Citrus Sinensis ID: 011788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGSSSNQENSSTSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSELSSQPSKRPRTEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccccccccccccHccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccc
Coil and Loop (DISEMBL)
mearplsiqrSSARQlnnlgvsgpmssslsvlptpledtysklpnsqqvymeqelrtrplapaphipansgvvghifssssglssdlqyssaspheklprttsfisqsstpipqtshsglpqsstsshytkesssswcpeslpgyvdfaantpvqnsqmegsscsgaivseefskrndwhewadqlitdddplgsswneILADtsmtemepkmsyqvpktptsmpahrtqvhqqlpassteirtvvtpsasannapakprmrwtpELHEAFVEAVNQlggseratpkGVLKLMKVEGLTIYHVKSHLQKYrtaryrpdssegssekrltpleeissldLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSgidmlkgsssnqensstslakselegtqvdhdkkgsdtananstneessqpkeldgkqkapeteapenaelnvselssqpskrprtee
Flexible Loop (DISEMBL)
mearplsiqrssARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQlitdddplgssWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHqqlpassteirtvvtpsasannapakprMRWTPELHEAFVEAVNqlggseratpkGVLKLMKVEGLTIYHVkshlqkyrtaryrpdssegssekrltpleeissldlkTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGSSSNQENSSTSLAKselegtqvdhdkkgsdtananstneessqpkeldgkQKAPEteapenaelnvselssqpskrprtee
Low Complexity Region (SEG)
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFssssglssdlqyssasPHEKLPRTTSFISQSSTPIPQTSHSGLPQsstsshytkessssWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTpsasannapaKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGsssnqensstsLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSELSSQPSKRPRTEE
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************************************RNDWHEWADQLITDDD*L***WN********************************************************************LHEAFVEAVNQLG*****TPKGVLKLMKVEGLTIYHVKSHLQKYR**************************DLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQ************************************************************************************************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************GYVDFA****************************DWHEWADQLIT**************************************************************************WTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT***************************KT****************************************************************************************************************************************
Disordered Region (DISEMBL)
*********RSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSS***********************************************************PESLPGYVDFAANTPVQ*********SGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSA*********RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK*****************RLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGIDML************************DHDK*******************************************************
Disordered Region (DISPRO)
******************************VLPTPLEDTYSKLPNSQQVYM**********************************************************************************SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADT******************************************************PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR*************************GIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGID*************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEARPLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEIxxxxxxxxxxxxxxxxxxxxxRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGSSSNQENSSTSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSELSSQPSKRPRTEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.737	0.852	0.486	7e-80
Q9SAK5	358	Myb family transcription	no	no	0.264	0.351	0.511	1e-31
Q700D9	255	Putative Myb family trans	no	no	0.117	0.219	0.696	6e-17
Q941I2	322	Probable transcription fa	no	no	0.163	0.242	0.55	1e-16
Q93WJ9	403	Transcription repressor K	no	no	0.182	0.215	0.522	2e-16
Q9C616	388	Probable transcription fa	no	no	0.182	0.224	0.494	4e-16
Q9FJV5	276	Probable transcription fa	no	no	0.142	0.246	0.614	1e-15
Q0J235	532	Probable transcription fa	no	no	0.140	0.125	0.594	2e-15
Q940D0	690	Two-component response re	no	no	0.121	0.084	0.593	2e-11
Q9FFH0	386	Transcription activator G	no	no	0.127	0.158	0.516	5e-11

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  298 bits (762), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 185/380 (48%), Positives = 244/380 (64%), Gaps = 28/380 (7%)

Query: 17  NNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHI 76
           N+ G S  MSSS S L T +ED Y KLPNS  V   QEL   P+        NSG  G++
Sbjct: 5   NDFGYSTAMSSSYSALHTSVEDRYHKLPNSFWVSSGQELMNNPVPCQSVSGGNSG--GYL 62

Query: 77  FSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLP---QSSTSSHYTKES 133
           F SSSG  +    S+  PH +  +    +S  + P  + +    P   QSS  +H+ +E 
Sbjct: 63  FPSSSGYCN---VSAVLPHGRNLQNQPPVS--TVPRDRLAMQDCPLIAQSSLINHHPQE- 116

Query: 134 SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIV--SEEFSKRNDWHEWADQLITDDD 191
                 + L  + DF+ + PVQN Q E S   G  V  S E  K+++W +WADQLI+ DD
Sbjct: 117 ----FIDPLHEFFDFSDHVPVQNLQAESS---GVRVDSSVELHKKSEWQDWADQLISVDD 169

Query: 192 PLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTPSAS 251
               +W+E+L D+S     P  + ++P     +P      +QQ    S+E + +   ++S
Sbjct: 170 GSEPNWSELLGDSS--SHNP--NSEIPTPFLDVPRLDITANQQQQMVSSEDQ-LSGRNSS 224

Query: 252 ANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311
           ++ A +K RMRWTPELHEAFVEAVNQLGGSERATPK VLKL+   GLTIYHVKSHLQKYR
Sbjct: 225 SSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR 284

Query: 312 TARYRPDSSEGSS---EKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRN 368
           TARY+P++SE +    EK++T +E+I SLD+KT +EIT+ALRLQMEVQKRLHEQLEIQR+
Sbjct: 285 TARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRS 344

Query: 369 LQLRIEEQGKYLQMMFEKQK 388
           LQL+IE+QG+YLQMMFEKQ+
Sbjct: 345 LQLQIEKQGRYLQMMFEKQQ 364

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 95/135 (70%), Gaps = 9/135 (6%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR--- 314
           KPR+RWT ELHE FV+AV QLGG ++ATPK ++++M V+GLT+YH+KSHLQK+R  +   
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query: 315 --YRPDSS-EGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQL 371
             Y   S+ EGS    +     ++S    +G+       +QMEVQ+RLHEQLE+QR+LQL
Sbjct: 94  KEYGDHSTKEGSRASAMDIQRNVAS---SSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQL 150

Query: 372 RIEEQGKYLQMMFEK 386
           RIE QGKY+Q + E+
Sbjct: 151 RIEAQGKYMQSILER 165

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           PR+RWTPELH +FV AV+ LGG  +ATPK VLK+M V+GLTI HVKSHLQ YR +R
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 248 PSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHL 307
           P  +A      PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHL
Sbjct: 154 PRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHL 213

Query: 308 QKYRTARY--RPDSSEGSSE 325
           Q YRT +   +P +S G S+
Sbjct: 214 QMYRTIKSTEKPTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 242 IRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIY 301
           IR+   P      +   PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ 
Sbjct: 203 IRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 262

Query: 302 HVKSHLQKYRTARY--RP-DSSEGSSEKRL 328
           HVKSHLQ YRT +   +P  SS+GS E+ +
Sbjct: 263 HVKSHLQMYRTVKTTNKPAASSDGSGEEEM 292

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 222 TSMPAHRTQVHQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGS 281
            S P +    HQ L       R    P   A  +   PRMRWT  LH  FV AV  LGG 
Sbjct: 183 VSNPNYHNHHHQTLN------RARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGH 236

