Query 011787
Match_columns 477
No_of_seqs 316 out of 2811
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 8.5E-80 1.8E-84 599.3 53.4 428 41-473 2-430 (454)
2 KOG1335 Dihydrolipoamide dehyd 100.0 2.6E-80 5.6E-85 558.2 41.5 439 33-471 29-469 (506)
3 PRK06467 dihydrolipoamide dehy 100.0 4E-72 8.7E-77 562.3 55.5 431 40-473 1-431 (471)
4 PRK06115 dihydrolipoamide dehy 100.0 9.9E-72 2.1E-76 559.2 56.2 429 43-473 3-432 (466)
5 PRK07818 dihydrolipoamide dehy 100.0 2.5E-69 5.4E-74 543.3 56.8 428 42-473 3-432 (466)
6 PRK05249 soluble pyridine nucl 100.0 2.5E-69 5.4E-74 544.3 54.7 428 40-473 2-429 (461)
7 PRK06327 dihydrolipoamide dehy 100.0 1.6E-68 3.4E-73 537.9 55.7 430 41-473 2-441 (475)
8 PLN02507 glutathione reductase 100.0 1.6E-68 3.4E-73 537.8 55.5 423 41-473 23-459 (499)
9 PRK06416 dihydrolipoamide dehy 100.0 1.6E-68 3.5E-73 538.2 55.4 426 42-473 3-428 (462)
10 TIGR01424 gluta_reduc_2 glutat 100.0 1.6E-68 3.4E-73 534.2 54.5 417 43-473 2-422 (446)
11 PRK07846 mycothione reductase; 100.0 9.9E-69 2.1E-73 534.3 52.4 417 43-473 1-421 (451)
12 PRK06370 mercuric reductase; V 100.0 2.6E-68 5.7E-73 535.9 55.4 426 39-473 1-429 (463)
13 PRK06116 glutathione reductase 100.0 2.1E-68 4.5E-73 535.1 53.8 420 41-473 2-426 (450)
14 PRK07845 flavoprotein disulfid 100.0 3.8E-68 8.3E-73 533.3 55.0 423 44-473 2-432 (466)
15 PRK05976 dihydrolipoamide dehy 100.0 8.5E-68 1.9E-72 533.0 56.9 428 41-473 2-438 (472)
16 TIGR01421 gluta_reduc_1 glutat 100.0 4.8E-68 1E-72 529.7 54.5 418 43-473 2-426 (450)
17 TIGR01423 trypano_reduc trypan 100.0 5.2E-68 1.1E-72 530.4 53.5 424 42-473 2-447 (486)
18 PLN02546 glutathione reductase 100.0 5E-68 1.1E-72 535.5 51.8 417 42-473 78-508 (558)
19 PRK14694 putative mercuric red 100.0 1.3E-67 2.8E-72 530.7 53.8 424 41-473 4-429 (468)
20 TIGR03452 mycothione_red mycot 100.0 1E-67 2.2E-72 527.6 52.2 417 43-473 2-424 (452)
21 PRK14727 putative mercuric red 100.0 1.8E-67 3.9E-72 530.2 54.3 425 41-473 14-440 (479)
22 PTZ00153 lipoamide dehydrogena 100.0 2E-67 4.3E-72 536.7 53.8 427 43-473 116-626 (659)
23 TIGR02053 MerA mercuric reduct 100.0 3.1E-67 6.7E-72 528.5 54.6 420 44-473 1-424 (463)
24 PRK06912 acoL dihydrolipoamide 100.0 3.4E-67 7.4E-72 526.2 54.3 421 45-473 2-424 (458)
25 PTZ00058 glutathione reductase 100.0 1.1E-66 2.4E-71 525.2 53.5 419 42-473 47-533 (561)
26 TIGR01438 TGR thioredoxin and 100.0 2.1E-66 4.5E-71 520.5 53.2 426 43-473 2-444 (484)
27 PRK13748 putative mercuric red 100.0 2.2E-66 4.7E-71 535.1 53.3 424 42-473 97-522 (561)
28 PRK06292 dihydrolipoamide dehy 100.0 5E-66 1.1E-70 520.1 53.2 420 42-473 2-426 (460)
29 PRK08010 pyridine nucleotide-d 100.0 1.5E-65 3.3E-70 513.1 53.1 406 42-473 2-413 (441)
30 TIGR01350 lipoamide_DH dihydro 100.0 4.2E-65 9.2E-70 513.8 55.8 425 43-473 1-427 (461)
31 PTZ00052 thioredoxin reductase 100.0 1E-64 2.2E-69 510.7 53.5 423 42-473 4-454 (499)
32 KOG0405 Pyridine nucleotide-di 100.0 1.6E-65 3.5E-70 456.8 38.4 424 40-472 17-447 (478)
33 PRK07251 pyridine nucleotide-d 100.0 5.3E-64 1.2E-68 501.5 53.7 405 43-473 3-412 (438)
34 KOG4716 Thioredoxin reductase 100.0 1.6E-55 3.5E-60 391.3 33.5 427 40-471 16-462 (503)
35 PRK13512 coenzyme A disulfide 100.0 1.1E-53 2.4E-58 425.8 40.4 377 44-473 2-406 (438)
36 PRK09564 coenzyme A disulfide 100.0 2.5E-52 5.4E-57 419.2 38.0 381 45-473 2-412 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 3.6E-46 7.8E-51 372.3 34.3 320 142-473 53-399 (427)
38 PRK14989 nitrite reductase sub 100.0 7.8E-44 1.7E-48 374.9 38.5 367 43-471 3-392 (847)
39 PRK09754 phenylpropionate diox 100.0 5.5E-42 1.2E-46 338.1 36.1 348 43-458 3-369 (396)
40 PRK04965 NADH:flavorubredoxin 100.0 8.8E-40 1.9E-44 320.7 37.0 349 44-463 3-369 (377)
41 TIGR02374 nitri_red_nirB nitri 100.0 2.8E-39 6E-44 341.4 34.0 358 46-468 1-375 (785)
42 COG1252 Ndh NADH dehydrogenase 100.0 1.2E-39 2.6E-44 309.7 23.3 284 43-378 3-329 (405)
43 PTZ00318 NADH dehydrogenase-li 100.0 5.7E-38 1.2E-42 311.6 31.6 287 40-378 7-345 (424)
44 TIGR01292 TRX_reduct thioredox 100.0 7.8E-37 1.7E-41 291.7 30.7 291 44-378 1-298 (300)
45 TIGR03143 AhpF_homolog putativ 100.0 2.1E-35 4.6E-40 301.7 31.9 292 41-377 2-305 (555)
46 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-35 3.3E-40 300.7 29.6 292 41-378 210-510 (515)
47 TIGR01316 gltA glutamate synth 100.0 1.9E-35 4.2E-40 294.9 27.1 282 40-378 130-447 (449)
48 PRK10262 thioredoxin reductase 100.0 6.6E-35 1.4E-39 280.2 28.8 295 42-378 5-312 (321)
49 PRK15317 alkyl hydroperoxide r 100.0 1.2E-34 2.6E-39 294.5 32.0 292 41-378 209-509 (517)
50 COG0492 TrxB Thioredoxin reduc 100.0 1.1E-34 2.4E-39 270.1 29.0 289 42-378 2-298 (305)
51 PRK12831 putative oxidoreducta 100.0 7.8E-35 1.7E-39 290.8 28.6 287 40-378 137-458 (464)
52 TIGR03169 Nterm_to_SelD pyridi 100.0 9.5E-35 2.1E-39 284.4 25.6 281 45-378 1-308 (364)
53 PRK09853 putative selenate red 100.0 6.3E-34 1.4E-38 297.5 29.9 283 41-380 537-841 (1019)
54 COG1251 NirB NAD(P)H-nitrite r 100.0 7.3E-34 1.6E-38 279.0 25.2 349 43-459 3-372 (793)
55 PRK11749 dihydropyrimidine deh 100.0 2.1E-33 4.6E-38 281.8 28.2 282 41-378 138-449 (457)
56 TIGR03315 Se_ygfK putative sel 100.0 4.2E-33 9.1E-38 293.0 30.4 280 42-379 536-838 (1012)
57 PRK12770 putative glutamate sy 100.0 1E-32 2.2E-37 267.8 29.1 289 42-378 17-347 (352)
58 PRK12779 putative bifunctional 100.0 2.7E-32 6E-37 290.2 31.4 282 42-378 305-624 (944)
59 PRK12778 putative bifunctional 100.0 1.5E-32 3.4E-37 290.7 29.0 283 41-378 429-747 (752)
60 PRK12810 gltD glutamate syntha 100.0 3.9E-32 8.6E-37 273.0 27.5 287 41-378 141-462 (471)
61 KOG1336 Monodehydroascorbate/f 100.0 2.6E-32 5.7E-37 256.7 22.1 295 43-389 74-392 (478)
62 PRK12814 putative NADPH-depend 100.0 1.1E-31 2.5E-36 278.5 28.5 279 42-377 192-497 (652)
63 PRK12775 putative trifunctiona 100.0 1.2E-30 2.6E-35 280.3 28.6 282 42-377 429-751 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 2.5E-30 5.3E-35 259.0 28.8 281 42-378 140-463 (467)
65 PRK12769 putative oxidoreducta 100.0 2.2E-30 4.9E-35 270.1 29.1 281 42-378 326-649 (654)
66 KOG2495 NADH-dehydrogenase (ub 100.0 3.7E-30 8.1E-35 237.5 19.5 292 40-377 52-393 (491)
67 TIGR01317 GOGAT_sm_gam glutama 100.0 5.1E-29 1.1E-33 250.4 28.2 285 42-378 142-476 (485)
68 PRK12809 putative oxidoreducta 100.0 4.2E-29 9.1E-34 259.3 28.4 282 42-379 309-633 (639)
69 PRK13984 putative oxidoreducta 100.0 1.9E-28 4.1E-33 254.3 27.6 281 41-378 281-599 (604)
70 PLN02852 ferredoxin-NADP+ redu 100.0 7.8E-28 1.7E-32 237.8 29.6 289 42-379 25-420 (491)
71 COG3634 AhpF Alkyl hydroperoxi 100.0 2.1E-29 4.5E-34 225.8 15.5 290 42-377 210-511 (520)
72 COG0446 HcaD Uncharacterized N 100.0 1.6E-26 3.4E-31 231.0 30.3 370 46-471 1-398 (415)
73 TIGR01372 soxA sarcosine oxida 100.0 2.3E-26 5E-31 248.9 31.8 281 41-377 161-468 (985)
74 KOG0404 Thioredoxin reductase 100.0 2.6E-27 5.5E-32 199.8 18.0 287 43-373 8-311 (322)
75 PRK12771 putative glutamate sy 100.0 1.4E-26 3E-31 238.1 27.3 279 41-377 135-440 (564)
76 KOG1346 Programmed cell death 99.9 2.6E-27 5.6E-32 217.0 13.6 315 42-380 177-520 (659)
77 PLN02172 flavin-containing mon 99.9 6.2E-25 1.3E-29 218.3 26.0 313 40-379 7-351 (461)
78 PF00743 FMO-like: Flavin-bind 99.9 1E-22 2.3E-27 204.9 18.5 313 44-379 2-395 (531)
79 COG0493 GltD NADPH-dependent g 99.9 2.3E-22 5E-27 197.0 14.9 287 41-377 121-447 (457)
80 PRK06567 putative bifunctional 99.8 2.4E-19 5.3E-24 186.0 24.7 288 41-377 381-766 (1028)
81 KOG0399 Glutamate synthase [Am 99.8 1.1E-19 2.5E-24 183.9 18.2 281 41-377 1783-2116(2142)
82 KOG2755 Oxidoreductase [Genera 99.8 2.1E-19 4.5E-24 155.8 16.0 265 45-357 1-321 (334)
83 PF07992 Pyr_redox_2: Pyridine 99.8 8.7E-20 1.9E-24 163.3 13.2 187 45-359 1-200 (201)
84 PF13434 K_oxygenase: L-lysine 99.8 4.3E-19 9.3E-24 169.6 17.9 267 43-315 2-340 (341)
85 PF13738 Pyr_redox_3: Pyridine 99.8 7.8E-19 1.7E-23 157.4 15.9 189 47-248 1-201 (203)
86 COG2072 TrkA Predicted flavopr 99.8 8.4E-19 1.8E-23 173.9 15.4 198 39-249 4-210 (443)
87 COG3486 IucD Lysine/ornithine 99.8 7.9E-17 1.7E-21 149.6 25.5 331 39-379 1-413 (436)
88 PRK05329 anaerobic glycerol-3- 99.8 4.8E-17 1E-21 159.0 24.4 157 217-378 218-418 (422)
89 PTZ00188 adrenodoxin reductase 99.8 1.1E-16 2.5E-21 155.8 25.0 282 41-378 37-437 (506)
90 COG1148 HdrA Heterodisulfide r 99.7 1.1E-16 2.4E-21 150.7 19.2 203 169-376 293-540 (622)
91 KOG1399 Flavin-containing mono 99.7 1.2E-16 2.7E-21 155.9 20.4 305 41-379 4-332 (448)
92 KOG3851 Sulfide:quinone oxidor 99.7 4.5E-18 9.8E-23 151.7 8.6 291 41-377 37-357 (446)
93 PF02852 Pyr_redox_dim: Pyridi 99.7 1.5E-17 3.2E-22 132.6 10.5 86 388-473 1-86 (110)
94 KOG1800 Ferredoxin/adrenodoxin 99.7 1.1E-15 2.4E-20 139.9 16.8 284 41-378 18-404 (468)
95 COG4529 Uncharacterized protei 99.7 1.1E-13 2.3E-18 132.7 28.4 331 43-377 1-459 (474)
96 PF00070 Pyr_redox: Pyridine n 99.5 7.8E-13 1.7E-17 98.8 12.1 78 216-293 1-78 (80)
97 COG2081 Predicted flavoprotein 99.4 9.9E-12 2.1E-16 116.3 17.2 58 255-317 111-170 (408)
98 PRK08401 L-aspartate oxidase; 99.4 1.6E-12 3.5E-17 130.9 12.9 144 43-189 1-176 (466)
99 PRK07843 3-ketosteroid-delta-1 99.4 1.8E-11 3.9E-16 125.8 18.2 107 210-318 156-272 (557)
100 PRK09897 hypothetical protein; 99.4 1E-10 2.2E-15 118.0 21.6 201 43-249 1-247 (534)
101 COG0029 NadB Aspartate oxidase 99.3 2.3E-11 5E-16 116.5 15.4 312 45-379 9-396 (518)
102 PRK12842 putative succinate de 99.3 1.7E-11 3.7E-16 126.7 15.4 112 204-317 147-276 (574)
103 TIGR00551 nadB L-aspartate oxi 99.3 1.9E-11 4.1E-16 124.0 15.5 146 43-189 2-190 (488)
104 PRK06263 sdhA succinate dehydr 99.3 1.9E-11 4.2E-16 125.5 15.3 39 42-81 6-45 (543)
105 PRK08275 putative oxidoreducta 99.3 3E-11 6.4E-16 124.3 15.8 147 42-188 8-200 (554)
106 PRK09231 fumarate reductase fl 99.3 7.9E-11 1.7E-15 121.5 16.0 40 43-82 4-45 (582)
107 PRK13800 putative oxidoreducta 99.3 4E-11 8.7E-16 129.8 14.2 46 333-378 361-407 (897)
108 PRK06134 putative FAD-binding 99.3 7.6E-11 1.6E-15 121.8 14.8 246 41-317 10-279 (581)
109 PF03486 HI0933_like: HI0933-l 99.3 1.7E-11 3.6E-16 119.9 9.4 136 44-188 1-166 (409)
110 PRK09077 L-aspartate oxidase; 99.2 3.7E-10 8E-15 115.7 18.7 39 42-81 7-45 (536)
111 PRK06854 adenylylsulfate reduc 99.2 8.7E-11 1.9E-15 121.7 13.7 37 43-79 11-49 (608)
112 PRK07804 L-aspartate oxidase; 99.2 1.2E-10 2.6E-15 119.3 14.6 39 42-80 15-53 (541)
113 PRK08205 sdhA succinate dehydr 99.2 2.3E-10 4.9E-15 118.4 16.5 40 40-80 2-41 (583)
114 TIGR03378 glycerol3P_GlpB glyc 99.2 1.5E-08 3.3E-13 98.3 26.7 121 255-377 263-419 (419)
115 PRK08071 L-aspartate oxidase; 99.2 1.9E-10 4.1E-15 117.0 14.2 39 43-82 3-41 (510)
116 TIGR01176 fum_red_Fp fumarate 99.2 1.5E-10 3.2E-15 119.2 13.5 40 43-82 3-44 (580)
117 PRK07395 L-aspartate oxidase; 99.2 1.4E-10 3E-15 118.7 13.2 41 41-82 7-47 (553)
118 PRK06452 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 120.1 12.4 39 42-80 4-42 (566)
119 PRK06175 L-aspartate oxidase; 99.2 3.1E-10 6.6E-15 113.1 13.9 39 42-81 3-41 (433)
120 PRK05945 sdhA succinate dehydr 99.2 1E-10 2.3E-15 120.8 10.4 39 42-80 2-42 (575)
121 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.8E-09 1.3E-13 108.1 22.7 36 45-80 1-36 (566)
122 PRK06069 sdhA succinate dehydr 99.2 7E-09 1.5E-13 107.4 23.1 41 41-81 3-46 (577)
123 PLN02815 L-aspartate oxidase 99.2 9.9E-10 2.1E-14 113.0 16.6 39 42-81 28-66 (594)
124 PRK08641 sdhA succinate dehydr 99.2 5.3E-10 1.2E-14 115.6 14.7 39 42-80 2-40 (589)
125 PRK07573 sdhA succinate dehydr 99.1 4.7E-09 1E-13 109.4 21.4 38 42-79 34-71 (640)
126 TIGR02061 aprA adenosine phosp 99.1 1.8E-08 3.9E-13 103.8 23.8 34 45-78 1-38 (614)
127 PRK05192 tRNA uridine 5-carbox 99.1 7.1E-10 1.5E-14 111.9 12.6 142 41-188 2-157 (618)
128 COG3075 GlpB Anaerobic glycero 99.1 1E-08 2.2E-13 93.0 18.3 120 257-378 260-415 (421)
129 PRK08626 fumarate reductase fl 99.1 7.5E-10 1.6E-14 115.5 12.3 39 42-80 4-42 (657)
130 TIGR01811 sdhA_Bsu succinate d 99.0 8.1E-09 1.8E-13 107.0 18.0 33 46-78 1-33 (603)
131 PRK04176 ribulose-1,5-biphosph 99.0 8E-09 1.7E-13 95.2 14.0 135 42-188 24-173 (257)
132 PRK07512 L-aspartate oxidase; 99.0 7.4E-09 1.6E-13 105.5 15.1 38 41-80 7-45 (513)
133 TIGR00292 thiazole biosynthesi 99.0 9.2E-09 2E-13 94.4 12.6 40 42-81 20-59 (254)
134 TIGR02028 ChlP geranylgeranyl 98.9 4.6E-09 1E-13 103.8 10.6 140 44-189 1-161 (398)
135 PRK12409 D-amino acid dehydrog 98.9 1.3E-07 2.9E-12 94.2 21.1 61 256-316 198-258 (410)
136 PRK11728 hydroxyglutarate oxid 98.9 6.5E-08 1.4E-12 95.8 17.7 57 254-316 148-204 (393)
137 PF01266 DAO: FAD dependent ox 98.9 7.5E-08 1.6E-12 94.0 17.9 59 254-318 146-205 (358)
138 PLN02463 lycopene beta cyclase 98.9 2.4E-08 5.2E-13 99.4 14.3 142 37-189 22-170 (447)
139 PRK08163 salicylate hydroxylas 98.9 7.6E-08 1.6E-12 95.6 17.2 58 256-318 110-168 (396)
140 COG0644 FixC Dehydrogenases (f 98.9 1.4E-08 3E-13 100.5 11.8 143 42-188 2-152 (396)
141 PF00890 FAD_binding_2: FAD bi 98.9 8.4E-08 1.8E-12 95.9 17.2 63 255-317 141-204 (417)
142 TIGR01790 carotene-cycl lycope 98.9 1.6E-08 3.5E-13 100.1 11.3 134 45-188 1-141 (388)
143 PLN02661 Putative thiazole syn 98.9 2.2E-08 4.9E-13 94.5 11.3 136 42-188 91-244 (357)
144 COG1053 SdhA Succinate dehydro 98.8 3.7E-08 8E-13 100.1 13.7 41 40-80 3-43 (562)
145 PRK10015 oxidoreductase; Provi 98.8 1.4E-07 3.1E-12 94.1 17.7 38 42-79 4-41 (429)
146 PRK06847 hypothetical protein; 98.8 9.5E-08 2.1E-12 94.1 16.2 60 255-319 107-166 (375)
147 TIGR01292 TRX_reduct thioredox 98.8 5.6E-08 1.2E-12 92.6 14.0 99 216-320 2-116 (300)
148 PRK08274 tricarballylate dehyd 98.8 6.7E-08 1.5E-12 97.9 15.3 59 255-314 131-190 (466)
149 TIGR00275 flavoprotein, HI0933 98.8 6.6E-08 1.4E-12 95.6 14.8 80 230-316 79-160 (400)
150 PRK12845 3-ketosteroid-delta-1 98.8 3.5E-07 7.6E-12 94.0 20.2 54 41-95 14-70 (564)
151 PRK10157 putative oxidoreducta 98.8 5.5E-08 1.2E-12 97.1 14.0 39 42-80 4-42 (428)
152 TIGR01377 soxA_mon sarcosine o 98.8 2.4E-07 5.1E-12 91.5 18.4 56 255-316 145-200 (380)
153 COG1635 THI4 Ribulose 1,5-bisp 98.8 5.6E-08 1.2E-12 83.5 11.5 40 43-82 30-70 (262)
154 COG0579 Predicted dehydrogenas 98.8 2.3E-07 4.9E-12 90.2 16.5 58 255-316 153-211 (429)
155 PLN00093 geranylgeranyl diphos 98.8 6.4E-08 1.4E-12 96.8 12.8 38 39-76 35-72 (450)
156 PF01134 GIDA: Glucose inhibit 98.8 1.8E-08 3.9E-13 96.6 8.2 125 45-186 1-150 (392)
157 PRK06184 hypothetical protein; 98.8 2E-07 4.4E-12 95.3 16.5 59 256-316 110-168 (502)
158 PRK06481 fumarate reductase fl 98.8 5.4E-08 1.2E-12 99.2 12.0 41 42-82 60-100 (506)
159 TIGR02032 GG-red-SF geranylger 98.8 6.2E-08 1.3E-12 91.9 11.8 37 44-80 1-37 (295)
160 PF12831 FAD_oxidored: FAD dep 98.8 7.5E-09 1.6E-13 103.2 5.6 138 45-186 1-148 (428)
161 PF13454 NAD_binding_9: FAD-NA 98.8 1.2E-07 2.5E-12 80.7 12.1 133 47-186 1-155 (156)
162 PRK11259 solA N-methyltryptoph 98.8 4.1E-07 8.9E-12 89.7 17.9 56 255-316 149-204 (376)
163 PRK06834 hypothetical protein; 98.8 6.5E-08 1.4E-12 98.0 12.3 145 42-188 2-156 (488)
164 PRK09126 hypothetical protein; 98.8 3.3E-07 7.2E-12 90.8 17.2 56 259-319 114-170 (392)
165 PF01946 Thi4: Thi4 family; PD 98.8 3.5E-08 7.6E-13 85.3 8.7 39 43-81 17-55 (230)
166 PRK13977 myosin-cross-reactive 98.8 1.1E-07 2.5E-12 95.3 13.5 96 224-319 192-296 (576)
167 TIGR00136 gidA glucose-inhibit 98.7 6.3E-08 1.4E-12 97.9 11.2 140 44-188 1-154 (617)
168 PRK07121 hypothetical protein; 98.7 5.5E-07 1.2E-11 91.8 17.7 44 42-85 19-62 (492)
169 PRK05714 2-octaprenyl-3-methyl 98.7 5.1E-07 1.1E-11 89.9 17.1 58 256-318 113-170 (405)
170 PRK07494 2-octaprenyl-6-methox 98.7 1.6E-07 3.4E-12 93.0 13.2 40 39-78 3-42 (388)
171 PRK00711 D-amino acid dehydrog 98.7 7.4E-07 1.6E-11 89.1 18.1 55 256-316 202-257 (416)
172 TIGR02023 BchP-ChlP geranylger 98.7 1.1E-07 2.3E-12 94.1 11.6 32 44-75 1-32 (388)
173 PLN02697 lycopene epsilon cycl 98.7 1.8E-07 4E-12 94.6 13.1 139 41-188 106-248 (529)
174 PRK07364 2-octaprenyl-6-methox 98.7 6.9E-07 1.5E-11 89.3 17.1 60 257-318 123-183 (415)
175 PRK08013 oxidoreductase; Provi 98.7 7.9E-07 1.7E-11 88.3 17.3 58 256-318 112-170 (400)
176 PRK11101 glpA sn-glycerol-3-ph 98.7 1.5E-06 3.3E-11 89.4 19.8 62 255-316 149-211 (546)
177 PRK07190 hypothetical protein; 98.7 2.6E-07 5.6E-12 93.6 13.7 141 41-188 3-165 (487)
178 PF13450 NAD_binding_8: NAD(P) 98.7 2.7E-08 5.8E-13 71.1 4.6 38 48-85 1-38 (68)
179 PRK08773 2-octaprenyl-3-methyl 98.7 1.3E-07 2.8E-12 93.7 11.0 37 41-77 4-40 (392)
180 PTZ00139 Succinate dehydrogena 98.7 2.5E-07 5.5E-12 96.2 13.3 147 42-188 28-229 (617)
181 PRK13369 glycerol-3-phosphate 98.7 2.8E-06 6.1E-11 86.7 20.7 62 254-316 154-215 (502)
182 PRK12839 hypothetical protein; 98.7 1.1E-06 2.4E-11 90.6 17.8 54 40-93 5-61 (572)
183 PRK06183 mhpA 3-(3-hydroxyphen 98.7 1.3E-06 2.9E-11 90.1 18.4 60 256-316 114-174 (538)
184 PRK06126 hypothetical protein; 98.7 7.9E-07 1.7E-11 92.0 16.8 61 256-316 127-188 (545)
185 PRK07588 hypothetical protein; 98.7 5.9E-07 1.3E-11 89.0 15.1 57 257-319 105-161 (391)
186 PF05834 Lycopene_cycl: Lycope 98.6 7.7E-08 1.7E-12 94.3 8.6 135 45-188 1-142 (374)
187 PRK05257 malate:quinone oxidor 98.6 1.5E-06 3.3E-11 87.8 17.9 62 255-316 183-246 (494)
188 PRK12266 glpD glycerol-3-phosp 98.6 8E-07 1.7E-11 90.7 15.9 62 255-316 155-216 (508)
189 PRK09078 sdhA succinate dehydr 98.6 4.9E-07 1.1E-11 93.9 14.1 60 255-314 149-210 (598)
190 PRK08850 2-octaprenyl-6-methox 98.6 1.7E-06 3.6E-11 86.2 17.4 55 259-318 115-170 (405)
191 PRK08132 FAD-dependent oxidore 98.6 1.4E-06 3E-11 90.2 17.2 60 256-317 126-186 (547)
192 TIGR01320 mal_quin_oxido malat 98.6 1.1E-06 2.3E-11 88.8 15.9 63 254-316 177-240 (483)
193 PRK13339 malate:quinone oxidor 98.6 2E-06 4.4E-11 86.3 17.6 63 255-317 184-248 (497)
194 TIGR03329 Phn_aa_oxid putative 98.6 1.9E-06 4.2E-11 87.1 17.5 55 254-315 182-236 (460)
195 PRK07057 sdhA succinate dehydr 98.6 8E-07 1.7E-11 92.2 15.0 40 42-81 11-50 (591)
196 PTZ00383 malate:quinone oxidor 98.6 4.1E-06 8.8E-11 84.5 19.6 56 255-316 211-273 (497)
197 COG0654 UbiH 2-polyprenyl-6-me 98.6 1.8E-06 3.8E-11 85.3 16.8 59 256-318 105-164 (387)
198 PRK07803 sdhA succinate dehydr 98.6 4.6E-07 1E-11 94.5 13.2 37 43-79 8-44 (626)
199 TIGR01988 Ubi-OHases Ubiquinon 98.6 1.8E-06 3.8E-11 85.4 16.6 58 256-318 107-165 (385)
200 PLN00128 Succinate dehydrogena 98.6 4.7E-07 1E-11 94.3 12.7 39 42-80 49-87 (635)
201 PRK08020 ubiF 2-octaprenyl-3-m 98.6 2.1E-06 4.6E-11 85.0 16.7 58 256-318 113-171 (391)
202 PRK08958 sdhA succinate dehydr 98.6 8.7E-07 1.9E-11 91.8 14.2 39 42-80 6-44 (588)
203 KOG2415 Electron transfer flav 98.6 1.4E-07 3.1E-12 88.3 7.4 48 41-88 74-127 (621)
204 TIGR01813 flavo_cyto_c flavocy 98.6 4.5E-07 9.7E-12 91.2 11.7 39 45-83 1-40 (439)
205 PRK06617 2-octaprenyl-6-methox 98.6 2.7E-06 5.8E-11 83.7 16.9 58 256-319 105-163 (374)
206 PRK12834 putative FAD-binding 98.6 1.1E-06 2.3E-11 90.8 14.5 43 41-83 2-46 (549)
207 PRK11445 putative oxidoreducta 98.5 8.6E-07 1.9E-11 86.3 12.6 35 43-78 1-35 (351)
208 PRK07608 ubiquinone biosynthes 98.5 1.1E-06 2.3E-11 87.1 13.5 36 43-78 5-40 (388)
209 COG1231 Monoamine oxidase [Ami 98.5 1.1E-06 2.4E-11 84.3 12.8 44 41-84 5-48 (450)
210 TIGR00292 thiazole biosynthesi 98.5 2.8E-06 6E-11 78.1 15.0 165 214-378 21-251 (254)
211 PRK12844 3-ketosteroid-delta-1 98.5 2.2E-06 4.8E-11 88.3 15.7 44 43-86 6-49 (557)
212 COG0578 GlpA Glycerol-3-phosph 98.5 4.4E-07 9.5E-12 90.1 10.0 63 254-316 163-225 (532)
213 PRK08244 hypothetical protein; 98.5 5.2E-07 1.1E-11 92.1 11.0 36 43-78 2-37 (493)
214 PF13738 Pyr_redox_3: Pyridine 98.5 5.6E-07 1.2E-11 80.3 9.9 98 218-320 1-144 (203)
215 PTZ00306 NADH-dependent fumara 98.5 8.8E-07 1.9E-11 98.7 13.3 43 41-83 407-449 (1167)
216 PRK06475 salicylate hydroxylas 98.5 2.6E-06 5.7E-11 84.6 15.0 61 256-318 108-169 (400)
217 TIGR01350 lipoamide_DH dihydro 98.5 3.1E-06 6.6E-11 85.8 15.7 99 43-190 170-271 (461)
218 TIGR01373 soxB sarcosine oxida 98.5 8.4E-06 1.8E-10 81.2 18.6 41 40-80 27-69 (407)
219 PRK01747 mnmC bifunctional tRN 98.5 4.5E-06 9.8E-11 88.3 17.1 58 254-317 407-464 (662)
220 PRK04176 ribulose-1,5-biphosph 98.5 6E-06 1.3E-10 76.1 15.5 166 214-379 25-253 (257)
221 PF03486 HI0933_like: HI0933-l 98.5 8.4E-07 1.8E-11 87.1 9.9 96 216-316 2-166 (409)
222 PRK08849 2-octaprenyl-3-methyl 98.5 8.3E-07 1.8E-11 87.7 9.9 34 43-76 3-36 (384)
223 PF01494 FAD_binding_3: FAD bi 98.4 4.6E-06 9.9E-11 81.3 14.8 103 216-318 3-174 (356)
224 PLN02172 flavin-containing mon 98.4 4.5E-06 9.8E-11 83.7 14.7 106 214-320 10-179 (461)
225 PRK07333 2-octaprenyl-6-methox 98.4 7.5E-07 1.6E-11 88.7 9.2 35 43-77 1-37 (403)
226 PRK06185 hypothetical protein; 98.4 2.1E-05 4.6E-10 78.4 19.4 36 41-76 4-39 (407)
227 PF01494 FAD_binding_3: FAD bi 98.4 6E-07 1.3E-11 87.6 8.1 35 44-78 2-36 (356)
228 TIGR03364 HpnW_proposed FAD de 98.4 1.3E-05 2.8E-10 78.6 17.5 34 44-77 1-34 (365)
229 PLN02464 glycerol-3-phosphate 98.4 4.4E-06 9.5E-11 87.2 14.8 62 254-315 231-295 (627)
230 TIGR03140 AhpF alkyl hydropero 98.4 4E-06 8.6E-11 85.9 14.3 102 213-319 211-326 (515)
231 PRK15317 alkyl hydroperoxide r 98.4 3.2E-06 7E-11 86.6 13.5 101 214-319 211-325 (517)
232 PTZ00363 rab-GDP dissociation 98.4 1.9E-06 4.1E-11 85.6 11.4 45 40-84 1-45 (443)
233 PRK12843 putative FAD-binding 98.4 8.4E-05 1.8E-09 77.2 23.9 44 43-86 16-59 (578)
234 TIGR01789 lycopene_cycl lycope 98.4 9.1E-07 2E-11 86.4 9.0 36 45-80 1-38 (370)
235 COG2907 Predicted NAD/FAD-bind 98.4 1.8E-06 3.8E-11 79.4 10.0 41 42-83 7-47 (447)
236 COG1233 Phytoene dehydrogenase 98.4 3.4E-07 7.5E-12 92.7 5.9 44 42-85 2-45 (487)
237 PRK09564 coenzyme A disulfide 98.4 2E-06 4.3E-11 86.7 11.1 102 215-320 1-119 (444)
238 PRK07251 pyridine nucleotide-d 98.4 9.5E-06 2.1E-10 81.6 15.9 95 43-189 157-254 (438)
239 COG1232 HemY Protoporphyrinoge 98.4 1.2E-06 2.7E-11 85.8 9.0 41 44-84 1-43 (444)
240 PRK05976 dihydrolipoamide dehy 98.4 4.6E-06 1E-10 84.6 13.5 99 43-190 180-283 (472)
241 PRK05732 2-octaprenyl-6-methox 98.4 1.6E-06 3.5E-11 86.0 10.1 34 42-75 2-38 (395)
242 PRK09754 phenylpropionate diox 98.4 2.7E-06 5.9E-11 84.3 11.4 99 214-319 3-115 (396)
243 PRK08243 4-hydroxybenzoate 3-m 98.4 2.4E-06 5.1E-11 84.7 10.9 35 43-77 2-36 (392)
244 KOG0029 Amine oxidase [Seconda 98.4 4.5E-07 9.7E-12 91.0 5.7 44 39-82 11-54 (501)
245 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 2.3E-06 5E-11 84.5 10.7 35 43-77 2-36 (390)
246 COG0445 GidA Flavin-dependent 98.4 5.1E-07 1.1E-11 88.0 5.7 143 41-188 2-158 (621)
247 TIGR01984 UbiH 2-polyprenyl-6- 98.4 1.7E-06 3.6E-11 85.5 9.4 33 45-77 1-34 (382)
248 PRK12835 3-ketosteroid-delta-1 98.4 1.5E-05 3.3E-10 82.6 16.8 40 42-81 10-49 (584)
249 PRK06996 hypothetical protein; 98.3 2.3E-06 4.9E-11 85.0 9.8 38 39-76 7-48 (398)
250 TIGR01989 COQ6 Ubiquinone bios 98.3 1.7E-05 3.6E-10 79.7 16.2 59 256-319 118-186 (437)
251 PRK07236 hypothetical protein; 98.3 3.1E-06 6.6E-11 83.7 10.6 35 42-76 5-39 (386)
252 PRK06753 hypothetical protein; 98.3 1.9E-06 4E-11 84.9 8.8 35 44-78 1-35 (373)
253 PRK08294 phenol 2-monooxygenas 98.3 3.7E-05 8.1E-10 80.4 18.7 37 40-76 29-66 (634)
254 PLN02985 squalene monooxygenas 98.3 4.1E-06 8.8E-11 85.3 11.3 36 41-76 41-76 (514)
255 PRK07208 hypothetical protein; 98.3 8.2E-07 1.8E-11 90.5 6.0 45 40-84 1-45 (479)
256 PRK13512 coenzyme A disulfide 98.3 8.3E-06 1.8E-10 81.9 12.4 104 215-320 2-121 (438)
257 TIGR02032 GG-red-SF geranylger 98.3 1.2E-05 2.6E-10 76.2 12.8 98 216-317 2-149 (295)
258 COG0665 DadA Glycine/D-amino a 98.3 2.7E-05 5.9E-10 77.0 15.7 39 41-79 2-40 (387)
259 PF06039 Mqo: Malate:quinone o 98.3 5.7E-05 1.2E-09 73.1 16.8 97 256-355 182-290 (488)
260 PRK07236 hypothetical protein; 98.3 7.7E-06 1.7E-10 80.9 11.4 100 214-318 6-156 (386)
261 PRK06834 hypothetical protein; 98.3 1.6E-05 3.6E-10 80.6 14.0 99 215-318 4-158 (488)
262 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.4E-06 3.1E-11 84.3 6.0 43 43-85 1-43 (377)
263 PTZ00318 NADH dehydrogenase-li 98.2 7.6E-06 1.6E-10 81.8 11.2 106 214-320 10-129 (424)
264 PF00070 Pyr_redox: Pyridine n 98.2 2.2E-05 4.7E-10 58.4 10.5 34 45-78 1-34 (80)
265 PF07992 Pyr_redox_2: Pyridine 98.2 2.8E-06 6E-11 75.7 6.7 105 216-320 1-126 (201)
266 PRK06327 dihydrolipoamide dehy 98.2 2.1E-05 4.5E-10 79.9 13.8 98 44-190 184-286 (475)
267 TIGR03169 Nterm_to_SelD pyridi 98.2 7.6E-06 1.6E-10 80.2 9.4 97 216-320 1-111 (364)
268 PF04820 Trp_halogenase: Trypt 98.2 1.6E-05 3.5E-10 79.7 11.8 58 255-318 154-213 (454)
269 PRK05868 hypothetical protein; 98.2 1.1E-05 2.5E-10 79.1 10.5 36 43-78 1-36 (372)
270 PRK08773 2-octaprenyl-3-methyl 98.2 2.4E-05 5.3E-10 77.5 12.9 100 214-318 6-171 (392)
271 KOG2495 NADH-dehydrogenase (ub 98.2 2.4E-05 5.2E-10 74.2 11.8 97 44-189 219-330 (491)
272 PRK08244 hypothetical protein; 98.2 3.2E-05 7E-10 79.0 14.0 100 215-316 3-159 (493)
273 TIGR03219 salicylate_mono sali 98.1 1.1E-05 2.4E-10 80.6 9.7 36 44-79 1-37 (414)
274 PLN02568 polyamine oxidase 98.1 3.5E-06 7.6E-11 86.1 6.2 46 39-84 1-51 (539)
275 PRK10262 thioredoxin reductase 98.1 5.3E-05 1.1E-09 72.9 14.1 101 213-320 5-121 (321)
276 COG1635 THI4 Ribulose 1,5-bisp 98.1 5.5E-05 1.2E-09 65.5 12.3 165 214-378 30-257 (262)
277 COG1252 Ndh NADH dehydrogenase 98.1 1.3E-05 2.8E-10 77.5 9.6 99 214-320 3-115 (405)
278 PRK07333 2-octaprenyl-6-methox 98.1 3.4E-05 7.4E-10 76.8 13.1 98 216-318 3-169 (403)
279 COG2509 Uncharacterized FAD-de 98.1 3.8E-05 8.2E-10 73.7 12.4 82 233-319 150-233 (486)
280 PRK14989 nitrite reductase sub 98.1 1.4E-05 3.1E-10 85.8 10.9 99 215-320 4-117 (847)
281 KOG2820 FAD-dependent oxidored 98.1 3.1E-05 6.6E-10 71.2 11.2 38 40-77 4-41 (399)
282 PRK04965 NADH:flavorubredoxin 98.1 3.2E-05 6.9E-10 76.2 12.5 98 215-320 3-115 (377)
283 PRK11883 protoporphyrinogen ox 98.1 3.2E-06 6.9E-11 85.5 5.4 41 44-84 1-43 (451)
284 PRK06912 acoL dihydrolipoamide 98.1 3E-05 6.4E-10 78.4 12.3 97 43-189 170-269 (458)
285 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 8.9E-06 1.9E-10 79.6 8.2 36 44-79 1-36 (433)
286 PRK12779 putative bifunctional 98.1 1.5E-05 3.2E-10 86.6 10.6 93 213-318 305-407 (944)
287 PLN02268 probable polyamine ox 98.1 3.7E-06 7.9E-11 84.6 5.6 41 44-84 1-41 (435)
288 TIGR00562 proto_IX_ox protopor 98.1 3.5E-06 7.6E-11 85.5 5.5 42 43-84 2-47 (462)
289 TIGR03385 CoA_CoA_reduc CoA-di 98.1 3.1E-05 6.7E-10 77.7 12.2 97 43-189 137-234 (427)
290 COG3380 Predicted NAD/FAD-depe 98.1 4.3E-06 9.3E-11 74.4 5.2 40 44-83 2-41 (331)
291 COG0562 Glf UDP-galactopyranos 98.1 4.3E-06 9.4E-11 76.2 5.4 43 43-85 1-43 (374)
292 PLN02576 protoporphyrinogen ox 98.1 4.1E-06 8.9E-11 85.8 6.0 43 42-84 11-54 (496)
293 PF00743 FMO-like: Flavin-bind 98.1 3.6E-05 7.9E-10 78.4 12.6 138 214-356 1-193 (531)
294 PTZ00367 squalene epoxidase; P 98.1 7.9E-06 1.7E-10 83.8 7.8 35 42-76 32-66 (567)
295 COG3349 Uncharacterized conser 98.1 3.9E-06 8.5E-11 82.1 5.3 43 44-86 1-43 (485)
296 PRK12770 putative glutamate sy 98.1 1.8E-05 3.9E-10 77.1 9.8 105 211-318 15-133 (352)
297 COG1249 Lpd Pyruvate/2-oxoglut 98.1 5.2E-05 1.1E-09 75.2 13.1 99 43-190 173-274 (454)
298 TIGR02733 desat_CrtD C-3',4' d 98.1 4.2E-06 9.1E-11 85.5 5.6 42 44-85 2-43 (492)
299 PF01134 GIDA: Glucose inhibit 98.1 4.8E-05 1E-09 73.4 12.3 93 216-314 1-150 (392)
300 PLN02529 lysine-specific histo 98.1 5.8E-06 1.2E-10 86.6 6.5 46 38-83 155-200 (738)
301 TIGR02485 CobZ_N-term precorri 98.1 2.6E-05 5.6E-10 78.3 10.8 35 48-82 1-37 (432)
302 PRK07233 hypothetical protein; 98.1 4.5E-06 9.7E-11 84.0 5.4 55 255-314 198-252 (434)
303 PRK05868 hypothetical protein; 98.0 5.6E-05 1.2E-09 74.2 12.6 100 215-319 2-163 (372)
304 TIGR02374 nitri_red_nirB nitri 98.0 1.7E-05 3.6E-10 85.2 9.5 97 217-320 1-112 (785)
305 TIGR02730 carot_isom carotene 98.0 5.7E-06 1.2E-10 84.5 5.6 41 44-84 1-41 (493)
306 PRK07045 putative monooxygenas 98.0 5.3E-06 1.1E-10 82.1 5.3 38 41-78 3-40 (388)
307 PRK09853 putative selenate red 98.0 2.8E-05 6.1E-10 83.5 11.0 90 213-317 538-636 (1019)
308 PLN02463 lycopene beta cyclase 98.0 6.1E-05 1.3E-09 75.2 12.7 97 215-317 29-170 (447)
309 TIGR03143 AhpF_homolog putativ 98.0 7.3E-05 1.6E-09 77.3 13.7 99 215-320 5-118 (555)
310 PLN02661 Putative thiazole syn 98.0 0.00034 7.4E-09 66.5 16.8 166 214-379 92-326 (357)
311 PRK06416 dihydrolipoamide dehy 98.0 5.4E-05 1.2E-09 76.7 12.4 97 44-189 173-273 (462)
312 PRK07190 hypothetical protein; 98.0 7.9E-05 1.7E-09 75.6 13.5 97 215-316 6-165 (487)
313 PRK05249 soluble pyridine nucl 98.0 6.4E-05 1.4E-09 76.2 12.8 96 43-189 175-273 (461)
314 KOG2404 Fumarate reductase, fl 98.0 8.3E-05 1.8E-09 67.9 11.9 78 237-316 122-206 (477)
315 COG0492 TrxB Thioredoxin reduc 98.0 0.0003 6.4E-09 66.4 16.2 99 215-320 4-119 (305)
316 PRK10157 putative oxidoreducta 98.0 0.0001 2.2E-09 73.8 13.9 97 215-316 6-164 (428)
317 TIGR01316 gltA glutamate synth 98.0 1.7E-05 3.8E-10 79.7 8.5 93 213-319 132-234 (449)
318 PRK11749 dihydropyrimidine deh 98.0 1.7E-05 3.6E-10 80.2 8.3 92 212-317 138-239 (457)
319 PRK07818 dihydrolipoamide dehy 98.0 6.6E-05 1.4E-09 76.1 12.4 98 44-190 173-275 (466)
320 TIGR02734 crtI_fam phytoene de 98.0 6.2E-06 1.3E-10 84.6 4.9 56 255-315 219-275 (502)
321 TIGR01984 UbiH 2-polyprenyl-6- 98.0 8.2E-05 1.8E-09 73.5 12.8 97 216-317 1-163 (382)
322 TIGR01424 gluta_reduc_2 glutat 98.0 8.4E-05 1.8E-09 74.9 12.7 96 43-189 166-264 (446)
323 COG0446 HcaD Uncharacterized N 98.0 6E-05 1.3E-09 75.2 11.4 97 43-189 136-238 (415)
324 PRK12416 protoporphyrinogen ox 98.0 8.8E-06 1.9E-10 82.5 5.4 41 44-84 2-48 (463)
325 PRK06370 mercuric reductase; V 98.0 0.0001 2.3E-09 74.6 12.9 99 43-190 171-273 (463)
326 TIGR02053 MerA mercuric reduct 97.9 8.4E-05 1.8E-09 75.4 12.0 98 44-190 167-268 (463)
327 PRK07845 flavoprotein disulfid 97.9 0.00011 2.4E-09 74.4 12.7 96 44-190 178-276 (466)
328 TIGR01318 gltD_gamma_fam gluta 97.9 3.1E-05 6.8E-10 78.2 8.8 92 213-318 140-240 (467)
329 PRK06753 hypothetical protein; 97.9 9.1E-05 2E-09 72.9 11.9 98 216-318 2-154 (373)
330 TIGR02731 phytoene_desat phyto 97.9 1.1E-05 2.3E-10 81.7 5.3 40 45-84 1-40 (453)
331 PRK06116 glutathione reductase 97.9 9.8E-05 2.1E-09 74.6 12.1 96 43-189 167-266 (450)
332 PRK07538 hypothetical protein; 97.9 0.00016 3.5E-09 72.1 13.5 103 216-318 2-167 (413)
333 KOG2614 Kynurenine 3-monooxyge 97.9 0.00019 4.1E-09 68.3 12.6 36 43-78 2-37 (420)
334 KOG2853 Possible oxidoreductas 97.9 0.00011 2.3E-09 67.7 10.4 45 42-86 85-142 (509)
335 PLN02507 glutathione reductase 97.9 0.00015 3.2E-09 74.0 12.8 97 43-190 203-302 (499)
336 PRK07608 ubiquinone biosynthes 97.9 0.00019 4.2E-09 71.0 13.3 98 215-318 6-169 (388)
337 PRK08243 4-hydroxybenzoate 3-m 97.9 0.00025 5.4E-09 70.2 14.0 103 215-319 3-166 (392)
338 KOG1399 Flavin-containing mono 97.9 0.00036 7.8E-09 69.1 14.7 106 214-320 6-159 (448)
339 PRK12831 putative oxidoreducta 97.9 5.5E-05 1.2E-09 76.3 9.0 95 212-318 138-243 (464)
340 PRK07846 mycothione reductase; 97.9 0.00014 3.1E-09 73.2 11.9 95 43-189 166-263 (451)
341 PRK12837 3-ketosteroid-delta-1 97.9 2.4E-05 5.2E-10 80.1 6.3 41 43-84 7-47 (513)
342 PRK14694 putative mercuric red 97.8 0.00022 4.8E-09 72.3 13.2 95 43-190 178-275 (468)
343 TIGR01317 GOGAT_sm_gam glutama 97.8 5.8E-05 1.2E-09 76.6 8.8 92 213-318 142-243 (485)
344 PLN02852 ferredoxin-NADP+ redu 97.8 5E-05 1.1E-09 76.2 8.1 91 213-317 25-127 (491)
345 PRK06115 dihydrolipoamide dehy 97.8 0.0002 4.4E-09 72.5 12.7 98 43-189 174-277 (466)
346 PLN02676 polyamine oxidase 97.8 2.3E-05 4.9E-10 79.5 5.7 42 43-84 26-68 (487)
347 TIGR01421 gluta_reduc_1 glutat 97.8 0.00018 3.9E-09 72.5 12.1 98 43-190 166-267 (450)
348 KOG0399 Glutamate synthase [Am 97.8 0.00053 1.1E-08 72.4 15.3 90 213-316 1784-1882(2142)
349 PRK06292 dihydrolipoamide dehy 97.8 0.00025 5.3E-09 71.9 13.2 98 43-190 169-270 (460)
350 TIGR02023 BchP-ChlP geranylger 97.8 0.00038 8.2E-09 68.8 14.2 102 216-318 2-157 (388)
351 PRK08849 2-octaprenyl-3-methyl 97.8 0.00026 5.6E-09 69.9 12.9 99 216-319 5-170 (384)
352 PRK09897 hypothetical protein; 97.8 0.00034 7.4E-09 71.2 13.7 99 215-317 2-167 (534)
353 KOG1298 Squalene monooxygenase 97.8 0.00015 3.3E-09 67.8 10.0 36 40-75 42-77 (509)
354 PRK07045 putative monooxygenas 97.8 0.00033 7.2E-09 69.3 13.1 100 215-319 6-168 (388)
355 PRK07494 2-octaprenyl-6-methox 97.8 0.0003 6.6E-09 69.6 12.7 98 215-318 8-169 (388)
356 PRK08010 pyridine nucleotide-d 97.8 0.00031 6.8E-09 70.7 12.9 96 43-190 158-256 (441)
357 PRK14727 putative mercuric red 97.8 0.00034 7.5E-09 71.1 13.3 94 44-190 189-285 (479)
358 PRK12778 putative bifunctional 97.8 7.7E-05 1.7E-09 80.1 8.9 94 213-319 430-533 (752)
359 PRK12775 putative trifunctiona 97.8 7E-05 1.5E-09 82.2 8.7 93 214-318 430-532 (1006)
360 PLN02697 lycopene epsilon cycl 97.8 0.00035 7.6E-09 71.0 13.1 97 215-316 109-248 (529)
361 TIGR03452 mycothione_red mycot 97.8 0.00026 5.7E-09 71.3 12.1 95 43-189 169-266 (452)
362 PRK06467 dihydrolipoamide dehy 97.8 0.0003 6.4E-09 71.4 12.5 34 44-77 175-208 (471)
363 KOG2311 NAD/FAD-utilizing prot 97.8 0.00014 3.1E-09 69.8 9.1 35 41-75 26-60 (679)
364 PRK12810 gltD glutamate syntha 97.8 0.00011 2.4E-09 74.5 9.1 89 213-315 142-239 (471)
365 PRK05675 sdhA succinate dehydr 97.7 0.00022 4.7E-09 73.9 11.4 300 56-377 1-402 (570)
366 PTZ00052 thioredoxin reductase 97.7 0.0003 6.5E-09 71.8 12.2 94 44-189 183-279 (499)
367 TIGR01423 trypano_reduc trypan 97.7 0.0003 6.5E-09 71.3 12.1 96 43-189 187-289 (486)
368 PTZ00188 adrenodoxin reductase 97.7 0.00019 4.2E-09 71.1 10.2 91 213-317 38-139 (506)
369 PLN02328 lysine-specific histo 97.7 4.2E-05 9.1E-10 80.7 6.0 42 41-82 236-277 (808)
370 COG2072 TrkA Predicted flavopr 97.7 0.00096 2.1E-08 66.8 15.4 135 215-357 9-186 (443)
371 PLN02612 phytoene desaturase 97.7 5.3E-05 1.2E-09 78.4 6.6 44 40-83 90-133 (567)
372 TIGR02732 zeta_caro_desat caro 97.7 3.9E-05 8.4E-10 77.7 5.4 40 45-84 1-40 (474)
373 TIGR01438 TGR thioredoxin and 97.7 0.00038 8.3E-09 70.7 12.6 96 44-189 181-280 (484)
374 TIGR01790 carotene-cycl lycope 97.7 0.00041 8.9E-09 68.6 12.7 95 216-316 1-141 (388)
375 COG0644 FixC Dehydrogenases (f 97.7 0.00056 1.2E-08 67.8 13.5 97 216-316 5-152 (396)
376 PRK07538 hypothetical protein; 97.7 3.8E-05 8.2E-10 76.7 5.1 35 44-78 1-35 (413)
377 PLN02487 zeta-carotene desatur 97.7 5.8E-05 1.3E-09 77.4 6.5 42 42-83 74-115 (569)
378 PRK05732 2-octaprenyl-6-methox 97.7 0.00049 1.1E-08 68.2 13.0 99 215-318 4-171 (395)
379 PRK06996 hypothetical protein; 97.7 0.00043 9.4E-09 68.7 12.4 99 215-315 12-173 (398)
380 KOG1336 Monodehydroascorbate/f 97.7 0.00038 8.3E-09 67.4 11.3 98 43-190 213-315 (478)
381 PRK13748 putative mercuric red 97.7 0.00046 9.9E-09 71.9 12.8 95 43-190 270-367 (561)
382 PRK12814 putative NADPH-depend 97.7 0.00011 2.4E-09 77.3 8.1 91 213-317 192-291 (652)
383 PRK05335 tRNA (uracil-5-)-meth 97.7 5.6E-05 1.2E-09 73.7 5.3 35 44-78 3-37 (436)
384 PTZ00058 glutathione reductase 97.7 0.00047 1E-08 70.9 12.3 97 43-189 237-337 (561)
385 TIGR03315 Se_ygfK putative sel 97.7 0.00015 3.3E-09 78.4 8.9 90 214-318 537-635 (1012)
386 KOG0685 Flavin-containing amin 97.6 8.1E-05 1.8E-09 71.8 5.7 43 42-84 20-63 (498)
387 PRK05192 tRNA uridine 5-carbox 97.6 0.00077 1.7E-08 68.9 13.1 95 215-315 5-156 (618)
388 PRK12809 putative oxidoreducta 97.6 0.00015 3.3E-09 76.2 8.2 91 213-317 309-408 (639)
389 PF06100 Strep_67kDa_ant: Stre 97.6 0.00051 1.1E-08 67.4 11.0 90 224-318 173-276 (500)
390 TIGR03219 salicylate_mono sali 97.6 0.00056 1.2E-08 68.3 11.7 97 216-317 2-160 (414)
391 PRK12769 putative oxidoreducta 97.6 0.00016 3.5E-09 76.4 7.9 90 213-316 326-424 (654)
392 PF05834 Lycopene_cycl: Lycope 97.6 0.00076 1.6E-08 66.2 12.1 96 216-317 1-143 (374)
393 TIGR02462 pyranose_ox pyranose 97.6 0.00013 2.8E-09 74.1 6.7 39 44-82 1-39 (544)
394 PLN02546 glutathione reductase 97.6 0.00092 2E-08 68.8 12.9 97 43-190 252-352 (558)
395 PLN02927 antheraxanthin epoxid 97.6 8.8E-05 1.9E-09 76.9 5.3 36 41-76 79-114 (668)
396 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 0.0015 3.2E-08 64.7 13.7 103 214-318 2-165 (390)
397 PLN03000 amine oxidase 97.5 0.00012 2.7E-09 77.4 5.9 42 42-83 183-224 (881)
398 PRK01438 murD UDP-N-acetylmura 97.5 0.00032 7E-09 71.4 8.8 80 213-320 15-94 (480)
399 PRK11445 putative oxidoreducta 97.5 0.002 4.4E-08 62.7 14.0 99 216-318 3-159 (351)
400 KOG2852 Possible oxidoreductas 97.5 0.0017 3.6E-08 58.7 11.6 41 40-80 7-53 (380)
401 TIGR02028 ChlP geranylgeranyl 97.5 0.0023 4.9E-08 63.5 13.7 101 216-317 2-161 (398)
402 PF00732 GMC_oxred_N: GMC oxid 97.5 0.0001 2.2E-09 70.0 4.0 63 257-319 195-261 (296)
403 PTZ00153 lipoamide dehydrogena 97.5 0.001 2.2E-08 69.6 11.4 34 44-77 313-346 (659)
404 TIGR01789 lycopene_cycl lycope 97.4 0.00072 1.6E-08 66.2 9.7 94 216-318 1-140 (370)
405 TIGR01372 soxA sarcosine oxida 97.4 0.002 4.3E-08 71.2 14.1 106 214-320 163-290 (985)
406 PLN00093 geranylgeranyl diphos 97.4 0.0039 8.5E-08 62.6 15.0 104 213-317 38-200 (450)
407 PLN02976 amine oxidase 97.4 0.0002 4.2E-09 78.7 5.9 43 42-84 692-734 (1713)
408 COG0493 GltD NADPH-dependent g 97.4 0.00025 5.5E-09 70.5 5.7 89 213-315 122-219 (457)
409 KOG4254 Phytoene desaturase [C 97.4 0.00022 4.8E-09 68.2 5.0 52 41-92 12-63 (561)
410 PRK02106 choline dehydrogenase 97.4 0.00021 4.5E-09 74.2 5.3 37 40-76 2-39 (560)
411 PRK12771 putative glutamate sy 97.4 0.0006 1.3E-08 70.9 8.6 91 212-317 135-235 (564)
412 PF01946 Thi4: Thi4 family; PD 97.4 0.0031 6.7E-08 55.2 11.4 107 214-320 17-169 (230)
413 COG3573 Predicted oxidoreducta 97.3 0.00034 7.5E-09 64.3 5.6 42 42-83 4-47 (552)
414 PF13454 NAD_binding_9: FAD-NA 97.3 0.0031 6.6E-08 53.5 11.2 92 218-314 1-155 (156)
415 PF12831 FAD_oxidored: FAD dep 97.3 0.00024 5.1E-09 71.1 4.8 97 216-314 1-148 (428)
416 PRK06481 fumarate reductase fl 97.3 0.0047 1E-07 63.3 14.4 102 215-317 62-253 (506)
417 KOG1276 Protoporphyrinogen oxi 97.3 0.0003 6.5E-09 67.0 5.1 40 43-82 11-52 (491)
418 PRK13984 putative oxidoreducta 97.3 0.0008 1.7E-08 70.6 8.6 90 213-316 282-380 (604)
419 KOG1335 Dihydrolipoamide dehyd 97.3 0.002 4.4E-08 60.5 9.9 144 43-237 211-367 (506)
420 PRK01438 murD UDP-N-acetylmura 97.3 0.0021 4.5E-08 65.6 11.0 33 43-75 16-48 (480)
421 TIGR00136 gidA glucose-inhibit 97.2 0.0055 1.2E-07 62.8 13.4 96 216-317 2-155 (617)
422 PRK06567 putative bifunctional 97.2 0.001 2.3E-08 71.0 8.5 35 212-246 381-415 (1028)
423 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00037 8E-09 74.8 5.1 34 44-77 1-36 (765)
424 COG1148 HdrA Heterodisulfide r 97.2 0.0012 2.5E-08 64.0 7.3 80 214-293 124-216 (622)
425 KOG2844 Dimethylglycine dehydr 97.2 0.0068 1.5E-07 61.2 12.8 67 241-316 175-243 (856)
426 PLN02985 squalene monooxygenas 97.1 0.01 2.2E-07 60.8 14.3 34 214-247 43-76 (514)
427 KOG2960 Protein involved in th 97.1 0.00027 5.8E-09 60.7 2.1 38 43-80 76-115 (328)
428 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.0019 4.2E-08 63.5 8.2 34 216-249 2-35 (433)
429 PLN02927 antheraxanthin epoxid 97.1 0.007 1.5E-07 63.1 12.6 36 212-247 79-114 (668)
430 COG3380 Predicted NAD/FAD-depe 97.0 0.0025 5.5E-08 57.2 7.2 96 216-316 3-160 (331)
431 TIGR01812 sdhA_frdA_Gneg succi 97.0 0.017 3.6E-07 60.2 14.5 52 263-314 137-189 (566)
432 KOG0404 Thioredoxin reductase 97.0 0.0078 1.7E-07 52.4 9.6 99 214-319 8-127 (322)
433 PRK07573 sdhA succinate dehydr 96.9 0.018 3.9E-07 60.6 14.2 51 264-314 179-230 (640)
434 TIGR03862 flavo_PP4765 unchara 96.9 0.024 5.2E-07 55.1 13.9 119 66-188 1-141 (376)
435 PRK06452 sdhA succinate dehydr 96.9 0.02 4.4E-07 59.5 14.3 53 261-313 142-195 (566)
436 TIGR01813 flavo_cyto_c flavocy 96.9 0.021 4.6E-07 57.5 14.0 56 259-315 134-191 (439)
437 PRK07233 hypothetical protein; 96.8 0.019 4.1E-07 57.7 12.9 34 216-249 1-34 (434)
438 TIGR03364 HpnW_proposed FAD de 96.8 0.017 3.7E-07 56.6 12.0 32 216-247 2-33 (365)
439 COG2303 BetA Choline dehydroge 96.8 0.0016 3.5E-08 66.9 4.8 60 261-320 209-270 (542)
440 PRK08401 L-aspartate oxidase; 96.7 0.024 5.2E-07 57.5 13.0 33 215-247 2-34 (466)
441 KOG0042 Glycerol-3-phosphate d 96.7 0.00087 1.9E-08 65.7 2.0 42 42-83 66-107 (680)
442 COG1251 NirB NAD(P)H-nitrite r 96.7 0.011 2.3E-07 60.7 9.7 100 215-321 4-118 (793)
443 TIGR01811 sdhA_Bsu succinate d 96.7 0.038 8.3E-07 57.8 14.2 31 217-247 1-31 (603)
444 PRK05945 sdhA succinate dehydr 96.6 0.032 6.8E-07 58.2 13.5 56 261-316 141-197 (575)
445 COG0445 GidA Flavin-dependent 96.6 0.0047 1E-07 61.1 6.6 93 215-313 5-155 (621)
446 PRK07803 sdhA succinate dehydr 96.6 0.042 9.1E-07 57.8 14.2 45 270-314 166-211 (626)
447 PF13450 NAD_binding_8: NAD(P) 96.6 0.0036 7.8E-08 44.6 4.4 32 219-250 1-32 (68)
448 TIGR00551 nadB L-aspartate oxi 96.6 0.041 8.8E-07 56.2 13.7 55 259-315 132-188 (488)
449 KOG1346 Programmed cell death 96.6 0.011 2.4E-07 56.2 8.5 97 42-189 346-450 (659)
450 PF13434 K_oxygenase: L-lysine 96.6 0.012 2.7E-07 56.7 9.2 104 216-320 4-163 (341)
451 PRK06854 adenylylsulfate reduc 96.6 0.05 1.1E-06 57.0 14.3 51 263-313 140-192 (608)
452 TIGR01810 betA choline dehydro 96.5 0.0023 5.1E-08 66.0 4.3 32 45-76 1-33 (532)
453 PRK06263 sdhA succinate dehydr 96.5 0.049 1.1E-06 56.4 13.5 58 257-314 136-195 (543)
454 PRK06069 sdhA succinate dehydr 96.5 0.058 1.3E-06 56.3 14.1 48 268-315 151-199 (577)
455 PLN02785 Protein HOTHEAD 96.4 0.0033 7.1E-08 65.2 4.7 34 42-76 54-87 (587)
456 KOG2820 FAD-dependent oxidored 96.4 0.047 1E-06 50.9 11.4 56 258-318 156-214 (399)
457 PRK08255 salicylyl-CoA 5-hydro 96.4 0.011 2.4E-07 63.6 8.7 34 216-249 2-37 (765)
458 PRK08626 fumarate reductase fl 96.4 0.067 1.4E-06 56.5 13.9 51 263-313 166-217 (657)
459 PRK08275 putative oxidoreducta 96.4 0.074 1.6E-06 55.2 14.0 61 256-316 138-200 (554)
460 PRK06175 L-aspartate oxidase; 96.3 0.067 1.4E-06 53.7 13.2 58 257-316 130-189 (433)
461 PTZ00139 Succinate dehydrogena 96.3 0.081 1.8E-06 55.5 14.1 54 260-313 171-226 (617)
462 KOG2665 Predicted FAD-dependen 96.3 0.0039 8.5E-08 57.1 3.5 39 41-79 46-86 (453)
463 PRK14106 murD UDP-N-acetylmura 96.3 0.052 1.1E-06 54.9 12.1 33 43-75 5-37 (450)
464 PRK07804 L-aspartate oxidase; 96.2 0.086 1.9E-06 54.5 13.6 33 215-247 17-49 (541)
465 TIGR01176 fum_red_Fp fumarate 96.2 0.12 2.6E-06 53.8 14.5 46 268-313 146-192 (580)
466 KOG2614 Kynurenine 3-monooxyge 96.1 0.033 7.1E-07 53.5 9.0 35 215-249 3-37 (420)
467 PTZ00367 squalene epoxidase; P 96.1 0.049 1.1E-06 56.3 11.0 34 214-247 33-66 (567)
468 PRK09231 fumarate reductase fl 96.0 0.14 3.1E-06 53.4 14.1 45 334-378 359-412 (582)
469 KOG3855 Monooxygenase involved 96.0 0.0089 1.9E-07 57.0 4.7 40 41-80 34-79 (481)
470 PLN00128 Succinate dehydrogena 96.0 0.14 3.1E-06 53.8 13.8 52 263-314 195-248 (635)
471 KOG1238 Glucose dehydrogenase/ 95.9 0.009 2E-07 60.5 4.6 37 40-76 54-91 (623)
472 PRK08958 sdhA succinate dehydr 95.9 0.16 3.5E-06 53.1 14.1 50 265-314 153-204 (588)
473 PLN02815 L-aspartate oxidase 95.9 0.12 2.7E-06 53.7 12.9 46 268-313 169-219 (594)
474 COG3634 AhpF Alkyl hydroperoxi 95.8 0.026 5.7E-07 52.6 6.7 98 213-315 210-324 (520)
475 PRK08071 L-aspartate oxidase; 95.8 0.13 2.8E-06 52.8 12.7 46 334-379 333-387 (510)
476 PRK08641 sdhA succinate dehydr 95.8 0.22 4.8E-06 52.1 14.4 33 215-247 4-36 (589)
477 COG4529 Uncharacterized protei 95.7 0.15 3.3E-06 50.2 11.7 35 215-249 2-39 (474)
478 PRK08205 sdhA succinate dehydr 95.6 0.22 4.8E-06 52.0 13.8 60 257-316 142-206 (583)
479 PF00996 GDI: GDP dissociation 95.6 0.014 3.1E-07 57.6 4.6 46 40-85 1-46 (438)
480 PRK14106 murD UDP-N-acetylmura 95.6 0.044 9.5E-07 55.4 8.1 80 214-320 5-84 (450)
481 TIGR02485 CobZ_N-term precorri 95.6 0.18 3.9E-06 50.7 12.4 53 258-314 126-181 (432)
482 KOG2311 NAD/FAD-utilizing prot 95.5 0.069 1.5E-06 52.1 8.6 32 215-246 29-60 (679)
483 PRK05335 tRNA (uracil-5-)-meth 95.4 0.022 4.8E-07 55.9 5.1 35 215-249 3-37 (436)
484 TIGR03862 flavo_PP4765 unchara 95.2 0.18 3.9E-06 49.1 10.5 83 227-316 57-141 (376)
485 COG0029 NadB Aspartate oxidase 95.2 0.13 2.8E-06 50.7 9.3 33 216-249 9-41 (518)
486 PRK09077 L-aspartate oxidase; 95.2 0.38 8.2E-06 49.7 13.5 46 334-379 354-408 (536)
487 PRK12835 3-ketosteroid-delta-1 95.0 0.37 8.1E-06 50.3 13.0 49 264-314 222-273 (584)
488 COG1206 Gid NAD(FAD)-utilizing 95.0 0.027 5.8E-07 52.2 3.9 34 44-77 4-37 (439)
489 PRK06475 salicylate hydroxylas 95.0 0.045 9.8E-07 54.3 5.9 35 215-249 3-37 (400)
490 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.032 6.9E-07 47.3 4.1 31 45-75 1-31 (157)
491 PRK07364 2-octaprenyl-6-methox 94.9 0.049 1.1E-06 54.4 6.2 36 214-249 18-53 (415)
492 PF13241 NAD_binding_7: Putati 94.9 0.024 5.3E-07 44.1 3.0 34 42-75 6-39 (103)
493 PRK12844 3-ketosteroid-delta-1 94.9 0.57 1.2E-05 48.7 13.8 55 260-316 213-269 (557)
494 PRK06184 hypothetical protein; 94.8 0.046 1E-06 56.1 5.8 36 215-250 4-39 (502)
495 PF01593 Amino_oxidase: Flavin 94.8 0.026 5.6E-07 56.4 3.8 48 262-314 216-263 (450)
496 TIGR01470 cysG_Nterm siroheme 94.8 0.051 1.1E-06 48.2 5.0 33 43-75 9-41 (205)
497 PRK08163 salicylate hydroxylas 94.7 0.053 1.1E-06 53.8 5.7 37 214-250 4-40 (396)
498 PRK07395 L-aspartate oxidase; 94.7 0.29 6.2E-06 50.7 11.1 52 261-314 140-195 (553)
499 KOG0029 Amine oxidase [Seconda 94.7 0.041 8.9E-07 55.7 4.8 38 213-250 14-51 (501)
500 PRK06847 hypothetical protein; 94.7 0.064 1.4E-06 52.7 6.1 36 214-249 4-39 (375)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=8.5e-80 Score=599.34 Aligned_cols=428 Identities=52% Similarity=0.819 Sum_probs=396.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
+.+||++|||+||||..||.++++.|.+|++||+...+||+|+|.||+|+|.+++.+..++...+....+|+......++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 45799999999999999999999999999999997799999999999999999999999888776533678887766899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~ 200 (477)
|.++..+++...+.+......++++++|+++.|++.+++++++.|... +.+++.++++|||||++|..+|..+.++..
