Query 011782
Match_columns 477
No_of_seqs 313 out of 2089
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 1.7E-27 3.7E-32 236.4 27.3 234 77-441 11-245 (266)
2 COG0730 Predicted permeases [G 100.0 6.3E-27 1.4E-31 231.2 28.2 239 77-442 6-246 (258)
3 PF01925 TauE: Sulfite exporte 99.9 1.4E-25 2.9E-30 218.4 24.5 230 82-442 2-236 (240)
4 PRK10621 hypothetical protein; 99.3 7.7E-11 1.7E-15 117.2 18.2 112 83-201 144-255 (266)
5 COG0730 Predicted permeases [G 99.2 4.9E-10 1.1E-14 110.8 19.1 109 84-199 144-253 (258)
6 PF01925 TauE: Sulfite exporte 99.0 6.9E-09 1.5E-13 100.9 15.0 101 84-195 136-239 (240)
7 PF02673 BacA: Bacitracin resi 91.4 16 0.00036 36.3 21.6 86 352-437 159-250 (259)
8 PF04018 DUF368: Domain of unk 91.3 17 0.00036 36.3 23.0 86 337-443 143-228 (257)
9 PRK00281 undecaprenyl pyrophos 87.1 35 0.00076 34.2 21.4 89 342-431 154-247 (268)
10 COG1968 BacA Undecaprenyl pyro 85.9 40 0.00088 33.8 22.9 79 100-182 29-114 (270)
11 COG2119 Predicted membrane pro 64.6 41 0.00088 31.9 8.3 51 150-200 135-185 (190)
12 TIGR02840 spore_YtaF putative 57.7 1.8E+02 0.0039 27.8 20.1 52 150-201 28-83 (206)
13 KOG2881 Predicted membrane pro 55.9 1.4E+02 0.003 30.0 10.6 47 158-204 109-155 (294)
14 PF04066 MrpF_PhaF: Multiple r 53.0 77 0.0017 23.7 6.7 54 372-425 2-55 (55)
15 COG3180 AbrB Putative ammonia 51.6 1.4E+02 0.003 31.2 10.5 97 334-452 9-105 (352)
16 PF07698 7TM-7TMR_HD: 7TM rece 50.2 2.1E+02 0.0046 26.5 14.5 59 360-430 70-128 (194)
17 PF01169 UPF0016: Uncharacteri 48.5 46 0.001 26.8 5.2 41 151-191 36-76 (78)
18 PRK11469 hypothetical protein; 45.7 2.7E+02 0.0058 26.3 20.6 42 159-201 48-89 (188)
19 PF11169 DUF2956: Protein of u 41.2 56 0.0012 27.8 4.7 15 197-211 32-46 (103)
20 PF09605 Trep_Strep: Hypotheti 40.9 96 0.0021 29.2 7.0 33 400-432 153-185 (186)
21 TIGR00801 ncs2 uracil-xanthine 40.8 3.4E+02 0.0073 28.8 11.9 41 357-398 20-62 (415)
22 TIGR00659 conserved hypothetic 38.6 3.9E+02 0.0084 26.2 18.3 67 359-427 102-169 (226)
23 PRK12554 undecaprenyl pyrophos 37.9 4.4E+02 0.0095 26.5 21.2 80 352-431 165-250 (276)
24 TIGR02185 Trep_Strep conserved 36.6 3.3E+02 0.0072 25.6 9.9 32 401-432 157-188 (189)
25 PF11044 TMEMspv1-c74-12: Plec 35.1 1.7E+02 0.0038 21.1 5.7 16 197-212 25-40 (49)
26 COG2966 Uncharacterized conser 34.5 3.1E+02 0.0068 27.2 9.7 19 449-467 211-229 (250)
27 PF11833 DUF3353: Protein of u 33.5 2.4E+02 0.0051 26.9 8.3 28 150-177 138-165 (194)
28 TIGR00892 2A0113 monocarboxyla 32.9 4.2E+02 0.009 28.0 11.2 17 160-176 380-396 (455)
29 PRK10263 DNA translocase FtsK; 32.5 7.5E+02 0.016 30.6 13.7 14 344-357 70-83 (1355)
30 TIGR03082 Gneg_AbrB_dup membra 31.9 3.9E+02 0.0084 24.2 10.5 75 341-439 5-81 (156)
31 PRK12600 putative monovalent c 30.7 2.9E+02 0.0062 23.2 7.4 54 371-424 30-83 (94)
32 PRK00968 tetrahydromethanopter 29.9 78 0.0017 30.6 4.3 52 40-109 115-166 (240)
33 TIGR01112 mtrD N5-methyltetrah 29.8 72 0.0016 30.4 4.0 28 83-115 139-166 (223)
34 PF11368 DUF3169: Protein of u 29.8 5.4E+02 0.012 25.1 13.4 16 456-471 152-167 (248)
35 COG1971 Predicted membrane pro 29.7 2.8E+02 0.0061 26.4 8.0 42 159-201 48-89 (190)
36 PF05232 BTP: Bacterial Transm 29.6 1.3E+02 0.0028 23.5 4.9 39 100-138 18-56 (67)
37 COG1346 LrgB Putative effector 29.4 5.6E+02 0.012 25.2 16.7 54 366-427 113-172 (230)
38 COG4300 CadD Predicted permeas 28.9 1.5E+02 0.0032 28.1 5.8 50 150-199 37-87 (205)
39 PF04207 MtrD: Tetrahydrometha 28.7 69 0.0015 30.7 3.7 25 83-110 139-163 (223)
40 COG2035 Predicted membrane pro 27.8 6.5E+02 0.014 25.4 25.1 74 82-178 8-81 (276)
41 PRK12599 putative monovalent c 26.3 3.8E+02 0.0082 22.3 7.5 54 371-424 32-85 (91)
42 PRK10263 DNA translocase FtsK; 26.2 3.4E+02 0.0073 33.4 9.5 22 158-179 140-161 (1355)
43 PRK01844 hypothetical protein; 25.8 1.8E+02 0.0039 23.3 5.0 26 408-433 10-35 (72)
44 COG3619 Predicted membrane pro 25.7 6.4E+02 0.014 24.7 11.1 37 148-184 167-203 (226)
45 PRK06161 putative monovalent c 25.5 3.7E+02 0.0081 22.2 7.2 54 370-423 29-82 (89)
46 PF11085 YqhR: Conserved membr 25.4 5.7E+02 0.012 24.0 11.6 63 339-401 23-96 (173)
47 PF04172 LrgB: LrgB-like famil 25.3 6.3E+02 0.014 24.5 14.5 66 359-426 92-158 (215)
48 PRK10720 uracil transporter; P 25.2 6.1E+02 0.013 27.0 10.7 35 358-401 30-65 (428)
49 PF02652 Lactate_perm: L-lacta 24.9 9.6E+02 0.021 26.5 12.6 39 86-125 109-148 (522)
50 PF04279 IspA: Intracellular s 24.4 5.8E+02 0.013 23.8 13.5 16 177-192 77-92 (176)
51 PF02705 K_trans: K+ potassium 24.2 5.4E+02 0.012 28.5 10.1 36 156-191 389-424 (534)
52 COG3416 Uncharacterized protei 23.9 55 0.0012 31.5 2.2 26 85-110 137-162 (233)
53 PRK12604 putative monovalent c 23.6 4.1E+02 0.009 21.8 7.4 53 371-423 28-80 (84)
54 PF02652 Lactate_perm: L-lacta 23.6 1E+03 0.022 26.3 12.6 41 344-384 109-150 (522)
55 PRK12585 putative monovalent c 23.4 2.9E+02 0.0064 26.3 6.8 27 407-433 72-98 (197)
56 PTZ00370 STEVOR; Provisional 23.3 5.8E+02 0.013 25.9 9.2 16 163-178 242-257 (296)
57 PF09835 DUF2062: Uncharacteri 23.2 5.4E+02 0.012 22.9 14.3 47 77-126 21-67 (154)
58 PRK12657 putative monovalent c 23.2 4.5E+02 0.0098 22.3 7.4 54 371-424 34-87 (100)
59 PRK12612 putative monovalent c 22.9 4.3E+02 0.0093 21.7 7.3 55 370-424 29-83 (87)
60 PRK10711 hypothetical protein; 22.8 7.3E+02 0.016 24.3 14.3 64 362-427 106-170 (231)
61 COG4280 Predicted membrane pro 22.8 5.5E+02 0.012 24.8 8.5 34 173-206 58-91 (236)
62 PRK00523 hypothetical protein; 22.7 2.1E+02 0.0045 22.9 4.8 24 409-432 12-35 (72)
63 PF06912 DUF1275: Protein of u 22.6 6.4E+02 0.014 23.6 11.4 39 151-189 164-202 (209)
64 COG1972 NupC Nucleoside permea 22.5 3.9E+02 0.0085 28.3 8.1 21 100-121 292-312 (404)
65 COG2119 Predicted membrane pro 22.0 3.5E+02 0.0076 25.7 7.0 48 150-197 36-83 (190)
66 TIGR00795 lctP L-lactate trans 21.8 1.1E+03 0.024 26.0 12.9 44 83-127 112-156 (530)
67 PF10399 UCR_Fe-S_N: Ubiquitin 21.2 42 0.0009 23.8 0.6 15 95-109 23-37 (41)
68 PRK08381 putative monovalent c 20.2 5E+02 0.011 21.4 7.4 53 371-423 31-83 (87)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-27 Score=236.44 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011782 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLAL 156 (477)
