+-.|-.....+|+..|+++|.+|.++-.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555543332344477889999999999999999755
No 279
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=47.90 E-value=39 Score=30.07 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee-----------------c-CCce
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV-----------------N-GTTG 410 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~-----------------~-~~~G 410 (477)
.-...++.||++|..... .|+|--.++++......++ .....|+.-+-. + ...|
T Consensus 41 ~d~~~l~~Adlvv~~G~~-~E~w~~~~~~~~~~~~~~~-------v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPE-MEAFMQKPVSKLPGAKQVT-------IAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHG 112 (284)
T ss_dssp THHHHHHHCSEEEECCTT-TCGGGHHHHHTSCGGGEEE-------GGGCTTTGGGCCC---------------------C
T ss_pred HHHHHHHcCCEEEEcCCC-cHHHHHHHHHhcCCCCcEE-------EecCCCcccccccccccccccccccccccccCCCC
Confidence 334568999999988764 7888777887665433344 332222211000 0 0112
Q ss_pred -----eeecCCCCCHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHH
Q 011779 411 -----LLHPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVK 449 (477)
Q Consensus 411 -----~l~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~ 449 (477)
+..+|.+ ...+++.|.+.+. ||+......+|+.++..
T Consensus 113 ~~dPH~Wldp~~--~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 156 (284)
T 2prs_A 113 DFNMHLWLSPEI--ARATAVAIHGKLVELMPQSRAKLDANLKDFEA 156 (284)
T ss_dssp CCCCCGGGCHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2333333 5667777776665 88887888788777664
No 280
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=47.83 E-value=42 Score=29.19 Aligned_cols=35 Identities=14% Similarity=-0.002 Sum_probs=23.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..|+++|+ ||..-.=..+++.|.+.|++|.+....
T Consensus 3 ~~k~vlVT-----Gas~gIG~aia~~l~~~G~~vv~~~~r 37 (258)
T 3oid_A 3 QNKCALVT-----GSSRGVGKAAAIRLAENGYNIVINYAR 37 (258)
T ss_dssp CCCEEEES-----SCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEe-----cCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 34566666 233334567889999999999987533
No 281
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=47.80 E-value=25 Score=29.47 Aligned_cols=41 Identities=15% Similarity=-0.032 Sum_probs=29.1
Q ss_pred CccEEEEEeccCCCCchhh-HHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 73 KSKLVLLVSHELSLSGGPL-LLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
+++||++-.... ++.. ...++++.|.+.|++|+++.+....
T Consensus 6 ~~k~I~lgiTGs---~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 6 AGKHVGFGLTGS---HCTYHEVLPQMERLVELGAKVTPFVTHTVQ 47 (201)
T ss_dssp TTCEEEEECCSC---GGGGGGTHHHHHHHHHTTCEEEEECSSCSC
T ss_pred CCCEEEEEEECh---HHHHHHHHHHHHHHhhCCCEEEEEEChhHH
Confidence 456777665332 2223 6899999999999999999865543
No 282
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=47.72 E-value=39 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=24.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+.|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 2 l~~k~~lVT-----Gas~GIG~aia~~la~~G~~V~~~~r~ 37 (264)
T 3tfo_A 2 VMDKVILIT-----GASGGIGEGIARELGVAGAKILLGARR 37 (264)
T ss_dssp CTTCEEEES-----STTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEe-----CCccHHHHHHHHHHHHCCCEEEEEECC
Confidence 344566666 233334567889999999999887643
No 283
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=47.62 E-value=26 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=28.1
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++++.++..-+-.|-.....+|+..|+++|++|.++-.+.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3455555433223444778899999999999999997554
No 284
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=47.28 E-value=1.2e+02 Score=25.07 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=64.7
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.+ .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. ..+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~lr~~~~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDER----DLADLITEALKKEMF--TVDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILKSMRESGVNT 75 (225)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 3566777652 356666666666553 3433332233333333 36887765431 3445666776664 367
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|+|+ .+.... ..+.+..|..|++..|-+ .+++.++|..++.
T Consensus 76 ~ii~------ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLM------LTALSDVEYRVKGLNMGADDYLPKPFD--LRELIARVRALIR 119 (225)
T ss_dssp CEEE------EESSCHHHHHHHTCCCCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEE------EeCCCCHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHh
Confidence 8883 222222 233455677899999888 9999999988865
No 285
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=47.26 E-value=2.1e+02 Score=27.88 Aligned_cols=162 Identities=7% Similarity=0.046 Sum_probs=85.5
Q ss_pred ccccceeeehhh-HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 202 LVAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
..+.++|.+... .+.+++.+.....++.+.+.-+++ +|.-... |.-...+...+.+.++++++..
T Consensus 206 qPdilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~D-vdtiY~v--pl~L~~qGl~~~~~~~l~l~~~----------- 271 (535)
T 3nva_A 206 QPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYD-VETSYEV--PIILESQKLVSKILSRLKLEDR----------- 271 (535)
T ss_dssp CCSEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEEC-CSCGGGH--HHHHHHHTHHHHHHHHTTCCCC-----------
T ss_pred CCCEEEEecCCCCCHHHHHhhhhhcCCChhceEecCC-CChHHHh--HHHHHHCCcHHHHHHHcCCCCC-----------
Confidence 445566655443 355666666666777777766664 4443222 1222222334567788888532
Q ss_pred cCCCHHHHHHHHHHHHHHHH--hhccCcCceEEEEEecCCCcchHHH---HHHHHHHHhcCCCCcEEEcccc--CC--H-
Q 011779 281 RGKGQDLFLHSFYESLELIK--EKKLEVPSVHAVIIGSDMNAQTKFE---SELRNYVMQKKIQDRVHFVNKT--LT--V- 350 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~--~~~~~~~~~~l~ivG~g~~~~~~~~---~~l~~~~~~~~l~~~v~~~g~~--~~--l- 350 (477)
...+. .+..+.+.+. . -...+++-++|.-..-...|. +.|+....+.+..-++.+.... ++ .
T Consensus 272 -~~~~~----~w~~~~~~~~~~~---~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~ 343 (535)
T 3nva_A 272 -QVDLT----DWISFVNNIKGIN---SKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKN 343 (535)
T ss_dssp -CCCCH----HHHHHHHHHHTTT---CCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSC
T ss_pred -CCCHH----HHHHHHHHhhccC---CCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccc
Confidence 22332 2333333222 1 124589999998643333344 3444444445443345555542 11 1
Q ss_pred -HHHHHhcCEEEEcCCCCCC----cccHHHHHHHHcCCCEE
Q 011779 351 -APYLAAIDVLVQNSQAWGE----CFGRITIEAMAFQLPVL 386 (477)
Q Consensus 351 -~~~~~~aDv~v~pS~~~~E----~~g~~~lEAma~G~PvI 386 (477)
.+.+..+|.+++|.-. .+ +.--.+-+|...|+|++
T Consensus 344 ~~~~L~~~DgIIlpGG~-G~~~~~g~i~~ir~a~~~~~PiL 383 (535)
T 3nva_A 344 LNEILGNVNGIIVLPGF-GSRGAEGKIKAIKYAREHNIPFL 383 (535)
T ss_dssp CTTTTTSCSEEEECCCC-SSTTHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhccCCCEEEECCCC-CCccHHHHHHHHHHHHHcCCcEE
Confidence 4578889999998742 21 11123445667899988
No 286
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=47.25 E-value=72 Score=27.16 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=43.4
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
...++|+++. |+ ......++.|.+.|.+|+|+.+.... .+.......++.++.-..... .....
T Consensus 29 L~gk~VLVVG------gG-~va~~ka~~Ll~~GA~VtVvap~~~~-------~l~~l~~~~~i~~i~~~~~~~--dL~~a 92 (223)
T 3dfz_A 29 LKGRSVLVVG------GG-TIATRRIKGFLQEGAAITVVAPTVSA-------EINEWEAKGQLRVKRKKVGEE--DLLNV 92 (223)
T ss_dssp CTTCCEEEEC------CS-HHHHHHHHHHGGGCCCEEEECSSCCH-------HHHHHHHTTSCEEECSCCCGG--GSSSC
T ss_pred cCCCEEEEEC------CC-HHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHHHcCCcEEEECCCCHh--HhCCC
Confidence 3456777764 33 67888899999999999999864321 122222333455543222111 12468
Q ss_pred cEEEEcCc
Q 011779 152 DLIVLNTA 159 (477)
Q Consensus 152 DiV~~~~~ 159 (477)
|+|++.+.
T Consensus 93 dLVIaAT~ 100 (223)
T 3dfz_A 93 FFIVVATN 100 (223)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998763
No 287
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=47.21 E-value=1.3e+02 Score=28.21 Aligned_cols=69 Identities=7% Similarity=-0.065 Sum_probs=47.0
Q ss_pred CceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh-------cCEEEEcCCCCCCcccHHHHHH
Q 011779 307 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 307 ~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~-------aDv~v~pS~~~~E~~g~~~lEA 378 (477)
+++.++- +-+. ..+..++.+++++++.. ....++.++++. .|+++..+- ...-.-.+.+|
T Consensus 63 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~I~tp--~~~H~~~~~~a 130 (417)
T 3v5n_A 63 DHYELVAGALSS------TPEKAEASGRELGLDPS----RVYSDFKEMAIREAKLKNGIEAVAIVTP--NHVHYAAAKEF 130 (417)
T ss_dssp SCEEEEEEECCS------SHHHHHHHHHHHTCCGG----GBCSCHHHHHHHHHHCTTCCSEEEECSC--TTSHHHHHHHH
T ss_pred CCcEEEEEEeCC------CHHHHHHHHHHcCCCcc----cccCCHHHHHhcccccCCCCcEEEECCC--cHHHHHHHHHH
Confidence 6677763 4332 24556777888876420 123678888887 899998876 44444567889
Q ss_pred HHcCCCEEe
Q 011779 379 MAFQLPVLL 387 (477)
Q Consensus 379 ma~G~PvI~ 387 (477)
+..|++|++
T Consensus 131 l~aGkhVl~ 139 (417)
T 3v5n_A 131 LKRGIHVIC 139 (417)
T ss_dssp HTTTCEEEE
T ss_pred HhCCCeEEE
Confidence 999999993
No 288
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=47.11 E-value=30 Score=32.07 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHH-Hhc
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TAL 149 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~ 149 (477)
+|++|+|.|+.- | ..=..++..|.+.||+|.++...... ...+...|+.. ........ ...
T Consensus 19 Mm~~mkIgiIGl-----G--~mG~~~A~~L~~~G~~V~v~dr~~~~---------~~~l~~~g~~~--~~s~~e~~~~a~ 80 (358)
T 4e21_A 19 YFQSMQIGMIGL-----G--RMGADMVRRLRKGGHECVVYDLNVNA---------VQALEREGIAG--ARSIEEFCAKLV 80 (358)
T ss_dssp ---CCEEEEECC-----S--HHHHHHHHHHHHTTCEEEEECSCHHH---------HHHHHTTTCBC--CSSHHHHHHHSC
T ss_pred hhcCCEEEEECc-----h--HHHHHHHHHHHhCCCEEEEEeCCHHH---------HHHHHHCCCEE--eCCHHHHHhcCC
Confidence 455689998852 2 45667889999999999988533211 12222334432 22233333 335
Q ss_pred CCcEEEEcCcch
Q 011779 150 KADLIVLNTAVA 161 (477)
Q Consensus 150 ~~DiV~~~~~~~ 161 (477)
+||+|++..+..
T Consensus 81 ~~DvVi~~vp~~ 92 (358)
T 4e21_A 81 KPRVVWLMVPAA 92 (358)
T ss_dssp SSCEEEECSCGG
T ss_pred CCCEEEEeCCHH
Confidence 679999876544
No 289
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=47.00 E-value=73 Score=29.03 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=48.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... ..+.+..++..+...|.+|+++++..-..+..............|.++......... ....|
T Consensus 154 ~gl~ia~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 226 (333)
T 1duv_G 154 NEMTLVYAGDA-----RNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKG--VEGAD 226 (333)
T ss_dssp GGCEEEEESCT-----TSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHH--HTTCS
T ss_pred CCcEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hCCCC
Confidence 34678887652 248899999999999999999997544333222221222233556555443333322 34789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 227 vvytd~ 232 (333)
T 1duv_G 227 FIYTDV 232 (333)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998864
No 290
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=46.58 E-value=1.2e+02 Score=28.33 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
.++.+.+..+|+++-.|. .--|.--+++.|+ ..|+|
T Consensus 255 ~~L~eav~~ADVlIG~Sa--p~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 255 GDLETALEGADFFIGVSR--GNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp SCHHHHHTTCSEEEECSC--SSCSCHHHHTTSC-SSCEE
T ss_pred hhHHHHHccCCEEEEeCC--CCccCHHHHHhcC-CCCEE
Confidence 458899999999998775 4334444666665 34555
No 291
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=46.51 E-value=30 Score=26.28 Aligned_cols=109 Identities=9% Similarity=0.084 Sum_probs=63.1
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE-ccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-cCC
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-FQL 383 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-~G~ 383 (477)
..+++|+-+.+ ..+..++...++.|.. |.. ...-++-.+.+. .-|++++=-.- ++.-|+.+++.+. .++
T Consensus 8 ~~rILiVdD~~----~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~~~~~DlvllDi~m-P~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 8 RLRVLVVEDES----MIAMLIEDTLCELGHE--VAATASRMQEALDIARKGQFDIAIIDVNL-DGEPSYPVADILAERNV 80 (123)
T ss_dssp CCCEEEESSST----TTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHHHCCSSEEEECSSS-SSCCSHHHHHHHHHTCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHcCCC
Confidence 45677777653 3456667777777652 221 111123333333 35777754331 3445666766663 578
Q ss_pred CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 384 PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
|||. .|..+......+-+..+++..|-+ .+++.++|.++.
T Consensus 81 pvI~------lTa~~~~~~~~~~g~~~yl~KP~~--~~~L~~~l~~~~ 120 (123)
T 2lpm_A 81 PFIF------ATGYGSKGLDTRYSNIPLLTKPFL--DSELEAVLVQIS 120 (123)
T ss_dssp SSCC------BCTTCTTSCCSSSCSCSCBCSSSS--HHHHHHHHSTTC
T ss_pred CEEE------EecCccHHHHHhCCCCcEEECCCC--HHHHHHHHHHHH
Confidence 9883 333333222334466789999988 999998887654
No 292
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=46.51 E-value=80 Score=22.77 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=61.7
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (477)
+++++.+.. .....+....+..|. .|......++....+. ..|++++-..- .+.-|..+++.+. ...|
T Consensus 2 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 74 (121)
T 2pl1_A 2 RVLVVEDNA----LLRHHLKVQIQDAGH--QVDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRRWRSNDVSLP 74 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHTTCCSC
T ss_pred eEEEEeCcH----HHHHHHHHHHhhcCC--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 455666542 355666666666553 3433332233333333 35887764431 3345666777765 3577
Q ss_pred EEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 385 VLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|. .+..+.. .+.+..|..+++..|-+ .+++...+..++.
T Consensus 75 ii~------~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 75 ILV------LTARESWQDKVEVLSAGADDYVTKPFH--IEEVMARMQALMR 117 (121)
T ss_dssp EEE------EESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEE------EecCCCHHHHHHHHHcCccceEECCCC--HHHHHHHHHHHHH
Confidence 772 2332221 23345677889999888 9999999987653
No 293
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=46.40 E-value=31 Score=26.01 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=63.4
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcC-CCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
..+++|+.+.. .....++...++.| . .|......++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 14 ~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 86 (135)
T 3snk_A 14 RKQVALFSSDP----NFKRDVATRLDALAIY--DVRVSETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALWA 86 (135)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTSSE--EEEEECGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGGT
T ss_pred CcEEEEEcCCH----HHHHHHHHHHhhcCCe--EEEEeccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhCC
Confidence 45777777753 45666777777665 3 3333332222222222 36777764331 33345555555443
Q ss_pred CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|. .+..... .+.+..|..+++..|-+ .+++..+|..++.
T Consensus 87 ~~~ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 132 (135)
T 3snk_A 87 TVPLIA------VSDELTSEQTRVLVRMNASDWLHKPLD--GKELLNAVTFHDT 132 (135)
T ss_dssp TCCEEE------EESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTC-
T ss_pred CCcEEE------EeCCCCHHHHHHHHHcCcHhhccCCCC--HHHHHHHHHHHhc
Confidence 678883 3333222 23345677899999988 9999999988764
No 294
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=46.31 E-value=73 Score=30.36 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=55.5
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
+++.|+++|-=.- |. ..+.++. ..++++++-+-+..+ ...+.+.+...++|++.--.+.+..+
T Consensus 19 ~~~rvgiIG~G~~--g~-~h~~~l~-----------~~~~~~lvav~d~~~---~~~~~~a~~~~~~g~~~~~~~~~~~~ 81 (444)
T 2ixa_A 19 KKVRIAFIAVGLR--GQ-THVENMA-----------RRDDVEIVAFADPDP---YMVGRAQEILKKNGKKPAKVFGNGND 81 (444)
T ss_dssp CCEEEEEECCSHH--HH-HHHHHHH-----------TCTTEEEEEEECSCH---HHHHHHHHHHHHTTCCCCEEECSSTT
T ss_pred CCceEEEEecCHH--HH-HHHHHHH-----------hCCCcEEEEEEeCCH---HHHHHHHHHHHhcCCCCCceeccCCC
Confidence 4577888874111 11 1233333 337888875554320 11222333333455542223333234
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++ ..|+++..+- ...-.-.+++||..|++|+
T Consensus 82 ~~~~ll~~~~vD~V~i~tp--~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 82 DYKNMLKDKNIDAVFVSSP--WEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp THHHHTTCTTCCEEEECCC--GGGHHHHHHHHHHTTCEEE
T ss_pred CHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCeEE
Confidence 7888887 4898888876 4444456778999999999
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=46.24 E-value=1.7e+02 Score=27.85 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=47.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------hhH-
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETI- 145 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------~~~- 145 (477)
..|+++.+ +-.|=...+..|+..|+++|+.|.+++.+...... ...+.......+++++..... ..+
T Consensus 101 ~vIlivG~--~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa--~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGI--QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGA--YHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp EEEEEECC--TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHH--HHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred eEEEEECc--CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH--HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 34444443 22454577889999999999999999865433221 122333334557777654221 111
Q ss_pred -HHhcCCcEEEEcCc
Q 011779 146 -NTALKADLIVLNTA 159 (477)
Q Consensus 146 -~~~~~~DiV~~~~~ 159 (477)
.....+|+|++-++
T Consensus 177 ~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTA 191 (443)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 12245899998775
No 296
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=45.78 E-value=53 Score=29.38 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=47.2
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
+.+++.++-+-+. ..+..++.+++++.+. .+++.++++..|+++..+- .....-.+.+|+..|++
T Consensus 28 ~~~~~~l~av~d~------~~~~~~~~a~~~~~~~-------~~~~~~ll~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 92 (308)
T 3uuw_A 28 KSERFEFVGAFTP------NKVKREKICSDYRIMP-------FDSIESLAKKCDCIFLHSS--TETHYEIIKILLNLGVH 92 (308)
T ss_dssp SCSSSEEEEEECS------CHHHHHHHHHHHTCCB-------CSCHHHHHTTCSEEEECCC--GGGHHHHHHHHHHTTCE
T ss_pred hCCCeEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHHhcCCEEEEeCC--cHhHHHHHHHHHHCCCc
Confidence 3477888755443 2455667777776531 3677788889999998876 44444567889999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 93 vl 94 (308)
T 3uuw_A 93 VY 94 (308)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 297
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=45.62 E-value=1.6e+02 Score=25.96 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCH--HHHHH
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV--APYLA 355 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l--~~~~~ 355 (477)
..+...+++.++.+ ..|+...+++.++ .....+.+.+++.|+++.|.+.|+-... ..++.
T Consensus 165 ~~~~~~~~~~~~l~-------~~~~~~ai~~~~d-----~~a~g~~~al~~~G~p~dv~vvg~d~~~~~~~~~~ 226 (313)
T 2h3h_A 165 DGARAVSLAEAALN-------AHPDLDAFFGVYA-----YNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVK 226 (313)
T ss_dssp CHHHHHHHHHHHHH-------HCTTCCEEEECST-----THHHHHHHHHHHTTCTTTSEEEEECCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-------HCcCceEEEEcCC-----CccHHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHH
Confidence 44555566666654 3466777777765 3444556667778888889999985332 24554
No 298
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.56 E-value=47 Score=25.54 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=43.7
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-hhHHH---hc
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETINT---AL 149 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~---~~ 149 (477)
+++|+++. ..+.-..+++.|.+.|++|+++...... .......|+.++..... ..... ..
T Consensus 7 ~~~viIiG-------~G~~G~~la~~L~~~g~~v~vid~~~~~---------~~~~~~~g~~~i~gd~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 7 CNHALLVG-------YGRVGSLLGEKLLASDIPLVVIETSRTR---------VDELRERGVRAVLGNAANEEIMQLAHLE 70 (140)
T ss_dssp CSCEEEEC-------CSHHHHHHHHHHHHTTCCEEEEESCHHH---------HHHHHHTTCEEEESCTTSHHHHHHTTGG
T ss_pred CCCEEEEC-------cCHHHHHHHHHHHHCCCCEEEEECCHHH---------HHHHHHcCCCEEECCCCCHHHHHhcCcc
Confidence 34566654 2367788999999999999999854321 22334457776543322 22222 35
Q ss_pred CCcEEEEcCcc
Q 011779 150 KADLIVLNTAV 160 (477)
Q Consensus 150 ~~DiV~~~~~~ 160 (477)
+.|+|++..+.
T Consensus 71 ~ad~vi~~~~~ 81 (140)
T 3fwz_A 71 CAKWLILTIPN 81 (140)
T ss_dssp GCSEEEECCSC
T ss_pred cCCEEEEECCC
Confidence 78999876643
No 299
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=45.44 E-value=50 Score=24.43 Aligned_cols=71 Identities=6% Similarity=-0.021 Sum_probs=43.2
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHc--CCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF--QLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~--G~PvI 386 (477)
+++++.|.... =.-+.+++.+++.|++-.+.-.+ ..++...+...|++++.-. =.+-..-++..+- |+||.
T Consensus 10 lL~C~aGmSTs-llv~km~~~a~~~gi~v~i~a~~-~~~~~~~~~~~DvvLLgPQ---V~y~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 10 LVLCAGSGTSA-QLANAINEGANLTEVRVIANSGA-YGAHYDIMGVYDLIILAPQ---VRSYYREMKVDAERLGIQIV 82 (108)
T ss_dssp EEEESSSSHHH-HHHHHHHHHHHHHTCSEEEEEEE-TTSCTTTGGGCSEEEECGG---GGGGHHHHHHHHTTTTCEEE
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCCceEEEEcc-hHHHHhhccCCCEEEEChH---HHHHHHHHHHHhhhcCCcEE
Confidence 44566664222 26678888899988853332222 2456667788999987654 1223444555554 89988
No 300
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=45.36 E-value=21 Score=34.44 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.7
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (477)
+++|+++. ++..|--.-+..|++.|+++ ||+|++++...
T Consensus 9 ~~~vv~~p--~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIP--APGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp CEEEEEEC--CSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCEEEEEc--CcccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 45777775 33345457789999999998 99999998654
No 301
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=45.06 E-value=25 Score=31.94 Aligned_cols=42 Identities=21% Similarity=-0.052 Sum_probs=25.0
Q ss_pred CCccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 67 ~~~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++...+++|+|++.. |....=..+++.|.+.|++|.++....
T Consensus 14 ~~~~~~~~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 55 (333)
T 2q1w_A 14 LVPRGSHMKKVFITG------ICGQIGSHIAELLLERGDKVVGIDNFA 55 (333)
T ss_dssp -------CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eeeecCCCCEEEEeC------CccHHHHHHHHHHHHCCCEEEEEECCC
Confidence 344455667776553 333455678888999999999998543
No 302
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=44.78 E-value=1.5e+02 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=27.7
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcE-EEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~ 113 (477)
.+..+|.++.+.....-....+..+.+++.+.|++ +.+....
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 50 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTN 50 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34567999987654322235566777788889999 6665443
No 303
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=44.73 E-value=1.3e+02 Score=27.78 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=47.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC-ChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
+.++|.++.....-....+++..++..+...|.+|.++++.... ................|..+.......... ...
T Consensus 189 ~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav--~~a 266 (359)
T 3kzn_A 189 RGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAY--AGA 266 (359)
T ss_dssp TTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHH--TTC
T ss_pred cCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHh--cCC
Confidence 34677766644322223488999999999999999999975321 111111112223344455554443333332 468
Q ss_pred cEEEEc
Q 011779 152 DLIVLN 157 (477)
Q Consensus 152 DiV~~~ 157 (477)
|+|+..
T Consensus 267 Dvvyt~ 272 (359)
T 3kzn_A 267 DVVYAK 272 (359)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 888775
No 304
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=44.70 E-value=38 Score=28.06 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=26.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+||++..... .| .....++++.|.+.|++|+++.+..