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~ 159 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPRIPPGPGIDGAR 159 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCcCCCCCCCCCCe
Confidence 999999999988888888889999999999999999999999999866 347999999999999999988877777888
Q ss_pred EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
++++++.+.+.+.|++++|||||++|+|+|..++++|.+||++++.++++|.+|+++++.+.+.|++.|+.+++++.+++
T Consensus 160 ~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~ 239 (454)
T COG1249 160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239 (454)
T ss_pred EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence 99998877777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (477)
Q Consensus 281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~ 360 (477)
++..++++.+++++. .+..+++|.+++|+|++||++.+.++++|++++++|+|.||+.++|++|+|||+|||++.|+
T Consensus 240 ~~~~~~~v~v~~~~g---~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~ 316 (454)
T COG1249 240 VEKKDDGVLVTLEDG---EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM 316 (454)
T ss_pred EEecCCeEEEEEecC---CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc
Confidence 988777777777632 22289999999999999999999999999999999999999778899999999999999999
Q ss_pred chhHHHHHHHHHHHHHcC-CCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 361 LAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
++|.|.+||++||+||++ .....++..+|+++|++|++++||+||+|+++.+++|++..+++....++....++.||+|
T Consensus 317 Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~K 396 (454)
T COG1249 317 LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVK 396 (454)
T ss_pred cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEE
Confidence 999999999999999997 4556789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+++|++|++|||+|++|++|+||||++++|+.+.
T Consensus 397 lv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g 430 (454)
T COG1249 397 LVVDKETGRILGAHIVGPGASELINEIALAIEMG 430 (454)
T ss_pred EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999854
No 2
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.6e-80 Score=558.22 Aligned_cols=439 Identities=69% Similarity=1.084 Sum_probs=421.3
Q ss_pred cCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHh-hhhhCC
Q 011787 33 LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-SFASHG 111 (477)
Q Consensus 33 ~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-~~~~~g 111 (477)
+.|.+.....+||++|||+||+|..||.++++.|++.+.||++..+||+|++.||+||+.|+..++.|+...+ .++..|
T Consensus 29 ~~r~fa~~~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG 108 (506)
T KOG1335|consen 29 SKRSFASSANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG 108 (506)
T ss_pred hhhhhhccCccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence 3444555556899999999999999999999999999999999999999999999999999999999998887 788999
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787 112 VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL 191 (477)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~ 191 (477)
+......++.+.++..++..+..+...++..+++++|+++.|...+++++.+.+...||+...+.++++|+||||.-.++
T Consensus 109 i~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~ 188 (506)
T KOG1335|consen 109 IDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF 188 (506)
T ss_pred ccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC
Confidence 99988899999999999999999999999999999999999999999999999999999889999999999999998888
Q ss_pred CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (477)
Q Consensus 192 ~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 271 (477)
||...++..+.++..++.+.+.|++++|+|+|.+|+|++..+.++|.+||+++-.+.+.+.+|.++++..++.|.++|+.
T Consensus 189 PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgik 268 (506)
T KOG1335|consen 189 PGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIK 268 (506)
T ss_pred CCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787 272 FMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy 350 (477)
|++++.|+..+.+++ .+.+++++..++..++++||.+++++|++|.+..|++++.|++.|.+|++.||..++|.+|+||
T Consensus 269 F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~ 348 (506)
T KOG1335|consen 269 FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIY 348 (506)
T ss_pred eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceE
Confidence 999999999988766 7888888888888899999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (477)
Q Consensus 351 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (477)
++||+..+|++++-|..||..+.+.|.+...+++|..+|.+.|++|+++|||+||+++++.|++|++++++|+.+.|+..
T Consensus 349 ~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRakt 428 (506)
T KOG1335|consen 349 AIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKT 428 (506)
T ss_pred EecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccchhhc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH 471 (477)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~ 471 (477)
..+.+||+|+++|++|++|||+|++|++|+|||+++++||+
T Consensus 429 n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAie 469 (506)
T KOG1335|consen 429 NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIE 469 (506)
T ss_pred cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997
No 3
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4e-72 Score=562.26 Aligned_cols=431 Identities=45% Similarity=0.723 Sum_probs=387.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
|+.+|||+||||||||++||..|++.|++|+|||+++.+||+|++.+|+|++.++..+..++... .+..+|+......+
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~-~~~~~g~~~~~~~~ 79 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKI 79 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHh-hhhhcCcccCCCCc
Confidence 34569999999999999999999999999999999778999999999999999998888777664 35667887766788
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~ 199 (477)
+|..+..+.+.....+...+...+++.+|+++.+++.+++++.+.|...+|+..++.||+||||||++|..+|+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~ 159 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDP 159 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCC
Confidence 99999999999988888888888899999999999999999998888766644679999999999999976665554455
Q ss_pred eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.++++.+...+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.|+++ ++++++++++
T Consensus 160 ~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~ 238 (471)
T PRK06467 160 RIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVT 238 (471)
T ss_pred cEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEE
Confidence 688888888888889999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
+++..++++.+++.+. .++.+++++|.|++++|++||++.+.++.+|++++++|+|.||+++||++|+|||+|||++.|
T Consensus 239 ~i~~~~~~~~v~~~~~-~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~ 317 (471)
T PRK06467 239 AVEAKEDGIYVTMEGK-KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP 317 (471)
T ss_pred EEEEcCCEEEEEEEeC-CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc
Confidence 9987766766665421 122467999999999999999997767888999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
.+++.|..||+.||+||++...++++...|+++|++|+++++|+||+||+..|+++.+..+++....++...++++||+|
T Consensus 318 ~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 397 (471)
T PRK06467 318 MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTK 397 (471)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEE
Confidence 99999999999999999987777888899999999999999999999999999999999999988888877778899999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 398 li~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~ 431 (471)
T PRK06467 398 LIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMG 431 (471)
T ss_pred EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999754
No 4
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.9e-72 Score=559.23 Aligned_cols=429 Identities=56% Similarity=0.942 Sum_probs=384.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHh-hhhhCCccccccccCh
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-SFASHGVKFSSVEVDL 121 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~ 121 (477)
+|||+||||||||++||..+++.|++|+|||+++.+||+|++.+|+|+|.++.....++.... .+..+|+.. ...++|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence 599999999999999999999999999999987889999999999999999998887765543 345667754 347899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~ 201 (477)
.++..+.+..+..+...+...+++.+++++.+++.+.+++++.|...+|+..+++||+||||||++|+.+|++..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~ 161 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRI 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 99999999998888888888888899999999999888888888777765457999999999999998788876566678
Q ss_pred ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
+++.+...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+++.|++.||+++++++++++
T Consensus 162 ~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 241 (466)
T PRK06115 162 IDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGA 241 (466)
T ss_pred ECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEE
Confidence 88888887777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~ 361 (477)
+.+++++.+.+....+++++.+++|.|++++|++||++.+.++..++..+++| +.||+++||++|+|||+|||++.|.+
T Consensus 242 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~l 320 (466)
T PRK06115 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPML 320 (466)
T ss_pred EEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCccc
Confidence 87666666665433334557899999999999999999777788889888766 77999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEE
Q 011787 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (477)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (477)
++.|.+||++||+||++.....++..+|.++|++|+++++|+||+||+..|+++.++.+++....++.+.++++||+|++
T Consensus 321 a~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv 400 (466)
T PRK06115 321 AHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKIL 400 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEE
Confidence 99999999999999998766678889999999999999999999999999999999999999999988888888999999
Q ss_pred EECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 442 AEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 442 ~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+|++|++|||+|++|+++.|+|+.+++||..+
T Consensus 401 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 432 (466)
T PRK06115 401 ADARTDEVLGVHMVGPSVSEMIGEFCVAMEFS 432 (466)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999865
No 5
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-69 Score=543.31 Aligned_cols=428 Identities=40% Similarity=0.670 Sum_probs=377.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
.+|||+||||||||++||.+|++.|++|+|||+ ..+||+|.+.+|+|++.++.....++........+|+. ....++|
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~ 80 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDY 80 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCH
Confidence 469999999999999999999999999999998 68999999999999999988777776665555566775 3456899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~ 201 (477)
..+..+.++..+.........++..+|+.+.+.+.+++.+.+.+...+|+..+++||+||||||++|..+|+.+.. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~-~~v 159 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS-ENV 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCC-CcE
Confidence 9999998888877777777777778999999999999999998887776556899999999999999877876432 346
Q ss_pred ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
++.++.......+++++|||+|++|+|+|..|++.|.+|+++++.++++|.+|+++...+++.|+++||+++++++|+++
T Consensus 160 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i 239 (466)
T PRK07818 160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESI 239 (466)
T ss_pred EchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence 67766555556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~ 361 (477)
+.+++.+.+.+.. .+++..++++|.|++|+|++||++.+.+++.|+.++++|+|.||+++||++|+|||+|||++.+++
T Consensus 240 ~~~~~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l 318 (466)
T PRK07818 240 DDNGSKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQL 318 (466)
T ss_pred EEeCCeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCccc
Confidence 8766666555532 223346899999999999999998776788999998889999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHcCCCC-CC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 362 AHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
++.|..||++||.||++... .+ ++..+|.++|++|+++++|+||+||+..|+++.+..++++...++...++++||+|
T Consensus 319 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~K 398 (466)
T PRK07818 319 AHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVK 398 (466)
T ss_pred HhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEE
Confidence 99999999999999998653 34 77889999999999999999999999999999999999999899888888899999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 399 lv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~ 432 (466)
T PRK07818 399 LVADAKYGELLGGHLIGPDVSELLPELTLAQKWD 432 (466)
T ss_pred EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999865
No 6
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.5e-69 Score=544.25 Aligned_cols=428 Identities=32% Similarity=0.533 Sum_probs=379.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
++.+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+...........+. ....+
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR-VKLRI 80 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC-CcCcc
Confidence 45579999999999999999999999999999999889999999999999998877666654433211111111 12357
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~ 199 (477)
++.++..+.+...+.+...+...+++.+++++.+++.+++.+.+.+...+|....+.||+||||||++|..+|..+....
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~ 160 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHP 160 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCC
Confidence 89999999988888888888888889999999999999999999888777744579999999999999976665555567
Q ss_pred eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+.+.++++||+++++++++
T Consensus 161 ~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~ 240 (461)
T PRK05249 161 RIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVE 240 (461)
T ss_pred eEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEE
Confidence 78888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
+++.+++++.+++. ++.++++|.|++|+|++||+..+.++..++.++++|++.||+++||+.|+|||+|||++.+
T Consensus 241 ~i~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~ 315 (461)
T PRK05249 241 KVEGGDDGVIVHLK-----SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315 (461)
T ss_pred EEEEeCCeEEEEEC-----CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc
Confidence 99876666666553 3457999999999999999987667888999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
.+++.|..||++||.||++.....++..+|+++|+.|+++++|+||+||+..|+++.+..+++....++...++++||+|
T Consensus 316 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 395 (461)
T PRK05249 316 SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLK 395 (461)
T ss_pred ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEE
Confidence 99999999999999999987666788899999999999999999999999999999999999998888888888899999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus 396 lv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 429 (461)
T PRK05249 396 ILFHRETLEILGVHCFGERATEIIHIGQAIMEQK 429 (461)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999854
No 7
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.6e-68 Score=537.89 Aligned_cols=430 Identities=54% Similarity=0.902 Sum_probs=383.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~ 114 (477)
..+||++||||||||++||.++++.|.+|+|||+ ...+||+|.+.+|+|++.++.....+....+.+..+|+..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 3469999999999999999999999999999998 3679999999999999999888888877766666778876
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec----CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS----PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
....++|..+..+.+.....+...+...++..+++++.+++.+++ ...+.+...++ .+++||+||||||++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSEPRH 159 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCCCCC
Confidence 666789999999999998888888888899999999999999887 44555543333 589999999999999977
Q ss_pred CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv 270 (477)
+|+.+.+...++++++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||
T Consensus 160 ~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi 239 (475)
T PRK06327 160 LPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL 239 (475)
T ss_pred CCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCc
Confidence 77766556678888888877778999999999999999999999999999999999999998999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy 350 (477)
+++++++|++++.+++++.+.+.+. +++..++++|.+++++|++|++..+.++.+++.++++|+|.||+++||++|+||
T Consensus 240 ~i~~~~~v~~i~~~~~~v~v~~~~~-~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 318 (475)
T PRK06327 240 DIHLGVKIGEIKTGGKGVSVAYTDA-DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVY 318 (475)
T ss_pred EEEeCcEEEEEEEcCCEEEEEEEeC-CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEE
Confidence 9999999999987777766665431 233367999999999999999987667888999999999999999999999999
Q ss_pred EecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (477)
Q Consensus 351 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (477)
|+|||++.|.+++.|..||+.||.||++...++++..+|+++|++|+++++|+||++|+..|+++.+..++++...++.+
T Consensus 319 A~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~ 398 (475)
T PRK06327 319 AIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALA 398 (475)
T ss_pred EEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhh
Confidence 99999998999999999999999999987666778889999999999999999999999999999999999998888888
Q ss_pred cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
.+++.||+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 399 ~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 441 (475)
T PRK06327 399 MGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFK 441 (475)
T ss_pred cCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 8888999999999999999999999999999999999999864
No 8
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.6e-68 Score=537.79 Aligned_cols=423 Identities=31% Similarity=0.481 Sum_probs=371.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec---------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g 111 (477)
..+||++||||||||++||..|++.|++|+|||+ .+.+||+|++.||+|+|.++..+..++...+ ...+|
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~~G 101 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKNYG 101 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHhcC
Confidence 4469999999999999999999999999999996 3579999999999999999998888776554 46677
Q ss_pred cccc-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 112 VKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
+... ...++|.++..+.......+...+...+...+++++.+.+.+++++.+.|.+.+|+...+.||+||||||++|..
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~ 181 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR 181 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC
Confidence 7653 357899999999888888888888888899999999999999999999999888755578999999999999854
Q ss_pred C--CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787 191 L--PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (477)
Q Consensus 191 ~--~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (477)
+ |+.+ ..++.++...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+|+++.+.+++.|+++
T Consensus 182 p~ipG~~----~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 257 (499)
T PLN02507 182 PNIPGKE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGR 257 (499)
T ss_pred CCCCCcc----ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhC
Confidence 3 4422 245777777777779999999999999999999999999999999999999899999999999999999
Q ss_pred CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (477)
Q Consensus 269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~ 348 (477)
||+++++++|++++.+++++.+.+. +++++++|.|++++|++||+..+.++.+|++++++|+|.||+++||++||
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~ 332 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITD-----HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPS 332 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEEC-----CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCC
Confidence 9999999999999876666666543 45689999999999999999987678899999988999999999999999
Q ss_pred eEEecccCCCCCchhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHc-CCCEEEEEEecCccc
Q 011787 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVEYRVGKFPFLANS 426 (477)
Q Consensus 349 vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ 426 (477)
|||+|||++.+.+++.|.+||+++|+||++... ..++..+|.++|+.|+++++|+||+||+.. +.++.+...++....
T Consensus 333 IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~ 412 (499)
T PLN02507 333 IWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMK 412 (499)
T ss_pred EEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCccc
Confidence 999999999899999999999999999987543 356778899999999999999999999987 688888887777666
Q ss_pred cchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 427 RAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 427 ~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
++.....+++|+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 413 ~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~ 459 (499)
T PLN02507 413 NTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCG 459 (499)
T ss_pred cccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 65554557899999999999999999999999999999999999854
No 9
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-68 Score=538.16 Aligned_cols=426 Identities=50% Similarity=0.798 Sum_probs=381.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..||++||||||||++||..|++.|++|+|+|++. +||+|.+.+|+|++.++..+..++.... ...+|+......++|
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAENVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCCCccCH
Confidence 35899999999999999999999999999999965 9999999999999999988877766554 456676654556899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~ 201 (477)
..+..+.+...+.+...+...+++.+++++.+++.+++++.+.+...++. ..+.||+||||||++|..+|+.+.++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~pg~~~~~~~v 159 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 99999999988888777888888899999999999999998888754432 67999999999999998788876666678
Q ss_pred ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
++.++...+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+++++.+.+.+.++++||+++++++++++
T Consensus 160 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 160 WTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred EcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 88888888777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~ 361 (477)
+.+++.+.+.+.+ .++.+++++|.|++|+|++|++..+.++..|+.++ +|++.||+++||++|+|||+|||++.+.+
T Consensus 240 ~~~~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~~~~ 316 (462)
T PRK06416 240 EQTDDGVTVTLED--GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPML 316 (462)
T ss_pred EEeCCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCCcch
Confidence 8776666665542 12236799999999999999999866678899888 79999999999999999999999998899
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEE
Q 011787 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (477)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (477)
++.|..||+.+|+||++....+++..+|.+.|++|+++++|+||+||+..|+++.+..+++....++.+.+++++++|++
T Consensus 317 ~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli 396 (462)
T PRK06416 317 AHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLI 396 (462)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEE
Confidence 99999999999999998776677888999999999999999999999999999999999888888888777889999999
Q ss_pred EECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 442 AEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 442 ~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+|++|++|||+|++|+++.|+||.+++||..+
T Consensus 397 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 428 (462)
T PRK06416 397 FDKKDGEVLGAHMVGARASELIQEAQLAINWE 428 (462)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999854
No 10
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.6e-68 Score=534.15 Aligned_cols=417 Identities=30% Similarity=0.499 Sum_probs=370.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
+|||+||||||||++||..+++.|++|+|+|+ +.+||+|.+.+|+|+|.++..+..++...+ ...+|+......++|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCCCCcCHH
Confidence 58999999999999999999999999999999 689999999999999999988888766543 4667776666688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCCce
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKR 200 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~~~ 200 (477)
.+..+.++....+...+...+++.+++++.+++.+++++.+.+. .+| ..+.||+||||||++|..+ |+.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~~p~i~G~~----~ 152 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQKPNLPGHE----L 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCCCCCCCCcc----c
Confidence 99999999999988888888999999999999999998887775 344 5799999999999998543 3322 2
Q ss_pred EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
.+++++...+...+++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++.+++
T Consensus 153 ~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 153 GITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred eechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45667777777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (477)
Q Consensus 281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~ 360 (477)
++..++++.+++. +++++++|.+++|+|++||++.+.++..|++++++|+|.||+++||++|||||+|||++.+.
T Consensus 233 i~~~~~~~~v~~~-----~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 307 (446)
T TIGR01424 233 ITKTDDGLKVTLS-----HGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN 307 (446)
T ss_pred EEEcCCeEEEEEc-----CCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc
Confidence 9876666666553 45689999999999999999877678899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcC-CCEEEEEEecCccccchhcCCCceEE
Q 011787 361 LAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELG-VEYRVGKFPFLANSRAKAIDDAEGIV 438 (477)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (477)
+++.|.+||+++|+||++.. .++++..+|+++|+.|+++++|+||+||+..+ +++.+...++....++...+.++||+
T Consensus 308 l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (446)
T TIGR01424 308 LTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLM 387 (446)
T ss_pred chhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEE
Confidence 99999999999999999754 45778899999999999999999999999984 99999988887776666666778999
Q ss_pred EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus 388 kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 422 (446)
T TIGR01424 388 KLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMG 422 (446)
T ss_pred EEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999864
No 11
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=9.9e-69 Score=534.30 Aligned_cols=417 Identities=31% Similarity=0.501 Sum_probs=364.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
+||++||||||+|.+||..+ .|.+|+|||+ +.+||+|+|.||+|+|.++..+..++...+ ...+|+......++|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIRE-AARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHhCCccCCCCcCCHH
Confidence 38999999999999998764 5999999998 689999999999999999999888876654 4567776555578999
Q ss_pred HHHHHHHHHHHHHHHH-HHHH-hhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787 123 AMMAQKDKAVSNLTRG-IEGL-FKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~ 200 (477)
++..+.+...+.+... .... +++.+++++.|++.+++++.+.+. +| ..++||+||||||++|+.+|..+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~--~g--~~~~~d~lViATGs~p~~p~i~g~~~~~ 152 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG--DG--EEITADQVVIAAGSRPVIPPVIADSGVR 152 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC--CC--CEEEeCEEEEcCCCCCCCCCCCCcCCcc
Confidence 9999998888887553 4444 778899999999999987776663 45 5799999999999999655433333456
Q ss_pred EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
+++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+ +.|+++++++++++
T Consensus 153 ~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~ 231 (451)
T PRK07846 153 YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVG 231 (451)
T ss_pred EEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence 78888888888889999999999999999999999999999999999999999999988877655 56899999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (477)
Q Consensus 281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~ 360 (477)
++.+++++.+.+. +++++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++|||||+|||++.+.
T Consensus 232 i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~ 306 (451)
T PRK07846 232 VSQDGSGVTLRLD-----DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ 306 (451)
T ss_pred EEEcCCEEEEEEC-----CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc
Confidence 9877666666553 45689999999999999999987778889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHcCCC--CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787 361 LAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV 438 (477)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (477)
+++.|.+||+++|+||++.. ...++..+|+++|++|+++++|+||+||+..|+++.+..+++....++...++++||+
T Consensus 307 l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 386 (451)
T PRK07846 307 LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFV 386 (451)
T ss_pred ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEE
Confidence 99999999999999999752 3467888999999999999999999999999999999999999888877777788999
Q ss_pred EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 387 Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 421 (451)
T PRK07846 387 KLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFG 421 (451)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999865
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.6e-68 Score=535.93 Aligned_cols=426 Identities=35% Similarity=0.565 Sum_probs=374.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc-cc
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SV 117 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~-~~ 117 (477)
+|+.+|||+||||||||++||..|++.|++|+|||+ ..+||+|++.+|+|+|.++..+..++.... ...+|+... ..
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~ 78 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIER-GLLGGTCVNTGCVPTKTLIASARAAHLARR-AAEYGVSVGGPV 78 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CccCCceeccccCcHHHHHHHHHHHHHHHH-HHhcCcccCccC
Confidence 356679999999999999999999999999999998 589999999999999999988887776654 355677643 25
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI 196 (477)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~ 196 (477)
.++|..+..+.+.....+...+...+++. +++++.++..+++.+.+.+ ++ .++.||+||||||++|..++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCCCCCCCC
Confidence 78999999999888887777777888887 9999999998888777766 34 579999999999999964432223
Q ss_pred CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (477)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 276 (477)
+...+++.++.......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~ 233 (463)
T PRK06370 154 DEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNA 233 (463)
T ss_pred CcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCC
Confidence 34567888888777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (477)
Q Consensus 277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~ 356 (477)
++.+++.+++++.+.+.. .+++.++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|+|||+|||+
T Consensus 234 ~V~~i~~~~~~~~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~ 311 (463)
T PRK06370 234 ECIRVERDGDGIAVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCN 311 (463)
T ss_pred EEEEEEEcCCEEEEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecC
Confidence 999998776665555432 123468999999999999999986657888999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787 357 PGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (477)
+.+.+++.|..||++||+||++. ..++++..+|+++|++|+++++|+||+||+..|+++.+..+++....++...++++
T Consensus 312 ~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
T PRK06370 312 GRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQ 391 (463)
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCC
Confidence 99999999999999999999975 45577888999999999999999999999999999999999999888887767789
Q ss_pred eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
||+|+++|++|++|||+|++|+++.|+|+.+++||..+
T Consensus 392 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 429 (463)
T PRK06370 392 GFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAG 429 (463)
T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999854
No 13
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.1e-68 Score=535.15 Aligned_cols=420 Identities=31% Similarity=0.500 Sum_probs=369.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
+.+|||+||||||||++||..|+++|++|+|||+ ..+||+|.+.+|+|++.++......+........+|+......++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~-~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEA-KRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec-cchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 3469999999999999999999999999999999 589999999999999999888877766555345567765556789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~ 200 (477)
|..+..+.++.+..+...+...+.+.+++++.+++.+++.+.+.+ ++ .++.||+||||||++|..++..+ ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~~p~i~g--~~~ 153 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPSIPDIPG--AEY 153 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCC--cce
Confidence 999999988888888888888888899999999999998876666 45 67999999999999985443211 124
Q ss_pred EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
++++++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||+++++++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 154 GITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred eEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 67777777777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 281 VDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 281 i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
++.++++ +.+.+. +++++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++.+
T Consensus 234 i~~~~~g~~~v~~~-----~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~ 308 (450)
T PRK06116 234 VEKNADGSLTLTLE-----DGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV 308 (450)
T ss_pred EEEcCCceEEEEEc-----CCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc
Confidence 9876544 555543 4568999999999999999997767888999999999999999999999999999999888
Q ss_pred CchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCccccchhcCCCc
Q 011787 360 MLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 435 (477)
.+++.|.+||+.||+||++... ..++..+|+++|++|+++++|+||+||++.+.+ +.+...++....++...++++
T Consensus 309 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (450)
T PRK06116 309 ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQP 388 (450)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCc
Confidence 9999999999999999997543 467889999999999999999999999999887 888888888777777667789
Q ss_pred eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
||+||++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 389 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 426 (450)
T PRK06116 389 CLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMG 426 (450)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999864
No 14
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.8e-68 Score=533.27 Aligned_cols=423 Identities=32% Similarity=0.556 Sum_probs=378.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc---ccccC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS---SVEVD 120 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 120 (477)
.|++|||||++|+.||..|++.|.+|+|||++ .+||+|++.+|+|+|.++..+...+...+ ...+|+... ...++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHH-HHhCCcccccCcccccC
Confidence 58999999999999999999999999999984 69999999999999999988877776553 566777642 45789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEE----ecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF----ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI 196 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~ 196 (477)
|..+..+.+...+.+...+...+++++++++.+++.+ ++++.+.|.+.+|+..++.||+||||||++|..+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 9999999999988888888888899999999999998 777888888777744579999999999999976665444
Q ss_pred CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (477)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 276 (477)
....+++.++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++...+.+.|+++||++++++
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~ 239 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRS 239 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCC
Confidence 45568888888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (477)
Q Consensus 277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~ 356 (477)
++.+++.+++++.+.+. +++++++|.|++++|++||+..+.++++|++++++|+|.||+++||++|||||+|||+
T Consensus 240 ~v~~v~~~~~~~~v~~~-----~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 240 RAESVERTGDGVVVTLT-----DGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT 314 (466)
T ss_pred EEEEEEEeCCEEEEEEC-----CCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence 99999876666666653 4568999999999999999997667889999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787 357 PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (477)
+.+++++.|..||++|++|+++.. .+..+..+|..+|++|+++++|+||++|+..++++.+..+++....++.+.+.++
T Consensus 315 ~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 394 (466)
T PRK07845 315 GVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRD 394 (466)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhcCCCc
Confidence 999999999999999999999865 4467888999999999999999999999999999999999998888888777889
Q ss_pred eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
||+|+++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus 395 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 432 (466)
T PRK07845 395 GFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNR 432 (466)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999854
No 15
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.5e-68 Score=533.05 Aligned_cols=428 Identities=46% Similarity=0.749 Sum_probs=378.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...||++||||||||++||..|++.|++|+|||+ ..+||+|.+.+|+|+|.++.....++.... ...+|+......++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~ 79 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQTAKK-ASPFGISVSGPALD 79 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcceEcCCcCchHHHHHHHHHHHHHHH-HHhcCccCCCCccC
Confidence 4579999999999999999999999999999999 489999999999999999988888776654 45667765556789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC-------EEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS-------EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g 193 (477)
|..+..+.+..+..+...+...+++.+++++.+.+.+++.+ .+.|.+.+|+..++.||+||||||++|..+|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~ 159 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG 159 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence 99999999999888877788888899999999999999988 88888777755689999999999999977777
Q ss_pred CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 273 (477)
.+.+...++++++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|++.||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 66556668888888887778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787 274 LKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (477)
Q Consensus 274 ~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~ 352 (477)
+++++++++. .++++.+... .+++.+++++|.+++|+|++|++..+.++..++..+ +|++.||++++|+.|+|||+
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~--~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~ts~~~IyAi 316 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAE--HNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQTKERHIYAI 316 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEE--eCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCcccCCCCEEEe
Confidence 9999999975 2334433221 123345799999999999999998765667777654 68999999999999999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhc
Q 011787 353 GDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI 431 (477)
Q Consensus 353 GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (477)
|||++.+.+++.|..||+.||+||++.. ..+++...|.++|++|+++++|++++|++..|+++.+...++....++.+.
T Consensus 317 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~ 396 (472)
T PRK05976 317 GDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTY 396 (472)
T ss_pred eecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhc
Confidence 9999989999999999999999999875 557788899999999999999999999999999999999999988888888
Q ss_pred CCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 432 DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 432 ~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
++++||+|+++|++|++|||+|++|++|.|+|+.+++||..+
T Consensus 397 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 438 (472)
T PRK05976 397 GESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELG 438 (472)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 888999999999999999999999999999999999999864
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=4.8e-68 Score=529.72 Aligned_cols=418 Identities=31% Similarity=0.494 Sum_probs=364.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc-ccccCh
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDL 121 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 121 (477)
+|||+||||||||++||..|++.|++|+|||+ +.+||+|++.+|+|+|.++.....++...+ ...+|+... ...++|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccCCcCccCH
Confidence 58999999999999999999999999999999 579999999999999999988887776653 456676543 235899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~ 201 (477)
..+..+.++..+.+...+...+++.+++++.++..+.+++.+.+ ++ ..+.||+||||||++|..++.++.. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~~i~g~-~~~ 153 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPENIPGA-ELG 153 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCCC-cee
Confidence 99999999999998888888899999999999998888776655 34 5799999999999998654222211 233
Q ss_pred ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
+++++...+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+|+++.+.+++.|+++||++++++.++++
T Consensus 154 ~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 154 TDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred EcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 56777777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCe-EEEEEeecCCCce-EEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 282 DLSGDG-VKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 282 ~~~~~~-~~v~~~~~~~~~~-~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
+.++++ +.+++. ++ +.+++|.|++++|++||++.+.++..+++++++|++.||+++||++|+|||+|||++.+
T Consensus 234 ~~~~~~~~~v~~~-----~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~ 308 (450)
T TIGR01421 234 EKTVEGKLVIHFE-----DGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV 308 (450)
T ss_pred EEeCCceEEEEEC-----CCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc
Confidence 865443 455553 23 57999999999999999997767889999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCC--CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CCC-EEEEEEecCccccchhcCCCc
Q 011787 360 MLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVE-YRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 435 (477)
.+++.|.+||+.+|+||++.. .+.++..+|+++|++|+++++|+||+||++. +++ +.+...++....++...++++
T Consensus 309 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 388 (450)
T TIGR01421 309 ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQK 388 (450)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCc
Confidence 999999999999999999643 3467889999999999999999999999876 654 888888888777776677889
Q ss_pred eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
||+|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus 389 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 426 (450)
T TIGR01421 389 CRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMG 426 (450)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999865
No 17
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=5.2e-68 Score=530.36 Aligned_cols=424 Identities=30% Similarity=0.496 Sum_probs=361.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~ 112 (477)
.+||++||||||+|+.||..+++. |.+|+|||++ +.+||+|+|.||+|+|.|+..+...+...+ ...+|+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence 469999999999999999999997 8999999974 579999999999999999999988776654 355677
Q ss_pred ccc--ccccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEecCCEEEEEecC---C-ceEEEEecEEEEccC
Q 011787 113 KFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIE---G-GNTVVKGKNIIIATG 185 (477)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~---g-~~~~i~~d~lvlAtG 185 (477)
... ...++|..+..+.+..+..+...+...++. .+++++.|.+.+++++.+.|.... + ..+.+.||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 532 346899999999999999998888888887 499999999999999998886422 1 135799999999999
Q ss_pred CCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcCCCCCHHHHHHHH
Q 011787 186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQ 262 (477)
Q Consensus 186 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~ 262 (477)
++|..+|..+. ..+++.++...+...+++++|||+|++|+|+|..+..+ |.+||++++.+++++.+|+++.+.+.
T Consensus 161 s~p~~p~i~G~--~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~ 238 (486)
T TIGR01423 161 SWPQMLGIPGI--EHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELT 238 (486)
T ss_pred CCCCCCCCCCh--hheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHH
Confidence 99854432111 23577777777777899999999999999999877655 99999999999999999999999999
Q ss_pred HHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~ 341 (477)
+.|+++||++++++.+++++.++++ ..+.+. ++.++++|.|++|+|++||+..+.++++|++++++|+|.||++
T Consensus 239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~ 313 (486)
T TIGR01423 239 KQLRANGINIMTNENPAKVTLNADGSKHVTFE-----SGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF 313 (486)
T ss_pred HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEc-----CCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC
Confidence 9999999999999999999865443 445543 3458999999999999999998777889999999999999999
Q ss_pred CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 011787 342 FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF 420 (477)
Q Consensus 342 l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 420 (477)
+||++|||||+|||++.+.+++.|.+||+++|+||++.. ..+++..+|+++|+.|+++++|+||+||+..+.++.+...
T Consensus 314 l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~ 393 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYES 393 (486)
T ss_pred CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEE
Confidence 999999999999999999999999999999999999754 3467778999999999999999999999988777777766
Q ss_pred ecCccccchhcC-CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 421 PFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 421 ~~~~~~~~~~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
++....+..... .+++|+|+++|++|++|||+|++|++|.|+|+.+++||..+
T Consensus 394 ~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~ 447 (486)
T TIGR01423 394 SFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLN 447 (486)
T ss_pred eeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 665444332211 13699999999999999999999999999999999999854
No 18
>PLN02546 glutathione reductase
Probab=100.00 E-value=5e-68 Score=535.48 Aligned_cols=417 Identities=30% Similarity=0.469 Sum_probs=365.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec---------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~ 112 (477)
.+|||+||||||||+.||..|+++|++|+|||+ ...+||+|++.||+|+|.++..+..++...+ ...+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~~~g~ 156 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SRGFGW 156 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hhhcCc
Confidence 469999999999999999999999999999996 2568999999999999999988888776554 466787
Q ss_pred ccc-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787 113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL 191 (477)
Q Consensus 113 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~ 191 (477)
... ...++|..+..+++..+..+...+...+++.+++++.+.+++++++.+.+ +| ..+.||+||||||++|..+
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPFIP 231 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCCCC
Confidence 653 45789999999999999999999999999999999999999999987665 45 5799999999999999543
Q ss_pred --CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787 192 --PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269 (477)
Q Consensus 192 --~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g 269 (477)
||. ..+++++++..+...+++++|||+|++|+|+|..|+..|.+|+++++.+.+++.+++++...+++.|+++|
T Consensus 232 ~IpG~----~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~G 307 (558)
T PLN02546 232 DIPGI----EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307 (558)
T ss_pred CCCCh----hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCC
Confidence 443 23677778877777899999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787 270 MKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (477)
Q Consensus 270 v~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~ 348 (477)
|++++++.+.++...+ +.+.+... +++...+|.|++++|++||++.+.++++|++++++|+|.||+++||++|+
T Consensus 308 V~i~~~~~v~~i~~~~~g~v~v~~~-----~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~ 382 (558)
T PLN02546 308 IEFHTEESPQAIIKSADGSLSLKTN-----KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPS 382 (558)
T ss_pred cEEEeCCEEEEEEEcCCCEEEEEEC-----CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCC
Confidence 9999999999997643 33444322 34455689999999999999876678899999988999999999999999
Q ss_pred eEEecccCCCCCchhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccc
Q 011787 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSR 427 (477)
Q Consensus 349 vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (477)
|||+|||++.+.+++.|..||+++|+||++... ..++..+|+++|++|+++++|+||+||++.++++++...++....+
T Consensus 383 IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~ 462 (558)
T PLN02546 383 IWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKA 462 (558)
T ss_pred EEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchh
Confidence 999999999999999999999999999998543 3567889999999999999999999999999999998888876655
Q ss_pred chhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 428 AKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 428 ~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
......+++|+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 463 ~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~ 508 (558)
T PLN02546 463 TLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAG 508 (558)
T ss_pred hhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 5444456899999999999999999999999999999999999865
No 19
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-67 Score=530.69 Aligned_cols=424 Identities=31% Similarity=0.548 Sum_probs=364.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
..+|||+||||||||++||..|++.|++|+|||+ ..+||+|.+.||+|++.++.....++........+|+......++
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~-~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIER-GTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc-cccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 4579999999999999999999999999999999 579999999999999999888877664443211346654455789
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787 121 LPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~ 198 (477)
|..+..+.++....+... +...++++ +++++.+.+.+++.+.+.|.+.+|+..+++||+||||||++|..+|..+.+.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~ 162 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAE 162 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence 999999988877766543 44455544 8999999999999999999888775568999999999999986443222223
Q ss_pred ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
..+++..+...+...+++++|||+|++|+|+|..|++.|.+|+++.+ +++++.+++++.+.+++.|++.||++++++.+
T Consensus 163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 34667777777777789999999999999999999999999999986 56788889999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (477)
Q Consensus 279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~ 358 (477)
++++.+++.+.+... +.++++|.|++|+|++||+..+.++++|++. ++|+|.||+++||++|+|||+|||++.
T Consensus 242 ~~i~~~~~~~~v~~~------~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 314 (468)
T PRK14694 242 SEVDYNGREFILETN------AGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQ 314 (468)
T ss_pred EEEEEcCCEEEEEEC------CCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecCCC
Confidence 999876655544432 2369999999999999999876667778876 468999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787 359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV 438 (477)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (477)
+.+.+.|..||++||.||++...++++..+|.++|++|+++++|+||+||+..|+++.+..+++....++...++++||+
T Consensus 315 ~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 394 (468)
T PRK14694 315 PQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFI 394 (468)
T ss_pred cccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEE
Confidence 99999999999999999998776678888999999999999999999999999999999999998888887777789999
Q ss_pred EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 395 klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 429 (468)
T PRK14694 395 KMVAERGSGRLLGVQVVAGEAGELIQTAVMALRAR 429 (468)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999864
No 20
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1e-67 Score=527.65 Aligned_cols=417 Identities=31% Similarity=0.515 Sum_probs=360.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
+||++|||+||+|..||.. ..|.+|+|||+ +.+||+|+|+||+|+|.++..+...+...+ ...+|+......++|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCCCccCHH
Confidence 5899999999999998654 46999999998 689999999999999999999888877664 4567776444568999
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-h--hhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787 123 AMMAQKDK-AVSNLTRGIEGL-F--KKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (477)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~ 198 (477)
++..+... ..+.+....... . ++.+++++.|++.+.+...+.+ .+| .+++||+||||||++|..+|......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g--~~~~~d~lIiATGs~p~~p~~~~~~~ 153 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDG--EEITGDQIVIAAGSRPYIPPAIADSG 153 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCC--cEEEeCEEEEEECCCCCCCCCCCCCC
Confidence 99999877 555544332222 2 3479999999999998776665 345 57999999999999997666554444
Q ss_pred ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
..+++.++...+.+.+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.++ .||++++++++
T Consensus 154 ~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V 232 (452)
T TIGR03452 154 VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNV 232 (452)
T ss_pred CEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEE
Confidence 56788888888888899999999999999999999999999999999999988899999888877554 68999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (477)
Q Consensus 279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~ 358 (477)
++++.+++++.+++. +++++++|.+++++|++||++.+.++++|++++++|+|.||+++||++|+|||+|||++.
T Consensus 233 ~~i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 307 (452)
T TIGR03452 233 TAVEQDGDGVTLTLD-----DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP 307 (452)
T ss_pred EEEEEcCCeEEEEEc-----CCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc
Confidence 999877666666553 345899999999999999999877788899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCce
Q 011787 359 PMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (477)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (477)
+++++.|.+||+++|+||++... ..++..+|+++|++|+++++|+||+||+..|+++.+...++....++...++++|
T Consensus 308 ~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g 387 (452)
T TIGR03452 308 YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTG 387 (452)
T ss_pred ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCe
Confidence 99999999999999999997642 5677889999999999999999999999999999999988888888777788899
Q ss_pred EEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 437 IVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 437 ~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus 388 ~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~ 424 (452)
T TIGR03452 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFG 424 (452)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999864
No 21
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.8e-67 Score=530.22 Aligned_cols=425 Identities=31% Similarity=0.495 Sum_probs=365.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
+.++|++|||+||||+++|..|++.|.+|+|||+++.+||+|++.||+|++.++..+...+.... ...+|+......++
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~ 92 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS-NPFDGVEAVAPSID 92 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhh-ccccCcccCCCccC
Confidence 34689999999999999999999999999999998799999999999999999988777665543 23346654445678
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787 121 LPAMMAQKDKAVSNLTR-GIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~ 198 (477)
|..+..+.......+.. .+...++.. +++++.|.+.+++.+.+.|...+|+..++.||+||||||++|..++..+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~ 172 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMD 172 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCc
Confidence 88888888887766643 355666654 8999999999999999999887775567999999999999986443222223
Q ss_pred ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
..+++..+.......+++++|||+|++|+|+|..|++.|.+|+++++. ++++.+|+++.+.+++.|++.||++++++++
T Consensus 173 ~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 173 TPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred cceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 345666666555567899999999999999999999999999999874 6778899999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (477)
Q Consensus 279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~ 358 (477)
++++.+++.+.+... + .++++|.|++|+|+.||+..+.++.+|++++++|+|.||+++||++|+|||+|||++.
T Consensus 252 ~~i~~~~~~~~v~~~-----~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~ 325 (479)
T PRK14727 252 SLVEHDDNGFVLTTG-----H-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDL 325 (479)
T ss_pred EEEEEeCCEEEEEEc-----C-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCc
Confidence 999876666555432 2 3689999999999999999776788899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787 359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV 438 (477)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (477)
|.+.+.|..||+.||.||++...++++...|.++|++|+++++|+||+||+..|+++.+..+++....++...+.+++++
T Consensus 326 ~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 405 (479)
T PRK14727 326 PQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFI 405 (479)
T ss_pred chhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEE
Confidence 99999999999999999998776778888999999999999999999999999999999999988887776666678999
Q ss_pred EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
||++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 406 Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 440 (479)
T PRK14727 406 KLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNR 440 (479)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999864
No 22
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=2e-67 Score=536.73 Aligned_cols=427 Identities=34% Similarity=0.536 Sum_probs=366.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-CCCCceeeccCccCchhhhhhhHHHHHHHhh--hhhCCcc------
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVK------ 113 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~--~~~~g~~------ 113 (477)
+||++|||+||+|+.||..+++.|++|+|||++ ..+||+|++.||+|+|.|+..+..++..... +..+|+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 4799999999999999999999888877643 2345664
Q ss_pred -----------c-cccccChHHHHHHHHHHHHHHHHHHHHHhhhCC-------eEEEEeEEEEecCCEEEEEecCCceEE
Q 011787 114 -----------F-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-------VTYVKGYGKFISPSEVSVDTIEGGNTV 174 (477)
Q Consensus 114 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~~v~~~~g~~~~ 174 (477)
. ....++|..+..+.+.....+...+...+++.+ ++++.+...+++++.+.+. .++ .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g--~~ 272 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG--KE 272 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC--EE
Confidence 1 234679999999999999998888888887764 8999999999999988775 344 67
Q ss_pred EEecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC
Q 011787 175 VKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254 (477)
Q Consensus 175 i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~ 254 (477)
+.||+||||||++|..++..+.+...+++++++..+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|
T Consensus 273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d 352 (659)
T PTZ00153 273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLD 352 (659)
T ss_pred EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCC
Confidence 99999999999999766655555667889999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCcEEEeCceEEEEEEcCCe--EEEEEeecCCC----------ceEEEEcCEEEEeecCCCCCCCC
Q 011787 255 GEIRKQFQRSL-EKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGG----------EKTILEADVVLVSAGRTPFTAGL 321 (477)
Q Consensus 255 ~~~~~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~~~~~----------~~~~i~~D~vi~a~G~~p~~~~l 321 (477)
+++.+.+.+.+ +++||++++++.|++++..++. +.+.+.+..++ +.+++++|.|++|+|++||++.+
T Consensus 353 ~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L 432 (659)
T PTZ00153 353 ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNL 432 (659)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccC
Confidence 99999998875 6789999999999999876543 44544321111 12479999999999999999987
Q ss_pred CccccceeecCCCCeecCCCCCCC------CCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC-------------CCC
Q 011787 322 GLDKIGVETDKMGRIPVNERFATN------IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK-------------HGH 382 (477)
Q Consensus 322 ~~~~~gl~~~~~g~i~vd~~l~t~------~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~-------------~~~ 382 (477)
.++..++..++ |+|.||++|||+ +|+|||+|||++.+++++.|.+||+++++||++. ...
T Consensus 433 ~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~ 511 (659)
T PTZ00153 433 GLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKP 511 (659)
T ss_pred CchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence 77888888764 899999999997 6999999999999999999999999999999986 445
Q ss_pred CCCCCCceEEEcCCCeeeecCCHHHHHHcCC--CEEEEEEecCccccchhcCC----------------------CceEE
Q 011787 383 VDYDKVPGVVYTHPEVASVGKTEEQVKELGV--EYRVGKFPFLANSRAKAIDD----------------------AEGIV 438 (477)
Q Consensus 383 ~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 438 (477)
++|..+|.++|++|+++++|+||+||++.+. ++.+...++....++...++ ++||+
T Consensus 512 ~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v 591 (659)
T PTZ00153 512 IIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV 591 (659)
T ss_pred cccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEE
Confidence 6788999999999999999999999999874 46666677777776654433 78999
Q ss_pred EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus 592 Kli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~ 626 (659)
T PTZ00153 592 KIVYLKDTKEILGMFIVGSYASILIHEGVLAINLK 626 (659)
T ss_pred EEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999865
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.1e-67 Score=528.55 Aligned_cols=420 Identities=39% Similarity=0.636 Sum_probs=368.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
|||+||||||||++||..|++.|++|+|||++ .+||+|++.+|+|++.++.....++.... ..+|+......++|..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVNVGCVPSKMLLRAAEVAHYARK--PPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeeeecEEccHHHHHHHHHHHHhhc--cCcccccCCCccCHHH
Confidence 69999999999999999999999999999995 59999999999999999988877766554 2366655556789999
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCCce
Q 011787 124 MMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKR 200 (477)
Q Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~~~ 200 (477)
+..+.++....+.. .+...+++.+++++.+++.+.+.+.+.+. ++ ...+.||+||||||++|..+ |+.+ ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~--~g-~~~~~~~~lIiATGs~p~~p~i~G~~--~~~ 152 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVD--LG-REVRGAKRFLIATGARPAIPPIPGLK--EAG 152 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEc--CC-eEEEEeCEEEEcCCCCCCCCCCCCcc--cCc
Confidence 99999888877754 36677888899999999999887766553 33 24689999999999998543 4433 345
Q ss_pred EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
+++++++......+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++...+++.+++.||+++++++|++
T Consensus 153 ~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 232 (463)
T TIGR02053 153 YLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKA 232 (463)
T ss_pred eECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEE
Confidence 78888887777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (477)
Q Consensus 281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~ 360 (477)
++.+++...+++.. +++++++++|.|++|+|++||++.+.++..+++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus 233 i~~~~~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~ 310 (463)
T TIGR02053 233 VSVRGGGKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ 310 (463)
T ss_pred EEEcCCEEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc
Confidence 98766655555532 1234689999999999999999866678889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 361 LAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
+++.|..||++||.||++. ..++++..+|.++|++|+++++|+|+++|+..|+++.+..+++....++...+++.|++|
T Consensus 311 ~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 390 (463)
T TIGR02053 311 LEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIK 390 (463)
T ss_pred cHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEE
Confidence 9999999999999999986 566778889999999999999999999999999999999999998888888788899999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 391 li~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 424 (463)
T TIGR02053 391 LVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAG 424 (463)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999854
No 24
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.4e-67 Score=526.24 Aligned_cols=421 Identities=39% Similarity=0.649 Sum_probs=373.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc--cccccChH
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLP 122 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~ 122 (477)
+++||||||||++||..|++.|++|+|||+ ..+||+|++.||+|+|.++..+..++.... ...+|+.. .....+|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~-~~~GG~c~n~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE-ADLGGTCLNEGCMPTKSLLESAEVHDKVKK-ANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC-CcccccCCCCccccchHHHHHHHHHHHHHH-HHhcCccccCCCCccCHH
Confidence 799999999999999999999999999999 579999999999999999998888776654 35567754 24578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~ 202 (477)
.+..+.++..+.+.......+++.+++++.|++.+++++.+.|...++ ..+++||+||||||++|..+|..+.+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~~~~~~~v~ 158 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFAPFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 999999999888888888888889999999999999999998886554 3579999999999999976665444456788
Q ss_pred cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (477)
Q Consensus 203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~ 282 (477)
++.+...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+.+.|++.||++++++++++++
T Consensus 159 ~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 159 NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (477)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~ 362 (477)
.++..+.+.. +++..++++|.|++|+|++||...+.++..|+..+++| +.||+++||+.|||||+|||++.+.++
T Consensus 239 ~~~~~v~~~~----~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la 313 (458)
T PRK06912 239 SYKKQALFEY----EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA 313 (458)
T ss_pred EcCCEEEEEE----CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCcccH
Confidence 6655444331 12335799999999999999998766778888887766 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEE
Q 011787 363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442 (477)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 442 (477)
+.|.+||++||.||++...++++..+|.++|++|+++++|+|++||+..++++.+..+++....++...+++.||+||++
T Consensus 314 ~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~ 393 (458)
T PRK06912 314 HVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIV 393 (458)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEE
Confidence 99999999999999987666778889999999999999999999999999999999988888888888888899999999
Q ss_pred ECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 443 EKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 443 ~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 394 d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 424 (458)
T PRK06912 394 EPKYQEIVGISIIGPRATELIGQGTVMIHTE 424 (458)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999754
No 25
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.1e-66 Score=525.24 Aligned_cols=419 Identities=26% Similarity=0.441 Sum_probs=356.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
.+||++||||||||++||..+++.|.+|+|||+ +.+||+|+++||+|+|.++..+...+...+ ...+|+... ..++|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk-~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~Gi~~~-~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEK-DYLGGTCVNVGCVPKKIMFNAASIHDILEN-SRHYGFDTQ-FSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEec-ccccccccccCCCCCchhhhhcccHHHHHH-HHhcCCCcc-CccCH
Confidence 568999999999999999999999999999999 489999999999999999988877665443 455676532 36899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEE--------------------------ecCCceEEE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVD--------------------------TIEGGNTVV 175 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~--------------------------~~~g~~~~i 175 (477)
..+..+.+..+..+.+.+...+++.+|+++.|++.+.+++++.|. ..+| .++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--~~i 201 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--QVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC--cEE
Confidence 999999999999888888888899999999999999998887641 2344 579
Q ss_pred EecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCH
Q 011787 176 KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG 255 (477)
Q Consensus 176 ~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~ 255 (477)
.||+||||||++|..++..+. ..+++++++..+.. +++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+
T Consensus 202 ~ad~lVIATGS~P~~P~IpG~--~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~ 278 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDVKGK--EFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE 278 (561)
T ss_pred ECCEEEEecCCCCCCCCCCCc--eeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH
Confidence 999999999999954332111 24677777777665 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g 334 (477)
++.+.+++.|+++||++++++.+.+++.+++ ++.+.+. ++++++++|.|++|+|++||++.+.++..++. +++|
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~----~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G 353 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS----DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKG 353 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC----CCCEEEECCEEEECcCCCCCccccCcccccee-cCCC
Confidence 9999999999999999999999999986543 4444432 13467999999999999999998766666665 4578
Q ss_pred CeecCCCCCCCCCCeEEecccCC----------------------------------CCCchhHHHHHHHHHHHHHcCCC
Q 011787 335 RIPVNERFATNIPGVYAIGDVIP----------------------------------GPMLAHKAEEDGVACVEFLAGKH 380 (477)
Q Consensus 335 ~i~vd~~l~t~~~~vya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~~~~ 380 (477)
+|.||+++||++|+|||+|||++ .+++++.|.+||++||+||++..
T Consensus 354 ~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~ 433 (561)
T PTZ00058 354 YIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPF 433 (561)
T ss_pred eEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998 57899999999999999999753
Q ss_pred -CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCccccchhc----CCCceEEEEEEECCCCeEEEEE
Q 011787 381 -GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANSRAKAI----DDAEGIVKILAEKETDKILGVH 453 (477)
Q Consensus 381 -~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~i~G~~ 453 (477)
...++..+|+++|++|+++++|+||+||+.. ++ ++.+...++....++... .++++++|+++|+++++|||+|
T Consensus 434 ~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ 513 (561)
T PTZ00058 434 SRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLH 513 (561)
T ss_pred CcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEE
Confidence 3457788999999999999999999999987 54 577777777766655432 2467999999999999999999
Q ss_pred EEcCChHHHHHHHHHHhcCC
Q 011787 454 IMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 454 ~~g~~~~~~~~~~~~~~~~~ 473 (477)
++|++|.|+||.+++||.++
T Consensus 514 ivG~~a~elI~~~a~ai~~~ 533 (561)
T PTZ00058 514 IVGLNADEILQGFAVALKMN 533 (561)
T ss_pred EECCCHHHHHHHHHHHHHcC
Confidence 99999999999999999864
No 26
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.1e-66 Score=520.45 Aligned_cols=426 Identities=28% Similarity=0.444 Sum_probs=363.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-----C---CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-----G---ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-----~---~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~ 114 (477)
+||++|||+||||+.||..+++.|.+|+|||+. . .+||+|++.||+|+|.++..+...+...+ ...+|+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh-hhhcCccc
Confidence 489999999999999999999999999999973 1 58999999999999999988887776543 35567765
Q ss_pred cc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787 115 SS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (477)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g 193 (477)
.. ..++|..+..+.++.+..+...+...++..+|+++.|.+.+++++++.|...+|+...+.||+||||||++|+.++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~- 159 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG- 159 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC-
Confidence 44 5789999999999999998888888899999999999999999999888765664568999999999999985433
Q ss_pred CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 273 (477)
++......++++++..+...+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|+++||+++
T Consensus 160 ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 160 IPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CCCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 2211124567788877777889999999999999999999999999999997 578899999999999999999999999
Q ss_pred eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecCCCCCCCCCCeEEe
Q 011787 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVYAI 352 (477)
Q Consensus 274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd~~l~t~~~~vya~ 352 (477)
+++.+.+++..++.+.+++.+. .+++++++|.|++|+|++||+..+.++.+|+++++ +|+|.||+++||++|+|||+
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~--~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~ 316 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDS--TNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecC--CcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEE
Confidence 9999999987666666655421 11357999999999999999998778899999875 48999999999999999999
Q ss_pred cccCC-CCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCccccc
Q 011787 353 GDVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANSRA 428 (477)
Q Consensus 353 GD~~~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 428 (477)
|||+. .+.+++.|.+||+.+|+||++.. ...++..+|+.+|++|+++++|+||+||++. +. .+.+...++....++
T Consensus 317 GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~ 396 (484)
T TIGR01438 317 GDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWT 396 (484)
T ss_pred EEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhH
Confidence 99996 67899999999999999999743 3367888999999999999999999999986 55 577777777665555
Q ss_pred hhcCC--CceEEEEEEE-CCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 429 KAIDD--AEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 429 ~~~~~--~~~~~k~~~~-~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
....+ +.+|+|++++ ++|++|||+|++|++|.|+||.+++||..+
T Consensus 397 ~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~ 444 (484)
T TIGR01438 397 IPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG 444 (484)
T ss_pred hhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 54433 6799999996 569999999999999999999999999864
No 27
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.2e-66 Score=535.12 Aligned_cols=424 Identities=31% Similarity=0.500 Sum_probs=363.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
.+|||+||||||||++||..|++.|++|+|||++ .+||+|++.||+|+|.++..+...+.....-...|+.......+|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4699999999999999999999999999999995 899999999999999998888776655432111466544456789
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787 122 PAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~ 199 (477)
..+..+.+..+..+... +...+.+. +++++.+.+.+++.+.+.|.+.+|+..++.||+||||||++|..++..+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 99998888777766542 45556665 89999999999999999988777644679999999999999864332222233
Q ss_pred eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.+++..+.......+++++|||+|++|+|+|..|++.|.+|+++++. .+++.+|+++.+.+++.|++.||++++++.++
T Consensus 256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~ 334 (561)
T PRK13748 256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS 334 (561)
T ss_pred ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 46666666656667899999999999999999999999999999985 46777899999999999999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
+++.+++.+.+... + .++++|.|++|+|++||+..+.++++|++++++|+|.||+++||++|||||+|||++.+
T Consensus 335 ~i~~~~~~~~v~~~-----~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~ 408 (561)
T PRK13748 335 QVAHVDGEFVLTTG-----H-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP 408 (561)
T ss_pred EEEecCCEEEEEec-----C-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc
Confidence 99876665555432 2 36999999999999999987667889999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (477)
.+.+.|..||++||.||++...++++...|.++|++|+++++|+||++|+..|+++.+..+++....++....++++|+|
T Consensus 409 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 488 (561)
T PRK13748 409 QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIK 488 (561)
T ss_pred cchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEE
Confidence 99999999999999999987666788889999999999999999999999999999999988888777766667789999
Q ss_pred EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|++|+++++|||+|++|+++.|+|+.+++||..+
T Consensus 489 li~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 522 (561)
T PRK13748 489 LVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNR 522 (561)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999854
No 28
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5e-66 Score=520.07 Aligned_cols=420 Identities=46% Similarity=0.759 Sum_probs=368.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
.+|||+||||||||++||..|++.|++|+|||+ +.+||+|.+.+|+|++.+++....++.... +..+|+......+++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~-~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKH-AEEFGIHADGPKIDF 79 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHH-HHhcCCCcCCCccCH
Confidence 459999999999999999999999999999999 789999999999999999988877766544 356676654457899
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCCCCCCc-cCC
Q 011787 122 PAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLPGIT-IDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~~~g~~-~~~ 198 (477)
..+..+.++....+...+ ...++..+++++.+.+.+++.+.+.+ ++ .++.||+||||||++ | .+|+.. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~~p-~ipg~~~~~~ 153 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSRVP-PIPGVWLILG 153 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCCCC-CCCCCcccCC
Confidence 999998888887776666 56667789999999999998887766 34 679999999999999 4 345543 234
Q ss_pred ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
..+++.++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+++.|+++ |++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 154 DRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEE
Confidence 5677888888777889999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787 279 VGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (477)
Q Consensus 279 ~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~ 357 (477)
.+++.+++ .+.++. .++++.++++|.+++++|++||++.+.++..|++++++|+|.||+++||++|+|||+|||++
T Consensus 233 ~~i~~~~~~~v~~~~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~ 309 (460)
T PRK06292 233 TSVEKSGDEKVEELE---KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNG 309 (460)
T ss_pred EEEEEcCCceEEEEE---cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCC
Confidence 99986654 344332 22355689999999999999999977678889999989999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCce
Q 011787 358 GPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (477)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (477)
.+++++.|..||+.||.||++. ....++..+|+.+|++|+++++|+||++|++.|+++.+..++++...++...++++|
T Consensus 310 ~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 389 (460)
T PRK06292 310 KPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDG 389 (460)
T ss_pred CccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCe
Confidence 9999999999999999999984 445677889999999999999999999999999999999999998889888788899
Q ss_pred EEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 437 IVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 437 ~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|+|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus 390 ~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~ 426 (460)
T PRK06292 390 FVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQG 426 (460)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999865
No 29
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-65 Score=513.13 Aligned_cols=406 Identities=31% Similarity=0.535 Sum_probs=348.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
+.|||+||||||||++||..|+++|++|+|||+.+ .+||+|.+.+|+|++.++..... ..+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~------------------~~~ 63 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------------------HTD 63 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc------------------CCC
Confidence 35999999999999999999999999999999965 58999999999999876543210 245
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~ 197 (477)
|.....+.+.....+.... ....+..+++++.+++.+++.+.+.|.+.++ ..++.||+||||||++|.. +|++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g-~~~~~~d~lviATGs~p~~p~i~G~~~- 141 (441)
T PRK08010 64 FVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEG-NLEIHGEKIFINTGAQTVVPPIPGITT- 141 (441)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCC-eEEEEeCEEEEcCCCcCCCCCCCCccC-
Confidence 6666666655554443322 2333445999999999999999998887666 2369999999999999854 445421
Q ss_pred CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (477)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 277 (477)
...++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||+++++++
T Consensus 142 ~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~ 221 (441)
T PRK08010 142 TPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH 221 (441)
T ss_pred CCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 23477778777777789999999999999999999999999999999999999989999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (477)
Q Consensus 278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~ 357 (477)
+++++.+++.+.+... + .++++|.+++|+|++||++.+.++.+|++++++|+|.||+++||++|||||+|||++
T Consensus 222 v~~i~~~~~~v~v~~~-----~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 295 (441)
T PRK08010 222 VERISHHENQVQVHSE-----H-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTG 295 (441)
T ss_pred EEEEEEcCCEEEEEEc-----C-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCC
Confidence 9999876666555432 2 358999999999999999876677889999888999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHcCC-CC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787 358 GPMLAHKAEEDGVACVEFLAGK-HG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~-~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (477)
.+++++.|..||+++++||+++ .. ...+..+|.++|++|+++++|+||+||++.|+++.+..+++....++..+++++
T Consensus 296 ~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 375 (441)
T PRK08010 296 GLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTR 375 (441)
T ss_pred CccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCc
Confidence 9999999999999999999985 22 246778999999999999999999999999999999999999999998888889
Q ss_pred eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
|++|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus 376 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 413 (441)
T PRK08010 376 GVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAG 413 (441)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999865
No 30
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.2e-65 Score=513.83 Aligned_cols=425 Identities=52% Similarity=0.847 Sum_probs=380.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
+|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++... ....+++......++|.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIK-HAKDYGIEVENVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHH-HHHhcCCCCCCCcCCHH
Confidence 38999999999999999999999999999999 89999999999999999988888777666 36667776666678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC-CccCCceE
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG-ITIDEKRI 201 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g-~~~~~~~~ 201 (477)
.+..+.+...+.+...+...+++.+++++.+++.+++++.+.+...++ ..++.||+||||||++|..+|. ++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g-~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENG-EETLTAKNIIIATGSRPRSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCC-cEEEEeCEEEEcCCCCCCCCCCCCCCCCceE
Confidence 999988888888888888889999999999999999999988886654 2579999999999999976655 34445578
Q ss_pred ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
++.++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++++.++
T Consensus 158 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 158 ITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred EcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 88888888878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~ 361 (477)
+.+++++.+... +++..++++|.+++|+|.+|+...+.++..++.++++|++.||+++||+.|+|||+|||++.+.+
T Consensus 238 ~~~~~~v~v~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENK---GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPML 314 (461)
T ss_pred EEeCCEEEEEEe---CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCccc
Confidence 877777665543 12235799999999999999998655788899999999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEE
Q 011787 362 AHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 440 (477)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 440 (477)
++.|..||+.+|+||.+... .+++...|.+.|++|+++++|+++++++..|+++.+...++....++...+++++++|+
T Consensus 315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 394 (461)
T TIGR01350 315 AHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKI 394 (461)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEE
Confidence 99999999999999998664 67788899999999999999999999999999999999998888888877788999999
Q ss_pred EEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 441 LAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 441 ~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
++|+++++|||+|++|+++.|+|+.+++||..+
T Consensus 395 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 427 (461)
T TIGR01350 395 IADKKTGEILGAHIIGPHATELISEAVLAMELE 427 (461)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999854
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1e-64 Score=510.69 Aligned_cols=423 Identities=27% Similarity=0.406 Sum_probs=355.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~ 113 (477)
.+|||+||||||||++||..|++.|++|+|||+.. .+||+|++.+|+|++.++..+...+...+....+|+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 36899999999999999999999999999999631 4899999999999999888888777665544567776
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787 114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (477)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g 193 (477)
... .++|..+..+....+..+...+...++..+|+++.+.+.+.+.+.+.+... +....+.||+||||||++|..++.