Q Consensus 77 ~~~i~~~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l 156 (477)
..+..+++|+++|+++++.| |||.+.+|+|. .+|+||++|++||++.++.+++++.+.|.|+++ +||+...
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~-~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~ 81 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALL-AAGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQK 81 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHH
Confidence 34566678888999999999 99999999998 579999999999999999999999999889898 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhhhhHHHHHHHHhhhcCCCCCccccCCCCC
Q 011782 157 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIGNGYQTEECKCDPEY 236 (477)
Q Consensus 157 ~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
.+.+++++|+.+|+++..++|++.++.+++++++..+.+++.+ ++. ++ + +
T Consensus 82 ~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~------~~~--~~--------------------~--~ 131 (266)
T PRK10621 82 LNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM------PKL--GE--------------------E--D 131 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC------Ccc--cc--------------------c--c
Confidence 9999999999999999999999999999999888887765432 100 00 0 0
Q ss_pred CCCCCCCccccCccccchhHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHhhhhccccchhhHHHHHHHHh
Q 011782 237 LSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVALYK 316 (477)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~i~k~~~~~cs~~yw~l~~~~~pv~~~~~~~~~~~l~~ 316 (477)
+ +++
T Consensus 132 ~-------------~~~--------------------------------------------------------------- 135 (266)
T PRK10621 132 R-------------QRR--------------------------------------------------------------- 135 (266)
T ss_pred c-------------ccc---------------------------------------------------------------
Confidence 0 000
Q ss_pred hhhccccCCCCCcccchhhHHHHHHHHHHHHHHHhhhccccchhhHHHH-hhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 011782 317 GRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYY 395 (477)
Q Consensus 317 ~~~~~~~~g~~~~~~~~~~~~~~~l~G~~aG~isGllGiGGG~i~~Pll-l~~Gi~p~vAsATs~~~~~fss~~s~~~y~ 395 (477)
++. .......|+.+|+++|++|+|||++++|.+ ..++.|++++.+|+++..++++..++..|.
T Consensus 136 --------------~~~--~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~ 199 (266)
T PRK10621 136 --------------LYG--LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFI 199 (266)
T ss_pred --------------ccc--hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001234689999999999999999999877 577999999999999999999999999999
Q ss_pred HhcCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011782 396 LLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTLS 441 (477)
Q Consensus 396 ~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~~~~~r~~lii~ll~ 441 (477)
..|.+||..++.+.+++++|+++|.++.+|++++..|+.+..+++.
T Consensus 200 ~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~ 245 (266)
T PRK10621 200 LGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAV 245 (266)
T ss_pred hCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988775543
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=231.16 Aligned_cols=239 Identities=25% Similarity=0.385 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011782 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLAL 156 (477)
Q Consensus 77 ~~~i~~~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l 156 (477)
..++.+++|+++|+++++.|+|||.+.+|.|.. +++||++|.+++++....++..+.+.|+|++| +||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHH
Confidence 456677888888888999999999999999996 56999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhhhhHHHHHHHHhhhcCCCCCccccCCCCC
Q 011782 157 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIGNGYQTEECKCDPEY 236 (477)
Q Consensus 157 ~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 236 (477)
.+.+++++|+.+|+++..++|++.++.++.+++++.+.+++++... .++| + +.
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~-------~~~~-------------------~-~~ 130 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL-------AKAE-------------------D-RA 130 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc-------cccc-------------------c-cc
Confidence 9999999999999999999999999999999999999888765210 0000 0 00
Q ss_pred CCCCCCCccccCccccchhHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHhhhhccccchhhHHHHHHHHh
Q 011782 237 LSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVALYK 316 (477)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~i~k~~~~~cs~~yw~l~~~~~pv~~~~~~~~~~~l~~ 316 (477)
++.
T Consensus 131 --------------~~~--------------------------------------------------------------- 133 (258)
T COG0730 131 --------------ARL--------------------------------------------------------------- 133 (258)
T ss_pred --------------ccc---------------------------------------------------------------
Confidence 000
Q ss_pred hhhccccCCCCCcccchhhHHHHHHHHHHHHHHHhhhccccchhhHHHHh-hcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 011782 317 GRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLFL-ELGIPPQVSSATALFAITFSSSMSVVEYY 395 (477)
Q Consensus 317 ~~~~~~~~g~~~~~~~~~~~~~~~l~G~~aG~isGllGiGGG~i~~Plll-~~Gi~p~vAsATs~~~~~fss~~s~~~y~ 395 (477)
. ++.......+|+.+|+++|++|+|||+..+|.+. ..+.|.+.+.+|+.+.++++++.+...|.
T Consensus 134 ------------~---~~~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~ 198 (258)
T COG0730 134 ------------R---PLLFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYL 198 (258)
T ss_pred ------------C---cchhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001123567899999999999999999999995 67899999999999999999999999999
Q ss_pred H-hcCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011782 396 L-LKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTLSF 442 (477)
Q Consensus 396 ~-~G~i~~~~al~l~~~a~iga~lG~~l~~kl~~~~~r~~lii~ll~~ 442 (477)
. .|.+||.++..+.+++++|+++|+++.+|++++..|+.+.++++..
