Query 011789
Match_columns 477
No_of_seqs 130 out of 1487
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 1.2E-66 2.6E-71 523.2 47.8 463 4-476 3-476 (480)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.3E-66 5.1E-71 519.4 48.2 439 5-469 4-450 (451)
3 PLN02173 UDP-glucosyl transfer 100.0 6.1E-65 1.3E-69 506.8 45.6 430 5-468 2-447 (449)
4 PLN02562 UDP-glycosyltransfera 100.0 1.4E-64 3E-69 508.2 45.6 434 7-468 5-448 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 3.2E-64 6.9E-69 506.0 46.3 439 1-468 1-454 (456)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.4E-64 2E-68 504.0 44.4 447 5-469 6-471 (477)
7 PLN02152 indole-3-acetate beta 100.0 6.8E-63 1.5E-67 492.9 45.0 432 9-467 4-454 (455)
8 PLN02448 UDP-glycosyltransfera 100.0 6.9E-63 1.5E-67 499.6 45.2 438 3-469 5-457 (459)
9 PLN02207 UDP-glycosyltransfera 100.0 1.7E-62 3.7E-67 491.0 44.8 443 9-469 4-465 (468)
10 PLN02554 UDP-glycosyltransfera 100.0 1.6E-62 3.4E-67 498.7 44.6 443 8-472 2-481 (481)
11 PLN02992 coniferyl-alcohol glu 100.0 4.4E-62 9.5E-67 488.9 45.7 435 6-471 3-471 (481)
12 PLN03007 UDP-glucosyltransfera 100.0 4E-62 8.7E-67 496.5 45.6 452 4-470 1-481 (482)
13 PLN02670 transferase, transfer 100.0 3.6E-62 7.8E-67 489.2 43.7 444 6-472 4-468 (472)
14 PLN02534 UDP-glycosyltransfera 100.0 1.6E-61 3.4E-66 486.8 44.0 447 4-469 4-486 (491)
15 PLN00164 glucosyltransferase; 100.0 3.4E-61 7.3E-66 487.1 44.7 441 8-470 3-474 (480)
16 PLN03004 UDP-glycosyltransfera 100.0 5.4E-61 1.2E-65 478.7 41.8 433 7-458 2-450 (451)
17 PLN02208 glycosyltransferase f 100.0 8.2E-61 1.8E-65 478.2 43.1 418 6-470 2-440 (442)
18 PLN02764 glycosyltransferase f 100.0 1.3E-60 2.8E-65 474.1 43.9 428 6-473 3-449 (453)
19 PLN03015 UDP-glucosyl transfer 100.0 4.3E-60 9.2E-65 471.8 44.8 438 8-467 3-466 (470)
20 PLN02167 UDP-glycosyltransfera 100.0 5E-60 1.1E-64 479.7 44.2 444 8-469 3-472 (475)
21 PLN00414 glycosyltransferase f 100.0 2E-59 4.2E-64 468.8 42.6 417 7-470 3-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.2E-49 7E-54 402.4 30.4 394 9-448 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.2E-51 7E-56 423.8 -2.0 390 10-449 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 6.3E-43 1.4E-47 350.8 34.5 359 14-448 1-375 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.5E-43 5.5E-48 355.1 24.9 363 9-448 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 8.2E-41 1.8E-45 332.0 24.9 389 8-469 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 5.4E-41 1.2E-45 347.5 21.6 407 8-448 5-438 (496)
28 PRK12446 undecaprenyldiphospho 99.9 3.1E-25 6.7E-30 217.7 26.0 308 8-430 1-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.6E-24 3.5E-29 211.4 25.9 304 9-426 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.6E-21 5.6E-26 187.8 29.8 310 9-430 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 9.5E-22 2.1E-26 191.7 23.6 123 282-430 188-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.9E-19 1.1E-23 175.6 27.5 342 8-467 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.1E-17 4.5E-22 163.5 27.0 320 10-441 1-333 (350)
34 COG4671 Predicted glycosyl tra 99.8 4.5E-16 9.7E-21 144.1 24.7 331 6-428 7-364 (400)
35 TIGR01133 murG undecaprenyldip 99.7 4.9E-15 1.1E-19 146.4 29.1 314 9-439 1-328 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.7 4.9E-16 1.1E-20 154.8 20.9 345 9-461 6-380 (385)
37 TIGR03590 PseG pseudaminic aci 99.7 3.1E-15 6.8E-20 142.2 22.6 104 283-398 171-279 (279)
38 PRK13609 diacylglycerol glucos 99.7 6.5E-15 1.4E-19 147.3 23.5 133 281-430 201-339 (380)
39 PRK13608 diacylglycerol glucos 99.6 1.4E-13 3.1E-18 137.8 25.3 165 280-468 200-370 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 2.3E-13 4.9E-18 136.2 23.3 106 352-467 256-375 (380)
41 PLN02605 monogalactosyldiacylg 99.5 1.4E-11 3E-16 123.2 27.7 136 280-430 204-349 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 1.5E-15 3.3E-20 133.5 -4.0 136 284-430 1-145 (167)
43 TIGR03492 conserved hypothetic 99.4 5.2E-11 1.1E-15 118.9 26.1 330 18-440 6-372 (396)
44 PF03033 Glyco_transf_28: Glyc 99.4 3.7E-13 8.1E-18 114.4 6.8 123 11-153 1-133 (139)
45 cd03814 GT1_like_2 This family 99.4 1.8E-09 3.8E-14 106.6 30.7 157 283-466 197-362 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 3.4E-09 7.4E-14 108.9 30.6 138 283-441 263-413 (465)
47 COG3980 spsG Spore coat polysa 99.3 2.2E-10 4.7E-15 103.6 17.9 147 282-447 158-308 (318)
48 cd03823 GT1_ExpE7_like This fa 99.3 5.1E-09 1.1E-13 103.0 29.3 131 281-430 189-330 (359)
49 cd03800 GT1_Sucrose_synthase T 99.2 1.2E-08 2.6E-13 102.4 28.3 81 340-430 282-369 (398)
50 cd03818 GT1_ExpC_like This fam 99.2 7.9E-08 1.7E-12 96.8 33.2 82 341-430 281-367 (396)
51 cd03808 GT1_cap1E_like This fa 99.2 6.2E-08 1.3E-12 94.9 31.6 314 10-430 1-330 (359)
52 cd03794 GT1_wbuB_like This fam 99.2 8E-09 1.7E-13 102.5 25.4 131 281-430 218-366 (394)
53 cd03816 GT1_ALG1_like This fam 99.2 1.6E-08 3.4E-13 102.4 27.0 91 341-443 294-399 (415)
54 PRK10307 putative glycosyl tra 99.2 7.2E-08 1.6E-12 97.6 31.4 164 283-472 229-410 (412)
55 cd03801 GT1_YqgM_like This fam 99.1 9.4E-08 2E-12 93.7 30.1 82 339-430 254-342 (374)
56 cd03817 GT1_UGDG_like This fam 99.1 7.2E-08 1.6E-12 95.2 29.1 80 340-430 258-344 (374)
57 cd04962 GT1_like_5 This family 99.1 9.6E-08 2.1E-12 95.0 29.0 93 340-442 252-350 (371)
58 cd03798 GT1_wlbH_like This fam 99.1 4.7E-07 1E-11 89.1 31.1 83 340-430 258-345 (377)