T Consensus 84 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~p~~ 161 (499)
T PTZ00052 84 TSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPED 161 (499)
T ss_pred CCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCCCCC
Confidence 544 789999999999988888777777777789999999999988888877632 223679999999999999864432
Q ss_pred CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 273 (477)
++......++++++..+...+++++|||+|++|+|+|..|++.|.+||++.+. .+++.+|+++.+.+++.|+++||+++
T Consensus 162 i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 162 VPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEE
Confidence 22222345677888777778899999999999999999999999999999874 66788999999999999999999999
Q ss_pred eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEec
Q 011787 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (477)
Q Consensus 274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~G 353 (477)
+++.+++++..++.+.+.+. +++++++|.|++++|++||++.+.++.++++++++|++.+++. +|+.|+|||+|
T Consensus 241 ~~~~v~~v~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiG 314 (499)
T PTZ00052 241 EGVVPINIEKMDDKIKVLFS-----DGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVG 314 (499)
T ss_pred cCCeEEEEEEcCCeEEEEEC-----CCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEE
Confidence 99999999876555555553 3457899999999999999998767888999999898777777 99999999999
Q ss_pred ccCC-CCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccch
Q 011787 354 DVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK 429 (477)
Q Consensus 354 D~~~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 429 (477)
||+. .|.+++.|.+||+++|+||++.. ...++..+|+++|++|+++++|+||+||++. + .++.+...++.......
T Consensus 315 Dv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~ 394 (499)
T PTZ00052 315 DVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA 394 (499)
T ss_pred EecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc
Confidence 9984 67899999999999999999754 3467888999999999999999999999987 4 46888777765433222
Q ss_pred hc---------------CCCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 430 AI---------------DDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 430 ~~---------------~~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
.. .+++||+|+++|+ +|++|||+|++|++|+|||+.+++||.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~ 454 (499)
T PTZ00052 395 VHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLG 454 (499)
T ss_pred cccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 11 1368999999997 48999999999999999999999999854
No 32
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-65 Score=456.76 Aligned_cols=424 Identities=32% Similarity=0.511 Sum_probs=375.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc-cccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVE 118 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~ 118 (477)
....+|.+|||||..|+++|+++++.|.++.|+|....+||+|.+.||+|++.++..+.....+. ....+|++. ....
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~-da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEME-DAKDYGFPINEEGS 95 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhh-hhhhcCCccccccC
Confidence 44579999999999999999999999999999999779999999999999999988777665544 357789887 5678
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC--CCCCCCcc
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV--KSLPGITI 196 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~--~~~~g~~~ 196 (477)
++|..+.+.++.++.++...|+..+.+..|+++.|+++++++.++.|...+|....+++++++||||++| |.+||.
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~-- 173 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGA-- 173 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCch--
Confidence 9999999999999999999999999999999999999999999999999998666799999999999999 456664
Q ss_pred CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (477)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 276 (477)
..-++++.++++++.|++++|+|+|++++|+|..++.+|.+++++-|.+.+++.||+.++..+.+.++.+||+++.++
T Consensus 174 --E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s 251 (478)
T KOG0405|consen 174 --ELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNS 251 (478)
T ss_pred --hhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccc
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (477)
Q Consensus 277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~ 356 (477)
.++++....++..+.... .+....+|.++||+|+.||+..|.+++.|++++.+|.|.||++.+||+|+||++||++
T Consensus 252 ~~~~v~K~~~g~~~~i~~----~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~ 327 (478)
T KOG0405|consen 252 SVTKVIKTDDGLELVITS----HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT 327 (478)
T ss_pred cceeeeecCCCceEEEEe----ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence 999998776664433321 3455669999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcC--CCCCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccchhcC
Q 011787 357 PGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAKAID 432 (477)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~--~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 432 (477)
+...+++.|...|+..++.+++ ++.+.+|.++|+++|.+|+++++||||+||.+. | -++.+..-.|.....+....
T Consensus 328 gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~ 407 (478)
T KOG0405|consen 328 GKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGR 407 (478)
T ss_pred CcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcC
Confidence 9999999999999999999996 456789999999999999999999999999765 3 44554432233223333334
Q ss_pred CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcC
Q 011787 433 DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHD 472 (477)
Q Consensus 433 ~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~ 472 (477)
..+.++||+++.++.+++|+|++|+.+.|+++.++.|+-+
T Consensus 408 k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKm 447 (478)
T KOG0405|consen 408 KEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKM 447 (478)
T ss_pred CcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheec
Confidence 5678999999999999999999999999999999999864
No 33
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.3e-64 Score=501.51 Aligned_cols=405 Identities=31% Similarity=0.534 Sum_probs=352.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
+|||+||||||||++||..|++.|++|+||||++. +||+|.+.+|+|++.++..... ..+|
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~------------------~~~~ 64 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK------------------NLSF 64 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc------------------CCCH
Confidence 59999999999999999999999999999999764 7999999999999987654431 2467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccCCc
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK 199 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~~~ 199 (477)
..+..+.+.....+.......+.+.+|+++.+++.+++.+.+.+...+ ....+.||+||||||++|.. +||.. +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~-~~~~~~~d~vViATGs~~~~p~i~G~~-~~~ 142 (438)
T PRK07251 65 EQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPGLA-DSK 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCC-CcEEEEcCEEEEeCCCCCCCCCCCCcC-CCC
Confidence 777777776666666666677888899999999999888877776422 23579999999999999854 45542 234
Q ss_pred eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.++++.++..+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++..++++.+.+.+.++++||+++++++++
T Consensus 143 ~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~ 222 (438)
T PRK07251 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTT 222 (438)
T ss_pred cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 57888888887778999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~ 359 (477)
+++.+++.+.+.. +++++++|.+++|+|++|+.+.+.++..++..+++|++.||+++||+.|||||+|||++.+
T Consensus 223 ~i~~~~~~v~v~~------~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~ 296 (438)
T PRK07251 223 EVKNDGDQVLVVT------EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGP 296 (438)
T ss_pred EEEecCCEEEEEE------CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCc
Confidence 9987655554432 3468999999999999999987767777888888899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceE
Q 011787 360 MLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437 (477)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (477)
.+.+.|..+|+.++.++++... ..++..+|+.+|++|+++++|+|+++|+..|+++.+..+++....++...++.+|+
T Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (438)
T PRK07251 297 QFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGA 376 (438)
T ss_pred ccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEE
Confidence 9999999999999999987542 23567889999999999999999999999999999999999888888777888899
Q ss_pred EEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787 438 VKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473 (477)
Q Consensus 438 ~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~ 473 (477)
+|+++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus 377 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 412 (438)
T PRK07251 377 FKVVVNTETKEILGATLFGEGSQEIINLITMAMDNK 412 (438)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999854
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-55 Score=391.28 Aligned_cols=427 Identities=32% Similarity=0.528 Sum_probs=357.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g 111 (477)
.+.+||++|||||.+||+||.+++..|.+|.++|-- .-+||+|.|.||+|++.+...+ ..-...+....+|
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAa-llG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAA-LLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHH-HHHHHHHHHHhhC
Confidence 356799999999999999999999999999999831 1357999999999998775444 4444455567888
Q ss_pred ccccc--cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 112 VKFSS--VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
+...+ ...+|..+.......+..+...+.-.+++..|++++....|++++++.....+|+.+.+.++.+|||||.+|+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 88754 7899999998888888877777777778889999999999999999999988888889999999999999995
Q ss_pred --CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 011787 190 --SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (477)
Q Consensus 190 --~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~ 267 (477)
.+|| ..+.-++++|++.+...|.+.+|||+|+.++|+|..|+-+|.+||++.|+= ++..||.++.+.+.+.|++
T Consensus 175 Yp~IpG---~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~LrGFDqdmae~v~~~m~~ 250 (503)
T KOG4716|consen 175 YPDIPG---AKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLRGFDQDMAELVAEHMEE 250 (503)
T ss_pred CCCCCC---ceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecccccHHHHHHHHHHHHH
Confidence 4454 456789999999999999999999999999999999999999999998764 5789999999999999999
Q ss_pred cCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecCCCCCCC
Q 011787 268 QKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATN 345 (477)
Q Consensus 268 ~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd~~l~t~ 345 (477)
+||.|...+.+..++..+ +...+......++++.+-++|.|+||+|+.+.+..++++.+|+..|+ .|.|++|+.-+|+
T Consensus 251 ~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~ 330 (503)
T KOG4716|consen 251 RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATN 330 (503)
T ss_pred hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcC
Confidence 999999888888887654 44555555545556667889999999999999999999999999965 5899999999999
Q ss_pred CCCeEEecccC-CCCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEe
Q 011787 346 IPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFP 421 (477)
Q Consensus 346 ~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~ 421 (477)
+|+|||+||+. +.|.+++.|.+.|+..|+.+++. ....+|..+|+.+|+..|++++|++|++|.+. | -++++.+-.
T Consensus 331 vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~ 410 (503)
T KOG4716|consen 331 VPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSY 410 (503)
T ss_pred CCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeecc
Confidence 99999999998 56889999999999999999864 45579999999999999999999999998654 3 334443322
Q ss_pred cCccccchh-cCCCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787 422 FLANSRAKA-IDDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATH 471 (477)
Q Consensus 422 ~~~~~~~~~-~~~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~ 471 (477)
|.-...... .+...+|+|.+..+ ++.+|+|.|++|+.|+|.++.+|.|+-
T Consensus 411 f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk 462 (503)
T KOG4716|consen 411 FKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALK 462 (503)
T ss_pred ccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHH
Confidence 221111111 13356899999985 567999999999999999999999874
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.1e-53 Score=425.82 Aligned_cols=377 Identities=21% Similarity=0.321 Sum_probs=290.7
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
.+|||||||+||++||.+|++. +.+|+|||+++.++ +..| .|... . ..+. .
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~lp~~~---------------~-~~~~------~ 55 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPYYI---------------G-EVVE------D 55 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCCcchhh---------------c-CccC------C
Confidence 4899999999999999999987 68999999976542 1111 11100 0 0000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEE-eEEEEecCCEEEEEecCC---ceEEEEecEEEEccCCCCCCCCCCcc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSEVSVDTIEG---GNTVVKGKNIIIATGSDVKSLPGITI 196 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~v~~~~g---~~~~i~~d~lvlAtG~~~~~~~g~~~ 196 (477)
...... ...+.+.++.+++++. ..+..+|.+...|.+.++ +..++.||+||||||++|+.++ .+
T Consensus 56 ~~~~~~----------~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~-~~- 123 (438)
T PRK13512 56 RKYALA----------YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG-FE- 123 (438)
T ss_pred HHHccc----------CCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC-CC-
Confidence 000000 0012334567899875 578888877666655432 2345799999999999996544 32
Q ss_pred CCceEecc---hhhhcc-----cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787 197 DEKRIVSS---TGALAL-----NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (477)
Q Consensus 197 ~~~~~~~~---~~~~~~-----~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (477)
...+++. .+...+ ...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus 124 -~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 124 -SDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred -CCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 2334433 222221 2347999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (477)
Q Consensus 269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~ 348 (477)
||++++++++++++. . .+++. +++.+++|.|++|+|++||+++ +++.|+.++++|+|.||+++||++||
T Consensus 203 gI~i~~~~~v~~i~~--~--~v~~~-----~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 203 EIPYRLNEEIDAING--N--EVTFK-----SGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred CCEEEECCeEEEEeC--C--EEEEC-----CCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCCC
Confidence 999999999999953 2 34443 3457999999999999999986 67788988888999999999999999
Q ss_pred eEEecccCC----------CCCchhHHHHHHHHHHHHHcCCCC-CC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEE
Q 011787 349 VYAIGDVIP----------GPMLAHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416 (477)
Q Consensus 349 vya~GD~~~----------~~~~~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~ 416 (477)
|||+|||++ .+.+++.|.+||+++|+||++... .+ .+..+|.+.|++|+++++|+||+||+.. ++.
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~--~~~ 349 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF--DYK 349 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC--CcE
Confidence 999999985 245788899999999999998643 23 4567889999999999999999999875 466
Q ss_pred EEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK 473 (477)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~ 473 (477)
+..+++....+.. .+++.||+|+++|+++++|||+|++|++ +.|+|+.+++||..+
T Consensus 350 ~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~ 406 (438)
T PRK13512 350 MVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQ 406 (438)
T ss_pred EEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcC
Confidence 6666665444433 4677899999999999999999999997 899999999999854
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=2.5e-52 Score=419.23 Aligned_cols=381 Identities=28% Similarity=0.333 Sum_probs=289.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
+|||||||+||+++|..|++.+ .+|+|||+++.++- ..| .|.. .. +.. ...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~----~~~~~~~~----~~-------------~~~-----~~~ 55 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF----GACGLPYF----VG-------------GFF-----DDP 55 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee----ecCCCceE----ec-------------ccc-----CCH
Confidence 7999999999999999999874 58999999765431 111 1100 00 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecC---CceEEEEecEEEEccCCCCCC--CCCCc
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIE---GGNTVVKGKNIIIATGSDVKS--LPGIT 195 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~---g~~~~i~~d~lvlAtG~~~~~--~~g~~ 195 (477)
..+.....+.+.+.+++++.+ .+..++.+...|...+ +....+.||+||||||++|.. +|+.+
T Consensus 56 -----------~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~ 124 (444)
T PRK09564 56 -----------NTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNIN 124 (444)
T ss_pred -----------HHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcC
Confidence 000111123455678998754 6777776554444432 322234499999999999853 44443
Q ss_pred cCCceEecc---hhhhccc-----CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHH
Q 011787 196 IDEKRIVSS---TGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLE 266 (477)
Q Consensus 196 ~~~~~~~~~---~~~~~~~-----~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~ 266 (477)
...+++. .+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+.+.++
T Consensus 125 --~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~ 202 (444)
T PRK09564 125 --LENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR 202 (444)
T ss_pred --CCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH
Confidence 2334433 2233222 2478999999999999999999999999999999988876 589999999999999
Q ss_pred hcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCC
Q 011787 267 KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI 346 (477)
Q Consensus 267 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~ 346 (477)
+.||++++++++.+++.+++...+.. ++.++++|.+++|+|++||.+. +++.|++++++|+|.||+++||++
T Consensus 203 ~~gI~v~~~~~v~~i~~~~~~~~v~~------~~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 274 (444)
T PRK09564 203 ENGVELHLNEFVKSLIGEDKVEGVVT------DKGEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSI 274 (444)
T ss_pred HCCCEEEcCCEEEEEecCCcEEEEEe------CCCEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccCC
Confidence 99999999999999965433323332 2347999999999999999876 678889888889999999999999
Q ss_pred CCeEEecccCCC----------CCchhHHHHHHHHHHHHHcCCCCCCCCCCCce-EEEcCCCeeeecCCHHHHHHcCCCE
Q 011787 347 PGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPG-VVYTHPEVASVGKTEEQVKELGVEY 415 (477)
Q Consensus 347 ~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~-~~~~~~~~~~~G~~~~~~~~~~~~~ 415 (477)
|||||+|||+.. +++++.|.+||+++|+||++....++....+. ..|++|+++++|+|++|+++.|+++
T Consensus 275 ~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~ 354 (444)
T PRK09564 275 ENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDY 354 (444)
T ss_pred CCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCe
Confidence 999999999953 45889999999999999998765555444443 5599999999999999999999999
Q ss_pred EEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK 473 (477)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~ 473 (477)
.+..++.. ..+....+.+.+|+|+++|++|++|||+|++|++ +.|+|+.+++||.++
T Consensus 355 ~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~ 412 (444)
T PRK09564 355 KTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAK 412 (444)
T ss_pred EEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCC
Confidence 99887643 3334445667899999999999999999999996 889999999999855
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=3.6e-46 Score=372.26 Aligned_cols=320 Identities=23% Similarity=0.309 Sum_probs=257.4
Q ss_pred HhhhCCeEEEE-eEEEEecCCEEEEEecCC-ceEEEE--ecEEEEccCCCCCCC--CCCccCCceEecchhhhc---c--
Q 011787 142 LFKKNKVTYVK-GYGKFISPSEVSVDTIEG-GNTVVK--GKNIIIATGSDVKSL--PGITIDEKRIVSSTGALA---L-- 210 (477)
Q Consensus 142 ~~~~~~v~~~~-~~~~~~~~~~~~v~~~~g-~~~~i~--~d~lvlAtG~~~~~~--~g~~~~~~~~~~~~~~~~---~-- 210 (477)
++.+.+++++. ..+..++.....+.+.++ ....+. ||+||||||++|..+ ||.+ ...+++..+... +
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~--~~~v~~~~~~~~~~~~~~ 130 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGIN--LDIVFTLRNLEDTDAIKQ 130 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcC--CCCEEEECCHHHHHHHHH
Confidence 44667899864 467777755544443321 124567 999999999998543 4432 233444333221 1
Q ss_pred ---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC
Q 011787 211 ---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD 286 (477)
Q Consensus 211 ---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 286 (477)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.+ .+.+++++.+.+.+.|++.||++++++.+.+++.++.
T Consensus 131 ~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~ 210 (427)
T TIGR03385 131 YIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER 210 (427)
T ss_pred HHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC
Confidence 134789999999999999999999999999999999887 4678899999999999999999999999999976543
Q ss_pred eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC--------
Q 011787 287 GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-------- 358 (477)
Q Consensus 287 ~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~-------- 358 (477)
+ +.+. +++++++|.+++|+|.+|+.+. ++.+|+.++++|+|.||++++|+.|+|||+|||+..
T Consensus 211 -~-v~~~-----~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~ 281 (427)
T TIGR03385 211 -V-KVFT-----SGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKP 281 (427)
T ss_pred -E-EEEc-----CCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCc
Confidence 3 3332 4568999999999999999886 677889988889999999999999999999999952
Q ss_pred --CCchhHHHHHHHHHHHHHcCCCCCCC-CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787 359 --PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (477)
Q Consensus 359 --~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (477)
+++++.|.+||+++|+||++....++ +...|.+.|++|+++++|+|+++|++.|+++.+..+++....++. .+.+.
T Consensus 282 ~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~~~~~ 360 (427)
T TIGR03385 282 AWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-PGNSP 360 (427)
T ss_pred eeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-CCCce
Confidence 35789999999999999998754332 235688999999999999999999999999999887765544433 36678
Q ss_pred eEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787 436 GIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK 473 (477)
Q Consensus 436 ~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~ 473 (477)
|++|+++|++|++|||+|++|++ +.|+|+.+++||.++
T Consensus 361 g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~ 399 (427)
T TIGR03385 361 LHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAG 399 (427)
T ss_pred EEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCC
Confidence 99999999999999999999999 999999999999865
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.8e-44 Score=374.95 Aligned_cols=367 Identities=20% Similarity=0.284 Sum_probs=275.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
+.+|||||+|+||+.+|.+|++. +++|+||++++.++ +..+..+. .+.. .
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~~L~~--------------~~~~--~------ 56 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRVHLSS--------------YFSH--H------ 56 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCCcchH--------------hHcC--C------
Confidence 35899999999999999999864 47999999976542 00000000 0000 0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~ 195 (477)
.. +.+......++++.+++++.++ +..+|.....|.+.+| ..+.||+||||||++|.. +||.+
T Consensus 57 -~~-----------~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~ 122 (847)
T PRK14989 57 -TA-----------EELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSE 122 (847)
T ss_pred -CH-----------HHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCC
Confidence 00 0111112345667899999885 7778888888888777 679999999999999854 45544
Q ss_pred cCCceEe-cchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787 196 IDEKRIV-SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 196 ~~~~~~~-~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv 270 (477)
......+ +..++..+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+|++..+.+.+.|+++||
T Consensus 123 ~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV 202 (847)
T PRK14989 123 TQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGV 202 (847)
T ss_pred CCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCC
Confidence 3222222 45555443 23578999999999999999999999999999999999887 6899999999999999999
Q ss_pred EEEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787 271 KFMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~ 348 (477)
++++++.++++..++ ....+.+. +++++++|.|++|+|.+||.++ ++.+|+.++++|+|.||++|||++|+
T Consensus 203 ~v~~~~~v~~I~~~~~~~~~~v~~~-----dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p~ 275 (847)
T PRK14989 203 RVHTSKNTLEIVQEGVEARKTMRFA-----DGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDPD 275 (847)
T ss_pred EEEcCCeEEEEEecCCCceEEEEEC-----CCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCCC
Confidence 999999999997543 23344543 5678999999999999999985 67889999999999999999999999
Q ss_pred eEEecccCCCC----CchhHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEcCCCeeeecCCHHHHHHcCCCEEEEEEecC
Q 011787 349 VYAIGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV-VYTHPEVASVGKTEEQVKELGVEYRVGKFPFL 423 (477)
Q Consensus 349 vya~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 423 (477)
|||+|||+..+ .+++.|..||++||+||++....++....+.. ...+.+++++|... +.+.
T Consensus 276 IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~------~~~~-------- 341 (847)
T PRK14989 276 IYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAH------GRTP-------- 341 (847)
T ss_pred EEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEeccccc------CCCC--------
Confidence 99999999643 37889999999999999998766666666643 34555777777211 1100
Q ss_pred ccccch-hcC-CCceEEEEEEECCCCeEEEEEEEcCCh--HHHHHHHHHHhc
Q 011787 424 ANSRAK-AID-DAEGIVKILAEKETDKILGVHIMAPNA--GELIHEAAMATH 471 (477)
Q Consensus 424 ~~~~~~-~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~--~~~~~~~~~~~~ 471 (477)
..... +.+ .+.+|.|+++++++++|+|++++|+.+ .++++.+..++.
T Consensus 342 -~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~ 392 (847)
T PRK14989 342 -GARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE 392 (847)
T ss_pred -CceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCC
Confidence 00111 123 347899999999999999999999965 888888865543
No 39
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.5e-42 Score=338.07 Aligned_cols=348 Identities=19% Similarity=0.241 Sum_probs=250.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
..+|||||||+||++||..|++.+. +|+|++++.... +..+.-++.++ .. .. ......
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~-------------~~-~~-~~~~~~- 62 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSML-------------LE-DS-PQLQQV- 62 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHH-------------CC-CC-cccccc-
Confidence 4689999999999999999999875 799999864331 00000000000 00 00 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~ 199 (477)
...+++.+.+++++.+ .+..+|.....+.+.+| ..+.||+||||||++|+.+|..+....
T Consensus 63 -----------------~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~ 123 (396)
T PRK09754 63 -----------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGE 123 (396)
T ss_pred -----------------CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCC
Confidence 0123455679999988 57788888778877777 679999999999999976665443344
Q ss_pred eEec---chhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEE
Q 011787 200 RIVS---STGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272 (477)
Q Consensus 200 ~~~~---~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~ 272 (477)
.+++ .+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+++...+.+.+.++++||++
T Consensus 124 ~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i 203 (396)
T PRK09754 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRI 203 (396)
T ss_pred CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEE
Confidence 4554 34544433 2478999999999999999999999999999999998876 468888889999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (477)
Q Consensus 273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~ 352 (477)
++++.+++++. ++.+.+.+. +++++++|.|++++|.+||..+ ++..|+..+ ++|.||+++||+.|+|||+
T Consensus 204 ~~~~~V~~i~~-~~~~~v~l~-----~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~IyA~ 273 (396)
T PRK09754 204 LLNNAIEHVVD-GEKVELTLQ-----SGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAG 273 (396)
T ss_pred EeCCeeEEEEc-CCEEEEEEC-----CCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCEEEc
Confidence 99999999975 445555554 4568999999999999999874 566777654 5799999999999999999
Q ss_pred cccCCC---------CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecC
Q 011787 353 GDVIPG---------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFL 423 (477)
Q Consensus 353 GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 423 (477)
|||+.. +.+|+.|..||++||+||++....++.....+...++..+.++|....+ .+ ...
T Consensus 274 GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~-~~~---- 342 (396)
T PRK09754 274 GDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD------DW-LCR---- 342 (396)
T ss_pred cceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeCCCCC------EE-EEe----
Confidence 999942 1367899999999999999876543333333444556788888865431 11 000
Q ss_pred ccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC
Q 011787 424 ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458 (477)
Q Consensus 424 ~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~ 458 (477)
. ..+...|+.+++ ++++|+|+..+|..
T Consensus 343 ~------~~~~~~~~~~~~--~~~~l~g~~~~~~~ 369 (396)
T PRK09754 343 G------NPETQKAIWFNL--QNGVLIGAVTLNQG 369 (396)
T ss_pred c------CCCCceEEEEEe--eCCEEEEEEEECCH
Confidence 0 012223444444 46999999999974
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=8.8e-40 Score=320.73 Aligned_cols=349 Identities=21% Similarity=0.324 Sum_probs=249.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
+++||||||+||+++|..|++. +.+|+||++++.. .+.. | .+ ... +. .+.. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~--~---~l--~~~-------~~-~~~~-------~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK--P---DL--SHV-------FS-QGQR-------A 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc--C---cC--cHH-------Hh-CCCC-------H
Confidence 5899999999999999999886 4689999986431 0000 0 00 000 00 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~ 198 (477)
.++ ......+++++++++++.+ .+..++.....+.+ ++ ..+.||+||||||++|..+ |+.. .
T Consensus 57 ~~~----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~p~i~G~~--~ 121 (377)
T PRK04965 57 DDL----------TRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFVPPIPGRE--L 121 (377)
T ss_pred HHh----------hcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCCCCCCCCc--e
Confidence 000 0011234566779998865 67788877666665 34 5799999999999998543 3432 1
Q ss_pred ceEecchh---hhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcCcE
Q 011787 199 KRIVSSTG---ALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMK 271 (477)
Q Consensus 199 ~~~~~~~~---~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gv~ 271 (477)
+++..+ +... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. ++++....+++.+++.||+
T Consensus 122 --v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~ 199 (377)
T PRK04965 122 --MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVH 199 (377)
T ss_pred --EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCE
Confidence 444333 2221 134789999999999999999999999999999999988764 6888999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya 351 (477)
+++++++.+++.+++...+.+. +++++++|.+|+|+|.+|+..+ ++..|+..+. ++.||+++||+.|||||
T Consensus 200 i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~--gi~vd~~l~ts~~~VyA 270 (377)
T PRK04965 200 LLLKSQLQGLEKTDSGIRATLD-----SGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR--GIVVDSYLQTSAPDIYA 270 (377)
T ss_pred EEECCeEEEEEccCCEEEEEEc-----CCcEEECCEEEECcCCCcchHH--HHHCCCCcCC--CEEECCCcccCCCCEEE
Confidence 9999999999877666666654 5678999999999999999875 5677887753 49999999999999999
Q ss_pred ecccCCCC----CchhHHHHHHHHHHHHHcCCCCCCCCCCCce-EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccc
Q 011787 352 IGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG-VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANS 426 (477)
Q Consensus 352 ~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 426 (477)
+|||+..+ ..+..|..||+++|+||++.+..+..+..+. ..+.+.++.++|....+ ..
T Consensus 271 ~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~------------- 333 (377)
T PRK04965 271 LGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ----DL------------- 333 (377)
T ss_pred eeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC----Cc-------------
Confidence 99999532 2466799999999999999876555444433 33556678888865431 00
Q ss_pred cchhcCCCce-EEEEEEECCCCeEEEEEEEcCChHHHH
Q 011787 427 RAKAIDDAEG-IVKILAEKETDKILGVHIMAPNAGELI 463 (477)
Q Consensus 427 ~~~~~~~~~~-~~k~~~~~~~~~i~G~~~~g~~~~~~~ 463 (477)
.+...+++++ +.|+++ ++++|+|+.++|+.+.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~~ 369 (377)
T PRK04965 334 RWQINAESQGMVAKGVD--EAGQLRAFVVSEDRMKEAF 369 (377)
T ss_pred eEEEEeCCCCeEEEEEc--cCCcEEEEEEEChhHHHHH
Confidence 0111122334 445555 4799999999999876543
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.8e-39 Score=341.41 Aligned_cols=358 Identities=21% Similarity=0.282 Sum_probs=259.4
Q ss_pred EEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 46 VVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 46 vvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
|||||||+||++||.+|++. +++|+|||+++.++-. .+..+.. +. .... ..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~----r~~L~~~--------------l~-g~~~-------~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN----RILLSSV--------------LQ-GEAD-------LD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc----cccccHH--------------HC-CCCC-------HH
Confidence 68999999999999999875 4699999997654210 0000000 00 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccCCc
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK 199 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~~~ 199 (477)
.+.....+++++.+++++.+ .+..+|...+.|.+.+| .++.||+||||||+.|.. +||.+..+.
T Consensus 55 -----------~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v 121 (785)
T TIGR02374 55 -----------DITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGV 121 (785)
T ss_pred -----------HccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCE
Confidence 01111234566789999987 67888988888888887 689999999999999854 455433222
Q ss_pred e-Eecchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEe
Q 011787 200 R-IVSSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML 274 (477)
Q Consensus 200 ~-~~~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~ 274 (477)
. +.+.+++..+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++.....+.+.+++.||++++
T Consensus 122 ~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~ 201 (785)
T TIGR02374 122 YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL 201 (785)
T ss_pred EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe
Confidence 1 2233343332 23578999999999999999999999999999999998876 58999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354 (477)
Q Consensus 275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD 354 (477)
++.++++..++....+++. +++++++|.||+++|.+||..+ ++.+|++.+ |+|.||+++||+.|+|||+||
T Consensus 202 ~~~v~~i~~~~~~~~v~~~-----dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD 272 (785)
T TIGR02374 202 EKDTVEIVGATKADRIRFK-----DGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYAVGE 272 (785)
T ss_pred CCceEEEEcCCceEEEEEC-----CCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEEeee
Confidence 9999999765544456554 5678999999999999999985 567788776 679999999999999999999
Q ss_pred cCCCC----CchhHHHHHHHHHHHHHcCCC-CCCCCCCCceE-EEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccc
Q 011787 355 VIPGP----MLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGV-VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRA 428 (477)
Q Consensus 355 ~~~~~----~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (477)
|+..+ .++..|..||+++|.||++.. .++......+. .+++.+++++|...... ...... +
T Consensus 273 ~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-----~~~~~~--~------ 339 (785)
T TIGR02374 273 CAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-----RTTSIK--I------ 339 (785)
T ss_pred cceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-----CcEEEE--E------
Confidence 99543 367789999999999999876 44444444433 35667889999654321 111111 0
Q ss_pred hhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHH
Q 011787 429 KAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAM 468 (477)
Q Consensus 429 ~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~ 468 (477)
....+..|.|++++ +++|+|++++|+.. +.....++
T Consensus 340 -~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~~~~L~~l 375 (785)
T TIGR02374 340 -YDEQKGIYKKLVLS--DDKLLGAVLFGDTS-DYGRLLDM 375 (785)
T ss_pred -EcCCCCEEEEEEEE--CCEEEEEEEECCHH-HHHHHHHH
Confidence 01234568999997 46899999999754 44444333
No 42
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-39 Score=309.66 Aligned_cols=284 Identities=26% Similarity=0.393 Sum_probs=225.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
+++|||||||++|+.+|..|.+.. .+|+|||+++.. .+....++.....+.......+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h--------------------l~~plL~eva~g~l~~~~i~~p 62 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH--------------------LFTPLLYEVATGTLSESEIAIP 62 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc--------------------ccchhhhhhhcCCCChhheecc
Confidence 578999999999999999999974 899999995432 1111222222222222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~ 197 (477)
+...+++. +++++.+++..+|.+.++|.+.++ ..+.||+||+|+|+.+. .+||+...
T Consensus 63 ------------------~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~fgi~G~~E~ 122 (405)
T COG1252 63 ------------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADL--GEISYDYLVVALGSETNYFGIPGAAEY 122 (405)
T ss_pred ------------------HHHHhcccCceEEEEEEEEEEcccCCEEEeCCC--ccccccEEEEecCCcCCcCCCCCHHHh
Confidence 23444433 599999999999999999999885 68999999999999984 67887766
Q ss_pred CceEecchhhhcccC-----------CC-----CeeEEEcccHHHHHHHHHHHHcC-------------CcEEEEEeCCC
Q 011787 198 EKRIVSSTGALALNE-----------VP-----KKLVVIGAGYIGLEMGSVWARLG-------------SEVTVVEFAAD 248 (477)
Q Consensus 198 ~~~~~~~~~~~~~~~-----------~~-----~~v~IiG~G~~g~e~a~~l~~~g-------------~~Vtli~~~~~ 248 (477)
...+.+.+++.+++. .. .+++|+|||++|+|+|..|+.+- .+|+++++.++
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ 202 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR 202 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence 667777777654321 12 27999999999999998886441 38999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCccc-c
Q 011787 249 IVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDK-I 326 (477)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-~i~~D~vi~a~G~~p~~~~l~~~~-~ 326 (477)
++|.+++++++.+++.|++.||++++++.|++++ ++.+.+. ++. ++++|.+|||+|.+++.. .++ .
T Consensus 203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~~-------~g~~~I~~~tvvWaaGv~a~~~---~~~l~ 270 (405)
T COG1252 203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTLK-------DGEEEIPADTVVWAAGVRASPL---LKDLS 270 (405)
T ss_pred hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEEc-------cCCeeEecCEEEEcCCCcCChh---hhhcC
Confidence 9999999999999999999999999999999994 4455543 333 699999999999999886 455 4
Q ss_pred ceeecCCCCeecCCCCC-CCCCCeEEecccCC------CCCchhHHHHHHHHHHHHHcC
Q 011787 327 GVETDKMGRIPVNERFA-TNIPGVYAIGDVIP------GPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 327 gl~~~~~g~i~vd~~l~-t~~~~vya~GD~~~------~~~~~~~A~~~g~~aa~~i~~ 378 (477)
+++.|..|++.||++|| .++|+|||+|||+. .|+.+..|.+||+++|+||..
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 78888889999999999 68999999999993 367899999999999999974
No 43
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=311.60 Aligned_cols=287 Identities=22% Similarity=0.316 Sum_probs=214.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
..++++|||||||+||+.+|.+|.+.+.+|+|||+++.. .+........... .
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~--------------------~~~~~l~~~~~g~-------~ 59 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM--------------------LFTPLLPQTTTGT-------L 59 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc--------------------chhhhHHHhcccC-------C
Confidence 345679999999999999999998778899999985432 0111111110000 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEe----------cCCceEEEEecEEEEccCCCCC
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDT----------IEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~----------~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
+... +...+...+.+.+++++.+++..+|.....|.+ .+| .++.||+||||||+.+.
T Consensus 60 ~~~~-----------~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 60 EFRS-----------ICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVAHGARPN 126 (424)
T ss_pred ChHH-----------hHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEECCCcccC
Confidence 1111 111233445567899999999999887766665 234 67999999999999984
Q ss_pred --CCCCCccCCceEecchhhhccc--------------------CCCCeeEEEcccHHHHHHHHHHHH------------
Q 011787 190 --SLPGITIDEKRIVSSTGALALN--------------------EVPKKLVVIGAGYIGLEMGSVWAR------------ 235 (477)
Q Consensus 190 --~~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~v~IiG~G~~g~e~a~~l~~------------ 235 (477)
.+||.......+.+..++..+. ...++++|||+|++|+|+|..|+.
T Consensus 127 ~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~ 206 (424)
T PTZ00318 127 TFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPE 206 (424)
T ss_pred CCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4566542222222333222110 112489999999999999998875
Q ss_pred --cCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787 236 --LGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 236 --~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
.+.+|+++++.+++++.+++.+.+.+++.|+++||+++++++|.++.. +. +.+. +++++++|.+|+++|
T Consensus 207 ~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~-----~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 207 LVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLK-----DGEVIPTGLVVWSTG 277 (424)
T ss_pred ccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEEC-----CCCEEEccEEEEccC
Confidence 368999999999999999999999999999999999999999999953 33 3343 557899999999999
Q ss_pred CCCCCCCCCccccceeecCCCCeecCCCCC-CCCCCeEEecccCCC-----CCchhHHHHHHHHHHHHHcC
Q 011787 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFA-TNIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 314 ~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~-t~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~ 378 (477)
.+|+. . ++.++++.+++|+|.||++|| |++|||||+|||+.. |..+..|++||+++|+||..
T Consensus 278 ~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 278 VGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99985 2 567788888889999999999 699999999999963 56888999999999999974
No 44
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=7.8e-37 Score=291.72 Aligned_cols=291 Identities=26% Similarity=0.321 Sum_probs=211.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
|||+|||||+||++||..|++.|.+|+|||+++ .||.+.....+.. +. ++.. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~----------------~~--~~~~---~~~~-- 56 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVEN----------------YP--GFPE---GISG-- 56 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccc----------------cC--CCCC---CCCh--
Confidence 689999999999999999999999999999865 7887654321100 00 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCcc-CC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI-DE 198 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~-~~ 198 (477)
..+...+...+++.+++++...+..++.. .+.+.+.++ .++.||+||+|||+.|.. +|+... ..
T Consensus 57 ---------~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~ 125 (300)
T TIGR01292 57 ---------PELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLG 125 (300)
T ss_pred ---------HHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCC
Confidence 11223344556677888888777666543 356666665 689999999999998753 444321 11
Q ss_pred ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc-CcEEEeCce
Q 011787 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFMLKTK 277 (477)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~ 277 (477)
..+............+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+.. . ..+.+.++++ ||+++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~----~~~~~~l~~~~gv~~~~~~~ 199 (300)
T TIGR01292 126 RGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--E----KILLDRLRKNPNIEFLWNST 199 (300)
T ss_pred ccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--C----HHHHHHHHhCCCeEEEeccE
Confidence 22222221112223478999999999999999999999999999999876531 2 3455666776 999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (477)
Q Consensus 278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~ 357 (477)
+++++.++....+++.+..++++.++++|.+++|+|++|+.++ ++.. +.++++|++.||++++|++|||||+|||++
T Consensus 200 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~ 276 (300)
T TIGR01292 200 VKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRD 276 (300)
T ss_pred EEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCEEEeecccC
Confidence 9999865533345554434456678999999999999999875 4555 677788999999999999999999999998
Q ss_pred -CCCchhHHHHHHHHHHHHHcC
Q 011787 358 -GPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 358 -~~~~~~~A~~~g~~aa~~i~~ 378 (477)
.+..+..|+.||+.||.+|..
T Consensus 277 ~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 277 KGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred cchhhhhhhhhhHHHHHHHHHh
Confidence 677899999999999999863
No 45
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.1e-35 Score=301.72 Aligned_cols=292 Identities=25% Similarity=0.316 Sum_probs=205.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...|||+||||||||++||..|++.|++|+|+|+ ..+||+|....++...+ +.. ...
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~~~~i~~~p------------------g~~----~~~ 58 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITITSEVVNYP------------------GIL----NTT 58 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEeccccccCC------------------CCc----CCC
Confidence 3469999999999999999999999999999999 57899876543321100 000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc-
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT- 195 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~- 195 (477)
.. .+...+....+..+++++.+.+..++.. .+.+.+.++ .+.+++||||||++|+. +||..
T Consensus 59 ~~-----------~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~~~ipG~~~ 124 (555)
T TIGR03143 59 GP-----------ELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASPRKLGFPGEEE 124 (555)
T ss_pred HH-----------HHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCccCCCCCCCHHH
Confidence 11 1222233445566888887777666543 345665554 58899999999999854 34432
Q ss_pred cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (477)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 275 (477)
.....+............+++++|||||++|+|+|..|++.|.+|+++++.+.+.. +... ..+.++.+||+++++
T Consensus 125 ~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~ 199 (555)
T TIGR03143 125 FTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFN 199 (555)
T ss_pred hCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeC
Confidence 12233333222222233589999999999999999999999999999999886532 2222 233345579999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEE--EcCE----EEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787 276 TKVVGVDLSGDGVKLTLEPAAGGEKTIL--EADV----VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (477)
Q Consensus 276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i--~~D~----vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v 349 (477)
+.|+++..++....+.+.+..++...++ ++|. |++++|++||+.+ ++ .++.++++|+|.||++++|++|+|
T Consensus 200 ~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l--~~-~~l~l~~~G~I~vd~~~~Ts~p~I 276 (555)
T TIGR03143 200 TELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSEL--FK-GVVELDKRGYIPTNEDMETNVPGV 276 (555)
T ss_pred CEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhH--Hh-hhcccCCCCeEEeCCccccCCCCE
Confidence 9999997544322344433233333343 3676 9999999999985 33 357888889999999999999999
Q ss_pred EEecccCC-CCCchhHHHHHHHHHHHHHc
Q 011787 350 YAIGDVIP-GPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 350 ya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 377 (477)
||+|||+. .+..+..|+.||+.||.+|.
T Consensus 277 yAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 277 YAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred EEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999985 34567889999999999985
No 46
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.5e-35 Score=300.68 Aligned_cols=292 Identities=29% Similarity=0.391 Sum_probs=213.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...+||+||||||||++||..|++.|++|+|+++ .+||++.....++. + .+.. ...
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~ 265 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIEN----------------L--ISVP----YTT 265 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCccc----------------c--cccC----CCC
Confidence 4569999999999999999999999999999975 58998653211110 0 0000 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~ 195 (477)
+.+ +...+...+++++++++.+ .+..++ .+.+.+.+.+| ..+.||++|+|||+.++. +|+..
T Consensus 266 ~~~-----------l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ipG~~ 332 (515)
T TIGR03140 266 GSQ-----------LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLGVPGEK 332 (515)
T ss_pred HHH-----------HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCCCCCHH
Confidence 211 2223344556678888775 455443 34567777666 579999999999998753 34432
Q ss_pred -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcEEE
Q 011787 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM 273 (477)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~ 273 (477)
.....+............+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++ .||+++
T Consensus 333 ~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~ 406 (515)
T TIGR03140 333 EYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDIL 406 (515)
T ss_pred HcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEE
Confidence 11223333222222223578999999999999999999999999999998876532 2345666765 599999
Q ss_pred eCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787 274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (477)
Q Consensus 274 ~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~ 352 (477)
+++.++++..+++++. +++.+..+++.+++++|.|++++|++||+++ ++.. +.++++|+|.||+++||++|+|||+
T Consensus 407 ~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~--l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAa 483 (515)
T TIGR03140 407 TSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW--LKDA-VELNRRGEIVIDERGRTSVPGIFAA 483 (515)
T ss_pred ECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH--Hhhh-cccCCCCeEEECCCCCCCCCCEEEc
Confidence 9999999987655554 6665444455578999999999999999986 4454 7778889999999999999999999
Q ss_pred cccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787 353 GDVIPGP-MLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 353 GD~~~~~-~~~~~A~~~g~~aa~~i~~ 378 (477)
|||+..+ .++..|+.+|..||.+|..
T Consensus 484 GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 484 GDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred ccccCCccceEEEEEccHHHHHHHHHH
Confidence 9999865 4678899999999999864
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.9e-35 Score=294.88 Aligned_cols=282 Identities=26% Similarity=0.294 Sum_probs=206.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
....++|+||||||||++||..|++.|++|+|+|+.+.+||++.+ + +|... .
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-g-ip~~~--------------------------~ 181 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-G-IPEFR--------------------------L 181 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-c-CCCcc--------------------------C
Confidence 345689999999999999999999999999999998889987532 1 22100 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCC--CCCCcc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKS--LPGITI 196 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~--~~g~~~ 196 (477)
+ .+ +.......+.+.+++++.+.... ..+.+.+. ...||+||||||+ .|+. +|+.+
T Consensus 182 ~-~~-----------~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~~~---~~~yd~viiAtGa~~p~~~~ipG~~- 240 (449)
T TIGR01316 182 P-KE-----------IVVTEIKTLKKLGVTFRMNFLVG-----KTATLEEL---FSQYDAVFIGTGAGLPKLMNIPGEE- 240 (449)
T ss_pred C-HH-----------HHHHHHHHHHhCCcEEEeCCccC-----CcCCHHHH---HhhCCEEEEeCCCCCCCcCCCCCCC-
Confidence 0 00 01111233556789888775321 12333222 2469999999998 5643 44433
Q ss_pred CCceEecchhhhcc---------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHH
Q 011787 197 DEKRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQ 260 (477)
Q Consensus 197 ~~~~~~~~~~~~~~---------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~ 260 (477)
...+++..++... ...+++++|||+|.+|+|+|..+.+.|.+||++++.++. ++.. ..
T Consensus 241 -~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~ 314 (449)
T TIGR01316 241 -LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VE 314 (449)
T ss_pred -CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HH
Confidence 3446665554321 124689999999999999999999999999999988653 2221 22
Q ss_pred HHHHHHhcCcEEEeCceEEEEEEcC-CeE-EEEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCCc
Q 011787 261 FQRSLEKQKMKFMLKTKVVGVDLSG-DGV-KLTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLGL 323 (477)
Q Consensus 261 ~~~~l~~~gv~~~~~~~v~~i~~~~-~~~-~v~~~~~------~---------~~~~~~i~~D~vi~a~G~~p~~~~l~~ 323 (477)
..+.+++.||++++++.++++..++ +++ .+++... . .++...+++|.||+++|..|+..+ +
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l 392 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--A 392 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--h
Confidence 3356788899999999999997643 434 2444310 0 123457999999999999999865 6
Q ss_pred cccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 324 ~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
+..+++++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred hccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 7778988888999999999999999999999999898999999999999999864
No 48
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.6e-35 Score=280.20 Aligned_cols=295 Identities=20% Similarity=0.248 Sum_probs=208.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..+||+||||||||++||..|+++|++++++|+ ...||.+....... .++......+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~~~~---------------------~~~~~~~~~~~ 62 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVE---------------------NWPGDPNDLTG 62 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCceEC---------------------CCCCCCCCCCH
Confidence 468999999999999999999999999999996 46788765432110 00000011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCc-c
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGIT-I 196 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~-~ 196 (477)
+.+. ..+.......++++..+.+..++ .+.+.+.... ..+.||+||||||+.|+.+ |+.. .
T Consensus 63 ~~~~-----------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~---~~~~~d~vilAtG~~~~~~~i~g~~~~ 128 (321)
T PRK10262 63 PLLM-----------ERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS---GEYTCDALIIATGASARYLGLPSEEAF 128 (321)
T ss_pred HHHH-----------HHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC---CEEEECEEEECCCCCCCCCCCCCHHHc
Confidence 2222 12223334445566665544443 3444554433 3689999999999998543 4432 1
Q ss_pred CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (477)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 276 (477)
....+............+++++|||+|.+|+|+|..|++.+.+|+++++.+.+. .++.+.+.+++.|++.||++++++
T Consensus 129 ~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~ 206 (321)
T PRK10262 129 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNR 206 (321)
T ss_pred CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCC
Confidence 223333333333334468999999999999999999999999999999987652 356677888899999999999999
Q ss_pred eEEEEEEcCCeE-EEEEeecC-CCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCC-----CCCCCCCCe
Q 011787 277 KVVGVDLSGDGV-KLTLEPAA-GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-----RFATNIPGV 349 (477)
Q Consensus 277 ~v~~i~~~~~~~-~v~~~~~~-~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-----~l~t~~~~v 349 (477)
.++++..++.++ .+++.+.. .++.+++++|.|++++|++||...+ + .++.++ +|+|.||+ +++|++|+|
T Consensus 207 ~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~t~~~~V 282 (321)
T PRK10262 207 TLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGV 282 (321)
T ss_pred EEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccccCCCCE
Confidence 999997765433 35554322 2234689999999999999999853 2 245553 58899997 678999999
Q ss_pred EEecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787 350 YAIGDVIPG-PMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 350 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 378 (477)
||+|||++. +.....|+.+|..||..|..
T Consensus 283 yA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 283 FAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred EECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 999999964 45677799999999998864
No 49
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.2e-34 Score=294.53 Aligned_cols=292 Identities=31% Similarity=0.436 Sum_probs=215.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...|||+||||||||++||.+|++.|++|+|+++ .+||+|.....++. + .++. ...
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~ 264 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIEN----------------F--ISVP----ETE 264 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccc----------------c--CCCC----CCC
Confidence 3468999999999999999999999999999986 48998753211110 0 0000 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~ 195 (477)
+.+ +...+...++++++++..+ .+..++. +.+.+.+.+| .++.||+||+|||++++. +|+..
T Consensus 265 ~~~-----------l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~ 331 (517)
T PRK15317 265 GPK-----------LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGED 331 (517)
T ss_pred HHH-----------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHH
Confidence 222 2333445566778888765 4655544 3667777666 579999999999998853 34432
Q ss_pred -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcEEE
Q 011787 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM 273 (477)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~ 273 (477)
.....++...........+++++|||+|.+|+|+|..|+..+.+|+++++.+.+.. + ..+.+.+.+ .||+++
T Consensus 332 ~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~ 405 (517)
T PRK15317 332 EYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTII 405 (517)
T ss_pred HhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEE
Confidence 22233333322222233578999999999999999999999999999999876532 2 334555554 599999
Q ss_pred eCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787 274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (477)
Q Consensus 274 ~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~ 352 (477)
+++.+.++..+++.+. +++.+..+++..++++|.+++++|++||+++ ++.. +.++++|+|.||+++||++|+||||
T Consensus 406 ~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAa 482 (517)
T PRK15317 406 TNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--LKGT-VELNRRGEIIVDARGATSVPGVFAA 482 (517)
T ss_pred ECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--Hhhh-eeeCCCCcEEECcCCCCCCCCEEEC
Confidence 9999999987755544 5665444455568999999999999999986 4444 7788889999999999999999999
Q ss_pred cccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787 353 GDVIPGP-MLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 353 GD~~~~~-~~~~~A~~~g~~aa~~i~~ 378 (477)
|||+..+ .....|+.+|..||.++..
T Consensus 483 GDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 483 GDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred ccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 9999765 5788999999999988864
No 50
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=270.11 Aligned_cols=289 Identities=28% Similarity=0.366 Sum_probs=214.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
..+||+|||||||||+||.++++.+++ ++|+|+ ...||+.....-+.. + .|++. ...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~ven----------------y--pg~~~---~~~ 59 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDVEN----------------Y--PGFPG---GIL 59 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccceeecC----------------C--CCCcc---CCc
Confidence 468999999999999999999999999 555555 667765332211110 0 01110 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc-
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT- 195 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~- 195 (477)
... +.+...+...+.++++....+..++.. .+.|.+.++ . +.+++||||||..++. +|+..
T Consensus 60 g~~-----------L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~--~-~~ak~vIiAtG~~~~~~~~~~e~e 125 (305)
T COG0492 60 GPE-----------LMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG--T-YEAKAVIIATGAGARKLGVPGEEE 125 (305)
T ss_pred hHH-----------HHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC--e-EEEeEEEECcCCcccCCCCCcchh
Confidence 222 233334455567888888777776654 678888887 3 9999999999998753 34322
Q ss_pred cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc-CcEEEe
Q 011787 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFML 274 (477)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~ 274 (477)
..+..+..+..+.. ...+++++|||||.+++|.|..|++.+.+||+++|++.+.+ .+.+.+.+++. +|++++
T Consensus 126 ~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~ 198 (305)
T COG0492 126 FEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLT 198 (305)
T ss_pred hcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEe
Confidence 33445555544444 45578999999999999999999999999999999998754 23445555555 899999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354 (477)
Q Consensus 275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD 354 (477)
++.+.++..++ ...+.+.+.. +....+.+|.+++++|..|++.+ ++..++ ++++|+|.+|+.++||+|+||||||
T Consensus 199 ~~~i~ei~G~~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGD 273 (305)
T COG0492 199 NTVVKEILGDD-VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAGD 273 (305)
T ss_pred CCceeEEecCc-cceEEEEecC-CceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccCCCCEEEeEe
Confidence 99999998776 3345555433 45678999999999999999986 555555 7889999999999999999999999
Q ss_pred cCCCCC-chhHHHHHHHHHHHHHcC
Q 011787 355 VIPGPM-LAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 355 ~~~~~~-~~~~A~~~g~~aa~~i~~ 378 (477)
++..+. +...|..+|..||.++..
T Consensus 274 v~~~~~rqi~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 274 VADKNGRQIATAAGDGAIAALSAER 298 (305)
T ss_pred eccCcccEEeehhhhHHHHHHHHHH
Confidence 997654 788899999999887754
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.8e-35 Score=290.84 Aligned_cols=287 Identities=24% Similarity=0.245 Sum_probs=205.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
....+||+||||||||++||..|++.|++|+|+|+.+.+||++.+ .+|...+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~l-------------------------- 188 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY--GIPEFRL-------------------------- 188 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee--cCCCccC--------------------------
Confidence 345689999999999999999999999999999998889998642 1221100
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCCCCCCccCC
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGITIDE 198 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~~~g~~~~~ 198 (477)
+-.. +.....+.+++.++++..++... . .+...+. ...+.||+||||||+ .|+.++..+.+.
T Consensus 189 ~~~~-----------~~~~~~~~~~~~gv~i~~~~~v~---~--~v~~~~~-~~~~~~d~viiAtGa~~~~~l~ipG~~~ 251 (464)
T PRK12831 189 PKET-----------VVKKEIENIKKLGVKIETNVVVG---K--TVTIDEL-LEEEGFDAVFIGSGAGLPKFMGIPGENL 251 (464)
T ss_pred CccH-----------HHHHHHHHHHHcCCEEEcCCEEC---C--cCCHHHH-HhccCCCEEEEeCCCCCCCCCCCCCcCC
Confidence 0000 11111234556788887775331 1 1222221 124569999999998 465433222334
Q ss_pred ceEecchhhhcc--------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHHHHH
Q 011787 199 KRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQFQR 263 (477)
Q Consensus 199 ~~~~~~~~~~~~--------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~~~~ 263 (477)
..+++..+++.. ...+++|+|||+|++|+|+|..+.+.|.+|+++++.+.. ++....+ + +
T Consensus 252 ~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e----~-~ 326 (464)
T PRK12831 252 NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----V-H 326 (464)
T ss_pred cCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----H-H
Confidence 457776665432 135799999999999999999999999999999987642 3322222 2 2
Q ss_pred HHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec-----C----------CCceEEEEcCEEEEeecCCCCCCCCCccc-
Q 011787 264 SLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA-----A----------GGEKTILEADVVLVSAGRTPFTAGLGLDK- 325 (477)
Q Consensus 264 ~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~-----~----------~~~~~~i~~D~vi~a~G~~p~~~~l~~~~- 325 (477)
.+++.||++++++.+.++..++ +.+. +.+... . +++..++++|.||+++|..|+..+ ++.
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~~~ 404 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI--SSTT 404 (464)
T ss_pred HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--hccc
Confidence 3567899999999999997643 3332 333210 0 233457999999999999999875 344
Q ss_pred cceeecCCCCeecCCC-CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 326 IGVETDKMGRIPVNER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 326 ~gl~~~~~g~i~vd~~-l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
.|+.++++|+|.||++ ++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 405 ~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 405 KGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 6888888899999998 9999999999999999888999999999999999864
No 52
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=9.5e-35 Score=284.36 Aligned_cols=281 Identities=21% Similarity=0.272 Sum_probs=207.4
Q ss_pred cEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 45 DVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
+|||||||+||+.+|.+|+++ +.+|+|||+++.. .+..+.|. +..... +.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~~~~~~~----------------~~~g~~-------~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG----------------MIAGHY-------SL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cccchhhH----------------HHheeC-------CH
Confidence 589999999999999999744 6899999986432 00001110 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccCCc
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEK 199 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~~~ 199 (477)
+.+...+.+++++.+++++.+.+..+|.....|.+.+| ++++||+||||||+.+. .+|+......
T Consensus 54 -----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~ 120 (364)
T TIGR03169 54 -----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAV 120 (364)
T ss_pred -----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCccccccc
Confidence 01111233455667999999999999988888888887 67999999999999985 3455321111
Q ss_pred eEecchhhhc--------c--cCCCCeeEEEcccHHHHHHHHHHHH----cC--CcEEEEEeCCCcCCCCCHHHHHHHHH
Q 011787 200 RIVSSTGALA--------L--NEVPKKLVVIGAGYIGLEMGSVWAR----LG--SEVTVVEFAADIVPSMDGEIRKQFQR 263 (477)
Q Consensus 200 ~~~~~~~~~~--------~--~~~~~~v~IiG~G~~g~e~a~~l~~----~g--~~Vtli~~~~~~~~~~~~~~~~~~~~ 263 (477)
.+.+.+++.. . ...+++++|+|+|++|+|+|..|++ .| .+|+++ ..+.+++.+++++...+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~ 199 (364)
T TIGR03169 121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR 199 (364)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH
Confidence 1222222211 1 1235799999999999999999875 34 489999 6677788888999999999
Q ss_pred HHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCC
Q 011787 264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343 (477)
Q Consensus 264 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~ 343 (477)
.|++.||++++++.+++++. + .+.+. ++.++++|.+++|+|.+|+.. +...++.++++|++.||+++|
T Consensus 200 ~l~~~gV~v~~~~~v~~i~~--~--~v~~~-----~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~~l~ 267 (364)
T TIGR03169 200 LLARRGIEVHEGAPVTRGPD--G--ALILA-----DGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQ 267 (364)
T ss_pred HHHHCCCEEEeCCeeEEEcC--C--eEEeC-----CCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECCccc
Confidence 99999999999999999853 3 34433 457899999999999999864 455678888889999999999
Q ss_pred C-CCCCeEEecccCCC-----CCchhHHHHHHHHHHHHHcC
Q 011787 344 T-NIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 344 t-~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~ 378 (477)
| ++|+|||+|||+.. +..+..|++||+++|+||..
T Consensus 268 ~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 268 SLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred cCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 7 99999999999953 34677899999999999963
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=6.3e-34 Score=297.53 Aligned_cols=283 Identities=24% Similarity=0.309 Sum_probs=205.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
.+.++|+||||||||++||..|++.|++|+|+|+.+.+||++.+ .+|...+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~--~IP~~Rlp-------------------------- 588 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN--IIPQFRIP-------------------------- 588 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee--eccccccc--------------------------
Confidence 35679999999999999999999999999999999899997643 23322110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~ 200 (477)
. + ......+++.+.++++..+.... +...+. ....||+||||||++++.+++++.....
T Consensus 589 ~-e-----------vL~~die~l~~~GVe~~~gt~Vd-------i~le~L--~~~gYDaVILATGA~~~~~l~IpG~~~g 647 (1019)
T PRK09853 589 A-E-----------LIQHDIEFVKAHGVKFEFGCSPD-------LTVEQL--KNEGYDYVVVAIGADKNGGLKLEGGNQN 647 (1019)
T ss_pred H-H-----------HHHHHHHHHHHcCCEEEeCceeE-------EEhhhh--eeccCCEEEECcCCCCCCCCCCCCccCC
Confidence 0 0 01111234556789988775431 222222 4556999999999986433333222234
Q ss_pred Eecchhhhcc-------cCCCCeeEEEcccHHHHHHHHHHHHc-C-CcEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCc
Q 011787 201 IVSSTGALAL-------NEVPKKLVVIGAGYIGLEMGSVWARL-G-SEVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 201 ~~~~~~~~~~-------~~~~~~v~IiG~G~~g~e~a~~l~~~-g-~~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv 270 (477)
+++..+++.. ...+++|+|||||.+|+|+|..+.+. | .+|+++.|++. .+|..++++ .+.+ +.||
T Consensus 648 V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Al-eeGV 722 (1019)
T PRK09853 648 VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----EEAL-EDGV 722 (1019)
T ss_pred ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----HHHH-HcCC
Confidence 5554443321 23589999999999999999998887 4 48999998763 455544433 3333 4699
Q ss_pred EEEeCceEEEEEEcCCeEEEEE---e---------ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeec
Q 011787 271 KFMLKTKVVGVDLSGDGVKLTL---E---------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~~~~~v~~---~---------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~v 338 (477)
++++.+.+.++.. ++++.+.. . ...++++.++++|.||+|+|..|+..+ ++..|+.++++|++.|
T Consensus 723 e~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~G~I~V 799 (1019)
T PRK09853 723 EFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVV 799 (1019)
T ss_pred EEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCCCCEEe
Confidence 9999999998864 33333211 0 011345678999999999999999986 5677888888899999
Q ss_pred CCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (477)
Q Consensus 339 d~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 380 (477)
|+.++|+.|+|||+|||+.+|.++..|+.+|+.||++|++..
T Consensus 800 DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 800 DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999889999999999999999998643
No 54
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=7.3e-34 Score=279.03 Aligned_cols=349 Identities=23% Similarity=0.281 Sum_probs=255.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchh-hhhhhHHHHHHHhhhhhCCccccccc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKA-LLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
+.+++|||.|+||..+..++.+. -++|+++-.++.+. ..+ +++.. ++. .