T Consensus 2 k~IllgvTGs--~a-a~k~~~l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 2 QKIALCITGA--SG-VIYGIKLLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp CEEEEEECSS--TT-HHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CEEEEEEECH--HH-HHHHHHHHHHHHHCCCEEEEEEChh
Confidence 5666655322 12 2568899999999999999988543
No 305
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=44.43 E-value=77 Score=28.92 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=48.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
..++|+++... ..+.+..++..+...|.+|.++++..-..+..............|.++......... ....|
T Consensus 154 ~gl~va~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 226 (335)
T 1dxh_A 154 HDISYAYLGDA-----RNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEA--VKGVD 226 (335)
T ss_dssp GGCEEEEESCC-----SSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHH--TTTCS
T ss_pred CCeEEEEecCC-----ccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hCCCC
Confidence 34688887652 238899999999999999999997543333222211222223456555433332222 35789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 227 vvytd~ 232 (335)
T 1dxh_A 227 FVHTDV 232 (335)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998853
No 306
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.22 E-value=1.6e+02 Score=25.54 Aligned_cols=215 Identities=13% Similarity=0.030 Sum_probs=106.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+..+|.++.+.....-.......+.+++.+.|+++.++......... ... .+. ....++|
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------~~~-l~~~~vd 66 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISE------REQ-------------ILE-FVHLKVD 66 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHH------HHH-------------HHH-HHHTTCS
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH------HHH-------------HHH-HHHcCCC
Confidence 45679999876532222245566777788899999988754322100 000 111 2246799
Q ss_pred EEEEcCcchh---hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhh-ccC
Q 011779 153 LIVLNTAVAG---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL-RIK 228 (477)
Q Consensus 153 iV~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 228 (477)
.|++...... ..+..+...++| ++..-...... .....+..+.........+++.+.+ |-.
T Consensus 67 giI~~~~~~~~~~~~~~~~~~~~iP-----vV~~~~~~~~~----------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~ 131 (293)
T 3l6u_A 67 AIFITTLDDVYIGSAIEEAKKAGIP-----VFAIDRMIRSD----------AVVSSITSNNQMIGEQLASYIKNELIKQT 131 (293)
T ss_dssp EEEEECSCTTTTHHHHHHHHHTTCC-----EEEESSCCCCT----------TCSEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCChHHHHHHHHHHHHcCCC-----EEEecCCCCCC----------cceeEEecCHHHHHHHHHHHHHHHhccCC
Confidence 8887653222 333444444443 33322221110 1123333444444444445554433 321
Q ss_pred ---CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccC
Q 011779 229 ---MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (477)
Q Consensus 229 ---~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 305 (477)
..++.++....+.... ....+.+++.+.-.+ .+.+.. .....-..+...+++.++.+ +
T Consensus 132 ~~~~~~i~~i~g~~~~~~~---------~~R~~gf~~~l~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~l~-------~ 192 (293)
T 3l6u_A 132 GRSTGRIVEITGTANVYTT---------NERHRGFLKGIENEP-TLSIVD--SVSGNYDPVTSERVMRQVID-------S 192 (293)
T ss_dssp SCSCEEEEEEECSTTCHHH---------HHHHHHHHHHHTTCT-TEEEEE--EEECTTCHHHHHHHHHHHHH-------T
T ss_pred CCCCceEEEEECCCCCchH---------HHHHHHHHHHHHhCC-CcEEee--eccCCCCHHHHHHHHHHHHH-------h
Confidence 1256666432221110 011233444443211 222221 12223355666677777665 5
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
+++...+++.++ .....+.+.+++.|+. .|.+.|+-
T Consensus 193 ~~~~~ai~~~~d-----~~a~g~~~al~~~g~~-di~vig~d 228 (293)
T 3l6u_A 193 GIPFDAVYCHND-----DIAMGVLEALKKAKIS-GKIVVGID 228 (293)
T ss_dssp TCCCSEEEESSH-----HHHHHHHHHHHHTTCC-CCEEEEEE
T ss_pred CCCCCEEEECCc-----hHHHHHHHHHHhCCCC-CeEEEEec
Confidence 577777887765 4455667778888887 78888875
No 307
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=43.90 E-value=87 Score=22.46 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=60.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (477)
+++++.+.. .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (120)
T 2a9o_A 3 KILIVDDEK----PISDIIKFNMTKEGY--EVVTAFNGREALEQFEAEQPDIIILDLML-PEIDGLEVAKTIRKTSSVPI 75 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHCCCCE
T ss_pred eEEEEcCCH----HHHHHHHHHHHhcCc--EEEEecCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHhCCCCCE
Confidence 456666652 345666666666554 3433332223223332 36887765431 3334566665553 56788
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|. .+..... .+.+..|..+++..|-+ .+++.+.+..++.
T Consensus 76 i~------~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 76 LM------LSAKDSEFDKVIGLELGADDYVTKPFS--NRELQARVKALLR 117 (120)
T ss_dssp EE------EESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EE------EecCCchHHHHHHHhCCHhheEeCCCC--HHHHHHHHHHHHc
Confidence 72 2222221 22344577889999888 9999999987764
No 308
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=43.85 E-value=30 Score=30.12 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=27.3
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+++.++..-+-.|-.....+|+..|+++|++|.++-.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 444444333223445778999999999999999987554
No 309
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=43.63 E-value=28 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=26.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|||+++..+. .|..+..+..+++.|.+.|++|.++.
T Consensus 1 mki~iiy~S~-~Gnt~~~a~~i~~~l~~~g~~v~~~~ 36 (147)
T 1f4p_A 1 PKALIVYGST-TGNTEYTAETIARELADAGYEVDSRD 36 (147)
T ss_dssp CEEEEEEECS-SSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEEECC-cCHHHHHHHHHHHHHHhcCCeeEEEe
Confidence 4677665333 25555778889999998999998875
No 310
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=43.52 E-value=29 Score=29.23 Aligned_cols=40 Identities=23% Similarity=0.096 Sum_probs=26.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (477)
+++++|++..... .+.....++++.|.+ .|++|+++....
T Consensus 17 l~~k~IllgvTGs---iaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 17 ERKFHVLVGVTGS---VAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp CSSEEEEEEECSS---GGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred cCCCEEEEEEeCh---HHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 3456777666432 112456899999998 899999998554
No 311
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=43.46 E-value=77 Score=29.27 Aligned_cols=77 Identities=8% Similarity=0.017 Sum_probs=48.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
.++|+++... -.+++..++..+...|.+|.++++..-..+..............|..+.......... ...|+
T Consensus 181 gl~ia~vGD~-----~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav--~~aDv 253 (358)
T 4h31_A 181 DIQFAYLGDA-----RNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGV--QGCDF 253 (358)
T ss_dssp GCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHH--TTCSE
T ss_pred ceEEEecCCC-----CcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHh--ccCcE
Confidence 4688887742 1378999999999999999999965433333332223333344566665444433332 46888
Q ss_pred EEEc
Q 011779 154 IVLN 157 (477)
Q Consensus 154 V~~~ 157 (477)
|+.-
T Consensus 254 vyt~ 257 (358)
T 4h31_A 254 LYTD 257 (358)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8864
No 312
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=43.46 E-value=1.8e+02 Score=26.05 Aligned_cols=151 Identities=10% Similarity=0.017 Sum_probs=78.0
Q ss_pred EEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC-ceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccccCC
Q 011779 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLT 349 (477)
Q Consensus 272 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~ 349 (477)
.++.+..=.+.|.++.|++.++.- | .+.+-..|.|. ...-..+.+.+..|+. ..|-|.|..+-
T Consensus 113 ~~lvv~~ds~~~sl~dL~~~ak~~-----------p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a 177 (312)
T 2f5x_A 113 MTIIARGDFPPNNIKELAEYVKKN-----------ADKISLANAGIGA----ASHLCGTMLVEALGVNLLTIPYKGTAPA 177 (312)
T ss_dssp EEEEECTTCSCCSHHHHHHHHHHH-----------GGGCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhC-----------CCceEEeCCCCCc----HHHHHHHHHHHHHCCCeEEeccCChHHH
Confidence 344455556789999988877642 4 34554444442 1222233444555663 23455554444
Q ss_pred HHHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCC-EEeec--ccc-ccccCC-----CceEEeecCCceeeecCCCC-
Q 011779 350 VAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLLQK--CLY-QGTAAG-----GTTEIVVNGTTGLLHPVGKE- 418 (477)
Q Consensus 350 l~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~~~--~~~-~~~~~g-----g~~e~v~~~~~G~l~~~~d~- 418 (477)
+..++. ..|+.+.... .+.+.+..|.- +++.. ... ...+++ |.+++....-.|++++.+-+
T Consensus 178 ~~aL~~G~VD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~ 249 (312)
T 2f5x_A 178 MNDLLGKQVDLMCDQTT--------NTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK 249 (312)
T ss_dssp HHHHHTTSSCEEEEEHH--------HHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH
T ss_pred HHHHHcCCccEEEechH--------HHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCH
Confidence 555554 4787775432 35566667753 33110 000 001111 12222112236788887741
Q ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 011779 419 -GITPLAKNIVKLATHVERRLTMGKRGY 445 (477)
Q Consensus 419 -~~~~la~~i~~ll~~~~~~~~~~~~a~ 445 (477)
-++.|.+++.+++++++.++.+.+.+.
T Consensus 250 ~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 250 PVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 134566777777779998887766543
No 313
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=43.35 E-value=45 Score=30.63 Aligned_cols=75 Identities=7% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
|+++||.++.. |. .-..++..|.+. |+++..++...... ........|++. ......+....+
T Consensus 3 ~~~~~vgiiG~----G~---~g~~~~~~l~~~~~~~lvav~d~~~~~-------~~~~~~~~g~~~--~~~~~~~l~~~~ 66 (354)
T 3db2_A 3 YNPVGVAAIGL----GR---WAYVMADAYTKSEKLKLVTCYSRTEDK-------REKFGKRYNCAG--DATMEALLARED 66 (354)
T ss_dssp CCCEEEEEECC----SH---HHHHHHHHHTTCSSEEEEEEECSSHHH-------HHHHHHHHTCCC--CSSHHHHHHCSS
T ss_pred CCcceEEEEcc----CH---HHHHHHHHHHhCCCcEEEEEECCCHHH-------HHHHHHHcCCCC--cCCHHHHhcCCC
Confidence 45678998873 22 334567777776 78877666433211 111112235543 455566666678
Q ss_pred CcEEEEcCcchh
Q 011779 151 ADLIVLNTAVAG 162 (477)
Q Consensus 151 ~DiV~~~~~~~~ 162 (477)
+|+|++.++...
T Consensus 67 ~D~V~i~tp~~~ 78 (354)
T 3db2_A 67 VEMVIITVPNDK 78 (354)
T ss_dssp CCEEEECSCTTS
T ss_pred CCEEEEeCChHH
Confidence 999999886543
No 314
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=43.22 E-value=26 Score=27.35 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (477)
|+|+++-. ...|..+..+..+++.|.+.|++|.++
T Consensus 2 ~ki~I~Y~-S~tGnT~~~A~~ia~~l~~~g~~v~~~ 36 (147)
T 2hna_A 2 ADITLISG-STLGGAEYVAEHLAEKLEEAGFTTETL 36 (147)
T ss_dssp CSEEEECC-TTSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEE-CCchHHHHHHHHHHHHHHHCCCceEEe
Confidence 45665542 223666788999999999999998876
No 315
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=43.20 E-value=32 Score=29.31 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=28.9
Q ss_pred CccEEEEEeccCC---CCchh-hHHHHHHHHHHhC--Cc-EEEEEecC
Q 011779 73 KSKLVLLVSHELS---LSGGP-LLLMELAFLLRGV--GT-KVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~---~gG~~-~~~~~l~~~L~~~--G~-~V~v~~~~ 113 (477)
.|||||++..+.. .++.. ..+..+++.+.+. |+ +|.++-..
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~ 50 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLY 50 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETT
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECc
Confidence 3578999987765 45555 4455677777765 68 99998854
No 316
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=43.14 E-value=87 Score=24.15 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--eccchhhHHHhc
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAKGQETINTAL 149 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~ 149 (477)
|++++|||||.... .-+..+..+.+.+.. ..+.+.+.+.... .....-...+...|+.+- ..+...... ..
T Consensus 1 M~~~~VLFVC~gN~--cRSpmAEai~~~~~~--~~~~v~SAGt~~~--~~~p~a~~~l~~~Gid~s~~~sr~l~~~~-~~ 73 (139)
T 1jl3_A 1 MENKIIYFLCTGNS--CRSQMAEGWAKQYLG--DEWKVYSAGIEAH--GLNPNAVKAMKEVGIDISNQTSDIIDSDI-LN 73 (139)
T ss_dssp --CEEEEEEESSSS--SHHHHHHHHHHHHSC--TTEEEEEEESSCC--CCCHHHHHHHHHTTCCCTTCCCCBCCHHH-HT
T ss_pred CCCCeEEEEcCCch--HHHHHHHHHHHHhCC--CCEEEEcCcCCCC--CCCHHHHHHHHHcCCCcccCccCcCCHHH-hh
Confidence 34568999996432 222445555565543 3455555222111 111122345566787763 222222222 35
Q ss_pred CCcEEEEcCc
Q 011779 150 KADLIVLNTA 159 (477)
Q Consensus 150 ~~DiV~~~~~ 159 (477)
.+|+|++-..
T Consensus 74 ~~D~Ii~m~~ 83 (139)
T 1jl3_A 74 NADLVVTLCG 83 (139)
T ss_dssp TCSEEEECSH
T ss_pred cCCEEEEeCc
Confidence 7999998743
No 317
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=43.03 E-value=1.5e+02 Score=26.15 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.3
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 29 k~~lVT-----Gas~GIG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 29 KVAFIT-----GAARGQGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp CEEEEE-----STTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 566666 233334567889999999999988744
No 318
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=42.96 E-value=1.3e+02 Score=27.78 Aligned_cols=82 Identities=9% Similarity=0.062 Sum_probs=46.8
Q ss_pred CccE--EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhc
Q 011779 73 KSKL--VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (477)
Q Consensus 73 ~~~~--Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 149 (477)
..++ |+++.. ...|| .+.+..++..+...|.+|+++++. .-..+..............|..+......... ..
T Consensus 189 ~glkvvva~vGD-l~~~~-nrva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ea--v~ 264 (359)
T 1zq6_A 189 RGKKYVLTWTYH-PKPLN-TAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSA--YA 264 (359)
T ss_dssp TTCEEEEEECCC-SSCCC-SHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHH--HT
T ss_pred cCCeeEEEEEec-ccccc-cchHHHHHHHHHHcCCEEEEEcCccccCCCHHHHHHHHHHHHHcCCeEEEECCHHHH--hc
Confidence 3567 555543 33334 689999999999999999999976 32222221111122222445555433333322 24
Q ss_pred CCcEEEEcC
Q 011779 150 KADLIVLNT 158 (477)
Q Consensus 150 ~~DiV~~~~ 158 (477)
..|+|+...
T Consensus 265 ~aDvVyt~~ 273 (359)
T 1zq6_A 265 GADVVYAKS 273 (359)
T ss_dssp TCSEEEEEC
T ss_pred CCCEEEECC
Confidence 688888753
No 319
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=42.56 E-value=60 Score=24.78 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=41.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--hhHHH--hc
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT--AL 149 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~--~~ 149 (477)
+++|+++.. ...-..+++.|.+.|++|.++..... ........+..++..... ..+.. ..
T Consensus 6 ~~~v~I~G~-------G~iG~~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~ 69 (141)
T 3llv_A 6 RYEYIVIGS-------EAAGVGLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLE 69 (141)
T ss_dssp CCSEEEECC-------SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCT
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCcc
Confidence 456766641 24667899999999999999874321 122233346665543222 22222 24
Q ss_pred CCcEEEEcCc
Q 011779 150 KADLIVLNTA 159 (477)
Q Consensus 150 ~~DiV~~~~~ 159 (477)
+.|+|++..+
T Consensus 70 ~~d~vi~~~~ 79 (141)
T 3llv_A 70 GVSAVLITGS 79 (141)
T ss_dssp TCSEEEECCS
T ss_pred cCCEEEEecC
Confidence 7899888765
No 320
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=42.52 E-value=25 Score=31.00 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|++|+|++.. . | ..=..+++.|.++||+|++++....
T Consensus 1 M~~~~ilVtG---a-G---~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 1 MSLSKILIAG---C-G---DLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp -CCCCEEEEC---C-S---HHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CCCCcEEEEC---C-C---HHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5567887663 1 3 3445778888999999999986543
No 321
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=42.49 E-value=27 Score=27.47 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--hhHHH--
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT-- 147 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~-- 147 (477)
|..++|+++. +.+.-..+++.|.+.|++|+++....... . ..+. .....|+.++..... ..+.+
T Consensus 1 ~~~~~vlI~G-------~G~vG~~la~~L~~~g~~V~vid~~~~~~-~---~~~~-~~~~~~~~~i~gd~~~~~~l~~a~ 68 (153)
T 1id1_A 1 HRKDHFIVCG-------HSILAINTILQLNQRGQNVTVISNLPEDD-I---KQLE-QRLGDNADVIPGDSNDSSVLKKAG 68 (153)
T ss_dssp CCCSCEEEEC-------CSHHHHHHHHHHHHTTCCEEEEECCCHHH-H---HHHH-HHHCTTCEEEESCTTSHHHHHHHT
T ss_pred CCCCcEEEEC-------CCHHHHHHHHHHHHCCCCEEEEECCChHH-H---HHHH-HhhcCCCeEEEcCCCCHHHHHHcC
Confidence 4456676663 23677889999999999999998542110 0 0011 112235666543222 22222
Q ss_pred hcCCcEEEEcCc
Q 011779 148 ALKADLIVLNTA 159 (477)
Q Consensus 148 ~~~~DiV~~~~~ 159 (477)
..+.|+|++.+.
T Consensus 69 i~~ad~vi~~~~ 80 (153)
T 1id1_A 69 IDRCRAILALSD 80 (153)
T ss_dssp TTTCSEEEECSS
T ss_pred hhhCCEEEEecC
Confidence 357899988764
No 322
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=42.43 E-value=12 Score=31.31 Aligned_cols=40 Identities=13% Similarity=-0.006 Sum_probs=25.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEE-EEec
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WITI 112 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~ 112 (477)
++|||+++..+...++....+.+.+..+.+.|++|. ++..
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL 43 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSI 43 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCS
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeH
Confidence 468999999877776655444443333445689998 6553
No 323
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=42.42 E-value=69 Score=29.17 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=45.2
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
+++.++-+-+. ..+..++.+++++. .. .+++.++++ .+|+++..+- .....-.+.+|+..|++
T Consensus 27 ~~~~l~av~d~------~~~~~~~~a~~~g~----~~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 91 (344)
T 3euw_A 27 PDLELVVIADP------FIEGAQRLAEANGA----EA---VASPDEVFARDDIDGIVIGSP--TSTHVDLITRAVERGIP 91 (344)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHTTTC----EE---ESSHHHHTTCSCCCEEEECSC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEEeCC--chhhHHHHHHHHHcCCc
Confidence 77888755443 24556666776652 11 267888888 7899998876 44444567889999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 92 v~ 93 (344)
T 3euw_A 92 AL 93 (344)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 324
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=42.29 E-value=53 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=23.3
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.++|++|.+....
T Consensus 29 k~vlVT-----Gas~gIG~aia~~la~~G~~V~~~~~~ 61 (269)
T 4dmm_A 29 RIALVT-----GASRGIGRAIALELAAAGAKVAVNYAS 61 (269)
T ss_dssp CEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566666 333345567899999999999887653
No 325
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=42.18 E-value=1.1e+02 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=24.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
.|+++|+ ||..-.=..+++.|.++|++|.++.....
T Consensus 9 ~k~vlVT-----Gas~GIG~aia~~l~~~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 9 GKTMFIS-----GGSRGIGLAIAKRVAADGANVALVAKSAE 44 (285)
T ss_dssp TCEEEEE-----SCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 3455666 22233456789999999999988875543
No 326
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=42.12 E-value=82 Score=28.47 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=45.6
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
++++++-+-+. ..+..++.+++++.+ .+++.++++ ..|+++..+- .....-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 26 ADARLVAVADA------FPAAAEAIAGAYGCE--------VRTIDAIEAAADIDAVVICTP--TDTHADLIERFARAGKA 89 (331)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCE--------ECCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC--------cCCHHHHhcCCCCCEEEEeCC--chhHHHHHHHHHHcCCc
Confidence 77888755443 245566777777542 367888888 7899998876 44444567889999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 90 v~ 91 (331)
T 4hkt_A 90 IF 91 (331)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 327
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=42.03 E-value=94 Score=22.34 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=60.8
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (477)
+++++.+.. .....++...+..|.. .+......++....+. ..|++++-..- .+.-|..+++.+. .+.|
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~~-vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 4 RVLIVDDAA----FMRMMLKDIITKAGYE-VAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCC
T ss_pred eEEEEcCcH----HHHHHHHHHHhhcCcE-EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHhhCCCCe
Confidence 566777652 3556667766665542 1222222233333332 36887765431 3334666666653 4678
Q ss_pred EEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 385 VLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
+|. .+..... .+....|..+++..|-+ .+++.+.+.+++
T Consensus 78 ii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIV------CSAMGQQAMVIEAIKAGAKDFIVKPFQ--PSRVVEALNKVS 119 (120)
T ss_dssp EEE------EECTTCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHC
T ss_pred EEE------EeCCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHh
Confidence 772 2333222 23344577889999888 999999887754
No 328
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=41.89 E-value=1e+02 Score=26.31 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=62.8
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc--CCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QLP 384 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~P 384 (477)
.+++|+.+.. .....++...+..+. .|.......+....+. ..|++++-..- .+.-|+.+++.+.. .+|
T Consensus 38 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~DlvllD~~l-p~~~G~~l~~~lr~~~~~~ 110 (249)
T 3q9s_A 38 QRILVIEDDH----DIANVLRMDLTDAGY--VVDHADSAMNGLIKAREDHPDLILLDLGL-PDFDGGDVVQRLRKNSALP 110 (249)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEEECCS-CHHHHHHHHHHHHTTCCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHcCCCCC
Confidence 4666776652 345556666655542 3333222233233332 25777765431 34456666666653 477
Q ss_pred EEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 385 VLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 385 vI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
||+ .|.... ..+.+..|..|++..|-+ .+++.++|..++.
T Consensus 111 iI~------lt~~~~~~~~~~a~~~Ga~~yl~Kp~~--~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 111 IIV------LTARDTVEEKVRLLGLGADDYLIKPFH--PDELLARVKVQLR 153 (249)
T ss_dssp EEE------EESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred EEE------EECCCCHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHh
Confidence 773 233222 223345678899999988 9999999998875
No 329
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=41.87 E-value=72 Score=28.84 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=21.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEec
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~ 112 (477)
|++|+|++.. |....=..+++.|.+.| ++|..+..
T Consensus 22 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~~~v~~~~~ 58 (346)
T 4egb_A 22 SNAMNILVTG------GAGFIGSNFVHYMLQSYETYKIINFDA 58 (346)
T ss_dssp --CEEEEEET------TTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred cCCCeEEEEC------CccHHHHHHHHHHHhhCCCcEEEEEec
Confidence 4556766543 33355668888999999 55555543
No 330
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=41.76 E-value=17 Score=33.32 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=27.2
Q ss_pred CCccEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|++|||+++....+. -... .....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (343)
T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGIT 44 (343)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEc
Confidence 557889998843211 0000 14567899999999999988744
No 331
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=41.54 E-value=60 Score=27.09 Aligned_cols=104 Identities=10% Similarity=0.085 Sum_probs=61.4
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--c-CCCE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F-QLPV 385 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~-G~Pv 385 (477)
++|+.+.+ .....+....+..|. .|......++....+. ..|++++|. .-|+.+++.+. . .+|+
T Consensus 3 ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilp~-----~~g~~~~~~lr~~~~~~~i 71 (223)
T 2hqr_A 3 VLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSIVV 71 (223)
T ss_dssp EEEECSCH----HHHHHHHHHHGGGTC--CEEEESSHHHHHHHHTTSCCSEEEECC-----TTHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCH----HHHHHHHHHHHHCCc--EEEEECCHHHHHHHHhcCCCCEEEeCC-----CCHHHHHHHHHhCCCCCcE
Confidence 45565542 356666777766554 3443333333333333 358888443 23556665554 3 7888
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCC-CCCHHHHHHHHHHHHhC
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 433 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 433 (477)
|+ .+..... .+.+..|..|++..|- + .+++.++|..++..
T Consensus 72 i~------lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~--~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 72 LV------SSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 115 (223)
T ss_dssp EE------EESSCCHHHHHHHHHHTCSEEEETTCSC--THHHHHHHHHHTSS
T ss_pred EE------EECCCCHHHHHHHHHcCCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 83 3333221 2334567889999988 8 89999999988764
No 332
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=41.43 E-value=1.9e+02 Score=25.76 Aligned_cols=214 Identities=10% Similarity=0.010 Sum_probs=101.7
Q ss_pred CCccEEEEEecc--CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhc
Q 011779 72 MKSKLVLLVSHE--LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (477)
Q Consensus 72 ~~~~~Il~v~~~--~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 149 (477)
.+..+|.++.+. ....-....+..+.+++.+.|+++.++......... ... . ......
