Query 011786
Match_columns 477
No_of_seqs 151 out of 180
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ell_A Retinoblastoma-associat 100.0 3E-116 1E-120 910.7 24.2 373 35-477 1-385 (411)
2 2r7g_A PP110, retinoblastoma-a 100.0 5E-107 2E-111 827.8 25.2 311 38-477 1-321 (347)
3 4elj_A Retinoblastoma-associat 100.0 1E-105 5E-110 869.3 30.5 325 26-477 296-630 (656)
4 1ais_B TFB TFIIB, protein (tra 97.3 0.00059 2E-08 63.5 8.5 71 364-436 10-80 (200)
5 4bbr_M Transcription initiatio 97.3 0.00054 1.8E-08 69.9 8.7 71 364-436 127-197 (345)
6 1c9b_A General transcription f 97.3 0.00062 2.1E-08 63.7 8.5 72 363-436 5-76 (207)
7 3k7a_M Transcription initiatio 96.6 0.0014 4.7E-08 66.7 4.3 71 363-435 126-196 (345)
8 1ais_B TFB TFIIB, protein (tra 95.7 0.033 1.1E-06 51.5 8.6 64 370-435 112-175 (200)
9 1c9b_A General transcription f 94.9 0.087 3E-06 49.0 8.7 59 371-431 107-165 (207)
10 1zp2_A RNA polymerase II holoe 93.8 0.27 9.4E-06 46.6 9.9 72 364-437 29-101 (235)
11 2qdj_A Retinoblastoma-associat 93.0 0.15 5E-06 51.2 6.7 66 368-435 4-73 (304)
12 2i53_A Cyclin K; cell cycle, t 92.6 0.55 1.9E-05 44.9 9.9 69 365-435 43-111 (258)
13 4elj_A Retinoblastoma-associat 92.2 0.3 1E-05 53.6 8.3 69 368-436 6-76 (656)
14 2ivx_A Cyclin-T2; transcriptio 91.8 0.78 2.7E-05 43.9 9.9 69 366-436 34-102 (257)
15 3rgf_B Cyclin-C; protein kinas 91.3 1.1 3.9E-05 43.8 10.7 75 360-436 40-115 (285)
16 1jkw_A Cyclin H; cell cycle, c 91.2 0.63 2.1E-05 46.6 8.9 67 366-434 60-128 (323)
17 2pk2_A Cyclin-T1, protein TAT; 88.9 0.99 3.4E-05 45.9 8.2 69 365-435 40-108 (358)
18 2b9r_A Human cyclin B1; cell c 78.6 5 0.00017 38.7 7.7 64 369-434 44-108 (269)
19 2cch_B Cyclin A2, cyclin-A; co 68.1 10 0.00035 36.2 7.0 67 366-434 42-109 (260)
20 3k7a_M Transcription initiatio 66.5 1.2 4.1E-05 44.9 0.0 63 370-434 239-301 (345)
21 2w96_A G1/S-specific cyclin-D1 62.8 17 0.00058 34.8 7.5 62 370-433 64-126 (271)
22 1zp2_A RNA polymerase II holoe 62.0 13 0.00045 34.7 6.4 47 376-424 144-190 (235)
23 2pk2_A Cyclin-T1, protein TAT; 59.4 10 0.00035 38.3 5.4 49 374-423 161-209 (358)
24 4bbr_M Transcription initiatio 57.6 2.2 7.4E-05 43.2 0.0 62 373-436 242-303 (345)
25 1w98_B Cyclin E, G1/S-specific 57.4 25 0.00085 34.0 7.6 63 370-433 57-120 (283)
26 1g3n_C V-cyclin; cyclin-depend 53.8 21 0.00072 33.9 6.3 67 366-434 54-121 (257)
27 2ivx_A Cyclin-T2; transcriptio 53.1 29 0.00098 32.8 7.1 51 374-425 154-204 (257)
28 3rgf_B Cyclin-C; protein kinas 52.9 24 0.00081 34.2 6.6 50 373-424 164-213 (285)
29 2i53_A Cyclin K; cell cycle, t 50.5 42 0.0014 31.5 7.8 51 373-425 158-212 (258)
30 3m03_A ORC6, origin recognitio 44.3 28 0.00095 29.0 4.7 60 370-433 6-71 (95)
31 2f2c_A Cyclin homolog, V-cycli 42.1 46 0.0016 31.4 6.6 64 367-432 56-120 (254)
32 2qdj_A Retinoblastoma-associat 40.3 98 0.0034 30.7 8.8 88 112-217 17-104 (304)
33 3g33_B CCND3 protein; Ser/Thr 33.2 77 0.0026 31.0 6.8 67 365-433 73-140 (306)
34 4gdk_C APG16-like 1, autophagy 29.3 6.5 0.00022 27.2 -1.2 13 464-476 24-36 (36)
35 2cch_B Cyclin A2, cyclin-A; co 22.1 1.7E+02 0.0058 27.5 6.8 64 373-437 146-221 (260)
No 1
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=100.00 E-value=3.4e-116 Score=910.68 Aligned_cols=373 Identities=25% Similarity=0.421 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHhhhcccccccccccccccccccccchhhHHHH
Q 011786 35 TAQNTASNWLKTVIAPLPSKPSAELEKFLSLGSVSIANEVESGANIVLEAIFPSIKLGERLFNWSLLNVNLMDSLWSGQE 114 (477)
Q Consensus 35 ~A~~s~~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~i~~rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~~R 114 (477)
.||+|+ +|||++|+|++++||++|++||++|++||+++|.+||++|++.|.+.+ ++. .|. ...| ++++|
T Consensus 1 ~~~~s~-~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~I~~rv~~l~~~F~~~~--~~~---~~~---~~~~--~a~~R 69 (411)
T 4ell_A 1 GEFNTI-QQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKF--AKA---VGQ---GCVE--IGSQR 69 (411)
T ss_dssp -------CHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH--HHH---HCC---C--C--HHHHH
T ss_pred CcchHH-HHHHHHhcCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHh--hcc---cCc---cchh--HHHHH
Confidence 489999 999999999999999999999999999999999999999887666443 321 111 1234 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCchhhhccchHHHHHHHHHHHHHHHHHhcC---------CCcchhHHHHhhCCCc
Q 011786 115 RTEALKLYYKVLESICASEAGKSSSRDLSGLLTNEKFHRCMLACSAELVSMARTR---------VSILFPLILERAGITA 185 (477)