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----------Y~Ri~Ls~v---------l~~--------~ 55 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----------YNRILLSSV---------LAG--------E 55 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----------ccceeeccc---------cCC--------C
Confidence 46899999999999999999884 46899997654321 100 00000 000 0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccC
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID 197 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~ 197 (477)
.+ .+.+.-.-.+|+++++++++.+ .+.++|...+.|.++.| .++.||+||+||||.|..+|....+
T Consensus 56 ~~-----------~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~PiPG~~ 122 (793)
T COG1251 56 KT-----------AEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSD 122 (793)
T ss_pred cc-----------HHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCCCCCC
Confidence 00 1112222346888999999988 68899999999999998 8999999999999999766644444
Q ss_pred CceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787 198 EKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 198 ~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv 270 (477)
...++..++..++ .+..++.+|||||..|+|+|..|...|.++++++-.+.++- .+|+.....+++.+++.|+
T Consensus 123 ~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi 202 (793)
T COG1251 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGI 202 (793)
T ss_pred CCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcc
Confidence 4444444333322 23356689999999999999999999999999999988864 7899999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy 350 (477)
+++++....++...+....+.+. ++..+++|.|++++|.+||... ...+|+.+++ +|.||++|||+.|+||
T Consensus 203 ~~~l~~~t~ei~g~~~~~~vr~~-----DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpdIY 273 (793)
T COG1251 203 KVLLEKNTEEIVGEDKVEGVRFA-----DGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPDIY 273 (793)
T ss_pred eeecccchhhhhcCcceeeEeec-----CCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCCee
Confidence 99999999888775555567766 7889999999999999999997 7888999987 7999999999999999
Q ss_pred EecccCC----CCCchhHHHHHHHHHHHHHcCCCCC-CCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecC--
Q 011787 351 AIGDVIP----GPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFL-- 423 (477)
Q Consensus 351 a~GD~~~----~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-- 423 (477)
|+|+|+. .+.+...+..|++++|.|+++.... +.... ++ ..++..|+++-+.. ++.
T Consensus 274 AvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv-~s---------------tkLKv~Gvdl~S~G-D~~e~ 336 (793)
T COG1251 274 AVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSV-TS---------------TKLKVSGVDVFSAG-DFQET 336 (793)
T ss_pred ehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccccc-ch---------------hhhcccccceeecc-chhhc
Confidence 9999993 4568888999999999999987542 21111 11 12223333332221 111
Q ss_pred ccccch-hcCCC-ceEEEEEEECCCCeEEEEEEEcCCh
Q 011787 424 ANSRAK-AIDDA-EGIVKILAEKETDKILGVHIMAPNA 459 (477)
Q Consensus 424 ~~~~~~-~~~~~-~~~~k~~~~~~~~~i~G~~~~g~~~ 459 (477)
...... +.++. ..|-|+++ ++++|+|+.++|+.+
T Consensus 337 ~~~~~iv~~D~~~~iYKrlvL--~dd~IvgavL~GDt~ 372 (793)
T COG1251 337 EGAESIVFRDEQRGIYKKLVL--KDDKIVGAVLYGDTS 372 (793)
T ss_pred CCCceEEEecccccceeEEEE--eCCeEEEEEEEeecc
Confidence 111111 22333 34666776 367999999999864
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.1e-33 Score=281.84 Aligned_cols=282 Identities=26% Similarity=0.316 Sum_probs=204.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...++|+||||||||+++|..|++.|++|+|+|+.+.+||...+ + +|...+ +
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-g-ip~~~~--------------------------~ 189 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-G-IPEFRL--------------------------P 189 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-c-CCCccC--------------------------C
Confidence 44689999999999999999999999999999998888886432 1 121100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~ 197 (477)
. .+.......+++.++++..++... . .+...+. .+.||+||+|||+. ++ .+|+.+
T Consensus 190 -~-----------~~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~~~i~G~~-- 247 (457)
T PRK11749 190 -K-----------DIVDREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRFLGIPGEN-- 247 (457)
T ss_pred -H-----------HHHHHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCCCCCCCcc--
Confidence 0 011122344556788888776431 1 1222222 37899999999996 43 234432
Q ss_pred CceEecchhhhccc---------CCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHHHHHHHHH
Q 011787 198 EKRIVSSTGALALN---------EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRKQFQRSLE 266 (477)
Q Consensus 198 ~~~~~~~~~~~~~~---------~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~~~~~~l~ 266 (477)
...+++..++.... ..+++++|||+|.+|+|+|..+.+.|. +|+++++.+.. ++..+. ..+.++
T Consensus 248 ~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~ 322 (457)
T PRK11749 248 LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAK 322 (457)
T ss_pred CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHH
Confidence 33455544433211 257999999999999999999999998 89999987643 443222 345678
Q ss_pred hcCcEEEeCceEEEEEEcCCeE-EEEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCccccceeec
Q 011787 267 KQKMKFMLKTKVVGVDLSGDGV-KLTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331 (477)
Q Consensus 267 ~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~ 331 (477)
+.||++++++.+.++..+++++ .+++... .++++.++++|.||+++|.+|+..++ .+..++.++
T Consensus 323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~ 401 (457)
T PRK11749 323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELN 401 (457)
T ss_pred HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCC
Confidence 8999999999999998765442 1333211 12355689999999999999997643 345678888
Q ss_pred CCCCeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 332 KMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 332 ~~g~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
++|+|.||+ +++|++|+|||+|||+..+.++..|+.||+.||.+|..
T Consensus 402 ~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 402 RWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred CCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 889999998 78999999999999998888899999999999999864
No 56
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=4.2e-33 Score=293.01 Aligned_cols=280 Identities=27% Similarity=0.343 Sum_probs=202.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+||||||||++||..|++.|++|+|+|+++.+||++.+. +|...+. .
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~--IP~~rlp--------------------------~ 587 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFRIS--------------------------A 587 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec--ccccCCC--------------------------H
Confidence 45899999999999999999999999999999999999986432 3322110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~ 201 (477)
+ ......+.+.+.+|++..+... ...+ .+. ....||+||||||++++.++.++.....+
T Consensus 588 -e-----------~l~~~ie~l~~~GVe~~~g~~~-----d~~v--e~l--~~~gYDaVIIATGA~~~~~l~I~G~~~~v 646 (1012)
T TIGR03315 588 -E-----------SIQKDIELVKFHGVEFKYGCSP-----DLTV--AEL--KNQGYKYVILAIGAWKHGPLRLEGGGERV 646 (1012)
T ss_pred -H-----------HHHHHHHHHHhcCcEEEEeccc-----ceEh--hhh--hcccccEEEECCCCCCCCCCCcCCCCcce
Confidence 0 0011123445568888776321 1122 121 34569999999999864333333222345
Q ss_pred ecchhhhc-------ccCCCCeeEEEcccHHHHHHHHHHHHc-CC-cEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCcE
Q 011787 202 VSSTGALA-------LNEVPKKLVVIGAGYIGLEMGSVWARL-GS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKMK 271 (477)
Q Consensus 202 ~~~~~~~~-------~~~~~~~v~IiG~G~~g~e~a~~l~~~-g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv~ 271 (477)
++..++.. ....+++|+|||||.+|+|+|..+.+. |. +|+++++++. .++..++++ .+.+ +.||+
T Consensus 647 ~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe 721 (1012)
T TIGR03315 647 LKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----EEAL-EDGVD 721 (1012)
T ss_pred eeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----HHHH-HcCCE
Confidence 55444332 124589999999999999999998876 75 7999998763 455554443 3333 46999
Q ss_pred EEeCceEEEEEEcCCeEEEEEe------------ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecC
Q 011787 272 FMLKTKVVGVDLSGDGVKLTLE------------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~~~~v~~~------------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd 339 (477)
+++...+.++. ++++.+... ...+++..++++|.||+|+|..|+..+ ++..|+.++++|++.||
T Consensus 722 ~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~G~I~VD 797 (1012)
T TIGR03315 722 FKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVN 797 (1012)
T ss_pred EEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCCCCEEeC
Confidence 99999888886 344433211 011345568999999999999999986 56788988888999999
Q ss_pred CC-CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787 340 ER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 340 ~~-l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 379 (477)
++ ++|+.|+|||+|||+.+|..+..|+.||+.||.+|++.
T Consensus 798 ~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 798 QATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 86 89999999999999988999999999999999999854
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1e-32 Score=267.81 Aligned_cols=289 Identities=26% Similarity=0.335 Sum_probs=200.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
...+|+|||+|++|+++|..|++.|++|+++|+.+.+||..... .+.. ..+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~--------------------------~~~~ 68 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEF--------------------------RIPI 68 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--Cccc--------------------------ccCH
Confidence 45799999999999999999999999999999988888864321 0100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec-C------CEEEEEecCCceEEEEecEEEEccCCC-CC--CC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-P------SEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SL 191 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~------~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~ 191 (477)
.. +..... .+.+.+++++.++....+ . ..+.......+...+.||+||||||+. +. .+
T Consensus 69 ~~-----------~~~~~~-~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i 136 (352)
T PRK12770 69 ER-----------VREGVK-ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI 136 (352)
T ss_pred HH-----------HHHHHH-HHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC
Confidence 00 011111 233447887776543221 1 111111111111247899999999994 43 33
Q ss_pred CCCccCCceEecchhhhc-----------ccC----CCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcCCCCCH
Q 011787 192 PGITIDEKRIVSSTGALA-----------LNE----VPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVPSMDG 255 (477)
Q Consensus 192 ~g~~~~~~~~~~~~~~~~-----------~~~----~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~ 255 (477)
|+. +...+++..+... ... .+++++|||+|++|+|+|..|.+.|.+ |+++.+.+.....
T Consensus 137 pg~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~--- 211 (352)
T PRK12770 137 PGE--DLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP--- 211 (352)
T ss_pred CCc--cccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC---
Confidence 443 3334555432211 111 258999999999999999999999987 9999987643211
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec---------------CCCceEEEEcCEEEEeecCCCCCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
......+.|+++||++++++.+.+++.++....+++.+. .++++.++++|.+++++|++|+..+
T Consensus 212 -~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l 290 (352)
T PRK12770 212 -AGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF 290 (352)
T ss_pred -CCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh
Confidence 113345568899999999999999976543333443221 1345678999999999999999864
Q ss_pred CCccc-cceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 321 LGLDK-IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 321 l~~~~-~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
..+ .|+.++++|++.||++++|+.|+|||+|||+..|.....|+.||+.||.+|..
T Consensus 291 --~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 291 --AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred --hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 333 78888888999999999999999999999998888999999999999999864
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.7e-32 Score=290.22 Aligned_cols=282 Identities=24% Similarity=0.298 Sum_probs=204.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+|||||||||+||..|++.|++|+|+|+.+.+||...+ + +|...+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-G-IP~~rlp~-------------------------- 356 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-G-IPEFRLPN-------------------------- 356 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-c-CCCCcChH--------------------------
Confidence 4689999999999999999999999999999999999997432 2 44321100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~~ 198 (477)
+ +.+...+.++..|+++..+.... ..+..++. ....||+|+||||+. |+. +|| .+.
T Consensus 357 -~-----------vi~~~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l~IpG--~dl 415 (944)
T PRK12779 357 -Q-----------LIDDVVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFMNVPG--EHL 415 (944)
T ss_pred -H-----------HHHHHHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcCCCCC--CcC
Confidence 0 11111234556789888775432 22444433 445799999999995 543 444 334
Q ss_pred ceEecchhhhcc----------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-cCCCCCHHHHHHH
Q 011787 199 KRIVSSTGALAL----------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IVPSMDGEIRKQF 261 (477)
Q Consensus 199 ~~~~~~~~~~~~----------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~~~~ 261 (477)
..+++..+++.. ...+++|+|||||.+|+++|..+.+.|.+|+++++++. .+|... ..+
T Consensus 416 ~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~----~e~ 491 (944)
T PRK12779 416 LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV----EEL 491 (944)
T ss_pred cCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH----HHH
Confidence 567776665421 11468999999999999999999999999999998764 244322 223
Q ss_pred HHHHHhcCcEEEeCceEEEEEEcCC--eEE-EEEe--------------ecCCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787 262 QRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLE--------------PAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (477)
Q Consensus 262 ~~~l~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~--------------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (477)
.+. .+.||+++++..++++..+++ .+. +.+. ...+++..++++|.||+|+|..|+... ...
T Consensus 492 ~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~ 569 (944)
T PRK12779 492 HHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDA 569 (944)
T ss_pred HHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhc
Confidence 333 467999999999999976532 232 2221 001234467999999999999999753 234
Q ss_pred ccceeecCCCCeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 325 KIGVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 325 ~~gl~~~~~g~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
..+++.+++|.|.||+ .++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 570 ~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 570 EPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred ccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4578888889999997 48899999999999999888999999999999999964
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-32 Score=290.66 Aligned_cols=283 Identities=26% Similarity=0.331 Sum_probs=204.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...+||+||||||||++||..|++.|++|+|+|+.+.+||...+ .+|...+ +
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~rl--------------------------p 480 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFRL--------------------------P 480 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCCC--------------------------C
Confidence 35689999999999999999999999999999998889997432 1232110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~ 197 (477)
- + +.....+.+.+.++++..+.... . .+...+. ....||+||||||+. |+. +||. +
T Consensus 481 ~-~-----------~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~l--~~~~ydavvlAtGa~~~~~l~ipG~--~ 539 (752)
T PRK12778 481 K-K-----------IVDVEIENLKKLGVKFETDVIVG---K--TITIEEL--EEEGFKGIFIASGAGLPNFMNIPGE--N 539 (752)
T ss_pred H-H-----------HHHHHHHHHHHCCCEEECCCEEC---C--cCCHHHH--hhcCCCEEEEeCCCCCCCCCCCCCC--C
Confidence 0 0 00111234556788887765321 1 2222222 346799999999984 543 4443 3
Q ss_pred CceEecchhhhcc--------------cCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-CCCCCHHHHHHH
Q 011787 198 EKRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF 261 (477)
Q Consensus 198 ~~~~~~~~~~~~~--------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-~~~~~~~~~~~~ 261 (477)
...+++..+++.. ...+++|+|||||.+|+|+|..+.+.|.+ |+++++++.. ++....++
T Consensus 540 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~---- 615 (752)
T PRK12778 540 SNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV---- 615 (752)
T ss_pred CCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----
Confidence 4456666655421 12468999999999999999999999997 9999987642 44322221
Q ss_pred HHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787 262 QRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (477)
Q Consensus 262 ~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (477)
+.+++.||++++++.+.++..++ +.+. +++... .+++..++++|.||+|+|..|+..++ ..
T Consensus 616 -~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~-~~ 693 (752)
T PRK12778 616 -KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP-SS 693 (752)
T ss_pred -HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc-cc
Confidence 34677899999999999987654 3332 333210 02334579999999999999998642 22
Q ss_pred ccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 325 ~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
..++.++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 694 ~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 694 IPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred ccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999999999999998888999999999999999964
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=3.9e-32 Score=272.99 Aligned_cols=287 Identities=23% Similarity=0.303 Sum_probs=201.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...++|+||||||||++||..|++.|++|+|+|+.+.+||.+.. .+|...+ +
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~--------------------------~ 192 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFKL--------------------------E 192 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCcccC--------------------------C
Confidence 34579999999999999999999999999999999889986432 1221100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~ 197 (477)
. . ......+.+.+.++++..++....+ +... . ....||+||+|||+. +. .+||.+
T Consensus 193 ~-~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~-~--~~~~~d~vvlAtGa~~~~~l~ipG~~-- 250 (471)
T PRK12810 193 K-E-----------VIDRRIELMEAEGIEFRTNVEVGKD-----ITAE-E--LLAEYDAVFLGTGAYKPRDLGIPGRD-- 250 (471)
T ss_pred H-H-----------HHHHHHHHHHhCCcEEEeCCEECCc-----CCHH-H--HHhhCCEEEEecCCCCCCcCCCCCcc--
Confidence 0 0 0111123455678888877644321 1111 1 235799999999998 43 345543
Q ss_pred CceEecchhhhc--------------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCCC-CH----HH
Q 011787 198 EKRIVSSTGALA--------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSM-DG----EI 257 (477)
Q Consensus 198 ~~~~~~~~~~~~--------------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~-~~----~~ 257 (477)
...+++..+++. ....+++++|||+|++|+|+|..+.+.|. +|+++...+...... +. ..
T Consensus 251 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~ 330 (471)
T PRK12810 251 LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYW 330 (471)
T ss_pred CCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCccc
Confidence 344554332211 12357999999999999999999888886 788665444221111 00 00
Q ss_pred -HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec---------CCCceEEEEcCEEEEeecCCCCCCCCCcccc
Q 011787 258 -RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA---------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326 (477)
Q Consensus 258 -~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~---------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~ 326 (477)
.....+.+++.||++++++.++++..+++++. +++... ..++..++++|.||+|+|.+|+...+ ++..
T Consensus 331 ~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~ 409 (471)
T PRK12810 331 PMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQF 409 (471)
T ss_pred chHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-cccc
Confidence 11134556788999999999999976555553 443211 12344689999999999999986533 6778
Q ss_pred ceeecCCCCeecC-CCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 327 GVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 327 gl~~~~~g~i~vd-~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
+++++++|.+.+| ++++|+.|+|||+|||+.++.++..|+.||+.||.+|..
T Consensus 410 gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 410 GVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred CcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 8888888999998 789999999999999998888899999999999999864
No 61
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=256.70 Aligned_cols=295 Identities=28% Similarity=0.433 Sum_probs=223.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
...++|||+|++|..|+.++++.+. +++++-++..+ |..+ + . +.....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------pydr----~----~----Ls~~~~-------- 123 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------PYDR----A----R----LSKFLL-------- 123 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----------cccc----h----h----ccccee--------
Confidence 5689999999999999999999874 67777653211 1100 0 0 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~ 197 (477)
.....+.....++++..+++++.+ .++.+|-..+++.+.+| +.+.|++|+||||+.+. ++||..
T Consensus 124 ---------~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~-- 190 (478)
T KOG1336|consen 124 ---------TVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVE-- 190 (478)
T ss_pred ---------eccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCcc--
Confidence 000112222345788889999887 57789999999999998 89999999999999775 445554
Q ss_pred CceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787 198 EKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 198 ~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv 270 (477)
...+.+..+..+. ......|+++|+|++|+|+|..|...+.+||++++.+.+++ .+.+.+.+.+++.++++||
T Consensus 191 ~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgV 270 (478)
T KOG1336|consen 191 LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGV 270 (478)
T ss_pred ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCe
Confidence 4555554443332 23477899999999999999999999999999999999888 7789999999999999999
Q ss_pred EEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787 271 KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~ 348 (477)
++++++.+.+++...+ .+.+.+. ++.++++|+|++++|.+||+.+ ++. +...+..|+|.||+++||++||
T Consensus 271 k~~~~t~~s~l~~~~~Gev~~V~l~-----dg~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~ 342 (478)
T KOG1336|consen 271 KFYLGTVVSSLEGNSDGEVSEVKLK-----DGKTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPN 342 (478)
T ss_pred EEEEecceeecccCCCCcEEEEEec-----cCCEeccCeEEEeecccccccc--ccc-cceecccCCEeehhceeeccCC
Confidence 9999999999987763 3345554 7789999999999999999997 454 7888999999999999999999
Q ss_pred eEEecccCCCCC----------chhHHHHHHHHHHHHHcCCCCCCCCCCCc
Q 011787 349 VYAIGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVP 389 (477)
Q Consensus 349 vya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p 389 (477)
|||+||++..|. .+..|..+|+.|...+....... +...|
T Consensus 343 VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~-~~~lP 392 (478)
T KOG1336|consen 343 VYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA-YDYLP 392 (478)
T ss_pred cccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc-ccccc
Confidence 999999996542 35567778887666665433222 44455
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.1e-31 Score=278.45 Aligned_cols=279 Identities=23% Similarity=0.319 Sum_probs=201.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+||||||||++||..|++.|++|+|+|+.+.+||++.+ + +|...+ +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~~--------------------------~- 242 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-G-IPRFRL--------------------------P- 242 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-c-CCCCCC--------------------------C-
Confidence 4579999999999999999999999999999999999997532 1 221100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~ 198 (477)
..+ .....+.+.+.++++..++....+ +...+. ...||+||||||+.+. .+|+.+ .
T Consensus 243 ~~~-----------~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~---~~~~DaVilAtGa~~~~~~~ipG~~--~ 301 (652)
T PRK12814 243 ESV-----------IDADIAPLRAMGAEFRFNTVFGRD-----ITLEEL---QKEFDAVLLAVGAQKASKMGIPGEE--L 301 (652)
T ss_pred HHH-----------HHHHHHHHHHcCCEEEeCCcccCc-----cCHHHH---HhhcCEEEEEcCCCCCCCCCCCCcC--c
Confidence 000 011123345568887766532211 222221 2359999999999863 344432 3
Q ss_pred ceEecchhhhc------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCc
Q 011787 199 KRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM 270 (477)
Q Consensus 199 ~~~~~~~~~~~------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv 270 (477)
..+++..++.. ....+++++|||+|.+|+|+|..+.+.|. +|+++++.+. .++..+.++ .+. .+.||
T Consensus 302 ~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV 376 (652)
T PRK12814 302 PGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA-LAEGV 376 (652)
T ss_pred CCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH-HHcCC
Confidence 34555444432 12458999999999999999999999986 6999998775 355444333 333 35699
Q ss_pred EEEeCceEEEEEEcCCeEEEE---Eeec------------CCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCC
Q 011787 271 KFMLKTKVVGVDLSGDGVKLT---LEPA------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335 (477)
Q Consensus 271 ~~~~~~~v~~i~~~~~~~~v~---~~~~------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~ 335 (477)
++++++.+.++..+++++.++ +... .+++...+++|.||+++|..|+..+ ++..|+.++.+|+
T Consensus 377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~~G~ 454 (652)
T PRK12814 377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGT 454 (652)
T ss_pred cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCccccCCCc
Confidence 999999999998766654432 2211 0233457999999999999999886 5677888888899
Q ss_pred eecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 336 IPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 336 i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
+.||+ .++|+.|+|||+||++..+.++..|+.||+.||.+|.
T Consensus 455 I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 455 VKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred EeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 99997 5889999999999999988899999999999999985
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.98 E-value=1.2e-30 Score=280.27 Aligned_cols=282 Identities=23% Similarity=0.286 Sum_probs=199.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+|||||||||+||..|++.|++|+|+|+.+.+||...+ .+|...+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~--gip~~rl~--------------------------- 479 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY--GIPSFRLP--------------------------- 479 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec--cCCccCCC---------------------------
Confidence 4579999999999999999999999999999998889886432 13321100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~~ 198 (477)
.+ +.....+.+.+.++++..+.... ..+++. +- .....||+||||||+. |+ .+||. +.
T Consensus 480 ~e-----------~~~~~~~~l~~~Gv~~~~~~~vg---~~~~~~--~l-~~~~~yDaViIATGa~~pr~l~IpG~--~l 540 (1006)
T PRK12775 480 RD-----------IIDREVQRLVDIGVKIETNKVIG---KTFTVP--QL-MNDKGFDAVFLGVGAGAPTFLGIPGE--FA 540 (1006)
T ss_pred HH-----------HHHHHHHHHHHCCCEEEeCCccC---CccCHH--HH-hhccCCCEEEEecCCCCCCCCCCCCc--CC
Confidence 00 11112234556788888775321 112221 10 0124699999999995 54 34543 34
Q ss_pred ceEecchhhhcc---------------cCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-CCCCCHHHHHHH
Q 011787 199 KRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF 261 (477)
Q Consensus 199 ~~~~~~~~~~~~---------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-~~~~~~~~~~~~ 261 (477)
..+++..+++.. ...+++|+|||||.+|+++|..+.++|.+ |+++.++... ++....+
T Consensus 541 ~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e----- 615 (1006)
T PRK12775 541 GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE----- 615 (1006)
T ss_pred CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----
Confidence 456776654421 12579999999999999999999999984 7888876543 3322111
Q ss_pred HHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCccc
Q 011787 262 QRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGLDK 325 (477)
Q Consensus 262 ~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~ 325 (477)
.+.+++.||++++++.+.++..+ ++.+. +++... .+++..++++|.||+|+|..|+...+ ...
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~ 694 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT-QST 694 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-hcc
Confidence 23467789999999999999754 34433 333210 12233579999999999999998642 223
Q ss_pred cceeecCCCCeecCC-----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 326 IGVETDKMGRIPVNE-----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 326 ~gl~~~~~g~i~vd~-----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
.++.++++|.|.+|+ .++|++|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 467888889999996 6899999999999999999999999999999999986
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.98 E-value=2.5e-30 Score=258.97 Aligned_cols=281 Identities=22% Similarity=0.336 Sum_probs=200.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
...+|+||||||||+++|..|++.|++|+|+|+.+.+||...+ .+|...+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~-------------------------- 191 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDK-------------------------- 191 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCH--------------------------
Confidence 4579999999999999999999999999999999999996432 233221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~ 198 (477)
.+.....+.+++.++++..++... . .+...+ ....||+||+|||+.+. .+|+.+ .
T Consensus 192 ------------~~~~~~~~~~~~~Gv~~~~~~~v~--~---~~~~~~---~~~~~D~vilAtGa~~~~~~~i~g~~--~ 249 (467)
T TIGR01318 192 ------------AVLSRRREIFTAMGIEFHLNCEVG--R---DISLDD---LLEDYDAVFLGVGTYRSMRGGLPGED--A 249 (467)
T ss_pred ------------HHHHHHHHHHHHCCCEEECCCEeC--C---ccCHHH---HHhcCCEEEEEeCCCCCCcCCCCCcC--C
Confidence 011112244566788877664321 1 111111 12479999999999873 455543 3
Q ss_pred ceEecchhhh--------cc---------cCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787 199 KRIVSSTGAL--------AL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (477)
Q Consensus 199 ~~~~~~~~~~--------~~---------~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~ 259 (477)
..+++..++. .+ ...+++++|+|+|.+|+++|..+.+.|. +||++++.+.. ++..+.++
T Consensus 250 ~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-- 327 (467)
T TIGR01318 250 PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-- 327 (467)
T ss_pred CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH--
Confidence 3344432211 01 1246899999999999999999999995 79999987754 55444332
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLG 322 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~ 322 (477)
+.+++.||++++++.++++..++ +.+. +++... .+++..++++|.||+++|++|+...+
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~- 403 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW- 403 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-
Confidence 34567899999999999997643 3332 333210 02345689999999999999986433
Q ss_pred ccccceeecCCCCeecC----CCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 323 LDKIGVETDKMGRIPVN----ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 323 ~~~~gl~~~~~g~i~vd----~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
++..+++++++|++.|| ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|..
T Consensus 404 ~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 404 LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 56678888888999999 678999999999999999888889999999999999864
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.98 E-value=2.2e-30 Score=270.09 Aligned_cols=281 Identities=22% Similarity=0.326 Sum_probs=199.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+||||||||++||..|++.|++|+|+|+.+.+||...+ .+|...+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l~~-------------------------- 377 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKLDK-------------------------- 377 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccCCH--------------------------
Confidence 4679999999999999999999999999999999999997543 233221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~ 198 (477)
. +.....+.+++.++++..+.....+ +...+ ....||+|++|||+... .+|+.. .
T Consensus 378 -~-----------~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~~---~~~~~DavilAtGa~~~~~l~i~g~~--~ 435 (654)
T PRK12769 378 -S-----------LLARRREIFSAMGIEFELNCEVGKD-----ISLES---LLEDYDAVFVGVGTYRSMKAGLPNED--A 435 (654)
T ss_pred -H-----------HHHHHHHHHHHCCeEEECCCEeCCc-----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCC--C
Confidence 0 1111123455668887766432111 11111 12469999999998753 344443 2
Q ss_pred ceEecchhhh--------c---------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787 199 KRIVSSTGAL--------A---------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (477)
Q Consensus 199 ~~~~~~~~~~--------~---------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~ 259 (477)
..+++..+++ . ....+++++|||+|.+|+++|..+.+.|. +|+++++++.. ++..+.+
T Consensus 436 ~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e--- 512 (654)
T PRK12769 436 PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE--- 512 (654)
T ss_pred CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH---
Confidence 3343321110 1 11246899999999999999999999986 69999987654 5544332
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCC
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLG 322 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~------~---------~~~~~~i~~D~vi~a~G~~p~~~~l~ 322 (477)
.+.+++.||++++++.++++..+ ++.+. +++... . .++..++++|.||+|+|+.|+...+
T Consensus 513 --~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~- 589 (654)
T PRK12769 513 --VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW- 589 (654)
T ss_pred --HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-
Confidence 34567889999999999999754 34432 333210 0 2334579999999999999996433
Q ss_pred ccccceeecCCCCeecCC----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 323 ~~~~gl~~~~~g~i~vd~----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
++..+++++++|.|.+|+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 590 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 590 LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 677789999999999986 48999999999999999999999999999999999964
No 66
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=3.7e-30 Score=237.54 Aligned_cols=292 Identities=21% Similarity=0.322 Sum_probs=214.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
...+++|||+|+|.+|+++...|-..-++|++|++++.+ +..+..||... | .+
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF----lFTPLLpS~~v-----------------G------Tv 104 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF----LFTPLLPSTTV-----------------G------TV 104 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccce----EEeeccCCccc-----------------c------ce
Confidence 446789999999999999999999889999999997655 33333333211 0 01
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhh--CCeEEEEeEEEEecCCEEEEEec----C--CceEEEEecEEEEccCCCC--C
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKK--NKVTYVKGYGKFISPSEVSVDTI----E--GGNTVVKGKNIIIATGSDV--K 189 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~v~~~----~--g~~~~i~~d~lvlAtG~~~--~ 189 (477)
..+.+.+. +....++ .++.++...+..+|+....|... + ..+..+.|||||+|+|+.+ +
T Consensus 105 e~rSIvEP-----------Ir~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 105 ELRSIVEP-----------IRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eehhhhhh-----------HHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 11111111 1111111 26788888888899877666532 2 2346799999999999998 4
Q ss_pred CCCCCccCCceEecchhhhcc--------------------cCCCCeeEEEcccHHHHHHHHHHHHc-------------
Q 011787 190 SLPGITIDEKRIVSSTGALAL--------------------NEVPKKLVVIGAGYIGLEMGSVWARL------------- 236 (477)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~~~~--------------------~~~~~~v~IiG~G~~g~e~a~~l~~~------------- 236 (477)
.+||....+..+....++.+. ++.--+++|||||++|+|+|..|+.+
T Consensus 174 gipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~ 253 (491)
T KOG2495|consen 174 GIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELK 253 (491)
T ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcch
Confidence 678876554443333333332 11124799999999999999988654
Q ss_pred -CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 237 -GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 237 -g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
..+||+++..+.+++.||+.+.+..++.+.+.||.+.+++.|+.+. +..+.+... +|+.+++++-+++|++|..
T Consensus 254 ~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~--~~~I~~~~~---~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 254 KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVT--EKTIHAKTK---DGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeec--CcEEEEEcC---CCceeeecceEEEecCCCC
Confidence 3579999999999999999999999999999999999999999984 444444432 5666899999999999988
Q ss_pred CCCCCCCccccceeecCCC--CeecCCCCC-CCCCCeEEecccC---CCCCchhHHHHHHHHHHHHHc
Q 011787 316 PFTAGLGLDKIGVETDKMG--RIPVNERFA-TNIPGVYAIGDVI---PGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 316 p~~~~l~~~~~gl~~~~~g--~i~vd~~l~-t~~~~vya~GD~~---~~~~~~~~A~~~g~~aa~~i~ 377 (477)
|..- ...+.-.+++.| ++.||++|| .+.+||||+|||+ +.+.++..|.+||.++|+++-
T Consensus 329 ~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 329 PRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred Cchh---hhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 8764 233334445555 899999999 7899999999999 345588999999999999884
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=5.1e-29 Score=250.43 Aligned_cols=285 Identities=24% Similarity=0.323 Sum_probs=193.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..++|+|||||+||++||..|++.|++|+|+|+.+.+||.+.+ + +|...+ +-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~-g-ip~~~~--------------------------~~ 193 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY-G-IPNMKL--------------------------DK 193 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec-c-CCCccC--------------------------CH
Confidence 3479999999999999999999999999999998888886532 1 221110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~~ 198 (477)
. +.....+++++.+++++.+.....+ +.. +. ....||+|++|||+. |.. +||.+ .
T Consensus 194 -~-----------~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~-~~--~~~~~d~VilAtGa~~~~~l~i~G~~--~ 251 (485)
T TIGR01317 194 -A-----------IVDRRIDLLSAEGIDFVTNTEIGVD-----ISA-DE--LKEQFDAVVLAGGATKPRDLPIPGRE--L 251 (485)
T ss_pred -H-----------HHHHHHHHHHhCCCEEECCCEeCCc-----cCH-HH--HHhhCCEEEEccCCCCCCcCCCCCcC--C
Confidence 0 0111124456678888777543211 111 11 235799999999998 543 44433 3
Q ss_pred ceEecchhhh----------------cccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCC---------
Q 011787 199 KRIVSSTGAL----------------ALNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPS--------- 252 (477)
Q Consensus 199 ~~~~~~~~~~----------------~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~--------- 252 (477)
..+++..+++ .....+++|+|||+|.+|+|+|..+.+.|. +|+++++.+..+..
T Consensus 252 ~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~ 331 (485)
T TIGR01317 252 KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPE 331 (485)
T ss_pred CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCc
Confidence 4455432221 111357999999999999999888877774 79999887765321
Q ss_pred CCH--HHHHHHHHHHHhcCcEE-EeCceEEEEEEcC-CeEE-EEEee-----cC---------CCceEEEEcCEEEEeec
Q 011787 253 MDG--EIRKQFQRSLEKQKMKF-MLKTKVVGVDLSG-DGVK-LTLEP-----AA---------GGEKTILEADVVLVSAG 313 (477)
Q Consensus 253 ~~~--~~~~~~~~~l~~~gv~~-~~~~~v~~i~~~~-~~~~-v~~~~-----~~---------~~~~~~i~~D~vi~a~G 313 (477)
++. +.....++..+..|+.+ ++++.+.++..++ +.+. +++.. .. .++..++++|.||+++|
T Consensus 332 ~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG 411 (485)
T TIGR01317 332 WPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMG 411 (485)
T ss_pred cchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccC
Confidence 111 12222334444456644 4677788887653 3433 33210 00 23345899999999999
Q ss_pred CC-CCCCCCCccccceeecCCCCee-cCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 314 RT-PFTAGLGLDKIGVETDKMGRIP-VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 314 ~~-p~~~~l~~~~~gl~~~~~g~i~-vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
.. |+..+ ++..|++++++|++. +|++++|+.|+|||+|||+.++.+...|+.+|+.||.+|..
T Consensus 412 ~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 412 FVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 86 88775 567788888888885 46789999999999999998888889999999999999864
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=4.2e-29 Score=259.34 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=199.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
...+|+||||||||+++|..|++.|++|+|+|+.+.+||.+. ++..+ ..+ +.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~-~gip~-~~l--------------------------~~ 360 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT-FGIPP-FKL--------------------------DK 360 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee-ccCCc-ccC--------------------------CH
Confidence 468999999999999999999999999999999999999753 23222 110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~ 198 (477)
.+.....+++...++++..+..... .+...+ ....||+|++|||+.+. .+|+.+ .
T Consensus 361 ------------~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~~---l~~~~DaV~latGa~~~~~~~i~g~~--~ 418 (639)
T PRK12809 361 ------------TVLSQRREIFTAMGIDFHLNCEIGR-----DITFSD---LTSEYDAVFIGVGTYGMMRADLPHED--A 418 (639)
T ss_pred ------------HHHHHHHHHHHHCCeEEEcCCccCC-----cCCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCc--c
Confidence 0011122445667888876643211 111111 23469999999999763 344433 2
Q ss_pred ceEecchhh--------hcc---------cCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787 199 KRIVSSTGA--------LAL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (477)
Q Consensus 199 ~~~~~~~~~--------~~~---------~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~ 259 (477)
..+++..++ ..+ ...+++++|+|+|.+++++|..+.+.|. +||++++++.. ++..+.++.
T Consensus 419 ~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~- 497 (639)
T PRK12809 419 PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV- 497 (639)
T ss_pred CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-
Confidence 334432111 111 1247899999999999999999989985 79999987655 554443332
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLG 322 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~ 322 (477)
.+++.||++++++.++++..++ +.+. +.+... ..++...+++|.||+|+|+.|+...+
T Consensus 498 ----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~- 572 (639)
T PRK12809 498 ----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW- 572 (639)
T ss_pred ----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-
Confidence 2467899999999999997543 4443 332110 02345689999999999999986433
Q ss_pred ccccceeecCCCCeecCC----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787 323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 323 ~~~~gl~~~~~g~i~vd~----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 379 (477)
++..++.++++|.|.+|+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|...
T Consensus 573 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~ 633 (639)
T PRK12809 573 LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTL 633 (639)
T ss_pred ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 667889888889999986 378999999999999998889999999999999999743
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.9e-28 Score=254.33 Aligned_cols=281 Identities=25% Similarity=0.342 Sum_probs=190.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
....+|+|||+|+||+++|..|++.|++|+|+|+.+.+||...+ + +|...+ .
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~-~-i~~~~~--------------------------~ 332 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY-G-IPSYRL--------------------------P 332 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee-c-CCcccC--------------------------C
Confidence 45678999999999999999999999999999998888886432 1 221110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~~ 197 (477)
.+ +.....+.+++.+++++.+.....+ +...+ ....||+||||||+.+ + .+||.+
T Consensus 333 -~~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l~i~G~~-- 390 (604)
T PRK13984 333 -DE-----------ALDKDIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRSTRIPGTD-- 390 (604)
T ss_pred -HH-----------HHHHHHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccCCCCCcC--
Confidence 00 0111123456678888776443211 11111 2357999999999874 2 345533
Q ss_pred CceEecchhhhc-c----------cCCCCeeEEEcccHHHHHHHHHHHHcCC------cEEEEEeC--CCcCCCCCHHHH
Q 011787 198 EKRIVSSTGALA-L----------NEVPKKLVVIGAGYIGLEMGSVWARLGS------EVTVVEFA--ADIVPSMDGEIR 258 (477)
Q Consensus 198 ~~~~~~~~~~~~-~----------~~~~~~v~IiG~G~~g~e~a~~l~~~g~------~Vtli~~~--~~~~~~~~~~~~ 258 (477)
...+++..+... + ...+++++|||||.+|+|+|..+.+++. +|+++... ...++..+.+
T Consensus 391 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e-- 468 (604)
T PRK13984 391 HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE-- 468 (604)
T ss_pred CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHH--
Confidence 344555444332 1 1237899999999999999999998753 67876432 2223322222
Q ss_pred HHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCc
Q 011787 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGL 323 (477)
Q Consensus 259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~ 323 (477)
+.+. .+.||+++++..++++..+++++. +++... .++++.++++|.|++|+|++|++..+..
T Consensus 469 --~~~~-~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~ 545 (604)
T PRK13984 469 --IEEG-LEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE 545 (604)
T ss_pred --HHHH-HHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh
Confidence 2333 457999999998888876555543 333210 0234568999999999999999886421
Q ss_pred c-ccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787 324 D-KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 324 ~-~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 378 (477)
+ ..++.. ++|+|.||+++||++|+|||+||++.++.+ ..|+.+|+.||.+|..
T Consensus 546 ~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 546 ELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGIDM 599 (604)
T ss_pred hhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHHH
Confidence 1 123554 358899999999999999999999988765 6799999999999864
No 70
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.97 E-value=7.8e-28 Score=237.82 Aligned_cols=289 Identities=22% Similarity=0.275 Sum_probs=194.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHH--CCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
...+|+||||||||++||..|++ .|++|+|+|+.+.+||... .+..|.....
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~~------------------------- 78 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVAPDHPET------------------------- 78 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccCCCcchh-------------------------
Confidence 35789999999999999999987 6999999999999999643 3333322110
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCcc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITI 196 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~ 196 (477)
..+...+...+...+++++.+.... ..+..++- ...||+||||||+.+ + .+||.
T Consensus 79 -------------k~v~~~~~~~~~~~~v~~~~nv~vg-----~dvtl~~L---~~~yDaVIlAtGa~~~~~l~IpG~-- 135 (491)
T PLN02852 79 -------------KNVTNQFSRVATDDRVSFFGNVTLG-----RDVSLSEL---RDLYHVVVLAYGAESDRRLGIPGE-- 135 (491)
T ss_pred -------------HHHHHHHHHHHHHCCeEEEcCEEEC-----ccccHHHH---hhhCCEEEEecCCCCCCCCCCCCC--
Confidence 0011112233445677766542221 11222222 347999999999986 3 34553
Q ss_pred CCceEecchhhhcc-------------cCCCCeeEEEcccHHHHHHHHHHHHc--------------------CC-cEEE
Q 011787 197 DEKRIVSSTGALAL-------------NEVPKKLVVIGAGYIGLEMGSVWARL--------------------GS-EVTV 242 (477)
Q Consensus 197 ~~~~~~~~~~~~~~-------------~~~~~~v~IiG~G~~g~e~a~~l~~~--------------------g~-~Vtl 242 (477)
+...+++..++..+ ...+++++|||+|++|+++|..|.+. +. +|++
T Consensus 136 d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~i 215 (491)
T PLN02852 136 DLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYL 215 (491)
T ss_pred CCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEE
Confidence 34567776665321 12478999999999999999998775 54 6999
Q ss_pred EEeCCCc-CCCCCHHHHH-------------------------------------HHHHHHHh---------cCcEEEeC
Q 011787 243 VEFAADI-VPSMDGEIRK-------------------------------------QFQRSLEK---------QKMKFMLK 275 (477)
Q Consensus 243 i~~~~~~-~~~~~~~~~~-------------------------------------~~~~~l~~---------~gv~~~~~ 275 (477)
+.|+... .+...+++.+ .+.+...+ +++.|++.
T Consensus 216 v~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~ 295 (491)
T PLN02852 216 VGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFF 295 (491)
T ss_pred EEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEcc
Confidence 9998853 1111222211 11222112 57999999
Q ss_pred ceEEEEEEc--C-CeEE-EEEeec--------------CCCceEEEEcCEEEEeecCC--CCCCCCCccccceeecCCCC
Q 011787 276 TKVVGVDLS--G-DGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRT--PFTAGLGLDKIGVETDKMGR 335 (477)
Q Consensus 276 ~~v~~i~~~--~-~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~--p~~~~l~~~~~gl~~~~~g~ 335 (477)
....+|..+ + +++. +++... .+++.+.++||.||.++|++ |+.........++..+.+|+
T Consensus 296 ~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~ 375 (491)
T PLN02852 296 RNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGR 375 (491)
T ss_pred CCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCce
Confidence 999999742 1 3332 444310 13455679999999999998 55442112344677788899
Q ss_pred eecCCCCCCCCCCeEEecccCCCCC-chhHHHHHHHHHHHHHcCC
Q 011787 336 IPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 336 i~vd~~l~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~~ 379 (477)
|.+|+.++|++|+|||+|||..+|. +...++.+|+.++++|+..
T Consensus 376 V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 376 VLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAED 420 (491)
T ss_pred EEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHH
Confidence 9999888999999999999998876 7788999999999999743
No 71
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=225.82 Aligned_cols=290 Identities=29% Similarity=0.399 Sum_probs=212.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (477)
..|||+||||||||-+||.+.+|.|.+.-++- +++||+.+..-.+... .+++ ...-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENf------------------Isv~----~teG 265 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENF------------------ISVP----ETEG 265 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhhe------------------eccc----cccc
Confidence 35999999999999999999999999877773 5688875433211100 0000 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec-----CCEEEEEecCCceEEEEecEEEEccCCCCC--CCCC
Q 011787 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS-----PSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-----~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g 193 (477)
++ +...++...+++.|++++. ++..+. .+-+.|.+++| -.+.++.+|||||++.+ .+||
T Consensus 266 pk-----------l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 266 PK-----------LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred hH-----------HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCc
Confidence 11 2223344455566666554 222222 34578888888 78999999999999986 4677
Q ss_pred Cc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcE
Q 011787 194 IT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMK 271 (477)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~ 271 (477)
.. ...+.+..+..+..-...+|+|+|||||.+|+|.|-.|+-.-..||+++-.+.+- .-+.+++.|+. .+++
T Consensus 333 E~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ 406 (520)
T COG3634 333 EDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVT 406 (520)
T ss_pred hHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHHHHHHhcCCCcE
Confidence 54 3445565555555555569999999999999999999988878999997544321 12335555554 4899
Q ss_pred EEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy 350 (477)
++++..-+++.++++++. +.+.+..+++...++-+-|++-+|..||+++ ++.. ++++++|-|.||....||+|+||
T Consensus 407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~~g~TsvpGvF 483 (520)
T COG3634 407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVF 483 (520)
T ss_pred EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEecCCCcCCCcee
Confidence 999999999998877665 7777777777788999999999999999998 5665 89999999999999999999999
Q ss_pred EecccCCCC-CchhHHHHHHHHHHHHHc
Q 011787 351 AIGDVIPGP-MLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 351 a~GD~~~~~-~~~~~A~~~g~~aa~~i~ 377 (477)
|+|||+..| .....|+-+|..|+-..+
T Consensus 484 AAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 484 AAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCcccCCccceEEEEecCcchhhhhhh
Confidence 999999655 355667777666655443
No 72
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=230.98 Aligned_cols=370 Identities=27% Similarity=0.294 Sum_probs=256.4
Q ss_pred EEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 46 VVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 46 vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
++|||+|+||+++|..|++. +.+++++.+...... ..|.-+..+.. +. .....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~---------------~~------~~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY----YRCPLSLYVGG---------------GI------ASLED 55 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC----CCCccchHHhc---------------cc------CCHHH
Confidence 58999999999999999886 567887777543211 11100000000 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~ 202 (477)
+. .... +..+.++++..+ .+..+|.....+.+.+| ++.||++++|||++|..+|+.. ...++
T Consensus 56 ~~-----------~~~~-~~~~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~--~~~~~ 118 (415)
T COG0446 56 LR-----------YPPR-FNRATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISD--WEGVV 118 (415)
T ss_pred hc-----------ccch-hHHhhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCCccc--cCceE
Confidence 00 0000 113457777765 57889998888888887 8899999999999997766222 22233
Q ss_pred cc---hhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-HHHHHHHHHHHHhcCcEEEeC
Q 011787 203 SS---TGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQRSLEKQKMKFMLK 275 (477)
Q Consensus 203 ~~---~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~ 275 (477)
+. .+..... ...++++|+|+|++|+++|..+++.|.+|++++..+++++.+- +++.+.+.+.++++||+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 198 (415)
T COG0446 119 TLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLG 198 (415)
T ss_pred EECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeC
Confidence 32 2222221 1258999999999999999999999999999999999988776 899999999999999999999
Q ss_pred ceEEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc-eeecCCCCeecCCCCCCC-CCCeE
Q 011787 276 TKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VETDKMGRIPVNERFATN-IPGVY 350 (477)
Q Consensus 276 ~~v~~i~~~~~~~~---v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~~~~~g~i~vd~~l~t~-~~~vy 350 (477)
..+.+++...+... +... ++..+++|.+++++|.+||... .++.+ .....+|++.||++++|+ .++||
T Consensus 199 ~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~ 271 (415)
T COG0446 199 TKVVGVEGKGNTLVVERVVGI-----DGEEIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVY 271 (415)
T ss_pred CceEEEEcccCcceeeEEEEe-----CCcEEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEE
Confidence 99999987765543 2332 6678999999999999999764 34443 145567899999999997 99999
Q ss_pred EecccCCCC----------CchhHHHHHHHHHHHHHcCCCCCCCCCCCce--EEEcCCCeeeecCCHHHHHHcCCCEEEE
Q 011787 351 AIGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG--VVYTHPEVASVGKTEEQVKELGVEYRVG 418 (477)
Q Consensus 351 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 418 (477)
|+|||+..+ ..+..|..++++++.++.+. .++ ....+. .-.........|+++. ....++ ...
T Consensus 272 a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~ 346 (415)
T COG0446 272 AAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVL 346 (415)
T ss_pred eccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-ccc-ccccCceEEEEcCeEEEEecCCcc--ccccee-eeE
Confidence 999998432 25778999999999999876 222 222333 2334556788899987 444444 233
Q ss_pred EEecCccccchhcC-CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787 419 KFPFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH 471 (477)
Q Consensus 419 ~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~ 471 (477)
.+......+..... ......|+.++.++++++|+++ -. ....++.++.++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 398 (415)
T COG0446 347 VVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIG 398 (415)
T ss_pred EEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhh
Confidence 22333332333333 2345788999989999999999 33 5666666666655
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=2.3e-26 Score=248.93 Aligned_cols=281 Identities=20% Similarity=0.225 Sum_probs=187.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
...+||+||||||||++||..|++.|++|+|+|+++.+||++..... ++ +.
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~---------------------g~------- 212 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID---------------------GK------- 212 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC---------------------Cc-------
Confidence 34689999999999999999999999999999999899997643210 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEe-EEEEecCCE-E-EEEe------------cCCceEEEEecEEEEc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKG-YGKFISPSE-V-SVDT------------IEGGNTVVKGKNIIIA 183 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~-~-~v~~------------~~g~~~~i~~d~lvlA 183 (477)
+..+ +.......+... +++++.+ ++..+.... + .+.. .......+.||+||||
T Consensus 213 ~~~~-----------~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILA 281 (985)
T TIGR01372 213 PAAD-----------WAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLA 281 (985)
T ss_pred cHHH-----------HHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEc
Confidence 0000 001111222223 4776654 333333221 1 0100 0011236899999999
Q ss_pred cCCCCCCCCCCccCCceEecchhhhcc----c-CCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCCCCHHH
Q 011787 184 TGSDVKSLPGITIDEKRIVSSTGALAL----N-EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSMDGEI 257 (477)
Q Consensus 184 tG~~~~~~~g~~~~~~~~~~~~~~~~~----~-~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~~ 257 (477)
||+.++.+|..+.+...+++......+ . ..+++++|||+|++++|+|..|++.|. .|+++++.+.+
T Consensus 282 TGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------- 353 (985)
T TIGR01372 282 TGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------- 353 (985)
T ss_pred CCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence 999986544322334455555433322 1 247899999999999999999999995 57788766533
Q ss_pred HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccce--eecCC--
Q 011787 258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV--ETDKM-- 333 (477)
Q Consensus 258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~-- 333 (477)
...+.+.+++.||++++++.++++..++....+++.. .++++++++||.|+++.|++||+++ +..++. ..++.
T Consensus 354 ~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~ 430 (985)
T TIGR01372 354 SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIA 430 (985)
T ss_pred hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccC
Confidence 2345677889999999999999997655433455542 1345678999999999999999986 444443 33322
Q ss_pred CCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 334 g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
+++. .|++|+||++||+++.. ....|..+|+.||..++
T Consensus 431 ~~~~-----~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 431 AFLP-----GDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred ceec-----CCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 1211 37899999999998655 45669999999998885
No 74
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=199.81 Aligned_cols=287 Identities=26% Similarity=0.286 Sum_probs=199.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC----CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG----ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~----~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
+.+|+|||+|||+.+||+++++..++-+|+|-.- ..||+....--+. .++ |++ + -
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~ve----------------NfP--GFP-d--g 66 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVE----------------NFP--GFP-D--G 66 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccc----------------cCC--CCC-c--c
Confidence 3589999999999999999999999999999621 3456543321110 010 111 0 0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCE--EEEEecCCceEEEEecEEEEccCCCCC--CCCCC
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE--VSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGI 194 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~ 194 (477)
+.-++ +.+.+.....+.+.+++..++..+|... +.+.++. +.+.+|.+|+|||+..+ .+|+.
T Consensus 67 i~G~~-----------l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~---~~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 67 ITGPE-----------LMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDA---RPVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred cccHH-----------HHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecC---CceeeeeEEEecccceeeeecCCC
Confidence 11111 2233344556678999999887776544 4444433 57899999999998875 45654
Q ss_pred cc---CCceEecchhhh--cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHH-HHHHHhc
Q 011787 195 TI---DEKRIVSSTGAL--ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF-QRSLEKQ 268 (477)
Q Consensus 195 ~~---~~~~~~~~~~~~--~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~-~~~l~~~ 268 (477)
+. ..+.+-.+.-+. .-....|..+|||||.+++|-|..|.+.+.+|++++|++.+.. +..+ ++.++..
T Consensus 133 ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~np 206 (322)
T KOG0404|consen 133 GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNP 206 (322)
T ss_pred CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHhcCC
Confidence 31 111121111111 1123478899999999999999999999999999999997642 2223 3445666
Q ss_pred CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCC-CCCCCC
Q 011787 269 KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-RFATNI 346 (477)
Q Consensus 269 gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~ 346 (477)
+|++++++.+.+...+.+.+. +.+.+..+++...++.+-+++++|..|++.+ ++. .+++|.+|+|.+-+ .-.||+
T Consensus 207 nI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~Tsv 283 (322)
T KOG0404|consen 207 NIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSLTSV 283 (322)
T ss_pred CeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhH--hcC-ceeeccCceEEeccCcccccc
Confidence 899999998888876644433 6677777888889999999999999999997 444 69999999999885 456999
Q ss_pred CCeEEecccCCC-CCchhHHHHHHHHHH
Q 011787 347 PGVYAIGDVIPG-PMLAHKAEEDGVACV 373 (477)
Q Consensus 347 ~~vya~GD~~~~-~~~~~~A~~~g~~aa 373 (477)
|++||+||+... +..+..|...|-++|
T Consensus 284 pG~FAAGDVqD~kyRQAvTaAgsGciaa 311 (322)
T KOG0404|consen 284 PGVFAAGDVQDKKYRQAVTAAGSGCIAA 311 (322)
T ss_pred cceeeccccchHHHHHHHhhhccchhhh
Confidence 999999999843 334444444444443
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=1.4e-26 Score=238.07 Aligned_cols=279 Identities=27% Similarity=0.373 Sum_probs=192.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
....+|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+ + +|...+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~-g-ip~~~~~-------------------------- 186 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY-G-IPAYRLP-------------------------- 186 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-c-CCCccCC--------------------------
Confidence 34679999999999999999999999999999999999996432 1 2321110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~ 197 (477)
.+ +.....+.+.+.++++..+.....+ +.... ....||+|++|||+... .+++..
T Consensus 187 -~~-----------~~~~~l~~~~~~Gv~~~~~~~~~~~-----~~~~~---~~~~~D~Vi~AtG~~~~~~~~i~g~~-- 244 (564)
T PRK12771 187 -RE-----------VLDAEIQRILDLGVEVRLGVRVGED-----ITLEQ---LEGEFDAVFVAIGAQLGKRLPIPGED-- 244 (564)
T ss_pred -HH-----------HHHHHHHHHHHCCCEEEeCCEECCc-----CCHHH---HHhhCCEEEEeeCCCCCCcCCCCCCc--
Confidence 00 0001112344567777655332111 00000 12358999999998753 334422
Q ss_pred CceEecchhhhc------ccCCCCeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcC
Q 011787 198 EKRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQK 269 (477)
Q Consensus 198 ~~~~~~~~~~~~------~~~~~~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~g 269 (477)
...++...++.. ....+++++|+|+|.++++++..+.+++ .+|+++.+.+.. ++..+.++ . ...+.|
T Consensus 245 ~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~----~-~a~~~G 319 (564)
T PRK12771 245 AAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI----E-EALREG 319 (564)
T ss_pred cCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH----H-HHHHcC
Confidence 222333222221 1234799999999999999999898888 679999887643 44333332 2 235679
Q ss_pred cEEEeCceEEEEEEcCCeE-EEEE---eec---C-------CCceEEEEcCEEEEeecCCCCCCCCCccc-cceeecCCC
Q 011787 270 MKFMLKTKVVGVDLSGDGV-KLTL---EPA---A-------GGEKTILEADVVLVSAGRTPFTAGLGLDK-IGVETDKMG 334 (477)
Q Consensus 270 v~~~~~~~v~~i~~~~~~~-~v~~---~~~---~-------~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~~~~g 334 (477)
|+++++..+.++..++++. .+++ ... . .++..++++|.||+|+|..|+..+ +++ .++. +++|
T Consensus 320 Vki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~--~~~~~gl~-~~~G 396 (564)
T PRK12771 320 VEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAG--LESVPGVE-VGRG 396 (564)
T ss_pred CEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhh--hhhccCcc-cCCC
Confidence 9999999999997665432 2221 110 0 344568999999999999998876 343 5677 7789
Q ss_pred CeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 335 RIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 335 ~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
+|.||+ .++|+.|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 397 ~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 397 VVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 999998 6889999999999999889999999999999999985
No 76
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-27 Score=217.03 Aligned_cols=315 Identities=20% Similarity=0.195 Sum_probs=220.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccC-chhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIP-SKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
.+...+|||+|.+..+++...+.. +.+|.+|..++.+- +..+| |+.+|.....-......+..+.=....+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP-----YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsif 251 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP-----YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIF 251 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-----ccCCCcchhceecCCCChhhheeecccCCccceeE
Confidence 356789999999988887776655 67899987654431 11111 33333211110000000111100001111
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccC
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID 197 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~ 197 (477)
+..+.++-...+ ......-||.+++| ++..+|.+...|.++|| .+|.||.++||||.+|...+-++..
T Consensus 252 fepd~FfvspeD---------Lp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 252 FEPDGFFVSPED---------LPKAVNGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred ecCCcceeChhH---------CcccccCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhc
Confidence 111111100000 01122347889988 57889999999999999 8999999999999999766544321
Q ss_pred -------CceEecchhhhcccCC---CCeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcC-CCCCHHHHHHHH
Q 011787 198 -------EKRIVSSTGALALNEV---PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV-PSMDGEIRKQFQ 262 (477)
Q Consensus 198 -------~~~~~~~~~~~~~~~~---~~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~-~~~~~~~~~~~~ 262 (477)
-..+.+..|+.++++. .++|.|||+|+.|.|+|..|.+. |.+|+-+......+ ..+++.++++-.
T Consensus 321 ~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ 400 (659)
T KOG1346|consen 321 SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTI 400 (659)
T ss_pred CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHH
Confidence 1245567777766543 58999999999999999998754 66787554443333 356778899999
Q ss_pred HHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCC-CCeecCCC
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM-GRIPVNER 341 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~-g~i~vd~~ 341 (477)
+.+++.||.++.+..|.++..+.+.+.+.+. +|.++..|+|++|+|-.||++. .+..|+++|++ |++.||..
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~-----dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnae 473 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLS-----DGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAE 473 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEec-----CCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeehe
Confidence 9999999999999999999888888888887 7889999999999999999997 77888999876 88999999
Q ss_pred CCCCCCCeEEecccCCCC---------CchhHHHHHHHHHHHHHcCCC
Q 011787 342 FATNIPGVYAIGDVIPGP---------MLAHKAEEDGVACVEFLAGKH 380 (477)
Q Consensus 342 l~t~~~~vya~GD~~~~~---------~~~~~A~~~g~~aa~~i~~~~ 380 (477)
|+.. .|||++||++... ..+..|.-.||.|++||.+-.
T Consensus 474 L~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 474 LKAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred eecc-cceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence 9864 7999999998321 245678889999999998754
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.94 E-value=6.2e-25 Score=218.29 Aligned_cols=313 Identities=17% Similarity=0.207 Sum_probs=186.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCc--------hhhhhhhHHHHHHHhhhhhCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS--------KALLHSSHMYHEAMHSFASHG 111 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~--------~~l~~~~~~~~~~~~~~~~~g 111 (477)
+...++|+|||||+|||+||.+|++.|++|+++|+++.+||+|.+....+. ....+ ...|..+.......-
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~-s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH-SSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccc-hhhhhhhhccCCHhh
Confidence 344689999999999999999999999999999999999999987643321 11101 112222221111111
Q ss_pred ccccccccC--------hHHHHHHHHHHHHHHHHHHHHHhhhCCeE--EE-EeEEEEecC--CEEEEEecCC--ceEEEE
Q 011787 112 VKFSSVEVD--------LPAMMAQKDKAVSNLTRGIEGLFKKNKVT--YV-KGYGKFISP--SEVSVDTIEG--GNTVVK 176 (477)
Q Consensus 112 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~~~--~~~~v~~~~g--~~~~i~ 176 (477)
+.+.+.++. ....++. ...+.+++..+.+..++. +. ..++..++. +.+.|.+.++ ...+..
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~----~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~ 161 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPS----HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI 161 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCC----HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence 111111000 0000111 122344445555566665 33 234555543 4577766533 223578
Q ss_pred ecEEEEccC--CCCC--CCCCCc-cCCceEecchhhhc-ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787 177 GKNIIIATG--SDVK--SLPGIT-IDEKRIVSSTGALA-LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (477)
Q Consensus 177 ~d~lvlAtG--~~~~--~~~g~~-~~~~~~~~~~~~~~-~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 250 (477)
||+||+||| +.|. .+||.. ..+..+++ .+... ....+|+|+|||+|.+|+|+|..|+..+.+|++++|.+...
T Consensus 162 ~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs-~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~ 240 (461)
T PLN02172 162 FDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHS-HNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD 240 (461)
T ss_pred cCEEEEeccCCCCCcCCCCCCcccCCceEEEe-cccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc
Confidence 999999999 5663 456654 23333333 33222 22358999999999999999999999999999999876432
Q ss_pred CCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc-ee
Q 011787 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VE 329 (477)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~ 329 (477)
. ...+......+..+..|..+.. ++. +++. +|+.+++|.||+|||++|+.+++ +..+ +.
T Consensus 241 ~----------~~~~~~~~~~v~~~~~I~~~~~-~g~--V~f~-----DG~~~~~D~Ii~~TGy~~~~pfL--~~~~~i~ 300 (461)
T PLN02172 241 T----------YEKLPVPQNNLWMHSEIDTAHE-DGS--IVFK-----NGKVVYADTIVHCTGYKYHFPFL--ETNGYMR 300 (461)
T ss_pred c----------cccCcCCCCceEECCcccceec-CCe--EEEC-----CCCCccCCEEEECCcCCcccccc--Cccccee
Confidence 1 0011112234455666666543 233 4444 56678999999999999999874 3322 22
Q ss_pred ecCCCCeecCCC-CCCC-CCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787 330 TDKMGRIPVNER-FATN-IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 330 ~~~~g~i~vd~~-l~t~-~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 379 (477)
.+++.....=.+ +-.. .|+++.+|=... ......+..|++++|+-+.|+
T Consensus 301 v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~-~~~f~~~E~Qa~~~a~v~sG~ 351 (461)
T PLN02172 301 IDENRVEPLYKHVFPPALAPGLSFIGLPAM-GIQFVMFEIQSKWVAAVLSGR 351 (461)
T ss_pred eCCCcchhhHHhhcCCCCCCcEEEEecccc-ccCchhHHHHHHHHHHHHcCC
Confidence 322110001111 1123 489999996532 234567889999999999876
No 78
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.90 E-value=1e-22 Score=204.88 Aligned_cols=313 Identities=18% Similarity=0.211 Sum_probs=151.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCcc-C--chhhhhhhHHHHHHHhhhhhCCcccccc-cc
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCI-P--SKALLHSSHMYHEAMHSFASHGVKFSSV-EV 119 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~-p--~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~ 119 (477)
++|+|||||++||++|..|.+.|++++++|+++.+||.|.+.... + +..+.+.........-.+.++.++.+.. ..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 589999999999999999999999999999999999999754311 0 0000000000000000112222221111 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeE--E-EEeE---EEEecC----CEEEEEec-CCceEEEEecEEEEccCCC-
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVT--Y-VKGY---GKFISP----SEVSVDTI-EGGNTVVKGKNIIIATGSD- 187 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~---~~~~~~----~~~~v~~~-~g~~~~i~~d~lvlAtG~~- 187 (477)
...++.++. +.+.+..++. + +..+ +...++ ..+.|.+. +|+..+-.||+||+|||..
T Consensus 82 ~~~~v~~Yl-----------~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 82 SHSEVLEYL-----------ESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp BHHHHHHHH-----------HHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred CHHHHHHHH-----------HHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 222222222 2222222221 1 1112 222222 35777664 4444567899999999964
Q ss_pred -CC----CCCCCccCCceEecchhhhccc-CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCC------
Q 011787 188 -VK----SLPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMD------ 254 (477)
Q Consensus 188 -~~----~~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~------ 254 (477)
|. .+||++.....++++.+..... ..+|+|+|||+|.+|+++|..+++...+|++..|++.+ +|...