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------~-~~l~~~ 118 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEE------RQA-------------I-QYLLDL 118 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHH------HHH-------------H-HHHHHT
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH------HHH-------------H-HHHHhC
Confidence 345679999876 332222355667777888999999888744322100 000 1 122345
Q ss_pred CCcEEEEcCcchh-h-HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc
Q 011779 150 KADLIVLNTAVAG-K-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 227 (477)
Q Consensus 150 ~~DiV~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (477)
++|-|++...... . ....+....+ |++..-..... .....+..+.........+++.+ .
T Consensus 119 ~vdgiIi~~~~~~~~~~~~~~~~~~i-----PvV~~~~~~~~-----------~~~~~V~~D~~~~~~~a~~~L~~---~ 179 (338)
T 3dbi_A 119 RCDAIMIYPRFLSVDEIDDIIDAHSQ-----PIMVLNRRLRK-----------NSSHSVWCDHKQTSFNAVAELIN---A 179 (338)
T ss_dssp TCSEEEECCSSSCHHHHHHHHHHCSS-----CEEEESSCCSS-----------SGGGEECBCHHHHHHHHHHHHHH---T
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCC-----CEEEEcCCCCC-----------CCCCEEEEChHHHHHHHHHHHHH---C
Confidence 7898887643221 1 2222222223 33332221111 01122333333333333344332 2
Q ss_pred CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC
Q 011779 228 KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (477)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (477)
...++.++....+...... .....+ +.-++.|++.+...+ ..+.. ..+...+++.++.+ ..+
T Consensus 180 G~~~I~~i~~~~~~~~~~~-----R~~Gf~-~al~~~g~~~~~~~~-~~~~~----~~~~~~~~~~~ll~-------~~~ 241 (338)
T 3dbi_A 180 GHQEIAFLTGSMDSPTSIE-----RLAGYK-DALAQHGIALNEKLI-ANGKW----TPASGAEGVEMLLE-------RGA 241 (338)
T ss_dssp TCCSEEEECCCTTCHHHHH-----HHHHHH-HHHHHTTCCCCGGGE-ECCCS----SHHHHHHHHHHHHH-------TTC
T ss_pred CCCEEEEEeCCCCCccHHH-----HHHHHH-HHHHHCCCCCCcceE-EeCCC----CHHHHHHHHHHHHc-------CCC
Confidence 3456777754322211100 001112 223345665443323 23333 33444556666654 446
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
+...+++.++ .....+.+.+++.|+ ++.|.+.|+.
T Consensus 242 ~~~ai~~~nd-----~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 242 KFSALVASND-----DMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp CCSEEEESSH-----HHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCeEEEECCh-----HHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 6677777765 344455666777776 4789999985
No 333
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=41.37 E-value=1.4e+02 Score=28.87 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=47.7
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
.++|+|+. . ||.. +..+|+.|.++|++|.+.-.... .....+...|+++..-..... ...+|+
T Consensus 22 ~~~v~viG--i--G~sG--~s~~A~~l~~~G~~V~~~D~~~~--------~~~~~l~~~gi~~~~g~~~~~---~~~~d~ 84 (494)
T 4hv4_A 22 VRHIHFVG--I--GGAG--MGGIAEVLANEGYQISGSDLAPN--------SVTQHLTALGAQIYFHHRPEN---VLDASV 84 (494)
T ss_dssp CCEEEEET--T--TSTT--HHHHHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCEEESSCCGGG---GTTCSE
T ss_pred CCEEEEEE--E--cHhh--HHHHHHHHHhCCCeEEEEECCCC--------HHHHHHHHCCCEEECCCCHHH---cCCCCE
Confidence 46787766 2 3322 33468999999999998753322 123455667888764322222 246899
Q ss_pred EEEcC--cchhhHHHHHhhhCCC
Q 011779 154 IVLNT--AVAGKWLDAVLKEDVP 174 (477)
Q Consensus 154 V~~~~--~~~~~~~~~~~~~~~~ 174 (477)
|+... +.....+..+...++|
T Consensus 85 vV~Spgi~~~~p~~~~a~~~gi~ 107 (494)
T 4hv4_A 85 VVVSTAISADNPEIVAAREARIP 107 (494)
T ss_dssp EEECTTSCTTCHHHHHHHHTTCC
T ss_pred EEECCCCCCCCHHHHHHHHCCCC
Confidence 98875 2222344444444443
No 334
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=41.36 E-value=27 Score=31.13 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=26.6
Q ss_pred ccEEEEEeccCCCCchhh---HHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPL---LLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~---~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|+|+++...... .-+. ....++++|.++||+|.++...
T Consensus 2 ~~~i~il~gg~s~-e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSA-EREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSST-THHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCc-cceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 5789988743211 0011 3467999999999999998754
No 335
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=41.28 E-value=49 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.++++|+++.... .....+...|.+.|++|..+.
T Consensus 12 ~~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 45 (153)
T 3hv2_A 12 TRRPEILLVDSQE------VILQRLQQLLSPLPYTLHFAR 45 (153)
T ss_dssp CSCCEEEEECSCH------HHHHHHHHHHTTSSCEEEEES
T ss_pred cCCceEEEECCCH------HHHHHHHHHhcccCcEEEEEC
Confidence 4567899988543 456677888888899887554
No 336
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=41.19 E-value=88 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=24.8
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEE
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (477)
.+++++|+++.... .....+...|...|++|..+
T Consensus 20 ~~~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 53 (250)
T 3r0j_A 20 TTPEARVLVVDDEA------NIVELLSVSLKFQGFEVYTA 53 (250)
T ss_dssp CCSSCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEEECCH------HHHHHHHHHHHHCCCEEEEE
Confidence 35568999998653 45566777888889998754
No 337
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.19 E-value=1.7e+02 Score=25.09 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=100.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+..+|.++.+.....-....+..+.+++.+.|+++.++......... .. .-......++|
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~-------~~-------------~~~~l~~~~vd 65 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIERE-------KT-------------LLRAIGSRGFD 65 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHH-------HH-------------HHHHHHTTTCS
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH-------HH-------------HHHHHHhCCCC
Confidence 34679999877533223355667777888999999988755332100 00 01122346899
Q ss_pred EEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCe
Q 011779 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (477)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i 232 (477)
-|++........+..+...++ |++..-..... .....+..+.........+++.+. ...++
T Consensus 66 giIi~~~~~~~~~~~l~~~~i-----PvV~i~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~---G~~~I 126 (276)
T 3jy6_A 66 GLILQSFSNPQTVQEILHQQM-----PVVSVDREMDA-----------CPWPQVVTDNFEAAKAATTAFRQQ---GYQHV 126 (276)
T ss_dssp EEEEESSCCHHHHHHHHTTSS-----CEEEESCCCTT-----------CSSCEEECCHHHHHHHHHHHHHTT---TCCEE
T ss_pred EEEEecCCcHHHHHHHHHCCC-----CEEEEecccCC-----------CCCCEEEEChHHHHHHHHHHHHHc---CCCeE
Confidence 888875433333344444444 34332221110 012233333333344444444332 33567
Q ss_pred EEEecCCc-hhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE
Q 011779 233 YVVHLGNS-KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (477)
Q Consensus 233 ~vi~ngvd-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (477)
.++....+ .... ....+.+++.+.-. .. +.+.+. .-+.+...+++.++.. ..++...
T Consensus 127 ~~i~~~~~~~~~~---------~~R~~gf~~~l~~~--~~-~~~~~~---~~~~~~~~~~~~~~l~-------~~~~~~a 184 (276)
T 3jy6_A 127 VVLTSELELSRTR---------QERYRGILAAAQDV--DV-LEVSES---SYNHSEVHQRLTQLIT-------QNDQKTV 184 (276)
T ss_dssp EEEEECSTTCHHH---------HHHHHHHHTTCSEE--EE-EEECSS---SCCHHHHHHHHHHHHH-------SSSSCEE
T ss_pred EEEecCCCCCchH---------HHHHHHHHHHHHhC--Cc-EEEecc---ccCCcHHHHHHHHHHh-------cCCCCcE
Confidence 66654332 1110 01123344433211 11 221111 0122223333333333 4577888
Q ss_pred EEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 312 VIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 312 ~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
+++.+. .....+.+.+++.|+ ++.|.+.|+-
T Consensus 185 i~~~~d-----~~a~g~~~al~~~g~~vP~di~vig~d 217 (276)
T 3jy6_A 185 AFALKE-----RWLLEFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp EEESSH-----HHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred EEEeCc-----HHHHHHHHHHHHcCCCCCCcEEEEEEC
Confidence 888765 444456666777776 4788888874
No 338
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=41.07 E-value=25 Score=32.43 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=26.3
Q ss_pred cCCCccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCC
Q 011779 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKP 115 (477)
Q Consensus 70 ~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~ 115 (477)
..|++|+|++.. |....=..+++.|.++ ||+|+++.....
T Consensus 20 ~~m~~~~vlVtG------atG~iG~~l~~~L~~~~g~~V~~~~r~~~ 60 (372)
T 3slg_A 20 GSMKAKKVLILG------VNGFIGHHLSKRILETTDWEVFGMDMQTD 60 (372)
T ss_dssp ---CCCEEEEES------CSSHHHHHHHHHHHHHSSCEEEEEESCCT
T ss_pred cccCCCEEEEEC------CCChHHHHHHHHHHhCCCCEEEEEeCChh
Confidence 346677887653 3334556788888887 999999986543
No 339
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=41.05 E-value=1.3e+02 Score=27.23 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=47.0
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
.++++++-+-+. ..+..++.++++++... ..+++.++++. .|+++..+- .....-.+.+|+..|+
T Consensus 25 ~~~~~l~av~d~------~~~~~~~~~~~~g~~~~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk 91 (344)
T 3mz0_A 25 LSGAEIVAVTDV------NQEAAQKVVEQYQLNAT-----VYPNDDSLLADENVDAVLVTSW--GPAHESSVLKAIKAQK 91 (344)
T ss_dssp CSSEEEEEEECS------SHHHHHHHHHHTTCCCE-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCCcEEEEEEcC------CHHHHHHHHHHhCCCCe-----eeCCHHHHhcCCCCCEEEECCC--chhHHHHHHHHHHCCC
Confidence 377888755543 24556777777764211 12678888876 899998876 4444456788999999
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
+|+
T Consensus 92 ~vl 94 (344)
T 3mz0_A 92 YVF 94 (344)
T ss_dssp EEE
T ss_pred cEE
Confidence 999
No 340
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=40.87 E-value=49 Score=30.07 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=53.2
Q ss_pred HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE-eecC------CceeeecCCCCCHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI-VVNG------TTGLLHPVGKEGITPLA 424 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~-v~~~------~~G~l~~~~d~~~~~la 424 (477)
.-++.||++|..... .|+|--.++++.. +.++| .... |+.-+ ..++ +--+..+|.+ ...++
T Consensus 90 ~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v-------~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n--~~~~a 157 (321)
T 1xvl_A 90 VKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSV-------VLTE-GIEPIPIADGPYTDKPNPHAWMSPRN--ALVYV 157 (321)
T ss_dssp HHHHTCSEEEECCTT-SSTTHHHHHHTSS-SCCEE-------ETTT-TCCCCBCCSSSSTTSBCCCGGGSHHH--HHHHH
T ss_pred HHHhcCCEEEECCCC-hHHHHHHHHHhcC-CCcEE-------EccC-CcccccccccCCCCCCCCCcCCCHHH--HHHHH
Confidence 458899999988764 7888777888766 66766 2222 22111 0000 1112334434 56677
Q ss_pred HHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 425 KNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 425 ~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
+.|.+.+. ||+......+|+.++..+
T Consensus 158 ~~I~~~L~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 158 ENIRQAFVELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 77777666 888888888887776643
No 341
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=40.77 E-value=36 Score=31.43 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=43.2
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
.+++.++-+-+. ..+..++.+++++.. . ..+++.++++.. |+++..+- ...-.-.+.+|+..|+
T Consensus 28 ~~~~~l~av~d~------~~~~~~~~a~~~~~~-~-----~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGk 93 (359)
T 3m2t_A 28 MQDIRIVAACDS------DLERARRVHRFISDI-P-----VLDNVPAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSKGV 93 (359)
T ss_dssp CTTEEEEEEECS------SHHHHGGGGGTSCSC-C-----EESSHHHHHHHSCCSEEEECSC--HHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEEcC------CHHHHHHHHHhcCCC-c-----ccCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCC
Confidence 478888744443 234445555554321 1 126788888865 88888775 4444455788999999
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
+|+
T Consensus 94 hVl 96 (359)
T 3m2t_A 94 NVF 96 (359)
T ss_dssp EEE
T ss_pred eEE
Confidence 999
No 342
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=40.71 E-value=39 Score=30.55 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=26.4
Q ss_pred cCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 70 ~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..++.|+|++.. |....=..+++.|.++|++|.++...
T Consensus 16 ~~~~~~~vlVTG------asG~iG~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 16 PRGSHMRILITG------GAGCLGSNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp STTTCCEEEEET------TTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred ccCCCCEEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 345567776543 32345567888999999999998854
No 343
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=40.48 E-value=16 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=27.0
Q ss_pred CCccEEEEEeccCCCC-chh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLS-GGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~g-G~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|++|||+++....+.- ... .....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEc
Confidence 5678999998432210 000 23467889999999999988744
No 344
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=40.41 E-value=41 Score=29.30 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=31.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
++|+.+||+....-.|-.....-|++.|+++|++|..+=
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 446777888766556666778899999999999999875
No 345
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=40.36 E-value=63 Score=25.83 Aligned_cols=84 Identities=13% Similarity=-0.073 Sum_probs=40.4
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHH-hCC--cEEEEEecCCCCC--hhhHHhhhhhhhhhcCcEEEeccchhhHH
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVG--TKVNWITIQKPSE--EDEVIYSLEHKMWDRGVQVISAKGQETIN 146 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~-~~G--~~V~v~~~~~~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 146 (477)
|+|++|||||.... .-+..+..+.+.+. +.| .++.+.+...... -..........+...|+.+ .... +.+.
T Consensus 2 ~~m~~vLFVC~gN~--cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~a-r~l~ 77 (161)
T 3jvi_A 2 PGSMKLLFVCLGNI--CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQV-DSIS-RPVV 77 (161)
T ss_dssp --CEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCC-CCBC-CBCC
T ss_pred CCCcEEEEECCCch--hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCC-CCee-eECC
Confidence 46789999996432 22244555555554 444 3466666322110 0001112233455667776 3222 2111
Q ss_pred --HhcCCcEEEEcCc
Q 011779 147 --TALKADLIVLNTA 159 (477)
Q Consensus 147 --~~~~~DiV~~~~~ 159 (477)
....+|+|++-+.
T Consensus 78 ~~~~~~~DlIl~Md~ 92 (161)
T 3jvi_A 78 SSDFKNFDYIFAMDN 92 (161)
T ss_dssp HHHHHHCSEEEESSH
T ss_pred HHHhcCCCEEEEeCh
Confidence 2246899998754
No 346
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=40.32 E-value=42 Score=29.44 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCccEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 71 FMKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|+.||..||+..... =|-...+..+...|+.+|+.|+++-.+
T Consensus 19 ~~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~D 62 (295)
T 2vo1_A 19 YFQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKID 62 (295)
T ss_dssp --CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecc
Confidence 5778888898876433 244477889999999999999998744
No 347
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=40.27 E-value=88 Score=28.82 Aligned_cols=79 Identities=5% Similarity=0.007 Sum_probs=47.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... ..+.+..++..++..|.+|.++++..-..+..............|..+......... ....|
T Consensus 175 ~gl~va~vGD~-----~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 247 (359)
T 2w37_A 175 QGLTLTFMGDG-----RNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEG--LKGSN 247 (359)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCeEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hcCCC
Confidence 34688887652 248899999999999999999996543333222111222223445444333333322 34789
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 248 vvytd~ 253 (359)
T 2w37_A 248 VVYTDV 253 (359)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 988854
No 348
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=40.22 E-value=36 Score=29.69 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
++++.++..-+--|-.....+|+..|+++|++|.++-.+..
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44555553332234447788999999999999999875543
No 349
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=40.01 E-value=44 Score=28.53 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=29.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
+|+.++|+...+-.|=......|++.|+++|++|..+=
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 35667777666555666778899999999999998874
No 350
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=39.98 E-value=58 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=21.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|||+++.... .=..++..|.+.|++|+++...
T Consensus 2 ~mkI~IiGaGa-------iG~~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGAGA-------LGLYYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEECCST-------THHHHHHHHHHTSCCEEEECST
T ss_pred CCEEEEECcCH-------HHHHHHHHHHHCCCeEEEEEcC
Confidence 47888885321 2234577788889999998754
No 351
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=39.87 E-value=1.6e+02 Score=28.81 Aligned_cols=87 Identities=15% Similarity=0.228 Sum_probs=51.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+.++|.|+. .|| .-+..+|+.|.++|++|.+.-..... .....+...|+++..-.....+ ...+|
T Consensus 18 ~~~~i~~iG----iGg--~Gms~lA~~l~~~G~~V~~sD~~~~~-------~~~~~L~~~gi~~~~G~~~~~~--~~~~d 82 (524)
T 3hn7_A 18 QGMHIHILG----ICG--TFMGSLALLARALGHTVTGSDANIYP-------PMSTQLEQAGVTIEEGYLIAHL--QPAPD 82 (524)
T ss_dssp -CCEEEEET----TTS--HHHHHHHHHHHHTTCEEEEEESCCCT-------THHHHHHHTTCEEEESCCGGGG--CSCCS
T ss_pred cCCEEEEEE----ecH--hhHHHHHHHHHhCCCEEEEECCCCCc-------HHHHHHHHCCCEEECCCCHHHc--CCCCC
Confidence 446676665 244 44667899999999999987644322 1234556678888643222211 13689
Q ss_pred EEEEcC--cchhhHHHHHhhhCCC
Q 011779 153 LIVLNT--AVAGKWLDAVLKEDVP 174 (477)
Q Consensus 153 iV~~~~--~~~~~~~~~~~~~~~~ 174 (477)
+|+... +.....+..+...++|
T Consensus 83 ~vV~Spgi~~~~p~l~~a~~~gi~ 106 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVIEYMLDTGLR 106 (524)
T ss_dssp EEEECTTCCTTSHHHHHHHHHTCC
T ss_pred EEEECCCcCCCCHHHHHHHHCCCc
Confidence 998875 2333444555555554
No 352
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=39.79 E-value=1.3e+02 Score=26.48 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=23.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 48 k~vlVT-----Gas~GIG~aia~~la~~G~~V~~~~r~ 80 (291)
T 3ijr_A 48 KNVLIT-----GGDSGIGRAVSIAFAKEGANIAIAYLD 80 (291)
T ss_dssp CEEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEe-----CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455555 233334567899999999999888754
No 353
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=39.75 E-value=94 Score=28.73 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=47.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCC--hhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE--EDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
..++|+++.... .+++..++..++..|.+|.++++..-.. +..............|..+........ ....
T Consensus 179 ~glkva~vGD~~-----nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~e--av~~ 251 (365)
T 4amu_A 179 KNKKIVFIGDYK-----NNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKIL--AAQD 251 (365)
T ss_dssp TTCEEEEESSTT-----SHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHH--HTTT
T ss_pred CCCEEEEECCCC-----cchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHH--HhcC
Confidence 457899887532 2578999999999999999999654322 222211122223445655543333222 2357
Q ss_pred CcEEEEc
Q 011779 151 ADLIVLN 157 (477)
Q Consensus 151 ~DiV~~~ 157 (477)
.|+|++-
T Consensus 252 aDVVytd 258 (365)
T 4amu_A 252 ADVIYTD 258 (365)
T ss_dssp CSEEEEC
T ss_pred CCEEEec
Confidence 8999985
No 354
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=39.66 E-value=34 Score=28.82 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=25.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||+|+++ ||....=..+++.|.++|++|.++...
T Consensus 4 m~~ilIt------GatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLI------GASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEE------TCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEE------cCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 4677654 344456678899999999999999854
No 355
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=39.52 E-value=1.4e+02 Score=26.76 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=44.9
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------- 141 (477)
.++||+++.+.. | .-+..|..+.... +.+|..+.++.+.. .......|++++..+.
T Consensus 104 ~~~ri~vl~Sg~---g--~nl~~ll~~~~~g~l~~~I~~Visn~~~~--------~~~A~~~gIp~~~~~~~~~~r~~~~ 170 (302)
T 3o1l_A 104 QKKRVVLMASRE---S--HCLADLLHRWHSDELDCDIACVISNHQDL--------RSMVEWHDIPYYHVPVDPKDKEPAF 170 (302)
T ss_dssp SCCEEEEEECSC---C--HHHHHHHHHHHTTCSCSEEEEEEESSSTT--------HHHHHTTTCCEEECCCCSSCCHHHH
T ss_pred CCcEEEEEEeCC---c--hhHHHHHHHHHCCCCCcEEEEEEECcHHH--------HHHHHHcCCCEEEcCCCcCCHHHHH
Confidence 457888777433 2 4566777766543 46887666655432 2334567888876521
Q ss_pred --hhhHHHhcCCcEEEEcC
Q 011779 142 --QETINTALKADLIVLNT 158 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||+|++-.
T Consensus 171 ~~~~~~l~~~~~DliVlag 189 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLAR 189 (302)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEHhH
Confidence 12344668999999864
No 356
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=39.43 E-value=35 Score=29.12 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=28.7
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (477)
+++|+.++..-+--|-.....+|+..|+++ |+.|.++-.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 345555554433334457788999999998 99999998553
No 357
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=39.43 E-value=43 Score=29.30 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=24.4
Q ss_pred CccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 68 ~~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+...++.+ +++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 15 ~~~~l~~k-~~lVT-----Gas~gIG~~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 15 EVFDLRGR-VALVT-----GGSRGLGFGIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp --CCCTTC-EEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcCCCCC-EEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33334444 44555 233345567889999999999887643
No 358
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=39.04 E-value=33 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=24.6
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+++|+|++.. |....=..+++.|.+.|++|.++...
T Consensus 24 ~~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 24 EKDRKRILITG------GAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp ---CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCEEEEEc------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34567776543 33345667888899999999998854
No 359
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=38.98 E-value=60 Score=25.85 Aligned_cols=87 Identities=14% Similarity=-0.009 Sum_probs=41.6
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHH-hCCc--EEEEEecCCCCC--hhhHHhhhhhhhhhcCcEEEeccchh-h
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGT--KVNWITIQKPSE--EDEVIYSLEHKMWDRGVQVISAKGQE-T 144 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~-~~G~--~V~v~~~~~~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~-~ 144 (477)
.|++++|||||.... .-+..+..+.+.+. +.|. ++.+.+...... -..........+...|+.+ ...... .
T Consensus 2 ~~~~~~vLFVC~gN~--cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~ar~l~ 78 (157)
T 3n8i_A 2 EQATKSVLFVCLGNI--CRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM-SHVARQIT 78 (157)
T ss_dssp --CCEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCC-CCCCCBCC
T ss_pred CCCCCEEEEECCCch--hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCC-CCceeECC
Confidence 366789999996432 22244455555554 4553 356655222110 0001112234456677776 332211 1
Q ss_pred HHHhcCCcEEEEcCcc
Q 011779 145 INTALKADLIVLNTAV 160 (477)
Q Consensus 145 ~~~~~~~DiV~~~~~~ 160 (477)
-.....+|+|++-...
T Consensus 79 ~~~~~~~DlIi~M~~~ 94 (157)
T 3n8i_A 79 KEDFATFDYILCMDES 94 (157)
T ss_dssp HHHHHHCSEEEESSHH
T ss_pred HHHcCCCCEEEEeCcH
Confidence 1123469999987643
No 360
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=38.85 E-value=1e+02 Score=27.20 Aligned_cols=79 Identities=9% Similarity=0.120 Sum_probs=40.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--hhHHH-hcC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT-ALK 150 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~-~~~ 150 (477)
+|+|+++... ...=..+++.|.+.|++|.+++.................+...++.++..... ..+.. ...
T Consensus 4 ~~~ilVtGat------G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGAT------GYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTT------STTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCC------cHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 4567665432 23345677888889999998886543210000001111223456777644322 22222 236
Q ss_pred CcEEEEcC
Q 011779 151 ADLIVLNT 158 (477)
Q Consensus 151 ~DiV~~~~ 158 (477)
+|+|+...
T Consensus 78 ~d~vi~~a 85 (308)
T 1qyc_A 78 VDVVISTV 85 (308)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 89887654
No 361
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=38.84 E-value=33 Score=28.60 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=27.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
++.+||++..... .| .....++++.|.+.|++|+++...