Q Consensus 115 ~~~a~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~~y~~---------~~~~FPwiL~~~~i~a 185 (477)
+++|++||||+||+||.+|.+|++..|++.||+||.||+||+|||+|||+|+|++ .++.|||||++|+|+|
T Consensus 70 ~~la~~LYY~~LE~Il~~E~~rl~~~~~s~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~a 149 (411)
T 4ell_A 70 YKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKA 149 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------CCTTHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhhHHHHHHHHHHHHHHHHHHhccccccccccccCcCChHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999999986 3689999999999999
Q ss_pred eehhhhhhHhhhcCCCCCHHHHHHHHHHHHHHHhhhhccCCCcchHHHHhcCCChHHHHHHhhhhcCCCCchhhhhcccc
Q 011786 186 FDMCKVTESFIRHEDSLPRELMRHLNSLEETMLESMVWEKGSSLYNSLIASRPDLQEEIKRLKLLAEPMPSLHEISMNNH 265 (477)
Q Consensus 186 fdf~KVIE~fIR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~L~~~L~~a~~~~~~ei~r~g~~~~~~Ps~~~v~~~~~ 265 (477)
||||||||+|||||++||||||||||+|||+|||||||++|||||++|+.++ +.+|.++++..+..
T Consensus 150 fdf~KVIE~fvr~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~Lw~~l~~~~--------------~~~~~~~~~~~~~~ 215 (411)
T 4ell_A 150 FDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESFAWLSDSPLFDLIKQSK--------------DREGPTDHLESACP 215 (411)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCHHHHHHHHC-----------------------------
T ss_pred hhhhhhhHHhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhcc--------------ccCCcccccCCccc
Confidence 9999999999999999999999999999999999999999999999998653 12344444332221
Q ss_pred ccCCcccccccccCCCCCCCCCCCccccccCCCccccccccccccccCCCccccccccCCCCCCCccccccCCCCC-CCC
Q 011786 266 LASGVLAYQHNLHKHKPSTGNNGMKRLCDENGSKLTKHNSYATAMKVDSPVVDSHQVKLQPVTPSSQTAFMSPVQS-KTP 344 (477)
Q Consensus 266 ~~~~~~p~~p~~~~~~~sp~~~~~kr~~~~~~~~~~~~~s~~~p~~~~sp~k~~~~~~~~~~~~~~qs~~~sp~~~-~~p 344 (477)
+. .|..+ ..++.+.+ .+|++++. .+... ..++++++|..+ ..|
T Consensus 216 ~~---~p~~~---------------------~~t~~~~~--------~SP~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 259 (411)
T 4ell_A 216 LN---LPLQN---------------------NHTAADMY--------LEPVRAPK---KKGST-TRVNSTANAETQATSA 259 (411)
T ss_dssp --------------------------------CCHHHHH--------HCCC-----------------------------
T ss_pred cc---ccccC---------------------Cccchhcc--------cCCCCccc---ccccC-CccccccCccccCCCC
Confidence 10 11110 00011111 23333221 01100 012222333211 112
Q ss_pred CCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhc
Q 011786 345 KDGGIK-MDAAVTFLFNKMTKLGAVRINSMAERLKLSQ-QIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKIN 422 (477)
Q Consensus 345 ~~~~~~-~~~sl~lFfrKvy~LAa~RL~~LC~~L~ls~-~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~ 422 (477)
.+++++ +.+++++||||||+||++||++||++|++++ +++++|||||||+|+|+|+||+||||||||||||||||||+
T Consensus 260 ~~~~~~~~~~sl~lFfrKvy~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~ 339 (411)
T 4ell_A 260 FQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVK 339 (411)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhc
Confidence 223333 6679999999999999999999999999875 79999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHhcCCCCCCcceeeEEeccccccCCCccccccccccccccccC
Q 011786 423 KLKLKFEEITDNYVKEPQCRSQDFGFVFAGWLSKHKGKNRENYKSIDAFYNKYSF 477 (477)
Q Consensus 423 k~~~tFk~Ii~~Yr~QPqa~~~Vyr~Vli~~~~~~~g~~~~e~~DII~FYN~VFv 477 (477)
+.+++|++||++||+||||+++|||+|+|+ ++++||||+|||+|||
T Consensus 340 ~~~~tFk~Ii~~Yr~qPqa~~~vyr~Vli~---------~g~~gDII~FYN~Vfv 385 (411)
T 4ell_A 340 NIDLKFKIIVTAYKDLPHAVQETFKRVLIK---------EEEYDSIIVFYNSVFM 385 (411)
T ss_dssp TCCCCHHHHHHHHTTSTTCCTHHHHSEECS---------SSCEECHHHHHHHTHH
T ss_pred cCCCCHHHHHHHHHhCcCCCCceeEEEEeC---------CCCcccHHHHHHHHHH
Confidence 999999999999999999999999999993 2468999999999996
No 2
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=100.00 E-value=5.2e-107 Score=827.78 Aligned_cols=311 Identities=28% Similarity=0.499 Sum_probs=281.1
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHhhhcccccccccccccccccccccchhhHHHHHHH
Q 011786 38 NTASNWLKTVIAPLPSKPSAELEKFLSLGSVSIANEVESGANIVLEAIFPSIKLGERLFNWSLLNVNLMDSLWSGQERTE 117 (477)
Q Consensus 38 ~s~~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~i~~rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~~R~~~ 117 (477)
+|+ +|||++|+|++++||++|++||++|++||+++|.+||++|++.|... +++. .|.. ..| ++++|+.+
T Consensus 1 ~~~-~~L~~~~~~~~~~Ps~~L~~~~~~C~~~p~~~i~~rv~~l~~~f~~~--~~~~---~~~~---~~~--~~~~R~~~ 69 (347)