T Consensus 151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp CESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred CCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 32 2566653334556655554433 45899999999999999999999999999998887754 33211
Q ss_pred -----------------HHHHHHH-HHHHHh------cCcEEE------------------------eCceEEEEEEcCC
Q 011787 255 -----------------GEIRKQF-QRSLEK------QKMKFM------------------------LKTKVVGVDLSGD 286 (477)
Q Consensus 255 -----------------~~~~~~~-~~~l~~------~gv~~~------------------------~~~~v~~i~~~~~ 286 (477)
..+...+ .+.+.+ .|..-. ....|.++ .++
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~--~~~ 308 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRF--TEN 308 (531)
T ss_dssp --------------------------------------------------------------------EE-EEEE---SS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence 0001111 000100 011000 00011111 111
Q ss_pred eEEEEEeecCCCceEE-EEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC---CCCCCCeEEecccCCCCCch
Q 011787 287 GVKLTLEPAAGGEKTI-LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF---ATNIPGVYAIGDVIPGPMLA 362 (477)
Q Consensus 287 ~~~v~~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l---~t~~~~vya~GD~~~~~~~~ 362 (477)
.+.+ .+|++ .++|.||+|||+....+++. +.-+...+ +.+..-.++ .-..|++..+|=+.......
T Consensus 309 --~v~F-----~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~f 378 (531)
T PF00743_consen 309 --SVIF-----EDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIF 378 (531)
T ss_dssp --EEEE-----TTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SBSSS-HH
T ss_pred --cccc-----cccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccccccccccccc
Confidence 1222 25565 47999999999999888753 32222222 222222221 12458999999875433356
Q ss_pred hHHHHHHHHHHHHHcCC
Q 011787 363 HKAEEDGVACVEFLAGK 379 (477)
Q Consensus 363 ~~A~~~g~~aa~~i~~~ 379 (477)
..+..|++++|+-+.|.
T Consensus 379 p~~ElQArw~a~v~sG~ 395 (531)
T PF00743_consen 379 PIFELQARWAARVFSGR 395 (531)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccc
Confidence 67899999999999875
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=2.3e-22 Score=196.98 Aligned_cols=287 Identities=24% Similarity=0.278 Sum_probs=200.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
.+..+|.||||||||++||..|.+.|++|+++|+.+..||...+- +|...+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG--IP~~kl~-------------------------- 172 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG--IPDFKLP-------------------------- 172 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec--Cchhhcc--------------------------
Confidence 345899999999999999999999999999999999999964432 4432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITID 197 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~ 197 (477)
..+.+...+.+++.+++|..+.....+ +..++ ..-.||++++|||+.-+ .+|+.+
T Consensus 173 ------------k~i~d~~i~~l~~~Gv~~~~~~~vG~~-----it~~~---L~~e~Dav~l~~G~~~~~~l~i~g~d-- 230 (457)
T COG0493 173 ------------KDILDRRLELLERSGVEFKLNVRVGRD-----ITLEE---LLKEYDAVFLATGAGKPRPLDIPGED-- 230 (457)
T ss_pred ------------chHHHHHHHHHHHcCeEEEEcceECCc-----CCHHH---HHHhhCEEEEeccccCCCCCCCCCcC--
Confidence 012222335667778888877543321 11111 22356999999998654 344433
Q ss_pred CceEecchhhhcc------c-----C----CCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc--CCCCCHHHHH
Q 011787 198 EKRIVSSTGALAL------N-----E----VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI--VPSMDGEIRK 259 (477)
Q Consensus 198 ~~~~~~~~~~~~~------~-----~----~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~--~~~~~~~~~~ 259 (477)
...++...+++.. . . .+++++|||+|.++++++....++|. +|+.+.+...- ...++.-...
T Consensus 231 ~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~ 310 (457)
T COG0493 231 AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQ 310 (457)
T ss_pred CCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchh
Confidence 4455555444321 1 1 13999999999999999999999998 67777522211 1122222244
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEe---ecC-------------CCceEEEEcCEEEEeecCCCCCCCC
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLE---PAA-------------GGEKTILEADVVLVSAGRTPFTAGL 321 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~---~~~-------------~~~~~~i~~D~vi~a~G~~p~~~~l 321 (477)
...+...++|+.+.+.....++..++ +++. +.+. ... .++...+++|.|+.++|+.++....
T Consensus 311 ~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~ 390 (457)
T COG0493 311 LEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDG 390 (457)
T ss_pred hhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccc
Confidence 45566777899999888888887744 4443 2221 110 2455789999999999999886553
Q ss_pred CccccceeecCCCCeecCCCC-CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 322 GLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 322 ~~~~~gl~~~~~g~i~vd~~l-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
.....++..+..|.+.+|+.+ +|+.|++||.||+..+..+...|+.+|+.+|+.|.
T Consensus 391 ~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 391 LLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 233336778888999999998 89999999999999988899999999999999875
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.85 E-value=2.4e-19 Score=185.96 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=166.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhh--hCCcccccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFA--SHGVKFSSV 117 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~--~~g~~~~~~ 117 (477)
.+.++|+||||||||++||.+|++.|++|+++|+....|+..... +++ .....+.... .... ..|+.....
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~-----~~i-~~~~~~~~~L~er~p~~~GG~~~yGI 454 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVH-----KPI-KFWHEYKNLLSERMPRGFGGVAEYGI 454 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccc-----ccc-chhhhhccchhhhccccCCcccccCc
Confidence 456899999999999999999999999999999865554421100 000 0001111111 1111 012221111
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhh-hCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCCCCCCc
Q 011787 118 EVDLPAMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGIT 195 (477)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~~~g~~ 195 (477)
.+.|.+ ..+ +.....+. ..++.++.+.....+ +..++ .....||+|+||||+ .|+.++..+
T Consensus 455 p~R~~k------~~l----~~i~~il~~g~~v~~~~gv~lG~d-----it~ed--l~~~gyDAV~IATGA~kpr~L~IPG 517 (1028)
T PRK06567 455 TVRWDK------NNL----DILRLILERNNNFKYYDGVALDFN-----ITKEQ--AFDLGFDHIAFCIGAGQPKVLDIEN 517 (1028)
T ss_pred cccchH------HHH----HHHHHHHhcCCceEEECCeEECcc-----CCHHH--HhhcCCCEEEEeCCCCCCCCCCCCC
Confidence 222221 111 11112222 224555545331111 11111 124579999999999 465433222
Q ss_pred cCCceEecchhhhccc--------------CCCCeeEEEcccHHHHHHHHHHHH--------------------------
Q 011787 196 IDEKRIVSSTGALALN--------------EVPKKLVVIGAGYIGLEMGSVWAR-------------------------- 235 (477)
Q Consensus 196 ~~~~~~~~~~~~~~~~--------------~~~~~v~IiG~G~~g~e~a~~l~~-------------------------- 235 (477)
.+...+++..+++... ..+++|+|||||.+|+|+|.....
T Consensus 518 eda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia 597 (1028)
T PRK06567 518 FEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIA 597 (1028)
T ss_pred ccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHH
Confidence 3456788777754321 135799999999999999983322
Q ss_pred -------------------------cCCcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeE
Q 011787 236 -------------------------LGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGV 288 (477)
Q Consensus 236 -------------------------~g~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~ 288 (477)
.| .|++++|+..- +|...- ..+++.+. .+.||.|+++....++..++ +.+
T Consensus 598 ~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~-~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v 674 (1028)
T PRK06567 598 EEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKL-NHEELIYA-LALGVDFKENMQPLRINVDKYGHV 674 (1028)
T ss_pred HHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCC-CHHHHHHH-HHcCcEEEecCCcEEEEecCCCeE
Confidence 22 28888887754 443210 11233444 45699999999999997653 443
Q ss_pred E-EEEeecC-----------C-C-------------ceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC
Q 011787 289 K-LTLEPAA-----------G-G-------------EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342 (477)
Q Consensus 289 ~-v~~~~~~-----------~-~-------------~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l 342 (477)
. +++.... . + ...+++||.||+|+|..||+..+ .. +..+
T Consensus 675 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~------~~s~ 739 (1028)
T PRK06567 675 ESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED------KYSY 739 (1028)
T ss_pred EEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc------cccc
Confidence 3 4333111 1 1 34689999999999999999852 00 1112
Q ss_pred CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 343 ~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
-++.+++|+- ....|+.+|+.++.+|.
T Consensus 740 ~~d~~~~f~G--------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 740 FGDCNPKYSG--------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ccCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence 2445666654 56789999999999994
No 81
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.1e-19 Score=183.90 Aligned_cols=281 Identities=22% Similarity=0.306 Sum_probs=179.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
.+.++|.|||+|||||+||-+|.+.|+.|+++||.+++||...+ .+|.. .
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y--gipnm----------------------------k 1832 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY--GIPNM----------------------------K 1832 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee--cCCcc----------------------------c
Confidence 35689999999999999999999999999999999999995332 13321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-CCCCCCccCCc
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-KSLPGITIDEK 199 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~~~~g~~~~~~ 199 (477)
+.++ ..+.-.+++.+.|++|+.++...- .+... + ..-.+|.+|+|+|+.. +.+|..+.+..
T Consensus 1833 ldk~----------vv~rrv~ll~~egi~f~tn~eigk-----~vs~d-~--l~~~~daiv~a~gst~prdlpv~grd~k 1894 (2142)
T KOG0399|consen 1833 LDKF----------VVQRRVDLLEQEGIRFVTNTEIGK-----HVSLD-E--LKKENDAIVLATGSTTPRDLPVPGRDLK 1894 (2142)
T ss_pred hhHH----------HHHHHHHHHHhhCceEEeeccccc-----cccHH-H--HhhccCeEEEEeCCCCCcCCCCCCcccc
Confidence 1111 112223566678999887653221 13221 1 3346899999999864 55554434444
Q ss_pred eEecchhhh---------------cccCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCC---------cCCCCC
Q 011787 200 RIVSSTGAL---------------ALNEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAAD---------IVPSMD 254 (477)
Q Consensus 200 ~~~~~~~~~---------------~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------~~~~~~ 254 (477)
.++-..+++ .+...+|+|+|||||.+|-++...-.++|.+ |.-++--+. ++|.++
T Consensus 1895 gv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwp 1974 (2142)
T KOG0399|consen 1895 GVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWP 1974 (2142)
T ss_pred ccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCc
Confidence 444333332 1233489999999999999998888888864 433332222 233332
Q ss_pred HH-----HHHHHHHHHHhcCcEEEeC------------ceEEE-----E--EEcCCe-EE-EEEeecCCCceEEEEcCEE
Q 011787 255 GE-----IRKQFQRSLEKQKMKFMLK------------TKVVG-----V--DLSGDG-VK-LTLEPAAGGEKTILEADVV 308 (477)
Q Consensus 255 ~~-----~~~~~~~~l~~~gv~~~~~------------~~v~~-----i--~~~~~~-~~-v~~~~~~~~~~~~i~~D~v 308 (477)
.- -.+++++. .|-+..+- ..|+. + +.++.+ .. .++ .++.+.++||+|
T Consensus 1975 rvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei----~~see~~eadlv 2047 (2142)
T KOG0399|consen 1975 RVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEI----NNSEEIIEADLV 2047 (2142)
T ss_pred eEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEc----CCcceeeeccee
Confidence 10 01111211 12211111 11111 1 112211 11 111 235678999999
Q ss_pred EEeecCCCCCCCCCccccceeecCCCCeec-CCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787 309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPV-NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (477)
Q Consensus 309 i~a~G~~p~~~~l~~~~~gl~~~~~g~i~v-d~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 377 (477)
+++.|+....... .++.+++.++++.|.+ ++.+.|+++++||+|||-.+..+..+|.++|+.+|+.+-
T Consensus 2048 ~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2048 ILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred eeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHH
Confidence 9999987654443 6788899998887775 455889999999999999999999999999999999874
No 82
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=155.85 Aligned_cols=265 Identities=20% Similarity=0.231 Sum_probs=163.7
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
+.+|||||+||.+||.+|+.+ ..+|+|+...+ +......|.....+++++.+... +..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass----------------~vksvtn~~~i~~ylekfdv~eq----~~~ 60 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS----------------FVKSVTNYQKIGQYLEKFDVKEQ----NCH 60 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH----------------HHHHHhhHHHHHHHHHhcCcccc----chh
Confidence 368999999999999999987 47899997632 22444455555555555554422 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~ 202 (477)
.+.+.....+. + +...+..+..+.+.+| ..+.|++|+++||++|...-+.. ...+.
T Consensus 61 elg~~f~~~~~-----------~---------v~~~~s~ehci~t~~g--~~~ky~kKOG~tg~kPklq~E~~--n~~Iv 116 (334)
T KOG2755|consen 61 ELGPDFRRFLN-----------D---------VVTWDSSEHCIHTQNG--EKLKYFKLCLCTGYKPKLQVEGI--NPKIV 116 (334)
T ss_pred hhcccHHHHHH-----------h---------hhhhccccceEEecCC--ceeeEEEEEEecCCCcceeecCC--CceEE
Confidence 22222211111 1 1223556667788888 78999999999999995433211 22232
Q ss_pred ---cchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcC------
Q 011787 203 ---SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQK------ 269 (477)
Q Consensus 203 ---~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~g------ 269 (477)
..+....+ ....|.|.|+|.|-+++|++..+. +.+|+|....+.+.. .+|+.+.+.+...|+..+
T Consensus 117 ~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~ia 194 (334)
T KOG2755|consen 117 GIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIA 194 (334)
T ss_pred EEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhh
Confidence 22332222 234899999999999999998884 457898888877754 567766666554441110
Q ss_pred ------cEEEeCce-----------------------------------EEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787 270 ------MKFMLKTK-----------------------------------VVGVDLSGDGVKLTLEPAAGGEKTILEADVV 308 (477)
Q Consensus 270 ------v~~~~~~~-----------------------------------v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v 308 (477)
++.+.++. +..+....+...++..+...+....+.||.+
T Consensus 195 iKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~i 274 (334)
T KOG2755|consen 195 IKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFI 274 (334)
T ss_pred hhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEE
Confidence 00000000 0000000000011111111223347789999
Q ss_pred EEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787 309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (477)
Q Consensus 309 i~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~ 357 (477)
+.++|..||.+. .-...+...++|++.||+.|+|+.|++||+||++.
T Consensus 275 vSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 275 VSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred EeccccCcCceE--EecChhhhccccCeeehhhccccccceeeecceec
Confidence 999999999984 33334777888999999999999999999999875
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.82 E-value=8.7e-20 Score=163.31 Aligned_cols=187 Identities=35% Similarity=0.493 Sum_probs=117.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHHH
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM 124 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (477)
||+|||||+||++||.+|++.+.+|+|+|+.+.. +....|++...+............ .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 59 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHRHEFLP-A----------------- 59 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHHHHHHH-H-----------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccc---cccccccccccccccccccccccc-c-----------------
Confidence 7999999999999999999999999999874321 111222222221111111100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCeEE-EEeEEEEecCCEE-------EE-EecCCceEEEEecEEEEccCCCCC--CCCC
Q 011787 125 MAQKDKAVSNLTRGIEGLFKKNKVTY-VKGYGKFISPSEV-------SV-DTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (477)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-------~v-~~~~g~~~~i~~d~lvlAtG~~~~--~~~g 193 (477)
. + ..+.+.+...++++ +...+..++.... .+ ....+...++.||+||||||+.|. .+|+
T Consensus 60 --------~-~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 60 --------R-L-FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp --------H-H-GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred --------c-c-cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 0 0 01112223446666 3334444432221 22 112334588999999999999874 5566
Q ss_pred Cc--cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787 194 IT--IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (477)
Q Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 271 (477)
.+ .....+.++.++......+++++|||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-------------------------------------------------- 159 (201)
T PF07992_consen 130 EEVAYFLRGVDDAQRFLELLESPKRVAVVG-------------------------------------------------- 159 (201)
T ss_dssp TTTECBTTSEEHHHHHHTHSSTTSEEEEES--------------------------------------------------
T ss_pred Cccccccccccccccccccccccccccccc--------------------------------------------------
Confidence 42 22245677777777766777999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya 351 (477)
...+. +..+++++++|++.||+++||+.|||||
T Consensus 160 ----------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya 192 (201)
T PF07992_consen 160 ----------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYA 192 (201)
T ss_dssp ----------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE
T ss_pred ----------------------------------------------ccccc-cccccccccccccccccccccccccccc
Confidence 33322 7788999999999999999999999999
Q ss_pred ecccCCCC
Q 011787 352 IGDVIPGP 359 (477)
Q Consensus 352 ~GD~~~~~ 359 (477)
+|||++.+
T Consensus 193 ~GD~a~~~ 200 (201)
T PF07992_consen 193 AGDCAGIY 200 (201)
T ss_dssp -GGGBEES
T ss_pred cccccccC
Confidence 99998643
No 84
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.82 E-value=4.3e-19 Score=169.65 Aligned_cols=267 Identities=21% Similarity=0.295 Sum_probs=135.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCC---ceeeccCcc--C---chhhhhhhHHHHHHHhhhhhCCcc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG---GTCLNVGCI--P---SKALLHSSHMYHEAMHSFASHGVK 113 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~G---G~~~~~~~~--p---~~~l~~~~~~~~~~~~~~~~~g~~ 113 (477)
.+|+++||.||++|+.|..|.+.+ .++..+|+.+.+. |+.+....+ | ....+..+.....+.+++...+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 489999999999999999999885 8999999876542 222111100 0 000000000001111111111110
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC------CEEEEEe--cCCceEEEEecEEEEcc
Q 011787 114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP------SEVSVDT--IEGGNTVVKGKNIIIAT 184 (477)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~------~~~~v~~--~~g~~~~i~~d~lvlAt 184 (477)
..- ++.... .........+++|.. ++..-.+..+ ++..+.. ..+.|.+ .+|....+.+++|||||
T Consensus 82 ~~f--~~~~~~-~p~R~ef~dYl~Wva---~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 82 YEF--YNRGYF-FPSRREFNDYLRWVA---EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHH--HHH--S-S-BHHHHHHHHHHHH---CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred hhh--hhcCCC-CCCHHHHHHHHHHHH---HhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 000 000000 001111222333333 3333212222 3444322 1356665 34556899999999999
Q ss_pred CCCCCCCCCCc-cC-CceEecchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCC----
Q 011787 185 GSDVKSLPGIT-ID-EKRIVSSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSM---- 253 (477)
Q Consensus 185 G~~~~~~~g~~-~~-~~~~~~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~---- 253 (477)
|..|..|+... .. ...++++.+.... ...+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+..
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 98886555444 22 2556665554433 3457999999999999999999988875 899999998775422
Q ss_pred -----CHH-------------------------------HHHHHHH-----HH-HhcCcEEEeCceEEEEEEcC-CeEEE
Q 011787 254 -----DGE-------------------------------IRKQFQR-----SL-EKQKMKFMLKTKVVGVDLSG-DGVKL 290 (477)
Q Consensus 254 -----~~~-------------------------------~~~~~~~-----~l-~~~gv~~~~~~~v~~i~~~~-~~~~v 290 (477)
+|+ +.+.+.+ .+ .+..+.++.+++|++++..+ +++.+
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 221 1111111 11 23357899999999998887 58999
Q ss_pred EEeecCCCceEEEEcCEEEEeecCC
Q 011787 291 TLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 291 ~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
++.+...+...++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 9998778888899999999999974
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.81 E-value=7.8e-19 Score=157.40 Aligned_cols=189 Identities=18% Similarity=0.258 Sum_probs=103.3
Q ss_pred EEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHHHH
Q 011787 47 VVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMM 125 (477)
Q Consensus 47 vIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 125 (477)
+|||||||||++|.+|.+.|.+ ++|+|+++.+||.|......+... .... +. ...+++ .-..+......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~--~~~~-~~------~~~~~~-~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLH--SPSF-FS------SDFGLP-DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-B--SSSC-CT------GGSS---CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccc--cCcc-cc------ccccCC-cccccccccCC
Confidence 6999999999999999999999 999999999999987533111100 0000 00 000000 00000000000
Q ss_pred HHH----HHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEecCCceEEEEecEEEEccCC--CCCCCCCCcc
Q 011787 126 AQK----DKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITI 196 (477)
Q Consensus 126 ~~~----~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~--~~~~~~g~~~ 196 (477)
.+. ......+.+++..+.++.++++..+ .+..+ +.+.+.|.+.++ +++++|+||+|||. .|. +|.++.
T Consensus 71 ~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~p~-~p~~~g 147 (203)
T PF13738_consen 71 EWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSHPR-IPDIPG 147 (203)
T ss_dssp HHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCSB----S-TT
T ss_pred CCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCCCC-cccccc
Confidence 000 0011223344555566666665443 23332 244488888887 78999999999996 443 222222
Q ss_pred -CCceEecchhhhcc-cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787 197 -DEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (477)
Q Consensus 197 -~~~~~~~~~~~~~~-~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~ 248 (477)
.....+++.+.... ...+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 148 ~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 148 SAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 12244555444433 33479999999999999999999999999999999874
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.4e-19 Score=173.86 Aligned_cols=198 Identities=20% Similarity=0.303 Sum_probs=123.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccc
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 117 (477)
+.+.++||+|||||++|+++|++|++.|.. ++|+||++.+||+|.+. +.|+..+......+ .+....+..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-ry~~l~~~~p~~~~-----~~~~~p~~~--- 74 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKWLL-----GFPFLPFRW--- 74 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-cCCceEECCchhee-----ccCCCccCC---
Confidence 345679999999999999999999999988 99999999999997552 23332221111111 011111110
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe--EEEEe-cCCEEEEEecCCceEEEEecEEEEccCC--CC--CC
Q 011787 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG--YGKFI-SPSEVSVDTIEGGNTVVKGKNIIIATGS--DV--KS 190 (477)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~v~~~~g~~~~i~~d~lvlAtG~--~~--~~ 190 (477)
...+... ......+..+++.+-.+..+.+... .+.+. +...++|.++++...++.+|.||+|||- .| +.
T Consensus 75 ~~~~~~~----~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 75 DEAFAPF----AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD 150 (443)
T ss_pred cccCCCc----ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC
Confidence 0011111 1111111122222222223333322 12222 2346888887774434789999999995 34 34
Q ss_pred CCCCc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 191 LPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 191 ~~g~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
++|.+ +.+..+++.+........+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus 151 ~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 151 FAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 55554 344445555544455566999999999999999999999999999999998865
No 87
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=7.9e-17 Score=149.57 Aligned_cols=331 Identities=19% Similarity=0.274 Sum_probs=197.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCC---CceeeccCc--cC-chhhh--hhhHHHHHHHhhhhh
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGAL---GGTCLNVGC--IP-SKALL--HSSHMYHEAMHSFAS 109 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~---GG~~~~~~~--~p-~~~l~--~~~~~~~~~~~~~~~ 109 (477)
+|+..+|++.||-||+-|+.|+.|...+ .+...+||.+.+ .|+.+-... +| -+.+. ..+.....+.+++.+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 3567799999999999999999999874 889999997754 243322111 11 01111 111112222333333
Q ss_pred CCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEE---EecCCE---EEEEecCCceEEEEecEEEEc
Q 011787 110 HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK---FISPSE---VSVDTIEGGNTVVKGKNIIIA 183 (477)
Q Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~---~~v~~~~g~~~~i~~d~lvlA 183 (477)
.+-.+. ..++..+... +.....++.|....+.. +++ ...+. .++.+. ..+.+.++ ..++++.|||+
T Consensus 81 h~RLy~--Fl~~e~f~i~-R~Ey~dY~~Waa~~l~~--~rf-g~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~lVlg 152 (436)
T COG3486 81 HGRLYE--FLNYETFHIP-RREYNDYCQWAASQLPS--LRF-GEEVTDISSLDGDAVVRLFVVTANG--TVYRARNLVLG 152 (436)
T ss_pred cchHhh--hhhhhccccc-HHHHHHHHHHHHhhCCc--ccc-CCeeccccccCCcceeEEEEEcCCC--cEEEeeeEEEc
Confidence 221111 0111111111 11122233333333311 111 11222 333322 23555555 58999999999
Q ss_pred cCCCCCCCCCCc-cCCceEecchhhhc-ccC-C-CCeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcCCC---
Q 011787 184 TGSDVKSLPGIT-IDEKRIVSSTGALA-LNE-V-PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIVPS--- 252 (477)
Q Consensus 184 tG~~~~~~~g~~-~~~~~~~~~~~~~~-~~~-~-~~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~~~--- 252 (477)
+|.+|..||... .....++++.++.. ..+ . .++|.|||+|.+|.|+-..|... ..++.|+.|+..+.|.
T Consensus 153 ~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S 232 (436)
T COG3486 153 VGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS 232 (436)
T ss_pred cCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccc
Confidence 999998776544 33445665555543 222 2 34499999999999998887643 3458899999887652
Q ss_pred ------CCHHHHH------------------------------HHHH-----HHH--hcCcEEEeCceEEEEEEcCCe-E
Q 011787 253 ------MDGEIRK------------------------------QFQR-----SLE--KQKMKFMLKTKVVGVDLSGDG-V 288 (477)
Q Consensus 253 ------~~~~~~~------------------------------~~~~-----~l~--~~gv~~~~~~~v~~i~~~~~~-~ 288 (477)
|.|+..+ .+-+ .+. +..+.++.+++|..++..+++ +
T Consensus 233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~ 312 (436)
T COG3486 233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY 312 (436)
T ss_pred hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE
Confidence 2221111 1111 111 246889999999999988766 7
Q ss_pred EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCcccc--ceeecCCCCeecCCCCC--C--C-CCCeEEecccC-----
Q 011787 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI--GVETDKMGRIPVNERFA--T--N-IPGVYAIGDVI----- 356 (477)
Q Consensus 289 ~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~--gl~~~~~g~i~vd~~l~--t--~-~~~vya~GD~~----- 356 (477)
.+.+....+++..++++|.||+|||++...+.+ ++.+ .+..+++|...|++.++ . + .-.||+.|-+.
T Consensus 313 ~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi 391 (436)
T COG3486 313 RLTLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI 391 (436)
T ss_pred EEEEeeccCCCceEEEeeEEEEecccccCCchh-hhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc
Confidence 888888778888999999999999999665533 3332 26678889999998764 2 1 23699999776
Q ss_pred CCCCchhHHHHHHHHHHHHHcCC
Q 011787 357 PGPMLAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~ 379 (477)
+.|.+.-.|.+.+.++ +.+++.
T Consensus 392 g~pdLsl~a~Raa~I~-~~L~g~ 413 (436)
T COG3486 392 GAPDLSLGAWRAAVIL-NSLLGR 413 (436)
T ss_pred CCccchHHHHHHHHHH-HHHhCc
Confidence 3466666777666554 444454
No 88
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.78 E-value=4.8e-17 Score=158.99 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=118.5
Q ss_pred eEEEcccHHHHHHH-HHHH----HcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEE
Q 011787 217 LVVIGAGYIGLEMG-SVWA----RLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291 (477)
Q Consensus 217 v~IiG~G~~g~e~a-~~l~----~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~ 291 (477)
=.|++.+.+|+|.+ ..+. +.|.+|+++...+..++.. ++.+.+.+.+++.|+++++++.|.+++.+++++...
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 47789999999998 6664 5799999998888877653 688889999999999999999999998777666543
Q ss_pred EeecCCCceEEEEcCEEEEeecCCCCCCCC---------------------------------CccccceeecCCCCeec
Q 011787 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGL---------------------------------GLDKIGVETDKMGRIPV 338 (477)
Q Consensus 292 ~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l---------------------------------~~~~~gl~~~~~g~i~v 338 (477)
.. .++....+++|.+|+|+|+.+..... ++.+.|+.+|+. ...+
T Consensus 296 ~~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~ 372 (422)
T PRK05329 296 WT--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPL 372 (422)
T ss_pred Ee--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcc
Confidence 32 22344679999999999987554320 123445555543 4445
Q ss_pred CCCCCCCCCCeEEecccCCCCCch------hHHHHHHHHHHHHHcC
Q 011787 339 NERFATNIPGVYAIGDVIPGPMLA------HKAEEDGVACVEFLAG 378 (477)
Q Consensus 339 d~~l~t~~~~vya~GD~~~~~~~~------~~A~~~g~~aa~~i~~ 378 (477)
|...++..+||||+|++.+++..+ -.|...|-.||++|..
T Consensus 373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 373 DSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred cCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 666667799999999999887644 4678888888888864
No 89
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.77 E-value=1.1e-16 Score=155.84 Aligned_cols=282 Identities=16% Similarity=0.195 Sum_probs=162.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHH-HCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~-~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
+...+|+||||||||++||.+|. +.|++|+|+|+.+.+||... .+..|...
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR-~GVaPdh~--------------------------- 88 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR-YGVAPDHI--------------------------- 88 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE-EeCCCCCc---------------------------
Confidence 34578999999999999999865 56999999999999999754 33333210
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCC-------
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP------- 192 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~------- 192 (477)
. .+.+...+...+...++++. +.+.. .. .+..++ ..-.||.||+|||+.+..+|
T Consensus 89 ~-----------~k~v~~~f~~~~~~~~v~f~-gnv~V-G~---Dvt~ee---L~~~YDAVIlAtGA~~l~ipi~~~~~~ 149 (506)
T PTZ00188 89 H-----------VKNTYKTFDPVFLSPNYRFF-GNVHV-GV---DLKMEE---LRNHYNCVIFCCGASEVSIPIGQQDED 149 (506)
T ss_pred c-----------HHHHHHHHHHHHhhCCeEEE-eeeEe-cC---ccCHHH---HHhcCCEEEEEcCCCCCCCCcccccce
Confidence 0 01112222233444566665 22111 10 111111 22379999999999987666
Q ss_pred -----CCccC--CceEecchhhhcc-------------c------CCCCeeEEEcccHHHHHHHHHHH------------
Q 011787 193 -----GITID--EKRIVSSTGALAL-------------N------EVPKKLVVIGAGYIGLEMGSVWA------------ 234 (477)
Q Consensus 193 -----g~~~~--~~~~~~~~~~~~~-------------~------~~~~~v~IiG~G~~g~e~a~~l~------------ 234 (477)
+.+.. ...+++..++..+ . ...++++|||+|..++++|..|.
T Consensus 150 ~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~ 229 (506)
T PTZ00188 150 KAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDIS 229 (506)
T ss_pred eeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCc
Confidence 43211 1233333332111 0 12478999999999999998742
Q ss_pred --------HcCC-cEEEEEeCCCcCCCCC-------------------HH-----------------------HHHHHHH
Q 011787 235 --------RLGS-EVTVVEFAADIVPSMD-------------------GE-----------------------IRKQFQR 263 (477)
Q Consensus 235 --------~~g~-~Vtli~~~~~~~~~~~-------------------~~-----------------------~~~~~~~ 263 (477)
+.+. +|+++.|+...-..|. ++ ..+.+.+
T Consensus 230 ~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~ 309 (506)
T PTZ00188 230 SDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKN 309 (506)
T ss_pred HHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHH
Confidence 3233 5888888764321110 11 1112222
Q ss_pred HHH----------hcCcEEEeCceEEEEEEcCCeEE-EEEee--------cCCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787 264 SLE----------KQKMKFMLKTKVVGVDLSGDGVK-LTLEP--------AAGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (477)
Q Consensus 264 ~l~----------~~gv~~~~~~~v~~i~~~~~~~~-v~~~~--------~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (477)
... .+-+.+++.....+|...++.+. ++++. ..+++.+.++||+|+-++|++...- .
T Consensus 310 ~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~----~ 385 (506)
T PTZ00188 310 YEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF----A 385 (506)
T ss_pred HHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----C
Confidence 221 13466777777888875333332 44432 1245567899999999999997642 2
Q ss_pred ccceeecCCCCeecCCCCC--CCCCCeEEecccCCCCCc-hhHHHHHHHHHHHHHcC
Q 011787 325 KIGVETDKMGRIPVNERFA--TNIPGVYAIGDVIPGPML-AHKAEEDGVACVEFLAG 378 (477)
Q Consensus 325 ~~gl~~~~~g~i~vd~~l~--t~~~~vya~GD~~~~~~~-~~~A~~~g~~aa~~i~~ 378 (477)
|+++|. . +... ..+ +..|++|++|.+-.+|.- ...-+.++...+..|+.
T Consensus 386 --g~pFd~-~-~~n~-~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~ 437 (506)
T PTZ00188 386 --ENLYNQ-S-VQMF-KEDIGQHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVLN 437 (506)
T ss_pred --CCCccc-c-CCCC-CCcccCCCCCcEEeeecCcCCCceeccCcccHHHHHHHHHH
Confidence 345552 2 2222 111 237999999999987762 22233445555555543
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.75 E-value=1.1e-16 Score=150.67 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=129.5
Q ss_pred CCceEEEEecEEEEccCCCCCCCCC---Cc-cCCceEecchhhhccc----------------CCCCeeEEE---cccH-
Q 011787 169 EGGNTVVKGKNIIIATGSDVKSLPG---IT-IDEKRIVSSTGALALN----------------EVPKKLVVI---GAGY- 224 (477)
Q Consensus 169 ~g~~~~i~~d~lvlAtG~~~~~~~g---~~-~~~~~~~~~~~~~~~~----------------~~~~~v~Ii---G~G~- 224 (477)
+++..++..-.+|+|||-.+..... ++ .....++|..++.++. +.||+|+.| |+-.
T Consensus 293 ~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~ 372 (622)
T COG1148 293 EPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDF 372 (622)
T ss_pred CCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCc
Confidence 3455678899999999988753321 11 1223566655555432 237888877 5443
Q ss_pred -------------HHHHHHHHHHHc--CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeE
Q 011787 225 -------------IGLEMGSVWARL--GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGV 288 (477)
Q Consensus 225 -------------~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~ 288 (477)
.++-.|+.++++ ..+|++++..-+-.. ....+.+.+.-++.||.++.+ ++.+|... ++.+
T Consensus 373 ~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l 448 (622)
T COG1148 373 QVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL 448 (622)
T ss_pred ccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC---ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee
Confidence 122223333333 357887776544332 223333344445779999865 45555444 4456
Q ss_pred EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-ccccceeecCCCCeecC-CCCC---CCCCCeEEecccCCCCCchh
Q 011787 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVETDKMGRIPVN-ERFA---TNIPGVYAIGDVIPGPMLAH 363 (477)
Q Consensus 289 ~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-~~~~gl~~~~~g~i~vd-~~l~---t~~~~vya~GD~~~~~~~~~ 363 (477)
.+..++...+...++++|+|++++|..|....-. ...+||..+++|++... +.++ |+.+|||.+|-+. +|.-..
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq-gPkdI~ 527 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ-GPKDIA 527 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc-CCccHH
Confidence 7777777777788999999999999999654211 34568999999998865 5554 7899999999664 677677
Q ss_pred HHHHHHHHHHHHH
Q 011787 364 KAEEDGVACVEFL 376 (477)
Q Consensus 364 ~A~~~g~~aa~~i 376 (477)
.+..||..||...
T Consensus 528 ~siaqa~aAA~kA 540 (622)
T COG1148 528 DSIAQAKAAAAKA 540 (622)
T ss_pred HHHHHhHHHHHHH
Confidence 7777776665443
No 91
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=1.2e-16 Score=155.93 Aligned_cols=305 Identities=17% Similarity=0.219 Sum_probs=163.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc-
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV- 119 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~- 119 (477)
+...+|+|||||||||.+|+.|.+.|++++++||.+.+||.|.+...... ..+..|..+...+...-..+.+.++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~----~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEV----VHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccc----cccchhhhhhccCChhhhcCCCCCCc
Confidence 34579999999999999999999999999999999999999987643220 0011122222111111111111111
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHhhhCC----eEEEEeE--EEEecCCEEEEEecCCc--eEEEEecEEEEccCCC--C
Q 011787 120 -DLPAMMAQKDKAVSNLTRGIEGLFKKNK----VTYVKGY--GKFISPSEVSVDTIEGG--NTVVKGKNIIIATGSD--V 188 (477)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~--~~~~~~~~~~v~~~~g~--~~~i~~d~lvlAtG~~--~ 188 (477)
+.+..++...+ +.+++..+.+..+ +++-... +...+++.+.|...+.. ....-||.|++|||-. |
T Consensus 80 ~~~~~~~p~~~e----~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P 155 (448)
T KOG1399|consen 80 ERDPRYFPSHRE----VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEP 155 (448)
T ss_pred ccCcccCCCHHH----HHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCC
Confidence 11122222222 2222333333333 3332222 22233246777665543 3578899999999977 4
Q ss_pred C--CCCCC--c-cCCceEecchhhh-cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHH
Q 011787 189 K--SLPGI--T-IDEKRIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQ 262 (477)
Q Consensus 189 ~--~~~g~--~-~~~~~~~~~~~~~-~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 262 (477)
. .+|+. + ..+ .++++.+.. .-....|+|+|||.|.+|+|++..+++...+|++..+ ..........
T Consensus 156 ~~P~~~g~~~~~f~G-~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~~~------ 227 (448)
T KOG1399|consen 156 RIPQIPGPGIESFKG-KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEPPE------ 227 (448)
T ss_pred CCCcCCCCchhhcCC-cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccccc------
Confidence 2 33442 2 333 344444433 3334579999999999999999999999888888765 2000000000
Q ss_pred HHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc--eeecCCCCeecCC
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG--VETDKMGRIPVNE 340 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~g~i~vd~ 340 (477)
. ...++..+ . .+..+ .+.+..+. .++....+|.+|+|||+.=...++ +..+ ...++....
T Consensus 228 -~-~~~~~~~~-~-~i~~~--~e~~~~~~------~~~~~~~~D~ii~ctgy~y~fPfl--~~~~~~~~~~~~~~p---- 289 (448)
T KOG1399|consen 228 -I-LGENLWQV-P-SIKSF--TEDGSVFE------KGGPVERVDRIIFCTGYKYKFPFL--ETLGLGTVRDNIVGP---- 289 (448)
T ss_pred -e-eecceEEc-c-ccccc--cCcceEEE------cCceeEEeeeEEEeeeeEeeccee--ccCCceeeccCcccc----
Confidence 0 01122222 1 13333 22222222 155688899999999988766653 2221 111111000
Q ss_pred CCCCCCCCeEEec-ccCCCC---CchhHHHHHHHHHHHHHcCC
Q 011787 341 RFATNIPGVYAIG-DVIPGP---MLAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 341 ~l~t~~~~vya~G-D~~~~~---~~~~~A~~~g~~aa~~i~~~ 379 (477)
-...-.|..++-| ..+..+ ...+....|++.+++-+.|.
T Consensus 290 l~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448)
T KOG1399|consen 290 LYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448)
T ss_pred hheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence 0112234444444 222221 12345677888888888765
No 92
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.74 E-value=4.5e-18 Score=151.70 Aligned_cols=291 Identities=16% Similarity=0.219 Sum_probs=170.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-C-CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQL-G-LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~-g-~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
..+++|+|||||.+|++.|..+.+. + -+|.|||+.+.-- --|...+....... +....-
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy-------YQPgfTLvGgGl~~------l~~srr------ 97 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY-------YQPGFTLVGGGLKS------LDSSRR------ 97 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcc-------cCcceEEeccchhh------hhhccC------
Confidence 3579999999999999999999876 4 5799999854210 00111111100000 000000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCc-
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT- 195 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~- 195 (477)
....+++ .+.+.++..+...+++.-+|.+.+| ++|+||++|||+|-+-. .++|+.
T Consensus 98 -~~a~liP-------------------~~a~wi~ekv~~f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl~E 155 (446)
T KOG3851|consen 98 -KQASLIP-------------------KGATWIKEKVKEFNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGLVE 155 (446)
T ss_pred -ccccccc-------------------CCcHHHHHHHHhcCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcChHh
Confidence 0000000 0111122223345677778888888 89999999999998753 466543
Q ss_pred -cCCceEec---chhh-------hcccC------CC-CeeEEEcccHHHHHHHHH-HHHcCC--cEEEEEeCCCcCCCCC
Q 011787 196 -IDEKRIVS---STGA-------LALNE------VP-KKLVVIGAGYIGLEMGSV-WARLGS--EVTVVEFAADIVPSMD 254 (477)
Q Consensus 196 -~~~~~~~~---~~~~-------~~~~~------~~-~~v~IiG~G~~g~e~a~~-l~~~g~--~Vtli~~~~~~~~~~~ 254 (477)
.+...+.+ .... .+.++ .| ..+--.|+-.-.+-++.. +++.|. ++.++......--.--
T Consensus 156 al~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgV 235 (446)
T KOG3851|consen 156 ALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGV 235 (446)
T ss_pred hccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecH
Confidence 22223322 1111 11111 11 223334665555555544 566665 4556554432111113
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g 334 (477)
+...+.+++..++++|++.....+.++..++.....+.-+ +.|..++++++++-+....++... +.+.. -.|..|
T Consensus 236 k~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~-kPG~t~ei~yslLHv~Ppms~pe~---l~~s~-~adktG 310 (446)
T KOG3851|consen 236 KHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD-KPGVTEEIEYSLLHVTPPMSTPEV---LANSD-LADKTG 310 (446)
T ss_pred HHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC-CCCceeEEeeeeeeccCCCCChhh---hhcCc-ccCccc
Confidence 5677888999999999999999999997665443332211 336667899998887665554332 34443 346779
Q ss_pred CeecCCC-CC-CCCCCeEEecccCCCCCchh--HHHHHHHHHHHHHc
Q 011787 335 RIPVNER-FA-TNIPGVYAIGDVIPGPMLAH--KAEEDGVACVEFLA 377 (477)
Q Consensus 335 ~i~vd~~-l~-t~~~~vya~GD~~~~~~~~~--~A~~~g~~aa~~i~ 377 (477)
++.||.. +| +..||||++|||.+.|..-. .+..|...+-+|+.
T Consensus 311 fvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 311 FVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 9999975 77 78999999999999887433 33445566667764
No 93
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.74 E-value=1.5e-17 Score=132.64 Aligned_cols=86 Identities=48% Similarity=0.805 Sum_probs=81.4
Q ss_pred CceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHH
Q 011787 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAA 467 (477)
Q Consensus 388 ~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~ 467 (477)
+|+++|++|+++++|+||++|++.++++++...++....++...+++++++|+++|++|++|||+|++|++++|+||.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~ 80 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA 80 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhcCC
Q 011787 468 MATHDK 473 (477)
Q Consensus 468 ~~~~~~ 473 (477)
++|.++
T Consensus 81 ~ai~~~ 86 (110)
T PF02852_consen 81 LAIQNG 86 (110)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 999854
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.69 E-value=1.1e-15 Score=139.94 Aligned_cols=284 Identities=18% Similarity=0.264 Sum_probs=164.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (477)
+...+|+|||+||||+.+|.+|.+. +.+|.|+|+.+.+.|. .++|..|..+...
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvK----------------------- 73 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVK----------------------- 73 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchh-----------------------
Confidence 3456899999999999999999884 6899999999888885 3344444221100
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCc
Q 011787 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGIT 195 (477)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~ 195 (477)
+....+...++.....++-+--.. ..+.+. +.+-.||.+|||.|+... .+||.+
T Consensus 74 ---------------nvintFt~~aE~~rfsf~gNv~vG-----~dvsl~---eL~~~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 74 ---------------NVINTFTKTAEHERFSFFGNVKVG-----RDVSLK---ELTDNYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred ---------------hHHHHHHHHhhccceEEEecceec-----ccccHH---HHhhcccEEEEEecCCCCcccCCCCcc
Confidence 000001112222233333221000 011211 134579999999998762 567654
Q ss_pred cCCceEecchhhhccc------------CCCCeeEEEcccHHHHHHHHHHHHc---------------------C-CcEE
Q 011787 196 IDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWARL---------------------G-SEVT 241 (477)
Q Consensus 196 ~~~~~~~~~~~~~~~~------------~~~~~v~IiG~G~~g~e~a~~l~~~---------------------g-~~Vt 241 (477)
...+++.+.+..+. ....+++|||.|..++++|..|..- . .+|+
T Consensus 131 --l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~ 208 (468)
T KOG1800|consen 131 --LSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVK 208 (468)
T ss_pred --cccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEE
Confidence 45577766654432 2268999999999999999886422 1 2688
Q ss_pred EEEeCCCcCCCCC--------------------------------------HHHHHHHHHHHHhc---------CcE---
Q 011787 242 VVEFAADIVPSMD--------------------------------------GEIRKQFQRSLEKQ---------KMK--- 271 (477)
Q Consensus 242 li~~~~~~~~~~~--------------------------------------~~~~~~~~~~l~~~---------gv~--- 271 (477)
++.|+......|- +.+.+.+.+.+.++ +..
T Consensus 209 lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~ 288 (468)
T KOG1800|consen 209 LVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWH 288 (468)
T ss_pred EEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhH
Confidence 8888765321110 12333333333321 111
Q ss_pred EEeCceEEEEEEcCCe---EEE--E-Ee---ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC
Q 011787 272 FMLKTKVVGVDLSGDG---VKL--T-LE---PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342 (477)
Q Consensus 272 ~~~~~~v~~i~~~~~~---~~v--~-~~---~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l 342 (477)
+.+.....+|..++++ +.+ + ++ ...+++.++++|++++.++|+....-. .|+.+|.+.++.-|...
T Consensus 289 ~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv~n~~G 363 (468)
T KOG1800|consen 289 LRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVVPNVNG 363 (468)
T ss_pred HHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcccCCCc
Confidence 1111122233333222 111 1 11 223566789999999999998865421 14555544444444433
Q ss_pred CC----CCCCeEEecccCCCCC-chhHHHHHHHHHHHHHcC
Q 011787 343 AT----NIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 343 ~t----~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 378 (477)
+. -.|++|++|-|..+|. ....+++++..+|+.|..
T Consensus 364 rV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800|consen 364 RVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred eEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHH
Confidence 32 3599999999998776 556688889888888863
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=1.1e-13 Score=132.66 Aligned_cols=331 Identities=16% Similarity=0.214 Sum_probs=183.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCc-------cCchhhhhh-hHHHHHHHhhhhhCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGC-------IPSKALLHS-SHMYHEAMHSFASHG 111 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~-------~p~~~l~~~-~~~~~~~~~~~~~~g 111 (477)
+++|+|||||++|+..|.+|.+. ...|.|+|+...+|+=..+... +|+..+.-. +....++..++...+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 37899999999999999999987 2339999999988843333322 333332222 222334444444431
Q ss_pred cccccc--ccChHHHHHHHHHHHHHHHHHHHHHhhhCC---eEEEEeEEEEecC----CEEEEEecCCceEEEEecEEEE
Q 011787 112 VKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKNK---VTYVKGYGKFISP----SEVSVDTIEGGNTVVKGKNIII 182 (477)
Q Consensus 112 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~----~~~~v~~~~g~~~~i~~d~lvl 182 (477)
....+. ...+..++....-+.+.+.+.+..++++.. +.+++..+..+.. ....+...+| ....+|-+|+
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--~~~~ad~~Vl 158 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--PSEIADIIVL 158 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--CeeeeeEEEE
Confidence 111100 001111111111112222333333444433 7777776554332 3456667777 7789999999
Q ss_pred ccCCCCCCCCCCc--c--CCceEecchhhhcc--cCCCCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCC--
Q 011787 183 ATGSDVKSLPGIT--I--DEKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPS-- 252 (477)
Q Consensus 183 AtG~~~~~~~g~~--~--~~~~~~~~~~~~~~--~~~~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~-- 252 (477)
|||..++..+... . ....+-+......+ .+...+|+|+|+|.+.++....+++.|. +||.++|+... |.
T Consensus 159 atgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~-~~~h 237 (474)
T COG4529 159 ATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLV-PRPH 237 (474)
T ss_pred eccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccc-cCCC
Confidence 9998765443311 1 11122222222222 2234569999999999999999999886 69999998732 21
Q ss_pred -----CC-------------------------------------------------------------------------
Q 011787 253 -----MD------------------------------------------------------------------------- 254 (477)
Q Consensus 253 -----~~------------------------------------------------------------------------- 254 (477)
.+
T Consensus 238 ~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R 317 (474)
T COG4529 238 IPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFR 317 (474)
T ss_pred CCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhh
Confidence 00
Q ss_pred --HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC------cccc
Q 011787 255 --GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG------LDKI 326 (477)
Q Consensus 255 --~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~------~~~~ 326 (477)
+++...+.+.+. .|.--+.-.++..|...+.+..+.+........+.+++|.||.|+|..+....-. +.+.
T Consensus 318 ~a~~v~~~~~~~~a-~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~ 396 (474)
T COG4529 318 LAPAVQAAVPQLLA-EGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGEN 396 (474)
T ss_pred hhHHHHhhhhHHhh-cchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhC
Confidence 011111111111 2322233445666666666655666544444567899999999999776543210 1122
Q ss_pred ceee-c-CCCCeecCCCCC------CCCCCeEEecccCCCCC----chhHHHHHHHHHHHHHc
Q 011787 327 GVET-D-KMGRIPVNERFA------TNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLA 377 (477)
Q Consensus 327 gl~~-~-~~g~i~vd~~l~------t~~~~vya~GD~~~~~~----~~~~A~~~g~~aa~~i~ 377 (477)
|+.. + ...++.|++..+ +..+++||+|..+.+-. ..+.-..|+..+|..++
T Consensus 397 Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 397 GLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 3322 1 134567776654 45789999999985431 23344556656666655
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.48 E-value=7.8e-13 Score=98.79 Aligned_cols=78 Identities=38% Similarity=0.681 Sum_probs=73.4
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEe
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~ 293 (477)
+++|||||++|+|+|..|++.|.+|+++++++.+++.+++++.+.+++.++++||++++++.+++++.+++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999998877666664
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.41 E-value=9.9e-12 Score=116.32 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec--CCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG--RTPF 317 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G--~~p~ 317 (477)
.++.+.+...+++.||+++++++|.+++.++....+.+. +++++.||.+|+|+| ..|.
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~-----~g~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS-----SGETVKCDSLILATGGKSWPK 170 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC-----CCCEEEccEEEEecCCcCCCC
Confidence 467788889999999999999999999988877777765 556899999999999 4453
No 98
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.41 E-value=1.6e-12 Score=130.89 Aligned_cols=144 Identities=22% Similarity=0.294 Sum_probs=81.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccC-------c--hhh----------------hhhh
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP-------S--KAL----------------LHSS 97 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p-------~--~~l----------------~~~~ 97 (477)
++||+|||+|.||++||..+++.|.+|+|+||....+.++...+.++ + ..+ ....
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999654322222222110 0 000 0011
Q ss_pred HHHHHHHhhhhhCCccccccc----cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe--cCCEEE-EEecCC
Q 011787 98 HMYHEAMHSFASHGVKFSSVE----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVS-VDTIEG 170 (477)
Q Consensus 98 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~-v~~~~g 170 (477)
........++.++|+++.... ..+.............+.+.+....++.+++++.+.+..+ +...+. +.. ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CC
Confidence 111223355666777654211 1111111101111233444555566677899887765554 233332 333 44
Q ss_pred ceEEEEecEEEEccCCCCC
Q 011787 171 GNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 171 ~~~~i~~d~lvlAtG~~~~ 189 (477)
..+.++.||||||+...
T Consensus 160 --~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 160 --ELLKFDATVIATGGFSG 176 (466)
T ss_pred --EEEEeCeEEECCCcCcC
Confidence 57899999999998764
No 99
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.38 E-value=1.8e-11 Score=125.83 Aligned_cols=107 Identities=16% Similarity=0.266 Sum_probs=78.2
Q ss_pred ccCCCCeeEEEcccHHHHHHHHH-------HHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787 210 LNEVPKKLVVIGAGYIGLEMGSV-------WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (477)
Q Consensus 210 ~~~~~~~v~IiG~G~~g~e~a~~-------l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~ 282 (477)
+...|+.++++|++.++++++.. +.+.+.+|++....+.....+...+...+.+.+++.|+++++++.++++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 44567889999999999998865 66777777776555444445667788888899999999999999999998
Q ss_pred EcCCeEE-EEEeecCCCceEEEEcC-EEEEeec-CCCCC
Q 011787 283 LSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAG-RTPFT 318 (477)
Q Consensus 283 ~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G-~~p~~ 318 (477)
.+++++. +.... ++....+.++ .||+|+| +.+|.
T Consensus 236 ~~~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 236 VEDGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred EeCCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCH
Confidence 7666554 44432 3344578886 5888775 55543
No 100
>PRK09897 hypothetical protein; Provisional
Probab=99.36 E-value=1e-10 Score=117.96 Aligned_cols=201 Identities=16% Similarity=0.126 Sum_probs=108.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCC-ceeeccCccCchhhhh---------hhHHHHHHHhh----
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALG-GTCLNVGCIPSKALLH---------SSHMYHEAMHS---- 106 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~G-G~~~~~~~~p~~~l~~---------~~~~~~~~~~~---- 106 (477)
+++|+||||||+|+++|.+|.+.+ .+|+|+|++..+| |.. +...-++..+.. ....+..+...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a-ys~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP-YSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee-ecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 358999999999999999998864 5899999988888 542 222111111110 01111111110
Q ss_pred -hhhCCccccccccChHHHHH--HHHHHHHHHHHHHHHHhhhCC--eEEEEe-EEEEec--CCEEEEEecCCceEEEEec
Q 011787 107 -FASHGVKFSSVEVDLPAMMA--QKDKAVSNLTRGIEGLFKKNK--VTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGK 178 (477)
Q Consensus 107 -~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d 178 (477)
+...++..... +-..+.+ ...+++......+...+...+ ++++.. .+..+. .+.+.+.+.++ ...+.+|
T Consensus 80 ~~~~~g~~~~~l--~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-g~~i~aD 156 (534)
T PRK09897 80 HLQRYGVKKETL--HDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-LPSETFD 156 (534)
T ss_pred HHHhcCCcceee--cCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-CeEEEcC
Confidence 11122221100 0001111 111222333333334444454 566544 555543 34566665443 2578999
Q ss_pred EEEEccCCCCCCCCCCccCCceEecchhhhcc-cCCCCeeEEEcccHHHHHHHHHHHHcC-------------------C
Q 011787 179 NIIIATGSDVKSLPGITIDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLG-------------------S 238 (477)
Q Consensus 179 ~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~v~IiG~G~~g~e~a~~l~~~g-------------------~ 238 (477)
+||||||..++..+.. ....+.+....... ...+.+|+|+|.|.++++.+..|...| .
T Consensus 157 ~VVLAtGh~~p~~~~~--~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~ 234 (534)
T PRK09897 157 LAVIATGHVWPDEEEA--TRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASE 234 (534)
T ss_pred EEEECCCCCCCCCChh--hccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCC
Confidence 9999999865432211 11112122211111 112689999999999999999987552 2
Q ss_pred --cEEEEEeCCCc
Q 011787 239 --EVTVVEFAADI 249 (477)
Q Consensus 239 --~Vtli~~~~~~ 249 (477)
+++.++|+..+
T Consensus 235 ~~~I~a~SRrGl~ 247 (534)
T PRK09897 235 KLNITLMSRTGIL 247 (534)
T ss_pred CceEEEEeCCCCC
Confidence 68888887764
No 101
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.35 E-value=2.3e-11 Score=116.53 Aligned_cols=312 Identities=21% Similarity=0.269 Sum_probs=152.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC--------CceeeccCccCc------------------hhhhhhhH
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL--------GGTCLNVGCIPS------------------KALLHSSH 98 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~--------GG~~~~~~~~p~------------------~~l~~~~~ 98 (477)
||+|||+|.|||++|+.|.+. ++|+|+.|...- ||.....+.-.+ ........
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999996533 344332221111 11111112
Q ss_pred HHHHHHhhhhhCCccccccc---cC--------hHHHHHHHHHHHHHHHHHHHHHhh-hCCeEEEEeE-EEE--ecCC-E
Q 011787 99 MYHEAMHSFASHGVKFSSVE---VD--------LPAMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGY-GKF--ISPS-E 162 (477)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~--~~~~-~ 162 (477)
......+++..+|++++... +. ...+....+...+.+...+....+ ..+|+++.+. +.. ++++ .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 22234456677888775322 11 111111112223334444443333 4689999884 322 2333 2
Q ss_pred E-EEEecC--CceEEEEecEEEEccCCCCCC------CCCCccCCc-------eEecchhhhcccCCCCeeEEEcccHHH
Q 011787 163 V-SVDTIE--GGNTVVKGKNIIIATGSDVKS------LPGITIDEK-------RIVSSTGALALNEVPKKLVVIGAGYIG 226 (477)
Q Consensus 163 ~-~v~~~~--g~~~~i~~d~lvlAtG~~~~~------~~g~~~~~~-------~~~~~~~~~~~~~~~~~v~IiG~G~~g 226 (477)
+ -+...+ ++...+.++.+|||||.-... |.....++- -...-.++.++. | +.+-.+ +-..
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFH--P-T~l~~~-~~~~ 243 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFH--P-TALYIP-QRRA 243 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeec--c-ceecCC-CCcc
Confidence 2 233222 235788999999999975421 211111110 000001111111 1 111111 1111
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcCCCCCH--------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCC
Q 011787 227 LEMGSVWARLGSEVTVVEFAADIVPSMDG--------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGG 298 (477)
Q Consensus 227 ~e~a~~l~~~g~~Vtli~~~~~~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~ 298 (477)
.-+...++-.|. +-+-..+.++++.+++ -++..+...+++.|-++++..+- +. +..+.
T Consensus 244 ~LiSEAVRGEGA-~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~--~~--~~~~~--------- 309 (518)
T COG0029 244 FLISEAVRGEGA-ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISH--IP--GDFFE--------- 309 (518)
T ss_pred ceeehhhhcCcc-EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccC--CC--chhhh---------
Confidence 111222333332 2333456667764432 24555666677666544432111 10 00010
Q ss_pred ceEEEEc-CEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC-----CCCchhHHHHH----
Q 011787 299 EKTILEA-DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-----GPMLAHKAEED---- 368 (477)
Q Consensus 299 ~~~~i~~-D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~-----~~~~~~~A~~~---- 368 (477)
++++. ...+...|..|..+.++.-. -.---.|+|.||.+.||++|++||+|.|+. ...+++++..+
T Consensus 310 --~rFP~I~~~c~~~GiD~~r~~IPV~P--aaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~ 385 (518)
T COG0029 310 --RRFPTIYAACLKAGIDPTREPIPVVP--AAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVF 385 (518)
T ss_pred --hhCcHHHHHHHHcCCCcccCccCccc--hhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHH
Confidence 11110 01122234444433221110 000125899999999999999999999983 34477776665
Q ss_pred HHHHHHHHcCC
Q 011787 369 GVACVEFLAGK 379 (477)
Q Consensus 369 g~~aa~~i~~~ 379 (477)
|..+|++|.+.
T Consensus 386 g~~aA~~i~~~ 396 (518)
T COG0029 386 GKRAAEDIAGR 396 (518)
T ss_pred HHHHHHHhhcc
Confidence 56778888765
No 102
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.34 E-value=1.7e-11 Score=126.67 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=82.4
Q ss_pred chhhhcccCCCCeeEEEcccH--HHHHHHHHHHHcCCcEEEEEeCCCcCCCCC--------------HHHHHHHHHHHHh
Q 011787 204 STGALALNEVPKKLVVIGAGY--IGLEMGSVWARLGSEVTVVEFAADIVPSMD--------------GEIRKQFQRSLEK 267 (477)
Q Consensus 204 ~~~~~~~~~~~~~v~IiG~G~--~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~--------------~~~~~~~~~~l~~ 267 (477)
.++..++...++++.|+|++. ++.+++..+...+..++++.+..++++.++ ..+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 455566777789999999998 899999999888888877665554443322 3566677888889
Q ss_pred cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCCC
Q 011787 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTPF 317 (477)
Q Consensus 268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~~p~ 317 (477)
.|+++++++.++++..+++++. +.+.. .+....+.++ .||+|+|..++
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVID--AGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence 9999999999999987766554 44432 1222457886 79999997764
No 103
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.34 E-value=1.9e-11 Score=123.96 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc-Ccc-----C----c----------------hhhhhh
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-----P----S----------------KALLHS 96 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-----p----~----------------~~l~~~ 96 (477)
++||+|||+|.||++||..+++.|. |+|+||....+|..... +.+ + . ..+...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999987666543221 110 0 0 000011
Q ss_pred hHHHHHHHhhhhhCCccccccc-----------cChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeE-EEEe--cCC
Q 011787 97 SHMYHEAMHSFASHGVKFSSVE-----------VDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGY-GKFI--SPS 161 (477)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~--~~~ 161 (477)
.........++..+|+++.... ..+.......+.....+...+.+..++ .+++++.++ +..+ +..
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 1112234455667777654211 000000000000112233344444444 589888774 3333 333
Q ss_pred EEE-EEecC-CceEEEEecEEEEccCCCCC
Q 011787 162 EVS-VDTIE-GGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 162 ~~~-v~~~~-g~~~~i~~d~lvlAtG~~~~ 189 (477)
.+. +...+ +....+.++.||+|||....
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 332 32222 33457899999999998653
No 104
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1.9e-11 Score=125.48 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG~ 81 (477)
..+||||||+|.||++||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 458999999999999999999 88999999999654 4553
No 105
>PRK08275 putative oxidoreductase; Provisional
Probab=99.32 E-value=3e-11 Score=124.34 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=80.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCC-Ccee-eccCc-----cC---------------------ch
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGAL-GGTC-LNVGC-----IP---------------------SK 91 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~-GG~~-~~~~~-----~p---------------------~~ 91 (477)
..+||||||||.||++||..+++. |.+|+|+||.... ||.. ...+. .+ ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 358999999999999999999987 6899999997653 2221 11100 01 00
Q ss_pred hhhhhhHHHHHHHhhhhhCCcccccc---ccChHHHHHH-----HHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--c-
Q 011787 92 ALLHSSHMYHEAMHSFASHGVKFSSV---EVDLPAMMAQ-----KDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--S- 159 (477)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~- 159 (477)
.+............++..+|+++... .+........ .......+...+....++.+++++..+ +..+ +
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 01111111123445566777766421 1111100000 000112233444455566789888774 3333 3
Q ss_pred CCEE-EE---EecCCceEEEEecEEEEccCCCC
Q 011787 160 PSEV-SV---DTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 160 ~~~~-~v---~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
...+ -+ ...+|....+.++.||||||+..
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 2222 12 23456456789999999999865
No 106
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.28 E-value=7.9e-11 Score=121.51 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=34.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCcee
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC 82 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~ 82 (477)
.+||+|||+|.||++||..+++. |.+|+|+||....+|.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 58999999999999999999987 47999999987666544
No 107
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.27 E-value=4e-11 Score=129.79 Aligned_cols=46 Identities=30% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCCeecCCCCCCCCCCeEEecccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787 333 MGRIPVNERFATNIPGVYAIGDVIPGP-MLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 333 ~g~i~vd~~l~t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~~ 378 (477)
.|+|.||.+++|++||+||+|||+..+ .....|...|+.|+.++..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 489999999999999999999997543 3444577788888887753
No 108
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.26 E-value=7.6e-11 Score=121.84 Aligned_cols=246 Identities=19% Similarity=0.229 Sum_probs=132.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhhhhhhHHHHHH---HhhhhhCCccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLHSSHMYHEA---MHSFASHGVKF 114 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l~~~~~~~~~~---~~~~~~~g~~~ 114 (477)
..++||+|||+|++|++||..+++.|++|+||||...+||++...+ |.|...+.......... ...+....
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 86 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHEL--- 86 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHh---
Confidence 3468999999999999999999999999999999888999887665 45655443322221111 11111100
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (477)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g 193 (477)
....+...+..+.+.. .+ ..+|+.+ .++++..... . ..+.....-.++|.+...+..
T Consensus 87 -~~~~~~~l~~~~~~~s----~~-~~~wl~~~~gv~~~~~~~-----------~-----~d~~~~~~~~~~ggr~~~~~~ 144 (581)
T PRK06134 87 -GARYDAARIDAFLEAG----PH-MVAFFERHTALRFADGNA-----------I-----PDYHGDTPGAATGGRSLIAAP 144 (581)
T ss_pred -CcCCCHHHHHHHHhcc----HH-HHHHHHhcCCceeeecCC-----------C-----CCCCCCCCCCCCCCCeeccCC
Confidence 0011111111111111 11 1233433 3555421100 0 000111112344544322111
Q ss_pred CccCCceEecchhhhcccCCCCeeEEEcccHHH-HHHHHHHHHcCCcEEEEEeCCCcCC--------------CCCHHHH
Q 011787 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG-LEMGSVWARLGSEVTVVEFAADIVP--------------SMDGEIR 258 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g-~e~a~~l~~~g~~Vtli~~~~~~~~--------------~~~~~~~ 258 (477)
.+ .... .++...+...+.++.++|++.++ .+++..+...+..+.+..+..+++. .....+.
T Consensus 145 ~~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 220 (581)
T PRK06134 145 FD--GREL--GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALV 220 (581)
T ss_pred CC--hhhh--hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHH
Confidence 11 1000 13344455556677788887765 6666666555544443322221111 1234566
Q ss_pred HHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEc-CEEEEeecCCCC
Q 011787 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEA-DVVLVSAGRTPF 317 (477)
Q Consensus 259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~-D~vi~a~G~~p~ 317 (477)
..+.+.+++.|++++++++++++..+++++. +.+.. ++....+.+ +.||+|+|-..+
T Consensus 221 ~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 221 ARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence 7788888999999999999999876666543 44432 122346888 999999986554
No 109
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=1.7e-11 Score=119.88 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=73.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC--------ceeeccC-ccCchhh-----------hh--hhHHHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNVG-CIPSKAL-----------LH--SSHMYH 101 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G--------G~~~~~~-~~p~~~l-----------~~--~~~~~~ 101 (477)
|||+||||||||+.||..|++.|.+|+|+||++.+| |.|.... ......+ .. ......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998886 6776443 1111111 01 111223
Q ss_pred HHHhhhhhCCccccc----cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCE-EEEEecCCceE
Q 011787 102 EAMHSFASHGVKFSS----VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGGNT 173 (477)
Q Consensus 102 ~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~-~~v~~~~g~~~ 173 (477)
+....+.+.|+.... ..++.+. . ...+...+...+++.++++..++ +..+ +.+. +.|.++++ .