59 TIGR03449 mycothiol_MshA UDP-N 99.0 3.1E-07 6.8E-12 92.7 29.4 81 340-430 282-369 (405)
60 cd03825 GT1_wcfI_like This fam 99.0 2.3E-07 5.1E-12 91.8 27.8 114 339-468 242-363 (365)
61 cd03796 GT1_PIG-A_like This fa 99.0 3.3E-07 7.1E-12 92.3 29.0 114 340-471 249-369 (398)
62 cd03795 GT1_like_4 This family 99.0 2.1E-07 4.6E-12 91.8 27.2 141 283-442 191-346 (357)
63 cd03820 GT1_amsD_like This fam 99.0 5.6E-07 1.2E-11 87.7 27.8 90 341-443 235-330 (348)
64 TIGR02468 sucrsPsyn_pln sucros 99.0 1.5E-06 3.2E-11 94.4 31.7 393 5-443 166-652 (1050)
65 cd03805 GT1_ALG2_like This fam 99.0 2.2E-06 4.7E-11 86.1 31.3 80 340-430 279-365 (392)
66 PRK05749 3-deoxy-D-manno-octul 99.0 2.3E-07 4.9E-12 94.4 24.2 81 343-430 304-389 (425)
67 TIGR00236 wecB UDP-N-acetylglu 98.9 1E-07 2.2E-12 94.9 20.5 135 283-440 198-342 (365)
68 cd03821 GT1_Bme6_like This fam 98.9 1.6E-06 3.5E-11 85.4 28.3 81 340-430 261-346 (375)
69 cd03819 GT1_WavL_like This fam 98.9 2.8E-06 6E-11 83.8 29.5 150 281-443 183-346 (355)
70 TIGR02472 sucr_P_syn_N sucrose 98.9 2.7E-06 5.9E-11 86.8 28.6 82 339-430 315-407 (439)
71 PRK09922 UDP-D-galactose:(gluc 98.9 1.6E-06 3.5E-11 86.1 26.2 134 283-430 180-325 (359)
72 PRK14089 ipid-A-disaccharide s 98.9 2.5E-07 5.4E-12 90.1 19.1 145 283-446 168-332 (347)
73 cd03822 GT1_ecORF704_like This 98.8 1.4E-05 3.1E-10 78.7 32.0 81 339-430 245-335 (366)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 9.1E-07 2E-11 87.9 22.2 134 281-430 197-338 (363)
75 cd03802 GT1_AviGT4_like This f 98.8 2.1E-06 4.5E-11 84.0 24.2 130 284-430 172-309 (335)
76 cd05844 GT1_like_7 Glycosyltra 98.8 3.3E-06 7.1E-11 83.8 25.3 82 339-430 243-337 (367)
77 cd03799 GT1_amsK_like This is 98.8 1.9E-05 4.2E-10 77.7 30.3 83 340-430 235-328 (355)
78 PF04007 DUF354: Protein of un 98.8 9.9E-06 2.2E-10 78.3 27.0 299 9-427 1-308 (335)
79 cd03811 GT1_WabH_like This fam 98.8 2.9E-06 6.4E-11 82.6 24.0 81 340-430 245-333 (353)
80 cd04951 GT1_WbdM_like This fam 98.8 3.9E-06 8.4E-11 82.8 24.6 108 340-466 244-357 (360)
81 cd04955 GT1_like_6 This family 98.7 5.6E-06 1.2E-10 81.9 24.7 155 285-466 195-361 (363)
82 TIGR02470 sucr_synth sucrose s 98.6 0.00018 3.8E-09 76.8 34.0 83 340-430 618-714 (784)
83 cd03812 GT1_CapH_like This fam 98.6 2.2E-05 4.8E-10 77.4 26.2 86 340-439 248-338 (358)
84 TIGR02149 glgA_Coryne glycogen 98.6 2.8E-05 6.1E-10 77.9 27.1 131 283-430 201-353 (388)
85 COG1519 KdtA 3-deoxy-D-manno-o 98.6 4.2E-05 9E-10 74.4 26.5 319 12-447 52-405 (419)
86 cd03807 GT1_WbnK_like This fam 98.6 5.2E-05 1.1E-09 74.3 28.5 78 341-430 251-333 (365)
87 TIGR03088 stp2 sugar transfera 98.6 5E-05 1.1E-09 75.7 27.9 80 341-430 255-339 (374)
88 cd03809 GT1_mtfB_like This fam 98.6 7.2E-06 1.6E-10 80.8 21.5 91 339-444 251-348 (365)
89 PLN02275 transferase, transfer 98.6 6.9E-05 1.5E-09 74.7 27.6 75 341-427 286-371 (371)
90 PRK15427 colanic acid biosynth 98.5 0.00011 2.3E-09 74.2 28.3 112 340-468 278-404 (406)
91 PLN00142 sucrose synthase 98.5 7.7E-05 1.7E-09 79.6 26.5 80 341-430 642-737 (815)
92 TIGR03087 stp1 sugar transfera 98.5 6.6E-06 1.4E-10 82.8 17.6 79 340-430 279-363 (397)
93 PLN02846 digalactosyldiacylgly 98.5 9.2E-05 2E-09 74.8 25.2 123 285-430 230-364 (462)
94 PF02684 LpxB: Lipid-A-disacch 98.4 6.9E-05 1.5E-09 73.6 22.8 194 246-459 155-367 (373)
95 PRK01021 lpxB lipid-A-disaccha 98.4 0.00014 3.1E-09 74.7 25.2 345 9-462 227-601 (608)
96 PLN02949 transferase, transfer 98.4 0.00055 1.2E-08 70.0 29.4 117 340-474 334-461 (463)
97 cd03806 GT1_ALG11_like This fa 98.4 0.00028 6.1E-09 71.5 27.0 81 339-430 303-393 (419)
98 cd03792 GT1_Trehalose_phosphor 98.4 5.2E-05 1.1E-09 75.6 21.2 111 340-468 251-370 (372)
99 PRK15179 Vi polysaccharide bio 98.3 0.0016 3.4E-08 69.5 31.0 92 340-442 573-673 (694)
100 KOG3349 Predicted glycosyltran 98.3 3.5E-06 7.6E-11 69.2 7.5 113 283-404 4-128 (170)
101 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 5.3E-05 1.1E-09 75.1 17.3 128 282-427 201-337 (365)
102 PRK00654 glgA glycogen synthas 98.2 0.0028 6E-08 65.3 29.1 132 282-428 281-427 (466)
103 COG0763 LpxB Lipid A disacchar 98.1 0.0007 1.5E-08 65.3 21.7 351 8-467 1-379 (381)
104 PF02350 Epimerase_2: UDP-N-ac 98.1 5.2E-05 1.1E-09 74.5 13.8 133 280-430 178-319 (346)
105 cd04950 GT1_like_1 Glycosyltra 98.0 0.012 2.7E-07 58.6 28.6 78 341-430 254-341 (373)
106 COG0381 WecB UDP-N-acetylgluco 98.0 0.0039 8.5E-08 60.4 23.4 326 7-440 2-349 (383)
107 TIGR02918 accessory Sec system 98.0 0.0024 5.1E-08 66.0 23.6 149 283-447 319-485 (500)
108 cd04946 GT1_AmsK_like This fam 98.0 0.00053 1.2E-08 69.2 18.3 160 282-464 229-406 (407)
109 TIGR02095 glgA glycogen/starch 97.9 0.014 3E-07 60.3 28.8 133 283-428 291-436 (473)
110 PLN02316 synthase/transferase 97.9 0.018 3.8E-07 63.6 29.8 118 340-468 899-1032(1036)
111 cd03791 GT1_Glycogen_synthase_ 97.9 0.018 3.8E-07 59.5 28.5 130 282-428 295-441 (476)
112 cd04949 GT1_gtfA_like This fam 97.9 0.00072 1.6E-08 67.3 17.6 101 340-447 260-364 (372)
113 PF13844 Glyco_transf_41: Glyc 97.9 0.00036 7.9E-09 70.0 14.6 169 281-472 283-465 (468)
114 cd03804 GT1_wbaZ_like This fam 97.9 8.6E-05 1.9E-09 73.3 10.3 127 285-430 197-327 (351)
115 PRK15484 lipopolysaccharide 1, 97.8 0.0011 2.4E-08 66.2 17.7 84 338-430 254-345 (380)
116 PRK10125 putative glycosyl tra 97.8 0.011 2.5E-07 59.5 24.9 115 284-423 242-365 (405)
117 COG5017 Uncharacterized conser 97.7 0.00037 7.9E-09 56.4 9.2 107 285-408 2-121 (161)
