BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011789
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/488 (32%), Positives = 261/488 (53%), Gaps = 32/488 (6%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGS 60
M +KPH + I YP+QGH+NP +LA L +GF ITFVNT + H+++ K+ G
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSR---GP 57
Query: 61 DIFAGVRKSGLDIRYMTLSDGL-PLGFDRSLNHE--QFMSSLLHVFSAHAEEVIGQIVRS 117
F G D + ++ DGL P+ D ++ + S+ F E++ ++ S
Sbjct: 58 KAFDGFT----DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHS 113
Query: 118 GE--NVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCYD- 174
V CL++D + + A++F L + +++ SA H G D
Sbjct: 114 TNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDE 173
Query: 175 ------CREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADY-VLCN 227
C E +D+IPG+K KD +++ T+ + F D N D +L N
Sbjct: 174 SYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEF-FIEVADRVNKDTTILLN 232
Query: 228 TVHELESEAVTALKAKIPFI-TMGPI-SLNKFSDRV-----VATSLWSE-SDCSQWLDKQ 279
T +ELES+ + AL + IP I +GP+ SL K + ++ + ++LW E ++C WL+ +
Sbjct: 233 TFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK 292
Query: 280 PKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV 339
GSV+YV+FGS ++ L+E A G+A K +F+WI+RPD+V +F E+
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV-IFSSEFTNEI 351
Query: 340 ADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAV 399
ADR +I +WC Q VL HP+IGGFLTHCGWNS E + GVP+LC+P + DQ T+ +
Sbjct: 352 ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC 411
Query: 400 DDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKN 459
++W +G+ + + +EE++K ++ ++ G K + A ++KK E +P G S N
Sbjct: 412 NEWEIGMEIDTN--VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMN 469
Query: 460 MDQFIKDL 467
+++ IKD+
Sbjct: 470 LNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 222/481 (46%), Gaps = 46/481 (9%)
Query: 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLAS-QGFTITFV-----NTHFIHQQMTKASPE 57
+++ PH I P GH+ P V+ A +L G T+TFV + + + P
Sbjct: 2 EESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPS 61
Query: 58 MGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRS 117
S +F + + L+D S E +S + + +V V
Sbjct: 62 SISSVF---------LPPVDLTD-----LSSSTRIESRISLTVTRSNPELRKVFDSFVEG 107
Query: 118 GENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCYDCRE 177
G L+ D + +A +F + F+ +A V + + HL L + + E
Sbjct: 108 GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTE 167
Query: 178 DTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAV 237
+ +PG + KD Q D ++ + ++ + + A+ +L NT ELE A+
Sbjct: 168 PLM--LPGCVPVAGKDFLDPAQ--DRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAI 223
Query: 238 TALKA----KIPFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYA 293
AL+ K P +GP+ +N T ES+C +WLD QP GSVLYVSFGS
Sbjct: 224 KALQEPGLDKPPVYPVGPL-VNIGKQEAKQTE---ESECLKWLDNQPLGSVLYVSFGSGG 279
Query: 294 HVSKRDLIEIANGIAKSKVTFIWILRP----------DIVSSDDP-NPLPEDFKKEVADR 342
++ L E+A G+A S+ F+W++R D S DP LP F + R
Sbjct: 280 TLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKR 339
Query: 343 SMIIT-WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDD 401
+I W Q VLAHP+ GGFLTHCGWNS LE + G+PL+ +PLY +Q N L +D
Sbjct: 340 GFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 402 WNVGL--NLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKN 459
L ++ ++ +EEV++ V LM + G RN K++K+A L+ +G+S K
Sbjct: 400 IRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKA 459
Query: 460 M 460
+
Sbjct: 460 L 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 213/468 (45%), Gaps = 44/468 (9%)
Query: 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQG-------FTITFVNTHFIHQQMTKASPEM 58
T PH +++P H P + + +LA+ F+ + N H M
Sbjct: 5 TTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQ--- 61
Query: 59 GSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQ----- 113
+I+ +SDG+P G+ + ++ + +F+ A E Q
Sbjct: 62 ------------CNIKSYDISDGVPEGYVFAGRPQE----DIELFTRAAPESFRQGMVMA 105
Query: 114 IVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCY 173
+ +G V CL+AD + + + +A + G+ ++ FWT + + ++D +
Sbjct: 106 VAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGI 165
Query: 174 DCREDTI-DYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHEL 232