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~---~----a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~ 151 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSD---K----ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--G 151 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT---------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--E
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCC---c----HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--c
Confidence 455667777875421 1111211 1 12233444556667799998774 4444 3444 77777555 7
Q ss_pred EEEecEEEEccCCCC
Q 011787 174 VVKGKNIIIATGSDV 188 (477)
Q Consensus 174 ~i~~d~lvlAtG~~~ 188 (477)
.+.+|+||||||+..
T Consensus 152 ~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 152 EYEADAVILATGGKS 166 (409)
T ss_dssp EEEESEEEE----SS
T ss_pred cccCCEEEEecCCCC
Confidence 999999999999764
No 110
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.24 E-value=3.7e-10 Score=115.73 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||||||+|.||++||..+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 458999999999999999999987 899999998776664
No 111
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.24 E-value=8.7e-11 Score=121.71 Aligned_cols=37 Identities=35% Similarity=0.553 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG 79 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~G 79 (477)
.+||+|||||.||++||..+++. |.+|+||||....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 58999999999999999999998 99999999976543
No 112
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.23 E-value=1.2e-10 Score=119.32 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
.++||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 468999999999999999999999999999999876654
No 113
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.3e-10 Score=118.36 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
|..++||+|||||.||++||+++++. .+|+|+||....+|
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 34568999999999999999999986 89999999765443
No 114
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.21 E-value=1.5e-08 Score=98.28 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCCCCCCccc-----cce
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFTAGLGLDK-----IGV 328 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~~~l~~~~-----~gl 328 (477)
..+.+.+.+.+++.|++++.+.+|.++..+++++...... .+....+.+|.+|+|+|.. +..-.-.++. .++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~--~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L 340 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR--NHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL 340 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec--CCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence 4567778888999999999999999998877776643321 1112589999999999977 3210000000 011
Q ss_pred ee---------------c----CCCCeecCCCCCC-----CCCCeEEecccCCCCCc------hhHHHHHHHHHHHHHc
Q 011787 329 ET---------------D----KMGRIPVNERFAT-----NIPGVYAIGDVIPGPML------AHKAEEDGVACVEFLA 377 (477)
Q Consensus 329 ~~---------------~----~~g~i~vd~~l~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~ 377 (477)
++ + ..-+|.+|+++|. ..+|+||+|-+.++... .-.|+..|-.||++|.
T Consensus 341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 11 0 1135789999883 38999999999876542 3467888888888773
No 115
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.21 E-value=1.9e-10 Score=117.04 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
++||||||+|.||++||.++++ |.+|+||||....||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 5899999999999999999976 89999999987766654
No 116
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.21 E-value=1.5e-10 Score=119.21 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=34.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCcee
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC 82 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~ 82 (477)
++||+|||||.||++||..+++. |.+|+|+||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 58999999977666533
No 117
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.20 E-value=1.4e-10 Score=118.68 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
...+||||||+|.||++||.++++ |.+|+||||....||..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCch
Confidence 346899999999999999999964 99999999987776643
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=1.1e-10 Score=120.11 Aligned_cols=39 Identities=38% Similarity=0.465 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
..+||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 458999999999999999999999999999999766554
No 119
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.18 E-value=3.1e-10 Score=113.14 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||||||+|.||++||..+. .|.+|+||||....||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999985 69999999998776654
No 120
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=1e-10 Score=120.76 Aligned_cols=39 Identities=33% Similarity=0.568 Sum_probs=34.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG 80 (477)
.++||+|||||.||++||.++++. |.+|+|+||....||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 358999999999999999999987 489999999766554
No 121
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.16 E-value=5.8e-09 Score=108.09 Aligned_cols=36 Identities=42% Similarity=0.581 Sum_probs=32.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999765543
No 122
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=7e-09 Score=107.41 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=35.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEecCCCCCce
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLG---LKTTCIEKRGALGGT 81 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g---~~V~lie~~~~~GG~ 81 (477)
..++||+|||||.||++||..+++.| .+|+|+||....||.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 34689999999999999999999998 899999997766543
No 123
>PLN02815 L-aspartate oxidase
Probab=99.15 E-value=9.9e-10 Score=112.98 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||||||+|.||++||+.+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3589999999999999999999999 99999998877663
No 124
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=5.3e-10 Score=115.56 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
.++||||||+|.||++||.++++.|.+|+|+||....||
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999776554
No 125
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=4.7e-09 Score=109.37 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G 79 (477)
.++||+|||||.||++||..+++.|.+|+|+||...+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46899999999999999999999999999999866553
No 126
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.11 E-value=1.8e-08 Score=103.78 Aligned_cols=34 Identities=41% Similarity=0.663 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHH----HCCCeEEEEecCCCC
Q 011787 45 DVVVIGGGPGGYVAAIKAA----QLGLKTTCIEKRGAL 78 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~----~~g~~V~lie~~~~~ 78 (477)
||||||||.||++||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999996543
No 127
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.10 E-value=7.1e-10 Score=111.93 Aligned_cols=142 Identities=24% Similarity=0.418 Sum_probs=78.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHH-------hhhhhCCc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGV 112 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~-------~~~~~~g~ 112 (477)
+.+|||+|||||+||+.||..+++.|.+|+|||++. .+|+. +|.|+..........+... ......++
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m----~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi 77 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM----SCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI 77 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc----CCccccccchhhHHHHHHHhcCCHHHHHHhhccC
Confidence 346999999999999999999999999999999973 56642 4444432222222111110 01111122
Q ss_pred cccccccC-hHHHHHHHHHH-HHHHHHHHHHHhhh-CCeEEEEeEEEEe--cCCEE-EEEecCCceEEEEecEEEEccCC
Q 011787 113 KFSSVEVD-LPAMMAQKDKA-VSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIATGS 186 (477)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~-~v~~~~g~~~~i~~d~lvlAtG~ 186 (477)
.+...... -+.......+. ...+...+...+.+ .+++++.+.+..+ +.+.+ .|.+.+| ..+.++.||+|||+
T Consensus 78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGT 155 (618)
T PRK05192 78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGT 155 (618)
T ss_pred ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCc
Confidence 11100000 00000000000 11223333344443 4889888877654 34443 3667777 78999999999997
Q ss_pred CC
Q 011787 187 DV 188 (477)
Q Consensus 187 ~~ 188 (477)
..
T Consensus 156 FL 157 (618)
T PRK05192 156 FL 157 (618)
T ss_pred ch
Confidence 43
No 128
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-08 Score=93.03 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----------Cccc
Q 011787 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-----------GLDK 325 (477)
Q Consensus 257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l-----------~~~~ 325 (477)
+.+.+...++..|..++.+-.|...+-.+++++-.... +.....+.+|..++|+|.--..... .++-
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr--n~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi 337 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR--NHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI 337 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec--ccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence 45566778888999999999999998888887643321 2233467899999999833221100 0110
Q ss_pred cceee----------cC----CCCeecCCCCCC-----CCCCeEEecccCCCCCc------hhHHHHHHHHHHHHHcC
Q 011787 326 IGVET----------DK----MGRIPVNERFAT-----NIPGVYAIGDVIPGPML------AHKAEEDGVACVEFLAG 378 (477)
Q Consensus 326 ~gl~~----------~~----~g~i~vd~~l~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~~ 378 (477)
..... .+ .-++.+|++++. .+.|+||||.+.++... .-.|...|..||+.|+.
T Consensus 338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 00000 00 124677888874 36789999999977542 23566667777777764
No 129
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.08 E-value=7.5e-10 Score=115.47 Aligned_cols=39 Identities=38% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
..+||||||||.||++||..+++.|.+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 468999999999999999999999999999999765543
No 130
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.05 E-value=8.1e-09 Score=106.95 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=30.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 46 vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
|||||+|.||++||..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999997734
No 131
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.00 E-value=8e-09 Score=95.19 Aligned_cols=135 Identities=24% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
.++||+||||||||++||++|++.|++|+|+|+...+||.....+. .+...+ .......+..+++++......
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v------~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVV------QEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccc------hHHHHHHHHHCCCCceeecCc
Confidence 3589999999999999999999999999999998888764322111 111111 112233345566654321110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCC-EE-EEEec------CC---ceEEEEecEEEEccCC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPS-EV-SVDTI------EG---GNTVVKGKNIIIATGS 186 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~-~~-~v~~~------~g---~~~~i~~d~lvlAtG~ 186 (477)
+. ... ...+...+.....+.+++++.++ +..+ +++ .+ .+... .+ +...++++.+|+|||.
T Consensus 98 ~~--~vd----~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 98 LY--VAD----SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred ce--ecc----HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 00 000 12233334455566788888773 3332 222 21 11111 11 2357899999999996
Q ss_pred CC
Q 011787 187 DV 188 (477)
Q Consensus 187 ~~ 188 (477)
..
T Consensus 172 ~a 173 (257)
T PRK04176 172 DA 173 (257)
T ss_pred Cc
Confidence 54
No 132
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.00 E-value=7.4e-09 Score=105.49 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGG 80 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG 80 (477)
..++||+|||+|.||++||.+++ +.+|+|+||... .||
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg 45 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGA 45 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCc
Confidence 34689999999999999999997 579999999765 444
No 133
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.96 E-value=9.2e-09 Score=94.44 Aligned_cols=40 Identities=43% Similarity=0.716 Sum_probs=36.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||+||||||||++||+.|++.|++|+|+||+..+||.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 3589999999999999999999999999999999888754
No 134
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.94 E-value=4.6e-09 Score=103.84 Aligned_cols=140 Identities=20% Similarity=0.281 Sum_probs=76.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhhhCC-ccccccccCh
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHG-VKFSSVEVDL 121 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~~~g-~~~~~~~~~~ 121 (477)
+||+||||||||++||..|++.|++|+|+|+....+..| .+++|...+.... ...... ....... +.+....+++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g-~~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC--GGAIPLCMVDEFA-LPRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhhHhhcc-CchhHHHhhhceeEEecCCceEEEe
Confidence 589999999999999999999999999999976655444 2344433221110 001111 0011000 0011111111
Q ss_pred HH------H-HHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec-----CCEEEEE--ecC-----CceEEEEecEEEE
Q 011787 122 PA------M-MAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-----PSEVSVD--TIE-----GGNTVVKGKNIII 182 (477)
Q Consensus 122 ~~------~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~v~--~~~-----g~~~~i~~d~lvl 182 (477)
.. . .... -..+.+.+.....+.+++++.+++..+. .....+. ..+ |+..+++++.||.
T Consensus 78 ~~~~~~~~~~~~v~---R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIg 154 (398)
T TIGR02028 78 GRTLKEHEYIGMLR---REVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIG 154 (398)
T ss_pred ccCCCCCCceeeee---HHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEE
Confidence 10 0 0000 1223333445566679999888765431 1223333 222 4346899999999
Q ss_pred ccCCCCC
Q 011787 183 ATGSDVK 189 (477)
Q Consensus 183 AtG~~~~ 189 (477)
|+|....
T Consensus 155 ADG~~S~ 161 (398)
T TIGR02028 155 ADGANSR 161 (398)
T ss_pred CCCcchH
Confidence 9998763
No 135
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.93 E-value=1.3e-07 Score=94.19 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.+....++.++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4556677888889999999999999987777766655421110134789999999999653
No 136
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=6.5e-08 Score=95.83 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+..+.+.+.+.+++.|++++++++|.+++..++++.+.+. ++ ++.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-----~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTT-----QG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEEC-----CC-EEEeCEEEECCCcch
Confidence 3567788888889999999999999999877776655543 33 799999999999765
No 137
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.90 E-value=7.5e-08 Score=94.03 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+..+...+.+.+++.|++++++++|+++..+++++. +.+. ++. +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~-----~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTS-----DGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEET-----TEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhccccccccccc-----ccc-cccceeEeccccccee
Confidence 357788888888999999999999999999988887 7765 555 9999999999975443
No 138
>PLN02463 lycopene beta cyclase
Probab=98.90 E-value=2.4e-08 Score=99.36 Aligned_cols=142 Identities=19% Similarity=0.169 Sum_probs=76.9
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116 (477)
Q Consensus 37 ~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~ 116 (477)
-+.....+||+||||||||+++|..|++.|++|+|+|+.+... +.+..+.-...+... ...+..........+....
T Consensus 22 ~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~w~~~l~~l-gl~~~l~~~w~~~~v~~~~ 98 (447)
T PLN02463 22 DPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGVWVDEFEAL-GLLDCLDTTWPGAVVYIDD 98 (447)
T ss_pred CCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccchHHHHHHHC-CcHHHHHhhCCCcEEEEeC
Confidence 3344567899999999999999999999999999999954321 111111100001000 0000000000000000000
Q ss_pred -----cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 117 -----VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 117 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
...++..+ . -..+.+.+.+.+...++++..+++..+. .+...|.+.+| .++++|.||.|+|....
T Consensus 99 ~~~~~~~~~y~~V--~----R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 99 GKKKDLDRPYGRV--N----RKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSRC 170 (447)
T ss_pred CCCccccCcceeE--E----HHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCcC
Confidence 00011000 0 1122333344445678988777666553 44567777777 68999999999998764
No 139
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.88 E-value=7.6e-08 Score=95.55 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
++.+.+.+.+.+. ++++++++.+++++.+++++.+++. +++++.+|.||.|.|..+..
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ-----QGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc-----CCCEEecCEEEECCCcChHH
Confidence 3455566666555 5999999999999877777777654 45689999999999987655
No 140
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.88 E-value=1.4e-08 Score=100.51 Aligned_cols=143 Identities=22% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHH-HHhhhhhCCc--cccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE-AMHSFASHGV--KFSSVE 118 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~-~~~~~~~~g~--~~~~~~ 118 (477)
.+|||+||||||||++||+.|++.|++|+|+||.+.+|......+.+....+......... ........-+ ......
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 4699999999999999999999999999999998888753222111111000000000000 0000000000 000000
Q ss_pred cChHH--HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEe--cCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 119 VDLPA--MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
+..+. .... ....+.+++....++.+++++.++. ..+ +.....+....+. .++.++.+|.|+|...
T Consensus 82 ~~~~~~~~y~v---~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIV---DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEE---EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence 11000 0000 0122344556667778999988753 222 2333333332222 6899999999999875
No 141
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.87 E-value=8.4e-08 Score=95.91 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
..+...+.+.+++.|+++++++.++++..+++++. +.+.+..++....+.++.||+|+|-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 46677788889999999999999999998877765 5655445566678999999999986554
No 142
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.86 E-value=1.6e-08 Score=100.09 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=74.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhhh-CCccccccc--cC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFAS-HGVKFSSVE--VD 120 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~~-~g~~~~~~~--~~ 120 (477)
||+||||||||+++|..|++.|++|+|||+++..|+.+. ++..+ ..+.... ..... ..... ..+...... .+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHT-YGVWD-DDLSDLG--LADCVEHVWPDVYEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcc-ccccH-hhhhhhc--hhhHHhhcCCCceEEecCCcchhcC
Confidence 799999999999999999999999999999877776431 11111 0110000 01110 00000 000000000 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec---CCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
.....-. -..+.+.+.+...+.+++++.+++..+. ...+.|.+.+| .+++++.||.|+|..+
T Consensus 77 ~~~~~i~----~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 77 TAYGSVD----STRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP 141 (388)
T ss_pred CceeEEc----HHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence 0000000 1223334444555668888877766553 33456666666 6899999999999876
No 143
>PLN02661 Putative thiazole synthesis
Probab=98.85 E-value=2.2e-08 Score=94.46 Aligned_cols=136 Identities=19% Similarity=0.284 Sum_probs=75.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCc-eeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG-~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
.++||+|||||+||++||+.|++. |++|+|||+...+|| .|....... ..+.... ..+.+.++|++++...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~-~~vv~~~-----a~e~LeElGV~fd~~d- 163 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFS-AMVVRKP-----AHLFLDELGVPYDEQE- 163 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccc-ccccccH-----HHHHHHHcCCCcccCC-
Confidence 368999999999999999999986 899999999888876 443211111 1111111 1223556677654320
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EE--ecCCEE-EEEe------cCC------ceEEEEecEEEEc
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KF--ISPSEV-SVDT------IEG------GNTVVKGKNIIIA 183 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~~-~v~~------~~g------~~~~i~~d~lvlA 183 (477)
++... ....... ........++.+++++.+.. .. .+.+.. .+.. .++ +...+.++++|+|
T Consensus 164 gy~vv-~ha~e~~---stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlA 239 (357)
T PLN02661 164 NYVVI-KHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSS 239 (357)
T ss_pred CeeEe-cchHHHH---HHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEc
Confidence 00000 0111111 11122334456888887743 22 222221 1111 111 1246899999999
Q ss_pred cCCCC
Q 011787 184 TGSDV 188 (477)
Q Consensus 184 tG~~~ 188 (477)
||...
T Consensus 240 TGh~g 244 (357)
T PLN02661 240 CGHDG 244 (357)
T ss_pred CCCCC
Confidence 99754
No 144
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.85 E-value=3.7e-08 Score=100.07 Aligned_cols=41 Identities=49% Similarity=0.634 Sum_probs=36.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
+..++||||||||.||+.||..+++.|.+|+|+||....+|
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 45579999999999999999999999999999999776553
No 145
>PRK10015 oxidoreductase; Provisional
Probab=98.85 E-value=1.4e-07 Score=94.09 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G 79 (477)
.+|||+||||||||++||+.|++.|++|+|+||.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 46999999999999999999999999999999976554
No 146
>PRK06847 hypothetical protein; Provisional
Probab=98.84 E-value=9.5e-08 Score=94.13 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
+++.+.+.+.+++.|+++++++++++++.+++.+.+.+. +++++.+|.||.|+|..+...
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vI~AdG~~s~~r 166 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS-----DGTTGRYDLVVGADGLYSKVR 166 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc-----CCCEEEcCEEEECcCCCcchh
Confidence 567777888888889999999999999887777777664 456899999999999887653
No 147
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.84 E-value=5.6e-08 Score=92.56 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=80.6
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM-----DGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~~-----~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
+++|||||+.|+++|..|++.|.+|+++++.+. + .|.+ +.++...+.+.+++.|+++++ .+|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 1222 257778888889999999998 8999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+++..++.+.+.+. ++.++.+|.+|+|+|..|+...
T Consensus 81 ~v~~~~~~~~v~~~-----~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRPFKVKTG-----DGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCeeEEEeC-----CCCEEEeCEEEECCCCCcccCC
Confidence 99887766666653 4468999999999999987654
No 148
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.84 E-value=6.7e-08 Score=97.94 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
..+...+.+.+++.|++++++++++++..+++++. +... ..++....+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~-~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAG-SAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEE-ccCCceEEEECCEEEECCCC
Confidence 45677788888899999999999999987666554 3332 12334567899999999984
No 149
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=6.6e-08 Score=95.56 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=54.1
Q ss_pred HHHHHHcCCcEEEEEeCCCcCCC--CCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787 230 GSVWARLGSEVTVVEFAADIVPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (477)
Q Consensus 230 a~~l~~~g~~Vtli~~~~~~~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~ 307 (477)
...+...|.+++... ..+++|. ...++.+.+.+.+++.|+++++++.|+++..+++.+.+++ ++..+.+|.
T Consensus 79 ~~~~~~~Gv~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~------~~~~i~ad~ 151 (400)
T TIGR00275 79 IDFFESLGLELKVEE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET------SGGEYEADK 151 (400)
T ss_pred HHHHHHcCCeeEEec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE------CCcEEEcCE
Confidence 334444555554432 2222222 2356777888888999999999999999977666655554 234789999
Q ss_pred EEEeecCCC
Q 011787 308 VLVSAGRTP 316 (477)
Q Consensus 308 vi~a~G~~p 316 (477)
||+|+|...
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999754
No 150
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.83 E-value=3.5e-07 Score=94.04 Aligned_cols=54 Identities=33% Similarity=0.621 Sum_probs=48.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhhhh
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLH 95 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l~~ 95 (477)
..++||||||+| +|++||..+++.|.+|+||||.+.+||++...+ |+|++.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~ 70 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLD 70 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHH
Confidence 347999999999 899999999999999999999989999999888 788776644
No 151
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.83 E-value=5.5e-08 Score=97.08 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
.++||+||||||||++||+.|++.|++|+|+||...+|.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 469999999999999999999999999999999876653
No 152
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.82 E-value=2.4e-07 Score=91.48 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+.+++.|++++.+++|++++.+++.+.+.+. + .++.+|.||+|+|...
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~-----~-~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTT-----K-GSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeC-----C-CEEEeCEEEEecCcch
Confidence 356677777788899999999999999877776666542 2 3799999999999653
No 153
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.6e-08 Score=83.49 Aligned_cols=40 Identities=40% Similarity=0.728 Sum_probs=36.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc-ee
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TC 82 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG-~~ 82 (477)
..||+||||||+||+||++|++.|++|+|+|++-.+|| .|
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 47999999999999999999999999999999888875 44
No 154
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.80 E-value=2.3e-07 Score=90.25 Aligned_cols=58 Identities=33% Similarity=0.537 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.++...+.+.+.++|+++.++++|+.|+..++++. +.+. +++.+ ++|+.||.|.|...
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~---~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTS---NGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEec---CCcEE-EEeeEEEECCchhH
Confidence 35677778888888999999999999999887533 4333 22222 99999999999654
No 155
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.78 E-value=6.4e-08 Score=96.77 Aligned_cols=38 Identities=39% Similarity=0.516 Sum_probs=34.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
+...++||+||||||||++||..|++.|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34457999999999999999999999999999999964
No 156
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.78 E-value=1.8e-08 Score=96.60 Aligned_cols=125 Identities=26% Similarity=0.457 Sum_probs=69.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEE-ecCCCCCceeeccCccCchhhhhhhHHHHHHHh-------hhhhCCcc---
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCI-EKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGVK--- 113 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~li-e~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-------~~~~~g~~--- 113 (477)
||+|||||+||+.||+.+++.|.+|+|+ .+.+.+|. ..|.|+..-............ .....++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~----~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE----MSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc----ccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 7999999999999999999999999999 33334433 345554322222222221110 01111221
Q ss_pred --------cccc--ccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEec--CCE-EEEEecCCceEEEEecE
Q 011787 114 --------FSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFIS--PSE-VSVDTIEGGNTVVKGKN 179 (477)
Q Consensus 114 --------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~--~~~-~~v~~~~g~~~~i~~d~ 179 (477)
...+ ..+-. .+...+.+.++. .+++++.+.+..+. .+. ..|.+.+| ..+.+|.
T Consensus 77 lN~skGpav~a~r~qvDr~-----------~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~ 143 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDRD-----------KYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADA 143 (392)
T ss_dssp ESTTS-GGCTEEEEEE-HH-----------HHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECE
T ss_pred ccccCCCCccchHhhccHH-----------HHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCE
Confidence 1111 12211 223333344444 68999998887653 333 45777888 7899999
Q ss_pred EEEccCC
Q 011787 180 IIIATGS 186 (477)
Q Consensus 180 lvlAtG~ 186 (477)
+|+|||+
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999998
No 157
>PRK06184 hypothetical protein; Provisional
Probab=98.77 E-value=2e-07 Score=95.32 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+.+.+.+.+.+.|+++.+++++++++.+++++.+++... ++++++.+|+||.|.|...
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGP--AGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeC--CCeEEEEeCEEEECCCCch
Confidence 3455677777888999999999999998888887776432 2457899999999999554
No 158
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.77 E-value=5.4e-08 Score=99.21 Aligned_cols=41 Identities=37% Similarity=0.644 Sum_probs=37.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
.++||||||+|.||++||+++++.|.+|+||||....||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46899999999999999999999999999999988888753
No 159
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.77 E-value=6.2e-08 Score=91.95 Aligned_cols=37 Identities=41% Similarity=0.561 Sum_probs=33.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
|||+|||||+||+++|+.|++.|.+|+|+|+....+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999876543
No 160
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.77 E-value=7.5e-09 Score=103.23 Aligned_cols=138 Identities=28% Similarity=0.355 Sum_probs=40.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhh----hhhHHHHHHHhhhhhCCccccccccC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL----HSSHMYHEAMHSFASHGVKFSSVEVD 120 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (477)
||||||||+||++||..+++.|++|+|||+.+.+||+....+..+..... .....+..+...+...+-........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999999999999999999987655543221111 12222333333322211100000011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEe--cCCE---EEEEecCCceEEEEecEEEEccCC
Q 011787 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFI--SPSE---VSVDTIEGGNTVVKGKNIIIATGS 186 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~---~~v~~~~g~~~~i~~d~lvlAtG~ 186 (477)
|........ ..+...+.+.+.+.+++++.++. ..+ +.++ +.+....| ..+++++.+|-|||-
T Consensus 81 ~~~~~~~~~---~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDP---EVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccc---cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 100001111 11223344555677899887743 222 2222 23333334 678999999999994
No 161
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.77 E-value=1.2e-07 Score=80.70 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEECCChHHHHHHHHHHHC-----CCeEEEEecCCCCC-c-eeeccC------ccCchhhhhhhHHH-HHHHhhhhhCCc
Q 011787 47 VVIGGGPGGYVAAIKAAQL-----GLKTTCIEKRGALG-G-TCLNVG------CIPSKALLHSSHMY-HEAMHSFASHGV 112 (477)
Q Consensus 47 vIIGgG~AGl~aA~~l~~~-----g~~V~lie~~~~~G-G-~~~~~~------~~p~~~l~~~~~~~-~~~~~~~~~~g~ 112 (477)
+|||+|++|++++.+|.+. ..+|+|+|+.+. | | .+.... +.|...+....... ..+..++...+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999987 468999999554 5 4 332211 01221111111000 112222222221
Q ss_pred ----cccccccChHHHHHHHHHHHHHHHHHHHHHhhhCC--eEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEcc
Q 011787 113 ----KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK--VTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIAT 184 (477)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAt 184 (477)
......+..+.++ .++++...+.+...+ ..+ |..+...+..++ .+...+.+.+| ..+.+|+|||||
T Consensus 80 ~~~~~~~~~~f~pR~~~---G~YL~~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~ 153 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALF---GEYLRDRFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLAT 153 (156)
T ss_pred ccccccccccCCCHHHH---HHHHHHHHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECC
Confidence 1111111111111 112222222222222 233 555666666553 44567778888 778999999999
Q ss_pred CC
Q 011787 185 GS 186 (477)
Q Consensus 185 G~ 186 (477)
|.
T Consensus 154 Gh 155 (156)
T PF13454_consen 154 GH 155 (156)
T ss_pred CC
Confidence 95
No 162
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.77 E-value=4.1e-07 Score=89.65 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+...+.+.+.+.|++++.+++|+++..+++.+.+... ++ .+.+|.||+|+|...
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTA-----DG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeC-----CC-EEEeeEEEEecCcch
Confidence 455556666777889999999999999887776666543 33 789999999999753
No 163
>PRK06834 hypothetical protein; Provisional
Probab=98.76 E-value=6.5e-08 Score=98.01 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=76.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCch--hhhhhhHHHHHHHhhhhhCC-ccccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSK--ALLHSSHMYHEAMHSFASHG-VKFSSVE 118 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~--~l~~~~~~~~~~~~~~~~~g-~~~~~~~ 118 (477)
..+||+||||||+|+++|+.|++.|.+|+|+|+.+.....-....++... .++........+........ ..+....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 45899999999999999999999999999999976421000011112211 11111111122111000000 0000000
Q ss_pred cChHHHH---HHH-HHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 119 VDLPAMM---AQK-DKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 119 ~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
+++..+. ... .-....+.+.+.+.+++.++++..++ +..+ +.+.+.+...+| .++++|+||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S 156 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCC
Confidence 1110000 000 00012233444555666788888773 3333 455677776666 5899999999999876
No 164
>PRK09126 hypothetical protein; Provisional
Probab=98.76 E-value=3.3e-07 Score=90.85 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHHHHHH-HhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 259 KQFQRSL-EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 259 ~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
+.+.+.+ +..|++++.++++++++.+++.+.+++. +++++.+|.||.|.|..+...
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLA-----NGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEc-----CCCEEEeCEEEEeCCCCchhh
Confidence 3344443 4569999999999999887777777664 456899999999999887653
No 165
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.76 E-value=3.5e-08 Score=85.33 Aligned_cols=39 Identities=44% Similarity=0.704 Sum_probs=32.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
++||+||||||||++||+.|++.|++|+++|++..+||-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg 55 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG 55 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 589999999999999999999999999999998888764
No 166
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.76 E-value=1.1e-07 Score=95.28 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCc---CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc--C--CeEE-EEEee-
Q 011787 224 YIGLEMGSVWARLGSEVTVVEFAADI---VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--G--DGVK-LTLEP- 294 (477)
Q Consensus 224 ~~g~e~a~~l~~~g~~Vtli~~~~~~---~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~--~~~~-v~~~~- 294 (477)
.++.|+...+.++=.++.-+.....+ -..-.+.+..-+.+.|+++||+|+++++|+++..+ + +.++ +.+..
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 68899988887662222111111111 01122578888999999999999999999999874 2 2232 44432
Q ss_pred cCCCceEEEEcCEEEEeecCCCCCC
Q 011787 295 AAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 295 ~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
.....-...+.|.||+++|.-....
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCcccc
Confidence 1111223467999999999654443
No 167
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.74 E-value=6.3e-08 Score=97.89 Aligned_cols=140 Identities=24% Similarity=0.357 Sum_probs=75.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-------hhhhhCCccccc
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGVKFSS 116 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-------~~~~~~g~~~~~ 116 (477)
|||+|||||+||+.+|..+++.|.+|+|+|++...+|.| +|.|+..-.......+.+. ......++.+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC---CccccccccccchhhhhhhcccchHHHHHHhhceehee
Confidence 699999999999999999999999999999975444432 3333322111111111100 000001111100
Q ss_pred cccCh-HHHHHHHHHH-HHHHHHHHHHHhhhC-CeEEEEeEEEEe--c-C-CEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 117 VEVDL-PAMMAQKDKA-VSNLTRGIEGLFKKN-KVTYVKGYGKFI--S-P-SEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 117 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~~~~~~--~-~-~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
...+. +.......+. ...+...+...+++. +++++.+.+..+ + . .-..|.+.+| ..+.++.||+|||...
T Consensus 78 ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 78 LNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL 154 (617)
T ss_pred cccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence 00000 0000000000 112333344444444 788888877654 2 2 3345677777 5899999999999864
No 168
>PRK07121 hypothetical protein; Validated
Probab=98.72 E-value=5.5e-07 Score=91.83 Aligned_cols=44 Identities=41% Similarity=0.575 Sum_probs=39.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
.++||||||+|.||++||+++++.|.+|+|+||....||.....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~s 62 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALS 62 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccc
Confidence 46899999999999999999999999999999988888765443
No 169
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.72 E-value=5.1e-07 Score=89.91 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.+.+.+.+++.|++++.++++.+++.+++++.+++. +++++.+|+||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA-----DGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCchh
Confidence 44556666777789999999999999888877777764 45689999999999987754
No 170
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.72 E-value=1.6e-07 Score=93.01 Aligned_cols=40 Identities=33% Similarity=0.570 Sum_probs=35.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
|++..+||+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4456789999999999999999999999999999997644
No 171
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.72 E-value=7.4e-07 Score=89.12 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+...+.+.+++.|++++++++|++++.+++++. ++. ++.++.+|.||+|+|...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t------~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT------GGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe------CCcEEeCCEEEECCCcch
Confidence 5666777788889999999999999987766654 332 234789999999999643
No 172
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.71 E-value=1.1e-07 Score=94.07 Aligned_cols=32 Identities=47% Similarity=0.725 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
|||+||||||||++||+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999996
No 173
>PLN02697 lycopene epsilon cyclase
Probab=98.70 E-value=1.8e-07 Score=94.58 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=73.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc-ccc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEV 119 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~-~~~ 119 (477)
...+||+||||||||+++|..|++.|++|+|||+...+...+ + +....+.... ......+......+.... ...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~---G-vW~~~l~~lg-l~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFKDLG-LEDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc---c-cchhHHHhcC-cHHHHHhhcCCcEEEecCCcee
Confidence 346899999999999999999999999999999864443221 1 1111110000 000000000000000000 000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEE-EEecCCceEEEEecEEEEccCCCC
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVS-VDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~-v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
......... .-..+.+.+.....+.+++++...+..+. .+... +...+| .++.++.||.|+|...
T Consensus 181 ~~~~~Yg~V--~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGRAYGRV--SRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred eccCcccEE--cHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence 000000000 01123333444455678888777776653 23333 344556 6799999999999866
No 174
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.69 E-value=6.9e-07 Score=89.28 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 257 IRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 257 ~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+.+.+.+.+.+. ++++++++++++++.+++.+.+++.+ +++..++++|+||.|.|..+..
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~--~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI--EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc--CCcceEEeeeEEEEeCCCCchh
Confidence 445566656554 79999999999998887777777652 2233579999999999987755
No 175
>PRK08013 oxidoreductase; Provisional
Probab=98.69 E-value=7.9e-07 Score=88.27 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.+.+.+.+++. |+++++++++++++.+++.+.+++. +++++.+|+||-|.|..+..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK-----DGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc-----CCCEEEeeEEEEeCCCCcHH
Confidence 4555666666664 8999999999999887778877765 45689999999999987755
No 176
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.69 E-value=1.5e-06 Score=89.40 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+...+.....++|++++++++|+++..+++++. +++.+..++++..+.+|.||.|+|...
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 45555666677888999999999999987766654 555443344456899999999999643
No 177
>PRK07190 hypothetical protein; Provisional
Probab=98.68 E-value=2.6e-07 Score=93.59 Aligned_cols=141 Identities=19% Similarity=0.253 Sum_probs=75.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC--ceeeccCccC-chhhhhhhHHHHHHHhh---hhhC----
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--GTCLNVGCIP-SKALLHSSHMYHEAMHS---FASH---- 110 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G--G~~~~~~~~p-~~~l~~~~~~~~~~~~~---~~~~---- 110 (477)
+..+||+||||||+|+++|+.|++.|.+|+||||.+... |.+. +..| +..++............ ....
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~--~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD--ALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccce--EeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 345899999999999999999999999999999976542 2211 0111 11111111111111110 0000
Q ss_pred -C--cc-----ccccc-cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEec
Q 011787 111 -G--VK-----FSSVE-VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGK 178 (477)
Q Consensus 111 -g--~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d 178 (477)
+ +. +.... .......... ...+...+.+.+.+.++++..+. +..+ +.+.+.+...+| .+++++
T Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~---q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g--~~v~a~ 155 (487)
T PRK07190 81 NGKFISRQSSWWEELEGCLHKHFLMLG---QSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNG--ERIQSR 155 (487)
T ss_pred CCceEeeccccCccCCcCCCCceEecC---HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCC--cEEEeC
Confidence 0 00 00000 0000000000 01233334455566789988773 3333 455566666666 589999
Q ss_pred EEEEccCCCC
Q 011787 179 NIIIATGSDV 188 (477)
Q Consensus 179 ~lvlAtG~~~ 188 (477)
+||.|.|.+.
T Consensus 156 ~vVgADG~~S 165 (487)
T PRK07190 156 YVIGADGSRS 165 (487)
T ss_pred EEEECCCCCH
Confidence 9999999875
No 178
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.68 E-value=2.7e-08 Score=71.14 Aligned_cols=38 Identities=37% Similarity=0.566 Sum_probs=34.3
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 48 IIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
|||||++|+++|+.|++.|.+|+|+|+++.+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999999976543
No 179
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.67 E-value=1.3e-07 Score=93.73 Aligned_cols=37 Identities=32% Similarity=0.545 Sum_probs=33.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
..++||+||||||+|+++|+.|++.|.+|+|+|+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3468999999999999999999999999999999754
No 180
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.66 E-value=2.5e-07 Score=96.21 Aligned_cols=147 Identities=23% Similarity=0.295 Sum_probs=83.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc-Ccc-------Cc--hh------------------h
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-------PS--KA------------------L 93 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-------p~--~~------------------l 93 (477)
.++||+|||||.||++||.++++.|.+|+|+||....+|.+... +.+ +. .. +
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999999999999999999999977665433221 111 10 00 0
Q ss_pred hhhhHHHHHHHhhhhhCCccccccc---cC---hH--HH-------HHH----HHHHHHHHHHHHHHHhhhCCeEEEEeE
Q 011787 94 LHSSHMYHEAMHSFASHGVKFSSVE---VD---LP--AM-------MAQ----KDKAVSNLTRGIEGLFKKNKVTYVKGY 154 (477)
Q Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~---~~--~~-------~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (477)
...........+++.++|+++.... +. +. .. ..+ .+.....+...+.....+.+++++.++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 0111112234456677888763210 00 00 00 000 000122344444455556789988774
Q ss_pred -EEE-e--cCCEEE-E---EecCCceEEEEecEEEEccCCCC
Q 011787 155 -GKF-I--SPSEVS-V---DTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 155 -~~~-~--~~~~~~-v---~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
+.. + +...+. + ...+|....+.++.||||||+-.
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 332 2 233321 2 23466667889999999999764
No 181
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.66 E-value=2.8e-06 Score=86.75 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+..+...+....++.|++++.+++|+++..+++.+.+.+.+.. ++..++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 4556666667778899999999999999887766666665432 4446799999999999643
No 182
>PRK12839 hypothetical protein; Provisional
Probab=98.66 E-value=1.1e-06 Score=90.58 Aligned_cols=54 Identities=39% Similarity=0.572 Sum_probs=46.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhh
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKAL 93 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l 93 (477)
+..++||+|||+|.+|++||+.|++.|.+|+|+||...+||++...+ |.|...+
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~ 61 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSL 61 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchh
Confidence 44579999999999999999999999999999999889999887766 4665544
No 183
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.66 E-value=1.3e-06 Score=90.09 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+.+.+.+.+.+ .|+++++++++++++.+++++.+++++. +++..++.+|+||-|.|...
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQRETVRARYVVGCDGANS 174 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC-CCCEEEEEEEEEEecCCCch
Confidence 455556666665 4899999999999998888888877532 33346899999999999654
No 184
>PRK06126 hypothetical protein; Provisional
Probab=98.66 E-value=7.9e-07 Score=92.01 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+...+.+.+++ .++++++++++++++.+++++.+++.+..++...++.+|+||.|.|..+
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 345555666654 5899999999999998888888777654445556899999999999654
No 185
>PRK07588 hypothetical protein; Provisional
Probab=98.65 E-value=5.9e-07 Score=88.99 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
+.+.+.+.+. .+++++++++|++++.+++++.++++ +++.+++|+||-|.|..+..-
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFE-----RGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEEC-----CCCEEEeCEEEECCCCCccch
Confidence 3344444443 37999999999999988888877765 456789999999999877654
No 186
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.65 E-value=7.7e-08 Score=94.32 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=74.3
Q ss_pred cEEEECCChHHHHHHHHH--HHCCCeEEEEecCCCC--CceeeccCccCchhhhhhhHHHHHH-HhhhhhCCcccccccc
Q 011787 45 DVVVIGGGPGGYVAAIKA--AQLGLKTTCIEKRGAL--GGTCLNVGCIPSKALLHSSHMYHEA-MHSFASHGVKFSSVEV 119 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l--~~~g~~V~lie~~~~~--GG~~~~~~~~p~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~ 119 (477)
||+||||||||+++|.+| ++.|.+|+|||++... ...+.+ |.....+.. +... .+.....-+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW--~~~~~~~~~----~~~~v~~~w~~~~v~~~~~~~ 74 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTW--CFWEKDLGP----LDSLVSHRWSGWRVYFPDGSR 74 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccc--ccccccccc----hHHHHheecCceEEEeCCCce
Confidence 899999999999999999 6679999999997766 343311 111111100 1111 1111111111111000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCC
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
.... ..+..=.-..+.+.+.+.+...++.++...+..++.. ...+.+.+| .+++++.||-|+|..+
T Consensus 75 ~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 75 ILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS 142 (374)
T ss_pred EEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence 0000 0000000112333344444456777888787776543 456778888 6899999999999554
No 187
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.64 E-value=1.5e-06 Score=87.77 Aligned_cols=62 Identities=27% Similarity=0.436 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+.+++.| ++++++++|++++.++++ +.+.+.+..++...++.++.||+|+|...
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 456777778888876 899999999999875553 55555422223334699999999999654
No 188
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.64 E-value=8e-07 Score=90.67 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+...+.+..++.|++++.+++|+++..+++.+.+++.+..+++..++.++.||.|+|...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 45555666677888999999999999987776666666543344456899999999999654
No 189
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=4.9e-07 Score=93.92 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
..+...+.+.+++.||++++++.++++..++ +++. +...+..++....+.++.||+|||-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4566677777778899999999999987654 4444 4433333445568999999999984
No 190
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.62 E-value=1.7e-06 Score=86.20 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=42.9
Q ss_pred HHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 259 ~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
..+.+.+.+ .|++++.++++++++.+++.+.+++. +++++.+|+||.|.|..+..
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD-----NGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC-----CCCEEEeCEEEEeCCCCChh
Confidence 344454544 47999999999999887777777765 45689999999999987654
No 191
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.62 E-value=1.4e-06 Score=90.22 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
.+.+.+.+.+++. ++++++++++++++.+++++.+++... ++..++.+|+||.|.|..+.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~--~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP--DGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC--CCcEEEEeCEEEECCCCCcH
Confidence 4445566666654 799999999999998888877766521 12247999999999996553
No 192
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.62 E-value=1.1e-06 Score=88.83 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+..+...+.+.+++.|++++++++|++++.++ +.+.+.+.+..++++.++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 35677788888888999999999999998754 3455554432333345799999999999654
No 193
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.61 E-value=2e-06 Score=86.34 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHH-hcCcEEEeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 255 GEIRKQFQRSLE-KQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 255 ~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
..+.+.+.+.+. ..|++++++++|+.++.. ++.+.+.+.....+...++.+|.||+|.|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 355666767775 458999999999999876 556666543212222236899999999997663
No 194
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.61 E-value=1.9e-06 Score=87.06 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
+..+...+.+.+++.|++++.++.|++++. ++.+.+++. + .++.+|.||+|+|..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~-----~-g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTP-----D-GQVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeC-----C-cEEECCEEEEccccc
Confidence 345667778888899999999999999975 334444432 3 369999999999854
No 195
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=8e-07 Score=92.20 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=35.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||||||+|.||++||.++++.|.+|+||||....+|.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4589999999999999999999999999999997655553
No 196
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.61 E-value=4.1e-06 Score=84.45 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHh----cC--cEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 GEIRKQFQRSLEK----QK--MKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ~~~~~~~~~~l~~----~g--v~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+...+.+.+++ .| ++++++++|++++..++ .+.+.+. + .++.+|.||+|+|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~-----~-G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTN-----R-GEIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC-----C-CEEEeCEEEECcChhH
Confidence 3566777777777 67 88999999999987744 4455542 3 3799999999999654
No 197
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.60 E-value=1.8e-06 Score=85.35 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
++...+.+.+.+.+ |+++.+++|+.++.+++.+.+++.. ++++++||+||-|-|.....
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~----dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF----DGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC----CCcEEecCEEEECCCCchHH
Confidence 56677777777665 9999999999999988888877752 44599999999999977654
No 198
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=4.6e-07 Score=94.51 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G 79 (477)
++||||||+|.||++||..+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5899999999999999999999999999999976554
No 199
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.60 E-value=1.8e-06 Score=85.44 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.+.+.+.+.+.| ++++.+++|++++.+++++.+++. +++++.+|.||.|.|.....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD-----DGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC-----CCCEEEeeEEEEeCCCCCHH
Confidence 45666777777777 999999999999887777777654 45679999999999987643
No 200
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.59 E-value=4.7e-07 Score=94.29 Aligned_cols=39 Identities=36% Similarity=0.516 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
.++||||||+|.||++||.++++.|.+|+||||....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 358999999999999999999999999999999766554
No 201
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.58 E-value=2.1e-06 Score=85.02 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.+.+.+.+++. |++++.+++++++..+++++.+++. ++.++.+|+||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA-----DGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC-----CCCEEEeCEEEEeCCCCchh
Confidence 3445556666665 9999999999999877777777654 44689999999999988754
No 202
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=8.7e-07 Score=91.78 Aligned_cols=39 Identities=33% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG 80 (477)
.++||||||+|.||++||.++++.|.+|+|+||....+|
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 358999999999999999999999999999999766654
No 203
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.57 E-value=1.4e-07 Score=88.29 Aligned_cols=48 Identities=44% Similarity=0.725 Sum_probs=41.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCceeeccCcc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCI 88 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~~~~~ 88 (477)
...+||+|||||||||+||.+|+++ +.+|.|+||...+||+.+.-.++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi 127 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI 127 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee
Confidence 3579999999999999999999875 57899999999999987766554
No 204
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.57 E-value=4.5e-07 Score=91.25 Aligned_cols=39 Identities=38% Similarity=0.602 Sum_probs=35.7
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceee
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCL 83 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~ 83 (477)
||||||+|.||++||.++++.| .+|+||||.+..||...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence 7999999999999999999999 99999999888776543
No 205
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.57 E-value=2.7e-06 Score=83.71 Aligned_cols=58 Identities=9% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
++.+.+.+.+++. +++++.+++++++..+++++.+.+. ++ ++.+|+||-|.|..+..-
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD-----DK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc-----CC-EEeeCEEEEeCCCCchhH
Confidence 5566666666665 4899999999999888888777763 33 899999999999887653
No 206
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.56 E-value=1.1e-06 Score=90.80 Aligned_cols=43 Identities=33% Similarity=0.604 Sum_probs=38.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--CCCceee
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCL 83 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--~~GG~~~ 83 (477)
..++||||||+|.||++||..+++.|.+|+||||.. ..||...
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 356899999999999999999999999999999988 6777653
No 207
>PRK11445 putative oxidoreductase; Provisional
Probab=98.55 E-value=8.6e-07 Score=86.32 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
++||+||||||||+++|..|++. ++|+|+|+.+..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 47999999999999999999999 999999997643
No 208
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.54 E-value=1.1e-06 Score=87.06 Aligned_cols=36 Identities=39% Similarity=0.528 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
++||+||||||||+++|+.|++.|.+|+|+|++...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 479999999999999999999999999999997654
No 209
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.54 E-value=1.1e-06 Score=84.33 Aligned_cols=44 Identities=30% Similarity=0.576 Sum_probs=40.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
....||+|||+|.+||+||..|.+.|++|+|+|.++++||.|..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 45689999999999999999999999999999999999997643
No 210
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.54 E-value=2.8e-06 Score=78.11 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=103.9
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------C----------------------------CCH
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------S----------------------------MDG 255 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~----------------------------~~~ 255 (477)
.-+++|||+|+.|+-+|..+++.|.+|.+++++..+.. . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 35799999999999999999999999999999865410 0 012
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC--eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCcccc
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~ 326 (477)
++.+.+.+...+.|++++.++.+.++..+++ ++. +.+... ...+...+.++.||.|+|.......+..+..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 3445566667778999999999999887665 333 333211 0113468999999999996654322112222
Q ss_pred ceeecC-----CCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcC
Q 011787 327 GVETDK-----MGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAG 378 (477)
Q Consensus 327 gl~~~~-----~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~ 378 (477)
++.... .+..+.+. +-+.-+|++|++|=.+ +.|...+ .+ ...|+.||+.|+.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 221111 11222221 1123489999999876 3443222 23 3468888887764
No 211
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=2.2e-06 Score=88.35 Aligned_cols=44 Identities=43% Similarity=0.690 Sum_probs=40.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (477)
++||+|||+|.||++||..+++.|.+|+||||....||++...+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~ 49 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceec
Confidence 68999999999999999999999999999999888898875554
No 212
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=4.4e-07 Score=90.13 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
|..+.-.......++|-.++..++|+.+..+++...+.+.+..++...++.++.||.|+|-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 345555666677888999999999999998887455888777777888999999999999543
No 213
>PRK08244 hypothetical protein; Provisional
Probab=98.53 E-value=5.2e-07 Score=92.14 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=33.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
++||+||||||+|+++|..|++.|.+|+||||.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 389999999999999999999999999999997643
No 214
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.52 E-value=5.6e-07 Score=80.35 Aligned_cols=98 Identities=29% Similarity=0.406 Sum_probs=68.2
Q ss_pred EEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcC--------------CC-C------------C---------------
Q 011787 218 VVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIV--------------PS-M------------D--------------- 254 (477)
Q Consensus 218 ~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~--------------~~-~------------~--------------- 254 (477)
+|||+|+.|+-+|..|.+.|.+ ++++++++.+. |. + .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 99999886542 00 0 0
Q ss_pred -HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC--CCCCCC
Q 011787 255 -GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR--TPFTAG 320 (477)
Q Consensus 255 -~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~--~p~~~~ 320 (477)
+++.+.+++..++.++++.++++|+++..++++..+++. ++.++.||.||+|+|. .|+...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~-----~~~~~~a~~VVlAtG~~~~p~~p~ 144 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR-----DGRTIRADRVVLATGHYSHPRIPD 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET-----TS-EEEEEEEEE---SSCSB---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE-----ecceeeeeeEEEeeeccCCCCccc
Confidence 245567778888889999999999999999888888875 4478999999999996 555443
No 215
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.52 E-value=8.8e-07 Score=98.68 Aligned_cols=43 Identities=42% Similarity=0.607 Sum_probs=38.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
+..+||||||+|.||++||..+++.|.+|+|+||....||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 3468999999999999999999999999999999888888653
No 216
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.50 E-value=2.6e-06 Score=84.59 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
++.+.+.+.+.+ .++++++++++++++.+++++.+++... ++++.+++|+||-|-|.....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~--~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRT--NSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeC--CCCcEEecCEEEECCCccHhH
Confidence 455666666655 4899999999999988777877776532 234679999999999987755
No 217
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.50 E-value=3.1e-06 Score=85.83 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=68.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+. |. . +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~~-----~-----------------------~-- 210 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL---------PG-----E-----------------------D-- 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC---------CC-----C-----------------------C--
Confidence 3689999999999999999999999999999854331 10 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+.+.+++.+++++.+ .+..++ .+.+.+...+|...++.+|.||+|+|..|..
T Consensus 211 ----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 211 ----------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 001111234456678998877 344443 4455666555544579999999999999853
No 218
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.50 E-value=8.4e-06 Score=81.22 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEecCCCCCc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQL-GL-KTTCIEKRGALGG 80 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~-~V~lie~~~~~GG 80 (477)
....+||+|||||.+|+++|++|++. |. +|+|+|++...+|
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 34579999999999999999999985 85 9999999653333
No 219
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.49 E-value=4.5e-06 Score=88.25 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
+..+...+.+.+++ |++++.+++|++++..++++.+.+. ++..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~-----~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFA-----GGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEEC-----CCcEEECCEEEECCCCCcc
Confidence 34677777778878 9999999999999877777666543 4456789999999997643
No 220
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.47 E-value=6e-06 Score=76.15 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=102.3
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------------------------------------C-CH
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------M-DG 255 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------~-~~ 255 (477)
...|+|||+|+.|+-+|..+++.|.+|.++++...+... . ..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987653210 0 12
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCccc--
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDK-- 325 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-- 325 (477)
++...+.+...+.|++++.++.+.++..+++ ++. +.+... ...+...+.++.||.|+|..........+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 3445566667778999999999999876554 433 332210 112346899999999999654332110110
Q ss_pred -cceeecCCCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcCC
Q 011787 326 -IGVETDKMGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAGK 379 (477)
Q Consensus 326 -~gl~~~~~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~~ 379 (477)
.+.........+.+. +-+--+|++|++|=.+ +.|...+ .+ ...|+.||+.|+.+
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 011111111222221 1112479999999877 3443222 23 34688888877643
No 221
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.46 E-value=8.4e-07 Score=87.07 Aligned_cols=96 Identities=22% Similarity=0.372 Sum_probs=66.6
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------------CC--------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------MD-------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------------~~-------------------------- 254 (477)
+|+|||||++|+-+|..+++.|.+|.++++++.+... .+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999999875310 00
Q ss_pred ---------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcC
Q 011787 255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEAD 306 (477)
Q Consensus 255 ---------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D 306 (477)
.++.+.+.+.+++.||+++++++|.+++.++++ ..+.+. ++..+.+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~-----~~~~~~a~ 156 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK-----NGGEYEAD 156 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET-----TTEEEEES
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc-----CcccccCC
Confidence 356667778889999999999999999987777 566663 55799999
Q ss_pred EEEEeecCCC
Q 011787 307 VVLVSAGRTP 316 (477)
Q Consensus 307 ~vi~a~G~~p 316 (477)
.||+|+|-..
T Consensus 157 ~vILAtGG~S 166 (409)
T PF03486_consen 157 AVILATGGKS 166 (409)
T ss_dssp EEEE----SS
T ss_pred EEEEecCCCC
Confidence 9999999654
No 222
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.45 E-value=8.3e-07 Score=87.65 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
.+||+||||||+|+++|+.|++.|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999999999999864
No 223
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.44 E-value=4.6e-06 Score=81.32 Aligned_cols=103 Identities=27% Similarity=0.462 Sum_probs=81.6
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-----------------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD----------------------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~----------------------------------------- 254 (477)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 589999999999999999999999999999876431100
Q ss_pred ----------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcC
Q 011787 255 ----------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD 306 (477)
Q Consensus 255 ----------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D 306 (477)
..+.+.+.+.+++.|+++.+++++..++.+++++.+.+....++...++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 3456667777788899999999999999888888887776556666789999
Q ss_pred EEEEeecCCCCC
Q 011787 307 VVLVSAGRTPFT 318 (477)
Q Consensus 307 ~vi~a~G~~p~~ 318 (477)
+||-|.|.....
T Consensus 163 lvVgADG~~S~v 174 (356)
T PF01494_consen 163 LVVGADGAHSKV 174 (356)
T ss_dssp EEEE-SGTT-HH
T ss_pred eeecccCcccch
Confidence 999999988754
No 224
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.44 E-value=4.5e-06 Score=83.71 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=80.5
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------------------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------ 251 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------ 251 (477)
.++|+|||+|++|+-+|..|++.|.+|+++++++.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58899999999999999999999999999998764311
Q ss_pred ---CCC---------------HHHHHHHHHHHHhcCcE--EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787 252 ---SMD---------------GEIRKQFQRSLEKQKMK--FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (477)
Q Consensus 252 ---~~~---------------~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a 311 (477)
..+ .++.+.+++..+..|+. +.++++|++++..++++.+++.+. .+...+..+|.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~-~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS-GGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC-CCceEEEEcCEEEEe
Confidence 000 34666677777778888 889999999988777777776531 112235789999999
Q ss_pred ec--CCCCCCC
Q 011787 312 AG--RTPFTAG 320 (477)
Q Consensus 312 ~G--~~p~~~~ 320 (477)
+| ..|+...
T Consensus 169 tG~~~~P~~P~ 179 (461)
T PLN02172 169 NGHYTEPNVAH 179 (461)
T ss_pred ccCCCCCcCCC
Confidence 99 5676543
No 225
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.43 E-value=7.5e-07 Score=88.65 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGA 77 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~ 77 (477)
++||+||||||+|+++|..|++.| .+|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 489999999999999999999995 99999999754
No 226
>PRK06185 hypothetical protein; Provisional
Probab=98.43 E-value=2.1e-05 Score=78.37 Aligned_cols=36 Identities=31% Similarity=0.672 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
..++||+|||||++|+++|..|++.|.+|+|+|+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 346899999999999999999999999999999964
No 227
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.43 E-value=6e-07 Score=87.57 Aligned_cols=35 Identities=40% Similarity=0.689 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+||+||||||||+++|..|++.|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
No 228
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.42 E-value=1.3e-05 Score=78.65 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=31.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
+||+|||||.+|+++|++|++.|.+|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999654
No 229
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.42 E-value=4.4e-06 Score=87.15 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
+..+...+.+..++.|++++.+++|+++..+ ++++. +.+.+..+++..++.+|.||+|+|..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 4567777888889999999999999998765 34443 45543333444478999999999955
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.42 E-value=4e-06 Score=85.87 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=80.5
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC--CCcC-----------C-CCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~~-----------~-~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
...+++|||||+.|+.+|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3578999999999999999999999999998631 1111 0 123567777888888899999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
.+++.+++...+++. ++..+.+|.+|+|+|..|...
T Consensus 291 ~~I~~~~~~~~v~~~-----~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 291 KKIETEDGLIVVTLE-----SGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCcCCC
Confidence 999877666666654 445899999999999987543
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.42 E-value=3.2e-06 Score=86.64 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC--CCc--------CC----CCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADI--------VP----SMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~--------~~----~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
..+++|||||+.|+.+|..+++.|.+|+++... ..+ ++ ...+++.+.+.+.+++.|+++++++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999753 111 01 1235777888889999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
++...++...+.+. ++..+.+|.+|+|+|.+|...
T Consensus 291 ~I~~~~~~~~V~~~-----~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 291 KLEPAAGLIEVELA-----NGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred EEEecCCeEEEEEC-----CCCEEEcCEEEECCCCCcCCC
Confidence 99887666666654 445799999999999988653
No 232
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.42 E-value=1.9e-06 Score=85.56 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
|+..+||+|||+|.+|+.+|..|.+.|++|+++|+++..||.+..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 455799999999999999999999999999999999999997653
No 233
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.41 E-value=8.4e-05 Score=77.20 Aligned_cols=44 Identities=43% Similarity=0.591 Sum_probs=40.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (477)
++||+|||+|++|++||..+++.|++|+||||...+||++...+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~ 59 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSA 59 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccC
Confidence 68999999999999999999999999999999888998776554
No 234
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.41 E-value=9.1e-07 Score=86.43 Aligned_cols=36 Identities=28% Similarity=0.632 Sum_probs=33.7
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787 45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG 80 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG 80 (477)
||+|||||+||+++|..|++. |++|+|+|+.+..+|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999887776
No 235
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.41 E-value=1.8e-06 Score=79.44 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
...+|.|||+|.+||+||+.|.++ ++|+|+|.+..+||...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 457899999999999999999987 89999999999999754
No 236
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=3.4e-07 Score=92.75 Aligned_cols=44 Identities=43% Similarity=0.577 Sum_probs=40.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
.++||||||||++||+||..|++.|++|+|+||+..+||.+...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 46899999999999999999999999999999999999976543
No 237
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.39 E-value=2e-06 Score=86.74 Aligned_cols=102 Identities=21% Similarity=0.340 Sum_probs=74.4
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCc------CCCC-----C--HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI------VPSM-----D--GEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~------~~~~-----~--~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
++++|||+|+.|+.+|..|++.+. +|+++++++.+ ++.+ + .+......+.+++.|++++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 379999999999999999998764 89999998763 1111 1 1222233456778899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEE--cCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILE--ADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~--~D~vi~a~G~~p~~~~ 320 (477)
+++.+++.+.+.- .. ++..++ +|.+|+|+|.+|+...
T Consensus 81 ~id~~~~~v~~~~--~~--~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVKN--LK--TGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEEE--CC--CCCEEEecCCEEEECCCCCCCCCC
Confidence 9987776655542 11 233455 9999999999987653
No 238
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.39 E-value=9.5e-06 Score=81.60 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=65.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||++|+.+|..|++.|.+|+|+++.+.+.. . ...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~-----~~~------------------------ 198 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP---------R-----EEP------------------------ 198 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC---------C-----CCH------------------------
Confidence 35899999999999999999999999999998543311 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
.+.......+++.+++++.+ .+..++. ..+.+.. ++ .++.+|.+|+|+|.+|.
T Consensus 199 -----------~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g--~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 -----------SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-ED--ETYRFDALLYATGRKPN 254 (438)
T ss_pred -----------HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CC--eEEEcCEEEEeeCCCCC
Confidence 01111234556678988876 4455543 3344433 44 57999999999999985
No 239
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.38 E-value=1.2e-06 Score=85.79 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=37.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~ 84 (477)
++++|||||+|||+||++|++.+ .+|+|+|+.+++||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 36999999999999999999998 999999999999996543
No 240
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=4.6e-06 Score=84.63 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=67.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||++|+.+|..|++.|.+|+|+++.+.+. |. . +
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------~~-----~-----------------------~-- 220 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------PT-----E-----------------------D-- 220 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------Cc-----C-----------------------C--
Confidence 3689999999999999999999999999999854321 10 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEE-EEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEV-SVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~-~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+. +..++ .+.. .+...+|+..++.+|.+|+|+|.+|..
T Consensus 221 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 221 ----------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ----------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0011122345566789988774 44443 3333 333456655679999999999999863
No 241
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.38 E-value=1.6e-06 Score=86.02 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC---CCeEEEEecC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKR 75 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~ 75 (477)
.++||+||||||||+++|+.|++. |.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999998 9999999995
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.37 E-value=2.7e-06 Score=84.26 Aligned_cols=99 Identities=10% Similarity=0.162 Sum_probs=72.0
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCc---CCCCCHHHH---------HHHHHHHHhcCcEEEeCceEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI---VPSMDGEIR---------KQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~---~~~~~~~~~---------~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.++++|||||+.|+.+|..|++.+. +|+++.+.+.. .+.+.+.+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4679999999999999999999876 78999876543 122222211 001244667899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
.++.++.. +.+. ++.++.+|.+|+|||.+|+..
T Consensus 83 ~id~~~~~--v~~~-----~g~~~~yd~LViATGs~~~~~ 115 (396)
T PRK09754 83 TLGRDTRE--LVLT-----NGESWHWDQLFIATGAAARPL 115 (396)
T ss_pred EEECCCCE--EEEC-----CCCEEEcCEEEEccCCCCCCC
Confidence 99766543 3333 456899999999999998653
No 243
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.37 E-value=2.4e-06 Score=84.66 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
++||+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999764
No 244
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=4.5e-07 Score=90.97 Aligned_cols=44 Identities=32% Similarity=0.565 Sum_probs=40.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
.....++|+|||||+|||+||.+|.+.|++|+|+|.++++||..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 34556899999999999999999999999999999999999864
No 245
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.37 E-value=2.3e-06 Score=84.54 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
.+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999764
No 246
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=5.1e-07 Score=88.01 Aligned_cols=143 Identities=25% Similarity=0.372 Sum_probs=76.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchh------hhhhhHHHHH-HHhhhhhCCcc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA------LLHSSHMYHE-AMHSFASHGVK 113 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~------l~~~~~~~~~-~~~~~~~~g~~ 113 (477)
+..|||+|||||+||+.||...+|.|.+++|+--+-..=|. -+|-|+-- +........- +-......++.