T Consensus 6 l~~k~IllgvTGs--~a-a~k~~~l~~~L~~~g~~V~vv~T~ 44 (194)
T 1p3y_1 6 LKDKKLLIGICGS--IS-SVGISSYLLYFKSFFKEIRVVMTK 44 (194)
T ss_dssp GGGCEEEEEECSC--GG-GGGTHHHHHHHTTTSSEEEEEECH
T ss_pred cCCCEEEEEEECH--HH-HHHHHHHHHHHHHCCCEEEEEEch
Confidence 3456777665322 12 245789999999999999998854
No 362
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.80 E-value=1.9e+02 Score=24.95 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=26.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+..+|.++.+.....-....+..+.+++.+.|+++.++...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 47 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTE 47 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45679898876432112244556667778899999887643
No 363
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=38.71 E-value=48 Score=27.09 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhC------CcEEEEEe
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGV------GTKVNWIT 111 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~------G~~V~v~~ 111 (477)
|||+++..+...+|.. ..+..+++.+.+. |++|.++.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 5888888776554544 5666778888876 79999886
No 364
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=38.66 E-value=82 Score=28.93 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=45.2
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
.++++++-+-+. ..+..++.++++++... ..+++.++++. .|+++..+- ...-.-.+.+|+..|+
T Consensus 46 ~~~~~lvav~d~------~~~~~~~~a~~~g~~~~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk 112 (357)
T 3ec7_A 46 VSGVEVVAVCDI------VAGRAQAALDKYAIEAK-----DYNDYHDLINDKDVEVVIITAS--NEAHADVAVAALNANK 112 (357)
T ss_dssp CTTEEEEEEECS------STTHHHHHHHHHTCCCE-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCCcEEEEEEeC------CHHHHHHHHHHhCCCCe-----eeCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCC
Confidence 377888755543 23445666777764211 12677888874 899998876 4444456788999999
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
+|+
T Consensus 113 ~Vl 115 (357)
T 3ec7_A 113 YVF 115 (357)
T ss_dssp EEE
T ss_pred CEE
Confidence 999
No 365
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=38.65 E-value=76 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.109 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
.|+++|+ ||..-.=..+++.|.++|++|.++..
T Consensus 9 ~k~vlIT-----Gas~giG~~~a~~l~~~G~~V~~~~r 41 (253)
T 3qiv_A 9 NKVGIVT-----GSGGGIGQAYAEALAREGAAVVVADI 41 (253)
T ss_dssp TCEEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEcC
Confidence 3455565 33334556889999999999888764
No 366
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=38.63 E-value=35 Score=28.69 Aligned_cols=69 Identities=14% Similarity=-0.025 Sum_probs=40.1
Q ss_pred CCccEEEEEecc-CCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhc
Q 011779 72 MKSKLVLLVSHE-LSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (477)
Q Consensus 72 ~~~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 149 (477)
|+|+||+++... +.. .-+...+..|.+. |++|.+++...+ . ....|+.+.+-...... ..
T Consensus 1 M~m~kV~ill~~g~~~----~E~~~~~~~l~~~~~~~v~~vs~~~~-V-----------~~~~G~~v~~d~~l~~~--~~ 62 (206)
T 3f5d_A 1 MSLKKALFLILDQYAD----WEGVYLASALNQREDWSVHTVSLDPI-V-----------SSIGGFKTSVDYIIGLE--PA 62 (206)
T ss_dssp --CEEEEEECCSSBCT----TTSHHHHHHHHTSTTEEEEEEESSSE-E-----------EBTTSCEEECSEETTSS--CS
T ss_pred CCccEEEEEEcCCCcH----HHHHHHHHHHhccCCeEEEEEECCCC-E-----------EecCCcEEecCcChhhC--Cc
Confidence 567788888743 221 2244566677777 999999986543 1 11346666544333332 24
Q ss_pred CCcEEEEcC
Q 011779 150 KADLIVLNT 158 (477)
Q Consensus 150 ~~DiV~~~~ 158 (477)
.+|+|++-.
T Consensus 63 ~~D~livpG 71 (206)
T 3f5d_A 63 NFNLLVMIG 71 (206)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEEcC
Confidence 689998854
No 367
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=38.63 E-value=94 Score=28.15 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=46.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++... .+.+..++..+...|.+|+++++..-..+..............|..+......... ....|
T Consensus 154 ~gl~va~vGD~------~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~ea--v~~aD 225 (321)
T 1oth_A 154 KGLTLSWIGDG------NNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEA--AHGGN 225 (321)
T ss_dssp TTCEEEEESCS------SHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCcEEEEECCc------hhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hccCC
Confidence 35688887652 37899999999999999999997654333322221222222345444333333322 24688
Q ss_pred EEEEc
Q 011779 153 LIVLN 157 (477)
Q Consensus 153 iV~~~ 157 (477)
+|+.-
T Consensus 226 vvy~d 230 (321)
T 1oth_A 226 VLITD 230 (321)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88884
No 368
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=38.63 E-value=42 Score=30.64 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=27.9
Q ss_pred CccCCC-ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 68 PLSFMK-SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 68 ~~~~~~-~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+...|. +++++++......+| .....+...|.+.|+++.+....
T Consensus 22 ~~~~m~~~~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 22 YIQGMAEFPASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp --------CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECC
T ss_pred hhhhhhhcceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEec
Confidence 333443 457888876554444 56678899999999999887654
No 369
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=38.48 E-value=29 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=24.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|++|||.+-+... |. ..-..+...|.++||+|.=+..
T Consensus 1 m~~MkIaigsDha---G~-~lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 1 MSGMRVYLGADHA---GY-ELKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp --CCEEEEEECHH---HH-HHHHHHHHHHHHTTCEEEECSC
T ss_pred CCCCEEEEEeCch---hH-HHHHHHHHHHHHCCCEEEEeCC
Confidence 4557887776443 33 3344588899999999987754
No 370
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=38.14 E-value=62 Score=28.00 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=24.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+|.++|+ ||..-.=..+++.|.++|++|.++....
T Consensus 7 ~k~vlVT-----Gas~gIG~~~a~~l~~~G~~v~~~~~~~ 41 (264)
T 3i4f_A 7 VRHALIT-----AGTKGLGKQVTEKLLAKGYSVTVTYHSD 41 (264)
T ss_dssp CCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCEEEEe-----CCCchhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4556666 3333455688999999999999886543
No 371
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=38.05 E-value=55 Score=28.67 Aligned_cols=37 Identities=11% Similarity=-0.100 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|++++...+.|| --.-.|+.|..+|++|.|+....
T Consensus 86 ~~vlVlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~~~~ 122 (259)
T 3d3k_A 86 PTVALLCGPHVKGA---QGISCGRHLANHDVQVILFLPNF 122 (259)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCEEEEECCBC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCeEEEEEecC
Confidence 47999887655555 34667889999999999987543
No 372
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.01 E-value=39 Score=28.02 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.2
Q ss_pred cEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||||++..+...++.. ..+..+++.+ +.|++|.++...
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 6899888765555543 4445556666 789999998844
No 373
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=38.00 E-value=1.1e+02 Score=27.77 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=47.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC--ChhhHHhhhhhhhhh--cCcEEEeccchhhHHHh
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS--EEDEVIYSLEHKMWD--RGVQVISAKGQETINTA 148 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~--~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~~~~ 148 (477)
..++|+++.... .+.+..++..+...|.+|+++++..-. .+............. .|..+......... .
T Consensus 160 ~gl~va~vGD~~-----~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~ea--v 232 (328)
T 3grf_A 160 KGIKFAYCGDSM-----NNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKG--C 232 (328)
T ss_dssp GGCCEEEESCCS-----SHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHH--H
T ss_pred CCcEEEEeCCCC-----cchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHH--h
Confidence 456899887531 278999999999999999999965433 222221111222222 46555443333322 3
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
...|+|+...
T Consensus 233 ~~aDvvytd~ 242 (328)
T 3grf_A 233 EGVDVVYTDS 242 (328)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 4789998854
No 374
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=37.99 E-value=2.1e+02 Score=26.29 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=59.5
Q ss_pred eEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE
Q 011779 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (477)
+-||. |-+ +...|...-.+ ---+++.+| +-+.+.|.++|-. ...=...++.++..+ ++.+
T Consensus 145 vPVIN-a~~-~~~HPtQaLaD----l~Ti~E~~g-~l~gl~va~vGD~-~~rva~Sl~~~~~~l------------G~~v 204 (359)
T 2w37_A 145 VPVWN-GLT-DEWHPTQMLAD----FMTVKENFG-KLQGLTLTFMGDG-RNNVANSLLVTGAIL------------GVNI 204 (359)
T ss_dssp SCEEE-EEC-SSCCHHHHHHH----HHHHHHHHS-CCTTCEEEEESCT-TSHHHHHHHHHHHHH------------TCEE
T ss_pred CCEEc-CCC-CCCCccHHHHH----HHHHHHHhC-CcCCeEEEEECCC-ccchHHHHHHHHHHc------------CCEE
Confidence 34554 444 44555433222 223455555 2356789999975 111123344444433 5789
Q ss_pred EEEecCCCc-chHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 312 VIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 312 ~ivG~g~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.++|...-. .....+.+++.+++.|. .+.+. +++.+.+..+|++....
T Consensus 205 ~~~~P~~l~p~~~~~~~~~~~a~~~G~--~v~~~---~d~~eav~~aDvvytd~ 253 (359)
T 2w37_A 205 HIVAPKALFPTEETQNIAKGFAEKSGA--KLVIT---DDLDEGLKGSNVVYTDV 253 (359)
T ss_dssp EEECCGGGSCCHHHHHHHHHHHHHHTC--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred EEECCccccCCHHHHHHHHHHHHHcCC--eEEEE---eCHHHHhcCCCEEEEcc
Confidence 999974211 11233445666667763 44443 67889999999877644
No 375
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=37.96 E-value=17 Score=29.72 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=41.0
Q ss_pred HHHHHhcCEEEEcCCCCCCcccH--HHHHHHHcCCCEEeeccccccccCCCc-eEEeecCCceeeecCCCCCHHHHHHHH
Q 011779 351 APYLAAIDVLVQNSQAWGECFGR--ITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIVVNGTTGLLHPVGKEGITPLAKNI 427 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~--~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v~~~~~G~l~~~~d~~~~~la~~i 427 (477)
.-+...||.+|.-- -++|. .+.||+..++||+ +-+.-+. ..++.+.....+...+| ++++.+.|
T Consensus 102 ~~m~~~sda~Ivlp----Gg~GTL~E~~~al~~~kpV~-------~l~~~~~~~gfi~~~~~~~i~~~~~--~~e~~~~l 168 (176)
T 2iz6_A 102 NINALSSNVLVAVG----MGPGTAAEVALALKAKKPVV-------LLGTQPEAEKFFTSLDAGLVHVAAD--VAGAIAAV 168 (176)
T ss_dssp CCCGGGCSEEEEES----CCHHHHHHHHHHHHTTCCEE-------EESCCHHHHHHHHHHCTTTEEEESS--HHHHHHHH
T ss_pred HHHHHhCCEEEEec----CCccHHHHHHHHHHhCCcEE-------EEcCcccccccCChhhcCeEEEcCC--HHHHHHHH
Confidence 34456788877532 23553 5789999999999 5554221 11222222233444445 89888888
Q ss_pred HHHHh
Q 011779 428 VKLAT 432 (477)
Q Consensus 428 ~~ll~ 432 (477)
.+.+.
T Consensus 169 ~~~~~ 173 (176)
T 2iz6_A 169 KQLLA 173 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 376
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=37.96 E-value=1e+02 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=22.9
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.++|++|.++...
T Consensus 8 k~vlVT-----Gas~GIG~aia~~l~~~G~~V~~~~r~ 40 (252)
T 3h7a_A 8 ATVAVI-----GAGDYIGAEIAKKFAAEGFTVFAGRRN 40 (252)
T ss_dssp CEEEEE-----CCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 455555 233335568899999999999887654
No 377
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=37.86 E-value=64 Score=28.11 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|...|+++|+ ||..-.=..+++.|.++|++|.++...
T Consensus 22 ~~~~k~vlIT-----Gas~gIG~~~a~~l~~~G~~v~~~~~~ 58 (269)
T 3gk3_A 22 MQAKRVAFVT-----GGMGGLGAAISRRLHDAGMAVAVSHSE 58 (269)
T ss_dssp --CCCEEEET-----TTTSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred hhcCCEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3445666666 333345568899999999999887643
No 378
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=37.62 E-value=2.1e+02 Score=25.62 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred HHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH-HHHHHHHHHHhcCCC
Q 011779 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQKKIQ 338 (477)
Q Consensus 260 ~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~-~~~~l~~~~~~~~l~ 338 (477)
+++.+|- -+.+.|.++|-. ...=...++.++.. -++.+.++|...-..++ ..+.+++.+++.|.
T Consensus 139 i~e~~g~-l~gl~va~vGD~-~~rva~Sl~~~~~~------------~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~- 203 (307)
T 2i6u_A 139 IAERKGA-LRGLRLSYFGDG-ANNMAHSLLLGGVT------------AGIHVTVAAPEGFLPDPSVRAAAERRAQDTGA- 203 (307)
T ss_dssp HHHHHSC-CTTCEEEEESCT-TSHHHHHHHHHHHH------------TTCEEEEECCTTSCCCHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCC-cCCeEEEEECCC-CcCcHHHHHHHHHH------------CCCEEEEECCccccCCHHHHHHHHHHHHHcCC-
Confidence 4445552 355788999975 11112334444443 26899999974221112 33445666667763
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+.+. +++.+.+..+|++....
T Consensus 204 -~~~~~---~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 204 -SVTVT---ADAHAAAAGADVLVTDT 225 (307)
T ss_dssp -CEEEE---SCHHHHHTTCSEEEECC
T ss_pred -eEEEE---ECHHHHhcCCCEEEecc
Confidence 34433 67889999999888644
No 379
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=37.22 E-value=24 Score=31.96 Aligned_cols=32 Identities=3% Similarity=-0.109 Sum_probs=25.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|+|+++... ....+++++.++|++|.++...
T Consensus 2 ~m~Ililg~g--------~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--------SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--------THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--------hHHHHHHHHHhCCCEEEEEECC
Confidence 5789988843 4668899999999999998754
No 380
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=37.17 E-value=42 Score=32.00 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=57.5
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCC-cEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~ 346 (477)
.+++.|+++|-=.- |...++.++. +.++++++-+-+. ..+..++.+++++.+. .+..
T Consensus 81 ~~~irigiIG~G~~--g~~~~~~~l~-----------~~~~~~lvav~d~------~~~~~~~~a~~~g~~~~~~~~--- 138 (433)
T 1h6d_A 81 DRRFGYAIVGLGKY--ALNQILPGFA-----------GCQHSRIEALVSG------NAEKAKIVAAEYGVDPRKIYD--- 138 (433)
T ss_dssp CCCEEEEEECCSHH--HHHTHHHHTT-----------TCSSEEEEEEECS------CHHHHHHHHHHTTCCGGGEEC---
T ss_pred CCceEEEEECCcHH--HHHHHHHHHh-----------hCCCcEEEEEEcC------CHHHHHHHHHHhCCCcccccc---
Confidence 34578888875111 1112334333 3367887755553 2344566777777542 1222
Q ss_pred cCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 347 TLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 347 ~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
..++.++++ ..|+++..+- .....-.+.+|+..|++|+
T Consensus 139 ~~~~~~ll~~~~vD~V~iatp--~~~h~~~~~~al~aGk~Vl 178 (433)
T 1h6d_A 139 YSNFDKIAKDPKIDAVYIILP--NSLHAEFAIRAFKAGKHVM 178 (433)
T ss_dssp SSSGGGGGGCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHhcCCCCCEEEEcCC--chhHHHHHHHHHHCCCcEE
Confidence 245666776 6899998886 4544556788999999999
No 381
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=37.13 E-value=1.8e+02 Score=26.77 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=52.5
Q ss_pred HHHHhhCC---CCCCeEEEEEeecccC--CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecC-C-CcchHHHHHHHHH
Q 011779 259 HVRESLGV---RNEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-M-NAQTKFESELRNY 331 (477)
Q Consensus 259 ~~r~~~~~---~~~~~~il~vGrl~~~--Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g-~-~~~~~~~~~l~~~ 331 (477)
-+++.+|- ..-+++|.++|-+... .=...++.++..+ ++.+.+++.. . .......+.+++.
T Consensus 178 TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~------------G~~v~~~~P~~~~~~~~~~~~~~~~~ 245 (359)
T 1zq6_A 178 ALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM------------GMDVTLLCPTPDYILDERYMDWAAQN 245 (359)
T ss_dssp HHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT------------TCEEEEECSSGGGCCCHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHc------------CCEEEEEcCccccCCCHHHHHHHHHH
Confidence 45666663 2223348899986532 2234555555543 5789999864 2 1122344556666
Q ss_pred HHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 332 VMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 332 ~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
+++.|. .+.+ ..++.+.+..+|++....
T Consensus 246 a~~~g~--~v~~---~~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 246 VAESGG--SLQV---SHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHSC--EEEE---ECCHHHHHTTCSEEEEEC
T ss_pred HHHcCC--eEEE---ECCHHHHhcCCCEEEECC
Confidence 666652 3433 257888999999877654
No 382
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=37.10 E-value=45 Score=29.51 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=51.2
Q ss_pred ecccCC-CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc--hHHHHHHHHHHHh-cCCCCcEE-EccccCCHHH
Q 011779 278 SVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ--TKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAP 352 (477)
Q Consensus 278 rl~~~K-g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~--~~~~~~l~~~~~~-~~l~~~v~-~~g~~~~l~~ 352 (477)
-++|.| ..+.+.+.++.+.+ .....+++| ...-. .....++.+.+++ ..++ -|. |.+...+...
T Consensus 44 liDPdK~~~~~~~~~~~~~~~---------sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lP-vil~fPP~~g~~~~ 112 (286)
T 3vk5_A 44 IIDPFKVPVTEAVEKAAELTR---------LGFAAVLLA-STDYESFESHMEPYVAAVKAATPLP-VVLHFPPRPGAGFP 112 (286)
T ss_dssp EECTTTSCHHHHHHHHHHHHH---------TTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSC-EEEECCCBTTTBSC
T ss_pred EECCCCCCcHHHHHHHHHHHh---------cCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCC-EEEECCCCCCCccc
Confidence 568888 45666666666654 345567888 32222 2334555555666 6775 444 7733333344
Q ss_pred HHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 353 YLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
+...+|.+++||.- .-.-+.=++.+
T Consensus 113 i~~~aDa~l~psvl-Ns~n~~~i~g~ 137 (286)
T 3vk5_A 113 VVRGADALLLPALL-GSGDDYFVWKS 137 (286)
T ss_dssp CCTTCSEEEEEEET-TBSSHHHHTHH
T ss_pred cccCCCEEEEEEEe-cCCCcccccCc
Confidence 56789999999873 33333334445
No 383
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=36.99 E-value=59 Score=29.30 Aligned_cols=37 Identities=11% Similarity=-0.100 Sum_probs=27.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|++++...+.|| --.-.|+.|...|++|.|+....
T Consensus 133 ~~vlVlcG~GNNGG---DGlv~AR~L~~~G~~V~V~~~~~ 169 (306)
T 3d3j_A 133 PTVALLCGPHVKGA---QGISCGRHLANHDVQVILFLPNF 169 (306)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCEEEEECCCC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCcEEEEEecC
Confidence 47998887555555 34667889999999999987553
No 384
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=36.58 E-value=45 Score=27.91 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=17.9
Q ss_pred hHHHHHHHHHH-hCCcEEEEEecC
Q 011779 91 LLLMELAFLLR-GVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~-~~G~~V~v~~~~ 113 (477)
..=..+++.|. +.|++|.++...
T Consensus 16 ~iG~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 16 QIAQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HHHHHHHHHHHhcCCceEEEEecC
Confidence 44567788888 899999998754
No 385
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=36.56 E-value=2.1e+02 Score=25.48 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=73.9
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccccCCH
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTV 350 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~l 350 (477)
++.+..=.+.|.++.|++.++ ..|. +.+-..|.|. ...-..+.+.+..|+. ..|.|.|..+-+
T Consensus 105 ~lvv~~~s~~~sl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~ 169 (301)
T 2qpq_A 105 VFVVPAGSKYKTLGELMAAAK-----------QTNTQVTYGSCGNGT----PQHLAGELLNVSAKTHMVHVPYKGCGPAL 169 (301)
T ss_dssp EEEEETTCSCCSHHHHHHHTC-----------SSSCCCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCceEEecCCCCc----HHHHHHHHHHHHhCCCeEEeccCChHHHH
Confidence 344554466788888877654 2342 4444444332 1222223344455653 234555544445
Q ss_pred HHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCC-EEee--cccc-ccccCC-----CceEEeecCCceeeecCCCC--
Q 011779 351 APYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLLQ--KCLY-QGTAAG-----GTTEIVVNGTTGLLHPVGKE-- 418 (477)
Q Consensus 351 ~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~~--~~~~-~~~~~g-----g~~e~v~~~~~G~l~~~~d~-- 418 (477)
..++. ..|+.+.... .+.+.+..|.- ++.. +... ...+++ |.+++....-.|++++.+-+
T Consensus 170 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~ 241 (301)
T 2qpq_A 170 NDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMA 241 (301)
T ss_dssp HHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHH
T ss_pred HHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHH
Confidence 55554 3777765431 35566666753 2211 0000 001111 12111111236788887741
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGY 445 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~ 445 (477)
-++.|.+++.+++++++.++.+.+.+.
T Consensus 242 vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 242 VRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 134566777777789998887766543
No 386
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=36.51 E-value=30 Score=25.42 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
||+++|+++.... .....+...|.+.|++|..+.
T Consensus 3 mm~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 36 (127)
T 2gkg_A 3 HMSKKILIVESDT------ALSATLRSALEGRGFTVDETT 36 (127)
T ss_dssp ---CEEEEECSCH------HHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEEeCCH------HHHHHHHHHHHhcCceEEEec
Confidence 5557899887543 456677777888899987543
No 387
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=36.44 E-value=1.8e+02 Score=25.76 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=44.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------- 141 (477)
+++||+++.+.. | .-+..|..+.... ..+|..+.++++.. .......|++++..+.
T Consensus 89 ~~~ri~vl~Sg~---g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~--------~~~A~~~gIp~~~~~~~~~~r~~~~ 155 (286)
T 3n0v_A 89 HRPKVVIMVSKA---D--HCLNDLLYRQRIGQLGMDVVAVVSNHPDL--------EPLAHWHKIPYYHFALDPKDKPGQE 155 (286)
T ss_dssp CCCEEEEEESSC---C--HHHHHHHHHHHTTSSCCEEEEEEESSSTT--------HHHHHHTTCCEEECCCBTTBHHHHH
T ss_pred CCcEEEEEEeCC---C--CCHHHHHHHHHCCCCCcEEEEEEeCcHHH--------HHHHHHcCCCEEEeCCCcCCHHHHH
Confidence 457888777433 2 4566777766542 46877666655432 2234567888875431
Q ss_pred --hhhHHHhcCCcEEEEcC
Q 011779 142 --QETINTALKADLIVLNT 158 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (477)
.....+..++|+|++-.
T Consensus 156 ~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 156 RKVLQVIEETGAELVILAR 174 (286)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEecc
Confidence 12344567999999864
No 388
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=36.43 E-value=2.1e+02 Score=24.77 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=116.9
Q ss_pred CCccEEEEEeccC-CCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhc
Q 011779 72 MKSKLVLLVSHEL-SLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (477)
Q Consensus 72 ~~~~~Il~v~~~~-~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 149 (477)
.+.++|.++.+.. ...-.......+.+++.+. |+++.+........+..... .. . ......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~---~~-------------i-~~l~~~ 68 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFV---AT-------------S-QAVIEE 68 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHH---HH-------------H-HHHHTT
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHH---HH-------------H-HHHHhc
Confidence 3456798888775 3322235556667777788 99998876432211110000 00 0 112346
Q ss_pred CCcEEEEcCcch---hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 150 KADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 150 ~~DiV~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
++|.|++..... ...+..+...++| ++..-...... .....+..+.........+++. ..|
T Consensus 69 ~vdgiii~~~~~~~~~~~~~~~~~~~iP-----vV~~~~~~~~~----------~~~~~V~~D~~~~g~~a~~~l~-~~g 132 (304)
T 3gbv_A 69 QPDGVMFAPTVPQYTKGFTDALNELGIP-----YIYIDSQIKDA----------PPLAFFGQNSHQSGYFAARMLM-LLA 132 (304)
T ss_dssp CCSEEEECCSSGGGTHHHHHHHHHHTCC-----EEEESSCCTTS----------CCSEEEECCHHHHHHHHHHHHH-HHS
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCe-----EEEEeCCCCCC----------CceEEEecChHHHHHHHHHHHH-HHh
Confidence 899888875432 2234444444443 33322211110 1122333333333333344443 234
Q ss_pred cCCCCeEEEec---CCc-hhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 227 IKMPDTYVVHL---GNS-KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 227 ~~~~~i~vi~n---gvd-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
-...++.++.. |.. ...... .....++. -++.|++. .......+.....++...+ .++.+
T Consensus 133 ~~~~~i~~i~~~~~g~~~~~~~~~-----R~~gf~~~-l~~~g~~~-~~~~~~~~~~~~~~~~~~~----~~~l~----- 196 (304)
T 3gbv_A 133 VNDREIVIFRKIHEGVIGSNQQES-----REIGFRQY-MQEHHPAC-NILELNLHADLNIEDSRML----DDFFR----- 196 (304)
T ss_dssp TTCSEEEEEEEEBTTBCCCHHHHH-----HHHHHHHH-HHHHCTTS-EEEEEEEESSCSSCHHHHH----HHHHH-----
T ss_pred CCCCeEEEEEecccCCccchhHHH-----HHHHHHHH-HHhhCCCc-EEEEeeecCCCHHHHHHHH----HHHHH-----
Confidence 33456777752 211 111100 00111222 23345432 2333345655666665444 44333
Q ss_pred ccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC-H-HHHHHhcCE--EEEcCCCCCCcccHHHHHH
Q 011779 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT-V-APYLAAIDV--LVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~-l-~~~~~~aDv--~v~pS~~~~E~~g~~~lEA 378 (477)
++|+...+++.++ . ...+.+.+++.|+ +.|.+.|+-.. . ..++...-. .+... .+-.|...++.