T Consensus 199 ~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~ 246 (258)
T COG0730 199 FALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAV 246 (258)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8 6999999988999999999999999999999999999887655543
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.94 E-value=1.4e-25 Score=218.38 Aligned_cols=230 Identities=26% Similarity=0.422 Sum_probs=193.3
Q ss_pred HHHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 011782 82 TIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLALLFQPL 161 (477)
Q Consensus 82 ~~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l~~~~~ 161 (477)
+++++++|++++..|+|||.+.+|+|.. + +|+++|++++......++..+++.|+|+++ +||+...++.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 4567777778888899999999999997 5 899999999999999999999999888887 999999999999
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhHHHhHhhhhhHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 011782 162 LVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIGNGYQTEECKCDPEYLSNDT 241 (477)
Q Consensus 162 ~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~~~~kke~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (477)
+++|+.+|+++..++|++.++.+++++++..+.+++++ +..+.+ + +++
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~------~~~~~~---------------------~-~~~---- 120 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK------KRRKTP---------------------K-SRS---- 120 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc------cccccc---------------------c-ccc----
Confidence 99999999999999999999999999999988877643 100000 0 000
Q ss_pred CCccccCccccchhHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHhhhhccccchhhHHHHHHHHhhhhcc
Q 011782 242 TPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVALYKGRRKI 321 (477)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~i~k~~~~~cs~~yw~l~~~~~pv~~~~~~~~~~~l~~~~~~~ 321 (477)
.+.+
T Consensus 121 -------~~~~--------------------------------------------------------------------- 124 (240)
T PF01925_consen 121 -------SPPK--------------------------------------------------------------------- 124 (240)
T ss_pred -------cccc---------------------------------------------------------------------
Confidence 0000
Q ss_pred ccCCCCCcccchhhHHHHHHHHHH-HHHHHhhhccccchhhHHHHhh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011782 322 ASKGDEGTKWRASQLVFYCACGIT-AGMVGGLLGLGGGFILGPLFLE-LGIPPQVSSATALFAITFSSSMSVVEYYLLKR 399 (477)
Q Consensus 322 ~~~g~~~~~~~~~~~~~~~l~G~~-aG~isGllGiGGG~i~~Plll~-~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~ 399 (477)
......+|.+ +|+++|++|+|||.+..|++.+ .|.||+++.||+.+++++++..+...|+..|.
T Consensus 125 --------------~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~ 190 (240)
T PF01925_consen 125 --------------RWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGD 190 (240)
T ss_pred --------------hhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 0012234445 9999999999999999999974 79999999999999999999999999999999
Q ss_pred cchhHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011782 400 FPVPYALY---FFALSIIAAFVGQHVLKKLIKILGRASIIIFTLSF 442 (477)
Q Consensus 400 i~~~~al~---l~~~a~iga~lG~~l~~kl~~~~~r~~lii~ll~~ 442 (477)
+|++...+ +.+++++|+++|+++.+|++++..|+.+.++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~ 236 (240)
T PF01925_consen 191 VDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLS 236 (240)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99997777 99999999999999999999999999887766543
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.32 E-value=7.7e-11 Score=117.23 Aligned_cols=112 Identities=13% Similarity=0.231 Sum_probs=99.2
Q ss_pred HHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHH
Q 011782 83 IIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLALLFQPLL 162 (477)
Q Consensus 83 ~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l~~~~~~ 162 (477)
.+|+++|+++++.|+|||.+.+|.+...++.|++++++++....+.+++.+...|...++ +||..+..+.+++
T Consensus 144 ~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~-------v~~~~~l~l~~g~ 216 (266)
T PRK10621 144 IAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGK-------VIWATGFVMLVGQ 216 (266)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe-------ehHHHHHHHHHHH
Confidence 345555556666699999999999988899999999999998888888888887777777 8999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 163 VLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (477)
Q Consensus 163 ~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~ 201 (477)
++|+.+|+++++.+|++.+|.++..+++.++.+++++.+
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~ 255 (266)
T PRK10621 217 FLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH 255 (266)
T ss_pred HHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987754
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.24 E-value=4.9e-10 Score=110.80 Aligned_cols=109 Identities=26% Similarity=0.374 Sum_probs=95.8
Q ss_pred HHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCcccHHHHHHHHHHH
Q 011782 84 IGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLR-QRHPTLDIPVIDYDLALLFQPLL 162 (477)
Q Consensus 84 ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~-~~~p~~~~p~id~~l~l~~~~~~ 162 (477)
+|+++|++++..|+|||...+|.+....+.|.+.+++||.+.++.++..+...|.. .++ +||..+..+.+++
T Consensus 144 ~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~l~~g~ 216 (258)
T COG0730 144 IGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGA-------VDWPLALLLAVGS 216 (258)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHH
Confidence 33444444445599999999999999999999999999999999888888888777 687 9999998899999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 011782 163 VLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLK 199 (477)
Q Consensus 163 ~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k 199 (477)
++|+.+|+++.+++|++.+|.++..+++.++.+++++
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~ 253 (258)
T COG0730 217 ILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLR 253 (258)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888765
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.01 E-value=6.9e-09 Score=100.92 Aligned_cols=101 Identities=27% Similarity=0.491 Sum_probs=90.6
Q ss_pred HHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHH---HHH
Q 011782 84 IGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLALL---FQP 160 (477)
Q Consensus 84 ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l~---~~~ 160 (477)
.|+++|++ |+|||.+.+|++....++|++++.+|+....+.++..+...|...+. +||+.... ..+
T Consensus 136 ~G~~~G~~----g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~ 204 (240)
T PF01925_consen 136 IGFLSGLF----GIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGD-------VDWPMLLLSLILLP 204 (240)
T ss_pred hhHHHhhh----hccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHH
Confidence 66666555 99999999999997789999999999999999999999998888887 89998777 999
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 011782 161 LLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTR 195 (477)
Q Consensus 161 ~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~ 195 (477)
++++|+.+|.++.+++|++.++.++.++++.++.+
T Consensus 205 ~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 205 GAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765
No 7
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=91.40 E-value=16 Score=36.33 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=55.9
Q ss_pred hhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-hcC-----cchhHHHHHHHHHHHHHHHHHHHHHH
Q 011782 352 LLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYL-LKR-----FPVPYALYFFALSIIAAFVGQHVLKK 425 (477)
Q Consensus 352 llGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~-~G~-----i~~~~al~l~~~a~iga~lG~~l~~k 425 (477)
+=|+.=.-......+..|++++.|.-=|-++..+....+.+--.. ..+ .++.....-++.+++.+++.-+...|
T Consensus 159 ~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~ 238 (259)
T PF02673_consen 159 IPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLR 238 (259)
T ss_pred CCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677778899999999888888887776655553222 221 23444445566677777777777777
Q ss_pred hHHHHHHHHHHH
Q 011782 426 LIKILGRASIII 437 (477)
Q Consensus 426 l~~~~~r~~lii 437 (477)
+.++...+.+.+
T Consensus 239 ~~~~~~~~~F~~ 250 (259)
T PF02673_consen 239 FLKRRKLRPFAI 250 (259)
T ss_pred HHhhCCceeehh
Confidence 777665554433
No 8
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=91.33 E-value=17 Score=36.27 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q 011782 337 VFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAA 416 (477)
Q Consensus 337 ~~~~l~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga 416 (477)
+...++|++++.-==+=|+.|.++ |+.+|.=..+..|-+.+.. -|+.....+..++.+|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 345556665555444557766643 3344443333333333322 47788889999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011782 417 FVGQHVLKKLIKILGRASIIIFTLSFI 443 (477)
Q Consensus 417 ~lG~~l~~kl~~~~~r~~lii~ll~~~ 443 (477)
.+-+++.+++-+++.+..+.. +++.+
T Consensus 203 ~~~skll~~ll~~~~~~t~~~-i~Glv 228 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAF-IIGLV 228 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999997766543 34333
No 9
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=87.09 E-value=35 Score=34.20 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHh-cC---cchhHHHHHHHHHHHHH
Q 011782 342 CGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVV-EYYLL-KR---FPVPYALYFFALSIIAA 416 (477)
Q Consensus 342 ~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~-~y~~~-G~---i~~~~al~l~~~a~iga 416 (477)
.|+.-++ +=+=|+.=--......+.+|++++.|.--|-++..+.-..+.+ +..-. +. .++...+.-++.+++.+
T Consensus 154 IGl~Q~l-AliPGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g 232 (268)
T PRK00281 154 IGLAQCL-ALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVA 232 (268)
T ss_pred HHHHHHH-HhCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 3433333 2335666555666677889999999988888888776655444 22111 11 23322233344455555
Q ss_pred HHHHHHHHHhHHHHH
Q 011782 417 FVGQHVLKKLIKILG 431 (477)
Q Consensus 417 ~lG~~l~~kl~~~~~ 431 (477)
++.-+...|+.++..