Query: 282 ERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           ERATPK VL+LM V+ LT+ HVKSHLQ YRT +
Sbjct: 237 ERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPD 318
           PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHLQ YRT +    
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDK 165

Query: 319 SS--EGSSEK 326
            S  EG  EK
Sbjct: 166 GSPGEGKVEK 175

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 259 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY--R 316
           PRMRWT  LH  FV AV  LGG ERATPK VL+LM V+ LT+ HVKSHLQ YRT +   +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 317 PDSSEGSSE 325
           P +S G ++
Sbjct: 385 PAASSGPAD 393

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR 316
           KPR+ W+ ELH+ FV AVNQLG  E+A PK +L+LM V GLT  +V SHLQKYR    R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRR 294

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 253 NNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           N+   KP++ WTPELH  FV+AV QL G ++A P  +L++M V+ LT ++V SHLQKYR+
Sbjct: 142 NDIKKKPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRS 200

Query: 313 AR 314
            R
Sbjct: 201 HR 202

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
255571218	491	transcription factor, putative [Ricinus	0.991	0.963	0.675	0.0
225438007	517	PREDICTED: uncharacterized protein LOC10	0.995	0.918	0.643	1e-162
356572282	484	PREDICTED: uncharacterized protein LOC10	0.981	0.966	0.620	1e-158
357510131	489	Two-component response regulator ARR [Me	0.991	0.967	0.598	1e-155
388494430	489	unknown [Medicago truncatula]	0.991	0.967	0.594	1e-153
356505050	469	PREDICTED: uncharacterized protein LOC10	0.951	0.968	0.613	1e-151
357510133	468	Two-component response regulator ARR [Me	0.949	0.967	0.593	1e-146
297744202	432	unnamed protein product [Vitis vinifera]	0.821	0.907	0.630	1e-144
356548089	479	PREDICTED: uncharacterized protein LOC10	0.972	0.968	0.582	1e-144
449468574	482	PREDICTED: protein PHR1-LIKE 1-like isof	0.962	0.952	0.566	1e-132

>gi|255571218|ref|XP_002526559.1| transcription factor, putative [Ricinus communis] gi|223534120|gb|EEF35837.1| transcription factor, putative [Ricinus communis]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/493 (67%), Positives = 391/493 (79%), Gaps = 20/493 (4%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP LSIQRS  +QL+NLGVSG +SSS  VLPT  E+TY KL ++QQV ME+ L TRP
Sbjct: 1   MEARPTLSIQRSGVKQLSNLGVSGALSSSYPVLPTSREETYPKLSDAQQVAMEKGLMTRP 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPI-----PQ 114
           L    H+P+N+GVVGH+FSSS+G S+DLQYSS SP EK  R T FISQS T +     PQ
Sbjct: 61  LVHTNHLPSNNGVVGHLFSSSAGFSTDLQYSSVSPQEKHSRNTPFISQSPTNVAALTLPQ 120

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           + HSGL Q + SS Y KE+S+SWCPESLPG++DF  N+ VQN+Q+E +SC+GAI SEEFS
Sbjct: 121 SPHSGLLQCTASSQYDKENSASWCPESLPGFLDFPVNSHVQNNQIESNSCTGAITSEEFS 180

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQ 234
           KRNDW EWADQLITDDD L S+WN++L D S  EMEPKM+YQV K P+ + AH+ QVHQQ
Sbjct: 181 KRNDWQEWADQLITDDDALTSNWNDLLVDNSAPEMEPKMAYQVSKPPSDISAHQPQVHQQ 240

Query: 235 LPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK 294
           LPA S +IR V+TP++S N AP+KPRMRWTPELHEAFV+AVNQLGGSERATPKGVLKLMK
Sbjct: 241 LPAPSIDIRPVLTPTSSVNTAPSKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMK 300

Query: 295 VEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQME 354
           VEGLTIYHVKSHLQKYRTARYRPDS EGSSE++LTPLEEISSLDLKTGIEITEALRLQME
Sbjct: 301 VEGLTIYHVKSHLQKYRTARYRPDSLEGSSEQKLTPLEEISSLDLKTGIEITEALRLQME 360

Query: 355 VQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSSTSLA---- 409
           VQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ KSG D+LK SSS  EN S++L+    
Sbjct: 361 VQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGTDVLKASSSAVENPSSALSSDAV 420

Query: 410 -----KSELEGTQVDHDKKGSDTANANSTNEESSQ-PKELDGKQKAPETEAPENAELNVS 463
                K+E+E ++VDH    ++T +  S  EE SQ P E   K+KA + EA  N E +  
Sbjct: 421 HDSSGKNEMEASKVDHGNAITNTDDTKSKLEERSQDPNE---KKKALQIEASGNPEPDNG 477

Query: 464 ELSSQPSKRPRTE 476
           E +SQ +KRPR +
Sbjct: 478 ESNSQSAKRPRLD 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438007|ref|XP_002270511.1| PREDICTED: uncharacterized protein LOC100244545 [Vitis vinifera]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 327/508 (64%), Positives = 389/508 (76%), Gaps = 33/508 (6%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEA   LSI+ S ++QLNNLG SG +SSSLSVLPT LE+T+ KLP+SQQVY+ +E+ TRP
Sbjct: 1   MEAHSTLSIRGSGSKQLNNLGASGALSSSLSVLPTSLEETHPKLPDSQQVYVGREIMTRP 60

Query: 60  LA-PAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSST-----PIP 113
            A  A  +P+NSG VGHIFSSSSG S+DL +SS SPHE+  R+  FISQSS+     P+ 
Sbjct: 61  QAMHASPLPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRSAPFISQSSSNGTSLPLA 120

Query: 114 QTSHSGLPQSSTSSHYTKESS-SSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEE 172
            +SHSG  QS+ SSHY +E++ +SWC +SL G++DF  NTPVQ+SQ+E  S SG I SE+
Sbjct: 121 HSSHSGQLQSTASSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASED 180

Query: 173 FSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVH 232
            SKR+DW EWADQLITDDD L S+WNE L DT++ ++EPKM+YQVPK  ++  A++ QVH
Sbjct: 181 LSKRHDWQEWADQLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVH 240

Query: 233 QQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL 292
            QL A S E+  VVTPS+S N AP KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL
Sbjct: 241 PQLSAPSGEVHNVVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKL 300

Query: 293 MKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQ 352
           MKVEGLTIYHVKSHLQKYRTARYRP+SSEGSSEKRLT +EE+SSLDLKTGIEITEALRLQ
Sbjct: 301 MKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQ 360

Query: 353 MEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSST----- 406
           MEVQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ KSGID LK SSS  EN S+     
Sbjct: 361 MEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSSLSSDT 420

Query: 407 ---SLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPET----------- 452
              S AKSE+E +  +HDK G+D  N + T+  S  P++L  +Q A ET           
Sbjct: 421 IPNSPAKSEMEASHDEHDKTGTDLVNDSKTS--SGNPQKLSREQNAIETEALLGSEQIAI 478