T Consensus 197 --~~~~~~ai~~~~d-----~-a~g~~~al~~~g~-~di~vig~d~~~~~~~~~~~~~~~~tv~~~---~~~~g~~av~~ 264 (304)
T 3gbv_A 197 --EHPDVKHGITFNS-----K-VYIIGEYLQQRRK-SDFSLIGYDLLERNVTCLKEGTVSFLIAQQ---PELQGFNSIKT 264 (304)
T ss_dssp --HCTTCCEEEESSS-----C-THHHHHHHHHTTC-CSCEEEEESCCHHHHHHHHHTSEEEEEECC---HHHHHHHHHHH
T ss_pred --hCCCeEEEEEcCc-----c-hHHHHHHHHHcCC-CCcEEEEeCCCHHHHHHHHcCceEEEEEeC---HHHHHHHHHHH
Confidence 3466777888776 3 3345666778888 78899998533 2 455555433 33222 34556554443
Q ss_pred H
Q 011779 379 M 379 (477)
Q Consensus 379 m 379 (477)
+
T Consensus 265 l 265 (304)
T 3gbv_A 265 L 265 (304)
T ss_dssp H
T ss_pred H
Confidence 3
No 389
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=36.28 E-value=51 Score=28.49 Aligned_cols=43 Identities=7% Similarity=-0.005 Sum_probs=28.8
Q ss_pred CccEEEEEeccCC-CCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 73 KSKLVLLVSHELS-LSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 73 ~~~~Il~v~~~~~-~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|++||+++..... ..|.+ .-+..-...|.+.|++|.+++...+
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g 66 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKN 66 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSB
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 4578998875321 13544 3355667888999999999997654
No 390
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=36.28 E-value=45 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=29.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.++++.++..-+--|-.....+||..|++.|..|.++-.+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3566666654433455578899999999999999998754
No 391
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=36.27 E-value=2.2e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
..++|+++... .+.+..++..+...|.+|.++++..-
T Consensus 187 ~glkva~vGD~------~nva~Sl~~~l~~lG~~v~~~~P~~~ 223 (353)
T 3sds_A 187 EGLKIAWVGDA------NNVLFDLAIAATKMGVNVAVATPRGY 223 (353)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred CCCEEEEECCC------chHHHHHHHHHHHcCCEEEEECCccc
Confidence 56789988753 25889999999999999999997654
No 392
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=36.24 E-value=28 Score=29.90 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|||++ +. .||.. ....+|+..|+++|++|.++-.+.
T Consensus 1 mkI~v-s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AG---KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-EC---SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEE-ec---CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56777 42 45555 668899999999999999998554
No 393
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=36.04 E-value=34 Score=31.89 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=27.6
Q ss_pred CCccEEEEEeccCCCC-chh-hHHHHHHHHH-HhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLS-GGP-LLLMELAFLL-RGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~g-G~~-~~~~~l~~~L-~~~G~~V~v~~~~ 113 (477)
|++|||+++....+.- -.+ .....++++| .+.||+|..+...
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 5578999998543210 000 2367888999 9999999988744
No 394
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=35.89 E-value=45 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.+|++++..-+.|| --.-.|+.|.++|++|.|+....
T Consensus 80 ~~VlVlcG~GNNGG---DGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 80 PTVLVICGPGNNGG---DGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCEEEEECCSC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCcEEEEEeCC
Confidence 47998887655555 34667899999999999987543
No 395
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.84 E-value=1.2e+02 Score=25.80 Aligned_cols=35 Identities=14% Similarity=-0.041 Sum_probs=23.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|.++|+ ||..-.=..+++.|.++|++|.+......
T Consensus 14 k~vlIT-----Gas~giG~~ia~~l~~~G~~v~~~~~~~~ 48 (256)
T 3ezl_A 14 RIAYVT-----GGMGGIGTSICQRLHKDGFRVVAGCGPNS 48 (256)
T ss_dssp EEEEET-----TTTSHHHHHHHHHHHHTTEEEEEEECTTC
T ss_pred CEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 444555 33334556889999999999988874433
No 396
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=35.74 E-value=2e+02 Score=24.33 Aligned_cols=138 Identities=8% Similarity=0.038 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
......+..|.+ .+..+.++... ...++++++++. .+.+.... --...+..+|+++..+.
T Consensus 41 ~va~~ka~~Ll~---------~GA~VtVvap~------~~~~l~~l~~~~----~i~~i~~~-~~~~dL~~adLVIaAT~ 100 (223)
T 3dfz_A 41 TIATRRIKGFLQ---------EGAAITVVAPT------VSAEINEWEAKG----QLRVKRKK-VGEEDLLNVFFIVVATN 100 (223)
T ss_dssp HHHHHHHHHHGG---------GCCCEEEECSS------CCHHHHHHHHTT----SCEEECSC-CCGGGSSSCSEEEECCC
T ss_pred HHHHHHHHHHHH---------CCCEEEEECCC------CCHHHHHHHHcC----CcEEEECC-CCHhHhCCCCEEEECCC
Confidence 555555555543 35666776653 234466666543 34444321 11234667998887665
Q ss_pred CCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-----eEEeecCCceeeecCCCCCHHHHHHHHHHHHh---C--HH
Q 011779 366 AWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT---H--VE 435 (477)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~---~--~~ 435 (477)
.+..-..+.++...|+||- ..+.+.. +-++..+..-+.+..+-. .-.++..|.+-++ . -.
T Consensus 101 --d~~~N~~I~~~ak~gi~VN-------vvD~p~~~~f~~Paiv~rg~l~iaIST~G~-sP~la~~iR~~ie~~lp~~~~ 170 (223)
T 3dfz_A 101 --DQAVNKFVKQHIKNDQLVN-------MASSFSDGNIQIPAQFSRGRLSLAISTDGA-SPLLTKRIKEDLSSNYDESYT 170 (223)
T ss_dssp --CTHHHHHHHHHSCTTCEEE-------C-----CCSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHSCTHHH
T ss_pred --CHHHHHHHHHHHhCCCEEE-------EeCCcccCeEEEeeEEEeCCEEEEEECCCC-CcHHHHHHHHHHHHHccHHHH
Confidence 3444444555445899998 5555443 345555555555554321 3456666665554 1 12
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 011779 436 RRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs 453 (477)
...+.....|+.+++.+.
T Consensus 171 ~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 171 QYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 233334445555655443
No 397
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=35.69 E-value=50 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+++|+ ||..-.=..+++.|.++|++|.++.....
T Consensus 23 k~vlIT-----Gas~gIG~~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 23 KNILVL-----GGSGALGAEVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp CEEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 445555 23334556889999999999988875543
No 398
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=35.41 E-value=45 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=24.4
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCC-cEEEEEecC
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQ 113 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~ 113 (477)
.|+||+|++. ||....=..+++.|.+.| ++|.++...
T Consensus 20 ~~~mk~vlVt------GatG~iG~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 20 QGHMKNVLIL------GAGGQIARHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp --CCEEEEEE------TTTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred cCcccEEEEE------eCCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence 3555565544 233345567889999999 999998854
No 399
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=35.33 E-value=77 Score=27.64 Aligned_cols=35 Identities=20% Similarity=0.045 Sum_probs=23.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.|+++|+ ||..-.=..+++.|.+.|++|.+.....
T Consensus 27 ~k~~lVT-----Gas~GIG~aia~~la~~G~~Vv~~~~~~ 61 (267)
T 3u5t_A 27 NKVAIVT-----GASRGIGAAIAARLASDGFTVVINYAGK 61 (267)
T ss_dssp CCEEEEE-----SCSSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEe-----CCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3566666 2333345678889999999998876443
No 400
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=35.31 E-value=1.1e+02 Score=27.57 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=44.2
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH-HhcCEEEEcCCCCCCcccHHHHHHHHcCCCE
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (477)
++++++.+-+. ..+..++.+++++.. . ...++.+++ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 24 ~~~~~~~v~d~------~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~gk~V 89 (325)
T 2ho3_A 24 GEYQLVAIYSR------KLETAATFASRYQNI---Q---LFDQLEVFFKSSFDLVYIASP--NSLHFAQAKAALSAGKHV 89 (325)
T ss_dssp TSEEEEEEECS------SHHHHHHHGGGSSSC---E---EESCHHHHHTSSCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC---e---EeCCHHHHhCCCCCEEEEeCC--hHHHHHHHHHHHHcCCcE
Confidence 67777644443 234455666666531 1 125677777 67899998886 444455678899999999
Q ss_pred Ee
Q 011779 386 LL 387 (477)
Q Consensus 386 I~ 387 (477)
++
T Consensus 90 ~~ 91 (325)
T 2ho3_A 90 IL 91 (325)
T ss_dssp EE
T ss_pred EE
Confidence 93
No 401
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=35.27 E-value=1.8e+02 Score=23.58 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=64.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc--CC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (477)
.+++|+.+.. .....+.......|. .+. ......+....+. ..|++++-..- .+.-|+.+++.+.. ..
T Consensus 14 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~~~~~dlvi~D~~~-p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 14 RRVLIAEDEA----LIRMDLAEMLREEGY--EIVGEAGDGQEAVELAELHKPDLVIMDVKM-PRRDGIDAASEIASKRIA 86 (205)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEECCH----HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCChHHHHHHHHhcCCC
Confidence 4677777652 355666666666554 233 2222233333332 36887765431 34456667666643 34
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
|+|. .+.... ..+.+..|..+++..|-+ .+++...|..++...
T Consensus 87 pii~------lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVV------LTAFSQRDLVERARDAGAMAYLVKPFS--ISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEE------EEEGGGHHHHHTTGGGSCEEEEEESCC--HHHHHHHHHHHHHHH
T ss_pred CEEE------EecCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 7773 222222 123445677889999888 999999999887643
No 402
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=35.22 E-value=73 Score=28.73 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=51.6
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHc-CCCEEeeccccccccCCCceEE--eec-------C--------Cceee
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLLQKCLYQGTAAGGTTEI--VVN-------G--------TTGLL 412 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~~~~~~~~~~~gg~~e~--v~~-------~--------~~G~l 412 (477)
...++.||++|..... .|+|--.+++++.. ++++| .... |+.-+ -.+ + .--+.
T Consensus 65 ~~~l~~ADlvv~~G~~-lE~w~~k~~~~~~~~~~~~v-------~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvW 135 (312)
T 2o1e_A 65 IANIQDADLFVYNSEY-METWVPSAEKSMGQGHAVFV-------NASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVW 135 (312)
T ss_dssp HHHHHHSSEEEESCTT-TSTTHHHHHHTTCSSSCEEE-------ETTT-TCCCCCC----------------CCCCCGGG
T ss_pred HHHHhcCCEEEEcCCC-hHhHHHHHHHhcccCCCeEE-------EecC-CcccccCcccccccccccccccCCCCCCCcc
Confidence 3457899999988764 78877778887653 35555 2221 11100 000 0 01133
Q ss_pred ecCCCCCHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
.+|.+ ...+++.|...+. ||+......+|+.++..+
T Consensus 136 ldp~n--~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 136 LSPVL--AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp GSHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 33333 5667777776665 888878887777776643
No 403
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=35.15 E-value=2.5e+02 Score=25.18 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=77.3
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccccCCH
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTV 350 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~l 350 (477)
++.+..=.+.|.++.|++.++ ..|. +.+-..|.|. ...-..+.+.+..|+. ..|-|.|..+-+
T Consensus 118 ~lvv~~ds~~~tl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~ 182 (314)
T 2dvz_A 118 VVAVNPKFPAKDFKGFLEELK-----------KNPGKYSYGSSGTCG----VLHLMGESFKMATGTDIVHVPYKGSGPAV 182 (314)
T ss_dssp EEEECTTSSCSSHHHHHHHHH-----------TSTTTCEEEESCTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCcEEEeCCCCCc----HHHHHHHHHHHHhCCCeEEcccCCHHHHH
Confidence 344555567888888887765 2343 5554544442 1222233344555663 234555544555
Q ss_pred HHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCC-EEeec--ccc-ccccCC-----CceEEeecCCceeeecCCCC--
Q 011779 351 APYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLLQK--CLY-QGTAAG-----GTTEIVVNGTTGLLHPVGKE-- 418 (477)
Q Consensus 351 ~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~~~--~~~-~~~~~g-----g~~e~v~~~~~G~l~~~~d~-- 418 (477)
..++. ..|+.+.... .+.+....|.- +|+.. ... ...+++ |.+++....-.|++++.+-+
T Consensus 183 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~ 254 (314)
T 2dvz_A 183 ADAVGGQIELIFDNLP--------SSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMD 254 (314)
T ss_dssp HHHHHTSSSEEEEEHH--------HHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHH
T ss_pred HHHHcCCceEEEEcHH--------HHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHH
Confidence 55654 4788775432 35566667753 23110 000 001111 22222112236788888741
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGY 445 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~ 445 (477)
-++.|.+++.+++++++.++.+.+.+.
T Consensus 255 vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 255 VVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 134566666777779998887766543
No 404
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=35.10 E-value=42 Score=25.45 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|++++|+++.... .....+...|.+.|++|..+.
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~l~~~g~~v~~~~ 34 (143)
T 3jte_A 1 MSLAKILVIDDES------TILQNIKFLLEIDGNEVLTAS 34 (143)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEEcCCH------HHHHHHHHHHHhCCceEEEeC
Confidence 5678899988543 456677888888999887554
No 405
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=35.03 E-value=60 Score=27.00 Aligned_cols=37 Identities=22% Similarity=0.044 Sum_probs=25.6
Q ss_pred CCccEEEEEeccCCC-C----chhhHHHHHHHHHHhCCcEEE
Q 011779 72 MKSKLVLLVSHELSL-S----GGPLLLMELAFLLRGVGTKVN 108 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~-g----G~~~~~~~l~~~L~~~G~~V~ 108 (477)
|++++|++++..-.. . -....+.+|++.|+++|+.|.
T Consensus 21 ~~m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vV 62 (195)
T 1rcu_A 21 GHMKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVF 62 (195)
T ss_dssp --CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEE
Confidence 455689999965322 1 334789999999999997643
No 406
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.01 E-value=41 Score=25.32 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
|++++|+++.... .....+...|.+.|++|..+.
T Consensus 1 m~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (140)
T 2qr3_A 1 MSLGTIIIVDDNK------GVLTAVQLLLKNHFSKVITLS 34 (140)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHTTTSSEEEEEC
T ss_pred CCCceEEEEeCCH------HHHHHHHHHHHhCCcEEEEeC
Confidence 5678899888553 456677888888899887543
No 407
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=34.98 E-value=1.2e+02 Score=26.23 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=53.6
Q ss_pred EEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCC-cchHHHHHHHHHHHhcCCCCcEEEccc----
Q 011779 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELRNYVMQKKIQDRVHFVNK---- 346 (477)
Q Consensus 272 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~l~~~~~~~~l~~~v~~~g~---- 346 (477)
.|+|+|-+.-.-|...+...+.++++ ++ | ++++-.+.. ....+.+..-+...++|. .+.-+|.
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~-------~~-d--~vi~ngen~~~G~g~~~~~~~~l~~~G~--D~~T~GNHefD 69 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRD-------RY-D--LVIANGENAARGKGLDRRSYRLLREAGV--DLVSLGNHAWD 69 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGG-------GC-S--EEEEECTTTTTTSSCCHHHHHHHHHHTC--CEEECCTTTTS
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHh-------hC-C--EEEEeCCCccCCCCcCHHHHHHHHhCCC--CEEEeccEeeE
Confidence 57899998888888877777777755 44 4 455544322 112244455555666776 3556674
Q ss_pred cCCHHHHHHhcCEEEEcCC
Q 011779 347 TLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~ 365 (477)
..++.+++...+ .+.|..
T Consensus 70 ~~~l~~~l~~~~-~vrpaN 87 (252)
T 2z06_A 70 HKEVYALLESEP-VVRPLN 87 (252)
T ss_dssp CTTHHHHHHHSS-EECCTT
T ss_pred CchHHHHhccCC-ceEeec
Confidence 267899999999 787876
No 408
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=34.97 E-value=1.5e+02 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=24.4
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+++|+ ||..-.=..+++.|.++|++|.+......
T Consensus 34 k~~lVT-----Gas~GIG~aia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 34 RTALVT-----GSSRGIGAAIAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp CEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 566666 33334556789999999999988875443
No 409
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=34.97 E-value=37 Score=30.39 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=23.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
++|+|+++.. | ..=..++..|.+.||+|+++..
T Consensus 2 ~~m~i~iiG~-----G--~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGA-----G--AMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp --CEEEEECC-----S--HHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCeEEEECc-----C--HHHHHHHHHHHhCCCcEEEEEC
Confidence 4578988752 2 3455678888899999998864
No 410
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=34.94 E-value=1.2e+02 Score=21.61 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=59.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHH--cCCCE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (477)
+++++.+.. .....+....+..|. .+.......+....+ ...|++++-..- .+.-|..+++.+. ...|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (121)
T 1zh2_A 3 NVLIVEDEQ----AIRRFLRTALEGDGM--RVFEAETLQRGLLEAATRKPDLIILDLGL-PDGDGIEFIRDLRQWSAVPV 75 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESEE-TTEEHHHHHHHHHTTCCCCE
T ss_pred EEEEEeCCH----HHHHHHHHHHhcCCC--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhCCCCcE
Confidence 456666652 355666666665543 333322222222222 236887754331 2334666777664 35677
Q ss_pred EeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 386 LLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 386 I~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|. .+..... .+.+..|..+++..|-+ .+++.+.+..++.
T Consensus 76 i~------~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 76 IV------LSARSEESDKIAALDAGADDYLSKPFG--IGELQARLRVALR 117 (121)
T ss_dssp EE------EESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EE------EECCCCHHHHHHHHhcCCCeEEeCCcC--HHHHHHHHHHHHH
Confidence 72 2222222 23345577889999888 8999998877653
No 411
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=34.90 E-value=80 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEe
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (477)
.|.+++|+++.... .....+...|.+.|++|..+.
T Consensus 34 ~m~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 68 (249)
T 3q9s_A 34 RMNEQRILVIEDDH------DIANVLRMDLTDAGYVVDHAD 68 (249)
T ss_dssp ---CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEES
T ss_pred CCCCCEEEEEECCH------HHHHHHHHHHHHCCCEEEEeC
Confidence 45667899988654 455667778888898776543
No 412
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=34.90 E-value=45 Score=26.25 Aligned_cols=37 Identities=32% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|.+|||.+-+... |. ..-..+.+.|.++||+|.=+..
T Consensus 5 m~~mkI~igsDha---G~-~lK~~i~~~L~~~G~eV~D~G~ 41 (148)
T 4em8_A 5 MVVKRVFLSSDHA---GV-ELRLFLSAYLRDLGCEVFDCGC 41 (148)
T ss_dssp CSCSEEEEEECGG---GH-HHHHHHHHHHHHTTCEEEECCC
T ss_pred ceeeEEEEEECch---hH-HHHHHHHHHHHHCCCEEEEeCC
Confidence 5568888777543 33 3455778889999999986654
No 413
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=34.67 E-value=70 Score=28.78 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=52.0
Q ss_pred HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ec-CCce-----eeecCCCCCHHHH
Q 011779 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VN-GTTG-----LLHPVGKEGITPL 423 (477)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~-~~~G-----~l~~~~d~~~~~l 423 (477)
...++.||++|..... .|+|=-.++++.. +.++| .... |+..+- .+ ...| +..+|.+ ...+
T Consensus 75 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v-------~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n--~~~~ 142 (307)
T 3ujp_A 75 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSV-------VLTE-GIEPIPIADGPYTDKPNPHAWMSPRN--ALVY 142 (307)
T ss_dssp HHHHHHCSEEEECCTT-SSTTHHHHHHTSC-SCCEE-------ETTT-TCCCCBCCSSSSTTSBCCCCTTCHHH--HHHH
T ss_pred HHHHhcCCEEEEcCCC-hHHHHHHHHHhCC-CCCEE-------EeeC-CccccccccccCCCCCCCCcCCCHHH--HHHH
Confidence 3457889999988764 7887667777653 45666 3222 221111 00 0011 3334434 5667
Q ss_pred HHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 424 a~~i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
++.|.+.+. ||+......+|+.++..+
T Consensus 143 a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 143 VENIRQAFVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 777777665 888888887887776643
No 414
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=34.67 E-value=60 Score=23.56 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=61.2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHH---HcCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAm---a~G~P 384 (477)
+++++.+.. .....+....+..|. .+.......+....+. ..|++++-... .+.-|..+++.+ ..+.|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1dc7_A 5 IVWVVDDDS----SIRWVLERALAGAGL--TCTTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQIKQRHPMLP 77 (124)
T ss_dssp CCEEECSSS----SHHHHHHHHHTTTTC--CCEECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHHHHHHCTTSC
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHHHHhhCCCCC
Confidence 456777653 356667777766554 2444433344444443 35777765431 222233344444 34678
Q ss_pred EEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 385 VLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 385 vI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+|. .+... ...+.+..|..+++..|-+ .+++...+..++.
T Consensus 78 ii~------~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 78 VII------MTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERAIS 120 (124)
T ss_dssp CCC------BCCSTTSTTTTSSCTTCCCCCBCSSCC--HHHHHHHHHHHHH
T ss_pred EEE------EecCCCHHHHHHHHhcCcceEeeCCCC--HHHHHHHHHHHHH
Confidence 772 22222 2344555677889999888 9999999987653
No 415
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=34.60 E-value=69 Score=28.81 Aligned_cols=66 Identities=9% Similarity=-0.046 Sum_probs=40.5
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCE
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (477)
.++++++-+-+.. .+..++.+++++.+ ..++...+-..+|+++..+- .....-.+.+|+..|++|
T Consensus 28 ~~~~~lvav~d~~------~~~~~~~~~~~g~~-------~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v 92 (319)
T 1tlt_A 28 ASDWTLQGAWSPT------RAKALPICESWRIP-------YADSLSSLAASCDAVFVHSS--TASHFDVVSTLLNAGVHV 92 (319)
T ss_dssp CSSEEEEEEECSS------CTTHHHHHHHHTCC-------BCSSHHHHHTTCSEEEECSC--TTHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEECCC------HHHHHHHHHHcCCC-------ccCcHHHhhcCCCEEEEeCC--chhHHHHHHHHHHcCCeE
Confidence 3778887444322 12234455566543 12344444457899998876 444445677899999999
Q ss_pred E
Q 011779 386 L 386 (477)
Q Consensus 386 I 386 (477)
+
T Consensus 93 ~ 93 (319)
T 1tlt_A 93 C 93 (319)
T ss_dssp E
T ss_pred E
Confidence 9
No 416
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.60 E-value=1.1e+02 Score=27.86 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=56.0
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
+.+.++++|-=. =|. ..+.++.+ ..+++.++-+-+. ..+..++.++++++ . ..+
T Consensus 12 ~~~rvgiiG~G~--~g~-~~~~~l~~----------~~~~~~lvav~d~------~~~~~~~~~~~~~~----~---~~~ 65 (354)
T 3q2i_A 12 RKIRFALVGCGR--IAN-NHFGALEK----------HADRAELIDVCDI------DPAALKAAVERTGA----R---GHA 65 (354)
T ss_dssp SCEEEEEECCST--THH-HHHHHHHH----------TTTTEEEEEEECS------SHHHHHHHHHHHCC----E---EES
T ss_pred CcceEEEEcCcH--HHH-HHHHHHHh----------CCCCeEEEEEEcC------CHHHHHHHHHHcCC----c---eeC
Confidence 457788887511 111 23344432 1157887755443 24556666777753 1 126
Q ss_pred CHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 349 ~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++.++++ ..|+++..+- .....-.+.+|+..|++|+
T Consensus 66 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~v~ 103 (354)
T 3q2i_A 66 SLTDMLAQTDADIVILTTP--SGLHPTQSIECSEAGFHVM 103 (354)
T ss_dssp CHHHHHHHCCCSEEEECSC--GGGHHHHHHHHHHTTCEEE
T ss_pred CHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCCEE
Confidence 7788887 6899998776 4444446788999999999
No 417
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=34.50 E-value=1.6e+02 Score=27.51 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=48.9
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc----------------------------cCCHHHHHHh
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----------------------------TLTVAPYLAA 356 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~----------------------------~~~l~~~~~~ 356 (477)
...+.+++|.|.| .-...+-+++..+|. .+|.++.. ...+.+.+..