T 2r7g_A 1 NTI-QQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEK--FAKA---VGQG---CVE--IGSQRYKL 69 (347)
T ss_dssp CCH-HHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH--HHHH---HCGG---GHH--HHHHHHHH
T ss_pred ChH-HHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH--Hhhc---cCcc---cch--HHHHHHHH
Confidence 367 99999999999999999999999999999999999999977665443 2321 1111 123 79999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchhhhccchHHHHHHHHHHHHHHHHHhcC---------CCcchhHHHHhhCCCceeh
Q 011786 118 ALKLYYKVLESICASEAGKSSSRDLSGLLTNEKFHRCMLACSAELVSMARTR---------VSILFPLILERAGITAFDM 188 (477)
Q Consensus 118 a~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~~y~~---------~~~~FPwiL~~~~i~afdf 188 (477)
|++|||++||+||.+|.+|+++.|++.||+||+||+||||||+|+|+++|++ .++.|||||++|||+||||
T Consensus 70 a~~LYY~vLe~Il~~E~~r~~~~~~s~LL~~~~Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf 149 (347)
T 2r7g_A 70 GVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDF 149 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHhchHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHH
Confidence 9999999999999999999999999999999999999999999999999963 2689999999999999999
Q ss_pred hhhhhHhhhcCCCCCHHHHHHHHHHHHHHHhhhhccCCCcchHHHHhcCCChHHHHHHhhhhcCCCCchhhhhccccccC
Q 011786 189 CKVTESFIRHEDSLPRELMRHLNSLEETMLESMVWEKGSSLYNSLIASRPDLQEEIKRLKLLAEPMPSLHEISMNNHLAS 268 (477)
Q Consensus 189 ~KVIE~fIR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~L~~~L~~a~~~~~~ei~r~g~~~~~~Ps~~~v~~~~~~~~ 268 (477)
|||||+|||||++|||||+||||+|||+|||+|||++|||||+.|.++++
T Consensus 150 ~KVIE~fVr~e~~LprelvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~------------------------------ 199 (347)
T 2r7g_A 150 YKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKD------------------------------ 199 (347)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccc------------------------------
Confidence 99999999999999999999999999999999999999999998863210
Q ss_pred CcccccccccCCCCCCCCCCCccccccCCCccccccccccccccCCCccccccccCCCCCCCccccccCCCCCCCCCCCC
Q 011786 269 GVLAYQHNLHKHKPSTGNNGMKRLCDENGSKLTKHNSYATAMKVDSPVVDSHQVKLQPVTPSSQTAFMSPVQSKTPKDGG 348 (477)
Q Consensus 269 ~~~p~~p~~~~~~~sp~~~~~kr~~~~~~~~~~~~~s~~~p~~~~sp~k~~~~~~~~~~~~~~qs~~~sp~~~~~p~~~~ 348 (477)
+ ++
T Consensus 200 ----------------------------------~----------------------------------------~g--- 202 (347)
T 2r7g_A 200 ----------------------------------R----------------------------------------EG--- 202 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------c----------------------------------------CC---
Confidence 0 00
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcC
Q 011786 349 IKMDAAVTFLFNKMTKLGAVRINSMAERLKLSQ-QIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLK 427 (477)
Q Consensus 349 ~~~~~sl~lFfrKvy~LAa~RL~~LC~~L~ls~-~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~t 427 (477)
+.+++++||||||+||++||++||++|++++ +++++|||+|||+|.|+|+||+|||||||||||||++|||++.++|
T Consensus 203 --~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~t 280 (347)
T 2r7g_A 203 --KSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLK 280 (347)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCC
Confidence 1248999999999999999999999998775 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcceeeEEeccccccCCCccccccccccccccccC
Q 011786 428 FEEITDNYVKEPQCRSQDFGFVFAGWLSKHKGKNRENYKSIDAFYNKYSF 477 (477)
Q Consensus 428 Fk~Ii~~Yr~QPqa~~~Vyr~Vli~~~~~~~g~~~~e~~DII~FYN~VFv 477 (477)
|++||++||+|||++++|||+|+|+ ++++||||+|||+|||
T Consensus 281 F~~Ii~~Yr~qpq~~~~vyr~V~i~---------~~~~gDII~FYN~vfv 321 (347)
T 2r7g_A 281 FKIIVTAYKDLPHAVQETFKRVLIK---------EEEYDSIIVFYNSVFM 321 (347)
T ss_dssp HHHHHHHHTTSTTCCTHHHHSEECS---------SSCEECHHHHHHHTHH
T ss_pred HHHHHHHHHhcccccchheeeeecc---------CCCcCchHHhhhHHHH
Confidence 9999999999999999999999993 3579999999999996
No 3
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-105 Score=869.30 Aligned_cols=325 Identities=29% Similarity=0.510 Sum_probs=291.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhCCCChHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 011786 26 AKMTPTPVRTAQNTASNWLKTVIAPLPSKPSAELEKFLSLGSVSIANEVESGANIVLEAIFPSIKLGERLFNWSLLNVNL 105 (477)
Q Consensus 26 ~~~~~TPVs~A~~s~~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~i~~rv~~i~e~~f~~~~~~~~~~~~~~~~~~~ 105 (477)
..+++||||+||+++ +||+++|+|++++||++|++||++|++||+++|.+||++|++.|.+.+ ++. . | ...