T Consensus 233 ~~~I~~ll~~~~~~~ 247 (268)
T PRK00281 233 LIAIKWLLKYIKRHS 247 (268)
T ss_pred HHHHHHHHHHHHhCC
Confidence 555555555555543
No 10
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=85.92 E-value=40 Score=33.78 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhc----C-CC--CCCCcccHHHHHHHHHHHHHHHHHHHHh
Q 011782 100 GGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQR----H-PT--LDIPVIDYDLALLFQPLLVLGISIGVAF 172 (477)
Q Consensus 100 G~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~----~-p~--~~~p~id~~l~l~~~~~~~~G~~iGa~l 172 (477)
=.++++-+. |..+. +..-.....+++-++-.++|+++= + ++ .|...=+|++.+...++.++-+.+|..+
T Consensus 29 Hlilv~~~l---~~~~~-~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~ 104 (270)
T COG1968 29 HLILVGHLL---GFSDA-GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLF 104 (270)
T ss_pred HHHHHHHHH---CcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHH
Confidence 445555555 33222 444455566677666666555321 1 00 1111112778888999999999999988
Q ss_pred hhhchHHHHH
Q 011782 173 NVIFADWMIT 182 (477)
Q Consensus 173 ~~~lp~~~l~ 182 (477)
...+.+.+..
T Consensus 105 ~d~i~~~l~~ 114 (270)
T COG1968 105 KDFIKSHLFN 114 (270)
T ss_pred HHHHHHHccC
Confidence 8877665544
No 11
>COG2119 Predicted membrane protein [Function unknown]
Probab=64.57 E-value=41 Score=31.87 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 150 IDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKG 200 (477)
Q Consensus 150 id~~l~l~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~ 200 (477)
+-....+-+.++++++...|-++++++|++.++.+-++++++.+..++++.
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667899999999999999999999999999999999888777653
No 12
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=57.67 E-value=1.8e+02 Score=27.84 Aligned_cols=52 Identities=8% Similarity=0.211 Sum_probs=40.5
Q ss_pred ccHHHHHHH----HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 150 IDYDLALLF----QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (477)
Q Consensus 150 id~~l~l~~----~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~ 201 (477)
+.++..+.+ ..+..+|..+|..+..++|+++-.++-.++|++.+.+++++++
T Consensus 28 ~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 28 IPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345554444 4677788888888888998887888889999999999998764
No 13
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=55.94 E-value=1.4e+02 Score=30.01 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 011782 158 FQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETW 204 (477)
Q Consensus 158 ~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~~~~ 204 (477)
+.++.++.+.+|-.....+|.+.-..+-.+++++.++|+++.|.++-
T Consensus 109 L~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~ 155 (294)
T KOG2881|consen 109 LALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMS 155 (294)
T ss_pred HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44677788888877778888888888888899999999999886553
No 14
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=52.99 E-value=77 Score=23.65 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011782 372 PQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKK 425 (477)
Q Consensus 372 p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~k 425 (477)
|++..|...+.............+.....-.+.++.+.+.+++|+..-++..+|
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567788888888888888888877766677888899999999888877766543
No 15
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=51.57 E-value=1.4e+02 Score=31.17 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Q 011782 334 SQLVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSI 413 (477)
Q Consensus 334 ~~~~~~~l~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~ 413 (477)
+++......++..|...-++++..+.++++.++ +.++.-....++++|-.+....-.+
T Consensus 9 ~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~----------------------a~~v~~~~~~~l~~P~~l~~~~q~i 66 (352)
T COG3180 9 LQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLL----------------------AGIVAGLRGLTLPLPRGLFKAGQVI 66 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------HHHHHHhccccccCChHHHHHHHHH
Confidence 344556777888888888899988888874321 1122224445677887788888889
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011782 414 IAAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALSLG 452 (477)
Q Consensus 414 iga~lG~~l~~kl~~~~~r~~lii~ll~~~i~is~i~l~ 452 (477)
+|..+|+++.......+.+...+++.+......+++.++
T Consensus 67 lG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g 105 (352)
T COG3180 67 LGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLG 105 (352)
T ss_pred HHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999888888888866665555555555555554
No 16
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=50.24 E-value=2.1e+02 Score=26.48 Aligned_cols=59 Identities=19% Similarity=0.363 Sum_probs=34.9
Q ss_pred hhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011782 360 ILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKIL 430 (477)
Q Consensus 360 i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~~~~ 430 (477)
...|+++..=++++.|..++.+..++.+... ..|.+...+ .++++.+|...++|..+|.
T Consensus 70 a~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~~----~l~~~~~~~~~~~~~~~R~ 128 (194)
T PF07698_consen 70 AAAAMLLTILIDPRLAILASLFLSLLASLLF--------GFDFEFFLY----SLVSGIVAIFSVRRIRSRS 128 (194)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--------cccHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344455566778888877777766666553 334444444 4555566666666665543
No 17
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=48.50 E-value=46 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 011782 151 DYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLV 191 (477)
Q Consensus 151 d~~l~l~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~ 191 (477)
-.-...-+.....++..+|.++.+++|++.++.+-+++++.