T Consensus 185 ~l~d~kVVi~GAG-----aAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ 258 (398)
T 2a9f_A 185 SLDEVSIVVNGGG-----SAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG 258 (398)
T ss_dssp CTTSCEEEEECCS-----HHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT
T ss_pred CCCccEEEEECCC-----HHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc
Confidence 6678899999988 555556666666676 35555432 1237778888
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+|+|+-.|. .--|.--+++.|+ -.|||
T Consensus 259 ADV~IG~Sa--pgl~T~EmVk~Ma-~~pII 285 (398)
T 2a9f_A 259 ADIFIGVSA--PGVLKAEWISKMA-ARPVI 285 (398)
T ss_dssp TCSEEECCS--TTCCCHHHHHTSC-SSCEE
T ss_pred CCEEEecCC--CCCCCHHHHHhhC-CCCEE
Confidence 999998876 4445555777777 45666
No 418
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=34.45 E-value=47 Score=30.81 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=46.3
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcc-cHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeee--cCCCCCHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLH--PVGKEGITPLA 424 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~-g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~--~~~d~~~~~la 424 (477)
.+..++++....++.--.+..+.+ -=++.+|+.+|+-.| .-..+.+.+++-. ..++. +..+ +++||
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI-------~~G~~~~~~~~Pp--~SfI~~~dF~s--~~~La 291 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPI-------YWGSPSVAKDFNP--KSFVNVHDFKN--FDEAI 291 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEE-------EESCTTGGGTSCG--GGSEEGGGSSS--HHHHH
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEE-------EECCCchhhhCCC--CceEEcccCCC--HHHHH
Confidence 455566666665553221001221 125789999996444 2222233444422 33332 3334 99999
Q ss_pred HHHHHHHhCHHHHHHH
Q 011779 425 KNIVKLATHVERRLTM 440 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~ 440 (477)
+.|..|-+|++++.+.
T Consensus 292 ~yL~~L~~n~~~Y~~y 307 (371)
T 2nzw_A 292 DYIKYLHTHKNAYLDM 307 (371)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHH
Confidence 9999999999877654
No 419
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=34.38 E-value=2.3e+02 Score=24.67 Aligned_cols=212 Identities=14% Similarity=0.093 Sum_probs=104.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+...|.++.+.....-....+..+.+++.+.|+++.++......... .. .-......++|
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-------~~-------------~~~~l~~~~vd 73 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGT-------QQ-------------LSRLVSEGRVD 73 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHH-------HH-------------HHHHHHSCSSS
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH-------HH-------------HHHHHHhCCCc
Confidence 44569998876543333466777788888999999988755432111 00 01122346789
Q ss_pred EEEEcCcchhh--HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 153 LIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 153 iV~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
-|++....... .+..+.. ++ |++..-..... ....+..+.........+++.+ . ...
T Consensus 74 giI~~~~~~~~~~~~~~l~~-~i-----PvV~i~~~~~~------------~~~~V~~D~~~~g~~a~~~L~~-~--G~~ 132 (303)
T 3kke_A 74 GVLLQRREDFDDDMLAAVLE-GV-----PAVTINSRVPG------------RVGSVILDDQKGGGIATEHLIT-L--GHS 132 (303)
T ss_dssp EEEECCCTTCCHHHHHHHHT-TS-----CEEEESCCCTT------------CCCEEEECHHHHHHHHHHHHHH-T--TCC
T ss_pred EEEEecCCCCcHHHHHHHhC-CC-----CEEEECCcCCC------------CCCEEEECcHHHHHHHHHHHHH-C--CCC
Confidence 88876532221 3333333 44 34332222110 1223333333333444444433 2 345
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH-----HHHHHhhccC
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES-----LELIKEKKLE 305 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l-----~~~~~~~~~~ 305 (477)
++.++....+...... .....++. -++.|++.+...+ ..+... .+...+++.++ .+ +
T Consensus 133 ~I~~i~~~~~~~~~~~-----R~~Gf~~a-l~~~g~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~~~l~-------~ 194 (303)
T 3kke_A 133 RIAFISGTAIHDTAQR-----RKEGYLET-LASAGLRSEAAWV-VDAGWE----ADAGSAALNTLYRGANLG-------K 194 (303)
T ss_dssp SEEEEESCSSCHHHHH-----HHHHHHHH-HHHTTCCCCGGGE-EECCSS----HHHHHHHHHHHHHHHCTT-------S
T ss_pred eEEEEeCCCcCccHHH-----HHHHHHHH-HHHcCCCCCcceE-EecCCC----hHHHHHHHHHhcchhhhc-------C
Confidence 6777764333211100 00111222 2345665443223 234433 34444555555 33 3
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEccccC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKTL 348 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~ 348 (477)
.++...+++.++ .....+.+.+++.|+ ++.|.+.|+-+
T Consensus 195 ~~~~~ai~~~nd-----~~A~g~~~al~~~G~~vP~di~vig~D~ 234 (303)
T 3kke_A 195 PDGPTAVVVASV-----NAAVGALSTALRLGLRVPEDLSIVGINT 234 (303)
T ss_dssp TTSCSEEEESSH-----HHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCCcEEEECCH-----HHHHHHHHHHHHcCCCCCCceEEEEEcC
Confidence 466677777765 344455666777776 47899999853
No 420
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=34.36 E-value=75 Score=25.17 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=29.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+++..+. .|..+..+..+++.|.+.|++|.++....
T Consensus 5 ~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g~~v~~~~~~~ 43 (159)
T 3fni_A 5 TSIGVFYVSE-YGYSDRLAQAIINGITKTGVGVDVVDLGA 43 (159)
T ss_dssp CEEEEEECTT-STTHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHHCCCeEEEEECcC
Confidence 4677765433 37777889999999999999998887543
No 421
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=34.35 E-value=1.5e+02 Score=26.95 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=46.1
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcC
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ 382 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G 382 (477)
+.++++++-+-+. ..+..++.+++++++ ..+++.++++ ..|+++..+- .....-.+.+|+..|
T Consensus 26 ~~~~~~lvav~d~------~~~~~~~~~~~~g~~-------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~g 90 (354)
T 3db2_A 26 KSEKLKLVTCYSR------TEDKREKFGKRYNCA-------GDATMEALLAREDVEMVIITVP--NDKHAEVIEQCARSG 90 (354)
T ss_dssp TCSSEEEEEEECS------SHHHHHHHHHHHTCC-------CCSSHHHHHHCSSCCEEEECSC--TTSHHHHHHHHHHTT
T ss_pred hCCCcEEEEEECC------CHHHHHHHHHHcCCC-------CcCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcC
Confidence 3478888755543 245566677777653 1367888884 5899888876 444445678899999
Q ss_pred CCEE
Q 011779 383 LPVL 386 (477)
Q Consensus 383 ~PvI 386 (477)
++|+
T Consensus 91 k~vl 94 (354)
T 3db2_A 91 KHIY 94 (354)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9999
No 422
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=34.15 E-value=2.7e+02 Score=25.29 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=61.3
Q ss_pred eEEEecCCchhhhhhhhhhHHHHHHHHHHHHh-hCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
+-||. |-+ +...|...-.+ ---+++. +|-+-+.+.|.++|-. ...=...++.++..+ ++.
T Consensus 122 vPVIN-a~~-~~~HPtQ~LaD----l~Ti~e~~~g~~l~gl~ia~vGD~-~~~va~Sl~~~~~~~------------G~~ 182 (333)
T 1duv_G 122 VPVWN-GLT-NEFHPTQLLAD----LLTMQEHLPGKAFNEMTLVYAGDA-RNNMGNSMLEAAALT------------GLD 182 (333)
T ss_dssp SCEEE-SCC-SSCCHHHHHHH----HHHHHHHSTTCCGGGCEEEEESCT-TSHHHHHHHHHHHHH------------CCE
T ss_pred CCeEc-CCC-CCCCchHHHHH----HHHHHHHhcCCCCCCcEEEEECCC-ccchHHHHHHHHHHc------------CCE
Confidence 34554 555 55666543322 2344555 5522355789999975 111123344444433 578
Q ss_pred EEEEecCCCc-chHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 311 AVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 311 l~ivG~g~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
+.+++...-. .....+..++.+++.|. ++.+. +++.+.+..+|++....
T Consensus 183 v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~---~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 183 LRLVAPQACWPEAALVTECRALAQQNGG--NITLT---EDVAKGVEGADFIYTDV 232 (333)
T ss_dssp EEEECCGGGCCCHHHHHHHHHHHHHTTC--EEEEE---SCHHHHHTTCSEEEECC
T ss_pred EEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE---ECHHHHhCCCCEEEeCC
Confidence 9999974211 11233445666666652 44443 67889999999887644
No 423
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=34.15 E-value=2.9e+02 Score=26.01 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=64.7
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-----C
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 382 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~-----G 382 (477)
+++|+.+.. .....+....+..+. .|.......+....+. ..|++++=-.- ++.-|+-+++.+.. .
T Consensus 3 ~iLivdD~~----~~~~~l~~~L~~~~~--~v~~a~~~~~al~~~~~~~~dlvllD~~m-p~~~G~~~~~~l~~~~~~~~ 75 (459)
T 1w25_A 3 RILVVDDIE----ANVRLLEAKLTAEYY--EVSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRKLKDDPTTRH 75 (459)
T ss_dssp EEEEECSST----THHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHhcCcccCC
Confidence 456666643 355666666665543 3443333233333332 35877754431 34456777777753 5
Q ss_pred CCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 383 LPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 383 ~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
+|||+ .|..+.. .+.+..|..+++..|-+ .+++...|..++...
T Consensus 76 ~pii~------lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 76 IPVVL------ITALDGRGDRIQGLESGASDFLTKPID--DVMLFARVRSLTRFK 122 (459)
T ss_dssp SCEEE------EECSSCHHHHHHHHHHTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCEEE------EECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 78883 3333332 23345678899999988 999999999887543
No 424
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=34.13 E-value=1.3e+02 Score=27.99 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCHHHHHHhcCEEEEcCCCC--CC--cccHHHHHHHHcCCCEEeeccccccccCCCceE
Q 011779 348 LTVAPYLAAIDVLVQNSQAW--GE--CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~--~E--~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e 402 (477)
+++.+.++.+|+++...... .. -+.--.++.|.-|.-+|- . +.+.||..|
T Consensus 257 ~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD---v--A~d~GG~~e 310 (381)
T 3p2y_A 257 QALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD---L--AGETGGNCE 310 (381)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE---T--TGGGTCSBT
T ss_pred HHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE---E--eCCCCCccc
Confidence 35778899999998643200 11 133457777777777761 1 556777766
No 425
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=34.13 E-value=43 Score=29.93 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=25.1
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+|+|++.. |....=..+++.|.++|++|.+++..
T Consensus 2 ~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTG------GTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46776543 33355668889999999999999866
No 426
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=34.05 E-value=2.1e+02 Score=25.41 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=44.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------- 141 (477)
+++||+++.+.. | .-+..|..+.... ..+|..+.++++.. .......|++++..+.
T Consensus 94 ~~~ri~vl~Sg~---g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~--------~~~A~~~gIp~~~~~~~~~~r~~~~ 160 (292)
T 3lou_A 94 ARPKVLIMVSKL---E--HCLADLLFRWKMGELKMDIVGIVSNHPDF--------APLAAQHGLPFRHFPITADTKAQQE 160 (292)
T ss_dssp SCCEEEEEECSC---C--HHHHHHHHHHHHTSSCCEEEEEEESSSTT--------HHHHHHTTCCEEECCCCSSCHHHHH
T ss_pred CCCEEEEEEcCC---C--cCHHHHHHHHHcCCCCcEEEEEEeCcHHH--------HHHHHHcCCCEEEeCCCcCCHHHHH
Confidence 356888777433 2 4566777666543 46877666655442 2235567888875431
Q ss_pred --hhhHHHhcCCcEEEEcC
Q 011779 142 --QETINTALKADLIVLNT 158 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (477)
.....+..++|+|++-.
T Consensus 161 ~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 161 AQWLDVFETSGAELVILAR 179 (292)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 12344567999999865
No 427
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=34.03 E-value=1.7e+02 Score=25.22 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHH-HHHHHHHHhcCCCCcE---EEcccc--CCHHHHHH
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFE-SELRNYVMQKKIQDRV---HFVNKT--LTVAPYLA 355 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~-~~l~~~~~~~~l~~~v---~~~g~~--~~l~~~~~ 355 (477)
.|=...|..|+.-+.. . ..+ -+++++|.. ++. ..+++.++..|-. .| +|+|-. +-....+.
T Consensus 47 ~kT~~~L~~A~~~i~~-i-----~~~-~~iLfVgtk-----~~~~~~V~~~A~~~g~~-yv~~~RWlgG~LTN~~t~~~~ 113 (241)
T 2xzm_B 47 EETWQKIKLAARVIAA-V-----QHP-EDVMVVCSR-----IYGQRAAIKFAGYTHCK-STSSSRWTPGTLTNYQTLKYE 113 (241)
T ss_dssp HHHHHHHHHHHHHHHH-C-----SSG-GGEEEECCS-----HHHHHHHHHHHHHHTCB-CCCCSSCCTTTTTCTTCTTCC
T ss_pred HHHHHHHHHHHHHHHH-H-----hCC-CeEEEEECC-----HHHHHHHHHHHHHhCCE-EeccccccCCcccCccccccC
Confidence 3444555555554433 1 112 356788876 333 3345556655532 22 355531 11123345
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
.-|++++... ..| -..+.||...|+|+|
T Consensus 114 ~PdlliV~Dp-~~e--~~ai~EA~~l~IPvI 141 (241)
T 2xzm_B 114 EPRVLIVTDP-RSD--FQAIKEASYVNIPVI 141 (241)
T ss_dssp CCSEEEESCT-TTT--HHHHHHHTTTTCCEE
T ss_pred CCCEEEEECC-Ccc--hHHHHHHHHhCCCEE
Confidence 5777776653 133 468999999999999
No 428
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=34.01 E-value=49 Score=29.89 Aligned_cols=37 Identities=24% Similarity=0.014 Sum_probs=24.3
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
|+.|+|++. ||....=..+++.|.++||+|.++....
T Consensus 1 m~~~~vlVt------GatG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 1 MSGKRALIT------GIRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp --CCEEEEE------TTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCCEEEEE------CCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 344666554 2333455678888999999999987543
No 429
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=33.92 E-value=2.9e+02 Score=25.65 Aligned_cols=102 Identities=11% Similarity=-0.009 Sum_probs=61.4
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc---------chHHHHHHHHHHHhcCCCCcEEE
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHF 343 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~v~~ 343 (477)
++++|-.+.. ..+.+++.+..+++ -.+.++..|.-.++ ..+....+.+..++.|++ +.-
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~---------aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~--~~t 211 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKA---------KGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLG--VIS 211 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCE--EEE
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHH---------cCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCE--EEE
Confidence 3456766554 78888888887765 34555655542111 113456777888888875 222
Q ss_pred ccc-cCCHHHHHHhcCEEEEcCCCCCCcccHHHHH-HHHcCCCEEeec
Q 011779 344 VNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLLQK 389 (477)
Q Consensus 344 ~g~-~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE-Ama~G~PvI~~~ 389 (477)
..+ ...+..+-..+|++=.||.. -.. ..+++ +-..|+||+.+.
T Consensus 212 e~~d~~~~~~l~~~vd~lkIgs~~-~~n--~~LL~~~a~~gkPVilk~ 256 (385)
T 3nvt_A 212 EIVTPADIEVALDYVDVIQIGARN-MQN--FELLKAAGRVDKPILLKR 256 (385)
T ss_dssp ECCSGGGHHHHTTTCSEEEECGGG-TTC--HHHHHHHHTSSSCEEEEC
T ss_pred ecCCHHHHHHHHhhCCEEEECccc-ccC--HHHHHHHHccCCcEEEec
Confidence 222 24455554559999999962 334 44554 556899999543
No 430
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=33.86 E-value=1.7e+02 Score=27.83 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=49.5
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC-C
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK-A 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~ 151 (477)
+.++|+++.- ...| . ..|+.|.++|++|++.-...... . .....+...|+++..-....... .. +
T Consensus 8 ~~k~v~viG~--G~sG--~---s~A~~l~~~G~~V~~~D~~~~~~-~----~~~~~L~~~gi~~~~g~~~~~~~--~~~~ 73 (451)
T 3lk7_A 8 ENKKVLVLGL--ARSG--E---AAARLLAKLGAIVTVNDGKPFDE-N----PTAQSLLEEGIKVVCGSHPLELL--DEDF 73 (451)
T ss_dssp TTCEEEEECC--TTTH--H---HHHHHHHHTTCEEEEEESSCGGG-C----HHHHHHHHTTCEEEESCCCGGGG--GSCE
T ss_pred CCCEEEEEee--CHHH--H---HHHHHHHhCCCEEEEEeCCcccC-C----hHHHHHHhCCCEEEECCChHHhh--cCCC
Confidence 4578888763 2223 2 24899999999999986432110 0 22345566788876432222111 24 8
Q ss_pred cEEEEcC--cchhhHHHHHhhhCCC
Q 011779 152 DLIVLNT--AVAGKWLDAVLKEDVP 174 (477)
Q Consensus 152 DiV~~~~--~~~~~~~~~~~~~~~~ 174 (477)
|+|+... +.....+..+...++|
T Consensus 74 d~vv~spgi~~~~p~~~~a~~~gi~ 98 (451)
T 3lk7_A 74 CYMIKNPGIPYNNPMVKKALEKQIP 98 (451)
T ss_dssp EEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred CEEEECCcCCCCChhHHHHHHCCCc
Confidence 9998875 2233344455555443
No 431
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=33.75 E-value=1.8e+02 Score=25.38 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhCC-cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--hhHHH-hcCCcEEEEcC
Q 011779 91 LLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT-ALKADLIVLNT 158 (477)
Q Consensus 91 ~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~-~~~~DiV~~~~ 158 (477)
..=..+++.|.++| ++|.+++....... ...+...++.++..... ..+.. ...+|+|+...
T Consensus 16 ~iG~~l~~~L~~~g~~~V~~~~R~~~~~~-------~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 16 AQGGSVARTLLEDGTFKVRVVTRNPRKKA-------AKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCTTSHH-------HHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHhcCCceEEEEEcCCCCHH-------HHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 45567788888888 99999986543211 11222346666554322 22222 24689887654
No 432
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=33.67 E-value=2.3e+02 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=22.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.++|++|.++...
T Consensus 14 k~vlVT-----Gas~gIG~~ia~~l~~~G~~V~~~~r~ 46 (278)
T 3sx2_A 14 KVAFIT-----GAARGQGRAHAVRLAADGADIIAVDLC 46 (278)
T ss_dssp CEEEEE-----STTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEE-----CCCChHHHHHHHHHHHCCCeEEEEecc
Confidence 455555 233334567889999999999888644
No 433
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=33.65 E-value=69 Score=27.46 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=24.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
..|+++|+ ||..-.=..+++.|.++|++|.++....
T Consensus 6 ~~k~vlIT-----Gas~gIG~~~a~~l~~~G~~v~~~~~~~ 41 (255)
T 3icc_A 6 KGKVALVT-----GASRGIGRAIAKRLANDGALVAIHYGNR 41 (255)
T ss_dssp TTCEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEE-----CCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 34555665 3333455688999999999998876543
No 434
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=33.51 E-value=3.5e+02 Score=26.37 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=47.3
Q ss_pred ceEEEEEecCCCc--chHHHHHHHHHHHhcCCCCcEEEccccCCHHHH--HHhcCEEEEcCCCCCCcccHHHHHHH--Hc
Q 011779 308 SVHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY--LAAIDVLVQNSQAWGECFGRITIEAM--AF 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~--~~~aDv~v~pS~~~~E~~g~~~lEAm--a~ 381 (477)
+-++.|+|.-+.. .+....+++++.+++|+.-++.+.|. ..+.++ +..|++-+..+ ...+..+.+.| -+
T Consensus 153 ~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg-~t~~ei~~~~~A~~niv~~----~~~g~~~A~~Le~r~ 227 (525)
T 3aek_B 153 EVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLG-ASPDDLRKLGQAHFNVLMY----PETGESAARHLERAC 227 (525)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETT-CCHHHHHTGGGSSEEEECC----HHHHHHHHHHHHHHS
T ss_pred CCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHhhccCCEEEEEC----hhhHHHHHHHHHHHc
Confidence 3478889864311 12356789999999999766667764 334444 34455544433 22467788888 57
Q ss_pred CCCEE
Q 011779 382 QLPVL 386 (477)
Q Consensus 382 G~PvI 386 (477)
|+|.+
T Consensus 228 GiP~i 232 (525)
T 3aek_B 228 KQPFT 232 (525)
T ss_dssp CCCBC
T ss_pred CCCce
Confidence 99999
No 435
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=33.40 E-value=42 Score=29.96 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=27.3
Q ss_pred cEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|||++++..... ++ .....+++++.++||+|.++...
T Consensus 2 m~i~il~~~~~~~~~~~--~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKK--DSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGCCTTT--CHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhCCcCC--ChHHHHHHHHHHCCCEEEEEchh
Confidence 689999865321 11 34567999999999999999754
No 436
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.38 E-value=2.5e+02 Score=24.62 Aligned_cols=218 Identities=10% Similarity=0.013 Sum_probs=106.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
+++|.++.+.....-.......+.+++.+.|+++.+.......... ... .+ .....++|.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~~-------------i~-~l~~~~vdg 61 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQ------MSQ-------------IE-NMINRGVDV 61 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHH------HHH-------------HH-HHHHTTCSE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH------HHH-------------HH-HHHHcCCCE
Confidence 4578888876543333466777888888999999988754321100 000 11 122357998
Q ss_pred EEEcCcchh---hHHHHHhhhCCCccccceeeeeeecccccchhhHhhccccc-ccceeeehhhHHHHHHHhHhhhccCC
Q 011779 154 IVLNTAVAG---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLV-AGAMIDSHVTAEYWKNRTRERLRIKM 229 (477)
Q Consensus 154 V~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (477)
|++...... ..+..+...++ |++..-..... ... ..+..+.........+++.+..| .
T Consensus 62 iIi~~~~~~~~~~~~~~~~~~~i-----PvV~~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~~G--~ 123 (313)
T 3m9w_A 62 LVIIPYNGQVLSNVVKEAKQEGI-----KVLAYDRMIND-----------ADIDFYISFDNEKVGELQAKALVDIVP--Q 123 (313)
T ss_dssp EEEECSSTTSCHHHHHHHHTTTC-----EEEEESSCCTT-----------SCCSEEEEECHHHHHHHHHHHHHHHCS--S
T ss_pred EEEeCCChhhhHHHHHHHHHCCC-----eEEEECCcCCC-----------CCceEEEecCHHHHHHHHHHHHHHhCC--C
Confidence 887653322 33444444444 34332221111 112 12333333334444444443444 2
Q ss_pred CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCc-Cc
Q 011779 230 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV-PS 308 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~-~~ 308 (477)
.++.++....+..... ......++.+++. +.. ..+.+.- ......-..+...+++.++.+ ++ |+
T Consensus 124 ~~i~~i~g~~~~~~~~-----~R~~Gf~~~l~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-------~~~~~ 188 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAK-----LFRAGQMKVLKPY-VDS-GKIKVVG-DQWVDGWLPENALKIMENALT-------ANNNK 188 (313)
T ss_dssp EEEEEEESCTTCHHHH-----HHHHHHHHHHHHH-HHT-TSEEEEE-EEECGGGCHHHHHHHHHHHHH-------HTTTC
T ss_pred CcEEEEECCCCCccHH-----HHHHHHHHHHHhh-ccC-CCEEEEe-eccCCCcCHHHHHHHHHHHHH-------hCCCC
Confidence 3566664322211100 0011112333332 211 2233321 111112244555566666655 34 56
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (477)
...+++.++ .....+.+.+++.|+.+.|.+.|+-..
T Consensus 189 ~~ai~~~~d-----~~a~g~~~al~~~G~~~di~vig~d~~ 224 (313)
T 3m9w_A 189 IDAVVASND-----ATAGGAIQALSAQGLSGKVAISGQDAD 224 (313)
T ss_dssp CCEEEESSH-----HHHHHHHHHHHTTTCTTTSEECCCSCC
T ss_pred eeEEEECCC-----chHHHHHHHHHHcCCCCCcEEEecCCC
Confidence 677777765 445566777888888777999998543
No 437
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=33.30 E-value=1.1e+02 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=22.7
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 33 k~~lVT-----Gas~GIG~aia~~la~~G~~V~~~~r~ 65 (276)
T 3r1i_A 33 KRALIT-----GASTGIGKKVALAYAEAGAQVAVAARH 65 (276)
T ss_dssp CEEEEE-----STTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEe-----CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455555 232334557889999999999888754
No 438
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=33.25 E-value=1.3e+02 Score=27.16 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=42.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
|++||.++.. |. .-..++..|.+. |+++..++...+.. ........|+. ......+....++
T Consensus 2 m~~~vgiiG~----G~---~g~~~~~~l~~~~~~~l~av~d~~~~~-------~~~~~~~~~~~---~~~~~~~l~~~~~ 64 (331)
T 4hkt_A 2 MTVRFGLLGA----GR---IGKVHAKAVSGNADARLVAVADAFPAA-------AEAIAGAYGCE---VRTIDAIEAAADI 64 (331)
T ss_dssp -CEEEEEECC----SH---HHHHHHHHHHHCTTEEEEEEECSSHHH-------HHHHHHHTTCE---ECCHHHHHHCTTC
T ss_pred CceEEEEECC----CH---HHHHHHHHHhhCCCcEEEEEECCCHHH-------HHHHHHHhCCC---cCCHHHHhcCCCC
Confidence 3578988873 22 233456666664 78887666433211 11122234555 4555666666689
Q ss_pred cEEEEcCcchhh
Q 011779 152 DLIVLNTAVAGK 163 (477)
Q Consensus 152 DiV~~~~~~~~~ 163 (477)
|+|++.++....