T Consensus 296 ~~p~~TPVs~A~~si-~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~I~~rv~~l~~~F~~~~--~~~--~-g---~~~ 366 (656)
T 4elj_A 296 VIPPHTPVRTVMNTI-QQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKF--AKA--V-G---QGC 366 (656)
T ss_dssp ---CCCHHHHHHHHH-HHHHHHTTTCCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH--HHH--H-C---GGG
T ss_pred CCCCCCchHHHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh--ccc--c-C---Ccc
Confidence 467789999999999 999999999999999999999999999999999999999877665443 221 1 1 112
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhhccchHHHHHHHHHHHHHHHHHhcC---------CCcchhH
Q 011786 106 MDSLWSGQERTEALKLYYKVLESICASEAGKSSSRDLSGLLTNEKFHRCMLACSAELVSMARTR---------VSILFPL 176 (477)
Q Consensus 106 ~d~~~a~~R~~~a~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~~y~~---------~~~~FPw 176 (477)
.| +++||+++|++||||+||+||.+|.+|++..|++.||+|+.||+||+|||+|||+|+|++ .++.|||
T Consensus 367 ~~--~a~~R~~la~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPw 444 (656)
T 4elj_A 367 VE--IGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPW 444 (656)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHCHHHHHHHHHHHHHHHHHHHSCCCC----CCCSSSTTH
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhhhHHHHHHHHHHHHHHHHHhccccccccccccccCCcH
Confidence 24 789999999999999999999999999999999999999999999999999999999987 3589999
Q ss_pred HHHhhCCCceehhhhhhHhhhcCCCCCHHHHHHHHHHHHHHHhhhhccCCCcchHHHHhcCCChHHHHHHhhhhcCCCCc
Q 011786 177 ILERAGITAFDMCKVTESFIRHEDSLPRELMRHLNSLEETMLESMVWEKGSSLYNSLIASRPDLQEEIKRLKLLAEPMPS 256 (477)
Q Consensus 177 iL~~~~i~afdf~KVIE~fIR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~L~~~L~~a~~~~~~ei~r~g~~~~~~Ps 256 (477)
||++|+|+|||||||||+|||||++||||||||||+|||||||||||++|||||+.|+++++
T Consensus 445 iL~~~~i~afdf~KVIE~fvr~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~L~~~l~~~~~------------------ 506 (656)
T 4elj_A 445 ILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKD------------------ 506 (656)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSSSCTHHHHHHTTSC------------------
T ss_pred HHHhcCCcHHHHHhhhhhheeccCCCCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHhccc------------------
Confidence 99999999999999999999999999999999999999999999999999999998863210
Q ss_pred hhhhhccccccCCcccccccccCCCCCCCCCCCccccccCCCccccccccccccccCCCccccccccCCCCCCCcccccc
Q 011786 257 LHEISMNNHLASGVLAYQHNLHKHKPSTGNNGMKRLCDENGSKLTKHNSYATAMKVDSPVVDSHQVKLQPVTPSSQTAFM 336 (477)
Q Consensus 257 ~~~v~~~~~~~~~~~p~~p~~~~~~~sp~~~~~kr~~~~~~~~~~~~~s~~~p~~~~sp~k~~~~~~~~~~~~~~qs~~~ 336 (477)
..|
T Consensus 507 -----------------------------~~g------------------------------------------------ 509 (656)
T 4elj_A 507 -----------------------------REG------------------------------------------------ 509 (656)
T ss_dssp -----------------------------C--------------------------------------------------
T ss_pred -----------------------------ccc------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHH
Q 011786 337 SPVQSKTPKDGGIKMDAAVTFLFNKMTKLGAVRINSMAERLKLS-QQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCF 415 (477)
Q Consensus 337 sp~~~~~p~~~~~~~~~sl~lFfrKvy~LAa~RL~~LC~~L~ls-~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCai 415 (477)
+ .+.+++++||||||+||++||++||++|+++ ++++++|||+|||+|.|+|+||+||||||||||||
T Consensus 510 -------~-----~~s~sl~iffrKvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsi 577 (656)
T 4elj_A 510 -------P-----LKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSM 577 (656)
T ss_dssp --------------CCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHH
T ss_pred -------C-----ccccHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHH
Confidence 0 0123799999999999999999999999877 47999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcCHHHHHHHHhcCCCCCCcceeeEEeccccccCCCccccccccccccccccC
Q 011786 416 CGVAKINKLKLKFEEITDNYVKEPQCRSQDFGFVFAGWLSKHKGKNRENYKSIDAFYNKYSF 477 (477)
Q Consensus 416 Y~icKv~k~~~tFk~Ii~~Yr~QPqa~~~Vyr~Vli~~~~~~~g~~~~e~~DII~FYN~VFv 477 (477)
|++|||++.+++|++||++||+|||++++|||+|+|+ ++++||||+|||+|||
T Consensus 578 Y~icKv~~~~ltFk~Ii~~Yr~qpq~~~~vyr~V~i~---------~g~~~DII~FYN~Vfv 630 (656)
T 4elj_A 578 YGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK---------EEEYDSIIVFYNSVFM 630 (656)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHTSTTCCTHHHHSEEEE---------TTEEECHHHHHHHTHH
T ss_pred HHHHHhccCCcCHHHHHHHHHhCCCCCCceeEEEEec---------CCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999993 2368899999999996
No 4
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.31 E-value=0.00059 Score=63.48 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 364 KLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 364 ~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
.-|...|+++|.+|+|++.+.+..-.+|+.++.+ .++++|-.+.+...|+|..||..+...+++||.+..+
T Consensus 10 ~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~--~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~ 80 (200)
T 1ais_B 10 AFALSELDRITAQLKLPRHVEEEAARLYREAVRK--GLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR 80 (200)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--TTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC
Confidence 4488899999999999999999999999988765 6789999999999999999999999999999987764
No 5
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=97.30 E-value=0.00054 Score=69.90 Aligned_cols=71 Identities=8% Similarity=0.118 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 364 KLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 364 ~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