T Consensus 36 ~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 36 FAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33445556688889999999999999999999988877665
No 18
>PRK11469 hypothetical protein; Provisional
Probab=45.66 E-value=2.7e+02 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 159 QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (477)
Q Consensus 159 ~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~ 201 (477)
..+..+|..+|..+..++|+.. .++-..+|.+++.+|+++++
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3666777788888888888755 77788888999999988753
No 19
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.21 E-value=56 Score=27.83 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=10.7
Q ss_pred HHHhHHHhHhhhhhH
Q 011782 197 FLKGVETWKKETITK 211 (477)
Q Consensus 197 ~~k~~~~~kke~~~~ 211 (477)
+-||+..|||..+.|
T Consensus 32 IeKGIa~YKKQqK~K 46 (103)
T PF11169_consen 32 IEKGIAEYKKQQKEK 46 (103)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888998865544
No 20
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=40.86 E-value=96 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011782 400 FPVPYALYFFALSIIAAFVGQHVLKKLIKILGR 432 (477)
Q Consensus 400 i~~~~al~l~~~a~iga~lG~~l~~kl~~~~~r 432 (477)
++.+......+.+++++.+|..+.+|+-+|+.+
T Consensus 153 ~~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 153 FTPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666677788889999999999999888765
No 21
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=40.77 E-value=3.4e+02 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=26.7
Q ss_pred cchhhHHHHh--hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011782 357 GGFILGPLFL--ELGIPPQVSSATALFAITFSSSMSVVEYYLLK 398 (477)
Q Consensus 357 GG~i~~Plll--~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G 398 (477)
++.+..|+.. .. +++++...--+...+.+...+.+|-+..+
T Consensus 20 ~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~ 62 (415)
T TIGR00801 20 GGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTG 62 (415)
T ss_pred HHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3577788875 45 78877666656666666666667655444
No 22
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.58 E-value=3.9e+02 Score=26.16 Aligned_cols=67 Identities=18% Similarity=0.391 Sum_probs=38.3
Q ss_pred hhhHHHH-hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 359 FILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 427 (477)
Q Consensus 359 ~i~~Pll-l~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~ 427 (477)
.+..+++ ..+|.+++...+. .--..|.-.+.-.--..|..+---+....+.+++|+.+|..+.+.+.
T Consensus 102 ~~s~~~la~~lg~~~~i~~Sl--~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~~ 169 (226)
T TIGR00659 102 IISGTLLALLLGLGPEIIASL--LPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYFR 169 (226)
T ss_pred HHHHHHHHHHHCcCHHHHHHh--hhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445666 4789987776532 22222221111111223445555566777778999999999887763
No 23
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=37.89 E-value=4.4e+02 Score=26.55 Aligned_cols=80 Identities=9% Similarity=-0.014 Sum_probs=44.4
Q ss_pred hhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh--cCc----chhHHHHHHHHHHHHHHHHHHHHHH
Q 011782 352 LLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLL--KRF----PVPYALYFFALSIIAAFVGQHVLKK 425 (477)
Q Consensus 352 llGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~--G~i----~~~~al~l~~~a~iga~lG~~l~~k 425 (477)
+=|+.=--......+.+|++.+.|.-=|-++..+.-..+.+--... ... ++...+.-++.+++.+++.-+...|
T Consensus 165 iPGiSRSG~TI~a~l~~G~~r~~Aa~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~~~g~i~afi~~~l~i~~ll~ 244 (276)
T PRK12554 165 IPGVSRSGATIIAGLLLGLTREAAARFSFLLAIPAVFGAGLLELYKIFHDPNASTLLGPTAVAFIVAFIVGYISIAWFMN 244 (276)
T ss_pred ccCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566677899988888888777776665444422211 111 2211223344455566666666666
Q ss_pred hHHHHH
Q 011782 426 LIKILG 431 (477)
Q Consensus 426 l~~~~~ 431 (477)
+.++..
T Consensus 245 ~~~~~~ 250 (276)
T PRK12554 245 FLKKGS 250 (276)
T ss_pred HHHhCC
Confidence 665543
No 24
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=36.63 E-value=3.3e+02 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011782 401 PVPYALYFFALSIIAAFVGQHVLKKLIKILGR 432 (477)
Q Consensus 401 ~~~~al~l~~~a~iga~lG~~l~~kl~~~~~r 432 (477)
+.+......+.+++++++|..+.+|+-+|+.+
T Consensus 157 ~~~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 157 SAIWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455667777888888899988888888764
No 25
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.15 E-value=1.7e+02 Score=21.11 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=6.4
Q ss_pred HHHhHHHhHhhhhhHH
Q 011782 197 FLKGVETWKKETITKR 212 (477)
Q Consensus 197 ~~k~~~~~kke~~~~~ 212 (477)
+++.++.-+..++.|+
T Consensus 25 IyQkikqIrgKkk~KK 40 (49)
T PF11044_consen 25 IYQKIKQIRGKKKEKK 40 (49)
T ss_pred HHHHHHHHHhhhhhHH
Confidence 3444444443333333
No 26
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=34.54 E-value=3.1e+02 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.1
Q ss_pred HHhhhhhHHHHHHHhhccC
Q 011782 449 LSLGGVGLAKMIKRIEHKE 467 (477)
Q Consensus 449 i~l~~~gi~~~i~~~~~~~ 467 (477)
.+++|+.+.|++.++..++
T Consensus 211 ~lvPG~~l~nav~dl~~g~ 229 (250)
T COG2966 211 LLVPGVPLTNAVRDLLSGH 229 (250)
T ss_pred HHcCchHHHHHHHHHHcCc
Confidence 4578888889999887765
No 27
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=33.52 E-value=2.4e+02 Score=26.91 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhch
Q 011782 150 IDYDLALLFQPLLVLGISIGVAFNVIFA 177 (477)
Q Consensus 150 id~~l~l~~~~~~~~G~~iGa~l~~~lp 177 (477)
--++..++-..+.++|..+|+.+...++
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3466666666777888888888776664
No 28
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=32.90 E-value=4.2e+02 Score=27.99 Aligned_cols=17 Identities=6% Similarity=-0.002 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhhc
Q 011782 160 PLLVLGISIGVAFNVIF 176 (477)
Q Consensus 160 ~~~~~G~~iGa~l~~~l 176 (477)
.+.++|..++..+....
T Consensus 380 lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHccccceeeeehhc
Confidence 44444444444444433
No 29
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.49 E-value=7.5e+02 Score=30.62 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=9.0
Q ss_pred HHHHHHHhhhcccc
Q 011782 344 ITAGMVGGLLGLGG 357 (477)
Q Consensus 344 ~~aG~isGllGiGG 357 (477)
.++.++-++||++.
T Consensus 70 ~LAD~L~~LFGl~A 83 (1355)
T PRK10263 70 WLADTLFFIFGVMA 83 (1355)
T ss_pred HHHHHHHHHHhHHH
Confidence 55667777787533
No 30
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=31.91 E-value=3.9e+02 Score=24.17 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhccccchhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHHH
Q 011782 341 ACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLK--RFPVPYALYFFALSIIAAFV 418 (477)
Q Consensus 341 l~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G--~i~~~~al~l~~~a~iga~l 418 (477)
.++.+.|.+.-.+++=.+.+++|+.... . ....| ..++|-......-.++|..+
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~-----------------------~-~~~~~~~~~~~P~~~~~~~qviiG~~i 60 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGA-----------------------V-LSLAGGLEITLPPWLLALAQVVIGILI 60 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHH-----------------------H-HHhcCCccCCCCHHHHHHHHHHHHHHH
Confidence 4556666666677777777777764311 1 11223 34556556666667788888
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 011782 419 GQHVLKKLIKILGRASIIIFT 439 (477)
Q Consensus 419 G~~l~~kl~~~~~r~~lii~l 439 (477)
|.++.+...+...|.....+.
T Consensus 61 G~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 61 GSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HccCCHHHHHHHHHHHHHHHH
Confidence 888777777776666554333
No 31
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=30.70 E-value=2.9e+02 Score=23.17 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011782 371 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 424 (477)
Q Consensus 371 ~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~ 424 (477)
.|++..|...+.....+.......+.....-.+.++.+.+.+++|+..-++...