Query: 453 --EAPENAELNVS-ELSSQPSKRPRTEE 477
             EAP N E + + E +SQPSKR + +E
Sbjct: 479 EPEAPRNVEQDAACESNSQPSKRAKVDE 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572282|ref|XP_003554298.1| PREDICTED: uncharacterized protein LOC100810560 [Glycine max]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/493 (62%), Positives = 378/493 (76%), Gaps = 25/493 (5%)

Query: 1   MEAR-PLSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEAR   SI RS+A+QLNN+G+S    SSL  LP+PLE+TY KL +S+ V+ME+EL+T+P
Sbjct: 1   MEARSAFSIDRSNAKQLNNMGMSEAFPSSLPALPSPLEETYPKLSDSKPVFMEKELKTKP 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + H+  +SG VGH+FSSS G S+DL +SS S HEK PR T FISQS     S P+  
Sbjct: 61  YTHSSHL-TSSGAVGHMFSSSPGYSTDLHHSSFSSHEKQPRNTHFISQSLSNMASLPLSY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S+S    S+TS+ Y+  +S SW  +SLP ++DF ANT + NSQ+E S C+  + +EE+S
Sbjct: 120 SSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIGNSQVESSDCN-IMATEEYS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMP-AHRTQVHQ 233
           KRNDW EWADQLI+D DPL S+WN++LAD ++ ++EPK    V K+ + +P  H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDVDPLTSNWNDLLAD-NIQDLEPK----VAKSSSQLPIGHQSQSHQ 233

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPASS E R  V P++S N+APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 234 QLPASSGENRVGVAPTSSTNSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KV+GLTIYHVKSHLQKYRTARYRP+SSEG++EK+L+P+EE+SSLDLKTGIEITEALRLQM
Sbjct: 294 KVDGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQM 353

Query: 354 EVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS------- 405
           EVQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ K GI+  K SSS  E+ S       
Sbjct: 354 EVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASSSAIESQSGVSSDAI 413

Query: 406 -TSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSE 464
             S AK+E E  +VDH K G+D AN  +T EES+   E+  KQ APE++A EN E + SE
Sbjct: 414 KDSPAKTESETIKVDHCKSGADQANGITTVEESAL--EVGEKQDAPESQASENPEQHASE 471

Query: 465 LSSQPSKRPRTEE 477
            S++ SKRPRTEE
Sbjct: 472 DSAKASKRPRTEE 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510131|ref|XP_003625354.1| Two-component response regulator ARR [Medicago truncatula] gi|355500369|gb|AES81572.1| Two-component response regulator ARR [Medicago truncatula]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/493 (59%), Positives = 375/493 (76%), Gaps = 20/493 (4%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP  SI+RSS++QLNN+G+SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+ 
Sbjct: 1   MEARPAFSIERSSSQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKT 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + HI ++SG VGH+FSSS G S+DL +SS SPHEK  R+  FISQS     S P+P 
Sbjct: 61  FNHSSHI-SSSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G   S+TS+HY+  +S+SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFS
Sbjct: 120 SSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQ 233
           KRNDW EWADQLI+DDD L S+WN++LAD ++ ++EPK    + K+ +  PA H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDDDTLTSNWNDLLAD-NIQDLEPKAVESISKSSSQFPAGHQSQDHQ 237

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPA S E    V PS+SAN+A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 238 QLPALSGENHVGVAPSSSANSATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 297

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KVEGLTIYHVKSHLQKYRTARYRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQM
Sbjct: 298 KVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQM 357

Query: 354 EVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS------- 405
           EVQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ KSG++  K SSS  EN S       
Sbjct: 358 EVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSSDTM 417

Query: 406 -TSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSE 464
             S  K+ELE +++DH K G D AN ++T EESS  + ++    +   +A ++ E N +E
Sbjct: 418 KDSPTKNELEASKMDHCKSGPDQANGSTTVEESSL-EAVEKLDTSKSQQASKDLEQNENE 476

Query: 465 LSSQPSKRPRTEE 477
            S Q  KR RT+E
Sbjct: 477 DSPQAPKRQRTDE 489

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494430|gb|AFK35281.1| unknown [Medicago truncatula]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/493 (59%), Positives = 372/493 (75%), Gaps = 20/493 (4%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEARP  SI+RSS++QLNN+G+SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+ 
Sbjct: 1   MEARPAFSIERSSSQQLNNIGMSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKT 60

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQ 114
              + HI ++SG VGH+FSSS G  +DL +SS SPHEK  R+  FISQS     S P+P 
Sbjct: 61  FNHSSHI-SSSGAVGHMFSSSPGYLTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPY 119

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G   S+TS+HY+  +S+SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFS
Sbjct: 120 SSNNGPVPSTTSTHYSNGNSASWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFS 178

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQ 233
           KRNDW EWADQLI+DDD L S+WN++LAD ++ ++EPK    + K  +  PA H++Q HQ
Sbjct: 179 KRNDWQEWADQLISDDDTLTSNWNDLLAD-NIQDLEPKAVESISKPSSQFPAGHQSQDHQ 237

Query: 234 QLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 293
           QLPA S E    V PS+SAN+A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM
Sbjct: 238 QLPALSGENHVGVAPSSSANSATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLM 297

Query: 294 KVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQM 353
           KVEGLTIYHVKSHLQKYRTARYRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQM
Sbjct: 298 KVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQM 357

Query: 354 EVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS------- 405
           EVQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ KSG++  K SSS  EN S       
Sbjct: 358 EVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSSDTM 417

Query: 406 -TSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSE 464
             S  K+ELE +++DH K   D AN ++T EESS  + ++    +   +A ++ E N +E
Sbjct: 418 KDSPTKNELEASKMDHCKSRPDQANGSTTVEESSL-EAVEKLDTSKSQQASKDLEQNENE 476

Query: 465 LSSQPSKRPRTEE 477
            S Q  KR RT+E
Sbjct: 477 DSPQAPKRQRTDE 489

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505050|ref|XP_003521305.1| PREDICTED: uncharacterized protein LOC100784711 [Glycine max]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/474 (61%), Positives = 361/474 (76%), Gaps = 20/474 (4%)

Query: 19  LGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFS 78
           +G+S    SSL VLP+PLE+T+ KL +S+  +ME+EL+T+P   + H+  +SG VGH+FS
Sbjct: 1   MGMSEVFPSSLPVLPSPLEETFPKLSDSRPAFMEKELKTKPFTHSSHL-TSSGAVGHMFS 59

Query: 79  SSSGLSSDLQYSSASPHEKLPRTTSFISQ-----SSTPIPQTSHSGLPQSSTSSHYTKES 133
           SS G S+DL +SS S +EK PR T FISQ     +S P+  +S+S    S+TS+ Y+  +
Sbjct: 60  SSPGYSTDLHHSSFSSYEKQPRNTHFISQPLGNMASLPLSYSSNSEPIPSTTSTPYSNGN 119