.-|...|+++|.+|+|++.+.+....+|..+.. -.++++|..+.|+.+|+|+.||..+..++|+||....+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~--~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~ 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHD--EKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT--CTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC
Confidence 458889999999999999999999999987765 37899999999999999999999999999999988765
No 6
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.29 E-value=0.00062 Score=63.74 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 363 TKLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 363 y~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
+.-|...|+++|.+|+|++.+....-..|+..+.+ ..+++|+++.+...|+|..||+.+...+++||...++
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~--~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~ 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQ--KSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--TCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC
Confidence 34588899999999999999888888888877655 4679999999999999999999999999999987654
No 7
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0014 Score=66.71 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 011786 363 TKLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNY 435 (477)
Q Consensus 363 y~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Y 435 (477)
+.-|...|+++|.+|+|++.+.+..-.+|+.++.+ .++++|-++.|+.+|+|+.||..+...+|+||....
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~--~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~ 196 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDE--KTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSS--CSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 45688999999999999999999898999887554 688999999999999999999999999999876654
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.68 E-value=0.033 Score=51.53 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=55.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 011786 370 INSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNY 435 (477)
Q Consensus 370 L~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Y 435 (477)
|..+|.+|++++++.+..|.+++.+.. .+++.+|....|.-.|+|..|++.+..++.++|-..-
T Consensus 112 i~r~~~~L~l~~~v~~~A~~i~~~~~~--~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~ 175 (200)
T 1ais_B 112 VNKFADELGLSEKVRRRAIEILDEAYK--RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA 175 (200)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHH--TTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH--cCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 345788899999999999999998875 5789999999999999999999999888888886653
No 9
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.85 E-value=0.087 Score=48.96 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHH
Q 011786 371 NSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEI 431 (477)
Q Consensus 371 ~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~I 431 (477)
..+|..|++++++++..|.+++.++. ++++.+|.--+|-..|||..|++.+.+.+-++|
T Consensus 107 ~r~~~~l~l~~~~~~~A~~i~~~~~~--~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i 165 (207)
T 1c9b_A 107 SRFCSNLCLPKQVQMAATHIARKAVE--LDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 165 (207)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHH--TTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHH--cCccCCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35678899999999999999999875 789999999999999999999999876666554
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.83 E-value=0.27 Score=46.56 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhcccc-CchhHHHHHHHHHHHHhcCCCcCHHHHHHHHhc
Q 011786 364 KLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFN-RHIDLIILCCFCGVAKINKLKLKFEEITDNYVK 437 (477)
Q Consensus 364 ~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~d-RHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr~ 437 (477)
..+..-|.++|.+|+++++.....-..|+..+..+ .+++ +++.-+.+.|+|.-||+.....+.+||+...++
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~--~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKK--NEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEAND 101 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--CSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--ccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 34667899999999999988777777787666543 4666 999999999999999999988999999987654
No 11
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=93.03 E-value=0.15 Score=51.21 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhh-h--hhccccCchhHHHHHHHHHHHHhcC-CCcCHHHHHHHH
Q 011786 368 VRINSMAERLKLSQQIREKTYLLFRQILVE-K--TYLFFNRHIDLIILCCFCGVAKINK-LKLKFEEITDNY 435 (477)
Q Consensus 368 ~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~-~--t~Lm~dRHLDQiiLCaiY~icKv~k-~~~tFk~Ii~~Y 435 (477)
.|..+||+.|++++.+.++.|..|+.+-.. . ..+.- --....+||+|+.|...+ .-+|+.+|.++-
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~--~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQ--KKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCcc--chHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 588999999999999999999999996543 1 01111 133457888999997544 348888876653
No 12
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.58 E-value=0.55 Score=44.86 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 011786 365 LGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNY 435 (477)
Q Consensus 365 LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Y 435 (477)
.+..-|.++|.+|+++++.....-..|+..+..+ .++++++.-+.++|+|+-||+.....+.++|+...