118 cd03813 GT1_like_3 This family 97.7 0.015 3.3E-07 60.0 24.0 82 340-430 353-443 (475)
119 PLN02501 digalactosyldiacylgly 97.7 0.016 3.5E-07 60.7 23.5 76 342-430 602-682 (794)
120 PF00534 Glycos_transf_1: Glyc 97.7 0.00029 6.3E-09 61.7 9.5 90 339-441 71-167 (172)
121 PRK15490 Vi polysaccharide bio 97.5 0.11 2.4E-06 53.7 26.0 74 340-423 454-532 (578)
122 PRK10017 colanic acid biosynth 97.3 0.24 5.2E-06 50.0 30.1 178 273-467 225-422 (426)
123 PRK09814 beta-1,6-galactofuran 97.3 0.0016 3.4E-08 63.9 9.7 110 340-465 206-331 (333)
124 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0011 2.4E-08 55.4 6.2 80 340-429 52-135 (135)
125 PF06722 DUF1205: Protein of u 96.7 0.0045 9.7E-08 48.3 6.1 53 270-322 28-85 (97)
126 PHA01633 putative glycosyl tra 96.5 0.022 4.8E-07 55.4 10.3 102 339-446 199-324 (335)
127 cd01635 Glycosyltransferase_GT 96.4 0.18 3.9E-06 45.5 15.9 48 340-389 160-215 (229)
128 PF13477 Glyco_trans_4_2: Glyc 96.2 0.073 1.6E-06 44.5 10.9 101 10-147 1-105 (139)
129 COG1817 Uncharacterized protei 96.2 0.66 1.4E-05 43.8 17.6 102 17-149 8-112 (346)
130 PRK14098 glycogen synthase; Pr 96.1 0.16 3.5E-06 52.5 15.1 164 283-470 307-486 (489)
131 TIGR02193 heptsyl_trn_I lipopo 96.1 0.55 1.2E-05 45.6 17.9 44 10-53 1-46 (319)
132 COG3914 Spy Predicted O-linked 95.8 0.12 2.7E-06 52.4 11.9 132 280-424 427-573 (620)
133 PF13524 Glyco_trans_1_2: Glyc 95.6 0.1 2.3E-06 40.2 8.7 83 366-464 9-91 (92)
134 PHA01630 putative group 1 glyc 95.5 0.31 6.7E-06 47.7 13.4 111 347-468 196-329 (331)
135 KOG4626 O-linked N-acetylgluco 95.5 0.19 4.2E-06 51.4 11.8 137 281-430 757-905 (966)
136 PF13579 Glyco_trans_4_4: Glyc 95.3 0.041 8.9E-07 46.7 6.0 95 24-147 6-102 (160)
137 TIGR02201 heptsyl_trn_III lipo 94.9 2.2 4.8E-05 41.9 17.6 106 10-147 1-109 (344)
138 COG0859 RfaF ADP-heptose:LPS h 94.6 1.6 3.6E-05 42.6 15.7 106 8-147 1-108 (334)
139 PF12000 Glyco_trans_4_3: Gkyc 94.0 0.76 1.6E-05 40.0 10.5 93 34-147 1-94 (171)
140 PF06258 Mito_fiss_Elm1: Mitoc 92.9 3.3 7.1E-05 40.0 14.0 57 350-408 221-280 (311)
141 PF01975 SurE: Survival protei 92.6 0.37 7.9E-06 43.1 6.5 42 9-51 1-42 (196)
142 PF13439 Glyco_transf_4: Glyco 91.6 2.1 4.7E-05 36.6 10.3 33 18-50 11-43 (177)
143 cd03788 GT1_TPS Trehalose-6-Ph 91.5 2.3 4.9E-05 43.7 11.9 103 346-467 346-459 (460)
144 PLN02939 transferase, transfer 91.4 5.8 0.00013 43.9 15.0 83 340-428 836-930 (977)
145 COG0438 RfaG Glycosyltransfera 91.4 13 0.00028 35.2 16.7 88 341-441 257-351 (381)
146 COG0003 ArsA Predicted ATPase 91.4 2.7 5.8E-05 40.7 11.3 44 8-51 1-45 (322)
147 TIGR02400 trehalose_OtsA alpha 91.3 1.7 3.7E-05 44.5 10.5 103 347-468 342-455 (456)
148 PF02374 ArsA_ATPase: Anion-tr 91.0 1.6 3.4E-05 42.2 9.4 43 9-51 1-44 (305)
149 PRK10422 lipopolysaccharide co 90.6 3.1 6.7E-05 41.0 11.5 110 5-147 2-114 (352)
150 KOG2941 Beta-1,4-mannosyltrans 90.3 18 0.0004 35.0 28.7 128 2-153 6-141 (444)
151 PRK10916 ADP-heptose:LPS hepto 89.4 4.1 9E-05 40.0 11.3 103 9-146 1-106 (348)
152 PRK14099 glycogen synthase; Pr 88.5 17 0.00037 37.6 15.4 118 339-471 348-480 (485)
153 PF02951 GSH-S_N: Prokaryotic 88.3 0.83 1.8E-05 37.1 4.4 40 9-48 1-43 (119)
154 PRK13932 stationary phase surv 88.1 10 0.00022 35.4 12.0 117 6-149 3-133 (257)
155 cd02067 B12-binding B12 bindin 87.8 8.8 0.00019 31.0 10.4 42 10-51 1-42 (119)
156 PF08660 Alg14: Oligosaccharid 87.6 5.2 0.00011 34.9 9.3 114 13-147 2-127 (170)
157 TIGR03713 acc_sec_asp1 accesso 86.4 1.3 2.7E-05 46.2 5.6 93 341-448 409-508 (519)
158 COG2894 MinD Septum formation 86.4 3.2 6.9E-05 37.4 7.2 40 8-47 1-42 (272)
159 TIGR02919 accessory Sec system 85.9 15 0.00032 37.5 12.9 178 219-446 238-425 (438)
160 PF02441 Flavoprotein: Flavopr 84.9 1.4 3E-05 36.5 4.2 42 9-51 1-42 (129)
161 cd01425 RPS2 Ribosomal protein 84.1 5.7 0.00012 35.4 8.1 115 22-151 42-160 (193)
162 PRK10964 ADP-heptose:LPS hepto 83.9 8.5 0.00018 37.3 9.9 45 9-53 1-47 (322)
163 PRK13933 stationary phase surv 83.1 23 0.00051 33.0 11.8 41 9-51 1-41 (253)
164 TIGR00715 precor6x_red precorr 83.0 7.4 0.00016 36.4 8.6 36 9-49 1-36 (256)
165 COG1618 Predicted nucleotide k 83.0 10 0.00022 32.5 8.4 44 5-48 2-45 (179)
166 PRK13935 stationary phase surv 81.7 23 0.00051 32.9 11.2 41 9-51 1-41 (253)
167 PRK02261 methylaspartate mutas 81.4 3.8 8.3E-05 34.3 5.5 45 7-51 2-46 (137)
168 PRK00346 surE 5'(3')-nucleotid 80.8 27 0.00058 32.5 11.3 111 9-149 1-124 (250)
169 PRK12342 hypothetical protein; 80.6 24 0.00051 33.0 10.9 30 120-149 109-144 (254)
170 PRK13934 stationary phase surv 80.1 31 0.00067 32.4 11.4 41 9-51 1-41 (266)
171 PF06925 MGDG_synth: Monogalac 79.8 1.5 3.2E-05 38.2 2.7 22 21-42 1-23 (169)
172 cd03793 GT1_Glycogen_synthase_ 79.6 5.5 0.00012 41.6 7.0 76 350-430 467-553 (590)
173 PLN03063 alpha,alpha-trehalose 79.3 11 0.00023 41.7 9.5 106 348-471 363-479 (797)
174 COG4370 Uncharacterized protei 79.0 4.9 0.00011 37.9 5.7 86 346-441 300-388 (412)
175 TIGR00087 surE 5'/3'-nucleotid 78.9 14 0.00031 34.2 8.9 99 24-149 15-128 (244)
176 COG0052 RpsB Ribosomal protein 78.4 14 0.0003 33.9 8.3 32 120-151 156-189 (252)
177 cd03789 GT1_LPS_heptosyltransf 78.1 25 0.00054 33.2 10.8 103 10-146 1-105 (279)
178 PRK07313 phosphopantothenoylcy 78.0 3.4 7.4E-05 36.4 4.4 43 8-51 1-43 (182)
179 PRK02797 4-alpha-L-fucosyltran 77.4 21 0.00046 34.1 9.6 79 341-426 206-291 (322)
180 PRK06849 hypothetical protein; 77.3 14 0.00031 36.8 9.3 38 7-48 3-40 (389)
181 TIGR02195 heptsyl_trn_II lipop 76.9 19 0.00041 35.0 9.8 102 10-146 1-105 (334)