RED + ++IPG+ + +D + + S +++ Q A V N+ EL
Sbjct: 166 QGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 233 ESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGS 291
+ LK+K+ ++ +GP +L V T+ C QWL ++ SV+Y+SFG+
Sbjct: 226 DDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTT-----GCLQWLKERKPTSVVYISFGT 280
Query: 292 YAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQ 351
+++ ++ + S+V FIW LR LPE F ++ M++ W Q
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLRDKARVH-----LPEGFLEKTRGYGMVVPWAPQ 335
Query: 352 TSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNE 411
VLAH A+G F+THCGWNS+ E + GVPL+C P + DQ N ++ D +G+ +
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEG- 394
Query: 412 KVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKN 459
V TK + ++ ++ G K R + +++ + A+ P GSS +N
Sbjct: 395 GVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTEN 442
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 211/463 (45%), Gaps = 34/463 (7%)
Query: 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKS 69
H +++P H P + L K+A++ +TF T +F+ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDT---------LFSRSNEF 65
Query: 70 GLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIV-RSGENVHCLIADT 128
+I+Y + DGLP G+ S N + + + + + VI + V +G+N+ CL+ D
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDA 125
Query: 129 YFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLL-TINGHFQCYDCREDTIDYIPGVK 187
+F + + LA++ ++ WT + + DL+ G + +D + +ID +PG
Sbjct: 126 FFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVK--SIDVLPGFP 183
Query: 188 AINPKD-TTSYLQETDTTSACHQIIFNSFQDTRNADYVLCN---TVHEL-ESEAVTALKA 242
+ D +++ D A ++ + A+ V N T+H L E+E + K
Sbjct: 184 ELKASDLPEGVIKDIDVPFAT--MLHKMGLELPRANAVAINSFATIHPLIENELNSKFKL 241
Query: 243 KIPFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIE 302
+ +GP +L +V E C +WLD+ SV+Y+SFGS +L
Sbjct: 242 ---LLNVGPFNLTTPQRKVS-----DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTA 293
Query: 303 IANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGG 362
+A + + FIW R D LP+ F + + I+ W Q +L H ++G
Sbjct: 294 LAESLEECGFPFIWSFR-----GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGV 348
Query: 363 FLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKN 422
FLTH GWNSVLE + GVP++ P + DQ N L +G+ + N V+TKE + K
Sbjct: 349 FLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN-GVLTKESIKKA 407
Query: 423 VHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIK 465
+ L M + G R ++K++ A++ NG+S + I+
Sbjct: 408 LELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 206/476 (43%), Gaps = 47/476 (9%)
Query: 12 IFISYPLQGHVNPSVQLALKLASQG-------FTITFVNTHFIHQQMTKASPEMGSDIFA 64
IFI P GH+ +++ A L + F I F F +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKS----------- 61
Query: 65 GVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCL 124
V S I+ + L + P + + E ++ + L H + I I+ + V L
Sbjct: 62 -VLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN--KVVGL 118
Query: 125 IADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCYDCREDTIDYIP 184
+ D + V + +FG+ F T + +L L I F D R+ + IP
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD-RDHQLLNIP 177
Query: 185 GVKAINPKDT-TSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTAL--- 240
G+ P + D + + F+DT+ ++ NT +LE ++ AL
Sbjct: 178 GISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKG---IIVNTFSDLEQSSIDALYDH 234
Query: 241 KAKIPFI-TMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYA-HVSKR 298
KIP I +GP+ L+ +WLD+QP SV+++ FGS
Sbjct: 235 DEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 299 DLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKK--EVADRSMIITWCCQTSVLA 356
+ EIA G+ S V F+W +S + PE F + E+ + MI W Q VLA
Sbjct: 294 QIREIALGLKHSGVRFLW------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLA 347
Query: 357 HPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNL-----SNE 411
H AIGGF++HCGWNS+LE +W GVP+L +P+Y +Q N V +W VGL L
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407
Query: 412 KVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467
V+ EE+ K + LM + S + +++K+ A+ GSS ++ + I D+