T Consensus 43 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~--~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~ 111 (258)
T 2i53_A 43 EGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFH--SFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS--CTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--ChhhcCHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 4567899999999999988777777788766544 47789998889999999999999888999998754
No 13
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=92.16 E-value=0.3 Score=53.63 Aligned_cols=69 Identities=17% Similarity=0.419 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccc--cCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 368 VRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFF--NRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 368 ~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~--dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
.|..+||..|++++...++.|..|+.+-.+...|.+ +---.+.+-|++|+.|++...-+|+.+|.++-+
T Consensus 6 ~~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 6 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhc
Confidence 588999999999999999999999999743333321 123346788888888888877799998887643
No 14
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=91.75 E-value=0.78 Score=43.85 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 366 GAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 366 Aa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
+..-|.++|.+|+++++.....-..|+..+..+ .++++|+--+.++|+|.-||+.....+.+||+..++
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~--~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHH--SFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS--CTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhC--ChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 667799999999999988777777777666543 578899999999999999999998899999987664
No 15
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=91.30 E-value=1.1 Score=43.76 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCc-CHHHHHHHHh
Q 011786 360 NKMTKLGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKL-KFEEITDNYV 436 (477)
Q Consensus 360 rKvy~LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~-tFk~Ii~~Yr 436 (477)
+|+-..+..=|.++|.+|+|+++.....=..|+..+.. ..++++|+.-|.+.|+|.-||+..... ++++|+..++
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYAR--YSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--SCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--CCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 44445567779999999999998776666777766543 457889999999999999999988765 8999988764
No 16
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=91.21 E-value=0.63 Score=46.57 Aligned_cols=67 Identities=13% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 011786 366 GAVRINSMAERLK--LSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDN 434 (477)
Q Consensus 366 Aa~RL~~LC~~L~--ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~ 434 (477)
+..-|.++|.+|+ +++++..-.-..|+..+.. ..++++|+--|.++|+|.-||+....++.++|+..
T Consensus 60 ~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~ 128 (323)
T 1jkw_A 60 YEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLN--NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN 128 (323)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGG--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhh--CChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Confidence 3456889999999 9998877777777766654 35788999999999999999999988898888753
No 17
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=88.91 E-value=0.99 Score=45.89 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 011786 365 LGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNY 435 (477)
Q Consensus 365 LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Y 435 (477)
.+..-|.++|.+|+|+++.....-..|+..+..+ .++++|+--|.++|+|+-||+.....+.+||+..+
T Consensus 40 ~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~--sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ--SFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTS--CTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 3677799999999999988777777787666543 57889999999999999999999889999998654
No 18
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=78.57 E-value=5 Score=38.67 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHHH
Q 011786 369 RINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITDN 434 (477)
Q Consensus 369 RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~~ 434 (477)
=|.++|.+++++++.....-..|+..+.... +..+++.-+.+.|+|+-||+... ..+++|+...
T Consensus 44 wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~ 108 (269)
T 2b9r_A 44 WLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV 108 (269)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH
Confidence 3889999999999887777888887776553 67889999999999999999776 5788888754
No 19
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=68.07 E-value=10 Score=36.19 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHHH
Q 011786 366 GAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITDN 434 (477)
Q Consensus 366 Aa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~~ 434 (477)
+..=|.++|.+++++++.....-..|+..+.... +..+++.-+.+.|+|+-||+... ..+.+|+..-
T Consensus 42 lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i 109 (260)
T 2cch_B 42 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI 109 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC--CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 3444778999999999987777788887776542 56788999999999999999887 6789998753
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=66.50 E-value=1.2 Score=44.93 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 011786 370 INSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDN 434 (477)
Q Consensus 370 L~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~ 434 (477)
|..+|.+|++++++.+..|.+++.+.. ++|+-+|.---|-..|||..|++.+..++=++|-+.
T Consensus 239 i~Rf~~~L~l~~~v~~~A~~i~~~~~~--~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~ 301 (345)
T 3k7a_M 239 IPRFCSHLGLPMQVTTSAEYTAKKCKE--IKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT 301 (345)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH--hchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 455788899999999999999998864 578999999999999999999998766555555443
No 21
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=62.84 E-value=17 Score=34.80 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=51.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHH
Q 011786 370 INSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITD 433 (477)
Q Consensus 370 L~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~ 433 (477)
|.++|.+++++++.....-..|+..+... -+..+|+.-+.+.|+|+-||+... ..+.+++..