Query: 134 SSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPL 193
           S SW  +SLP ++DF ANT + NSQ+E  +C+  + +EE+SKRNDW EWADQLI+D DPL
Sbjct: 120 SVSWHTDSLPSFLDFTANTSIDNSQVENRACN-IMATEEYSKRNDWQEWADQLISDVDPL 178

Query: 194 GSSWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQQLPASSTEIRTVVTPSASA 252
            S+WN++LAD ++ ++EPK  YQV K+ + +P  H++Q HQQL ASS E R  V P++SA
Sbjct: 179 TSNWNDLLAD-NIQDLEPKAVYQVTKSSSQLPIEHQSQSHQQLCASSGENRVGVAPTSSA 237

Query: 253 NNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           N+APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT
Sbjct: 238 NSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 297

Query: 313 ARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLR 372
           ARYRP+SSEG++EK L+ +EE+SSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLR
Sbjct: 298 ARYRPESSEGAAEKNLSRIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLR 357

Query: 373 IEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS--------TSLAKSELEGTQVDHDKK 423
           IEEQG+YLQMMFEKQ K GI+  K SSS  E+ S         S AK+E E  +VDH K 
Sbjct: 358 IEEQGRYLQMMFEKQCKPGIETFKASSSVIESQSGVSSDAIKDSPAKTESETIKVDHCKS 417

Query: 424 GSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSELSSQPSKRPRTEE 477
           G+D AN ++T EESS   E+  KQ APE +A +N E + SE S   SKRPRTEE
Sbjct: 418 GADLANGSTTVEESSL--EVAEKQDAPEIQASDNPEQHASEDSGNASKRPRTEE 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510133|ref|XP_003625355.1| Two-component response regulator ARR [Medicago truncatula] gi|355500370|gb|AES81573.1| Two-component response regulator ARR [Medicago truncatula]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/472 (59%), Positives = 356/472 (75%), Gaps = 19/472 (4%)

Query: 21  VSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVVGHIFSSS 80
           +SG + SSLSV PTPLE+TY +  +SQ  Y+E++L+T+    + HI ++SG VGH+FSSS
Sbjct: 1   MSGALPSSLSVHPTPLEETYPRFSDSQPTYVEKDLKTKTFNHSSHI-SSSGAVGHMFSSS 59

Query: 81  SGLSSDLQYSSASPHEKLPRTTSFISQS-----STPIPQTSHSGLPQSSTSSHYTKESSS 135
            G S+DL +SS SPHEK  R+  FISQS     S P+P +S++G   S+TS+HY+  +S+
Sbjct: 60  PGYSTDLHHSSLSPHEKHSRSAHFISQSLSNMASVPLPYSSNNGPVPSTTSTHYSNGNSA 119

Query: 136 SWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGS 195
           SW  + LP ++DF+AN  + N+Q+E  +C+  + +EEFSKRNDW EWADQLI+DDD L S
Sbjct: 120 SWHADPLPSFLDFSANASIDNNQVESGACN-IMATEEFSKRNDWQEWADQLISDDDTLTS 178

Query: 196 SWNEILADTSMTEMEPKMSYQVPKTPTSMPA-HRTQVHQQLPASSTEIRTVVTPSASANN 254
           +WN++LAD ++ ++EPK    + K+ +  PA H++Q HQQLPA S E    V PS+SAN+
Sbjct: 179 NWNDLLAD-NIQDLEPKAVESISKSSSQFPAGHQSQDHQQLPALSGENHVGVAPSSSANS 237

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR
Sbjct: 238 ATTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 297

Query: 315 YRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIE 374
           YRP+SSEG+ EK+L+P+E+ISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIE
Sbjct: 298 YRPESSEGAGEKKLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIE 357

Query: 375 EQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS--------TSLAKSELEGTQVDHDKKGS 425
           EQG+YLQMMFEKQ KSG++  K SSS  EN S         S  K+ELE +++DH K G 
Sbjct: 358 EQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSSDTMKDSPTKNELEASKMDHCKSGP 417

Query: 426 DTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSELSSQPSKRPRTEE 477
           D AN ++T EESS  + ++    +   +A ++ E N +E S Q  KR RT+E
Sbjct: 418 DQANGSTTVEESSL-EAVEKLDTSKSQQASKDLEQNENEDSPQAPKRQRTDE 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744202|emb|CBI37172.3| unnamed protein product [Vitis vinifera]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/436 (63%), Positives = 323/436 (74%), Gaps = 44/436 (10%)

Query: 66  IPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTPIPQTSHSGLPQSST 125
           +P+NSG VGHIFSSSSG S+DL +SS SPHE+  R                     QS+ 
Sbjct: 6   LPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRRQL------------------QSTA 47

Query: 126 SSHYTKESS-SSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWAD 184
           SSHY +E++ +SWC +SL G++DF  NTPVQ+SQ+E  S SG I SE+ SKR+DW EWAD
Sbjct: 48  SSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWAD 107

Query: 185 QLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRT 244
           QLITDDD L S+WNE L DT++ ++EPKM+YQVPK  ++  A++ QVH QL A S E+  
Sbjct: 108 QLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQLSAPSGEVHN 167

Query: 245 VVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 304
           VVTPS+S N AP KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK
Sbjct: 168 VVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 227

Query: 305 SHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLE 364
           SHLQKYRTARYRP+SSEGSSEKRLT +EE+SSLDLKTGIEITEALRLQMEVQKRLHEQLE
Sbjct: 228 SHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLE 287

Query: 365 IQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSST--------SLAKSELEG 415
           IQRNLQLRIEEQG+YLQMMFEKQ KSGID LK SSS  EN S+        S AKSE+E 
Sbjct: 288 IQRNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSSLSSDTIPNSPAKSEMEA 347

Query: 416 TQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPET-------------EAPENAELNV 462
           +  +HDK G+D  N + T+  S  P++L  +Q A ET             EAP N E + 
Sbjct: 348 SHDEHDKTGTDLVNDSKTS--SGNPQKLSREQNAIETEALLGSEQIAIEPEAPRNVEQDA 405

Query: 463 S-ELSSQPSKRPRTEE 477
           + E +SQPSKR + +E
Sbjct: 406 ACESNSQPSKRAKVDE 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548089|ref|XP_003542436.1| PREDICTED: uncharacterized protein LOC100793593 [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/491 (58%), Positives = 357/491 (72%), Gaps = 27/491 (5%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRP 59
           MEA P  SI+RS  +QLNN+G+SG +SSSLS+LP P E+ + KLP SQ  ++EQEL TRP
Sbjct: 1   MEAHPTFSIERS--KQLNNMGMSGALSSSLSILPIPPEEMFPKLPQSQLDFVEQELMTRP 58

Query: 60  LAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSST-----PIPQ 114
              + ++  + GVVGHIFSSS G S+DL +SS SP EK       ISQSST     P+  
Sbjct: 59  FTHSSYL-NSGGVVGHIFSSSPGYSTDLHHSSLSPDEKHSTNAHLISQSSTNITQFPLSY 117