Sbjct: 408 DVVAAEEIEKGLKDLMDKDSIVHKK--VQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 206/476 (43%), Gaps = 47/476 (9%)
Query: 12 IFISYPLQGHVNPSVQLALKLASQG-------FTITFVNTHFIHQQMTKASPEMGSDIFA 64
IFI P GH+ +++ A L + F I F F +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKS----------- 61
Query: 65 GVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCL 124
V S I+ + L + P + + E ++ + L H + I I+ + V L
Sbjct: 62 -VLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN--KVVGL 118
Query: 125 IADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCYDCREDTIDYIP 184
+ D + V + +FG+ F T + +L L I F D R+ + IP
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD-RDHQLLNIP 177
Query: 185 GVKAINPKDT-TSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTAL--- 240
G+ P + D + + F+DT+ ++ NT +LE ++ AL
Sbjct: 178 GISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKG---IIVNTFSDLEQSSIDALYDH 234
Query: 241 KAKIPFI-TMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYA-HVSKR 298
KIP I +GP+ L+ +WLD+QP SV+++ FGS
Sbjct: 235 DEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 299 DLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKK--EVADRSMIITWCCQTSVLA 356
+ EIA G+ S V F+W +S + PE F + E+ + MI W Q VLA
Sbjct: 294 QIREIALGLKHSGVRFLW------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLA 347
Query: 357 HPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNL-----SNE 411
H AIGGF++HCGWNS+LE +W GVP+L +P+Y +Q N V +W VGL L
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407
Query: 412 KVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467
V+ EE+ K + LM + S + +++K+ A+ GSS ++ + I D+
Sbjct: 408 DVVAAEEIEKGLKDLMDKDSIVHKK--VQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 343 SMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTN 394
+ + W Q +L HP F+TH G N + E ++ G+P + PL+ DQ N
Sbjct: 70 TRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 338 EVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTN--- 394
E+ D + W Q ++L + F+TH G EGL P++ P DQF N
Sbjct: 280 ELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM 337
Query: 395 -------RKLAVDDWNVG-LNLSNEKVITKEEVSKNVHLLMGE--KSGAKYRNA 438
RKLA ++ L + ++ EV++ + + E + G R A
Sbjct: 338 LQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAA 391
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFV 42
+T H S GHVNPS+++ +L ++G +T+
Sbjct: 3 TQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYA 41
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 338 EVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKL 397
EV + W Q +L + F+TH G S +E L VP++ P +Q N +
Sbjct: 302 EVPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER 359
Query: 398 AVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQ 441
V + +G ++ ++V T E++ + V + + A+ A +Q
Sbjct: 360 IV-ELGLGRHIPRDQV-TAEKLREAVLAVASDPGVAERLAAVRQ 401
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKAS 55
H F + P GHVNPS+ + +L ++G +++ T Q+ A
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG 59
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 245 PFITMGPISLNK--FSDR-----VVATSLWSESDCSQWLDKQPKGSVL-YVSFGSYAHVS 296
PFI + P SL + F R + + D WL + L Y++ G+ + +
Sbjct: 197 PFIDIFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSSGGT 256
Query: 297 KRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLA 356
L +G+A L D++ + P+ L EV + +W Q ++L
Sbjct: 257 VEVLRAAIDGLAG--------LDADVLVASGPS-LDVSGLGEVPANVRLESWVPQAALLP 307
Query: 357 HPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQF 392
H + + H G + L L GVP L FP D F
Sbjct: 308 H--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASP 56
+AGN+ Q +A + G + + LA LA++G TI V FI QMT A P
Sbjct: 335 IAGNRGQTNYATTKA----GMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIP 386
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASP 56
+AGN+ Q +A + G + + LA LA++G TI V FI QMT A P
Sbjct: 359 IAGNRGQTNYATTKA----GMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIP 410
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASP 56
+AGN+ Q +A + G + + LA LA++G TI V FI QMT A P
Sbjct: 343 IAGNRGQTNYATTKA----GMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIP 394
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASP 56
+AGN+ Q +A + G + + LA LA++G TI V FI QMT A P