T Consensus 64 l~~v~~~~~l~~~tl~lAv~~lDRfls~~--~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~ 126 (271)
T 2w96_A 64 MLEVCEEQKCEEEVFPLAMNYLDRFLSLE--PVKKSRLQLLGATCMFVASKMKETIPLTAEKLCI 126 (271)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHTTS--CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHHCCchhHHHHHHHHHHHhCCcC--CcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 78899999999887767777788777654 257789999999999999999886 678888765
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=61.98 E-value=13 Score=34.75 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=40.8
Q ss_pred HcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC
Q 011786 376 RLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL 424 (477)
Q Consensus 376 ~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~ 424 (477)
+++++.++.+..|.+++-++ .++++..+.--+|-..|||..+++.+.
T Consensus 144 ~~~~~~~~~~~A~~~l~~s~--~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 144 DGIINQKQLEFAWSIVNDSY--ASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp TTSSCHHHHHHHHHHHHHHT--TTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HcCCCHHHHHHHHHHHHHHH--cCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 46888889899999999875 568888999999999999999998764
No 23
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=59.38 E-value=10 Score=38.31 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcC
Q 011786 374 AERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINK 423 (477)
Q Consensus 374 C~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k 423 (477)
+..|+.+.++....|.+++.++. .++++....--+|-..|||..+++.+
T Consensus 161 ~~~l~~~~~l~~~A~~ll~~sl~-~t~l~l~y~Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 161 TQLVRASKDLAQTSYFMATNSLH-LTTFSLQYTPPVVACVCIHLACKWSN 209 (358)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTT-TSCGGGTSCHHHHTTTTTTTHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHh-cCcchhccCHHHHHHHHHHHHHHHhC
Confidence 44567788898899999988874 46777788888999999999999865
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=57.61 E-value=2.2 Score=43.20 Aligned_cols=62 Identities=6% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Q 011786 373 MAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLKLKFEEITDNYV 436 (477)
Q Consensus 373 LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~~tFk~Ii~~Yr 436 (477)
+|.+|++++++.+..|.+++.+.. .++.-+|+---|.--|||..|++.+..+|=++|-+.=.
T Consensus 242 f~s~L~l~~~v~~~A~~i~~~~~~--~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 242 FCSHLGLPMQVTTSAEYTAKKCKE--IKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHh--cccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 788999999999899999988765 67899999999999999999999988888887766433
No 25
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=57.40 E-value=25 Score=34.03 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHH
Q 011786 370 INSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITD 433 (477)
Q Consensus 370 L~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~ 433 (477)
|.++|.+++++++.....-..|+..+... ..+..+++.-+-++|+|+-||+... ..+.+|+..
T Consensus 57 l~~v~~~~~l~~~tl~lAv~~lDRfls~~-~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~ 120 (283)
T 1w98_B 57 LMEVCEVYKLHRETFYLAQDFFDRYMATQ-ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAY 120 (283)
T ss_dssp HHHHHHHTTCBHHHHHHHHHHHHHHHHHC-CCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 88899999999987777778888777642 2467899999999999999999865 567888764
No 26
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=53.80 E-value=21 Score=33.87 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHHH
Q 011786 366 GAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITDN 434 (477)
Q Consensus 366 Aa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~~ 434 (477)
...=|.++|.+++++++.....-..|+..+... -+..+|+--+-++|+|+-||+... ..+.+++...
T Consensus 54 lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~--~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK--QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 344578899999999997777777788777653 467889999999999999999764 5788887643
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=53.06 E-value=29 Score=32.75 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCC
Q 011786 374 AERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLK 425 (477)
Q Consensus 374 C~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~ 425 (477)
+..++.+.++....|...+.++. .++++....--+|-..|||..+++.+.+
T Consensus 154 ~~~l~~~~~~~~~A~~~~~~sl~-~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 204 (257)
T 2ivx_A 154 TQLVRASKDLAQTSYFMATNSLH-LTTFCLQYKPTVIACVCIHLACKWSNWE 204 (257)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH-HCCGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCcHHHHHHHHHHHhhhh-cccHHHcCCHHHHHHHHHHHHHHHhCCC
Confidence 34567788898899999988874 4777888889999999999999987644
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=52.87 E-value=24 Score=34.23 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC
Q 011786 373 MAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL 424 (477)
Q Consensus 373 LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~ 424 (477)
+|..|+.+.++....|...+.++ .++++....--+|-..|||..+++.+.
T Consensus 164 ~~~~l~~~~~~~~~A~~~l~~sl--~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 164 YVQDMGQEDMLLPLAWRIVNDTY--RTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHT--TSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH--ccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 34456677788899999999876 467788888899999999999998764
No 29
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=50.52 E-value=42 Score=31.52 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=40.4
Q ss_pred HHHHcCCCh----HHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCCC
Q 011786 373 MAERLKLSQ----QIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKLK 425 (477)
Q Consensus 373 LC~~L~ls~----~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~~ 425 (477)
+|..|+.+. ++....|.+.+.++. +.++....--+|-..|||..+++.+.+
T Consensus 158 ~~~~l~~~~~~~~~~~~~A~~l~~~s~~--~~~~l~~~Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 158 YAKQLKGDKNKIQKLVQMAWTFVNDSLC--TTLSLQWEPEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp HHHTBCSCHHHHHHHHHHHHHHHHHHTT--TTGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHc--CCchhccChHHHHHHHHHHHHHHhCCC
Confidence 345677775 577888999888864 567888889999999999999987643
No 30
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=44.30 E-value=28 Score=28.96 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCh--HHHHHHHHHHHHHHhhhhhccccCchh----HHHHHHHHHHHHhcCCCcCHHHHHH
Q 011786 370 INSMAERLKLSQ--QIREKTYLLFRQILVEKTYLFFNRHID----LIILCCFCGVAKINKLKLKFEEITD 433 (477)
Q Consensus 370 L~~LC~~L~ls~--~l~~kIWt~fe~~L~~~t~Lm~dRHLD----QiiLCaiY~icKv~k~~~tFk~Ii~ 433 (477)
++|||-.++..+ +..++|-..|+..+.+ ....++| |-.--|+|..||+.|..++=..++.