Query: 115 TSHSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFS 174
           +S++G P S+T SHY+KESS SW  +SLP ++DF  N  + N+++E S+C   + SEE+S
Sbjct: 118 SSNTGPPTSATPSHYSKESSVSWHTDSLPSFLDFPENGSIDNNRVESSACP-IMASEEYS 176

Query: 175 KRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQ 234
           K+NDW EWA++LI+DDD L ++WN++LAD ++ ++EPK+ +QV K  + +P H++Q HQQ
Sbjct: 177 KQNDWQEWAERLISDDDTLTTNWNDLLAD-NIQDLEPKVPFQVSKPLSQIPGHQSQGHQQ 235

Query: 235 LPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMK 294
           LPAS  E       S+SAN APAK RMRWTPELHEAFVEAVNQLGGSE+ATPKGVLKLMK
Sbjct: 236 LPASYGENCIGAALSSSANFAPAKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMK 295

Query: 295 VEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQME 354
           VEGLTIYHVKSHLQKYRTARYRP+SSEG  EK+ + +EE++SLDL+TGIEITEALRLQME
Sbjct: 296 VEGLTIYHVKSHLQKYRTARYRPESSEGVMEKKTSSVEEMASLDLRTGIEITEALRLQME 355

Query: 355 VQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSS-------- 405
           VQKRLHEQLEIQRNLQLRIEEQG+YLQMMFEKQ K G +  K  SS  E  S        
Sbjct: 356 VQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGNETFKAPSSIIETPSGGSSNATK 415

Query: 406 TSLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAPETEAPENAELNVSEL 465
            SLAK+E+E +QV+H + G D    ++T EE S  K   GK  +P+TE         SE 
Sbjct: 416 DSLAKNEMEASQVNHGRSGPDQVKGSTTFEEGSLEK--CGKPDSPKTE-----HAIASED 468

Query: 466 SSQPSKRPRTE 476
           S+Q  KR RTE
Sbjct: 469 SAQAPKRQRTE 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468574|ref|XP_004151996.1| PREDICTED: protein PHR1-LIKE 1-like isoform 1 [Cucumis sativus] gi|449509422|ref|XP_004163584.1| PREDICTED: protein PHR1-LIKE 1-like isoform 1 [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/487 (56%), Positives = 355/487 (72%), Gaps = 28/487 (5%)

Query: 1   MEARP-LSIQRSSARQLNNLGVSGPMSSSLSVL-PTPLEDTYSKLPNSQQVYMEQELRTR 58
           +EA P L+I  S+ARQ N+ GV+  +S SL VL PT LE+ Y KLP+SQQV ME+EL +R
Sbjct: 13  IEASPALAIPGSNARQHNSAGVNKEISKSLRVLLPTSLEEVYPKLPDSQQVSMERELVSR 72

Query: 59  PLAPAPHIPANSGVVGHIFSSSSGLSSDLQYSSASPHEKLPRTTSFISQSSTP-IPQTS- 116
           PL  + HI ++SGVVGHIFSSS G S+DL YSS S +E         +QS  P IP++S 
Sbjct: 73  PLVHSNHIHSSSGVVGHIFSSSPGFSTDLHYSSVSLYE---------NQSDAPFIPESSA 123

Query: 117 -----HSGLPQSSTSSHYTKESSSSWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSE 171
                HS     S+++H T E+++SWC ++LPG+++   N PV NS++E +SCS  + S+
Sbjct: 124 NDAMLHSHSEILSSTNHPTSENANSWCSDALPGFLEVPENNPVGNSRVENNSCSSLLASD 183

Query: 172 EFSKRNDWHEWADQLITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQV 231
           +FSK NDW EW D+L+TDD  L S+W+++L D ++ ++EPKM +Q  K  T M   +TQV
Sbjct: 184 DFSKENDWQEWTDRLMTDDS-LTSNWSDLLVDANVADLEPKMEHQASKPSTKMQVQQTQV 242

Query: 232 HQQLPASSTEIRTVVTPSASANNAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLK 291
           +Q LP SS EI  ++  S  +N AP+KPRMRWTPELH+AFVEAVN+LGGSERATPKGVLK
Sbjct: 243 NQ-LP-SSGEI-PMIAISTPSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLK 299

Query: 292 LMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRL 351
           LM+VEGLTIYHVKSHLQKYRTARY+P+SS+GS +K  T LE+ISSLDLKT I+ITEALRL
Sbjct: 300 LMQVEGLTIYHVKSHLQKYRTARYQPESSKGSMDKSSTSLEDISSLDLKTSIDITEALRL 359

Query: 352 QMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSGIDMLKGSSSNQENSSTSLAK 410
           QMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ KS   + K S+S  E+S    + 
Sbjct: 360 QMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNKLSKPSTSTLEDS--PFSD 417

Query: 411 SELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAP-ETEAPENAELNVSELSSQP 469
           S LE +QV++    +  + A+S   +++   E++GK   P + +APEN E +VSE S Q 
Sbjct: 418 SVLETSQVENRTVHTRPSEADSNAGKATD--EVNGKCIDPHKDDAPENPESDVSEASFQL 475

Query: 470 SKRPRTE 476
           SKR RTE
Sbjct: 476 SKRQRTE 482

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.612	0.713	0.574	3.8e-91
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.746	0.861	0.462	3.7e-71
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.511	0.614	0.517	7.9e-64
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.740	0.798	0.409	8.1e-60
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.285	0.362	0.627	1.5e-42
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.566	0.601	0.412	4e-42
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.280	0.468	0.656	5.2e-42
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.423	0.512	0.398	7.4e-34
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.425	0.504	0.4	4.1e-33
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.283	0.453	0.52	2.9e-32

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 186/324 (57%), Positives = 225/324 (69%)

Query:   137 WCPESLPG-YVDFAANTP-VQNS-QMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPL 193
             WC +SLPG ++DF    P +QN+ Q+E    + A   ++  KR+DWHEWAD LITDDDPL
Sbjct:   110 WCHDSLPGGFLDFHETNPAIQNNCQIEDGGIAAAF--DDIQKRSDWHEWADHLITDDDPL 167

Query:   194 GSS-WNEILADT-SMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTXXXX 251
              S+ WN++L +T S ++ + + + Q+P+     P    Q+ QQ P+ S E+R V T    
Sbjct:   168 MSTNWNDLLLETNSNSDSKDQKTLQIPQ-----P----QIVQQQPSPSVELRPVSTTSSN 218

Query:   252 XXXXXXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311
                   K RMRWTPELHEAFVEAVN LGGSERATPKGVLK+MKVEGLTIYHVKSHLQKYR
Sbjct:   219 SNNGTGKARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYR 278

Query:   312 TARYRPDSSE-GSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQ 370
             TARYRP+ SE GS E++LTPLE I+SLDLK GI ITEALRLQMEVQK+LHEQLEIQRNLQ
Sbjct:   279 TARYRPEPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQ 338