Sbjct: 351 IAGNRGQTNYATTKA----GMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIP 402
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASP 56
+AGN+ Q +A + G + + LA LA++G TI V FI QMT A P
Sbjct: 372 IAGNRGQTNYATTKA----GMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIP 423
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 366 HCGWNSVLEGLWCGVPLLCFPLYTDQF--TNRKLAVDDWNVGLNLSNEKVITKEEVSKNV 423
H G +V+ + G+P L P DQF T R+ AV +GL +++KV + +
Sbjct: 306 HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTARE-AVSRRGIGLVSTSDKVD-----ADLL 359
Query: 424 HLLMGEKSGAKYRNAAKQVKKAM 446
L+G++S R AA++V++ M
Sbjct: 360 RRLIGDES---LRTAAREVREEM 379
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 17/155 (10%)
Query: 262 VATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPD 321
V +L W +P VL VS G+ + A A + W +
Sbjct: 211 VGPTLTGRDGQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTP----WHVVXA 266
Query: 322 IVSSDDP---NPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWC 378
I DP PLP + + W SVLAH LTH +VLE
Sbjct: 267 IGGFLDPAVLGPLPPNVEAH--------QWIPFHSVLAH--ARACLTHGTTGAVLEAFAA 316
Query: 379 GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKV 413
GVPL+ P + + V + +G L +++
Sbjct: 317 GVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQL 351
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEM 58
H +F + GHV PS+ L +LA +G IT+V T ++ A E+
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEV 54
>pdb|3M3G|A Chain A, Crystal Structure Of Sm1, An Elicitor Of Plant Defence
Responses From Trichoderma Virens
Length = 120
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 321 DIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGV 380
D+ SD PN L + W Q + P IGG GWNS CG
Sbjct: 18 DVSCSDGPNGLETRYH-----------WSTQGQIPRFPYIGGAAAVAGWNSAS----CGT 62
Query: 381 PLLCFPLYTDQFTNRKLAVDDWNVGLNLS 409
C+ L T LAVD G N++
Sbjct: 63 ---CWKLQYSGHTIYVLAVDHAASGFNIA 88
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 142 LYYISFWTESALVFTLYYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPK 192
+ +IS + ++ + + H D++T H R I Y GVKA++PK
Sbjct: 238 MAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPK 288
>pdb|3QNZ|B Chain B, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 220
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKA 54
G V P L L A+ GFT++ N H++ Q K
Sbjct: 10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKG 44
>pdb|3M8O|H Chain H, Human Iga1 Fab Fragment
pdb|3QNX|B Chain B, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing
Same Fv As Igg
pdb|3QNY|B Chain B, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|D Chain D, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
Length = 221
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKA 54
G V P L L A+ GFT++ N H++ Q K
Sbjct: 10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKG 44
>pdb|3R06|B Chain B, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|D Chain D, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|F Chain F, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|H Chain H, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R08|H Chain H, Crystal Structure Of Mouse Cd3epsilon In Complex With
Antibody 2c11 Fab
Length = 216
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRY 75
G V P L L + GFT + H++ Q +P G + A + S ++I+Y
Sbjct: 10 GLVQPGKSLKLSCEASGFTFSGYGMHWVRQ-----APGRGLESVAYITSSSINIKY 60
>pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa
pdb|1R24|D Chain D, Fab From Murine Igg3 Kappa
Length = 217
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRY 75
G V P L A+ GFT + H++ Q +PE G + A + G I Y
Sbjct: 10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQ-----APEKGLEWVAYISSGGSSINY 60
>pdb|1BZ7|B Chain B, Fab Fragment From Murine Ascites
Length = 217
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRY 75
G V P L A+ GFT + H++ Q +PE G + A + G I Y
Sbjct: 10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQ-----APEKGLEWVAYISSGGSSINY 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,003,196
Number of Sequences: 62578
Number of extensions: 584042
Number of successful extensions: 1792
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 35
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)