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~---msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ 78 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE---MSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQ 78 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee---cccccccCCcccceeEEeehhccchHHHhhhhcCCc
Confidence 34599999999999999999999999999998765332221 23333210 1110000000 00111122333
Q ss_pred ccccccCh-HHHHHHHHHHHH-HHHHHHHH-HhhhCCeEEEEeEEEEe--cCC--EEEEEecCCceEEEEecEEEEccCC
Q 011787 114 FSSVEVDL-PAMMAQKDKAVS-NLTRGIEG-LFKKNKVTYVKGYGKFI--SPS--EVSVDTIEGGNTVVKGKNIIIATGS 186 (477)
Q Consensus 114 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~--~~~--~~~v~~~~g~~~~i~~d~lvlAtG~ 186 (477)
+.-++..- +.......+..+ .+...... .....+++++++.+..+ ..+ -..|.+.+| ..+.++.|||+||+
T Consensus 79 ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--~~~~a~aVVlTTGT 156 (621)
T COG0445 79 FRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--PEFHAKAVVLTTGT 156 (621)
T ss_pred hhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--CeeecCEEEEeecc
Confidence 22111110 011111111111 12222222 33345888888877553 233 356778888 89999999999997
Q ss_pred CC
Q 011787 187 DV 188 (477)
Q Consensus 187 ~~ 188 (477)
--
T Consensus 157 FL 158 (621)
T COG0445 157 FL 158 (621)
T ss_pred cc
Confidence 43
No 247
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.35 E-value=1.7e-06 Score=85.53 Aligned_cols=33 Identities=36% Similarity=0.662 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEecCCC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGA 77 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~ 77 (477)
||+||||||||+++|..|++.| ++|+|+|+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999999 99999999654
No 248
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.5e-05 Score=82.55 Aligned_cols=40 Identities=48% Similarity=0.758 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (477)
.++||||||+|.||++||+.+++.|.+|+|+||....||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3689999999999999999999999999999998888874
No 249
>PRK06996 hypothetical protein; Provisional
Probab=98.34 E-value=2.3e-06 Score=84.96 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCC----CeEEEEecCC
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLG----LKTTCIEKRG 76 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g----~~V~lie~~~ 76 (477)
|.+..+||+||||||+|+++|..|++.| ++|+|+|+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4455689999999999999999999986 5799999964
No 250
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.33 E-value=1.7e-05 Score=79.71 Aligned_cols=59 Identities=15% Similarity=0.344 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhc---CcEEEeCceEEEEEEc-------CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 256 EIRKQFQRSLEKQ---KMKFMLKTKVVGVDLS-------GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 256 ~~~~~~~~~l~~~---gv~~~~~~~v~~i~~~-------~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
.+...+.+.+++. +++++.++++.+++.+ ++++.+++. +++++.+|+||-|-|.....-
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~-----~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLS-----DGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEc-----CCCEEEeeEEEEecCCCChhH
Confidence 4445556666665 4999999999999642 345666664 457899999999999887653
No 251
>PRK07236 hypothetical protein; Provisional
Probab=98.33 E-value=3.1e-06 Score=83.70 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
..++|+|||||++|+++|..|++.|.+|+|+||.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35899999999999999999999999999999975
No 252
>PRK06753 hypothetical protein; Provisional
Probab=98.32 E-value=1.9e-06 Score=84.89 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+||+|||||+||+++|..|++.|++|+|+|+++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999997754
No 253
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.32 E-value=3.7e-05 Score=80.44 Aligned_cols=37 Identities=30% Similarity=0.592 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG 76 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~ 76 (477)
|..++||+||||||+|+++|+.|++. |.+|+|||+.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 45578999999999999999999995 99999999964
No 254
>PLN02985 squalene monooxygenase
Probab=98.31 E-value=4.1e-06 Score=85.33 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
...+||+|||||++|+++|..|++.|.+|+|+||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 446899999999999999999999999999999964
No 255
>PRK07208 hypothetical protein; Provisional
Probab=98.31 E-value=8.2e-07 Score=90.48 Aligned_cols=45 Identities=31% Similarity=0.560 Sum_probs=41.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
|+.++||+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 456789999999999999999999999999999999999997643
No 256
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.28 E-value=8.3e-06 Score=81.88 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--C-CCCHH-------HHHHH----HHHHHhcCcEEEeCceE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P-SMDGE-------IRKQF----QRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~-~~~~~-------~~~~~----~~~l~~~gv~~~~~~~v 278 (477)
++|+|||||+.|+.+|..|++. +.+|+++++.+.+. + .++.- ..+.+ .+..++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999877 56899999987531 1 11110 01111 23335679999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
.+|+.+++.+.+.. ...++..++++|.+|+|||.+|+...
T Consensus 82 ~~Id~~~~~v~~~~--~~~~~~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDERQTVTVLN--RKTNEQFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECCCCEEEEEE--CCCCcEEeeecCEEEECCCCCCCCCC
Confidence 99987776555542 22223345789999999999997654
No 257
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.27 E-value=1.2e-05 Score=76.25 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=77.5
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------------------C-
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------S- 252 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------~- 252 (477)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998864210 0
Q ss_pred ------C-CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 253 ------M-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 253 ------~-~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
+ ...+.+.+.+.+++.|++++.+++++++..+++++.+.+.. ++.++++|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG----GEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC----ccEEEEeCEEEECCCcchH
Confidence 0 12455667777788899999999999998877777666542 3468999999999998754
No 258
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.27 E-value=2.7e-05 Score=77.02 Aligned_cols=39 Identities=44% Similarity=0.481 Sum_probs=34.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G 79 (477)
+.++||+|||||.+|+++|++|++.|.+|+++|++...+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 346899999999999999999999999999999966544
No 259
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.26 E-value=5.7e-05 Score=73.13 Aligned_cols=97 Identities=28% Similarity=0.463 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceee-cC
Q 011787 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET-DK 332 (477)
Q Consensus 256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~-~~ 332 (477)
.+.+.+.+.+.+. |++++++++|++|+..+++ ..+.+.+..+++..++.++.|++..|-..-.- +++.|++- ..
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L---Lqksgi~e~~g 258 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL---LQKSGIPEGKG 258 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH---HHHcCChhhcc
Confidence 5666677777777 9999999999999988665 77888777777888999999999988654332 66677642 22
Q ss_pred CCCeecC-CCCCCCCC--------CeEEeccc
Q 011787 333 MGRIPVN-ERFATNIP--------GVYAIGDV 355 (477)
Q Consensus 333 ~g~i~vd-~~l~t~~~--------~vya~GD~ 355 (477)
-|+.+|. .++.+..| -||..-++
T Consensus 259 yggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 259 YGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred cCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 3445554 34565544 36765544
No 260
>PRK07236 hypothetical protein; Provisional
Probab=98.25 E-value=7.7e-06 Score=80.86 Aligned_cols=100 Identities=23% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC------CCHHHHHHHH-------------------------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQFQ------------------------- 262 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~------------------------- 262 (477)
..+|+|||||+.|+.+|..|++.|.+|+++++.+...+. +.+...+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 478999999999999999999999999999988754221 2232222222
Q ss_pred ------------------HHHHh--cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 263 ------------------RSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 263 ------------------~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+.|.+ .++.++.++++++++.+++++.+++. +++++.+|+||.|-|..+..
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA-----DGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCchH
Confidence 11111 13568889999999888888887775 45689999999999987755
No 261
>PRK06834 hypothetical protein; Provisional
Probab=98.25 E-value=1.6e-05 Score=80.63 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=77.1
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---C---CCC----------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---P---SMD---------------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~---~~~---------------------------------- 254 (477)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... + .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999875421 0 000
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 255 ----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 255 ----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
..+.+.+.+.+++.|+++++++++++++.+++++.+++. ++.++.+|+||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~-----~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS-----DGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCCCc
Confidence 123334455667779999999999999988888877764 34589999999999987754
No 262
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.25 E-value=1.4e-06 Score=84.35 Aligned_cols=43 Identities=35% Similarity=0.584 Sum_probs=39.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
++|++|||||+||+++|.+|++.|.+|+|+|+++.+||.|...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 3799999999999999999999999999999999999987653
No 263
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.24 E-value=7.6e-06 Score=81.79 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--CCC---------CHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--PSM---------DGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~ 282 (477)
.++|+|||||+.|+.+|..|.+.+.+|++|++++.+. |.+ ..++...+.+.++..+++++ ..+|++|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYL-RAVVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEE-EEEEEEEE
Confidence 4689999999999999999876678999999887652 111 12233334556667788877 56899998
Q ss_pred EcCCeEEEEEeecC---CCceEEEEcCEEEEeecCCCCCCC
Q 011787 283 LSGDGVKLTLEPAA---GGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 283 ~~~~~~~v~~~~~~---~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
.+++.+.+...... +.++.++++|.+|+|+|..|+...
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 87777666332110 135568999999999999987543
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.22 E-value=2.2e-05 Score=58.36 Aligned_cols=34 Identities=47% Similarity=0.537 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+++|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999996654
No 265
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.21 E-value=2.8e-06 Score=75.69 Aligned_cols=105 Identities=24% Similarity=0.402 Sum_probs=74.7
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---CCCC-----------HHHH--H--HHHHHHHhcCcEEEeCce
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PSMD-----------GEIR--K--QFQRSLEKQKMKFMLKTK 277 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~~~-----------~~~~--~--~~~~~l~~~gv~~~~~~~ 277 (477)
+|+|||||+.|+.+|..|++.+.+++++++.+... ..+. .... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997665321 0000 0011 1 344455678999999999
Q ss_pred EEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 278 VVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 278 v~~i~~~~~~~~---v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+.+++...+.+. +.+.....+++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 999988777431 1111112346789999999999998887654
No 266
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=2.1e-05 Score=79.90 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=66.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||+|+.|+.+|..|++.|.+|+|+++.+.+... . +
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------~-------------------------------d--- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------A-------------------------------D--- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------C-------------------------------C---
Confidence 68999999999999999999999999999985433100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecC--CceEEEEecEEEEccCCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE--GGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~--g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+.......+++.+++++.+ .+..++ ...+.+...+ |+...+.+|.|++|+|.+|..
T Consensus 224 ---------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 224 ---------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred ---------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 001111223455678888876 444443 3344454332 444679999999999999863
No 267
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.17 E-value=7.6e-06 Score=80.24 Aligned_cols=97 Identities=25% Similarity=0.381 Sum_probs=71.2
Q ss_pred eeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcC--CCCC---------HHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 216 KLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIV--PSMD---------GEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~--~~~~---------~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
+|+|||||+.|+.+|..+.+. +.+|+++++++... +.++ .++...+.+.+++.|++++.+ +|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 57899999887641 1111 223334456677789999864 89999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+.+++. +.+. +++++.+|.+|+|+|..|+...
T Consensus 80 d~~~~~--V~~~-----~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRRK--VLLA-----NRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccCE--EEEC-----CCCcccccEEEEccCCCCCCCC
Confidence 776654 3333 4567999999999999997654
No 268
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.17 E-value=1.6e-05 Score=79.70 Aligned_cols=58 Identities=26% Similarity=0.461 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
..+.+.+.+...+.||+++.++ |..+..++++. .+++. +++++++|.+|-|+|++...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~-----~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD-----DGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET-----TSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC-----CCCEEEEeEEEECCCccchh
Confidence 3566777888888999999874 77776665543 34443 56899999999999987654
No 269
>PRK05868 hypothetical protein; Validated
Probab=98.17 E-value=1.1e-05 Score=79.09 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+.||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 358999999999999999999999999999997654
No 270
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.17 E-value=2.4e-05 Score=77.49 Aligned_cols=100 Identities=21% Similarity=0.344 Sum_probs=77.1
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-----C-----CCC-----------------------------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----P-----SMD----------------------------- 254 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-----~-----~~~----------------------------- 254 (477)
..+|+|||||+.|+-+|..|++.|.+|+++++.+..- + .+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 3579999999999999999999999999999864210 0 000
Q ss_pred ---------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787 255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (477)
Q Consensus 255 ---------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~ 307 (477)
..+.+.+.+.+++.|++++.++++++++.+++++.+++. ++.++.+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~ 160 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD-----DGRRLEAAL 160 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC-----CCCEEEeCE
Confidence 123344555667789999999999999888777777664 446899999
Q ss_pred EEEeecCCCCC
Q 011787 308 VLVSAGRTPFT 318 (477)
Q Consensus 308 vi~a~G~~p~~ 318 (477)
||.|.|..+..
T Consensus 161 vV~AdG~~S~v 171 (392)
T PRK08773 161 AIAADGAASTL 171 (392)
T ss_pred EEEecCCCchH
Confidence 99999998864
No 271
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.16 E-value=2.4e-05 Score=74.23 Aligned_cols=97 Identities=25% Similarity=0.351 Sum_probs=74.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhh
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQL--------------GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS 109 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~--------------g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~ 109 (477)
-.+|||||||.|...|.+|+.. ..+|+++|..+.+ -..+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------L~mF--------- 271 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------LNMF--------- 271 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------------HHHH---------
Confidence 5799999999999999999853 3578888873211 0000
Q ss_pred CCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 110 HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
-+.+....++.+.+.++++..+ .+..+.+..+.+.+.+|+..++.|--||=|||..+
T Consensus 272 ----------------------dkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 272 ----------------------DKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred ----------------------HHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCC
Confidence 1223444567788889999998 46778999999998899889999999999999887
Q ss_pred C
Q 011787 189 K 189 (477)
Q Consensus 189 ~ 189 (477)
+
T Consensus 330 r 330 (491)
T KOG2495|consen 330 R 330 (491)
T ss_pred c
Confidence 5
No 272
>PRK08244 hypothetical protein; Provisional
Probab=98.16 E-value=3.2e-05 Score=79.01 Aligned_cols=100 Identities=24% Similarity=0.403 Sum_probs=77.0
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CC-----------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD----------------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~----------------------------------- 254 (477)
..|+|||+|+.|+-+|..|++.|.+|+++++.+...+. +.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999987643100 00
Q ss_pred -----------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 -----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 -----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+.+++.|++++.++++++++.+++++.+++.+. ++ ..++.+|+||.|.|..+
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGP-DG-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeC-Cc-cEEEEeCEEEECCCCCh
Confidence 12344555666778999999999999988888887776531 11 35799999999999775
No 273
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.13 E-value=1.1e-05 Score=80.57 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG 79 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~G 79 (477)
.+|+|||||+||+++|..|++.| .+|+|+||.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 36999999999999999999998 5999999977653
No 274
>PLN02568 polyamine oxidase
Probab=98.13 E-value=3.5e-06 Score=86.06 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=40.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEecCCCCCceeec
Q 011787 39 SASDENDVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g-----~~V~lie~~~~~GG~~~~ 84 (477)
||+...||+|||||+||++||..|++.| ++|+|+|+++.+||.+..
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3555689999999999999999999887 899999999999998654
No 275
>PRK10262 thioredoxin reductase; Provisional
Probab=98.13 E-value=5.3e-05 Score=72.87 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=72.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC---c--------CCC-----CCHHHHHHHHHHHHhcCcEEEeCc
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPS-----MDGEIRKQFQRSLEKQKMKFMLKT 276 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~-----~~~~~~~~~~~~l~~~gv~~~~~~ 276 (477)
..++++|||+|+.|+.+|..+.+.|.++++++.... + +|. ..+++.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 357899999999999999999999999998864321 1 111 11345666677777777877664
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
.+..++..++.+.+... ...+.+|.||+|+|..|+...
T Consensus 84 ~v~~v~~~~~~~~v~~~------~~~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 84 HINKVDLQNRPFRLTGD------SGEYTCDALIIATGASARYLG 121 (321)
T ss_pred EEEEEEecCCeEEEEec------CCEEEECEEEECCCCCCCCCC
Confidence 56677766665555431 236899999999999987543
No 276
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.13 E-value=5.5e-05 Score=65.47 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC-------------------------------H
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G 255 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~-------------------------------~ 255 (477)
-..|+|+|+|++|+.+|..|++.|.+|.+++++-.+.. .|+ .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 45799999999999999999999999999999876521 111 1
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCccc--
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDK-- 325 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-- 325 (477)
++...+....-+.|.+++....|..+-..++ ++. +.+... .--+...++++.|+-+||.....-.+..+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2333333333456899998999988766655 444 332210 011446889999999999665432211111
Q ss_pred -cceeecCCCCeecC--C-----CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcC
Q 011787 326 -IGVETDKMGRIPVN--E-----RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAG 378 (477)
Q Consensus 326 -~gl~~~~~g~i~vd--~-----~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~ 378 (477)
.++++......+.+ + +-+.-.||+|++|=.+ +.|...+ .+ ...|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 12222222223322 1 1233589999999766 3343222 23 3467888877754
No 277
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.12 E-value=1.3e-05 Score=77.53 Aligned_cols=99 Identities=25% Similarity=0.397 Sum_probs=78.0
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcC--CCC---------CHHHHHHHHHHHHhcC-cEEEeCceEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--PSM---------DGEIRKQFQRSLEKQK-MKFMLKTKVV 279 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~g-v~~~~~~~v~ 279 (477)
.++++|+|||+-|+.++..|.+.- .+||++++++..+ |.+ +.++...+.+.+++.+ +++. ..+|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFV-QGEVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEE-EEEEE
Confidence 578999999999999999998874 8899999988762 211 2445556777888555 8887 46899
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+|+.++..+.+. ++..+++|.+|+++|..++...
T Consensus 82 ~ID~~~k~V~~~-------~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 82 DIDRDAKKVTLA-------DLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEcccCCEEEeC-------CCccccccEEEEecCCcCCcCC
Confidence 998877766654 4578999999999999998865
No 278
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.12 E-value=3.4e-05 Score=76.76 Aligned_cols=98 Identities=23% Similarity=0.383 Sum_probs=75.5
Q ss_pred eeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCCC-----------------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVPS----------------------------------------- 252 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~----------------------------------------- 252 (477)
+|+|||||+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999986431000
Q ss_pred ---------C-----------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcC
Q 011787 253 ---------M-----------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD 306 (477)
Q Consensus 253 ---------~-----------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D 306 (477)
+ ...+.+.+.+.+.+.|++++.+++|++++.+++.+.+++. ++.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad 157 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS-----DGSVLEAR 157 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC-----CCCEEEeC
Confidence 0 0123445556667779999999999999888777777764 45689999
Q ss_pred EEEEeecCCCCC
Q 011787 307 VVLVSAGRTPFT 318 (477)
Q Consensus 307 ~vi~a~G~~p~~ 318 (477)
.||.|.|..+..
T Consensus 158 ~vI~AdG~~S~v 169 (403)
T PRK07333 158 LLVAADGARSKL 169 (403)
T ss_pred EEEEcCCCChHH
Confidence 999999987754
No 279
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.12 E-value=3.8e-05 Score=73.67 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=60.9
Q ss_pred HHHcCCcEEEEE-eCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEE
Q 011787 233 WARLGSEVTVVE-FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLV 310 (477)
Q Consensus 233 l~~~g~~Vtli~-~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~ 310 (477)
+...|+...++. +.+++....-+.+.+.+.+.+++.|++++++++|.+++..++.+. +.++ ++.++++|.||+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-----~g~~i~~~~vvl 224 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLT-----KGEEIEADYVVL 224 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEcc-----CCcEEecCEEEE
Confidence 344455554443 334444455678889999999999999999999999988777543 4443 678999999999
Q ss_pred eecCCCCCC
Q 011787 311 SAGRTPFTA 319 (477)
Q Consensus 311 a~G~~p~~~ 319 (477)
|+|+....+
T Consensus 225 A~Grsg~dw 233 (486)
T COG2509 225 APGRSGRDW 233 (486)
T ss_pred ccCcchHHH
Confidence 999876543
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=1.4e-05 Score=85.77 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=72.9
Q ss_pred CeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcC--C-CCC--------HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV--P-SMD--------GEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~--~-~~~--------~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
++|+|||+|+.|+.+|..|.+. +.+||++.+.+.+. + .+. .++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 36899999887642 1 111 1222223456778899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
.++.+.. .+.+. ++..+.+|.+|+|||..|+...
T Consensus 84 ~Id~~~~--~V~~~-----~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQEK--VIHSS-----AGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCCc--EEEEC-----CCcEEECCEEEECCCCCcCCCC
Confidence 9976543 33332 4568999999999999987654
No 281
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.12 E-value=3.1e-05 Score=71.24 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
|....|++|||+|.-|+++|++|++.|.++.++|+.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 44568999999999999999999999999999999553
No 282
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.12 E-value=3.2e-05 Score=76.17 Aligned_cols=98 Identities=14% Similarity=0.284 Sum_probs=71.2
Q ss_pred CeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCc---CCCCC---------HHHHH-HHHHHHHhcCcEEEeCceEE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADI---VPSMD---------GEIRK-QFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~---~~~~~---------~~~~~-~~~~~l~~~gv~~~~~~~v~ 279 (477)
++++|||+|+.|+.+|..+++.+ .+|+++.+.+.. .+.+. .++.. ...+.+++.|++++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 57999999999999999998764 478999887643 12221 11111 13345577899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+++.++..+ .+ ++..+.+|.+|+|||.+|....
T Consensus 83 ~id~~~~~v--~~------~~~~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAEAQVV--KS------QGNQWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECCCCEE--EE------CCeEEeCCEEEECCCCCCCCCC
Confidence 997655433 32 3468999999999999987654
No 283
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.11 E-value=3.2e-06 Score=85.51 Aligned_cols=41 Identities=34% Similarity=0.525 Sum_probs=37.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~ 84 (477)
++|+|||||+|||+||+.|++.| ++|+|+|+++.+||.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 36999999999999999999987 899999999999997643
No 284
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=3e-05 Score=78.42 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=65.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||++|+.+|..|.+.|.+|+|+++.+.+. |. . +
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------~~-----~-----------------------d-- 210 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------PG-----E-----------------------D-- 210 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------cc-----c-----------------------c--
Confidence 3589999999999999999999999999999854321 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCC--EEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+.+.+++.+++++.+. +..++.. .+.+. .+++..++.+|.|++|+|.+|.
T Consensus 211 ----------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~-~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 ----------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFE-YEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEE-ECCceEEEEeCEEEEecCCccC
Confidence 0011122345566789988873 4445432 23333 2343457999999999999885
No 285
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.11 E-value=8.9e-06 Score=79.61 Aligned_cols=36 Identities=39% Similarity=0.375 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G 79 (477)
.||+|||||+||+.||..|++.|.+|+|+|+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 479999999999999999999999999999866543
No 286
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.10 E-value=1.5e-05 Score=86.57 Aligned_cols=93 Identities=24% Similarity=0.242 Sum_probs=72.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+||++++.+.+. | .++.++.+...+.+++.||+|.+++.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 47999999999999999999999999999999987552 2 34667777777888999999998875521
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~ 318 (477)
.+++. +.....+|.|++|+|.. |..
T Consensus 382 -----dit~~-----~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 382 -----TATLE-----DLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -----EEeHH-----HhccccCCEEEEeCCCCCCCc
Confidence 23322 22345799999999984 554
No 287
>PLN02268 probable polyamine oxidase
Probab=98.10 E-value=3.7e-06 Score=84.60 Aligned_cols=41 Identities=37% Similarity=0.558 Sum_probs=38.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
.+|+|||||.|||+||+.|.+.|++|+|+|+++++||.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 37999999999999999999999999999999999998643
No 288
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.10 E-value=3.5e-06 Score=85.48 Aligned_cols=42 Identities=31% Similarity=0.474 Sum_probs=38.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCCCceeec
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~ 84 (477)
++||+|||||++||+||+.|++. |++|+|+|+++.+||.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 36899999999999999999998 9999999999999998754
No 289
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.10 E-value=3.1e-05 Score=77.68 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=66.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.. +. ++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~--------~~----------------------------~~-- 178 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN--------KL----------------------------FD-- 178 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc--------cc----------------------------cC--
Confidence 36899999999999999999999999999998543210 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
......+.+.+++.+++++.+ .+..++.+...+...+| .++.+|.||+|+|.+|.
T Consensus 179 ----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 179 ----------EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG--GVYQADMVILATGIKPN 234 (427)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC--CEEEeCEEEECCCccCC
Confidence 001112234556678998866 45555544333344556 57999999999999885
No 290
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.10 E-value=4.3e-06 Score=74.39 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=36.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
.+|+|||+|+||++||..|+..|.+|+|+||..-+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 4699999999999999999999999999999988988654
No 291
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=4.3e-06 Score=76.21 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=39.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
++|++|||+|.+|+..|..|++.|.+|.||||++.+||.|-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 4799999999999999999999999999999999999998544
No 292
>PLN02576 protoporphyrinogen oxidase
Probab=98.10 E-value=4.1e-06 Score=85.78 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=39.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCceeec
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~ 84 (477)
.++||+|||||++||+||+.|++. |.+|+|+|+++.+||.+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 357999999999999999999999 9999999999999997654
No 293
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.09 E-value=3.6e-05 Score=78.40 Aligned_cols=138 Identities=27% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCC-------------------------------C--------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-------------------------------D-------- 254 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------------------~-------- 254 (477)
.|+|+|||+|++|+-.+..+.+.|.+++++++++.+...+ +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3789999999999999999999999999999988763110 0
Q ss_pred ---HHHHHHHHHHHHhcCc--EEEeCceEEEEEEcCC-----eEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCC
Q 011787 255 ---GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD-----GVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLG 322 (477)
Q Consensus 255 ---~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~-----~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~l~ 322 (477)
.++.+.++...+.-++ .+.++++|.+++..++ +..++.. .++..++..+|.|++|+|.- |+.+..
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~P~~P~~- 157 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSKPNIPEP- 157 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCCCCCChh-
Confidence 4677777777776665 5788999999987543 3445543 34444567799999999954 443310
Q ss_pred ccccceeecCCCCeecCCCCCC----CCCCeEEecccC
Q 011787 323 LDKIGVETDKMGRIPVNERFAT----NIPGVYAIGDVI 356 (477)
Q Consensus 323 ~~~~gl~~~~~g~i~vd~~l~t----~~~~vya~GD~~ 356 (477)
.--|++.- .|.+.=...++. ..++|-++|-..
T Consensus 158 -~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 158 -SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp ---CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred -hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 01122211 244432222221 346788988654
No 294
>PTZ00367 squalene epoxidase; Provisional
Probab=98.09 E-value=7.9e-06 Score=83.79 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
.++||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 36899999999999999999999999999999964
No 295
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.9e-06 Score=82.11 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=39.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (477)
++|+|+|||.|||+||.+|++.|++|+|+|.++.+||-|..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~ 43 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee
Confidence 4799999999999999999999999999999999999876543
No 296
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.08 E-value=1.8e-05 Score=77.13 Aligned_cols=105 Identities=27% Similarity=0.262 Sum_probs=71.8
Q ss_pred cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------CCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------MDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 211 ~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... .+.+......+.+.+.|+++..++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 345789999999999999999999999999999998776321 23333344456667779999999888665
Q ss_pred EE----cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787 282 DL----SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (477)
Q Consensus 282 ~~----~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~ 318 (477)
+. ..+....... ..++..+.+|.||+|+|.. |..
T Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 95 EPLHEEEGDEFVERIV---SLEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred cccccccccccccccC---CHHHHHhhCCEEEEEeCCCCCCc
Confidence 32 1111111110 0112247899999999984 543
No 297
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=5.2e-05 Score=75.22 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=69.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+-|+..|..++++|.+|+|+|+.+.+ .|. .
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i---------Lp~-----~-------------------------- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI---------LPG-----E-------------------------- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC---------CCc-----C--------------------------
Confidence 467999999999999999999999999999996543 110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
-..+.+.+...+++.++++..+.. ..+. .+.+.+..+++....+.+|++++|+|-+|..
T Consensus 213 ---------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 213 ---------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 011223334555666788887743 3332 2236777777643478999999999999863
No 298
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.08 E-value=4.2e-06 Score=85.52 Aligned_cols=42 Identities=36% Similarity=0.493 Sum_probs=38.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
.||+|||||++||+||..|++.|++|+|+|+++.+||.+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 689999999999999999999999999999999999976543
No 299
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.07 E-value=4.8e-05 Score=73.37 Aligned_cols=93 Identities=22% Similarity=0.389 Sum_probs=67.2
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEE-eCCCcC--CCCC--------------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVE-FAADIV--PSMD-------------------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~-~~~~~~--~~~~-------------------------------------- 254 (477)
.|+|||||+.|+|.|..+++.|.+|.++. ..+.+. +.-+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999994 333331 1111
Q ss_pred --------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 255 --------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 255 --------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
..+.+.+.+.+++ .+++++ ..+|+++..+++.+. |.+. ++..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~-----~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTK-----DGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEET-----TSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeC-----CCCEEecCEEEEeccc
Confidence 2355566677776 588886 678999988877766 4443 6789999999999998
No 300
>PLN02529 lysine-specific histone demethylase 1
Probab=98.07 E-value=5.8e-06 Score=86.57 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=40.6
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 38 ~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
++....+||+|||||+||++||..|++.|++|+|+|+++.+||.+.
T Consensus 155 ~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 155 PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 3344568999999999999999999999999999999998888764
No 301
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.06 E-value=2.6e-05 Score=78.29 Aligned_cols=35 Identities=40% Similarity=0.591 Sum_probs=31.0
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEecCCC--CCcee
Q 011787 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGA--LGGTC 82 (477)
Q Consensus 48 IIGgG~AGl~aA~~l~~~g~~V~lie~~~~--~GG~~ 82 (477)
|||+|.||++||.++++.|.+|+|+||... .||..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 799999999999999999999999999764 46643
No 302
>PRK07233 hypothetical protein; Provisional
Probab=98.06 E-value=4.5e-06 Score=83.96 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
..+.+.+.+.+++.|++++++++|++|+.+++++.+... ++..+++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~-----~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEV-----DGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEe-----CCceEECCEEEECCCH
Confidence 356777888888889999999999999887776654432 3457999999999874
No 303
>PRK05868 hypothetical protein; Validated
Probab=98.05 E-value=5.6e-05 Score=74.22 Aligned_cols=100 Identities=24% Similarity=0.369 Sum_probs=74.2
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---CC--C-------------HH--------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---SM--D-------------GE-------------------- 256 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~--~-------------~~-------------------- 256 (477)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .. . +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999998765421 00 0 00
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787 257 ---------------------IRKQFQRSLE---KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (477)
Q Consensus 257 ---------------------~~~~~~~~l~---~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~ 312 (477)
....+.+.|. ..|+++++++++++++.+++++.+++. ++.++++|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----dg~~~~adlvIgAD 156 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE-----RAAAREFDLVIGAD 156 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC-----CCCeEEeCEEEECC
Confidence 0112223322 358899999999999877778888775 45689999999999
Q ss_pred cCCCCCC
Q 011787 313 GRTPFTA 319 (477)
Q Consensus 313 G~~p~~~ 319 (477)
|.....-
T Consensus 157 G~~S~vR 163 (372)
T PRK05868 157 GLHSNVR 163 (372)
T ss_pred CCCchHH
Confidence 9877653
No 304
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.04 E-value=1.7e-05 Score=85.25 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=72.1
Q ss_pred eEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCcC--C-CCCH---------HHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 217 LVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV--P-SMDG---------EIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 217 v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~--~-~~~~---------~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
|+|||+|+.|+.+|..+++.+ .+|+++.+.+.+. + .+.. ++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999988764 5899999887641 1 1111 12222345678889999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+..... +.+. ++.++.+|.+|+|||..|+...
T Consensus 81 d~~~k~--V~~~-----~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQKQ--VITD-----AGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCCCE--EEEC-----CCcEeeCCEEEECCCCCcCCCC
Confidence 766543 3332 5578999999999999987654
No 305
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.04 E-value=5.7e-06 Score=84.49 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=38.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
+||+|||||.+|++||..|++.|++|+|+||+..+||.+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999998765
No 306
>PRK07045 putative monooxygenase; Reviewed
Probab=98.04 E-value=5.3e-06 Score=82.11 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+.++||+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 45689999999999999999999999999999997754
No 307
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.04 E-value=2.8e-05 Score=83.53 Aligned_cols=90 Identities=28% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||||+.|+.+|..|++.|.+|+++++.+.+. | .++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 46899999999999999999999999999999877542 2 134455555567778889999998876 221
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
+. +.....+|.||+|+|..+.
T Consensus 616 --------le-----~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 --------VE-----QLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred --------hh-----hheeccCCEEEECcCCCCC
Confidence 11 1234568999999999864
No 308
>PLN02463 lycopene beta cyclase
Probab=98.04 E-value=6.1e-05 Score=75.21 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=73.9
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCC-C---------------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPS-M--------------------------------------- 253 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~-~--------------------------------------- 253 (477)
-+|+|||+|+.|+.+|..+++.|.+|.++++.+.. .|. +
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 37999999999999999999999999999986532 110 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 254 ----DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 254 ----~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
..++.+.+.+.+.+.|++++ ...|++++..+++..+++. ++.++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~-----dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD-----DGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC-----CCCEEEcCEEEECcCCCcC
Confidence 01233445555667799987 5789999887777777765 4568999999999998764
No 309
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=7.3e-05 Score=77.31 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=74.3
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-----------CCC----CCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------VPS----MDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-----------~~~----~~~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
..|+|||||+.|+.+|..+++.|.+|+++++...- .|. ...++.+.+.+.+++.|++++ +++|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 46999999999999999999999999999975421 011 123566777778888899986 67888
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
.++.+++...+... + ..+.+|.+|+|+|.+|+...
T Consensus 84 ~i~~~~~~~~V~~~-----~-g~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 84 DVDFDGDIKTIKTA-----R-GDYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEEecCCEEEEEec-----C-CEEEEeEEEECCCCccCCCC
Confidence 88765544444432 2 25889999999999987643
No 310
>PLN02661 Putative thiazole synthesis
Probab=98.03 E-value=0.00034 Score=66.52 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=97.9
Q ss_pred CCeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCcCC---------------------------CCC-----------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVP---------------------------SMD----------- 254 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~---------------------------~~~----------- 254 (477)
.-.|+|||+|..|+-+|..+++. |.+|+++++...+.. .++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35899999999999999999976 889999998764311 001
Q ss_pred HHHHHHHH-HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEe------ecCC---CceEEEEcCEEEEeecCCCCCCCCCc
Q 011787 255 GEIRKQFQ-RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLE------PAAG---GEKTILEADVVLVSAGRTPFTAGLGL 323 (477)
Q Consensus 255 ~~~~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~------~~~~---~~~~~i~~D~vi~a~G~~p~~~~l~~ 323 (477)
.++...+. +.+++.|++++.++.+.++..+++++. +.+. +... .+...+.++.||+|||-.+.......
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~ 251 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 251 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence 11112233 344457899999999999877766554 3321 1111 12347999999999996553211111
Q ss_pred c---ccceee--cCCCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcCC
Q 011787 324 D---KIGVET--DKMGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAGK 379 (477)
Q Consensus 324 ~---~~gl~~--~~~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~~ 379 (477)
+ ..|+.. ......+++. +-+.-+||+|++|=.+ +.|...+ .+ ...|+.||+.|+.+
T Consensus 252 ~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 252 KRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 1 111100 0011122221 1123489999999876 3444322 23 34688888888754
No 311
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=5.4e-05 Score=76.73 Aligned_cols=97 Identities=26% Similarity=0.357 Sum_probs=67.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||||+.|+.+|..|++.|.+|+++++.+.+. |. .+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~----------------------------~~--- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------PG----------------------------ED--- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------Cc----------------------------CC---
Confidence 589999999999999999999999999999854331 10 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecC-CceEEEEecEEEEccCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE-GGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~-g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+.+.+++.+++++.+ .+..++ .+.+.+...+ ++..++.+|.||+|+|.+|.
T Consensus 213 ---------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 ---------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 001112234556678998877 344444 2345555443 33367999999999999985
No 312
>PRK07190 hypothetical protein; Provisional
Probab=98.02 E-value=7.9e-05 Score=75.62 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=73.9
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---C---------------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S--------------------------------------- 252 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~--------------------------------------- 252 (477)
..|+|||+|++|+-+|..|++.|.+|.++++.+.... .
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999998754210 0
Q ss_pred ---------CC------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787 253 ---------MD------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (477)
Q Consensus 253 ---------~~------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a 311 (477)
++ ..+...+.+.+++.|++++.+++|++++.+++++.+.+. +++++.+++||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~-----~g~~v~a~~vVgA 160 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS-----NGERIQSRYVIGA 160 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC-----CCcEEEeCEEEEC
Confidence 00 012223445567789999999999999888887776654 3458999999999
Q ss_pred ecCCC
Q 011787 312 AGRTP 316 (477)
Q Consensus 312 ~G~~p 316 (477)
.|.+.
T Consensus 161 DG~~S 165 (487)
T PRK07190 161 DGSRS 165 (487)
T ss_pred CCCCH
Confidence 99654
No 313
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=6.4e-05 Score=76.20 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=67.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~d-- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------------------------------------LD-- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------------------------------------CC--
Confidence 468999999999999999999999999999985433110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+...+++.+++++.+ .+..+. .+.+.+...+| .++.+|.+++|+|.+|.
T Consensus 216 ----------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 ----------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG--KKIKADCLLYANGRTGN 273 (461)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC--CEEEeCEEEEeecCCcc
Confidence 001112234456678888876 344443 34556666666 57999999999999985
No 314
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.02 E-value=8.3e-05 Score=67.90 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=52.9
Q ss_pred CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh------cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEE
Q 011787 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEK------QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVL 309 (477)
Q Consensus 237 g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi 309 (477)
|+.|---+|....+|..- ++...+...+++ .-+++.++++|..|...++.+. +++.+ ..++...+..|.|+
T Consensus 122 GHSvpRTHr~s~plppgf-ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VV 199 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPPGF-EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVV 199 (477)
T ss_pred CCCCCcccccCCCCCCch-HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceE
Confidence 456666667777765432 344444444433 2478899999999998777775 55553 45566788999999
Q ss_pred EeecCCC
Q 011787 310 VSAGRTP 316 (477)
Q Consensus 310 ~a~G~~p 316 (477)
+|+|--.
T Consensus 200 latGGf~ 206 (477)
T KOG2404|consen 200 LATGGFG 206 (477)
T ss_pred EecCCcC
Confidence 9998443
No 315
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0003 Score=66.36 Aligned_cols=99 Identities=26% Similarity=0.380 Sum_probs=72.6
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-----------CCC-----CCHHHHHHHHHHHHhcCcEEEeCce
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-----------VPS-----MDGEIRKQFQRSLEKQKMKFMLKTK 277 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-----------~~~-----~~~~~~~~~~~~l~~~gv~~~~~~~ 277 (477)
..++|||+|+.|+-.|-.+.+.+.+ +.+++....- .|. ..+++.+.+.+..+.-|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999988 4555543111 122 2356777777888888999886 77
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+.+++..++.+.+.+. +++ ++++.||+|+|..+....
T Consensus 83 v~~v~~~~~~F~v~t~-----~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGGPFKVKTD-----KGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCceEEEEEC-----CCe-EEEeEEEECcCCcccCCC
Confidence 8888766545555543 444 999999999998887654
No 316
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.01 E-value=0.0001 Score=73.80 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=71.7
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC------------------CCC----C------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV------------------PSM----D------------------ 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~~----~------------------ 254 (477)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +.+ +
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 369999999999999999999999999999875321 000 0
Q ss_pred ----------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787 255 ----------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (477)
Q Consensus 255 ----------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~ 312 (477)
..+.+++.+..++.|++++.+++|+++..+++.+..... ++.++.+|.||.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-----~g~~i~A~~VI~A~ 160 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-----DGDVIEAKTVILAD 160 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-----CCcEEECCEEEEEe
Confidence 012234555667789999999999998776665543322 34579999999999
Q ss_pred cCCC
Q 011787 313 GRTP 316 (477)
Q Consensus 313 G~~p 316 (477)
|...
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9754
No 317
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.01 E-value=1.7e-05 Score=79.72 Aligned_cols=93 Identities=33% Similarity=0.375 Sum_probs=70.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 36799999999999999999999999999999876541 2 2466777777778889999999887541
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFTA 319 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~~ 319 (477)
. .+.+. + ....+|.||+|+|. .|...
T Consensus 208 --~--~v~~~-----~-~~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 208 --K--TATLE-----E-LFSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred --C--cCCHH-----H-HHhhCCEEEEeCCCCCCCcC
Confidence 1 12221 1 13468999999997 56543
No 318
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.01 E-value=1.7e-05 Score=80.20 Aligned_cols=92 Identities=30% Similarity=0.365 Sum_probs=71.2
Q ss_pred CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (477)
Q Consensus 212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~ 282 (477)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. | .++.++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 457899999999999999999999999999999887652 2 23567777778888899999998887521
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CC
Q 011787 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PF 317 (477)
Q Consensus 283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~ 317 (477)
.+.+. + ..+.+|.||+|+|.. |+
T Consensus 216 ------~v~~~-----~-~~~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 216 ------DITLD-----E-LRAGYDAVFIGTGAGLPR 239 (457)
T ss_pred ------ccCHH-----H-HHhhCCEEEEccCCCCCC
Confidence 11111 1 237799999999985 44
No 319
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=6.6e-05 Score=76.11 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=66.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. |.. +
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~~~----------------------------d--- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------PNE----------------------------D--- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------Ccc----------------------------C---
Confidence 589999999999999999999999999999854321 100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec--CCceEEEEecEEEEccCCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI--EGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~--~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
......+.+.+++.+++++.+ .+..+.. ..+.+... +|...++.+|.||+|+|.+|..
T Consensus 213 ---------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 213 ---------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred ---------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 001112334566779998877 3444432 23334332 5544679999999999998853
No 320
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.99 E-value=6.2e-06 Score=84.56 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
..+.+.+.+.+++.|+++++++.|++|..+++++ .+++. +++++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~-----~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLA-----DGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEEC-----CCCEEECCEEEECCcHH
Confidence 4677888888999999999999999998776653 45543 45689999999988853
No 321
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.99 E-value=8.2e-05 Score=73.47 Aligned_cols=97 Identities=16% Similarity=0.383 Sum_probs=73.2
Q ss_pred eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcCCC---------CC-------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPS---------MD------------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~---------~~------------------------------- 254 (477)
.|+|||||+.|+-+|..|++.| .+|+++++.+...+. +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999987532110 00
Q ss_pred ------------------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 011787 255 ------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309 (477)
Q Consensus 255 ------------------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi 309 (477)
.++.+.+.+.+.+ .|++++++++++++..+++++.+++. ++.++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vV 155 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD-----NGQQLRAKLLI 155 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC-----CCCEEEeeEEE
Confidence 1123334445555 48999999999999877777777654 34579999999
Q ss_pred EeecCCCC
Q 011787 310 VSAGRTPF 317 (477)
Q Consensus 310 ~a~G~~p~ 317 (477)
.|.|....
T Consensus 156 ~AdG~~S~ 163 (382)
T TIGR01984 156 AADGANSK 163 (382)
T ss_pred EecCCChH
Confidence 99997754
No 322
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.98 E-value=8.4e-05 Score=74.89 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=67.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..+++.|.+|+++++.+.+. |. ++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------~~----------------------------~d-- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------RG----------------------------FD-- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------cc----------------------------cC--
Confidence 3579999999999999999999999999999854320 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+...+++.+++++.+ .+..++ .+...+.+.++ .++.+|.+|+|+|.+|.
T Consensus 207 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 ----------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG--EEIVADVVLFATGRSPN 264 (446)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC--cEeecCEEEEeeCCCcC
Confidence 001112234456678998876 344443 34456666566 67999999999999885
No 323
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.97 E-value=6e-05 Score=75.18 Aligned_cols=97 Identities=33% Similarity=0.424 Sum_probs=69.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||+|++|+.+|..|++.|++|+++|+.+.+++....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence 379999999999999999999999999999998777653110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEE--E---EEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEV--S---VDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~--~---v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+.+.++.++++++.+. +..++.... . +...++ ..+.+|.+++++|.+|+
T Consensus 178 ----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 ----------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN 238 (415)
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence 0112223456667788886664 344544321 1 344445 78999999999999985
No 324
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.96 E-value=8.8e-06 Score=82.54 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=36.9
Q ss_pred CcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCceeec
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~ 84 (477)
++|+|||||++||+||+.|++. |.+|+|+|+++++||.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 5799999999999999999986 3799999999999998654
No 325
>PRK06370 mercuric reductase; Validated
Probab=97.95 E-value=0.0001 Score=74.64 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=66.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... ..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~--------------~~------------------------- 211 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR--------------ED------------------------- 211 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc--------------cC-------------------------
Confidence 368999999999999999999999999999985443110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec-CCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI-EGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+ .+..++. +...+... ++...++.+|.||+|+|.+|..
T Consensus 212 ----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 212 ----------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 001112234456678998876 4444432 23333322 1223679999999999999863
No 326
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.94 E-value=8.4e-05 Score=75.35 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=66.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||+|+.|+.+|..|++.|.+|+|+++.+.+. |. . +
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~-----~-----------------------d--- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------PR-----E-----------------------E--- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------Cc-----c-----------------------C---
Confidence 689999999999999999999999999999854331 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEec-CCceEEEEecEEEEccCCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
......+...+++.+++++.+. +..+. .+...+... ++...++.+|.+|+|+|.+|..
T Consensus 207 ---------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 207 ---------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 0011122344566789888774 44443 233444432 2223679999999999999853
No 327
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.94 E-value=0.00011 Score=74.43 Aligned_cols=96 Identities=23% Similarity=0.365 Sum_probs=67.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+... ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~--------------~d-------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG--------------ED-------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC--------------CC--------------------------
Confidence 58999999999999999999999999999985433110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
......+...+++.+|+++.+ .+..+ +.+.+.+...+| .++.+|.+++|+|.+|..
T Consensus 218 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g--~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 218 ---------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG--RTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC--cEEEecEEEEeecCCcCC
Confidence 001112334566778988876 34444 234556666666 679999999999999863
No 328
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.94 E-value=3.1e-05 Score=78.20 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=70.9
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999999887542 2 246667677778889999999998876320
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+.+. .....+|.||+|+|..+..
T Consensus 218 ------~~~~------~~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 ------ISLD------DLLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ------cCHH------HHHhcCCEEEEEeCCCCCC
Confidence 1111 1234699999999998753
No 329
>PRK06753 hypothetical protein; Provisional
Probab=97.93 E-value=9.1e-05 Score=72.87 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=71.4
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CCHHH---------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEI--------------------------------- 257 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~~~~--------------------------------- 257 (477)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999988753210 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 258 ---------------RKQFQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 258 ---------------~~~~~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
...+.+.|.+ .+.++++++++++++.+++++.+++. ++.++.+|+||.|.|..+.+
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA-----DGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC-----CCCEEecCEEEECCCcchHH
Confidence 1112223322 14568889999999887777777764 45689999999999977654
No 330
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.93 E-value=1.1e-05 Score=81.71 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=37.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
+|+|||||++|++||+.|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997643
No 331
>PRK06116 glutathione reductase; Validated
Probab=97.92 E-value=9.8e-05 Score=74.57 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. . . +
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~-----~-----------------------~-- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------G-----F-----------------------D-- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------c-----c-----------------------C--
Confidence 36899999999999999999999999999998543210 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CC-EEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PS-EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~-~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+...+++.+++++.+ .+..++ .+ .+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 208 ----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 ----------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG--ETLTVDCLIWAIGREPN 266 (450)
T ss_pred ----------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC--cEEEeCEEEEeeCCCcC
Confidence 001122234456678988876 344443 22 256666666 67999999999999885
No 332
>PRK07538 hypothetical protein; Provisional
Probab=97.92 E-value=0.00016 Score=72.11 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=73.8
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CC------------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD------------------------------------ 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~------------------------------------ 254 (477)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 5899999999999999999999999999987643210 00
Q ss_pred --------------------HHHHHHHHHHHHh-cC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787 255 --------------------GEIRKQFQRSLEK-QK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (477)
Q Consensus 255 --------------------~~~~~~~~~~l~~-~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~ 312 (477)
..+.+.+.+.+.+ .| ..+++++++++++.+++++.+.+.+...+++.++.+|+||-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 0111222333333 35 4699999999998777766666654444556789999999999
Q ss_pred cCCCCC
Q 011787 313 GRTPFT 318 (477)
Q Consensus 313 G~~p~~ 318 (477)
|.....
T Consensus 162 G~~S~v 167 (413)
T PRK07538 162 GIHSAV 167 (413)
T ss_pred CCCHHH
Confidence 987654
No 333
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.90 E-value=0.00019 Score=68.26 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+.+|+|||||.+|+++|+.|.+.|.+|+|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 358999999999999999999999999999997654
No 334
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.89 E-value=0.00011 Score=67.70 Aligned_cols=45 Identities=33% Similarity=0.593 Sum_probs=37.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCC---------CceeeccC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGAL---------GGTCLNVG 86 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~---------GG~~~~~~ 86 (477)
.++||+|||||-.|.+.|+-|+++ |++|++||+++.. ||.|....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 478999999999999999999875 6999999997643 67775543
No 335
>PLN02507 glutathione reductase
Probab=97.89 E-value=0.00015 Score=73.98 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=67.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+..|..|++.|.+|+|+++.+.+- +. ++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l---------~~----------------------------~d-- 243 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL---------RG----------------------------FD-- 243 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC---------cc----------------------------cC--
Confidence 3589999999999999999999999999999854320 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
......+.+.+++.+++++.+ .+..+. .+.+.+...+| .++.+|.+++|+|.+|..
T Consensus 244 ----------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 244 ----------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHG--EEFVADVVLFATGRAPNT 302 (499)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCC--cEEEcCEEEEeecCCCCC
Confidence 001122334556778998877 344443 34556666666 679999999999999853
No 336
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.89 E-value=0.00019 Score=71.00 Aligned_cols=98 Identities=23% Similarity=0.429 Sum_probs=74.1
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---C------------------C--------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S------------------M-------------------- 253 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~------------------~-------------------- 253 (477)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.... . +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999998765311 0 0
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787 254 ------------------------DGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVV 308 (477)
Q Consensus 254 ------------------------~~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v 308 (477)
...+.+.+.+.+++.| ++++ ++++++++.+++.+.+++. ++.++.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~v 159 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA-----DGQVLRADLV 159 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC-----CCCEEEeeEE
Confidence 0122334445566666 8888 8899999877777777664 4468999999
Q ss_pred EEeecCCCCC
Q 011787 309 LVSAGRTPFT 318 (477)
Q Consensus 309 i~a~G~~p~~ 318 (477)
|.|.|..+..
T Consensus 160 I~adG~~S~v 169 (388)
T PRK07608 160 VGADGAHSWV 169 (388)
T ss_pred EEeCCCCchH
Confidence 9999987654
No 337
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.88 E-value=0.00025 Score=70.24 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=75.4
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C-----------------------------C-----------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-----------------------------S----------- 252 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~-----------------------------~----------- 252 (477)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999886410 0 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787 253 -----M-------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 253 -----~-------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
+ ...+.+.+.+...+.|+++++++++++++. +++.+.+++. .++...++++|+||-|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCC
Confidence 0 012223344444667999999999999876 5556666663 233445799999999999
Q ss_pred CCCCCC
Q 011787 314 RTPFTA 319 (477)
Q Consensus 314 ~~p~~~ 319 (477)
.....-
T Consensus 161 ~~S~vR 166 (392)
T PRK08243 161 FHGVSR 166 (392)
T ss_pred CCCchh
Confidence 887653
No 338
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.00036 Score=69.08 Aligned_cols=106 Identities=26% Similarity=0.263 Sum_probs=79.2
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC--------------C--------------------------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS--------------M-------------------------- 253 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------~-------------------------- 253 (477)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+... .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 688999999999999999999999999999998875210 0
Q ss_pred --C-HHHHHHHHHHHHhcCc--EEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCC
Q 011787 254 --D-GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAG 320 (477)
Q Consensus 254 --~-~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~ 320 (477)
+ .++.+.++...+.-++ .+.+++++..++..+ +...+...+.... ..+..+|.|++|+|-- |+...
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCc
Confidence 0 1456666666666664 577788888888777 5777776532221 3678899999999976 55543
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=97.86 E-value=5.5e-05 Score=76.34 Aligned_cols=95 Identities=25% Similarity=0.309 Sum_probs=68.6
Q ss_pred CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------CC--CCHH-HHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------PS--MDGE-IRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~--~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. ++.+ +.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 347899999999999999999999999999999866431 21 2233 556666778889999999886521
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT 318 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~ 318 (477)
.+.+.+ ....+.+|.|++|+|. .|..
T Consensus 217 -------~v~~~~----~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 -------TVTIDE----LLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred -------cCCHHH----HHhccCCCEEEEeCCCCCCCC
Confidence 111110 1124569999999997 5654
No 340
>PRK07846 mycothione reductase; Reviewed
Probab=97.86 E-value=0.00014 Score=73.16 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---------~----------------------------~d~- 207 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---------H----------------------------LDD- 207 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------c----------------------------cCH-
Confidence 36899999999999999999999999999998543310 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
.+...+...+ +.+++++.+ ++..++ .+...+.+.+| .++.+|.|++|+|.+|.
T Consensus 208 -----------~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 208 -----------DISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDG--STVEADVLLVATGRVPN 263 (451)
T ss_pred -----------HHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCC--cEeecCEEEEEECCccC
Confidence 0001111122 346777765 344443 23455666666 67999999999999985
No 341
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.85 E-value=2.4e-05 Score=80.07 Aligned_cols=41 Identities=41% Similarity=0.616 Sum_probs=37.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
++||||||+| ||++||.++++.|.+|+||||....||....
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 6899999999 9999999999999999999998877876544
No 342
>PRK14694 putative mercuric reductase; Provisional
Probab=97.85 E-value=0.00022 Score=72.32 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=64.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||+|+.|+.+|..|+++|.+|+++++...+ |. ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l----------~~-----~~------------------------- 217 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL----------SQ-----ED------------------------- 217 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC----------CC-----CC-------------------------
Confidence 358999999999999999999999999999873211 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+ .+..++ ...+.+.+.++ ++.+|.||+|+|.+|..
T Consensus 218 ----------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 ----------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG---TLRAEQLLVATGRTPNT 275 (468)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC---EEEeCEEEEccCCCCCc
Confidence 001122334566778998876 444443 23344544433 59999999999999853
No 343
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.84 E-value=5.8e-05 Score=76.64 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=70.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999887642 2 235566666677888899999998877410
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~ 318 (477)
+.. +.....+|.|++|+|.. |..
T Consensus 220 ------~~~------~~~~~~~d~VilAtGa~~~~~ 243 (485)
T TIGR01317 220 ------ISA------DELKEQFDAVVLAGGATKPRD 243 (485)
T ss_pred ------cCH------HHHHhhCCEEEEccCCCCCCc
Confidence 110 11235699999999997 443
No 344
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.84 E-value=5e-05 Score=76.21 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCCeeEEEcccHHHHHHHHHHHH--cCCcEEEEEeCCCcCC--------CC--CHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWAR--LGSEVTVVEFAADIVP--------SM--DGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~--------~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.. .. .+.+...+.+.++..+++++.+..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46889999999999999999987 7999999999987631 11 12344455666777889998775552
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
. .+++. .....+|.||+|+|..+.
T Consensus 104 -----~--dvtl~------~L~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 -----R--DVSLS------ELRDLYHVVVLAYGAESD 127 (491)
T ss_pred -----c--cccHH------HHhhhCCEEEEecCCCCC
Confidence 1 12222 123469999999998763
No 345
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=0.0002 Score=72.49 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..+.+.|.+|+|+|+.+.+. |. ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------~~----------------------------~d-- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------PG----------------------------TD-- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------CC----------------------------CC--
Confidence 4689999999999999999999999999999854331 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec---CCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~---~g~~~~i~~d~lvlAtG~~~~ 189 (477)
......+...+++.+|+++.+ .+..+.. +.+.+... +|....+.+|.|++|+|.+|.
T Consensus 215 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 215 ----------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred ----------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 001111234456678998877 3444432 34443322 233467999999999999985
No 346
>PLN02676 polyamine oxidase
Probab=97.83 E-value=2.3e-05 Score=79.47 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeec
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLN 84 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~ 84 (477)
.+||+|||||++||+||.+|++.|. +|+|+|+++.+||.+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 5799999999999999999999998 69999999999997643
No 347
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.83 E-value=0.00018 Score=72.48 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... . .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------~--------d------------------------- 206 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------F--------D------------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------c--------C-------------------------
Confidence 368999999999999999999999999999985433100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+. +..+.. ....+...++ ...+.+|.+++|+|.+|..
T Consensus 207 ----------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 207 ----------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG-KSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC-cEEEEcCEEEEeeCCCcCc
Confidence 0011122344566788888763 444432 2245555555 2569999999999999863
No 348
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00053 Score=72.38 Aligned_cols=90 Identities=24% Similarity=0.411 Sum_probs=73.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++. | .+|+.+.+.-.+.|.+.||+|++++++-.-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 47999999999999999999999999999999999873 2 457788888888999999999998876321
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+.+ ++..-+-|.|++|+|..-
T Consensus 1862 ------vs~------d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 ------VSL------DELKKENDAIVLATGSTT 1882 (2142)
T ss_pred ------ccH------HHHhhccCeEEEEeCCCC
Confidence 111 334556799999999654
No 349
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.83 E-value=0.00025 Score=71.94 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=64.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... . +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------~--------------------d-- 209 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------------E--------------------D-- 209 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------h--------------------h--
Confidence 368999999999999999999999999999985433110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--C-EEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~-~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++. ++++.+ .+..++. + .+.+...++...++.+|.+++|+|.+|..
T Consensus 210 ----------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 210 ----------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred ----------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 00111223445556 777765 3334432 1 34443334545679999999999999863
No 350
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.83 E-value=0.00038 Score=68.84 Aligned_cols=102 Identities=29% Similarity=0.417 Sum_probs=72.0
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC-CCcCC-----------CC------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADIVP-----------SM------------------------------ 253 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~~-----------~~------------------------------ 253 (477)
+|+|||+|+.|+-+|..|++.|.+|.++++. +...+ .+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999987 22100 00
Q ss_pred --------C-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec---CCCceEEEEcCEEEEeecCCCCC
Q 011787 254 --------D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---AGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 254 --------~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~---~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+ ..+.+.+.+...+.|++++.. .++++..+++.+.+++.+. ..+...++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 122234455556679999754 6888887777777776531 12233579999999999976543
No 351
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.82 E-value=0.00026 Score=69.92 Aligned_cols=99 Identities=22% Similarity=0.407 Sum_probs=72.3
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC--cC---C------CCCH-------------H---------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--IV---P------SMDG-------------E--------------- 256 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~~---~------~~~~-------------~--------------- 256 (477)
+|+|||||+.|+-+|..|++.|.+|+++++.+. +. + .+.+ .
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~ 84 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW 84 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence 699999999999999999999999999997641 00 0 0000 0
Q ss_pred ---------------------------HHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787 257 ---------------------------IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVV 308 (477)
Q Consensus 257 ---------------------------~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v 308 (477)
+...+.+.+++ .|++++.++++++++.+++++.+++. ++.++++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~~~lv 159 (384)
T PRK08849 85 EHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE-----SGAEIEAKWV 159 (384)
T ss_pred eCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC-----CCCEEEeeEE
Confidence 00011122222 37899999999999888888888775 4578999999
Q ss_pred EEeecCCCCCC
Q 011787 309 LVSAGRTPFTA 319 (477)
Q Consensus 309 i~a~G~~p~~~ 319 (477)
|.|.|..+..-
T Consensus 160 IgADG~~S~vR 170 (384)
T PRK08849 160 IGADGANSQVR 170 (384)
T ss_pred EEecCCCchhH
Confidence 99999988653
No 352
>PRK09897 hypothetical protein; Provisional
Probab=97.81 E-value=0.00034 Score=71.17 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=69.0
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCC-----------------------CHHHHHH---------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSM-----------------------DGEIRKQ--------- 260 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~-----------------------~~~~~~~--------- 260 (477)
++|+|||+|++|+-+|..|.+.+. +|++++++..+.... ++.+.++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987654 799999866442100 0111111
Q ss_pred -------------------------------HHHHHHhcC--cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787 261 -------------------------------FQRSLEKQK--MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (477)
Q Consensus 261 -------------------------------~~~~l~~~g--v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~ 307 (477)
+.+.+.+.| +.++.+++|++++..++++.+++.+ ++..+.+|.
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~----gg~~i~aD~ 157 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ----DLPSETFDL 157 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC----CCeEEEcCE
Confidence 122334455 7788888999998888777776531 346899999
Q ss_pred EEEeecCCCC
Q 011787 308 VLVSAGRTPF 317 (477)
Q Consensus 308 vi~a~G~~p~ 317 (477)
||+|+|..+.
T Consensus 158 VVLAtGh~~p 167 (534)
T PRK09897 158 AVIATGHVWP 167 (534)
T ss_pred EEECCCCCCC
Confidence 9999997553
No 353
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.80 E-value=0.00015 Score=67.85 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
....+||+|||||.+|.+.|..|++.|.+|.+|||+
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 445789999999999999999999999999999995
No 354
>PRK07045 putative monooxygenase; Reviewed
Probab=97.79 E-value=0.00033 Score=69.31 Aligned_cols=100 Identities=20% Similarity=0.372 Sum_probs=72.2
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--C---CC-----------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--S---MD----------------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~---~~----------------------------------- 254 (477)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. . +.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999998775310 0 00
Q ss_pred --------------------HHHHHHHHHHHH-hcCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 011787 255 --------------------GEIRKQFQRSLE-KQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS 311 (477)
Q Consensus 255 --------------------~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a 311 (477)
.++.+.+.+.+. ..|++++++++++.++.++++. .+++. +++++.+|+||-|
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----~g~~~~~~~vIgA 160 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS-----DGERVAPTVLVGA 160 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC-----CCCEEECCEEEEC
Confidence 012223333333 3479999999999998765553 34443 4568999999999
Q ss_pred ecCCCCCC
Q 011787 312 AGRTPFTA 319 (477)
Q Consensus 312 ~G~~p~~~ 319 (477)
.|.....-
T Consensus 161 DG~~S~vR 168 (388)
T PRK07045 161 DGARSMIR 168 (388)
T ss_pred CCCChHHH
Confidence 99877543
No 355
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.78 E-value=0.0003 Score=69.57 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=71.5
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----CC--------------C----------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----SM--------------D---------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----~~--------------~---------------------- 254 (477)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .+ +
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4699999999999999999999999999998753210 00 0
Q ss_pred -----------------------HHHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 011787 255 -----------------------GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (477)
Q Consensus 255 -----------------------~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~ 310 (477)
..+.+.+.+.+.+. ++. +++++|.+++.+++.+.+++. +++++.+|+||.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~ 161 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA-----DGTTLSARLVVG 161 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC-----CCCEEEEeEEEE
Confidence 01223334444444 455 778999999877777777664 456899999999
Q ss_pred eecCCCCC
Q 011787 311 SAGRTPFT 318 (477)
Q Consensus 311 a~G~~p~~ 318 (477)
|.|..+..
T Consensus 162 AdG~~S~v 169 (388)
T PRK07494 162 ADGRNSPV 169 (388)
T ss_pred ecCCCchh
Confidence 99987644
No 356
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=0.00031 Score=70.70 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=66.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||+|+.|+..|..|.+.|.+|+|+++.+.+. |.. .
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~~-----~------------------------- 198 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------PRE-----D------------------------- 198 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------CCc-----C-------------------------
Confidence 3589999999999999999999999999999854321 100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+ ++..++ ...+.+...++ ++.+|.+++|+|.+|..
T Consensus 199 ----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g---~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 ----------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA---QLAVDALLIASGRQPAT 256 (441)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC---eEEeCEEEEeecCCcCC
Confidence 001112334566778998876 344443 33455554444 58899999999999853
No 357
>PRK14727 putative mercuric reductase; Provisional
Probab=97.78 E-value=0.00034 Score=71.10 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=64.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||||+.|+..|..|++.|.+|+|+++...+ +. ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l----------~~-----~d-------------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL----------FR-----ED-------------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC----------Cc-----ch--------------------------
Confidence 58999999999999999999999999999873211 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+ .+..+. .+.+.+...++ ++.+|.+|+|+|..|..
T Consensus 228 ---------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g---~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 228 ---------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG---ELRAEKLLISTGRHANT 285 (479)
T ss_pred ---------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC---eEEeCEEEEccCCCCCc
Confidence 001122334556778888876 343332 34455555444 58899999999999853
No 358
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=7.7e-05 Score=80.09 Aligned_cols=94 Identities=29% Similarity=0.328 Sum_probs=69.8
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.||++++++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 36799999999999999999999999999999865431 2 2355666666777888999999887541
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFTA 319 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~~ 319 (477)
. .+++. +.....+|.||+|+|. .|...
T Consensus 506 --~--~v~~~-----~l~~~~ydavvlAtGa~~~~~l 533 (752)
T PRK12778 506 --K--TITIE-----ELEEEGFKGIFIASGAGLPNFM 533 (752)
T ss_pred --C--cCCHH-----HHhhcCCCEEEEeCCCCCCCCC
Confidence 1 12222 2234569999999998 46543
No 359
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.78 E-value=7e-05 Score=82.16 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 284 (477)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 5799999999999999999999999999999886552 2 2356777778888999999999886541
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (477)
Q Consensus 285 ~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~ 318 (477)
. .+++... .....+|.||+|+|.. |..
T Consensus 505 -~--~~~~~~l----~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K--TFTVPQL----MNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C--ccCHHHH----hhccCCCEEEEecCCCCCCC
Confidence 1 1121110 0124589999999984 554
No 360
>PLN02697 lycopene epsilon cyclase
Probab=97.77 E-value=0.00035 Score=71.05 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=70.2
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCC---C-------------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM---D------------------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~---~------------------------------------- 254 (477)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+.+.. .
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 469999999999999999999999999998653321100 0
Q ss_pred ---HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 ---GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ---~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+.+.+.|+++ .++.|+++..+++++.+.... ++.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~----dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACE----DGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEc----CCcEEECCEEEECCCcCh
Confidence 122344555566679998 578999998766665543221 456899999999999877
No 361
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.77 E-value=0.00026 Score=71.34 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|++.|.+|++|++.+.+... ++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------------------------------------~d~- 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------------------------------------LDE- 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------------------------------------cCH-
Confidence 368999999999999999999999999999985432100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
+ +...+...+ +.+++++.+ .+..++ .+.+.+...+| .++.+|.+++|+|.+|.
T Consensus 211 ~-----------~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 D-----------ISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDG--STVTADVLLVATGRVPN 266 (452)
T ss_pred H-----------HHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCC--CEEEcCEEEEeeccCcC
Confidence 0 001111222 246777765 344443 34456666666 57999999999999985
No 362
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.76 E-value=0.0003 Score=71.37 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
.+++|||||+.|+.+|..|.+.|.+|+||++.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 6899999999999999999999999999998543
No 363
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=69.84 Aligned_cols=35 Identities=46% Similarity=0.649 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
...|||||||||.||+.||..++|.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56799999999999999999999999999999874
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.75 E-value=0.00011 Score=74.52 Aligned_cols=89 Identities=31% Similarity=0.441 Sum_probs=67.9
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.+......+.+++.|+++++++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 46899999999999999999999999999999887652 1 23555666666778889999999886631 0
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
+.. +.....+|.|++|+|..