Query:   371 LRIEEQGKYLQMMFEKQKSGIDMLKGXXXXXXXXXXXLAKSELEGTQVDHDKKGSDTANA 430
             LRIEEQGKYLQMMFEKQ SG+   KG            AKSE E      DKK +D+   
Sbjct:   339 LRIEEQGKYLQMMFEKQNSGLT--KGTASTSDSA----AKSEQE------DKKTADSKEV 386

Query:   431 NSTNEESSQPKELDGKQ-KAPETE 453
                 EE+ + +EL+  Q K P+ +
Sbjct:   387 --PEEETRKCEELESPQPKRPKID 408

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 174/376 (46%), Positives = 221/376 (58%)

Query:    17 NNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPA-NSGVVGH 75
             N+ G S  MSSS S L T +ED Y KLPNS  V   QEL   P+ P   +   NSG  G+
Sbjct:     5 NDFGYSTAMSSSYSALHTSVEDRYHKLPNSFWVSSGQELMNNPV-PCQSVSGGNSG--GY 61

Query:    76 IFXXXXXXXXXXXXXXXXPHEKLPRTTSFISQSSTPIPQTSHSGLPQXXXXXXXXXXXXX 135
             +F                PH +  +    +S  + P  + +    P              
Sbjct:    62 LFPSSSGYCNVSAVL---PHGRNLQNQPPVS--TVPRDRLAMQDCPLIAQSSLINHHPQE 116

Query:   136 XWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGS 195
                P  L  + DF+ + PVQN Q E S       S E  K+++W +WADQLI+ DD    
Sbjct:   117 FIDP--LHEFFDFSDHVPVQNLQAESSGVR-VDSSVELHKKSEWQDWADQLISVDDGSEP 173

Query:   196 SWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTVVTXXXXXXXX 255
             +W+E+L D+S     P    ++P     +P      +QQ    S+E + +          
Sbjct:   174 NWSELLGDSS--SHNPNS--EIPTPFLDVPRLDITANQQQQMVSSEDQ-LSGRNSSSSVA 228

Query:   256 XXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARY 315
               K RMRWTPELHEAFVEAVNQLGGSERATPK VLKL+   GLTIYHVKSHLQKYRTARY
Sbjct:   229 TSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARY 288

Query:   316 RPDSSE--GS-SEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLR 372
             +P++SE  G   EK++T +E+I SLD+KT +EIT+ALRLQMEVQKRLHEQLEIQR+LQL+
Sbjct:   289 KPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQ 348

Query:   373 IEEQGKYLQMMFEKQK 388
             IE+QG+YLQMMFEKQ+
Sbjct:   349 IEKQGRYLQMMFEKQQ 364

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 7.9e-64, Sum P(3) = 7.9e-64
 Identities = 135/261 (51%), Positives = 163/261 (62%)

Query:   137 WCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQLIT-DDDPLGS 195
             W P  LP ++ F + +P  N  ME     G I  +E  K++D   W D LIT D+DPL S
Sbjct:   113 WIPSPLP-HIYFPSGSP--NLIME----DGVI--DEIHKQSDLPLWYDDLITTDEDPLMS 163

Query:   196 S-WNEILADTSMTE----MEPKMSYQVPKTPTSMPAHRTQVHQQLPASST-EIRTVVTXX 249
             S   ++L DT+        +P M  Q+ + P ++    +   +  P   T    +     
Sbjct:   164 SILGDLLLDTNFNSASKVQQPSMQSQIQQ-PQAVLQQPSSCVELRPLDRTVSSNSNNNSN 222

Query:   250 XXXXXXXXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQK 309
                     K RMRWTPELHE FV+AVNQLGGS  ATPKGVLK MKVEGLTI+HVKSHLQK
Sbjct:   223 SNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQK 282

Query:   310 YRTARYRPDSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNL 369
             YRTA+Y P  SEGS E RLTPLE+I+S D K GI+ITE LR+QME QK+LHEQLE  R +
Sbjct:   283 YRTAKYIPVPSEGSPEARLTPLEQITSDDTKRGIDITETLRIQMEHQKKLHEQLESLRTM 342

Query:   370 QLRIEEQGKYLQMMFEKQKSG 390
             QLRIEEQGK L MM EKQ  G
Sbjct:   343 QLRIEEQGKALLMMIEKQNMG 363

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 158/386 (40%), Positives = 207/386 (53%)

Query:    17 NNLGVSGPMSSSLSVLPTPLEDTYSKLPNSQQVYMEQELRTRPLAPAPHIPANSGVV--G 74
             ++ G    +SSS ++L    E  ++  PN+  V   QE       P    P  SG    G
Sbjct:     5 SDFGFPSAISSSFTILE---ERYHNNFPNTLCVSSGQESMNNNPVPCQVFPLVSGGSSGG 61

Query:    75 HIFXXXXXX---XXXXXXXXXXPH-EKLPR---TTSFISQSST--PIPQTSHSGLPQXXX 125
             ++F                   P    +PR   T + +S        P  +HS       
Sbjct:    62 NLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAHVSGEGQRQECPVETHS----LQL 117

Query:   126 XXXXXXXXXXXWCPESLPGYVDFAANTPVQNSQMEGSSCSGAIVSEEFSKRNDWHEWADQ 185
                        W  + + G+ DF    PV + Q   +S    + S+E   + +W +WADQ
Sbjct:   118 INQPQEQKIMTWSSDQIRGFFDF----PVPDPQ--AASSRTMVSSKEVLSKCEWPDWADQ 171

Query:   186 LITDDDPLGSSWNEILADTSMTEMEPKMSYQVPKTPTSMPAHRTQVHQQLPASSTEIRTV 245
             LI+DD  L  +W+E+L D ++  +  K+  Q           R Q HQ  P+    +   
Sbjct:   172 LISDDS-LEPNWSELLGDPNVLNLYSKIETQSSDIARQEIVFRNQ-HQVDPS----MEPF 225

Query:   246 VTXXXXXXXXXXKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKS 305
                         K RMRWTPELHEAFVEA+NQLGGSERATPK VLKL+   GLT+YHVKS
Sbjct:   226 NAKSPPASSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKS 285

Query:   306 HLQKYRTARYRPDSSEGSSE---KRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQ 362
             HLQKYRTARY+P+ S+ + E   K L  +E+I SLDLKT IEITEALRLQM+VQK+LHEQ
Sbjct:   286 HLQKYRTARYKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQ 345

Query:   363 LEIQRNLQLRIEEQGKYLQMMFEKQK 388
             LEIQR+LQL+IEEQG+YLQMM EKQ+
Sbjct:   346 LEIQRSLQLQIEEQGRYLQMMIEKQQ 371

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 86/137 (62%), Positives = 110/137 (80%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             K R+RWT +LHE FVE VN+LGG+++ATPK +LK M  +GLTI+HVKSHLQKYR A+Y P
Sbjct:   192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMP 251

Query:   318 DSSEGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQG 377
             +S EG  EKR    +E+S LD +TG++I EAL+LQ++VQ+ LHEQLEIQRNLQLRIEEQG
Sbjct:   252 ESQEGKFEKRACA-KELSQLDTRTGVQIKEALQLQLDVQRHLHEQLEIQRNLQLRIEEQG 310