182 PRK08305 spoVFB dipicolinate s 76.8 4.9 0.00011 35.8 5.0 45 7-51 4-48 (196)
183 PF07429 Glyco_transf_56: 4-al 76.5 35 0.00075 33.2 10.8 81 341-428 245-332 (360)
184 PF12146 Hydrolase_4: Putative 76.2 7.8 0.00017 28.9 5.3 35 8-42 15-49 (79)
185 PRK06029 3-octaprenyl-4-hydrox 75.8 4.3 9.3E-05 35.9 4.4 43 8-51 1-44 (185)
186 PRK12311 rpsB 30S ribosomal pr 75.7 15 0.00032 35.6 8.2 34 119-152 151-186 (326)
187 PF02571 CbiJ: Precorrin-6x re 75.2 5.7 0.00012 37.0 5.2 37 9-51 1-37 (249)
188 COG0496 SurE Predicted acid ph 74.7 18 0.00039 33.5 8.1 99 24-150 15-126 (252)
189 PRK05986 cob(I)alamin adenolsy 74.2 52 0.0011 29.2 10.7 36 8-43 22-57 (191)
190 PF09314 DUF1972: Domain of un 74.1 46 0.001 29.4 10.3 42 8-49 1-47 (185)
191 COG1703 ArgK Putative periplas 74.0 22 0.00048 33.8 8.7 43 9-51 52-94 (323)
192 PF04413 Glycos_transf_N: 3-De 73.8 12 0.00026 33.1 6.7 96 11-147 23-124 (186)
193 PRK05920 aromatic acid decarbo 72.7 6.1 0.00013 35.5 4.6 44 7-51 2-45 (204)
194 PF02142 MGS: MGS-like domain 72.7 8.4 0.00018 29.8 4.9 83 25-145 2-94 (95)
195 PF07015 VirC1: VirC1 protein; 72.6 8.1 0.00018 35.3 5.4 44 8-51 1-45 (231)
196 PF00551 Formyl_trans_N: Formy 72.5 20 0.00044 31.4 7.9 37 9-48 1-40 (181)
197 PF02844 GARS_N: Phosphoribosy 72.4 21 0.00045 28.0 6.9 27 120-146 62-91 (100)
198 TIGR02398 gluc_glyc_Psyn gluco 72.3 51 0.0011 34.1 11.7 109 343-469 364-482 (487)
199 cd02070 corrinoid_protein_B12- 71.3 45 0.00097 29.8 10.0 45 7-51 81-125 (201)
200 COG3640 CooC CO dehydrogenase 71.3 27 0.00059 32.0 8.2 48 9-56 1-50 (255)
201 cd00550 ArsA_ATPase Oxyanion-t 70.7 39 0.00084 31.6 9.8 38 11-48 3-40 (254)
202 PRK08057 cobalt-precorrin-6x r 70.5 32 0.0007 32.0 9.0 34 8-46 2-35 (248)
203 PRK13789 phosphoribosylamine-- 70.0 11 0.00024 38.2 6.4 37 7-48 3-39 (426)
204 COG2910 Putative NADH-flavin r 69.5 6.1 0.00013 34.6 3.6 36 9-48 1-36 (211)
205 COG3660 Predicted nucleoside-d 69.0 1E+02 0.0022 28.9 17.1 36 348-384 235-270 (329)
206 PRK11519 tyrosine kinase; Prov 68.6 38 0.00082 37.0 10.5 125 7-147 524-666 (719)
207 PRK05647 purN phosphoribosylgl 67.7 45 0.00097 29.9 9.1 35 8-45 1-37 (200)
208 PF05159 Capsule_synth: Capsul 67.2 16 0.00036 34.3 6.6 42 343-387 185-226 (269)
209 PRK11199 tyrA bifunctional cho 66.9 44 0.00096 33.2 9.8 37 5-46 95-132 (374)
210 PF00731 AIRC: AIR carboxylase 66.4 81 0.0018 26.8 10.9 139 284-448 2-148 (150)
211 PF01012 ETF: Electron transfe 65.3 21 0.00045 30.7 6.4 105 11-149 2-122 (164)
212 PRK13931 stationary phase surv 63.6 61 0.0013 30.4 9.4 98 25-149 16-129 (261)
213 PRK14501 putative bifunctional 63.5 21 0.00047 39.0 7.4 111 345-470 346-463 (726)
214 KOG0853 Glycosyltransferase [C 63.4 9.4 0.0002 39.0 4.2 66 371-445 381-446 (495)
215 smart00851 MGS MGS-like domain 62.5 65 0.0014 24.4 8.0 27 25-53 2-29 (90)
216 PRK05973 replicative DNA helic 62.4 45 0.00097 30.8 8.2 42 10-51 66-107 (237)
217 PRK01077 cobyrinic acid a,c-di 62.1 46 0.00099 34.1 9.1 37 8-44 3-40 (451)
218 PRK06249 2-dehydropantoate 2-r 62.0 12 0.00025 36.3 4.6 38 5-47 2-39 (313)
219 TIGR02015 BchY chlorophyllide 61.8 45 0.00098 33.8 8.9 33 9-46 286-318 (422)
220 PF02310 B12-binding: B12 bind 61.2 20 0.00044 28.7 5.3 43 9-51 1-43 (121)
221 PF10083 DUF2321: Uncharacteri 60.2 33 0.00071 29.0 6.1 74 385-470 78-152 (158)
222 PF10649 DUF2478: Protein of u 60.0 1.1E+02 0.0024 26.2 9.6 35 12-46 2-37 (159)
223 TIGR02852 spore_dpaB dipicolin 59.4 15 0.00032 32.6 4.3 43 9-51 1-43 (187)
224 cd00561 CobA_CobO_BtuR ATP:cor 59.3 1.2E+02 0.0025 26.2 11.4 33 10-42 4-36 (159)
225 TIGR00347 bioD dethiobiotin sy 58.3 82 0.0018 26.9 8.9 27 16-42 6-32 (166)
226 PF04127 DFP: DNA / pantothena 58.1 10 0.00022 33.5 3.1 38 9-46 4-53 (185)
227 cd03789 GT1_LPS_heptosyltransf 58.0 27 0.00059 32.9 6.3 95 282-385 121-223 (279)
228 PF03446 NAD_binding_2: NAD bi 57.5 13 0.00027 32.1 3.5 31 8-43 1-31 (163)
229 cd01974 Nitrogenase_MoFe_beta 57.1 69 0.0015 32.6 9.4 25 120-147 377-401 (435)
230 cd01423 MGS_CPS_I_III Methylgl 56.7 70 0.0015 25.6 7.6 39 13-54 4-43 (116)
231 COG1748 LYS9 Saccharopine dehy 56.3 68 0.0015 32.0 8.7 39 8-51 1-41 (389)
232 TIGR00708 cobA cob(I)alamin ad 56.3 1.4E+02 0.003 26.1 10.1 33 10-42 7-39 (173)
233 COG0287 TyrA Prephenate dehydr 55.9 96 0.0021 29.4 9.4 40 7-51 2-41 (279)
234 PRK14098 glycogen synthase; Pr 55.8 20 0.00043 37.2 5.2 42 5-46 2-49 (489)
235 PRK06988 putative formyltransf 55.5 70 0.0015 30.9 8.7 34 8-46 2-35 (312)
236 cd01980 Chlide_reductase_Y Chl 55.2 1E+02 0.0022 31.1 10.2 25 120-147 350-374 (416)
237 cd02071 MM_CoA_mut_B12_BD meth 54.8 24 0.00051 28.7 4.6 42 10-51 1-42 (122)
238 PRK05299 rpsB 30S ribosomal pr 54.7 59 0.0013 30.4 7.7 33 119-151 156-190 (258)
239 PF04464 Glyphos_transf: CDP-G 53.8 15 0.00033 36.3 4.0 98 340-448 251-353 (369)
240 PF01210 NAD_Gly3P_dh_N: NAD-d 53.6 10 0.00023 32.4 2.4 32 10-46 1-32 (157)
241 PRK14618 NAD(P)H-dependent gly 53.1 20 0.00043 34.9 4.6 36 6-46 2-37 (328)
242 CHL00072 chlL photochlorophyll 53.0 24 0.00052 33.7 5.0 40 9-48 1-40 (290)
243 PRK00090 bioD dithiobiotin syn 52.9 93 0.002 28.1 8.7 33 11-43 2-35 (222)
244 PRK13886 conjugal transfer pro 52.8 1.9E+02 0.0042 26.7 11.2 40 8-47 1-42 (241)
245 COG1484 DnaC DNA replication p 52.5 22 0.00049 33.2 4.6 46 7-52 104-149 (254)
246 PRK07313 phosphopantothenoylcy 52.4 1.6E+02 0.0036 25.8 10.1 49 379-428 113-179 (182)
247 PRK00994 F420-dependent methyl 52.0 1.7E+02 0.0037 26.8 9.6 39 107-150 52-96 (277)