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 83 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIE 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988888888887776666788889998889888877665543
No 32
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=29.86 E-value=78 Score=30.62 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=30.5
Q ss_pred ccCCCCCCCCchhhhhhccCCCCCccccccCchhHHHHHHHHHHHHHHHHHhhccCcccchhhHHHHHHH
Q 011782 40 TSKNKNDHVEPNIVIKVSAPKSRSGYKHVWPDIKFGWRIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNL 109 (477)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~w~~~~~~~~~~i~~~ig~l~g~i~~~~GiGGG~i~vP~L~~ 109 (477)
+.++.....|++|..+--+ -|--|... ++-|.++|+++ |+||+.++..++..
T Consensus 115 ~~DPITgd~Q~~YvtpGTe-------GHGiPtvs--------fvsGvIGg~lG---GiGG~LiY~al~~~ 166 (240)
T PRK00968 115 EKDPITGDRQDPYVTPGTE-------GHGIPTVS--------FVSGVIGGALG---GIGGALIYIALLEL 166 (240)
T ss_pred CcCCCCCCCcccccCCCCC-------CCCCceee--------eehhhhhhhhc---ccchHHHHHHHHHh
Confidence 3444445555566555422 23334332 23555555554 88999999999985
No 33
>TIGR01112 mtrD N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D. coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.84 E-value=72 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.797 Sum_probs=19.7
Q ss_pred HHHHHHHHhhccCcccchhhHHHHHHHHhCCCh
Q 011782 83 IIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDA 115 (477)
Q Consensus 83 ~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~ 115 (477)
+-|.++|+++ |+||+.++..++.. ++++
T Consensus 139 VsG~IGg~lG---GiGG~L~Y~al~~~--~~~~ 166 (223)
T TIGR01112 139 VSGIIGGALG---GIGGALVYYALIEV--GLSP 166 (223)
T ss_pred ehhhhhhhhc---ccchhHHHHHHHhc--ccCc
Confidence 3555565554 88999999999984 4543
No 34
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.79 E-value=5.4e+02 Score=25.12 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=10.6
Q ss_pred HHHHHHHhhccCCcCC
Q 011782 456 LAKMIKRIEHKEYMGF 471 (477)
Q Consensus 456 i~~~i~~~~~~~~m~f 471 (477)
..+.++++++.++..+
T Consensus 152 ~~K~~k~i~p~k~~~~ 167 (248)
T PF11368_consen 152 LRKTIKKIRPEKLPSF 167 (248)
T ss_pred HHHHHHHhCcccCCCC
Confidence 5678888877664443
No 35
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.74 E-value=2.8e+02 Score=26.42 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 159 QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (477)
Q Consensus 159 ~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k~~ 201 (477)
.++.++|..+|-.+++++.++ =+++-.+++.+.+.+|+++++
T Consensus 48 ~i~pliG~~~g~~~s~~i~~~-~~wigf~lL~~lG~~mI~e~f 89 (190)
T COG1971 48 AIMPLIGWFIGKFLSTFIAEW-AHWIGFVLLIILGLKMIIEGF 89 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666554443 566677788889999998875
No 36
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=29.57 E-value=1.3e+02 Score=23.52 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 011782 100 GGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNL 138 (477)
Q Consensus 100 G~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~ 138 (477)
=.+.+|++..++|.+..++-+.+........+-+..+|+
T Consensus 18 l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~ 56 (67)
T PF05232_consen 18 LLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNW 56 (67)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999998877777666666666665
No 37
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=29.38 E-value=5.6e+02 Score=25.18 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=37.2
Q ss_pred hhcCCChHHHHH------HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 366 LELGIPPQVSSA------TALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 427 (477)
Q Consensus 366 l~~Gi~p~vAsA------Ts~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~ 427 (477)
..+|.+++.... |+-++|-.+. -.|..|--.+....+.+++|+.+|..+.+++.
T Consensus 113 k~~g~~~~~~~Sl~PkSvTTpiAm~vs~--------~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 113 KLFGLSPELILSLLPKSVTTPIAMEVSE--------SIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHhCCCHHHHHHhcccccccHHHHHHHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888876533 3333333222 24677777788888889999999999888874
No 38
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=28.88 E-value=1.5e+02 Score=28.11 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHH-HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 011782 150 IDYDLALLFQPLL-VLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLK 199 (477)
Q Consensus 150 id~~l~l~~~~~~-~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~~k 199 (477)
.+.-.+-.+.-.. ++-+..+++...++|++.+.-+++++=++.++|...+
T Consensus 37 ~~I~~GQyLGs~~lilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~ 87 (205)
T COG4300 37 LHIYLGQYLGSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLIL 87 (205)
T ss_pred EEEeHHHHHhHHHHHHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhc
Confidence 4444444444333 4445667778889999999999999999999887655
No 39
>PF04207 MtrD: Tetrahydromethanopterin S-methyltransferase, subunit D ; InterPro: IPR005779 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=28.73 E-value=69 Score=30.65 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccCcccchhhHHHHHHHH
Q 011782 83 IIGFFGTACGSVGGVGGGGIFVPMLNLI 110 (477)
Q Consensus 83 ~ig~l~g~i~~~~GiGGG~i~vP~L~~~ 110 (477)
+-|.++|+++ |+||+.++..++...
T Consensus 139 vsG~IGg~lG---G~GG~LiY~aL~~~~ 163 (223)
T PF04207_consen 139 VSGVIGGALG---GIGGALIYYALYNVG 163 (223)
T ss_pred ehhhhhhhhc---ccchHHHHHHHHHhh
Confidence 3555555554 889999999999853
No 40
>COG2035 Predicted membrane protein [Function unknown]
Probab=27.79 E-value=6.5e+02 Score=25.43 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 011782 82 TIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLALLFQPL 161 (477)
Q Consensus 82 ~~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l~~~~~ 161 (477)
++-|++-|+-+.+=|+-||.+.. ++|.=- -+..++++...+. ..+ .||....++..|
T Consensus 8 ~~kG~~mG~AdivPGVSGGTiAl-----ilGIYe----------rlI~~i~~~~~~~-~~~-------~~~~fLi~l~~G 64 (276)
T COG2035 8 VFKGILMGAADIVPGVSGGTIAL-----ILGIYE----------RLIEAIAGIFKLD-EFK-------RNVLFLIPLGIG 64 (276)
T ss_pred HHHHHHHHHhhcCCCCchhHHHH-----HHHHHH----------HHHHHHhhhhhhh-hhh-------hhhHHHHHHHHH
Confidence 45667777778888999998753 122111 1122333333211 133 788888888888
Q ss_pred HHHHHHHHHHhhhhchH
Q 011782 162 LVLGISIGVAFNVIFAD 178 (477)
Q Consensus 162 ~~~G~~iGa~l~~~lp~ 178 (477)
.+.|...=+.+-+++=+
T Consensus 65 ~~~~i~~~a~ii~~ll~ 81 (276)
T COG2035 65 MLLGIFLFAKIIEYLLE 81 (276)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877777665533
No 41
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.32 E-value=3.8e+02 Score=22.26 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011782 371 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 424 (477)
Q Consensus 371 ~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~ 424 (477)
.|++..|...+.............+.....-.+.++.+...+++|+..-++...
T Consensus 32 ~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~ 85 (91)
T PRK12599 32 LPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLV 85 (91)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999888888887776666688888998888888877655443
No 42
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.16 E-value=3.4e+02 Score=33.42 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhhchHH
Q 011782 158 FQPLLVLGISIGVAFNVIFADW 179 (477)
Q Consensus 158 ~~~~~~~G~~iGa~l~~~lp~~ 179 (477)
+..|+++|..++..+..++...