Query:   378 KYLQMMFEKQKSGIDML 394
             K L+MM E+Q+   + L
Sbjct:   311 KQLKMMMEQQQKNKESL 327

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 125/303 (41%), Positives = 163/303 (53%)

Query:   159 MEGSSCSGAIVSEEFSKRNDWHEWADQLITDDDPLGSSWNEI-LADTSMTEMEPKMSYQV 217
             + G +CS      +F   ND +  +DQ+      L    +E+ LA T   E  P++  ++
Sbjct:   148 LSGDACSDGDF-HDFGCSNDSYCLSDQM-----ELQFLSDELELAITDRAET-PRLD-EI 199

Query:   218 PKTP-TSMPAHRTQVHQQLPASSTEIRTVVTXXXXXXXXXXKPRMRWTPELHEAFVEAVN 276
              +TP  S P  R    Q     +  +  V +          K RMRWTPELHE+FV+AV 
Sbjct:   200 YETPLASNPVTRLSPSQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVI 259

Query:   277 QLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSE-----GSSEKRLTPL 331
             +L G E+ATPK V KLM VEGLTIYHVKSHLQKYR A+Y P+  E      S EK+L  L
Sbjct:   260 KLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLA-L 318

Query:   332 EEISSLDLKTG-IEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSG 390
              +  + + K G I++TEALR+QMEVQK+LHEQLE+QR LQLRIEE  KYL+ M E+Q+  
Sbjct:   319 SKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQR-- 376

Query:   391 IDMLKGXXXXXXXXXXXLAKSELEGTQVDHDKKGSDTANANSTNEESSQPKELDGKQKAP 450
                 K            L+ S         D    D+ N + T   S QP  L  + KA 
Sbjct:   377 ----KTGRWISSSSQTVLSPS---------DDSIPDSQNMSKTKASSPQPP-LPAENKAS 422

Query:   451 ETE 453
             ETE
Sbjct:   423 ETE 425

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 90/137 (65%), Positives = 110/137 (80%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             K R+RWT ELHE FV+AV QLGG +RATPKGVL++M V+GLTIYHVKSHLQKYR A+Y P
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:   318 DSS-EGSSEKRLTPLEEISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQ 376
             DSS EG    +    + +S LD  +G++ITEAL+LQMEVQKRLHEQLE+QR LQLRIE Q
Sbjct:    75 DSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQ 134

Query:   377 GKYLQMMFEKQK--SGI 391
             GKYL+ + E+Q+  SG+
Sbjct:   135 GKYLKKIIEEQQRLSGV 151

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 92/231 (39%), Positives = 133/231 (57%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             KPR++WTP+LHE F+EAVNQLGG+++ATPK ++K+M + GLT+YH+KSHLQKYR ++   
Sbjct:    45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   318 DSSEGSSEK--------RLTP-LEEISSLDLKTGIE------ITEALRLQMEVQKRLHEQ 362
               +  S  K          TP  +EI S +L  G +      I EAL++Q+EVQ+RLHEQ
Sbjct:   105 GQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query:   363 LEIQRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGXXXXXXXXXXXLAKSELEGTQVDHDK 422
             LE+QR+LQLRIE QGKYLQ + EK +  +                L  + +E  +V   +
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQN------------LGAAGIEAAKVQLSE 212

Query:   423 KGSDTANANSTNEESSQPKELDGK-QKAPETEAPENAELNVSELSSQPSKR 472
               S  + A   N    +PKEL     +  +T  P +  L     SS+ +++
Sbjct:   213 LVSKVS-AEYPNSSFLEPKELQNLCSQQMQTNYPPDCSLESCLTSSEGTQK 262

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 94/235 (40%), Positives = 137/235 (58%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRP 317
             KPR++WTP+LHE FVEAVNQLGG ++ATPK ++K+M + GLT+YH+KSHLQKYR ++   
Sbjct:    45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   318 DSSEGSSEKR--LTPLEE-------ISSLDLKTG------IEITEALRLQMEVQKRLHEQ 362
               +  S  K   +T +EE         S  L  G      + I++AL++Q+EVQ+RLHEQ
Sbjct:   105 GQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQ 164

Query:   363 LEIQRNLQLRIEEQGKYLQMMFEKQKSGIDMLKGXXXXXXXXXXXLAKSELEGTQVDHDK 422
             LE+QR+LQLRIE QGKYLQ + EK +  +                L  + +E T+    +
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN------------LGAAGIEATKAQLSE 212

Query:   423 KGSDTANANSTNEESSQPKELDG--KQKAPETEAPENAELNVSELSSQPS-KRPR 474
               S  + A+  +    +PKEL     Q+  +T  P N+ L+    SS+ + K P+
Sbjct:   213 LVSKVS-ADYPDSSFLEPKELQNLHHQQMQKTYPP-NSSLDSCLTSSEGTQKAPK 265

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 78/150 (52%), Positives = 100/150 (66%)

Query:   258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR- 316
             KPR+RWT ELHE FV+AV QLGG ++ATPK +++ M V+GLT+YH+KSHLQK+R  R   
Sbjct:    41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAG 100

Query:   317 PDSSEGSS------EKRLTPLEEISSLDL-----KTGIEITEALRLQMEVQKRLHEQLE- 364
              +S+E S       E + T     SS+ +       G ++TEALR QMEVQ+RLH+QLE 
Sbjct:   101 KESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEY 160

Query:   365 --IQRNLQLRIEEQGKYLQMMFEKQKSGID 392
               +QR LQLRIE QGKYLQ + EK     D
Sbjct:   161 GQVQRRLQLRIEAQGKYLQSILEKACKAFD 190

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	8e-23
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-22
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	1e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 90.9 bits (226), Expect = 8e-23
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
           KPR+ WT +LH+ F++AV +LGG + ATPK +L+LM V+GLT   V SHLQKYR 
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 35/47 (74%), Positives = 43/47 (91%)

Query: 342 GIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQK 388
           G++ITEALRLQMEVQ+RLHEQLE+QR+LQ+RIE QGKYLQ + EK +
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQ 47

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 247 TPSASANNAPAKPRMR--WTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVK 304
           +P +  N AP K + +  WTPELH  FV AV QLG  E+A P  +L+LM V+ LT +++ 
Sbjct: 222 SPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIA 280

Query: 305 SHLQKYRTAR 314
           SHLQKYR+ R
Sbjct: 281 SHLQKYRSHR 290

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311
           R  WTPE  E  +EAV + G         + K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.83
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.28
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	89.35
smart00426	68	TEA TEA domain.	84.73

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=1.3e-23  Score=213.65  Aligned_cols=65  Identities=48%  Similarity=0.741  Sum_probs=60.6

Q ss_pred             CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCCCC
Q 011788          254 NAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDS  319 (477)
Q Consensus       254 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~~~  319 (477)
                      ...+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+++++...
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~  295 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA  295 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence            34789999999999999999999999 699999999999999999999999999999999886543