248 PRK00784 cobyric acid synthase 51.2 2E+02 0.0043 29.8 11.7 37 8-44 1-39 (488)
249 PRK08506 replicative DNA helic 51.2 1.7E+02 0.0037 30.2 11.1 41 11-51 195-235 (472)
250 cd00532 MGS-like MGS-like doma 51.1 1.1E+02 0.0023 24.4 7.8 31 21-53 10-41 (112)
251 TIGR02370 pyl_corrinoid methyl 51.0 35 0.00076 30.5 5.4 45 7-51 83-127 (197)
252 COG0541 Ffh Signal recognition 50.6 46 0.001 33.4 6.4 45 7-51 99-143 (451)
253 COG2085 Predicted dinucleotide 50.6 26 0.00056 31.5 4.4 39 8-51 1-39 (211)
254 CHL00067 rps2 ribosomal protei 50.5 92 0.002 28.6 8.2 34 119-152 160-195 (230)
255 TIGR01011 rpsB_bact ribosomal 50.4 79 0.0017 28.9 7.7 33 119-151 154-188 (225)
256 PRK08229 2-dehydropantoate 2-r 50.4 19 0.00041 35.2 4.0 39 8-51 2-40 (341)
257 PRK06718 precorrin-2 dehydroge 50.1 1E+02 0.0023 27.6 8.3 159 281-464 10-180 (202)
258 cd02032 Bchl_like This family 50.1 26 0.00056 32.9 4.7 38 9-46 1-38 (267)
259 TIGR02195 heptsyl_trn_II lipop 50.0 1.9E+02 0.0042 27.9 11.0 99 9-149 175-278 (334)
260 PRK06395 phosphoribosylamine-- 49.9 1E+02 0.0023 31.3 9.3 33 8-45 2-34 (435)
261 cd01965 Nitrogenase_MoFe_beta_ 49.9 58 0.0013 33.0 7.5 25 120-147 371-395 (428)
262 PRK09841 cryptic autophosphory 49.4 1.2E+02 0.0027 33.1 10.4 125 7-147 529-671 (726)
263 PRK03767 NAD(P)H:quinone oxido 49.4 30 0.00066 30.9 4.8 38 8-45 1-40 (200)
264 TIGR00421 ubiX_pad polyprenyl 49.1 21 0.00047 31.4 3.7 41 10-51 1-41 (181)
265 TIGR00345 arsA arsenite-activa 48.7 1.7E+02 0.0038 27.7 10.1 26 26-51 3-28 (284)
266 KOG1387 Glycosyltransferase [C 48.4 2.8E+02 0.006 27.3 20.7 99 339-448 335-445 (465)
267 PRK14099 glycogen synthase; Pr 47.8 29 0.00064 35.9 5.0 40 7-46 2-47 (485)
268 TIGR01281 DPOR_bchL light-inde 47.8 30 0.00065 32.4 4.8 37 9-45 1-37 (268)
269 PRK06732 phosphopantothenate-- 47.4 26 0.00056 32.2 4.1 20 26-45 30-49 (229)
270 cd01985 ETF The electron trans 47.2 1.4E+02 0.003 26.0 8.6 29 120-148 91-122 (181)
271 COG1090 Predicted nucleoside-d 46.9 1.7E+02 0.0036 27.7 9.1 30 17-48 5-34 (297)
272 COG2185 Sbm Methylmalonyl-CoA 46.9 36 0.00079 28.5 4.4 45 7-51 11-55 (143)
273 PRK12446 undecaprenyldiphospho 46.8 75 0.0016 31.3 7.5 95 284-385 4-120 (352)
274 TIGR02113 coaC_strep phosphopa 46.8 29 0.00062 30.5 4.1 41 10-51 2-42 (177)
275 PRK10916 ADP-heptose:LPS hepto 46.6 76 0.0016 31.1 7.6 101 9-149 181-288 (348)
276 COG1797 CobB Cobyrinic acid a, 46.6 1.2E+02 0.0026 30.7 8.5 28 15-42 8-35 (451)
277 PHA02542 41 41 helicase; Provi 46.6 75 0.0016 32.8 7.6 41 11-51 193-233 (473)
278 PF03808 Glyco_tran_WecB: Glyc 46.5 1.9E+02 0.0042 25.0 9.9 87 220-321 48-136 (172)
279 PF07355 GRDB: Glycine/sarcosi 46.4 47 0.001 32.3 5.6 40 103-147 68-117 (349)
280 PRK05784 phosphoribosylamine-- 46.4 1.3E+02 0.0029 31.1 9.4 34 9-47 1-36 (486)
281 PRK13768 GTPase; Provisional 46.1 89 0.0019 29.1 7.5 41 8-48 1-42 (253)
282 PRK08462 biotin carboxylase; V 46.1 1.1E+02 0.0024 31.2 8.9 38 6-48 2-39 (445)
283 TIGR01501 MthylAspMutase methy 45.9 47 0.001 27.6 5.0 44 8-51 1-44 (134)
284 TIGR01283 nifE nitrogenase mol 45.8 2.2E+02 0.0048 29.1 11.0 25 120-147 395-419 (456)
285 TIGR03600 phage_DnaB phage rep 45.6 1.1E+02 0.0024 30.9 8.8 41 11-51 197-238 (421)
286 PF09001 DUF1890: Domain of un 45.3 19 0.00041 29.8 2.4 35 21-55 12-47 (139)
287 PRK10037 cell division protein 45.3 36 0.00077 31.6 4.8 39 8-46 1-40 (250)
288 PRK07206 hypothetical protein; 45.0 62 0.0014 32.6 6.9 35 8-47 2-36 (416)
289 PRK00094 gpsA NAD(P)H-dependen 44.9 28 0.0006 33.6 4.1 34 8-46 1-34 (325)
290 PRK06904 replicative DNA helic 44.6 1.2E+02 0.0026 31.3 8.8 41 11-51 224-265 (472)
291 PRK08591 acetyl-CoA carboxylas 44.5 1.2E+02 0.0025 31.1 8.8 36 8-48 2-37 (451)
292 PF06564 YhjQ: YhjQ protein; 44.5 41 0.00089 31.1 4.9 38 8-45 1-39 (243)
293 PF01075 Glyco_transf_9: Glyco 44.4 41 0.00089 30.9 5.0 99 8-150 105-211 (247)
294 cd02069 methionine_synthase_B1 44.3 51 0.0011 29.9 5.4 45 7-51 87-131 (213)
295 KOG0780 Signal recognition par 44.2 58 0.0013 32.2 5.9 45 7-51 100-144 (483)
296 COG1348 NifH Nitrogenase subun 44.1 46 0.001 30.5 4.9 44 8-51 1-44 (278)
297 PRK12767 carbamoyl phosphate s 44.0 1.1E+02 0.0024 29.4 8.3 34 8-47 1-36 (326)
298 PRK13230 nitrogenase reductase 43.9 40 0.00087 31.8 5.0 40 8-47 1-40 (279)
299 cd01424 MGS_CPS_II Methylglyox 43.7 1.6E+02 0.0035 23.2 8.3 83 20-146 10-100 (110)
300 TIGR01285 nifN nitrogenase mol 43.6 1.8E+02 0.004 29.5 9.9 87 8-147 311-397 (432)
301 KOG1111 N-acetylglucosaminyltr 43.6 3.4E+02 0.0073 26.9 11.1 45 339-385 250-301 (426)
302 PF02606 LpxK: Tetraacyldisacc 43.5 1.1E+02 0.0023 29.8 7.9 35 14-48 43-77 (326)
303 COG0859 RfaF ADP-heptose:LPS h 43.1 72 0.0016 31.1 6.7 99 8-150 175-279 (334)
304 PRK08006 replicative DNA helic 43.0 1.5E+02 0.0033 30.5 9.3 41 11-51 227-268 (471)
305 TIGR01470 cysG_Nterm siroheme 43.0 2.5E+02 0.0054 25.2 9.8 147 281-449 9-165 (205)
306 PRK14619 NAD(P)H-dependent gly 42.9 36 0.00078 32.8 4.5 35 7-46 3-37 (308)
307 PRK14106 murD UDP-N-acetylmura 42.8 1.8E+02 0.0039 29.6 9.9 34 8-46 5-38 (450)
308 TIGR00521 coaBC_dfp phosphopan 42.7 34 0.00074 34.2 4.4 44 7-51 2-45 (390)
309 PRK05579 bifunctional phosphop 42.6 43 0.00094 33.6 5.1 44 7-51 5-48 (399)
310 PRK05595 replicative DNA helic 42.2 87 0.0019 32.0 7.4 41 11-51 204-245 (444)
311 PRK06522 2-dehydropantoate 2-r 42.2 32 0.00069 32.8 4.0 31 9-44 1-31 (304)
312 PRK04885 ppnK inorganic polyph 42.1 40 0.00087 31.7 4.5 53 358-430 36-94 (265)