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~v 161 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHSS 161 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhHH
Confidence 3578999999988888877653
No 43
>PRK01844 hypothetical protein; Provisional
Probab=25.80 E-value=1.8e+02 Score=23.29 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011782 408 FFALSIIAAFVGQHVLKKLIKILGRA 433 (477)
Q Consensus 408 l~~~a~iga~lG~~l~~kl~~~~~r~ 433 (477)
.+++.++|..+|-.++||..+++++.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777888888877664
No 44
>COG3619 Predicted membrane protein [Function unknown]
Probab=25.70 E-value=6.4e+02 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 011782 148 PVIDYDLALLFQPLLVLGISIGVAFNVIFADWMITVL 184 (477)
Q Consensus 148 p~id~~l~l~~~~~~~~G~~iGa~l~~~lp~~~l~~l 184 (477)
...||..-....++-+.|+..|+.+...+-++.+...
T Consensus 167 ~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~ 203 (226)
T COG3619 167 KLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVV 203 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3478888888889999999999999988877765543
No 45
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=25.52 E-value=3.7e+02 Score=22.21 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 011782 370 IPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 423 (477)
Q Consensus 370 i~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~ 423 (477)
-.|++..|...+.....+.......+.....-.+.++.+...+++|+..-++..
T Consensus 29 t~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~ 82 (89)
T PRK06161 29 RAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFL 82 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999888888887777776555667778888877777776655543
No 46
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=25.43 E-value=5.7e+02 Score=23.99 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhc----------cccchhhHHHHhhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHhcCcc
Q 011782 339 YCACGITAGMVGGLLG----------LGGGFILGPLFLELGIPPQVSSATALFAITFSS-SMSVVEYYLLKRFP 401 (477)
Q Consensus 339 ~~l~G~~aG~isGllG----------iGGG~i~~Plll~~Gi~p~vAsATs~~~~~fss-~~s~~~y~~~G~i~ 401 (477)
....|+.+|++=|+++ ++-++++-|...--=.+..--...+..++..-| .++.+-|.+++++.
T Consensus 23 ~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 23 VLEIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888877755 455667777664222222223333444444444 44555556677764
No 47
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=25.29 E-value=6.3e+02 Score=24.46 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=37.6
Q ss_pred hhhHHHH-hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 359 FILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 359 ~i~~Pll-l~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
.+..+++ ..+|+|++.+.+...=.+. +..+--+.- ..|..+---+....+.+++|+.+|..+.+++
T Consensus 92 ~~~~~~l~~~lgl~~~~~~Sl~pkSVT-tpiAi~is~-~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 92 IFSAVLLARLLGLSPEIILSLAPKSVT-TPIAIEISE-QIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhh-HHHHHHHHH-HhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 3344555 5789988766543221111 111111222 2345554556677777899999999888886
No 48
>PRK10720 uracil transporter; Provisional
Probab=25.20 E-value=6.1e+02 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=20.7
Q ss_pred chhhHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccc
Q 011782 358 GFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLK-RFP 401 (477)
Q Consensus 358 G~i~~Plll~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G-~i~ 401 (477)
+.+..|++. |+++++ ..+.+...+.+|.+..| |+|
T Consensus 30 ~~i~~Pli~--gl~~~~-------~l~~sGi~TliQ~~~~g~rlP 65 (428)
T PRK10720 30 ATVLVPILF--HINPAT-------VLLFNGIGTLLYLFICKGKIP 65 (428)
T ss_pred HHHHHHhhc--CCCHHH-------HHHHHHHHHHHHHHhccCccc
Confidence 567777765 777765 23555566666655443 443
No 49
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=24.88 E-value=9.6e+02 Score=26.45 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=30.6
Q ss_pred HHHHHhhccCcccchh-hHHHHHHHHhCCChhhhhHHHHHH
Q 011782 86 FFGTACGSVGGVGGGG-IFVPMLNLIVGFDAKSSAAVSKCM 125 (477)
Q Consensus 86 ~l~g~i~~~~GiGGG~-i~vP~L~~~~g~p~~~Av~ts~~~ 125 (477)
.+++++=++.|.|-.. +..|+|. -+|+||-.|+..++..
T Consensus 109 ~Fg~flEgaaGFGtpvAI~aplLv-~LGf~P~~Aa~l~Li~ 148 (522)
T PF02652_consen 109 GFGAFLEGAAGFGTPVAIAAPLLV-ALGFPPLQAAALCLIG 148 (522)
T ss_pred HHHHHHHhhhcccchHHHHHHHHH-HcCCChHHHHHHHHHH
Confidence 3456677777888886 5678888 5899999999998875
No 50
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.42 E-value=5.8e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 011782 177 ADWMITVLLIVLFLVL 192 (477)
Q Consensus 177 p~~~l~~l~~illl~~ 192 (477)
.+..+..++++.++..
T Consensus 77 KpTii~~l~a~~ll~s 92 (176)
T PF04279_consen 77 KPTIINWLFAAVLLGS 92 (176)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566667776666553
No 51
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=24.23 E-value=5.4e+02 Score=28.54 Aligned_cols=36 Identities=6% Similarity=0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 011782 156 LLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLV 191 (477)
Q Consensus 156 l~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~ 191 (477)
.......+=+.++.+-+.|....-++.++++.++..
T Consensus 389 ~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~ 424 (534)
T PF02705_consen 389 FFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFT 424 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 334455666778888888877777777777665554
No 52
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=55 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=20.3
Q ss_pred HHHHHHhhccCcccchhhHHHHHHHH
Q 011782 85 GFFGTACGSVGGVGGGGIFVPMLNLI 110 (477)
Q Consensus 85 g~l~g~i~~~~GiGGG~i~vP~L~~~ 110 (477)
||++|.+.+.+|+.||+++.=.|.-+
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~m 162 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEGM 162 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 78999999999999998765555543
No 53
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.64 E-value=4.1e+02 Score=21.75 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 011782 371 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 423 (477)
Q Consensus 371 ~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~ 423 (477)
.|++..|.........+.......+.....-.+.++.+...+++|+..-++..
T Consensus 28 ~~DRvvAlD~l~~~~v~~i~l~a~~~~~~~~ldvalvlAll~Fv~tva~Aryl 80 (84)
T PRK12604 28 TVDRLVAVDIMTTITTGLMVLFALYYKRMIFLDVALVYAILAFVGVIAFARYL 80 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999888888888777666668888888888888877665543
No 54
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=23.57 E-value=1e+03 Score=26.27 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=33.2
Q ss_pred HHHHHHHhhhccccch-hhHHHHhhcCCChHHHHHHHHHHHH
Q 011782 344 ITAGMVGGLLGLGGGF-ILGPLFLELGIPPQVSSATALFAIT 384 (477)
Q Consensus 344 ~~aG~isGllGiGGG~-i~~Plll~~Gi~p~vAsATs~~~~~ 384 (477)
.+++++=|.-|-|... +..|+|..+|.||-.|++.+.....
T Consensus 109 ~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n~ 150 (522)
T PF02652_consen 109 GFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGNS 150 (522)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3567888888888885 6677888999999999999887543
No 55
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.37 E-value=2.9e+02 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011782 407 YFFALSIIAAFVGQHVLKKLIKILGRA 433 (477)
Q Consensus 407 ~l~~~a~iga~lG~~l~~kl~~~~~r~ 433 (477)
...+.-++.+.+++|+..|.--+.+..