T Consensus 65 D~V~i~tp~~~h 76 (331)
T 4hkt_A 65 DAVVICTPTDTH 76 (331)
T ss_dssp CEEEECSCGGGH
T ss_pred CEEEEeCCchhH
Confidence 999998865443
No 439
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=33.19 E-value=61 Score=27.22 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=36.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
++|+|+++. . | ..-..++..|.+.|++|.++...... ...+...|+... ..... ..+.|
T Consensus 27 ~~~~I~iiG--~--G---~~G~~la~~l~~~g~~V~~~~r~~~~---------~~~~~~~g~~~~---~~~~~--~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG--S--G---DFARSLATRLVGSGFKVVVGSRNPKR---------TARLFPSAAQVT---FQEEA--VSSPE 85 (215)
T ss_dssp --CCEEEEC--C--S---HHHHHHHHHHHHTTCCEEEEESSHHH---------HHHHSBTTSEEE---EHHHH--TTSCS
T ss_pred CCCEEEEEc--c--C---HHHHHHHHHHHHCCCEEEEEeCCHHH---------HHHHHHcCCcee---cHHHH--HhCCC
Confidence 346788874 1 2 45566788888999999887533210 112222355443 11111 24689
Q ss_pred EEEEcCc
Q 011779 153 LIVLNTA 159 (477)
Q Consensus 153 iV~~~~~ 159 (477)
+|+...+
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9988764
No 440
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=33.04 E-value=69 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ 113 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (477)
|||++-.... .| .....++++.|.+. |++|+++.+.
T Consensus 1 ~~IllgvTGs--ia-a~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMTGA--TG-APLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CEEEEEECSS--SC-HHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred CEEEEEEeCh--HH-HHHHHHHHHHHHhccCCEEEEEECc
Confidence 4565555322 13 25688999999999 9999998854
No 441
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=32.87 E-value=2.4e+02 Score=24.44 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=23.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 12 k~~lVT-----Gas~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 12 KVAFVT-----GAARGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp CEEEEE-----STTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEe-----CCCchHHHHHHHHHHHCCCeEEEEecc
Confidence 456666 233345568899999999999888644
No 442
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=32.79 E-value=42 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.002 Sum_probs=23.1
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|++|||+++.. | ..-..++..|.+.|++|+++..
T Consensus 2 m~~mki~iiG~----G---~~G~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 2 IESKTYAVLGL----G---NGGHAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp --CCEEEEECC----S---HHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcCeEEEECC----C---HHHHHHHHHHHhCCCEEEEEeC
Confidence 55689998852 2 3344577788889999988753
No 443
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=32.75 E-value=46 Score=29.99 Aligned_cols=40 Identities=13% Similarity=-0.137 Sum_probs=28.2
Q ss_pred CccEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEec
Q 011779 73 KSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 73 ~~~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|+|||+++....+. -... .....++++|.+.||+|..+..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~ 53 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDP 53 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56789999854322 0011 3467899999999999999873
No 444
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=32.64 E-value=1.3e+02 Score=27.19 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.9
Q ss_pred cCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
.+++.++-+-+. ..+..++.+++++.. + ..+++.++++ .+|+++..+- .....-.+.+|+..|+
T Consensus 24 ~~~~~l~av~d~------~~~~~~~~~~~~~~~-~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk 89 (344)
T 3ezy_A 24 IDDAILYAISDV------REDRLREMKEKLGVE-K-----AYKDPHELIEDPNVDAVLVCSS--TNTHSELVIACAKAKK 89 (344)
T ss_dssp STTEEEEEEECS------CHHHHHHHHHHHTCS-E-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECC------CHHHHHHHHHHhCCC-c-----eeCCHHHHhcCCCCCEEEEcCC--CcchHHHHHHHHhcCC
Confidence 377888754443 234556667777642 1 1267888888 7999998876 4444456788999999
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
+|+
T Consensus 90 ~v~ 92 (344)
T 3ezy_A 90 HVF 92 (344)
T ss_dssp EEE
T ss_pred eEE
Confidence 999
No 445
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.61 E-value=1.5e+02 Score=24.56 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=65.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH--cCCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 384 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~P 384 (477)
.+++|+.+.+ .....+....+..+. .|......++....+. ..|++++-..- .+.-|+.+++.+. ..+|
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEE----SLADPLAFLLRKEGF--EATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCKQLRARSSVP 77 (230)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHHCSCS
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHHHHHcCCCCC
Confidence 4667777652 356667777766554 3443332233333332 36887765431 3444666666554 4788
Q ss_pred EEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 385 VLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 385 vI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
+|+ .+.... ..+.+..|..|++..|-+ .+++.++|..++..
T Consensus 78 ii~------lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIM------VTARDSEIDKVVGLELGADDYVTKPYS--ARELIARIRAVLRR 121 (230)
T ss_dssp EEE------EECCHHHHHHHHHHHHCCSCCCCSSCC--HHHHHHHHHHHHTT
T ss_pred EEE------EeCCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHhh
Confidence 883 222221 123345677889998888 99999999988763
No 446
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=32.58 E-value=50 Score=29.72 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|++|+++..... +.....+..+.+.|.++|++|.+...
T Consensus 4 m~ki~iI~n~~~-~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 4 HRSVLLVVHTGR-DEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp -CEEEEEESSSG-GGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCEEEEEEeCCC-HHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 468998887554 33446788999999999999887653
No 447
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=32.54 E-value=84 Score=28.02 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=41.2
Q ss_pred CCCccEEEEEeccCCCCchhhHHH-HHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHh
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLM-ELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~-~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 148 (477)
.|+++||.++.. | ..-. .++..|.+ .|+++..++...... ........|+.. ......+..
T Consensus 3 ~M~~~~igiIG~----G---~~g~~~~~~~l~~~~~~~l~av~d~~~~~-------~~~~a~~~~~~~--~~~~~~ll~- 65 (308)
T 3uuw_A 3 AMKNIKMGMIGL----G---SIAQKAYLPILTKSERFEFVGAFTPNKVK-------REKICSDYRIMP--FDSIESLAK- 65 (308)
T ss_dssp --CCCEEEEECC----S---HHHHHHTHHHHTSCSSSEEEEEECSCHHH-------HHHHHHHHTCCB--CSCHHHHHT-
T ss_pred ccccCcEEEEec----C---HHHHHHHHHHHHhCCCeEEEEEECCCHHH-------HHHHHHHcCCCC--cCCHHHHHh-
Confidence 467789999873 2 2233 25666666 467887666443221 111112234443 444555555
Q ss_pred cCCcEEEEcCcchhh
Q 011779 149 LKADLIVLNTAVAGK 163 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (477)
++|+|++.++....
T Consensus 66 -~~D~V~i~tp~~~h 79 (308)
T 3uuw_A 66 -KCDCIFLHSSTETH 79 (308)
T ss_dssp -TCSEEEECCCGGGH
T ss_pred -cCCEEEEeCCcHhH
Confidence 89999998865543
No 448
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=32.49 E-value=69 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=26.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+||+........ .-+..|+++|++.| +|.|+.+....
T Consensus 1 M~ILlTNDDGi~a---pGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (244)
T 2e6c_A 1 MRILVTNDDGIYS---PGLWALAEAASQFG-EVFVAAPDTEQ 38 (244)
T ss_dssp CEEEEECSSCTTC---HHHHHHHHHHTTTS-EEEEEEECSSC
T ss_pred CeEEEEcCCCCCc---HhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 5787766543221 44888999999988 99999965543
No 449
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=32.48 E-value=46 Score=29.38 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=27.5
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|+++--+. .+..--.+..|+..|+|+|
T Consensus 64 ~dl~~~l~~~DvVIDft~--p~~~~~~~~~a~~~G~~vV 100 (273)
T 1dih_A 64 SSLDAVKDDFDVFIDFTR--PEGTLNHLAFCRQHGKGMV 100 (273)
T ss_dssp SCSTTTTTSCSEEEECSC--HHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHhcCCCEEEEcCC--hHHHHHHHHHHHhCCCCEE
Confidence 345566778999995555 5655556778999999999
No 450
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=32.48 E-value=2.4e+02 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=26.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
+..+|.++.+.....-....+..+.+++.+.|+++.+....
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 59 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE 59 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45679988875432112244556666777899999887643
No 451
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=32.47 E-value=44 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.++|+|++.. |....=..+++.|.++||+|.++....
T Consensus 17 ~~~~~vlVtG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 17 RGSHMILVTG------SAGRVGRAVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp ----CEEEET------TTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCCEEEEEC------CCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence 4556676553 333556688899999999999988554
No 452
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=32.46 E-value=49 Score=29.14 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=22.8
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
.|.+.|+++|+ ||..-.=..+++.|.++|++|.++..
T Consensus 20 ~m~~~k~~lVT-----Gas~GIG~aia~~la~~G~~V~~~~r 56 (279)
T 3sju_A 20 HMSRPQTAFVT-----GVSSGIGLAVARTLAARGIAVYGCAR 56 (279)
T ss_dssp -----CEEEEE-----STTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred cccCCCEEEEe-----CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 35555666776 23333456788999999999887764
No 453
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=32.45 E-value=2e+02 Score=23.28 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=65.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.+ .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. .++
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 5 PTVFVVDDDM----SVREGLRNLLRSAGF--EVETFDCASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQEQLTAISDGI 77 (208)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEcCCHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 4677777652 456667777766554 3433322233333332 25777754431 4445677777664 368
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
|+|+ .+.... ..+.+..|..|++..|-+ .+++.++|..++..
T Consensus 78 ~ii~------ls~~~~~~~~~~a~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 78 PIVF------ITAHGDIPMTVRAMKAGAIEFLPKPFE--EQALLDAIEQGLQL 122 (208)
T ss_dssp CEEE------EESCTTSCCCHHHHHTTEEEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CEEE------EeCCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHHhh
Confidence 8883 232222 233345677889999888 99999999988764
No 454
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=32.31 E-value=3.8e+02 Score=26.48 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=54.5
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-----CcEEEccc------------------------c
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNK------------------------T 347 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-----~~v~~~g~------------------------~ 347 (477)
..++-.+.+..+.++++.|.|...- .-.+.+.....+.|+. .+|.+... .
T Consensus 309 nAlki~gk~l~d~riv~~GAGaAgi-gia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~~~ 387 (605)
T 1o0s_A 309 TCTRVTKKLVSQEKYLFFGAGAAST-GIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPET 387 (605)
T ss_dssp HHHHHHCCCGGGCCEEEECCSHHHH-HHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCC
T ss_pred HHHHHhCCChhhcEEEEECCCHHHH-HHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcCCC
Confidence 3333333367889999999983111 1223333333335763 56665431 0
Q ss_pred CCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc--CCCEE
Q 011779 348 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--G~PvI 386 (477)
.++.+.+.. +|+||-.|.. .-.|.--++++|+. -.|+|
T Consensus 388 ~~L~eav~~vkpdVlIG~S~~-~g~ft~evv~~Ma~~~~~PII 429 (605)
T 1o0s_A 388 TSILEVIRAARPGALIGASTV-RGAFNEEVIRAMAEINERPII 429 (605)
T ss_dssp CCHHHHHHHHCCSEEEECSSC-TTCSCHHHHHHHHHHCSSCEE
T ss_pred CCHHHHHhhcCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEE
Confidence 247888885 9999988852 45677779999994 67777
No 455
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=32.29 E-value=59 Score=24.56 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
.|+|+++. . ...-..+++.|.+.|++|.++..
T Consensus 4 ~m~i~IiG--~-----G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAG--I-----GRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEEC--C-----SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC--C-----CHHHHHHHHHHHhCCCeEEEEEC
Confidence 46787763 1 24556788899999999998864
No 456
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=32.27 E-value=1.3e+02 Score=25.28 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
+..-|+++.... ..| -..+.||...|+|+|+ ..|+-..++. .-+.+|.+|+ .-.-...+..++.
T Consensus 113 f~~PdlliV~Dp-~~e--~~ai~EA~~l~IPvIa------lvDTn~~p~~-----Vd~~IP~Ndd-s~~SI~Li~~~la 176 (208)
T 1vi6_A 113 YREPEVVFVNDP-AID--KQAVSEATAVGIPVVA------LCDSNNSSAD-----VDLVIPTNNK-GRRALAIVYWLLA 176 (208)
T ss_dssp CCCCSEEEESCT-TTT--HHHHHHHHHTTCCEEE------EECTTCCCTT-----CSEEEESCCS-CHHHHHHHHHHHH
T ss_pred hCCCCEEEEECC-Ccc--hhHHHHHHHhCCCEEE------EeCCCCCccc-----cCEEEeCCCC-chhHHHHHHHHHH
Confidence 345677776553 133 3689999999999993 2233332332 2366666664 3333344444443
No 457
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=32.26 E-value=1.5e+02 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=23.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 42 k~vlVT-----Gas~GIG~aia~~la~~G~~V~~~~r~ 74 (293)
T 3rih_A 42 RSVLVT-----GGTKGIGRGIATVFARAGANVAVAARS 74 (293)
T ss_dssp CEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEe-----CCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 566666 333345567899999999999888744
No 458
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.16 E-value=2.5e+02 Score=24.33 Aligned_cols=212 Identities=10% Similarity=0.000 Sum_probs=103.8
Q ss_pred CccEEEEEec----cCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHh
Q 011779 73 KSKLVLLVSH----ELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (477)
Q Consensus 73 ~~~~Il~v~~----~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 148 (477)
+..+|.++.+ .....-....+..+.+++.+.|+++.++......... . .......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--------~-------------~~~~l~~ 63 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQ--------S-------------LIHLVET 63 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCH--------H-------------HHHHHHH
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHH--------H-------------HHHHHHc
Confidence 3457888887 3221111245566677788899999998854321111 0 1122334
Q ss_pred cCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc
Q 011779 149 LKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 227 (477)
Q Consensus 149 ~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (477)
.++|-|++..... ...+..+...++| ++..-..... .....+..+.........+++.+.
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iP-----vV~~~~~~~~-----------~~~~~V~~D~~~~~~~a~~~L~~~--- 124 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFP-----FLALGRSHLP-----------KPYAWFDFDNHAGASLAVKRLLEL--- 124 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCC-----EEEESCCCCS-----------SCCEEEEECHHHHHHHHHHHHHHT---
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCC-----EEEECCCCCC-----------CCCCEEEcChHHHHHHHHHHHHHC---
Confidence 6789888765322 2233334444443 3332221110 122333334333444444444332
Q ss_pred CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC
Q 011779 228 KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (477)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (477)
...++.++....+...... .....+ +.-++.|++.+...+ ..+... .+...+++.++.+ +.+
T Consensus 125 G~~~I~~i~~~~~~~~~~~-----R~~Gf~-~al~~~g~~~~~~~~-~~~~~~----~~~~~~~~~~~l~-------~~~ 186 (294)
T 3qk7_A 125 GHQRIAFVSTDARISYVDQ-----RLQGYV-QTMSEAGLMPLAGYL-QKADPT----RPGGYLAASRLLA-------LEV 186 (294)
T ss_dssp TCCCEEEEEESSCCHHHHH-----HHHHHH-HHHHTTTCCCCTTCE-EEECSS----HHHHHHHHHHHHH-------SSS
T ss_pred CCceEEEEeCCcccchHHH-----HHHHHH-HHHHHCCCCCChhHe-ecCCCC----HHHHHHHHHHHHc-------CCC
Confidence 3456777754332211100 001111 222344665433333 234333 4445566666655 446
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
+...+++.++ .....+.+.+++.|+ ++.|.+.|+-
T Consensus 187 ~~~ai~~~nd-----~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 187 PPTAIITDCN-----MLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp CCSEEEESSH-----HHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred CCcEEEECCH-----HHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 6667777765 344455666777776 4788898874
No 459
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=32.11 E-value=35 Score=28.11 Aligned_cols=40 Identities=23% Similarity=0.122 Sum_probs=24.8
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.+|||+++..+...+|.. ..+..+++.+. .|++|.++-..
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~ 45 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADIS 45 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCT
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHH
Confidence 457899998776555544 33444455454 68999888643
No 460
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=32.08 E-value=1.4e+02 Score=26.99 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
|+++||.++... ..| ...++..|...|+++..++......... +...+ .+.+ .......+....++
T Consensus 2 M~~~rvgiiG~G--~~~----~~~~~~~l~~~~~~lvav~d~~~~~~~~----~a~~~--~~~~--~~~~~~~ll~~~~~ 67 (336)
T 2p2s_A 2 MKKIRFAAIGLA--HNH----IYDMCQQLIDAGAELAGVFESDSDNRAK----FTSLF--PSVP--FAASAEQLITDASI 67 (336)
T ss_dssp --CCEEEEECCS--STH----HHHHHHHHHHTTCEEEEEECSCTTSCHH----HHHHS--TTCC--BCSCHHHHHTCTTC
T ss_pred CCccEEEEECCC--hHH----HHHhhhhhcCCCcEEEEEeCCCHHHHHH----HHHhc--CCCc--ccCCHHHHhhCCCC
Confidence 677899999742 122 2234455556789987666544332111 11111 1222 23445666666689
Q ss_pred cEEEEcCcchhh
Q 011779 152 DLIVLNTAVAGK 163 (477)
Q Consensus 152 DiV~~~~~~~~~ 163 (477)
|+|++.++....
T Consensus 68 D~V~i~tp~~~h 79 (336)
T 2p2s_A 68 DLIACAVIPCDR 79 (336)
T ss_dssp CEEEECSCGGGH
T ss_pred CEEEEeCChhhH
Confidence 999998865443
No 461
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=31.98 E-value=8.7 Score=20.66 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
+++-+++|+.+ +....+++.+++.++ +|.|.|
T Consensus 4 qvrtiwvggtp----eelkklkeeakkani--rvtfwg 35 (36)
T 2ki0_A 4 QVRTIWVGGTP----EELKKLKEEAKKANI--RVTFWG 35 (36)
T ss_dssp SCCCCCBCCCH----HHHHHHHHHHHHHCC--CCCBCC
T ss_pred eeEEEEecCCH----HHHHHHHHHHHhccE--EEEeec
Confidence 35556777763 456667777777765 566655
No 462
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.89 E-value=37 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCchh--hHHHHHHHHHHhCCcEEEEEecCC
Q 011779 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++++.++. ..||.. ....+||..|+++|++|.++-.+.
T Consensus 6 ~~vI~v~s--~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 6 VRRIALAN--QKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCEEEECC--SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEEe--CCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45555543 234544 678899999999999999987553
No 463
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=31.84 E-value=49 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCcEEEEEecC
Q 011779 92 LLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 92 ~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
.=..+++.|.++|++|.++...
T Consensus 13 IG~~ia~~l~~~G~~V~~~~r~ 34 (254)
T 1zmt_A 13 GGMGSALRLSEAGHTVACHDES 34 (254)
T ss_dssp THHHHHHHHHHTTCEEEECCGG
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3456888899999998887643
No 464
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.77 E-value=2.5e+02 Score=24.14 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
..+...+++.++.+ ..|+...+++.++ .....+.+.+++.|+.+.|.+.|+-
T Consensus 173 ~~~~~~~~~~~~l~-------~~~~~~ai~~~~d-----~~a~g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 173 NYDKAYDGTVELLT-------KYPDISVMVGLNQ-----YSATGAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp CHHHHHHHHHHHHH-------HCTTEEEEEESSH-----HHHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred CHHHHHHHHHHHHH-------hCCCceEEEECCC-----cchHHHHHHHHhcCCCCCEEEEEEC
Confidence 34445555665554 3467778888765 3444556667778887668888874
No 465
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=31.73 E-value=1.2e+02 Score=26.95 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=24.4
Q ss_pred CCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 348 ~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
.++.++.. ..|+.+.-.. .+...-.+.||...|++
T Consensus 60 ~sl~el~~~~~~Dv~ii~vp--~~~~~~~v~ea~~~Gi~ 96 (294)
T 2yv1_A 60 DTVKEAVKETDANASVIFVP--APFAKDAVFEAIDAGIE 96 (294)
T ss_dssp SSHHHHHHHHCCCEEEECCC--HHHHHHHHHHHHHTTCS
T ss_pred CCHHHHhhcCCCCEEEEccC--HHHHHHHHHHHHHCCCC
Confidence 45666666 6787776665 56666667778888887
No 466
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=31.66 E-value=63 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=25.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
+|+|++.. |....=..+++.|.++||+|.+++....
T Consensus 13 ~M~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~~ 48 (342)
T 2x4g_A 13 HVKYAVLG------ATGLLGHHAARAIRAAGHDLVLIHRPSS 48 (342)
T ss_dssp CCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence 45776553 3334566788889999999999986543
No 467
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=31.64 E-value=91 Score=26.22 Aligned_cols=42 Identities=24% Similarity=0.146 Sum_probs=28.5
Q ss_pred ccEEEEEeccCC------CCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELS------LSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
++||+++..... +.|.+ .-+......|.+.|++|.+++...+
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~ 53 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG 53 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 368888886322 12333 4456677788889999999996654
No 468
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=31.42 E-value=76 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=26.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+||+........ .-+..|+++|++.| +|.|+.+....
T Consensus 1 M~ILlTNDDGi~a---pGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (247)
T 1j9j_A 1 MRILVTNDDGIQS---KGIIVLAELLSEEH-EVFVVAPDKER 38 (247)
T ss_dssp CEEEEECSSCTTC---HHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCCCCCc---HhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 5787766543221 44888999999988 99999966543
No 469
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.34 E-value=1.5e+02 Score=28.01 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh-hHH-H--hcCCcEEEEcCc
Q 011779 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-TIN-T--ALKADLIVLNTA 159 (477)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~-~--~~~~DiV~~~~~ 159 (477)
.++-..+++.|.+.|++|+++..+... .......|+.++.-.... ... . ..+.|+|++...
T Consensus 13 Gr~G~~va~~L~~~g~~vvvId~d~~~---------v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 13 GRFGQITGRLLLSSGVKMVVLDHDPDH---------IETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECCHHH---------HHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCHHH---------HHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 378889999999999999999754321 223345577665443322 222 2 257899888764
No 470
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=31.34 E-value=1.4e+02 Score=21.82 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=60.1
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEE-EccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH----
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 380 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~-~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---- 380 (477)
.+++++.+.. .....++...... +. .+. .....++....+. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~----~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNR----ELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLEEKRPDILLLDIIM-PHLDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCH----HHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 4567776652 3455566666554 21 121 2222233333332 36887765431 3334666666664
Q ss_pred cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 381 FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
...|+|+ .+..+. ..+.+..|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~~~ii~------ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 76 HQPNVIM------LTAFGQEDVTKKAVELGASYFILKPFD--MENLAHHIRQVYG 122 (130)
T ss_dssp SCCEEEE------EEETTCHHHHHHHHHTTCEEEEECSSC--CTTHHHHHHHHHH
T ss_pred CCCcEEE------EecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 2456662 233222 123345577889998887 8899999988875
No 471
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=31.33 E-value=1.1e+02 Score=30.79 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=40.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChh-hHHhhhhhhhhhcCcEEEeccch-----hhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-EVIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~~ 148 (477)
|||+|+... .+...-.++|.+.||+|..+..+++.... .............|++++..... ....+.
T Consensus 1 ~ri~~~~s~-------~~~~~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T 1z7e_A 1 MKTVVFAYH-------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (660)
T ss_dssp CEEEEEECH-------HHHHHHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCTTSHHHHHHHHH
T ss_pred CEEEEEEeC-------HHHHHHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCcHHHHHHHHh
Confidence 567666521 23334455666668998766654433210 00112344456678888654432 233456
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
.+||+|++-.
T Consensus 74 ~~~d~iv~~~ 83 (660)
T 1z7e_A 74 LSPDVIFSFY 83 (660)
T ss_dssp HCCSEEEEES
T ss_pred cCCCEEEEcC
Confidence 7888887643
No 472
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=31.29 E-value=1.4e+02 Score=26.95 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=45.4
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCE
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (477)
+++++-+-+. ..+..++.+++++.+. + ..++.++++ ..|+++..+- ...-.-.+.+|+..|++|
T Consensus 28 ~~~l~av~d~------~~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~~GkhV 93 (334)
T 3ohs_X 28 EHQVVAVAAR------DLSRAKEFAQKHDIPK-A-----YGSYEELAKDPNVEVAYVGTQ--HPQHKAAVMLCLAAGKAV 93 (334)
T ss_dssp TEEEEEEECS------SHHHHHHHHHHHTCSC-E-----ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHhcCCEE
Confidence 4677655553 2455677777777642 1 267888887 5899998876 444445578899999999
Q ss_pred E
Q 011779 386 L 386 (477)
Q Consensus 386 I 386 (477)
+
T Consensus 94 l 94 (334)
T 3ohs_X 94 L 94 (334)
T ss_dssp E
T ss_pred E
Confidence 9
No 473
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=31.27 E-value=75 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=26.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+|||+........ .-+..|+++|.+.| +|+|+.+....