313 COG0240 GpsA Glycerol-3-phosph 41.9 80 0.0017 30.6 6.5 35 8-47 1-35 (329)
314 COG4088 Predicted nucleotide k 41.5 34 0.00074 30.8 3.6 39 8-46 1-39 (261)
315 cd02040 NifH NifH gene encodes 41.3 45 0.00098 31.1 4.9 40 8-47 1-40 (270)
316 PRK10427 putative PTS system f 41.2 56 0.0012 26.3 4.6 40 8-47 2-44 (114)
317 PRK14478 nitrogenase molybdenu 41.2 1.3E+02 0.0028 31.1 8.4 25 120-147 393-417 (475)
318 PLN02470 acetolactate synthase 41.1 33 0.00071 36.5 4.3 92 288-386 2-109 (585)
319 TIGR00379 cobB cobyrinic acid 41.1 2.1E+02 0.0046 29.3 9.9 34 11-44 2-36 (449)
320 PRK12921 2-dehydropantoate 2-r 41.1 34 0.00073 32.7 4.0 38 9-51 1-38 (305)
321 TIGR02700 flavo_MJ0208 archaeo 40.9 40 0.00087 31.0 4.3 41 11-51 2-44 (234)
322 PRK13234 nifH nitrogenase redu 40.9 52 0.0011 31.5 5.2 42 6-47 2-43 (295)
323 PRK07417 arogenate dehydrogena 40.8 2.8E+02 0.006 26.1 10.2 33 9-46 1-33 (279)
324 PRK06321 replicative DNA helic 40.8 2.8E+02 0.0061 28.6 10.7 41 11-51 229-270 (472)
325 PRK06756 flavodoxin; Provision 40.6 51 0.0011 27.6 4.6 37 8-44 1-38 (148)
326 TIGR02201 heptsyl_trn_III lipo 39.8 1.6E+02 0.0036 28.6 8.8 28 120-149 260-287 (344)
327 PF06418 CTP_synth_N: CTP synt 39.7 35 0.00076 31.8 3.6 42 9-50 1-45 (276)
328 PRK13235 nifH nitrogenase redu 39.6 48 0.001 31.2 4.8 38 8-45 1-38 (274)
329 PLN02939 transferase, transfer 39.5 55 0.0012 36.6 5.6 43 5-47 478-526 (977)
330 PF03808 Glyco_tran_WecB: Glyc 39.4 2.5E+02 0.0055 24.2 9.0 96 25-153 37-137 (172)
331 COG0504 PyrG CTP synthase (UTP 39.4 53 0.0012 33.4 5.0 42 9-50 1-45 (533)
332 PRK10964 ADP-heptose:LPS hepto 39.0 1.2E+02 0.0025 29.3 7.5 28 120-149 253-280 (322)
333 TIGR00514 accC acetyl-CoA carb 38.2 2.6E+02 0.0056 28.5 10.2 35 8-47 2-36 (449)
334 cd01715 ETF_alpha The electron 37.9 2.6E+02 0.0056 24.0 9.9 30 120-149 83-115 (168)
335 COG2109 BtuR ATP:corrinoid ade 37.9 2.9E+02 0.0063 24.5 10.5 97 11-131 31-133 (198)
336 PRK03359 putative electron tra 37.7 72 0.0016 29.8 5.4 30 120-149 112-147 (256)
337 KOG0202 Ca2+ transporting ATPa 37.5 4.8E+02 0.011 28.9 11.8 153 283-468 572-748 (972)
338 PRK08760 replicative DNA helic 37.5 3E+02 0.0065 28.4 10.4 41 11-51 232-273 (476)
339 TIGR01918 various_sel_PB selen 37.2 74 0.0016 31.9 5.5 39 104-147 65-113 (431)
340 TIGR01917 gly_red_sel_B glycin 37.1 73 0.0016 31.9 5.5 40 103-147 64-113 (431)
341 COG0503 Apt Adenine/guanine ph 36.9 88 0.0019 27.4 5.6 37 109-147 44-82 (179)
342 COG1066 Sms Predicted ATP-depe 36.6 76 0.0016 31.8 5.5 41 10-51 95-135 (456)
343 PF05225 HTH_psq: helix-turn-h 36.5 69 0.0015 20.8 3.7 26 415-442 1-26 (45)
344 TIGR01969 minD_arch cell divis 36.5 3.3E+02 0.0072 24.7 12.0 36 11-46 3-39 (251)
345 PRK09739 hypothetical protein; 36.3 85 0.0018 27.9 5.6 37 7-43 2-41 (199)
346 PRK09620 hypothetical protein; 36.3 51 0.0011 30.3 4.1 21 26-46 33-53 (229)
347 TIGR01380 glut_syn glutathione 36.2 53 0.0011 31.7 4.5 42 9-50 1-45 (312)
348 PRK13232 nifH nitrogenase redu 36.1 56 0.0012 30.7 4.6 39 8-46 1-39 (273)
349 PRK13982 bifunctional SbtC-lik 36.1 46 0.00099 34.2 4.1 41 7-47 255-307 (475)
350 PRK02155 ppnK NAD(+)/NADH kina 35.5 64 0.0014 30.9 4.8 62 349-430 55-120 (291)
351 PRK13604 luxD acyl transferase 35.3 74 0.0016 30.6 5.2 36 7-42 35-70 (307)
352 PLN02695 GDP-D-mannose-3',5'-e 35.2 73 0.0016 31.6 5.5 37 4-44 17-53 (370)
353 PRK05380 pyrG CTP synthetase; 35.2 61 0.0013 33.7 4.9 43 8-50 1-46 (533)
354 PF00318 Ribosomal_S2: Ribosom 35.2 1.2E+02 0.0026 27.4 6.4 34 119-152 142-177 (211)
355 PRK14077 pnk inorganic polypho 35.1 53 0.0011 31.3 4.2 57 354-430 61-121 (287)
356 PRK13982 bifunctional SbtC-lik 35.1 57 0.0012 33.5 4.6 43 8-51 70-112 (475)
357 TIGR02699 archaeo_AfpA archaeo 34.3 59 0.0013 28.4 4.0 32 20-51 10-43 (174)
358 cd03466 Nitrogenase_NifN_2 Nit 34.2 2.2E+02 0.0047 28.9 8.8 25 120-147 372-396 (429)
359 PF03308 ArgK: ArgK protein; 34.1 1.1E+02 0.0024 28.6 5.9 115 9-147 30-150 (266)
360 COG0801 FolK 7,8-dihydro-6-hyd 34.1 85 0.0018 27.0 4.8 33 284-316 3-35 (160)
361 TIGR00725 conserved hypothetic 34.0 63 0.0014 27.7 4.1 34 8-41 1-36 (159)
362 PF08433 KTI12: Chromatin asso 34.0 3.1E+02 0.0068 25.8 9.2 103 10-155 3-111 (270)
363 PRK13236 nitrogenase reductase 33.7 77 0.0017 30.3 5.2 41 6-46 4-44 (296)
364 cd01141 TroA_d Periplasmic bin 33.7 65 0.0014 28.1 4.4 29 120-148 69-99 (186)
365 PF06506 PrpR_N: Propionate ca 33.6 59 0.0013 28.4 4.0 44 104-152 111-154 (176)
366 PLN00198 anthocyanidin reducta 33.5 69 0.0015 31.1 4.9 42 1-45 1-42 (338)
367 cd01968 Nitrogenase_NifE_I Nit 33.4 2.7E+02 0.0059 28.0 9.3 25 120-147 356-380 (410)
368 PLN02735 carbamoyl-phosphate s 33.4 2.8E+02 0.0062 32.1 10.3 41 7-47 22-68 (1102)
369 PLN03064 alpha,alpha-trehalose 33.4 4.1E+02 0.0089 30.1 11.1 106 347-471 446-563 (934)
370 COG2084 MmsB 3-hydroxyisobutyr 33.3 58 0.0013 31.0 4.1 35 9-48 1-35 (286)
371 TIGR00877 purD phosphoribosyla 33.2 2.6E+02 0.0057 28.1 9.2 37 9-50 1-37 (423)
372 PRK09165 replicative DNA helic 33.1 3E+02 0.0066 28.6 9.7 41 11-51 220-275 (497)
373 PLN02929 NADH kinase 32.6 41 0.00089 32.2 3.0 66 357-430 64-138 (301)
374 PF08323 Glyco_transf_5: Starc 32.3 37 0.0008 31.5 2.6 23 24-46 21-43 (245)
375 PRK08840 replicative DNA helic 32.2 2.7E+02 0.0059 28.6 9.1 41 11-51 220-261 (464)
376 PRK05114 hypothetical protein; 32.1 1.3E+02 0.0027 20.8 4.3 35 434-472 12-46 (59)
377 PF04244 DPRP: Deoxyribodipyri 32.1 49 0.0011 30.3 3.3 25 21-45 47-71 (224)