T Consensus 6 v~dLcVqfgc~e~~~~a~~lL~~Yk~~l~~----~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIEAVNMASKILKSYESSLPQ----TQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHTTSCH----HHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhHH----HhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 689999999976 3567788888855421 2234556 8889999999999998766555544
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=42.08 E-value=46 Score=31.42 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcC-CCcCHHHHH
Q 011786 367 AVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINK-LKLKFEEIT 432 (477)
Q Consensus 367 a~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k-~~~tFk~Ii 432 (477)
..=|.++|.+++++++.....-..|+..+... -+..+|+--+-++|+|+-||+.. ...+.+++.
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~--~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~ 120 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKK--QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLT 120 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTS--CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHS
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccC--CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 33477899999999987777777888777653 36788999999999999999965 356677664
No 32
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=40.26 E-value=98 Score=30.69 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhhccchHHHHHHHHHHHHHHHHHhcCCCcchhHHHHhhCCCceehhhh
Q 011786 112 GQERTEALKLYYKVLESICASEAGKSSSRDLSGLLTNEKFHRCMLACSAELVSMARTRVSILFPLILERAGITAFDMCKV 191 (477)
Q Consensus 112 ~~R~~~a~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~~y~~~~~~FPwiL~~~~i~afdf~KV 191 (477)
+.-..+|-++|.++-.. ..-++...+.+.-| ++|| +=++.-.-.....++=-||..++|.-.+|+|-
T Consensus 17 ~~~~~~Aw~~~~~~~~~----------~~~~~~~~~~~~~~--w~ac-LY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k 83 (304)
T 2qdj_A 17 DHVRERAWLTWEKVSSV----------DGVLGGYIQKKKEL--WGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFFNL 83 (304)
T ss_dssp HHHHHHHHHHHHHHHC--------------------CHHHH--HHHH-HHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----------ccccCCCccchHHH--HHHh-HHHHhhccCCCcCcHHHHHHHcCCCHHHHHHH
Confidence 56677899999765442 00112333333333 3333 44444444455578889999999999999999
Q ss_pred hhHhhhcCCCCCHHHHHHHHHHHHHH
Q 011786 192 TESFIRHEDSLPRELMRHLNSLEETM 217 (477)
Q Consensus 192 IE~fIR~e~~LpRelvkHLn~IEE~I 217 (477)
|.- . + +|.++.+++..+|...
T Consensus 84 ~~~---~-d-~~~~~~~~i~~Le~~f 104 (304)
T 2qdj_A 84 LKE---I-D-TSTKVDNAMSRLLKKY 104 (304)
T ss_dssp HTT---S-C-CCHHHHHHHHHHHHHH
T ss_pred HHH---c-C-CCHHHHHHHHHHHHHH
Confidence 987 2 3 9999999999999874
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=33.24 E-value=77 Score=30.97 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-CcCHHHHHH
Q 011786 365 LGAVRINSMAERLKLSQQIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-KLKFEEITD 433 (477)
Q Consensus 365 LAa~RL~~LC~~L~ls~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-~~tFk~Ii~ 433 (477)
.+..=|.++|.+++++++.....-..|+..+... -+..+|+--+-++|+|+-||+... ..+.+++..
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~--~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~ 140 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV--PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCI 140 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHH
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 3556688899999999988777778888777654 367889999999999999999543 335555543
No 34
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=29.33 E-value=6.5 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=8.4
Q ss_pred ccccccccccccc
Q 011786 464 NYKSIDAFYNKYS 476 (477)
Q Consensus 464 e~~DII~FYN~VF 476 (477)
-..|||.+||+-|
T Consensus 24 ~F~diI~~yNkLl 36 (36)
T 4gdk_C 24 AFEEIILQYNKLL 36 (36)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcccC
Confidence 4467777777643
No 35
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=22.10 E-value=1.7e+02 Score=27.48 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=44.2
Q ss_pred HHHHcCCCh-HHHHHHHHHHHHHHhhhhhccccCchhHHHHHHHHHHHHhcCC-----------CcCHHHHHHHHhc
Q 011786 373 MAERLKLSQ-QIREKTYLLFRQILVEKTYLFFNRHIDLIILCCFCGVAKINKL-----------KLKFEEITDNYVK 437 (477)
Q Consensus 373 LC~~L~ls~-~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~icKv~k~-----------~~tFk~Ii~~Yr~ 437 (477)
+|..+++++ ++....|.+.|.++.+ ..++....--.|-..|||..++..+. ..+-.+|..||+.
T Consensus 146 ~~~~l~~~~~~~~~~a~~l~e~sl~~-~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~ 221 (260)
T 2cch_B 146 YFLHQQPANCKVESLAMFLGELSLID-ADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMD 221 (260)
T ss_dssp HHTTCSSCCHHHHHHHHHHHHHHHHC-HHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHh-HHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHHH
Confidence 455677665 6788889999987753 33466777888999999998876432 3455556665543
Done!