T Consensus 1 Mp~ILlTNDDGi~a---pGi~~L~~~l~~~g-~V~VvAP~~~~ 39 (251)
T 2wqk_A 1 MPTFLLVNDDGYFS---PGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp -CEEEEECSSCTTC---HHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCEEEEEcCCCCCc---HHHHHHHHHHHhCC-CEEEEeeCCCC
Confidence 46787766543221 44788999999998 69998866543
No 474
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=31.13 E-value=2.6e+02 Score=25.31 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch-HHHHHHHHHHHhcCC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKI 337 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~-~~~~~l~~~~~~~~l 337 (477)
-+++.+| +-+.+.|.++|-. ...=...++.++.. -++.+.++|...-... ...+.+++.+++.|.
T Consensus 157 Ti~e~~g-~l~gl~va~vGD~-~~rva~Sl~~~~~~------------~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~ 222 (325)
T 1vlv_A 157 TIEENFG-RLKGVKVVFMGDT-RNNVATSLMIACAK------------MGMNFVACGPEELKPRSDVFKRCQEIVKETDG 222 (325)
T ss_dssp HHHHHHS-CSTTCEEEEESCT-TSHHHHHHHHHHHH------------TTCEEEEESCGGGCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhC-CcCCcEEEEECCC-CcCcHHHHHHHHHH------------CCCEEEEECCccccCCHHHHHHHHHHHHHcCC
Confidence 3445555 2356788999973 11112233333332 2689999997421111 233445666667762
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+.+. +++.+.+..+|++....
T Consensus 223 --~v~~~---~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 223 --SVSFT---SNLEEALAGADVVYTDV 244 (325)
T ss_dssp --EEEEE---SCHHHHHTTCSEEEECC
T ss_pred --eEEEE---cCHHHHHccCCEEEecc
Confidence 34433 67889999999887654
No 475
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=30.98 E-value=2.6e+02 Score=24.16 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=23.2
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+++|+ ||..-.=..+++.|.++|++|.++...
T Consensus 11 k~vlVT-----Gas~gIG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 11 KVVLVT-----GGARGQGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp CEEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEe-----CCCChHHHHHHHHHHHCCCeEEEEccc
Confidence 455666 233344568899999999999888744
No 476
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=30.94 E-value=3.1e+02 Score=24.98 Aligned_cols=85 Identities=6% Similarity=0.036 Sum_probs=51.9
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC-CcchHHHHHHHHHHHhcC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQKK 336 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~~ 336 (477)
-+++.+|- -+.+.|.++|-+ .+ ...++.++..+ ++.+.++|... .......+.+++.+++.|
T Consensus 169 TI~E~~G~-l~glkva~vGD~---~nva~Sl~~~~~~~------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G 232 (340)
T 4ep1_A 169 TIYEETNT-FKGIKLAYVGDG---NNVCHSLLLASAKV------------GMHMTVATPVGYRPNEEIVKKALAIAKETG 232 (340)
T ss_dssp HHHHHHSC-CTTCEEEEESCC---CHHHHHHHHHHHHH------------TCEEEEECCTTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCCCEEEEECCC---chhHHHHHHHHHHc------------CCEEEEECCcccCCCHHHHHHHHHHHHHcC
Confidence 44566663 356788899976 33 23344555443 57899998742 122234455566666666
Q ss_pred CCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
. .+.+ .+++.+.+..+|++....
T Consensus 233 ~--~v~~---~~d~~eav~~aDVvyt~~ 255 (340)
T 4ep1_A 233 A--EIEI---LHNPELAVNEADFIYTDV 255 (340)
T ss_dssp C--CEEE---ESCHHHHHTTCSEEEECC
T ss_pred C--eEEE---ECCHHHHhCCCCEEEecC
Confidence 3 3443 367888999999887654
No 477
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.91 E-value=2.6e+02 Score=26.43 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----h---h-hHH--HhcCCcEEEE
Q 011779 88 GGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----Q---E-TIN--TALKADLIVL 156 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----~---~-~~~--~~~~~DiV~~ 156 (477)
|=...+..|+..|+++ |+.|.++..+....... ..+.......|+.+++... . . .+. +..++|+|++
T Consensus 112 GKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~--~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VII 189 (433)
T 2xxa_A 112 GKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI--KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLV 189 (433)
T ss_dssp SHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHH--HHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHH--HHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3347788999999999 99999998654332111 1122223345777766431 0 1 121 2257999999
Q ss_pred cCcc
Q 011779 157 NTAV 160 (477)
Q Consensus 157 ~~~~ 160 (477)
-++.
T Consensus 190 DTpG 193 (433)
T 2xxa_A 190 DTAG 193 (433)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8854
No 478
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=30.83 E-value=1.8e+02 Score=26.49 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=46.1
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-chHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
+.+.|.++|-. ...=...++.++.. -++.+.+++...-. .....+..++.+++.|. .+.+.
T Consensus 154 ~gl~va~vGD~-~~~va~Sl~~~~~~------------~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~--- 215 (335)
T 1dxh_A 154 HDISYAYLGDA-RNNMGNSLLLIGAK------------LGMDVRIAAPKALWPHDEFVAQCKKFAEESGA--KLTLT--- 215 (335)
T ss_dssp GGCEEEEESCC-SSHHHHHHHHHHHH------------TTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC--EEEEE---
T ss_pred CCeEEEEecCC-ccchHHHHHHHHHH------------cCCEEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE---
Confidence 45788999975 11112333444333 26899999974211 11233445666666662 44443
Q ss_pred CCHHHHHHhcCEEEEcC
Q 011779 348 LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS 364 (477)
+++.+.+..+|++....
T Consensus 216 ~d~~eav~~aDvvytd~ 232 (335)
T 1dxh_A 216 EDPKEAVKGVDFVHTDV 232 (335)
T ss_dssp SCHHHHTTTCSEEEECC
T ss_pred eCHHHHhCCCCEEEeCC
Confidence 67889999999887644
No 479
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=30.66 E-value=88 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=24.7
Q ss_pred ccEEEEEeccCCCCchh-hHH--HHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLL--MELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~--~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+|+|+.++. -|.|.. .++ ..|-++-+++||++.|-+...
T Consensus 2 ~mkivaVta--CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs 43 (106)
T 2m1z_A 2 KRKIIAVTA--CATGVAHTYMAAQALKKGAKKMGNLIKVETQGA 43 (106)
T ss_dssp CCEEEEEEE--CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEET
T ss_pred CccEEEEEE--CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 467777753 234544 332 356666678999999999543
No 480
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=30.65 E-value=97 Score=29.40 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCccCCCccEEEEEeccCCCCchhhHHH-HHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcE---EEeccc
Q 011779 67 SPLSFMKSKLVLLVSHELSLSGGPLLLM-ELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ---VISAKG 141 (477)
Q Consensus 67 ~~~~~~~~~~Il~v~~~~~~gG~~~~~~-~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~---v~~~~~ 141 (477)
.+...|+++||.++.. | ..-. .++..|.+. ++++..++...... ........|+. +.....
T Consensus 76 ~~~~~~~~irigiIG~----G---~~g~~~~~~~l~~~~~~~lvav~d~~~~~-------~~~~a~~~g~~~~~~~~~~~ 141 (433)
T 1h6d_A 76 RPMPEDRRFGYAIVGL----G---KYALNQILPGFAGCQHSRIEALVSGNAEK-------AKIVAAEYGVDPRKIYDYSN 141 (433)
T ss_dssp SCCCCCCCEEEEEECC----S---HHHHHTHHHHTTTCSSEEEEEEECSCHHH-------HHHHHHHTTCCGGGEECSSS
T ss_pred CCCCCCCceEEEEECC----c---HHHHHHHHHHHhhCCCcEEEEEEcCCHHH-------HHHHHHHhCCCcccccccCC
Confidence 3455677889998873 2 2232 456666654 67776666432211 11111222332 223344
Q ss_pred hhhHHHhcCCcEEEEcCcchh
Q 011779 142 QETINTALKADLIVLNTAVAG 162 (477)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~ 162 (477)
...+....++|+|++.++...
T Consensus 142 ~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 142 FDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp GGGGGGCTTCCEEEECSCGGG
T ss_pred HHHHhcCCCCCEEEEcCCchh
Confidence 555555568999999886543
No 481
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.54 E-value=2.2e+02 Score=23.20 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=62.7
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc---ccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc-
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~- 381 (477)
..+++|+.+.+ .....+....+..+ .+...+ ..++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~~---~~~vv~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~ 76 (215)
T 1a04_A 5 PATILLIDDHP----MLRTGVKQLISMAP---DITVVGEASNGEQGIELAESLDPDLILLDLNM-PGMNGLETLDKLREK 76 (215)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHTTCT---TEEEEEEESSHHHHHHHHHHHCCSEEEEETTS-TTSCHHHHHHHHHHS
T ss_pred ceEEEEECCCH----HHHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHHh
Confidence 46777777762 34555566555432 222222 2233333332 36888765431 34456777776643
Q ss_pred --CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
..|+|+ .+..... .+.+..|..|++..|-+ .+++.++|..++.
T Consensus 77 ~~~~~ii~------ls~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (215)
T 1a04_A 77 SLSGRIVV------FSVSNHEEDVVTALKRGADGYLLKDME--PEDLLKALHQAAA 124 (215)
T ss_dssp CCCSEEEE------EECCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCCcEEE------EECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHc
Confidence 567772 2322221 23344577899999888 9999999998876
No 482
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=30.48 E-value=1.2e+02 Score=27.35 Aligned_cols=66 Identities=3% Similarity=-0.048 Sum_probs=41.6
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
++++++-+-+.. .+..++.+++++.. . ...++.++++ ..|+++..+- ...-.-.+.+|+..|++
T Consensus 27 ~~~~lvav~d~~------~~~~~~~a~~~~~~---~---~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 92 (336)
T 2p2s_A 27 AGAELAGVFESD------SDNRAKFTSLFPSV---P---FAASAEQLITDASIDLIACAVI--PCDRAELALRTLDAGKD 92 (336)
T ss_dssp TTCEEEEEECSC------TTSCHHHHHHSTTC---C---BCSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEeCCC------HHHHHHHHHhcCCC---c---ccCCHHHHhhCCCCCEEEEeCC--hhhHHHHHHHHHHCCCc
Confidence 677876444432 22334455555321 1 2367888887 5899888876 44344557789999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
|+
T Consensus 93 Vl 94 (336)
T 2p2s_A 93 FF 94 (336)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 483
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=30.23 E-value=1.7e+02 Score=26.19 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=46.0
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
...+|+++.... -.+.+..++..+...|.+|+++++..-..+.. +.......|.++......... ....|
T Consensus 154 ~gl~va~vGD~~----~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~----~~~~~~~~g~~~~~~~d~~ea--v~~aD 223 (308)
T 1ml4_A 154 DGLKIGLLGDLK----YGRTVHSLAEALTFYDVELYLISPELLRMPRH----IVEELREKGMKVVETTTLEDV--IGKLD 223 (308)
T ss_dssp SSEEEEEESCTT----TCHHHHHHHHHGGGSCEEEEEECCGGGCCCHH----HHHHHHHTTCCEEEESCTHHH--HTTCS
T ss_pred CCeEEEEeCCCC----cCchHHHHHHHHHHCCCEEEEECCccccCCHH----HHHHHHHcCCeEEEEcCHHHH--hcCCC
Confidence 346788876321 13789999999999999999999654333221 222233446554333333222 24688
Q ss_pred EEEEcC
Q 011779 153 LIVLNT 158 (477)
Q Consensus 153 iV~~~~ 158 (477)
+|+...
T Consensus 224 vvyt~~ 229 (308)
T 1ml4_A 224 VLYVTR 229 (308)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 888853
No 484
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=30.20 E-value=53 Score=29.86 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=27.3
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|++|+|++.. |....=..+++.|.++||+|.++......
T Consensus 23 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~~~ 61 (351)
T 3ruf_A 23 FSPKTWLITG------VAGFIGSNLLEKLLKLNQVVIGLDNFSTG 61 (351)
T ss_dssp HSCCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred CCCCeEEEEC------CCcHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3556776543 33355668888999999999999865443
No 485
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=30.11 E-value=1.3e+02 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.039 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
-.=..+++.|.++|++|.++...
T Consensus 40 gIG~~la~~l~~~G~~V~~~~r~ 62 (271)
T 4iin_A 40 GIGAEIAKTLASMGLKVWINYRS 62 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC
Confidence 45568899999999999888754
No 486
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.11 E-value=66 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=27.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+++|+.|+ .-+--|-.....+||..|+++|..|.++-.+.
T Consensus 40 ~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34555555 32222334778899999999999999998553
No 487
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=30.09 E-value=78 Score=26.61 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=26.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
+++++|++...... | .....++++.|.+.| +|+++....
T Consensus 17 l~~k~IllgvTGsi--a-a~k~~~ll~~L~~~g-~V~vv~T~~ 55 (209)
T 1mvl_A 17 PRKPRVLLAASGSV--A-AIKFGNLCHCFTEWA-EVRAVVTKS 55 (209)
T ss_dssp --CCEEEEEECSSG--G-GGGHHHHHHHHHTTS-EEEEEECTG
T ss_pred cCCCEEEEEEeCcH--H-HHHHHHHHHHHhcCC-CEEEEEcch
Confidence 45567777664321 2 245889999999999 999988554
No 488
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.01 E-value=64 Score=28.86 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.0
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
.++++.++..-+--|-.....+||..|++.|..|.++-.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34566666544334555788999999999999999987543
No 489
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=29.89 E-value=1.4e+02 Score=26.91 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=53.0
Q ss_pred HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC-EEeeccccccccCCCceEEeec--C--CceeeecCCCCCHHHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP-VLLQKCLYQGTAAGGTTEIVVN--G--TTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~~~~~~~~~~~gg~~e~v~~--~--~~G~l~~~~d~~~~~la~~ 426 (477)
..++.||++|..... .|+|--.++++.. +.+ +|. +++.-.......+ + .--+..+|.+ ...+++.
T Consensus 83 ~~l~~ADlvv~~G~~-lE~w~~~~~~~~~-~~~~~v~------~s~~i~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~ 152 (313)
T 1toa_A 83 EWLGNADLILYNGLH-LETKMGEVFSKLR-GSRLVVA------VSETIPVSQRLSLEEAEFDPHVWFDVKL--WSYSVKA 152 (313)
T ss_dssp HHHHHCSEEEECCTT-CSTTCHHHHHHHT-TSSEEEE------GGGGSCGGGSCBSTTSCBCCCGGGSHHH--HHHHHHH
T ss_pred HHHHcCCEEEEcCCC-cHHHHHHHHHhcc-CCCeEEE------eecCcccccccccCCCCCCCceeCCHHH--HHHHHHH
Confidence 457999999988764 7888888888876 445 551 2221000011000 0 1113344444 5667777
Q ss_pred HHHHHh--CHHHHHHHHHHHHHHHHH
Q 011779 427 IVKLAT--HVERRLTMGKRGYERVKE 450 (477)
Q Consensus 427 i~~ll~--~~~~~~~~~~~a~~~~~~ 450 (477)
|.+.+. ||+......+|+.++..+
T Consensus 153 I~~~L~~~DP~~a~~Y~~N~~~~~~~ 178 (313)
T 1toa_A 153 VYESLCKLLPGKTREFTQRYQAYQQQ 178 (313)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 777666 888888888887776643
No 490
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=29.84 E-value=3.1e+02 Score=24.72 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC-CcchHHHHHHHHHHHhcCC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~~l 337 (477)
-+++.+|- -+.+.|.++|-+ ..=...++.++..+ ++.+.+++... .......+..++.+++.|.
T Consensus 147 Ti~e~~g~-l~glkva~vGD~--~rva~Sl~~~~~~~------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~ 211 (323)
T 3gd5_A 147 TIRENFGR-LAGLKLAYVGDG--NNVAHSLLLGCAKV------------GMSIAVATPEGFTPDPAVSARASEIAGRTGA 211 (323)
T ss_dssp HHHHHHSC-CTTCEEEEESCC--CHHHHHHHHHHHHH------------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCC-CCCCEEEEECCC--CcHHHHHHHHHHHc------------CCEEEEECCCcccCCHHHHHHHHHHHHHcCC
Confidence 34555662 356788899976 11133455555443 57899998742 1122234455555666652
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+... .++.+.+..+|++....
T Consensus 212 --~v~~~---~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 212 --EVQIL---RDPFEAARGAHILYTDV 233 (323)
T ss_dssp --CEEEE---SCHHHHHTTCSEEEECC
T ss_pred --eEEEE---CCHHHHhcCCCEEEEec
Confidence 34332 67888999999887654
No 491
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=29.80 E-value=36 Score=31.46 Aligned_cols=41 Identities=12% Similarity=-0.083 Sum_probs=25.9
Q ss_pred CCccEEEEEeccCCCC-chh-hHHHHHHHHHHhCCcEEEEEec
Q 011779 72 MKSKLVLLVSHELSLS-GGP-LLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~g-G~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|+++||+++....+.- -.+ +.....+++|.+.||+|..+..
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i 43 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGI 43 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEE
Confidence 6788999887422110 000 2244678899999999988753
No 492
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=29.71 E-value=1e+02 Score=26.66 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=21.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEec
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
|+++|+. |..-.=..+++.|.+.|++|.+...
T Consensus 12 k~vlVTG-----as~gIG~aia~~l~~~G~~V~~~~r 43 (264)
T 3ucx_A 12 KVVVISG-----VGPALGTTLARRCAEQGADLVLAAR 43 (264)
T ss_dssp CEEEEES-----CCTTHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEC-----CCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 4555652 2223456788999999999988764
No 493
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.66 E-value=61 Score=26.88 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEecC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
..=..+++.|.++|++|.+++..
T Consensus 11 ~iG~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 11 RAGSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESC
T ss_pred hhHHHHHHHHHhCCCEEEEEEcC
Confidence 45567888999999999999865
No 494
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=29.56 E-value=1.7e+02 Score=25.62 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=39.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChh--hHHhhhhhhhhhcCcEEEeccch--hhHHH-h
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED--EVIYSLEHKMWDRGVQVISAKGQ--ETINT-A 148 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~~~~~~~~~~g~~v~~~~~~--~~~~~-~ 148 (477)
+|+|+++... ...=..+++.|.+.||+|.+++........ .....+ ..+...++.++..... ..+.. .
T Consensus 2 ~~~vlVtGat------G~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~~~v~~v~~D~~d~~~l~~~~ 74 (307)
T 2gas_A 2 ENKILILGPT------GAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQSLGVILLEGDINDHETLVKAI 74 (307)
T ss_dssp CCCEEEESTT------STTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CcEEEEECCC------chHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHhCCCEEEEeCCCCHHHHHHHH
Confidence 3566655422 233446677788889999998865311100 111011 1223456776654322 22222 2
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
..+|+|+...
T Consensus 75 ~~~d~vi~~a 84 (307)
T 2gas_A 75 KQVDIVICAA 84 (307)
T ss_dssp TTCSEEEECS
T ss_pred hCCCEEEECC
Confidence 3689887654
No 495
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.49 E-value=2.2e+02 Score=25.36 Aligned_cols=91 Identities=10% Similarity=0.059 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEccc--cCCHHHHHHhcC
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK--TLTVAPYLAAID 358 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~--~~~l~~~~~~aD 358 (477)
.|-...|..|+.-+.. + +.+ -.++++|... .....+++.++..|-. -+-+|+|- .+.....+..=|
T Consensus 56 ~kT~e~L~~Aa~~I~~-i-----~~~-~~ILfVgTk~----~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePd 124 (305)
T 3iz6_A 56 GKTWEKLQLAARVIVA-I-----ENP-QDIIVQSARP----YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124 (305)
T ss_dssp HHHHHHHHHHHHHHHH-T-----TSS-CCEEEECCSH----HHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCS
T ss_pred HHHHHHHHHHHHHHHH-H-----hCC-CeEEEEeCcH----HHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCc
Confidence 3445556666655543 2 113 3577888762 2233455566655421 01134442 122223356678
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++|+..- ..| -..+.||...|+|+|
T Consensus 125 llvV~Dp-~~d--~qAI~EA~~lnIPtI 149 (305)
T 3iz6_A 125 LLILTDP-RTD--HQPIKESALGNIPTI 149 (305)
T ss_dssp EEEESCT-TTT--HHHHHHHHHHTCCEE
T ss_pred eeEEeCc-ccc--hHHHHHHHHcCCCEE
Confidence 8777654 133 367899999999999
No 496
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=29.46 E-value=88 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
|+||+........ .-+..|+++|++.| +|.|+.+....
T Consensus 2 M~ILlTNDDGi~a---pGi~aL~~~L~~~g-~V~VVAP~~~~ 39 (254)
T 2v4n_A 2 MRILLSNDDGVHA---PGIQTLAKALREFA-DVQVVAPDRNR 39 (254)
T ss_dssp CEEEEECSSCTTC---HHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCCCCCC---HHHHHHHHHHHhCC-cEEEEeeCCCC
Confidence 6888776543221 45888999998886 99999976543
No 497
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=29.35 E-value=2.1e+02 Score=24.83 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE--EEcccc--CCHHHHHHhc
Q 011779 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV--HFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v--~~~g~~--~~l~~~~~~a 357 (477)
.|=...|.+|+.-+. .. . ..-+++++|... .....+++.++..|-. .| .|+|-. +-....+..=
T Consensus 85 ~kT~~~L~~A~~~i~-~~-----~-~~~~iLfVgTk~----~aq~~V~~~A~~~g~~-yv~~RWlgG~LTN~~~~~f~~P 152 (253)
T 3bch_A 85 KRTWEKLLLAARAIV-AI-----E-NPADVSVISSRN----TGQRAVLKFAAATGAT-PIAGRFTPGTFTNQIQAAFREP 152 (253)
T ss_dssp HHHHHHHHHHHHHHH-TC-----S-SGGGEEEEECSH----HHHHHHHHHHHHHCCE-EEESCCCTTTTTCCSCSTTCSC
T ss_pred HHHHHHHHHHHHHHH-HH-----h-CCCeEEEEeCCH----HHHHHHHHHHHHhCCe-eecceecCCcccCccccccCCC
Confidence 344455555555543 11 1 234567788762 2234455666665532 11 344421 1111234557
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
|++++... ..| -..+.||...|+|+|+ ..|+-..++.| -+.+|.+|+. -.-...+..++.
T Consensus 153 dlliV~Dp-~~e--~~AI~EA~~lgIPvIa------lvDTn~dp~~V-----Dy~IP~Ndds-~~SI~Li~~lla 212 (253)
T 3bch_A 153 RLLVVTDP-RAD--HQPLTEASYVNLPTIA------LCNTDSPLRYV-----DIAIPCNNKG-AHSVGLMWWMLA 212 (253)
T ss_dssp SEEEESCT-TTT--HHHHHHHHHTTCCEEE------EECTTCCCTTC-----SEEEESCCSS-HHHHHHHHHHHH
T ss_pred CEEEEECC-Ccc--chHHHHHHHhCCCEEE------EEcCCCCcccC-----ceEeecCCcc-hhhHHHHHHHHH
Confidence 77776543 133 3689999999999993 22333333322 3666666643 333344444443
No 498
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=29.32 E-value=3.4e+02 Score=25.02 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=64.9
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (477)
+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. ..+|
T Consensus 2 ~ILIVDDd~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~DlvllD~~m-p~~dG~ell~~lr~~~~~~p 74 (387)
T 1ny5_A 2 NVLVIEDDK----VFRGLLEEYLSMKGI--KVESAERGKEAYKLLSEKHFNVVLLDLLL-PDVNGLEILKWIKERSPETE 74 (387)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHHTC--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCc
Confidence 355666542 355666666665554 3443333333333443 35877754331 3445666666654 4678
Q ss_pred EEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 385 VLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
||+ .|..+.. .+.+..|..+++..|-+ .+++...|.+++....
T Consensus 75 vIv------lT~~~~~~~~~~a~~~Ga~dyl~KP~~--~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 75 VIV------ITGHGTIKTAVEAMKMGAYDFLTKPCM--LEEIELTINKAIEHRK 120 (387)
T ss_dssp EEE------EEETTCHHHHHHHHTTTCCEEEEESCC--HHHHHHHHHHHHHHHH
T ss_pred EEE------EeCCCCHHHHHHHHhcCceEEecCCCC--HHHHHHHHHHHHHHHH
Confidence 773 3333332 23345677889999888 9999999999886433
No 499
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=29.23 E-value=48 Score=29.53 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.2
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (477)
++|+|++.. |....=..+++.|.++||+|.+++...
T Consensus 6 ~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 6 LKHRILITG------GAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp -CCEEEEET------TTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCCeEEEEC------CCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 356776553 333556688889999999999998544
No 500
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=29.14 E-value=1.4e+02 Score=24.30 Aligned_cols=40 Identities=20% Similarity=-0.001 Sum_probs=28.0
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
.++++|+++... |.+ .-+......|.+.|++|.+++...+
T Consensus 21 ~~~~kV~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~~ 61 (193)
T 1oi4_A 21 GLSKKIAVLITD----EFEDSEFTSPADEFRKAGHEVITIEKQAG 61 (193)
T ss_dssp TCCCEEEEECCT----TBCTHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred ccCCEEEEEECC----CCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 345789988753 222 3455677788889999999986643
Done!