378 cd07039 TPP_PYR_POX Pyrimidine 32.0 1.7E+02 0.0036 25.2 6.5 27 360-386 64-96 (164)
379 PF01695 IstB_IS21: IstB-like 31.9 66 0.0014 28.1 4.0 45 7-51 46-90 (178)
380 KOG0832 Mitochondrial/chloropl 31.9 26 0.00057 31.7 1.4 34 18-51 90-123 (251)
381 PF03701 UPF0181: Uncharacteri 31.9 1.5E+02 0.0032 19.9 4.5 34 434-471 12-45 (51)
382 KOG3339 Predicted glycosyltran 31.8 2.5E+02 0.0055 24.7 7.2 24 12-35 41-64 (211)
383 PF07991 IlvN: Acetohydroxy ac 31.5 61 0.0013 27.9 3.5 35 8-47 4-38 (165)
384 PRK11780 isoprenoid biosynthes 31.5 1E+02 0.0023 27.9 5.4 39 8-46 1-43 (217)
385 PF12732 YtxH: YtxH-like prote 31.5 2E+02 0.0044 20.8 6.4 52 415-477 23-74 (74)
386 cd02065 B12-binding_like B12 b 31.4 92 0.002 24.9 4.6 41 11-51 2-42 (125)
387 PF07905 PucR: Purine cataboli 31.4 2.4E+02 0.0051 22.8 7.0 44 270-317 34-78 (123)
388 TIGR00959 ffh signal recogniti 31.3 3.9E+02 0.0084 27.2 9.8 43 8-50 99-142 (428)
389 PRK05636 replicative DNA helic 31.2 1.7E+02 0.0037 30.5 7.4 41 11-51 268-309 (505)
390 PF08785 Ku_PK_bind: Ku C term 31.2 2.2E+02 0.0047 23.1 6.6 56 415-473 23-79 (120)
391 PF06506 PrpR_N: Propionate ca 31.1 44 0.00096 29.1 2.8 32 356-388 31-62 (176)
392 PF01075 Glyco_transf_9: Glyco 31.1 51 0.0011 30.2 3.4 98 281-385 104-208 (247)
393 cd02034 CooC The accessory pro 31.0 1.1E+02 0.0023 24.6 4.8 37 10-46 1-37 (116)
394 TIGR01005 eps_transp_fam exopo 30.8 2.6E+02 0.0057 30.8 9.3 40 8-47 545-586 (754)
395 PRK05632 phosphate acetyltrans 30.7 5.7E+02 0.012 27.8 11.7 34 10-43 4-38 (684)
396 COG0716 FldA Flavodoxins [Ener 30.7 97 0.0021 26.1 4.8 43 8-50 1-44 (151)
397 PF02702 KdpD: Osmosensitive K 30.7 79 0.0017 28.3 4.2 41 6-46 3-43 (211)
398 PF02572 CobA_CobO_BtuR: ATP:c 30.6 3.1E+02 0.0067 23.9 7.8 97 10-130 5-106 (172)
399 cd01017 AdcA Metal binding pro 30.6 3.4E+02 0.0074 25.6 9.0 42 106-149 208-251 (282)
400 PLN00016 RNA-binding protein; 30.4 60 0.0013 32.2 4.0 38 7-46 51-90 (378)
401 PRK06703 flavodoxin; Provision 30.4 88 0.0019 26.3 4.5 38 8-45 1-39 (151)
402 TIGR01007 eps_fam capsular exo 30.4 1.2E+02 0.0025 27.0 5.5 39 8-46 17-56 (204)
403 COG0059 IlvC Ketol-acid reduct 30.1 63 0.0014 30.9 3.6 40 7-51 17-56 (338)
404 PF12695 Abhydrolase_5: Alpha/ 30.0 94 0.002 25.2 4.6 35 11-45 1-35 (145)
405 PRK03372 ppnK inorganic polyph 30.0 78 0.0017 30.5 4.4 57 354-430 69-129 (306)
406 COG3349 Uncharacterized conser 30.0 56 0.0012 33.5 3.6 34 9-47 1-34 (485)
407 COG2099 CobK Precorrin-6x redu 29.8 1.4E+02 0.003 27.7 5.7 100 27-147 119-228 (257)
408 TIGR01162 purE phosphoribosyla 29.8 1.8E+02 0.004 24.8 6.1 122 291-447 33-156 (156)
409 TIGR00460 fmt methionyl-tRNA f 29.7 71 0.0015 30.9 4.2 33 9-46 1-33 (313)
410 PRK01911 ppnK inorganic polyph 29.4 87 0.0019 30.0 4.6 58 353-430 60-121 (292)
411 CHL00194 ycf39 Ycf39; Provisio 29.4 83 0.0018 30.2 4.7 33 9-45 1-33 (317)
412 COG2159 Predicted metal-depend 29.3 1.5E+02 0.0031 28.4 6.2 93 270-375 116-210 (293)
413 PRK11064 wecC UDP-N-acetyl-D-m 29.3 75 0.0016 32.1 4.4 33 8-45 3-35 (415)
414 TIGR00732 dprA DNA protecting 29.2 3.7E+02 0.008 24.4 8.5 51 354-405 151-208 (220)
415 cd01018 ZntC Metal binding pro 29.2 4.8E+02 0.01 24.4 10.4 44 106-151 205-250 (266)
416 PF14626 RNase_Zc3h12a_2: Zc3h 29.2 66 0.0014 25.9 3.1 30 22-51 9-38 (122)
417 PF01372 Melittin: Melittin; 29.1 9.1 0.0002 21.1 -1.2 17 368-384 1-17 (26)
418 TIGR00750 lao LAO/AO transport 28.8 3.4E+02 0.0073 25.9 8.7 43 7-49 33-75 (300)
419 COG0771 MurD UDP-N-acetylmuram 28.8 93 0.002 31.7 4.9 36 8-48 7-42 (448)
420 PF06180 CbiK: Cobalt chelatas 28.5 91 0.002 29.3 4.5 39 283-321 2-43 (262)
421 PRK06719 precorrin-2 dehydroge 28.4 1E+02 0.0022 26.4 4.5 33 8-45 13-45 (157)
422 TIGR01012 Sa_S2_E_A ribosomal 28.4 77 0.0017 28.3 3.8 32 120-151 108-141 (196)
423 PRK13869 plasmid-partitioning 28.4 95 0.0021 31.3 5.0 40 8-47 121-161 (405)
424 PLN02327 CTP synthase 28.1 85 0.0018 32.8 4.5 42 9-50 1-45 (557)
425 cd03114 ArgK-like The function 27.8 3.6E+02 0.0079 22.6 9.0 36 11-46 2-37 (148)
426 COG0569 TrkA K+ transport syst 27.8 75 0.0016 29.0 3.8 35 9-48 1-35 (225)
427 TIGR02193 heptsyl_trn_I lipopo 27.8 2E+02 0.0043 27.6 7.0 28 120-149 254-281 (319)
428 TIGR01182 eda Entner-Doudoroff 27.7 4.5E+02 0.0098 23.6 9.4 28 120-147 80-107 (204)
429 TIGR03026 NDP-sugDHase nucleot 27.4 82 0.0018 31.8 4.3 33 9-46 1-33 (411)
430 PF00289 CPSase_L_chain: Carba 27.3 2E+02 0.0044 22.8 5.7 70 296-376 10-89 (110)
431 PLN02240 UDP-glucose 4-epimera 27.2 1E+02 0.0022 30.0 4.9 34 7-44 4-37 (352)
432 PF13450 NAD_binding_8: NAD(P) 27.2 76 0.0016 22.6 3.0 22 26-47 9-30 (68)
433 PRK10818 cell division inhibit 27.1 1E+02 0.0022 28.8 4.7 39 8-46 1-41 (270)
434 PRK07004 replicative DNA helic 27.1 4E+02 0.0087 27.3 9.3 41 11-51 216-257 (460)
435 COG1435 Tdk Thymidine kinase [ 27.0 4.6E+02 0.01 23.5 10.5 43 7-49 2-45 (201)
436 COG0151 PurD Phosphoribosylami 27.0 2.2E+02 0.0048 28.6 6.9 35 9-48 1-35 (428)
437 KOG0081 GTPase Rab27, small G 27.0 1.6E+02 0.0034 25.2 5.1 33 119-151 123-165 (219)
438 PRK13849 putative crown gall t 26.9 1.1E+02 0.0023 28.1 4.7 42 8-49 1-43 (231)
439 COG1440 CelA Phosphotransferas 26.9 1.4E+02 0.003 23.4 4.4 34 8-41 1-34 (102)
440 COG2210 Peroxiredoxin family p 26.9 1.4E+02 0.0031 24.8 4.8 40 12-51 7-46 (137)
441 PRK08125 bifunctional UDP-gluc 26.9 3.1E+02 0.0067 29.7 8.9 33 9-46 1-34 (660)
442 PRK12815 carB carbamoyl phosph 26.9 5.1E+02 0.011 30.0 10.9 41 7-47 554-600 (1068)