T Consensus 220 ------~~~------~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 220 ------ITA------EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ------CCH------HHHHhhCCEEEEecCCC
Confidence 110 11235799999999997
No 365
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.75 E-value=0.00022 Score=73.90 Aligned_cols=300 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCCceeeccCccC-----------------------------chhhhhhhHHHHHHHhh
Q 011787 56 YVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP-----------------------------SKALLHSSHMYHEAMHS 106 (477)
Q Consensus 56 l~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p-----------------------------~~~l~~~~~~~~~~~~~ 106 (477)
|+||.++++.|.+|+||||....+|.....+... ...+...........++
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred hhhCCccccccccChHHHHHHHHH-------------------HHHHHHHHHHHHhhhCCeEEEEe---EEEEecCCEEE
Q 011787 107 FASHGVKFSSVEVDLPAMMAQKDK-------------------AVSNLTRGIEGLFKKNKVTYVKG---YGKFISPSEVS 164 (477)
Q Consensus 107 ~~~~g~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~ 164 (477)
+.++|+++....-.-......... ....+...+.+...+.+++++.. .....+.+...
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Q ss_pred E-----EecCCceEEEEecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHH-----
Q 011787 165 V-----DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA----- 234 (477)
Q Consensus 165 v-----~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~----- 234 (477)
+ ...+|....+.++.||||||+-....+... .....+-+....... +|+-...+|+.+...
T Consensus 161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~--~~~~~tGDG~~mA~~-------aGA~l~~me~~q~~Pt~~~~ 231 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTT--NALINTGDGVGMALR-------AGVPVQDIEMWQFHPTGIAG 231 (570)
T ss_pred EEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCC--CCCCcCcHHHHHHHH-------cCCCeeCccceeeecceeCC
Q ss_pred ---------HcCCcEEEEEeCCCcCCCCCHH----------HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec
Q 011787 235 ---------RLGSEVTVVEFAADIVPSMDGE----------IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA 295 (477)
Q Consensus 235 ---------~~g~~Vtli~~~~~~~~~~~~~----------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~ 295 (477)
+--.-+.+-....+++...++. ......+....+|.. ...+.+.+.+.+.
T Consensus 232 ~~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~-----------~~~~~v~ld~~~l 300 (570)
T PRK05675 232 AGVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCG-----------PNKDHVLLKLDHL 300 (570)
T ss_pred CceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCcc-----------CCCCEEEEEcCCC
Q ss_pred CCCc-eEEEEcCEEEEee--cCCCCCCCCCccccceeecCCCCeecCCCCCC----------CCCCeEEecccCCCCCch
Q 011787 296 AGGE-KTILEADVVLVSA--GRTPFTAGLGLDKIGVETDKMGRIPVNERFAT----------NIPGVYAIGDVIPGPMLA 362 (477)
Q Consensus 296 ~~~~-~~~i~~D~vi~a~--G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t----------~~~~vya~GD~~~~~~~~ 362 (477)
.... ...++.-.-.... |..|..+. ++-..-..--.|++.+|...+| ++||+||+|+|++.-...
T Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~d~~~~~--i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hG 378 (570)
T PRK05675 301 GEEVLHSRLPGICELSKTFAHVDPVVAP--IPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHG 378 (570)
T ss_pred CHHHHHHhccHHHHHHHHhcCCCcCCCc--eEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCC
Q ss_pred ---------hHHHHHHHHHHHHHc
Q 011787 363 ---------HKAEEDGVACVEFLA 377 (477)
Q Consensus 363 ---------~~A~~~g~~aa~~i~ 377 (477)
..|...|++|++++.
T Consensus 379 anrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 379 ANRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred ccccccccHHHHHHHHHHHHHHHH
No 366
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=0.0003 Score=71.78 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=64.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||||+.|+.+|..|++.|.+|+|+++...+.. . +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~-------~-------------------------------d--- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRG-------F-------------------------------D--- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccccc-------C-------------------------------C---
Confidence 4899999999999999999999999999986311100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
......+...+++.+++++.+. +..+. .....+...+| .++.+|.|++|+|.+|.
T Consensus 222 ---------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 ---------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG--TTELFDTVLYATGRKPD 279 (499)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC--CEEEcCEEEEeeCCCCC
Confidence 0011123345566788888774 22232 23455665666 56899999999999985
No 367
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.74 E-value=0.0003 Score=71.33 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (477)
..+++|||||+.|+.+|..+... |.+|+|+++.+.+... +
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------~ 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------F 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-------------------------------------c
Confidence 36899999999999999876654 8999999985443100 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
+ ..+...+...+++.+++++.+. +..+. .....+.+.++ .++.+|.+++|+|.+|.
T Consensus 230 d------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 230 D------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG--KTLDVDVVMMAIGRVPR 289 (486)
T ss_pred C------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--CEEEcCEEEEeeCCCcC
Confidence 0 0011223345566788888764 44443 22245555555 57999999999999985
No 368
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.74 E-value=0.00019 Score=71.12 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCCeeEEEcccHHHHHHHHHHH-HcCCcEEEEEeCCCcCC-------CCC---HHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWA-RLGSEVTVVEFAADIVP-------SMD---GEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~~-------~~~---~~~~~~~~~~l~~~gv~~~~~~~v~~i 281 (477)
.+++|+|||+|+.|+.+|..|. +.|.+|+++++.+.+.. ... +.+...+.+.+...++++..+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 4789999999999999999764 67999999999988732 111 23444455556667788774433321
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
.+++ +.....+|.||+|+|..+.
T Consensus 117 -------Dvt~------eeL~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 -------DLKM------EELRNHYNCVIFCCGASEV 139 (506)
T ss_pred -------ccCH------HHHHhcCCEEEEEcCCCCC
Confidence 1111 1123378999999998864
No 369
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.74 E-value=4.2e-05 Score=80.69 Aligned_cols=42 Identities=36% Similarity=0.597 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
....+|+|||||++|++||+.|.+.|++|+|+|+++.+||..
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 456899999999999999999999999999999999998864
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00096 Score=66.79 Aligned_cols=135 Identities=25% Similarity=0.335 Sum_probs=83.6
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcCC----------------------CCC----------HHHHHHH
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVP----------------------SMD----------GEIRKQF 261 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~----------------------~~~----------~~~~~~~ 261 (477)
.+++|||+|++|+-+|..|++.|.. +.++++++.+.. .++ .++...+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5799999999999999999999998 999999864321 000 1267777
Q ss_pred HHHHHhcCcE--EEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCCccccceeecCCCC
Q 011787 262 QRSLEKQKMK--FMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLGLDKIGVETDKMGR 335 (477)
Q Consensus 262 ~~~l~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~l~~~~~gl~~~~~g~ 335 (477)
.+.+++.++. +..++.|..+..++ +...+++.. .+..+ +.+|.||+|+|.- |+... -.|++.- .|.
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~--~~~~~-~~a~~vV~ATG~~~~P~iP~----~~G~~~f-~g~ 160 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD--GGTGE-LTADFVVVATGHLSEPYIPD----FAGLDEF-KGR 160 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC--CCeee-EecCEEEEeecCCCCCCCCC----CCCccCC-Cce
Confidence 7788776644 33445555555544 355566542 11222 7899999999963 33322 1222221 232
Q ss_pred eecC----CCCCCCCCCeEEecccCC
Q 011787 336 IPVN----ERFATNIPGVYAIGDVIP 357 (477)
Q Consensus 336 i~vd----~~l~t~~~~vya~GD~~~ 357 (477)
+.=. +..+-.-++|-+||--++
T Consensus 161 ~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 161 ILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred EEchhcCCCccccCCCeEEEECCCcc
Confidence 2211 123345678999996653
No 371
>PLN02612 phytoene desaturase
Probab=97.73 E-value=5.3e-05 Score=78.35 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=39.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
.....+|+|||||++|++||++|.+.|++|+|+|+++.+||.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 33457999999999999999999999999999999999999654
No 372
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.73 E-value=3.9e-05 Score=77.69 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=37.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
+|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999997543
No 373
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.73 E-value=0.00038 Score=70.68 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=64.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (477)
.+++|||||+.|+.+|..|++.|.+|+|+++. .+ .|. . +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---------l~~-----~-----------------------d--- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL---------LRG-----F-----------------------D--- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc---------ccc-----c-----------------------C---
Confidence 57999999999999999999999999999872 21 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEecCCc-eEEEEecEEEEccCCCCC
Q 011787 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGG-NTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~~g~-~~~i~~d~lvlAtG~~~~ 189 (477)
......+.+.+++.+++++.+. +..+. .....+...++. ..++.+|.+++|+|.+|.
T Consensus 220 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 ---------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 0011223345667789888774 22332 234445544442 247999999999999885
No 374
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.73 E-value=0.00041 Score=68.65 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----CC-------------------------C-----------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----SM-------------------------D----------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----~~-------------------------~----------- 254 (477)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. .+ +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 489999999999999999999999999997653210 00 0
Q ss_pred ----HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 ----GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ----~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+.+.+.|++++ ..++..+..+ ++.+.+++. ++.++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~-----~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCA-----GGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeC-----CCCEEEeCEEEECCCCch
Confidence 1233444555566788886 5578888766 445555543 446899999999999887
No 375
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.73 E-value=0.00056 Score=67.79 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=76.5
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------CCC-----------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------SMD----------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------~~~----------------------- 254 (477)
.|+|||+|+.|.-+|..|++.|.+|.++++.+.+.. .+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 699999999999999999999999999999775421 011
Q ss_pred ----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 255 ----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 ----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
..+-+++.+..++.|++++.+++++.+..+++++.+.+.. +..++.++.||.|.|...
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRA----GDDEVRAKVVIDADGVNS 152 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEc----CCEEEEcCEEEECCCcch
Confidence 1344556677788899999999999999888777665542 227899999999999543
No 376
>PRK07538 hypothetical protein; Provisional
Probab=97.72 E-value=3.8e-05 Score=76.67 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=32.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
+||+|||||+||+++|..|++.|++|+|+|+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999997654
No 377
>PLN02487 zeta-carotene desaturase
Probab=97.72 E-value=5.8e-05 Score=77.39 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=38.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
.+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 346999999999999999999999999999999999998653
No 378
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.71 E-value=0.00049 Score=68.25 Aligned_cols=99 Identities=19% Similarity=0.383 Sum_probs=71.5
Q ss_pred CeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCc---CCCC---------------------C-------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADI---VPSM---------------------D------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~---~~~~---------------------~------------- 254 (477)
-+|+|||+|+.|+-+|..|++. |.+|+++++.... .+.+ +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3699999999999999999998 9999999984210 0000 0
Q ss_pred ----------------------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEc
Q 011787 255 ----------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEA 305 (477)
Q Consensus 255 ----------------------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~ 305 (477)
.++.+.+.+.+.+ .|++++++++++++..+++++.+++. ++..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a 158 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD-----DGETLTG 158 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEe
Confidence 0111223333433 47999999999999877777777664 4467999
Q ss_pred CEEEEeecCCCCC
Q 011787 306 DVVLVSAGRTPFT 318 (477)
Q Consensus 306 D~vi~a~G~~p~~ 318 (477)
|.||.|.|..+..
T Consensus 159 ~~vI~AdG~~S~v 171 (395)
T PRK05732 159 RLLVAADGSHSAL 171 (395)
T ss_pred CEEEEecCCChhh
Confidence 9999999987753
No 379
>PRK06996 hypothetical protein; Provisional
Probab=97.70 E-value=0.00043 Score=68.70 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=75.0
Q ss_pred CeeEEEcccHHHHHHHHHHHHcC----CcEEEEEeCCCcCCC-------CC-----------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLG----SEVTVVEFAADIVPS-------MD----------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g----~~Vtli~~~~~~~~~-------~~----------------------------- 254 (477)
.+|+|||||+.|+-+|..|++.| .+|+++++.+...+. +.
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 91 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG 91 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence 57999999999999999999987 469999986421000 00
Q ss_pred -----------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787 255 -----------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (477)
Q Consensus 255 -----------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a 311 (477)
..+.+.+.+.+++.|+++..++++++++.+++++.+++.+. +.++++.+|+||-|
T Consensus 92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~--~g~~~i~a~lvIgA 169 (398)
T PRK06996 92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTP--QGARTLRARIAVQA 169 (398)
T ss_pred CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCC--CcceEEeeeEEEEC
Confidence 24556667777888999999999999988888888776421 11268999999999
Q ss_pred ecCC
Q 011787 312 AGRT 315 (477)
Q Consensus 312 ~G~~ 315 (477)
.|..
T Consensus 170 DG~~ 173 (398)
T PRK06996 170 EGGL 173 (398)
T ss_pred CCCC
Confidence 9963
No 380
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.70 E-value=0.00038 Score=67.38 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=74.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
...|+++|+|..|+-+|..|...+++|++|++.+.+ .|. .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------~~~--------l----------------------- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------LPR--------L----------------------- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------hhh--------h-----------------------
Confidence 567999999999999999999999999999984321 111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEE-e----cCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-I----SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~----~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
....+.+.++.++++++|+++.+++.. + +.+...|.+.+| .++.+|.||+.+|.+|..
T Consensus 253 --------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 253 --------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNT 315 (478)
T ss_pred --------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--CEeccCeEEEeecccccc
Confidence 012244556778889999999986532 2 234567788888 899999999999999953
No 381
>PRK13748 putative mercuric reductase; Provisional
Probab=97.68 E-value=0.00046 Score=71.86 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=64.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+.+|..|.+.|.+|+|+++...+ |. . +
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----------~~-----~-----------------------d-- 309 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----------FR-----E-----------------------D-- 309 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----------cc-----c-----------------------C--
Confidence 358999999999999999999999999999873211 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
..+...+...+++.+++++.+ .+..+. ...+.+.+.++ ++.+|.+++|+|.+|..
T Consensus 310 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 ----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG---ELRADKLLVATGRAPNT 367 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC---eEEeCEEEEccCCCcCC
Confidence 001122334556678888876 344442 33445554443 58999999999999863
No 382
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.68 E-value=0.00011 Score=77.32 Aligned_cols=91 Identities=26% Similarity=0.316 Sum_probs=68.2
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.+...+.+++.|+++++++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 46899999999999999999999999999999887641 2 2355666666778888999999887542 1
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
.+.+. .....+|.|++|+|..+.
T Consensus 269 -----dv~~~------~~~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -----DITLE------ELQKEFDAVLLAVGAQKA 291 (652)
T ss_pred -----ccCHH------HHHhhcCEEEEEcCCCCC
Confidence 11111 112348999999998764
No 383
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.67 E-value=5.6e-05 Score=73.67 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~ 78 (477)
.||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999976544
No 384
>PTZ00058 glutathione reductase; Provisional
Probab=97.67 E-value=0.00047 Score=70.89 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=64.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+..|..|++.|.+|+|+++.+.+. |. ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------~~----------------------------~d-- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------RK----------------------------FD-- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------cc----------------------------CC--
Confidence 4689999999999999999999999999999854321 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..+...+...+++.+++++.+. +..++. ..+.+...++ ..++.+|.|++|+|.+|.
T Consensus 278 ----------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 278 ----------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG-RKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC-CEEEECCEEEECcCCCCC
Confidence 0011112344566788887764 344432 1244443333 257999999999998875
No 385
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.66 E-value=0.00015 Score=78.35 Aligned_cols=90 Identities=27% Similarity=0.272 Sum_probs=65.4
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 284 (477)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+. | .++.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 5789999999999999999999999999999876542 2 1244555555667778899998774210
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 285 ~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
+.+. +.....+|.|++|+|..+..
T Consensus 612 -----~~ve-----~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -----LTVA-----ELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -----eEhh-----hhhcccccEEEECCCCCCCC
Confidence 1111 12345689999999987543
No 386
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.64 E-value=8.1e-05 Score=71.84 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=37.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceeec
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (477)
...+|||||||.||++||.+|.+.| .+++|+|..+++||....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 3468999999999999999999876 579999999999997543
No 387
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.64 E-value=0.00077 Score=68.91 Aligned_cols=95 Identities=20% Similarity=0.354 Sum_probs=66.1
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC-Cc--CC---C---------------C--------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DI--VP---S---------------M-------------------- 253 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~--~~---~---------------~-------------------- 253 (477)
-.|+|||||+.|+++|..+++.|.+|.+++++. .+ ++ . +
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999999873 11 00 0 0
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787 254 -------------DG-EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 254 -------------~~-~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
|. .+...+.+.+++. |++++ ...+.++..+++.+. +.+. ++..+.|+.||+|+|..
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~-----dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQ-----DGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEEC-----CCCEEECCEEEEeeCcc
Confidence 00 0123333444444 78875 567888776666654 5443 45789999999999953
No 388
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.62 E-value=0.00015 Score=76.19 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .+++++.+...+.+++.|+++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47899999999999999999999999999999888642 1 35667777677888899999999886631
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
.+.+. .....+|.|++|+|..+.
T Consensus 386 -----~~~~~------~l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -----DITFS------DLTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -----cCCHH------HHHhcCCEEEEeCCCCCC
Confidence 11111 123468999999998653
No 389
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.62 E-value=0.00051 Score=67.40 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCcEE------EEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC--C-eEE--EEE
Q 011787 224 YIGLEMGSVWARLGSEVT------VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG--D-GVK--LTL 292 (477)
Q Consensus 224 ~~g~e~a~~l~~~g~~Vt------li~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~-~~~--v~~ 292 (477)
.+++|+-..+.++=..+. -+.+.. . .--+.+..-+.+.|+++||+|.++++|+.++-+. + ++. +++
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~--Y-NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~ 249 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTK--Y-NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHI 249 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCc--c-ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEE
Confidence 578898888877632221 111111 1 1124677788999999999999999999987642 2 222 333
Q ss_pred eecCCCceEEEE---cCEEEEeecCCCCC
Q 011787 293 EPAAGGEKTILE---ADVVLVSAGRTPFT 318 (477)
Q Consensus 293 ~~~~~~~~~~i~---~D~vi~a~G~~p~~ 318 (477)
. .+|..+.++ -|+|++..|..-..
T Consensus 250 ~--~~g~~~~i~l~~~DlV~vT~GS~t~~ 276 (500)
T PF06100_consen 250 E--QDGKEETIDLGPDDLVFVTNGSMTEG 276 (500)
T ss_pred E--cCCCeeEEEeCCCCEEEEECCccccc
Confidence 2 333444443 68899988865443
No 390
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.61 E-value=0.00056 Score=68.33 Aligned_cols=97 Identities=15% Similarity=0.262 Sum_probs=68.7
Q ss_pred eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcCCC-----CCH-------------HH-------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPS-----MDG-------------EI------------------- 257 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~-----~~~-------------~~------------------- 257 (477)
+|+|||||+.|+-+|..|++.| .+|+++++.+.+.+. +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999988764210 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787 258 ----------------------RKQFQRSLEKQ--KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 258 ----------------------~~~~~~~l~~~--gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
...+.+.|.+. ...++++++|++++.+++++.+.+. ++.++++|.||.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vVgADG 156 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT-----DGTEYRCDLLIGADG 156 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc-----CCCEEEeeEEEECCC
Confidence 01112222221 3557788999999877777777765 456899999999999
Q ss_pred CCCC
Q 011787 314 RTPF 317 (477)
Q Consensus 314 ~~p~ 317 (477)
....
T Consensus 157 ~~S~ 160 (414)
T TIGR03219 157 IKSA 160 (414)
T ss_pred ccHH
Confidence 7764
No 391
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.59 E-value=0.00016 Score=76.37 Aligned_cols=90 Identities=29% Similarity=0.423 Sum_probs=67.9
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.|+++++++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999877642 2 24566666667778888999998886621
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+.+. .....+|.|++|+|..+
T Consensus 403 -----~i~~~------~~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 -----DISLE------SLLEDYDAVFVGVGTYR 424 (654)
T ss_pred -----cCCHH------HHHhcCCEEEEeCCCCC
Confidence 01111 11246999999999754
No 392
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.59 E-value=0.00076 Score=66.23 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=71.4
Q ss_pred eeEEEcccHHHHHHHHHH--HHcCCcEEEEEeCCCc--CC-----CCC--------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVW--ARLGSEVTVVEFAADI--VP-----SMD-------------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l--~~~g~~Vtli~~~~~~--~~-----~~~-------------------------------- 254 (477)
.|+|||+|+.|+.+|..+ .+.|.+|.++++.+.. -+ .+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 379999999999999999 7789999999876654 10 000
Q ss_pred ------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 255 ------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 255 ------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
..+.+.+.+.+...| .+..++.|.+|+..++...+.+. ++.++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~-----~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLA-----DGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEEC-----CCCEEEeeEEEECCCcccc
Confidence 234445556666444 45678999999888776666665 5679999999999996654
No 393
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.58 E-value=0.00013 Score=74.06 Aligned_cols=39 Identities=31% Similarity=0.301 Sum_probs=36.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (477)
|||+|||+||+|+++|..|++.|++|++||++...||.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999988887654
No 394
>PLN02546 glutathione reductase
Probab=97.58 E-value=0.00092 Score=68.78 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||+.|+..|..|.+.+.+|+|+++.+.+... ..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~--------------~d------------------------- 292 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG--------------FD------------------------- 292 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc--------------cC-------------------------
Confidence 468999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~ 190 (477)
......+...+++.+|+++.+. +..+. ...+.+...++ ....+|.+++|+|.+|..
T Consensus 293 ----------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g--~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 293 ----------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG--TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe--EEEecCEEEEeeccccCC
Confidence 0011223345667789988763 33332 33344554443 445589999999999853
No 395
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.56 E-value=8.8e-05 Score=76.87 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
.++.+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999964
No 396
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.56 E-value=0.0015 Score=64.68 Aligned_cols=103 Identities=20% Similarity=0.332 Sum_probs=70.6
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC--------------------------------
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------- 254 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~-------------------------------- 254 (477)
..+|+|||||+.|+-+|..|++.|.+|+++++.+...+ .+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 35799999999999999999999999999998874110 000
Q ss_pred ---------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787 255 ---------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (477)
Q Consensus 255 ---------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~ 312 (477)
..+...+.+.+.+.|+.++++.++..+.. +++...+++.. ++...++++|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~--~g~~~~i~adlvIGAD 159 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFER--DGERHRLDCDFIAGCD 159 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEE--CCeEEEEEeCEEEECC
Confidence 01123334445556788888877766643 44455565531 2333479999999999
Q ss_pred cCCCCC
Q 011787 313 GRTPFT 318 (477)
Q Consensus 313 G~~p~~ 318 (477)
|.....
T Consensus 160 G~~S~V 165 (390)
T TIGR02360 160 GFHGVS 165 (390)
T ss_pred CCchhh
Confidence 987754
No 397
>PLN03000 amine oxidase
Probab=97.53 E-value=0.00012 Score=77.37 Aligned_cols=42 Identities=33% Similarity=0.583 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
...+|+|||||++|+.||..|.+.|++|+|+|+++.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 468999999999999999999999999999999999998764
No 398
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.52 E-value=0.00032 Score=71.41 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=63.7
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~ 292 (477)
.+++++|+|+|.+|+++|..|++.|.+|+++++.+. +....+.+.+++.|++++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence 367899999999999999999999999999986642 334455667888899998765432
Q ss_pred eecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 293 EPAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 293 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
....+|.||+++|..|+.+.
T Consensus 75 --------~~~~~D~Vv~s~Gi~~~~~~ 94 (480)
T PRK01438 75 --------LPEDTDLVVTSPGWRPDAPL 94 (480)
T ss_pred --------ccCCCCEEEECCCcCCCCHH
Confidence 02348999999999999874
No 399
>PRK11445 putative oxidoreductase; Provisional
Probab=97.52 E-value=0.002 Score=62.70 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=70.1
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C-------CCCH-------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-------SMDG------------------------------- 255 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~-------~~~~------------------------------- 255 (477)
+|+|||+|+.|+-+|..|++. .+|+++++.+... + .+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999876320 0 0000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 256 ------------------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 256 ------------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
++.+.+.+ ..+.|++++.++.+++++.+++++.+++.. ++...++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRA--DGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEec--CCcEEEEEeCEEEECCCCCcH
Confidence 01111112 234689999999999998877777776531 233347999999999998765
Q ss_pred C
Q 011787 318 T 318 (477)
Q Consensus 318 ~ 318 (477)
.
T Consensus 159 v 159 (351)
T PRK11445 159 V 159 (351)
T ss_pred H
Confidence 4
No 400
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.49 E-value=0.0017 Score=58.74 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC------CeEEEEecCCCCCc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGG 80 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g------~~V~lie~~~~~GG 80 (477)
+....+|+|||||..|+.+|+.|.+.+ ..|+|+|+....||
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 344589999999999999999999885 78999999776654
No 401
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.47 E-value=0.0023 Score=63.48 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=66.2
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----CC----------C---------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----SM----------D--------------------------- 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----~~----------~--------------------------- 254 (477)
+|+|||+|+.|.-+|..+++.|.+|.++++.+.+.. .+ +
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999998744210 00 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEeCceEEEEEE---cCCeEEEEEeecC----CCceEEEEcCEEEEeecCCC
Q 011787 255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL---SGDGVKLTLEPAA----GGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 255 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v~~~~~~----~~~~~~i~~D~vi~a~G~~p 316 (477)
..+.+.+.+...+.|++++.++ +..+.. .++...+++.... .+...++.++.||.|+|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 0112234445566789987664 666642 2234445443211 13345899999999999755
Q ss_pred C
Q 011787 317 F 317 (477)
Q Consensus 317 ~ 317 (477)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
No 402
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.46 E-value=0.0001 Score=70.04 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCC
Q 011787 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~-~~~~i~~D~vi~a~G~~p~~~ 319 (477)
....+...++..++++++++.|++|..+ ++++. |++.+.... ....+.++.||+|.|.--...
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~ 261 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPR 261 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChh
Confidence 3455666676669999999999999553 55544 555543332 245788899999999644433
No 403
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.45 E-value=0.001 Score=69.55 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
.+++|||||+.|+..|..|.+.|.+|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 5899999999999999999999999999998554
No 404
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.45 E-value=0.00072 Score=66.16 Aligned_cols=94 Identities=24% Similarity=0.368 Sum_probs=63.3
Q ss_pred eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcCC-----CCCHHHH----H-------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP-----SMDGEIR----K------------------------- 259 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~-----~~~~~~~----~------------------------- 259 (477)
.|+|||+|+.|+.+|..|++. |.+|.++++.+.+.+ .+..+.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 999999998774422 1111111 0
Q ss_pred ---------HHHHH-HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 260 ---------QFQRS-LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 260 ---------~~~~~-l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.+. +++.+..++++++|.++ +++++.+ . +++++.+|.||.|.|..+..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~-----dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--A-----PGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--C-----CCCEEEeeEEEECCCCCCCc
Confidence 11112 22223346778888888 3444443 3 56799999999999988643
No 405
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.44 E-value=0.002 Score=71.24 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------C---C-HHHHHHHHHHHHhc-CcEEEeCceEEEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------M---D-GEIRKQFQRSLEKQ-KMKFMLKTKVVGV 281 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~---~-~~~~~~~~~~l~~~-gv~~~~~~~v~~i 281 (477)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+... . + .+....+.+.++.. +++++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987655321 1 1 23334455556555 5999999999887
Q ss_pred EEcCCeEE-EE-Eee-------c-CCCceEEEEcCEEEEeecCCCCCCC
Q 011787 282 DLSGDGVK-LT-LEP-------A-AGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 282 ~~~~~~~~-v~-~~~-------~-~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
... +.+. +. ... . .......+.+|.||+|||..|....
T Consensus 243 ~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p 290 (985)
T TIGR01372 243 YDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV 290 (985)
T ss_pred ecC-CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC
Confidence 532 2221 11 000 0 0011236899999999999886543
No 406
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.44 E-value=0.0039 Score=62.62 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-C-----------C--CC------------------------
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-P-----------S--MD------------------------ 254 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-~-----------~--~~------------------------ 254 (477)
..-+|+|||||+.|.-+|..|++.|.+|.++++.+... + . ++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 34579999999999999999999999999999875321 0 0 00
Q ss_pred --------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEc---CCeEEEEEeec----CCCceEEEEcCEEEEeec
Q 011787 255 --------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPA----AGGEKTILEADVVLVSAG 313 (477)
Q Consensus 255 --------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~----~~~~~~~i~~D~vi~a~G 313 (477)
..+.+.+.+..++.|++++.+ .+.+++.. ++.+.+++... ..++..++++|+||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 012223444556678888755 56666532 23455555421 013346899999999999
Q ss_pred CCCC
Q 011787 314 RTPF 317 (477)
Q Consensus 314 ~~p~ 317 (477)
....
T Consensus 197 ~~S~ 200 (450)
T PLN00093 197 ANSR 200 (450)
T ss_pred cchH
Confidence 6553
No 407
>PLN02976 amine oxidase
Probab=97.43 E-value=0.0002 Score=78.73 Aligned_cols=43 Identities=33% Similarity=0.675 Sum_probs=39.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (477)
..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3589999999999999999999999999999999999998654
No 408
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.38 E-value=0.00025 Score=70.48 Aligned_cols=89 Identities=34% Similarity=0.432 Sum_probs=70.8
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++|+|||+|+.|+.+|..|++.|+.||++++.+... | .++.++.+...+.|++.|++|+.++++-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 36899999999999999999999999999999888762 2 35678889999999999999999887641
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
.+++ +...-+.|.|++++|..
T Consensus 199 -----~it~------~~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 -----DITL------EELLKEYDAVFLATGAG 219 (457)
T ss_pred -----cCCH------HHHHHhhCEEEEecccc
Confidence 1111 11234459999999954
No 409
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.38 E-value=0.00022 Score=68.19 Aligned_cols=52 Identities=35% Similarity=0.569 Sum_probs=46.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchh
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~ 92 (477)
.+.||++|||+|+-||.||..|++.|.+|+++|++...||-.+...-+|...
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfK 63 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFK 63 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccc
Confidence 4579999999999999999999999999999999989999888887777543
No 410
>PRK02106 choline dehydrogenase; Validated
Probab=97.38 E-value=0.00021 Score=74.19 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=33.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRG 76 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~ 76 (477)
+...+|+||||||+||+.+|.+|++ .|.+|+|+|+..
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4567999999999999999999999 699999999964
No 411
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.37 E-value=0.0006 Score=70.86 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=66.2
Q ss_pred CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceE-EEE
Q 011787 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKV-VGV 281 (477)
Q Consensus 212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v-~~i 281 (477)
..+++|+|||+|++|+.+|..+++.|.+|+++++.+.+. | .++.+....-.+.+++.|+++..++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 347899999999999999999999999999999876542 1 234455555556677889999888765 322
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
..+ .....+|.|++|+|..+.
T Consensus 215 ~~~---------------~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE---------------QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH---------------HHHhhCCEEEEeeCCCCC
Confidence 111 011248999999998754
No 412
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.36 E-value=0.0031 Score=55.16 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=68.0
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC-------------------------------H
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G 255 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~-------------------------------~ 255 (477)
...++|||+|++|+.+|..|++.|.+|.+++++..+.. .|+ .
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 35699999999999999999999999999998876521 111 1
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEee--c----CCCceEEEEcCEEEEeecCCCCCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEP--A----AGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~--~----~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+....+....-+.|++++....|..+-..+ +++. +.+.. . ..-|...+++..||-|||.....-.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence 233333333334899999999999886665 5655 33321 0 0124568999999999998776543
No 413
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.35 E-value=0.00034 Score=64.30 Aligned_cols=42 Identities=36% Similarity=0.631 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--CCCceee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCL 83 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--~~GG~~~ 83 (477)
..+||+|||+|.||+-||.+|+..|++|+|+|++. .+||+..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 46899999999999999999999999999999865 4787654
No 414
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.35 E-value=0.0031 Score=53.52 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=60.5
Q ss_pred EEEcccHHHHHHHHHHHHc-----CCcEEEEEeCCCc--CC-------------------CC---C-HHHHHHH------
Q 011787 218 VVIGAGYIGLEMGSVWARL-----GSEVTVVEFAADI--VP-------------------SM---D-GEIRKQF------ 261 (477)
Q Consensus 218 ~IiG~G~~g~e~a~~l~~~-----g~~Vtli~~~~~~--~~-------------------~~---~-~~~~~~~------ 261 (477)
+|||+|++|+-++..|.+. ..+|+++++.+.- .+ .+ + .++.+++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5899999999999999877 3478899875431 00 00 0 1122221
Q ss_pred ------------------------HHHHH--hcCcEEE-eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787 262 ------------------------QRSLE--KQKMKFM-LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 262 ------------------------~~~l~--~~gv~~~-~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
.+.++ ..|+++. ...+|+.+...+++..+.+. ++..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~-----~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTA-----DGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEEC-----CCCEEEeCEEEECCCC
Confidence 11111 2354443 25689999988888777665 5678999999999995
No 415
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.32 E-value=0.00024 Score=71.09 Aligned_cols=97 Identities=24% Similarity=0.377 Sum_probs=28.1
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--------C-----------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--------S----------------------------------- 252 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------~----------------------------------- 252 (477)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 489999999999999999999999999998886520 0
Q ss_pred ------CCHH-HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 253 ------MDGE-IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 253 ------~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
++++ ....+.+.+++.|+++++++.+.++..+++++. +.+.+.. ...++.++.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~--g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS--GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence 1111 112244566678999999999999988876665 5554322 2678999999999994
No 416
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.32 E-value=0.0047 Score=63.26 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=72.0
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CC--------------------------------C-
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SM--------------------------------D- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~--------------------------------~- 254 (477)
..|+|||+|..|+-.|..+++.|.+|.++++.+.... .+ +
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 4699999999999999999999999999987654210 00 0
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC
Q 011787 255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD 286 (477)
Q Consensus 255 ------------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 286 (477)
..+...+.+.+++.|++++++++++++..+++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g 221 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG 221 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC
Confidence 01233445556678999999999999987666
Q ss_pred eEE-EEEeecCCCceEEEEcCEEEEeec-CCCC
Q 011787 287 GVK-LTLEPAAGGEKTILEADVVLVSAG-RTPF 317 (477)
Q Consensus 287 ~~~-v~~~~~~~~~~~~i~~D~vi~a~G-~~p~ 317 (477)
++. +.+.. .++....+.++.||+|+| +.+|
T Consensus 222 ~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 222 KVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence 543 44432 222345799999999998 5554
No 417
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.32 E-value=0.0003 Score=66.98 Aligned_cols=40 Identities=38% Similarity=0.509 Sum_probs=35.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCcee
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTC 82 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~ 82 (477)
.++|+|+|||.+||++|++|++++ ..|+|+|..+++||-.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 479999999999999999999995 4577899999999953
No 418
>PRK13984 putative oxidoreductase; Provisional
Probab=97.30 E-value=0.0008 Score=70.61 Aligned_cols=90 Identities=30% Similarity=0.337 Sum_probs=67.4
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 283 (477)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+... + .++.++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 47889999999999999999999999999999877542 1 13445555556778889999999887732
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+ +.+. .....+|.||+|+|..+
T Consensus 359 -~----~~~~------~~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 -D----IPLE------ELREKHDAVFLSTGFTL 380 (604)
T ss_pred -c----CCHH------HHHhcCCEEEEEcCcCC
Confidence 0 1111 12357999999999763
No 419
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.28 E-value=0.002 Score=60.54 Aligned_cols=144 Identities=16% Similarity=0.263 Sum_probs=87.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (477)
..+++|||||.-||..+.--.++|.+|++||--+.+||.. |
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m-------------------------------------D-- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM-------------------------------------D-- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc-------------------------------------C--
Confidence 4689999999999999999999999999999866665531 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEe---cCCceEEEEecEEEEccCCCCCCCCCCc
Q 011787 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDT---IEGGNTVVKGKNIIIATGSDVKSLPGIT 195 (477)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~---~~g~~~~i~~d~lvlAtG~~~~~~~g~~ 195 (477)
.++.+.....+.+.+++|..++ +.... +..+.+.. .+++..++++|.+++|+|-+|.. .|++
T Consensus 252 ----------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t-~GLg 320 (506)
T KOG1335|consen 252 ----------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT-EGLG 320 (506)
T ss_pred ----------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc-cCCC
Confidence 0122223455666788888774 33322 22444443 34566889999999999999852 3443
Q ss_pred cCCceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcC
Q 011787 196 IDEKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLG 237 (477)
Q Consensus 196 ~~~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g 237 (477)
.+...+.. +...+. ...--++-.||--..|.-+|......|
T Consensus 321 le~iGi~~-D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 321 LEKIGIEL-DKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred hhhccccc-ccccceeccccccccCCceEEecccCCcchhhhhhhhhc
Confidence 32222211 111111 111234666665555555555544444
No 420
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.0021 Score=65.58 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
..+++|||+|.+|+++|..|++.|.+|+++|+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 458999999999999999999999999999973
No 421
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.23 E-value=0.0055 Score=62.76 Aligned_cols=96 Identities=23% Similarity=0.396 Sum_probs=64.8
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---C---------------C---C---------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---P---------------S---M--------------------- 253 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~---------------~---~--------------------- 253 (477)
.|+|||+|+.|+++|..+++.|.+|.++++..... + . +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998753210 0 0 0
Q ss_pred ------------CH-HHHHHHHHHHHhc-CcEEEeCceEEEEEEc-CCeE-EEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787 254 ------------DG-EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLS-GDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (477)
Q Consensus 254 ------------~~-~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~-~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~ 317 (477)
|+ .+...+.+.+++. ++.++.+ .+.++..+ ++.+ .+.+. ++..+.||.||+|+|...+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~-----~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ-----DGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEEC-----CCCEEECCEEEEccCcccC
Confidence 00 1123444556655 7888754 66666543 3333 35543 4568999999999997753
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.23 E-value=0.001 Score=71.04 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (477)
Q Consensus 212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~ 246 (477)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35799999999999999999999999999999975
No 423
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.21 E-value=0.00037 Score=74.85 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGA 77 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~ 77 (477)
++|+||||||||+++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3799999999999999999998 899999999765
No 424
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.17 E-value=0.0012 Score=64.01 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=61.8
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCCHH------HHHHHHHHHHhcCcEEEeCceEEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMDGE------IRKQFQRSLEKQKMKFMLKTKVVG 280 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~ 280 (477)
.++++|||||..|++.|..|+..|.+|+++++.+.+.. .|+.. +...+.+.-...+|++++.++|.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 68999999999999999999999999999999987732 12211 222334444556899999999999
Q ss_pred EEEcCCeEEEEEe
Q 011787 281 VDLSGDGVKLTLE 293 (477)
Q Consensus 281 i~~~~~~~~v~~~ 293 (477)
+.+.-+.+++.++
T Consensus 204 v~G~vGnF~vki~ 216 (622)
T COG1148 204 VSGSVGNFTVKIE 216 (622)
T ss_pred ecccccceEEEEe
Confidence 9887777666553
No 425
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0068 Score=61.17 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEEEeCCCcCCCCCH-HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 241 TVVEFAADIVPSMDG-EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 241 tli~~~~~~~~~~~~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+....+- .+|| .+...+....++.|..++.++.|+++....++.. |++. -..+++..++.|+|+..
T Consensus 175 ~Ly~P~DG---~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~------~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDG---VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETP------HGSIETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCc---ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceecc------CcceecceEEechhHHH
Confidence 45544443 2344 4567778888899999999999999987655433 4432 24799999999999654
No 426
>PLN02985 squalene monooxygenase
Probab=97.13 E-value=0.01 Score=60.78 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=30.7
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
..+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3469999999999999999999999999999864
No 427
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.10 E-value=0.00027 Score=60.66 Aligned_cols=38 Identities=45% Similarity=0.608 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG 80 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG 80 (477)
..||+|||+|.||++||+.+.++ +.+|.|||..-.+||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 46999999999999999999855 789999998666664
No 428
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.08 E-value=0.0019 Score=63.47 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.6
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
+|+|||||..|+++|..|++.|.+|+++++++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999987764
No 429
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.08 E-value=0.007 Score=63.09 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
....+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346789999999999999999999999999999865
No 430
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.98 E-value=0.0025 Score=57.19 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=67.1
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------CCC----------HHHHHH---------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SMD----------GEIRKQ--------------- 260 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~~~----------~~~~~~--------------- 260 (477)
+|+|||+|..|+-+|..|+..|.+|++++++.-+.. .+| +-+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 589999999999999999999999999998764421 111 111111
Q ss_pred ---------------------------HHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787 261 ---------------------------FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 261 ---------------------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
+.+.|. ...++.++++|+++...++..+++.++ .+....+|.|++++.
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-tdL~V~~~~rVt~v~~~~~~W~l~~~~----g~~~~~~d~vvla~P 157 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-TDLTVVLETRVTEVARTDNDWTLHTDD----GTRHTQFDDVVLAIP 157 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh-ccchhhhhhhhhhheecCCeeEEEecC----CCcccccceEEEecC
Confidence 112222 245567788888887777777777642 456789999999987
Q ss_pred CCC
Q 011787 314 RTP 316 (477)
Q Consensus 314 ~~p 316 (477)
.-.
T Consensus 158 APQ 160 (331)
T COG3380 158 APQ 160 (331)
T ss_pred CCc
Confidence 533
No 431
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.96 E-value=0.017 Score=60.21 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
+.+++.|++++.++.++++..+++++. +...+..++....+.++.||+|+|-
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 344556899999999999876666554 3332222334457899999999994
No 432
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0078 Score=52.44 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC--------C--------cCCCC-----CHHHHHHHHHHHHhcCcEE
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--------D--------IVPSM-----DGEIRKQFQRSLEKQKMKF 272 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~--------~--------~~~~~-----~~~~~~~~~~~l~~~gv~~ 272 (477)
..+|+|||+|+.+...|..+++...+..+++..- + .+|.| .+++.+.++++-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4689999999999999988888766655554210 0 12333 3688888899989999998
Q ss_pred EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
++ ..|.+++.+..-..+.. +.+.+.+|.||+|+|.....-
T Consensus 88 ~t-EtVskv~~sskpF~l~t------d~~~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 88 IT-ETVSKVDLSSKPFKLWT------DARPVTADAVILATGASAKRL 127 (322)
T ss_pred ee-eehhhccccCCCeEEEe------cCCceeeeeEEEecccceeee
Confidence 84 56777876666665543 457899999999999766443
No 433
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.92 E-value=0.018 Score=60.62 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=36.6
Q ss_pred HHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 264 SLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 264 ~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
.+++.||++++++.++++..+++++. +.+.+..++....+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999999876666554 4443323344457999999999983
No 434
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.91 E-value=0.024 Score=55.12 Aligned_cols=119 Identities=11% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCeEEEEecCCCCC--------ceeeccCccCchhhhh----hhH---------HHHHHHhhhhhCCccccccccChHHH
Q 011787 66 GLKTTCIEKRGALG--------GTCLNVGCIPSKALLH----SSH---------MYHEAMHSFASHGVKFSSVEVDLPAM 124 (477)
Q Consensus 66 g~~V~lie~~~~~G--------G~~~~~~~~p~~~l~~----~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (477)
|.+|+|+|+++.+| |.|.....-+...+.. ... ...+....+.+.|+...... -..+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~--~grv 78 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGS--SGRV 78 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECC--CCEE
Confidence 56899999999886 7887665432211110 011 12345566777787532110 0111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787 125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (477)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~ 188 (477)
++... ....+...+...+++.+|++..+ .+..++.....+.+..+ ...+.+|+||||||+.+
T Consensus 79 fP~S~-~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEM-KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence 11111 12233444556677889999887 45566555566665433 24689999999999864
No 435
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.02 Score=59.45 Aligned_cols=53 Identities=8% Similarity=0.053 Sum_probs=37.3
Q ss_pred HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
+.+.+++.||++++++.++++..+++++. +...+..++....+.++.||+|||
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 44445556899999999999877666655 444333333445789999999998
No 436
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.88 E-value=0.021 Score=57.50 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787 259 KQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
+.+.+.+++.|++++++++++++..++ +++. +.+.. ..+....+.++.||+|+|-.
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCC
Confidence 334455667899999999999998754 3343 44432 22223458899999999943
No 437
>PRK07233 hypothetical protein; Provisional
Probab=96.79 E-value=0.019 Score=57.65 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=31.7
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
+|+|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 5899999999999999999999999999998865
No 438
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.76 E-value=0.017 Score=56.56 Aligned_cols=32 Identities=41% Similarity=0.631 Sum_probs=28.7
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999998754
No 439
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0016 Score=66.89 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCCC
Q 011787 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~-~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
+...++..++.+.+++.++.+..++++.+ +++.....+ .......+.||+|.|...+...
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 33456777899999999999998887665 444432222 2445788899999998776554
No 440
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.72 E-value=0.024 Score=57.45 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.5
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
..|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999988753
No 441
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.67 E-value=0.00087 Score=65.71 Aligned_cols=42 Identities=43% Similarity=0.569 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (477)
..+||+|||||..|..||.-++-+|+++.|||+++.-.|+-.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 359999999999999999999999999999999887777643
No 442
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.67 E-value=0.011 Score=60.70 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=74.4
Q ss_pred CeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCcC-------CCCC-----HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV-------PSMD-----GEIRKQFQRSLEKQKMKFMLKTKVV 279 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~-------~~~~-----~~~~~~~~~~l~~~gv~~~~~~~v~ 279 (477)
.+++|||.|..|..+...+.+.. ..+|++...++.- +.+. .++.-.-.+..+++||+++++.+++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 57999999999999998888743 4688886555431 1222 2333334567889999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC
Q 011787 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL 321 (477)
Q Consensus 280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l 321 (477)
.|+..+..+... .+.++.+|.+|+|||..|+....
T Consensus 84 ~idr~~k~V~t~-------~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 84 QIDRANKVVTTD-------AGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EeccCcceEEcc-------CCcEeecceeEEecCccccccCC
Confidence 997665444332 67899999999999999988753
No 443
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.65 E-value=0.038 Score=57.76 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=27.5
Q ss_pred eEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 217 v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999998766
No 444
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.032 Score=58.20 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=37.9
Q ss_pred HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+.+.+++.||++++++.++++..+++.+. +......++....+.++.||+|+|-..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 44455667899999999999876665543 332222334445789999999999643
No 445
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.0047 Score=61.11 Aligned_cols=93 Identities=19% Similarity=0.348 Sum_probs=61.8
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc---CCCCC-------------------------------------
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---VPSMD------------------------------------- 254 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---~~~~~------------------------------------- 254 (477)
-.|+|||||+.|+|.|...++.|.++.+++.+..- ++.-+
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 36899999999999999999999998887755432 11111
Q ss_pred ---------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCC-eEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 255 ---------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGD-GVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 255 ---------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
......+++.++. .++.++ ...|.++..+++ .+. +.+. +|..+.|+.||++||
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~-----~G~~~~a~aVVlTTG 155 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTA-----DGPEFHAKAVVLTTG 155 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeC-----CCCeeecCEEEEeec
Confidence 1123334444443 366665 445556555444 344 4443 678999999999999
No 446
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.61 E-value=0.042 Score=57.79 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.7
Q ss_pred cEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 270 MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 270 v~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
|+++.++.++++..+++.+. +......++....+.++.||+|+|-
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 88888888888876555443 2222223344457999999999994
No 447
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.61 E-value=0.0036 Score=44.58 Aligned_cols=32 Identities=38% Similarity=0.461 Sum_probs=29.0
Q ss_pred EEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (477)
Q Consensus 219 IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 250 (477)
|||+|.+|+.+|..|++.|.+|+++++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 79999999999999999999999999998763
No 448
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.59 E-value=0.041 Score=56.18 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787 259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 259 ~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
..+.+.+++ .||++++++.++++..+++.+. +.+.+. +....+.++.||+|+|-.
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR--ETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC--CcEEEEEcCEEEECCCcc
Confidence 334445555 5899999999999876665554 444321 233578999999999853
No 449
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.57 E-value=0.011 Score=56.23 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCeE-EEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQL----GLKT-TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~----g~~V-~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~ 116 (477)
.+..|.|||+|+-|...|+.|++. |.+| .|++....
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------------------------------------- 386 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------------------------------------- 386 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC---------------------------------------
Confidence 356899999999999999999875 4444 34433110
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEE--ecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (477)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~ 189 (477)
..++++ +.+.++..+..++.||+++.+. +.. .+...+.+.++|| .+++.|.||+|+|..|.
T Consensus 387 ----m~kiLP------eyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG--~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 387 ----MEKILP------EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDG--SELRTDLVVVAVGEEPN 450 (659)
T ss_pred ----hhhhhH------HHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCC--CeeeeeeEEEEecCCCc
Confidence 000000 1122333455667788887663 322 3456778889999 89999999999999985
No 450
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.57 E-value=0.012 Score=56.66 Aligned_cols=104 Identities=18% Similarity=0.321 Sum_probs=61.4
Q ss_pred eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcC--CC--CC------------------------------------
Q 011787 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIV--PS--MD------------------------------------ 254 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~--~~--~~------------------------------------ 254 (477)
.++.||.|+..+.+|..+...+ .++.++++.+.+. |. ++
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 7888999877651 10 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe----EEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787 255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (477)
Q Consensus 255 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~----~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 319 (477)
.+..+.++-..++..-.+..+++|++|+..++. ..|++.+ .++++..+.|+.|++++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCCCCC
Confidence 122233322333334337779999999876543 5566654 556788999999999999998875
Q ss_pred C
Q 011787 320 G 320 (477)
Q Consensus 320 ~ 320 (477)
.
T Consensus 163 ~ 163 (341)
T PF13434_consen 163 E 163 (341)
T ss_dssp G
T ss_pred c
Confidence 4
No 451
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.55 E-value=0.05 Score=57.00 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHhcC-cEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 263 RSLEKQK-MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 263 ~~l~~~g-v~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
+.+++.+ |+++.++.+.++..+++++. +...+..++....+.++.||+|+|
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence 3444554 99999999999876555543 322222233345799999999999
No 452
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.53 E-value=0.0023 Score=66.03 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEecCC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG 76 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~ 76 (477)
|+||||||.||+.+|.+|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999997 7999999964
No 453
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.47 E-value=0.049 Score=56.39 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
+...+.+.+++.||++++++.++++..++++ +. +......++....+.++.||+|||-
T Consensus 136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 4444555566679999999999998766554 43 3333223344457999999999984
No 454
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.46 E-value=0.058 Score=56.27 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=32.0
Q ss_pred cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
.||+++.++.+.++..+++.+. +...+..++....+.++.||+|+|-.
T Consensus 151 ~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 151 DNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred CCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 5788888888888866555543 33222223333478999999999843
No 455
>PLN02785 Protein HOTHEAD
Probab=96.45 E-value=0.0033 Score=65.21 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~ 76 (477)
..||+||||||.||+.+|.+|.+ +.+|+|+|+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 46999999999999999999999 58999999953
No 456
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.43 E-value=0.047 Score=50.88 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCcEEEeCceEEEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787 258 RKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (477)
Q Consensus 258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 318 (477)
.+.++..+++.|+.|+.+..++.+... +..+.+.++ ++..+.++.+|+++|..-|.
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-----~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-----DGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEec-----cCCeeecceEEEEecHHHHh
Confidence 344567788899999999999887632 233444443 66789999999999965443
No 457
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.41 E-value=0.011 Score=63.62 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=31.1
Q ss_pred eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCc
Q 011787 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI 249 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~ 249 (477)
+|+|||||+.|+-+|..|++. |.+|+++++.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 689999999999999999998 8899999998753
No 458
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.36 E-value=0.067 Score=56.53 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
+.+.+.||+++.++.++++..+++++. +.+.+..++....+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 345567899999999999887666543 444433345556788999999998
No 459
>PRK08275 putative oxidoreductase; Provisional
Probab=96.35 E-value=0.074 Score=55.23 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
.+.+.+.+.+++.|++++.++.++++..+ ++++. +...+..++....+.++.||+|+|-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 34556666677789999999999999765 44443 333222334445789999999999654
No 460
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.34 E-value=0.067 Score=53.65 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 257 IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 257 ~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+.+.+.+.+++ .||++++++.++++..+++++. +.... +++...+.++.||+|+|--.
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK--DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence 33444555544 4999999999999876666543 33221 22334789999999999643
No 461
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.30 E-value=0.081 Score=55.52 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEE-cCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDL-SGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
.+.+..++.||+++.++.++++.. +++++. +...+..++....+.++.||+|||
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 334445556888888888888765 445444 433333345556889999999997
No 462
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.26 E-value=0.0039 Score=57.13 Aligned_cols=39 Identities=33% Similarity=0.513 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG 79 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~G 79 (477)
...||+||||||..|++.|.+|.-+ +.+|.|+|++..++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3579999999999999999998765 89999999987765
No 463
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.052 Score=54.87 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
..+++|+|+|..|+++|..|++.|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999983
No 464
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.22 E-value=0.086 Score=54.53 Aligned_cols=33 Identities=39% Similarity=0.495 Sum_probs=27.5
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 468899999999888888888888888887755
No 465
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.18 E-value=0.12 Score=53.82 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.6
Q ss_pred cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
.+|+++.++.++++..+++++. +...+..++....+.++.||+|+|
T Consensus 146 ~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATG 192 (580)
T ss_pred CCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence 3688888888888776666554 332222344456799999999998
No 466
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.13 E-value=0.033 Score=53.48 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=32.1
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
.+|+|||||..|+-.|..|.+.|.+|.+++.+..+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 57999999999999999999999999999987654
No 467
>PTZ00367 squalene epoxidase; Provisional
Probab=96.09 E-value=0.049 Score=56.27 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
..+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3479999999999999999999999999999875
No 468
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.02 E-value=0.14 Score=53.36 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCeecCCCCCCCCCCeEEecccCC-CC--------CchhHHHHHHHHHHHHHcC
Q 011787 334 GRIPVNERFATNIPGVYAIGDVIP-GP--------MLAHKAEEDGVACVEFLAG 378 (477)
Q Consensus 334 g~i~vd~~l~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~~ 378 (477)
|+|.||.+.+|++||+||+|+|++ +. .....|...|++|++++..
T Consensus 359 GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 359 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred CCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 778888888899999999999864 21 1234566678888888764
No 469
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.01 E-value=0.0089 Score=56.99 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC----CCeEEEEecC--CCCCc
Q 011787 41 SDENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKR--GALGG 80 (477)
Q Consensus 41 ~~~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~--~~~GG 80 (477)
...+||+|+||||.|.+.|..|... .++|.|+|-. +.+++
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 3479999999999999999999965 5799999986 44543
No 470
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.95 E-value=0.14 Score=53.83 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 263 RSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 263 ~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
+...+.||+++.++.++++..+ ++++. +...+..++....+.++.||+|||-
T Consensus 195 ~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 195 GQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 3344568888888888887654 44443 4433333445568899999999984
No 471
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.94 E-value=0.009 Score=60.53 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCC
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG 76 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~ 76 (477)
....||.+|||||.||+..|.+|.+. ..+|+|+|+..
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 45679999999999999999999998 68999999954
No 472
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.93 E-value=0.16 Score=53.06 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 265 LEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 265 l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
.++.|++++.++.++++..+ ++++. +...+..++....+.++.||+|||-
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 34567888888888887764 44444 3332333445567899999999983
No 473
>PLN02815 L-aspartate oxidase
Probab=95.88 E-value=0.12 Score=53.74 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=30.4
Q ss_pred cCcEEEeCceEEEEEEcC-Ce---E-EEEEeecCCCceEEEEcCEEEEeec
Q 011787 268 QKMKFMLKTKVVGVDLSG-DG---V-KLTLEPAAGGEKTILEADVVLVSAG 313 (477)
Q Consensus 268 ~gv~~~~~~~v~~i~~~~-~~---~-~v~~~~~~~~~~~~i~~D~vi~a~G 313 (477)
.||+++.++.++++..++ ++ + -+...+..++....+.++.||+|||
T Consensus 169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 378888888888876542 32 2 2433333344446789999999998
No 474
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.026 Score=52.59 Aligned_cols=98 Identities=16% Similarity=0.301 Sum_probs=74.4
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEE-eC-CCcC-----------C-CCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE-FA-ADIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~-~~-~~~~-----------~-~~~~~~~~~~~~~l~~~gv~~~~~~~v 278 (477)
.+-.|+|||||+.|...|-+.++.|.+.-++. |- .+.+ | .-.+.+...++++.++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 36689999999999999988888876544331 11 1111 1 234788899999999999999988888
Q ss_pred EEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787 279 VGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (477)
Q Consensus 279 ~~i~~~---~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 315 (477)
+.+++. ++-+.+++. ++-.+++..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~-----nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELA-----NGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEec-----CCceeccceEEEecCcc
Confidence 888764 345667776 77899999999999955
No 475
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.82 E-value=0.13 Score=52.76 Aligned_cols=46 Identities=35% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCeecCCCCCCCCCCeEEecccCC-CC----Cc----hhHHHHHHHHHHHHHcCC
Q 011787 334 GRIPVNERFATNIPGVYAIGDVIP-GP----ML----AHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 334 g~i~vd~~l~t~~~~vya~GD~~~-~~----~~----~~~A~~~g~~aa~~i~~~ 379 (477)
|+|.||.+.+|++||+||+|+|++ +. .+ ...+...|+.|++++...
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 778899999999999999999973 22 12 234566678888888643
No 476
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.80 E-value=0.22 Score=52.07 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=29.4
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~ 247 (477)
..|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 469999999999999999999999999998543
No 477
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.15 Score=50.18 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=28.6
Q ss_pred CeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCc
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADI 249 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~ 249 (477)
.+|+|||+|++|+.+|..|.+.- ..|++++..+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998762 238888887765
No 478
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.64 E-value=0.22 Score=51.99 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCcEEEeCceEEEEEEcC----CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSG----DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (477)
Q Consensus 257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~----~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p 316 (477)
+...+.+.+++.||+++.++.++++..++ +++. +...+..++....+.++.||+|||-..
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 34455666677899999999999987554 4443 333222333445789999999999543
No 479
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.62 E-value=0.014 Score=57.63 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (477)
Q Consensus 40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (477)
|..+|||||+|-|..-.-.|..|.+.|.+|+-+|+++.-||.|...
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 3457999999999999999999999999999999999999987543
No 480
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.044 Score=55.41 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=56.7
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEe
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~ 293 (477)
.++++|+|+|.+|+.+|..|++.|.+|+++++... ..+ +...+.+.+.|++++.+....+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~------------- 64 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE------------- 64 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh-------------
Confidence 68999999999999999999999999999977541 122 2223445666777654332210
Q ss_pred ecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787 294 PAAGGEKTILEADVVLVSAGRTPFTAG 320 (477)
Q Consensus 294 ~~~~~~~~~i~~D~vi~a~G~~p~~~~ 320 (477)
..-.+|.||.++|..|+...
T Consensus 65 -------~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 65 -------FLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred -------HhhcCCEEEECCCCCCCCHH
Confidence 11247999999998877653
No 481
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.56 E-value=0.18 Score=50.66 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 258 RKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
.+.+.+.+++.|++++++++++++..+ ++.+. +... ++...+.++.||+|+|-
T Consensus 126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~----~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 126 TNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT----VGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc----CCcEEEEcCEEEEcCCC
Confidence 344455567779999999999998765 34333 3322 13368999999999993
No 482
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.069 Score=52.08 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=28.4
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~ 246 (477)
-.|+|||||..|+|.|...++.|.+.++++.+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 46999999999999999999999988877644
No 483
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.44 E-value=0.022 Score=55.88 Aligned_cols=35 Identities=34% Similarity=0.370 Sum_probs=32.2
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
++|+|||||+.|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976655
No 484
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.20 E-value=0.18 Score=49.08 Aligned_cols=83 Identities=18% Similarity=0.345 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcCCC--CCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEE
Q 011787 227 LEMGSVWARLGSEVTVVEFAADIVPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE 304 (477)
Q Consensus 227 ~e~a~~l~~~g~~Vtli~~~~~~~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~ 304 (477)
-++...+.+.|.... .+++.++.|. -..++.+.+...+++.||+++++++|++| ++++..+.+.. ++..+.
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~----~~~~~~ 129 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPD----GQSTIE 129 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECC----CceEEe
Confidence 355667777776433 4556677763 34578888999999999999999999999 33445555431 234699
Q ss_pred cCEEEEeecCCC
Q 011787 305 ADVVLVSAGRTP 316 (477)
Q Consensus 305 ~D~vi~a~G~~p 316 (477)
+|.||+|+|-.+
T Consensus 130 a~~vIlAtGG~s 141 (376)
T TIGR03862 130 ADAVVLALGGAS 141 (376)
T ss_pred cCEEEEcCCCcc
Confidence 999999999754
No 485
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.17 E-value=0.13 Score=50.71 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=28.7
Q ss_pred eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
.|+|||+|..|+-+|..|.+. .+|+++++.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 699999999999999999887 789999887643
No 486
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.16 E-value=0.38 Score=49.75 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCeecCCCCCCCCCCeEEecccCC-CCC--------chhHHHHHHHHHHHHHcCC
Q 011787 334 GRIPVNERFATNIPGVYAIGDVIP-GPM--------LAHKAEEDGVACVEFLAGK 379 (477)
Q Consensus 334 g~i~vd~~l~t~~~~vya~GD~~~-~~~--------~~~~A~~~g~~aa~~i~~~ 379 (477)
|+|.||.+.||++||+||+|+|+. +.. ....|...|++|++++...
T Consensus 354 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 354 GGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred CCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 778889999999999999999873 221 2345667788899888643
No 487
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.03 E-value=0.37 Score=50.30 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcC-EEEEeecC
Q 011787 264 SLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEAD-VVLVSAGR 314 (477)
Q Consensus 264 ~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~ 314 (477)
..++.|+++++++.++++..+ ++++. +... .++....+.++ .||+|+|-
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~--~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVE--REGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCCcEEEEEEE--eCCcEEEEEeceeEEEecCc
Confidence 345668999999999999875 34444 4443 23444568887 59999873
No 488
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.027 Score=52.22 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (477)
Q Consensus 44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~ 77 (477)
..|-|||||.||..||+++++.|.+|.|.|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5689999999999999999999999999997543
No 489
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.96 E-value=0.045 Score=54.34 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.8
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 67999999999999999999999999999998765
No 490
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.94 E-value=0.032 Score=47.32 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
+|.|||||..|.++|..|+++|++|+|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 5899999999999999999999999999873
No 491
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.94 E-value=0.049 Score=54.37 Aligned_cols=36 Identities=17% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 357999999999999999999999999999998764
No 492
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.89 E-value=0.024 Score=44.14 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
+..+|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3578999999999999999999999999999883
No 493
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.88 E-value=0.57 Score=48.69 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCC
Q 011787 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTP 316 (477)
Q Consensus 260 ~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~~p 316 (477)
.+.+.+++.|++++++++++++..+++++. +.... ++....+.++ .||+|+|--.
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVR--DGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEE--CCeEEEEEecceEEEecCCcc
Confidence 334556667889999999999877666554 44432 3344568884 6999987433
No 494
>PRK06184 hypothetical protein; Provisional
Probab=94.85 E-value=0.046 Score=56.09 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=32.9
Q ss_pred CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (477)
Q Consensus 215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 250 (477)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~ 39 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF 39 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 469999999999999999999999999999987653
No 495
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.82 E-value=0.026 Score=56.43 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787 262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 262 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
.......|.+++++++|++|+.+++++.+++. +++++.+|.||+|+..
T Consensus 216 ~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~-----~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 216 ALAAEELGGEIRLNTPVTRIEREDGGVTVTTE-----DGETIEADAVISAVPP 263 (450)
T ss_dssp HHHHHHHGGGEESSEEEEEEEEESSEEEEEET-----TSSEEEESEEEE-S-H
T ss_pred HHHHhhcCceeecCCcceeccccccccccccc-----cceEEecceeeecCch
Confidence 33444456799999999999999999998876 5569999999999873
No 496
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.76 E-value=0.051 Score=48.24 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (477)
Q Consensus 43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~ 75 (477)
..+|+|||||..|...+..|.+.|.+|+|++++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999873
No 497
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.72 E-value=0.053 Score=53.77 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 250 (477)
+.+|+|||||+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 4689999999999999999999999999999987653
No 498
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.72 E-value=0.29 Score=50.74 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHh-cCcEEEeCceEEEEEEcC--CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787 261 FQRSLEK-QKMKFMLKTKVVGVDLSG--DGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (477)
Q Consensus 261 ~~~~l~~-~gv~~~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~ 314 (477)
+.+.+++ .||+++.++.++++..++ +.+. +.... ++....+.++.||+|||-
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 3344433 378888888887776542 3333 33321 233345889999999984
No 499
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.69 E-value=0.041 Score=55.73 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=35.1
Q ss_pred CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (477)
Q Consensus 213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~ 250 (477)
..++|+|||+|.+|+.+|..|...|.+|++++.++++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 35789999999999999999999999999999998874
No 500
>PRK06847 hypothetical protein; Provisional
Probab=94.68 E-value=0.064 Score=52.71 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.2
Q ss_pred CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (477)
Q Consensus 214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~ 249 (477)
.++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468999999999999999999999999999988754
Done!