T Consensus 72 LiIvFllLTaPVaSHaIARAAyr~Gv~ 98 (197)
T PRK12585 72 LAVLFIFLTTPVASHLINRAAYDTGVP 98 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445778888888777765544433
No 56
>PTZ00370 STEVOR; Provisional
Probab=23.26 E-value=5.8e+02 Score=25.94 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhchH
Q 011782 163 VLGISIGVAFNVIFAD 178 (477)
Q Consensus 163 ~~G~~iGa~l~~~lp~ 178 (477)
+.|...|+..+.+.|=
T Consensus 242 lagtAAtaAsaaF~Py 257 (296)
T PTZ00370 242 LAGTAASAASSAFYPY 257 (296)
T ss_pred ccchHHHHHHHhhccc
Confidence 3455555555555553
No 57
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.24 E-value=5.4e+02 Score=22.94 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhhHHHHHHHHhCCChhhhhHHHHHHH
Q 011782 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMV 126 (477)
Q Consensus 77 ~~~i~~~ig~l~g~i~~~~GiGGG~i~vP~L~~~~g~p~~~Av~ts~~~i 126 (477)
.+..++.+|++.|++=. +|...+..-.+..++..+...|...+.+..
T Consensus 21 ~iA~g~AiG~fig~~P~---~g~~~~l~~~la~~~r~N~~aa~~~~~i~n 67 (154)
T PF09835_consen 21 SIALGFAIGVFIGFLPI---FGLQTVLAIALALLFRLNKPAAILGTWISN 67 (154)
T ss_pred HHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 45566777777775522 256777766677778888777777666654
No 58
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.16 E-value=4.5e+02 Score=22.30 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011782 371 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 424 (477)
Q Consensus 371 ~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~ 424 (477)
.|++..|-..+.....+.......+.....-.+.++.+...+++|+..-++...
T Consensus 34 ~~DRivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~ 87 (100)
T PRK12657 34 TADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIG 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988888888888877766666788888888888888887666543
No 59
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=22.94 E-value=4.3e+02 Score=21.70 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011782 370 IPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 424 (477)
Q Consensus 370 i~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~ 424 (477)
=.|++..|...+.............+.....-.+.++.+.+.+++|+..-++...
T Consensus 29 t~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~ 83 (87)
T PRK12612 29 DILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIIS 83 (87)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999988888888888777776666678888888888888776665543
No 60
>PRK10711 hypothetical protein; Provisional
Probab=22.79 E-value=7.3e+02 Score=24.34 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=35.7
Q ss_pred HHHH-hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 362 GPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 427 (477)
Q Consensus 362 ~Pll-l~~Gi~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~ 427 (477)
..++ ..+|.|++...+...=.+.--=.++. .. ..|..+---+....+.+++|+.+|..+.+.+.
T Consensus 106 ~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~i-s~-~iGG~~sLta~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 106 GTAVALWMGATPEIAASILPKSVTTPIAMAV-GG-SIGGIPAISAVCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred HHHHHHHHCcCHHHHHHHhhhhhhHHHHHHH-HH-HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444 47888877664432111110001111 11 23555555567777788999999998887764
No 61
>COG4280 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=5.5e+02 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=28.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHhHHHhHh
Q 011782 173 NVIFADWMITVLLIVLFLVLSTRAFLKGVETWKK 206 (477)
Q Consensus 173 ~~~lp~~~l~~l~~illl~~~~~~~~k~~~~~kk 206 (477)
...+|-..+++..+++++..+.|-.+|+++.+++
T Consensus 58 L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag 91 (236)
T COG4280 58 LYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAG 91 (236)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999998877664
No 62
>PRK00523 hypothetical protein; Provisional
Probab=22.67 E-value=2.1e+02 Score=22.93 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 011782 409 FALSIIAAFVGQHVLKKLIKILGR 432 (477)
Q Consensus 409 ~~~a~iga~lG~~l~~kl~~~~~r 432 (477)
++..++|...|-.++||..++.++
T Consensus 12 i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666677788888888776
No 63
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=22.58 E-value=6.4e+02 Score=23.58 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 011782 151 DYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLF 189 (477)
Q Consensus 151 d~~l~l~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~ill 189 (477)
++..-.....+-+.|+.+|+.+.++++.+.+-....+++
T Consensus 164 ~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~l~ 202 (209)
T PF06912_consen 164 RALRYLLIILSFFIGAILGALLYRRLGFWALLLPALLLL 202 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445556778899999999999988765554444333
No 64
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=22.50 E-value=3.9e+02 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHhCCChhhhhHH
Q 011782 100 GGIFVPMLNLIVGFDAKSSAAV 121 (477)
Q Consensus 100 G~i~vP~L~~~~g~p~~~Av~t 121 (477)
|.++-|+-- ++|+|-++|...
T Consensus 292 GyvfaP~Af-lmGvPw~eA~~a 312 (404)
T COG1972 292 GYVFAPLAF-LMGVPWSEALQA 312 (404)
T ss_pred HHHHHHHHH-HhCCcHHHHHHH
Confidence 566777766 478888877654
No 65
>COG2119 Predicted membrane protein [Function unknown]
Probab=21.97 E-value=3.5e+02 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 011782 150 IDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAF 197 (477)
Q Consensus 150 id~~l~l~~~~~~~~G~~iGa~l~~~lp~~~l~~l~~illl~~~~~~~ 197 (477)
+--....-...+-.+.+.+|......+|++...+..+...+..+.++.
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l 83 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWML 83 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHh
Confidence 444555666788889999999999999999999999998888876654
No 66
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=21.78 E-value=1.1e+03 Score=26.03 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHhhccCcccchhhH-HHHHHHHhCCChhhhhHHHHHHHH
Q 011782 83 IIGFFGTACGSVGGVGGGGIF-VPMLNLIVGFDAKSSAAVSKCMVT 127 (477)
Q Consensus 83 ~ig~l~g~i~~~~GiGGG~i~-vP~L~~~~g~p~~~Av~ts~~~i~ 127 (477)
+.-.+++++=++.|.|-.... .|+|. -+|+||-.|+..++....
T Consensus 112 I~~~Fg~flEg~aGFGtpvAI~aplLv-~LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 112 IGFCFGAFLEGAAGFGTPVAITAAILV-GLGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHhhccCCcHHHHHHHHH-HcCCChHHHHHHHHHHcC
Confidence 333456677777788877654 67776 689999999999988653
No 67
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=21.17 E-value=42 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.0
Q ss_pred CcccchhhHHHHHHH
Q 011782 95 GGVGGGGIFVPMLNL 109 (477)
Q Consensus 95 ~GiGGG~i~vP~L~~ 109 (477)
+++|++...+|+...
T Consensus 23 gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 23 GAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 367889999999874
No 68
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=20.24 E-value=5e+02 Score=21.44 Aligned_cols=53 Identities=2% Similarity=0.091 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 011782 371 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 423 (477)
Q Consensus 371 ~p~vAsATs~~~~~fss~~s~~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~ 423 (477)
.|++..|.........+.......+.....-.+.++.+...+++|+..-++..
T Consensus 31 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalv~All~Fv~tva~Ary~ 83 (87)
T PRK08381 31 LADRIVGLNTITTKVVGIIAILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYM 83 (87)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999888888888877666667888888888888877655543
Done!