Query 011782
Match_columns 477
No_of_seqs 313 out of 2089
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 17.4 4.1E+02 0.014 26.2 8.5 33 394-426 121-153 (340)
2 1pw4_A Glycerol-3-phosphate tr 15.7 7.2E+02 0.024 23.6 10.5 19 360-378 273-293 (451)
3 3llq_A Aquaporin Z 2; aquapori 13.5 2.6E+02 0.009 26.3 5.8 33 394-426 98-130 (256)
4 2o9g_A Aquaporin Z; integral m 12.2 3.1E+02 0.011 25.3 5.9 35 392-426 71-105 (234)
5 2zy9_A Mg2+ transporter MGTE; 12.2 9.5E+02 0.032 24.2 10.2 16 103-118 430-445 (473)
6 3gd8_A Aquaporin-4; proton exc 12.2 3.2E+02 0.011 25.0 5.9 33 394-426 73-105 (223)
7 1j4n_A Aquaporin 1; membrane p 11.9 3.2E+02 0.011 25.9 5.9 34 393-426 84-117 (271)
8 3d9s_A Aquaporin-5, AQP-5; aqu 11.9 3.2E+02 0.011 25.8 5.9 34 393-426 76-109 (266)
9 2w2e_A AQY1, aquaporin, aquapo 11.8 3.2E+02 0.011 26.1 5.9 35 392-426 117-151 (279)
10 1ldf_A Glycerol uptake facilit 11.5 4E+02 0.014 25.3 6.5 36 392-427 73-108 (281)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=17.40 E-value=4.1e+02 Score=26.24 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=27.8
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 394 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 394 y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
.++.|+++|..+...++.-++|+++|+.+++-+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456699999999999999999999999877654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=15.69 E-value=7.2e+02 Score=23.58 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=10.9
Q ss_pred hhHHHHh-h-cCCChHHHHHH
Q 011782 360 ILGPLFL-E-LGIPPQVSSAT 378 (477)
Q Consensus 360 i~~Plll-~-~Gi~p~vAsAT 378 (477)
...|.++ . .|+++..+...
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~ 293 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWA 293 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHH
Confidence 3455553 3 68887765443
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=13.50 E-value=2.6e+02 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 394 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 394 y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
.++.|+++|......++.-++|+++|+.+++-+
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999999999999887754
No 4
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=12.25 E-value=3.1e+02 Score=25.25 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 392 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 392 ~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
+..+..|+++|.......+.-++|+++|+.+++-+
T Consensus 71 la~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999887654
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=12.24 E-value=9.5e+02 Score=24.23 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=7.5
Q ss_pred HHHHHHHHhCCChhhh
Q 011782 103 FVPMLNLIVGFDAKSS 118 (477)
Q Consensus 103 ~vP~L~~~~g~p~~~A 118 (477)
++|++.-=+|+||..+
T Consensus 430 ~~p~~~~~~~~DPa~~ 445 (473)
T 2zy9_A 430 MLPFLLRRLGVDPALV 445 (473)
T ss_dssp THHHHHHHHTCCGGGS
T ss_pred HHHHHHHHcCCCcccc
Confidence 3444444445555443
No 6
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=12.22 E-value=3.2e+02 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 394 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 394 y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
.+..|+++|.......+.-++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999887654
No 7
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=11.89 E-value=3.2e+02 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 393 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 393 ~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
..++.|+++|......++.-++|+++|+.+++-+
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999888754
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=11.87 E-value=3.2e+02 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=29.2
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 393 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 393 ~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
..++.|+++|......++.-++|+++|+.+++-+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999999999999999887765
No 9
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=11.79 E-value=3.2e+02 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=28.6
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011782 392 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 426 (477)
Q Consensus 392 ~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl 426 (477)
+..++.|+++|..+...++.-++|+++|+.+++-+
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999877654
No 10
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=11.54 E-value=4e+02 Score=25.30 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 011782 392 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 427 (477)
Q Consensus 392 ~~y~~~G~i~~~~al~l~~~a~iga~lG~~l~~kl~ 427 (477)
+..++.|+++|......++.-++|+++|+.+++-+-
T Consensus 73 la~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~ 108 (281)
T 1ldf_A 73 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLY 108 (281)
T ss_dssp HHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677999999999999999999999998876554
Done!