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.88  E-value=6.2e-23  Score=158.13  Aligned_cols=48  Identities=75%  Similarity=1.100  Sum_probs=46.1

Q ss_pred             ccChHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hh
Q 011788          342 GIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KS  389 (477)
Q Consensus       342 ~~~i~eALr~QmEvQkrLhEQLEvQR~LQlRIEaqgKyLq~mlek~-k~  389 (477)
                      |++|+||||+||||||||||||||||+||+|||||||||++|||+| +.
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~   49 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKA   49 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999 54

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.83  E-value=6.4e-21  Score=149.30  Aligned_cols=56  Identities=57%  Similarity=0.952  Sum_probs=54.4

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011788          258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA  313 (477)
Q Consensus       258 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~  313 (477)
                      |+|++||+|+|.+||+||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.28  E-value=0.00056  Score=50.88  Aligned_cols=48  Identities=33%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011788          260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR  311 (477)
Q Consensus       260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR  311 (477)
                      |..||+|=+++|++||.++|.-   .-+.|.+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999931   5888999988 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=89.35  E-value=0.65  Score=36.80  Aligned_cols=33  Identities=39%  Similarity=0.469  Sum_probs=26.4

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhc
Q 011788          357 KRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSG  390 (477)
Q Consensus       357 krLhEQLEvQR~LQlRIEaqgKyLq~mlek~-k~~  390 (477)
                      .-|+.|+||||.|+=.+|.| |.||.-+|.+ |-.
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            56889999999999999998 6778767766 543

>smart00426 TEA TEA domain

Probab=84.73  E-value=1.2  Score=37.14  Aligned_cols=18  Identities=33%  Similarity=0.756  Sum_probs=16.5

Q ss_pred             cCCHHHHHHHHHHHHHhC
Q 011788          262 RWTPELHEAFVEAVNQLG  279 (477)
Q Consensus       262 rWT~ELH~rFV~AV~qLG  279 (477)
                      .|.++|-..|++|+...-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            699999999999998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313
           KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	5e-26

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 99.6 bits (248), Expect = 5e-26
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 315 YRP 317
            + 
Sbjct: 61  KKV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	92.93
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	91.79
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	91.16
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	85.15
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	83.9
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	83.6
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	81.39
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	81.07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=2.2e-28  Score=194.70  Aligned_cols=61  Identities=54%  Similarity=0.822  Sum_probs=58.2

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011788          255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (477)
Q Consensus       255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r  316 (477)
                      +.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...|
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999 699999999999999999999999999999998765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=92.93  E-value=0.25  Score=40.12  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR  311 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR  311 (477)
                      ...+-.||+|=+.+|++||..+|+    .=+.|-++|+  +-|..+++.|.++|-
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            344678999999999999999994    2367777764  799999999999883

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.79  E-value=0.35  Score=37.95  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=41.9

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCCCHHHHHHHHhhhhhccc
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATP---KGVLKLMKVEGLTIYHVKSHLQKYRTARY  315 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVKSHLQKYRl~~~  315 (477)
                      ...+-.||+|=+++|++||..+|. +...|   +.|-+.  |+|-|..+|+.|.++|-....
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHHH
Confidence            344558999999999999999992 32222   334444  478999999999999976544

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=91.16  E-value=0.64  Score=36.39  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=42.9

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r  316 (477)
                      ...+-.||+|=++.|+++|.++|-    .=+.|-++  ++|-|-.+||.|.++|-..+.+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHh
Confidence            455668999999999999999993    34566555  4789999999999998655433

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=85.15  E-value=1.2  Score=33.75  Aligned_cols=51  Identities=25%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT  312 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl  312 (477)
                      .-.|-.||+|=.+++++||.++| ..  .=+.|-+.|  +|-|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            45566899999999999999999 11  235666666  68999999999988754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=83.90  E-value=1.6  Score=42.48  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=42.9

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA  313 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~  313 (477)
                      .+..-+||+|=++.|++|+...|-    .=..|-++  |++=|..+||.|.++||..
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            467789999999999999999992    25667666  5789999999999999853

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=83.60  E-value=3.4  Score=33.04  Aligned_cols=48  Identities=17%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCCCChHH---HHhhcCCCCCCHHHHHHHHhhhhhcc
Q 011788          261 MRWTPELHEAFVEAVNQLGGSERATPKG---VLKLMKVEGLTIYHVKSHLQKYRTAR  314 (477)
Q Consensus       261 lrWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVKSHLQKYRl~~  314 (477)
                      -.||.|=+.+|+.|+..+++   -||.+   |-+.|   |-|..+|+.|-+++....
T Consensus         9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence            36999999999999999984   24554   44555   689999999988886553

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=81.39  E-value=1.1  Score=37.42  Aligned_cols=58  Identities=24%  Similarity=0.330  Sum_probs=37.8

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHh---hc-C-------------CCCCCHHHHHHHHhhhhhcccC
Q 011788          257 AKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLK---LM-K-------------VEGLTIYHVKSHLQKYRTARYR  316 (477)
Q Consensus       257 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~---lM-~-------------v~gLT~~hVKSHLQKYRl~~~r  316 (477)
                      ++..-+|.++|-..|++|+...-=....+  -+|.   .| |             -.--|..+|.||||.-|..+.+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            45566899999999999998876211222  2221   11 1             1446888999999987765443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=81.07  E-value=2.5  Score=44.83  Aligned_cols=53  Identities=23%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcc
Q 011788          256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR  314 (477)
Q Consensus       256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~  314 (477)
                      ..+..-+||+|=|..|++||.+.|-    .=+.|-++++-  =|..+|++|.++||...
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence            3466789999999999999999992    35677777654  69999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	7e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.6 bits (222), Expect = 7e-23
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTAR 314
           A  KPR+ WT ELH  F+ AV+ LG  ERA PK +L LM V+ LT  +V SHLQK+R A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 315 YR 316
            +
Sbjct: 61  KK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	93.18
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	90.47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=5.8e-26  Score=178.75  Aligned_cols=61  Identities=54%  Similarity=0.809  Sum_probs=57.8

Q ss_pred             CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011788          255 APAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (477)
Q Consensus       255 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r  316 (477)
                      +.+|+|++||+|||++||+||++||+ ++|+||.|+++|+|+|||+.||+|||||||+...+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999985 89999999999999999999999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.15  Score=37.26  Aligned_cols=51  Identities=25%  Similarity=0.430  Sum_probs=41.2

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccC
Q 011788          260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYR  316 (477)
Q Consensus       260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r  316 (477)
                      .++||+|=+..|++||..+|.    .=..|-++|  +|-|..+|++|.++|.....+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence            468999999999999999994    345666665  589999999999998655443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.27  Score=34.38  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=35.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011788          262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY  310 (477)
Q Consensus       262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY  310 (477)
                      .||.|=+.+|++||.+.| ..  -=+.|-+.|+  |-|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999999 11  2456666665  78999999999887