443 TIGR01369 CPSaseII_lrg carbamo 26.8 4.8E+02 0.01 30.1 10.7 40 7-46 553-598 (1050)
444 PRK13185 chlL protochlorophyll 26.8 1.1E+02 0.0023 28.7 4.8 37 10-46 4-40 (270)
445 TIGR03880 KaiC_arch_3 KaiC dom 26.8 2.4E+02 0.0051 25.4 7.0 43 9-51 17-59 (224)
446 PRK02231 ppnK inorganic polyph 26.8 74 0.0016 30.1 3.6 58 352-429 37-98 (272)
447 cd06533 Glyco_transf_WecG_TagA 26.5 4.2E+02 0.0091 22.8 10.1 88 220-321 46-134 (171)
448 PRK05246 glutathione synthetas 26.5 93 0.002 30.1 4.4 42 8-49 1-45 (316)
449 cd06320 PBP1_allose_binding Pe 26.5 5E+02 0.011 23.7 9.6 28 120-147 57-88 (275)
450 PRK15461 NADH-dependent gamma- 26.3 79 0.0017 30.2 3.8 32 8-44 1-32 (296)
451 PRK02649 ppnK inorganic polyph 26.1 96 0.0021 29.9 4.3 57 354-430 65-125 (305)
452 PRK14620 NAD(P)H-dependent gly 26.0 84 0.0018 30.4 4.0 33 9-46 1-33 (326)
453 PF03720 UDPG_MGDP_dh_C: UDP-g 26.0 80 0.0017 24.8 3.2 34 18-51 10-45 (106)
454 PRK09590 celB cellobiose phosp 26.0 1.3E+02 0.0029 23.7 4.3 34 8-41 1-34 (104)
455 PRK11823 DNA repair protein Ra 25.9 4E+02 0.0087 27.2 9.0 42 10-51 82-123 (446)
456 PF00448 SRP54: SRP54-type pro 25.8 1.1E+02 0.0024 27.2 4.5 40 9-48 2-41 (196)
457 PRK14477 bifunctional nitrogen 25.8 4.1E+02 0.009 30.1 9.8 27 120-149 389-415 (917)
458 PF00070 Pyr_redox: Pyridine n 25.7 97 0.0021 22.6 3.5 24 24-47 10-33 (80)
459 COG0163 UbiX 3-polyprenyl-4-hy 25.7 1.4E+02 0.0031 26.2 4.8 43 8-51 2-44 (191)
460 TIGR01915 npdG NADPH-dependent 25.7 83 0.0018 28.5 3.7 32 9-45 1-33 (219)
461 PRK06835 DNA replication prote 25.6 91 0.002 30.4 4.1 43 9-51 184-226 (329)
462 PF02056 Glyco_hydro_4: Family 25.6 4.7E+02 0.01 23.1 11.5 114 20-155 39-174 (183)
463 TIGR03845 sulfopyru_alph sulfo 25.5 99 0.0021 26.4 3.9 26 362-387 62-92 (157)
464 TIGR00288 conserved hypothetic 25.5 1.6E+02 0.0034 25.4 5.0 27 17-46 113-139 (160)
465 COG1927 Mtd Coenzyme F420-depe 25.5 5E+02 0.011 23.4 9.5 89 8-151 2-97 (277)
466 PLN02496 probable phosphopanto 25.4 96 0.0021 28.0 3.9 44 6-51 17-60 (209)
467 PRK13195 pyrrolidone-carboxyla 25.4 77 0.0017 28.9 3.3 27 8-34 1-29 (222)
468 PLN00141 Tic62-NAD(P)-related 25.2 1.5E+02 0.0033 27.2 5.5 37 5-45 14-50 (251)
469 PF02776 TPP_enzyme_N: Thiamin 25.1 75 0.0016 27.5 3.2 27 362-388 67-99 (172)
470 PRK08322 acetolactate synthase 25.1 1.4E+02 0.003 31.4 5.7 28 359-386 63-96 (547)
471 PF00862 Sucrose_synth: Sucros 25.0 1.2E+02 0.0026 31.3 4.8 28 120-147 401-430 (550)
472 PRK00170 azoreductase; Reviewe 25.0 1.4E+02 0.003 26.4 5.0 37 8-44 1-43 (201)
473 PRK06129 3-hydroxyacyl-CoA deh 25.0 84 0.0018 30.2 3.8 34 8-46 2-35 (308)
474 TIGR02655 circ_KaiC circadian 24.9 1.7E+02 0.0038 30.2 6.3 43 9-51 264-306 (484)
475 cd01121 Sms Sms (bacterial rad 24.5 1.2E+02 0.0027 30.1 4.9 42 10-51 84-125 (372)
476 CHL00076 chlB photochlorophyll 24.5 1.2E+02 0.0025 31.8 4.9 26 120-148 374-399 (513)
477 PRK08155 acetolactate synthase 24.4 1.1E+02 0.0023 32.5 4.7 82 298-386 14-109 (564)
478 TIGR00064 ftsY signal recognit 24.3 1.7E+02 0.0038 27.5 5.7 40 8-47 72-111 (272)
479 cd01976 Nitrogenase_MoFe_alpha 24.3 97 0.0021 31.4 4.2 25 120-147 369-393 (421)
480 PRK09701 D-allose transporter 24.3 6.2E+02 0.013 24.0 10.3 28 120-147 82-113 (311)
481 PF00148 Oxidored_nitro: Nitro 24.2 5.4E+02 0.012 25.6 9.6 33 107-147 333-365 (398)
482 PF13460 NAD_binding_10: NADH( 24.1 1E+02 0.0023 26.5 4.0 31 16-48 4-34 (183)
483 cd07038 TPP_PYR_PDC_IPDC_like 24.0 1E+02 0.0022 26.4 3.8 28 360-387 60-93 (162)
484 PLN02293 adenine phosphoribosy 24.0 2.6E+02 0.0057 24.7 6.4 28 120-147 62-91 (187)
485 PF03721 UDPG_MGDP_dh_N: UDP-g 24.0 1.2E+02 0.0026 26.7 4.3 34 9-47 1-34 (185)
486 PF02635 DrsE: DsrE/DsrF-like 23.9 2.6E+02 0.0057 21.8 6.1 43 9-51 1-49 (122)
487 PRK02910 light-independent pro 23.9 1.2E+02 0.0026 31.7 4.9 26 120-148 362-387 (519)
488 PRK03708 ppnK inorganic polyph 23.9 97 0.0021 29.4 3.9 54 357-430 57-113 (277)
489 PTZ00119 40S ribosomal protein 23.8 2.6E+02 0.0057 26.2 6.3 57 413-469 81-140 (302)
490 PF05368 NmrA: NmrA-like famil 23.8 4.4E+02 0.0094 23.7 8.2 33 17-51 5-37 (233)
491 PF00142 Fer4_NifH: 4Fe-4S iro 23.7 1.3E+02 0.0027 28.3 4.4 43 9-51 1-43 (273)
492 cd03113 CTGs CTP synthetase (C 23.7 1.4E+02 0.0029 27.8 4.5 41 10-50 1-44 (255)
493 PRK09219 xanthine phosphoribos 23.6 2E+02 0.0043 25.5 5.6 28 120-147 50-79 (189)
494 TIGR01278 DPOR_BchB light-inde 23.6 1.2E+02 0.0025 31.8 4.7 26 120-148 364-389 (511)
495 COG2327 WcaK Polysaccharide py 23.6 2.3E+02 0.005 28.2 6.4 70 352-429 280-350 (385)
496 COG0223 Fmt Methionyl-tRNA for 23.6 1.1E+02 0.0024 29.4 4.2 37 8-49 1-37 (307)
497 PF01081 Aldolase: KDPG and KH 23.5 5.3E+02 0.012 23.0 10.1 33 120-152 80-112 (196)
498 COG0132 BioD Dethiobiotin synt 23.5 1.3E+02 0.0028 27.5 4.3 35 8-42 1-37 (223)
499 PRK04539 ppnK inorganic polyph 23.4 1.4E+02 0.0031 28.6 4.9 61 350-430 61-125 (296)
500 COG0143 MetG Methionyl-tRNA sy 23.3 1.4E+02 0.0031 31.3 5.2 40 8-47 4-53 (558)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-66 Score=523.24 Aligned_cols=463 Identities=30% Similarity=0.547 Sum_probs=361.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhc-cCCCCCCccccccc-cCC-CCCeEEEecCC
Q 011789 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMT-KASPEMGSDIFAGV-RKS-GLDIRYMTLSD 80 (477)
Q Consensus 4 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~-~~~~~~~~l~~ 80 (477)
+.+...||+++|+|++||++|++.||+.|+.+|..|||++++.+...+. ... +..+. ... ...++|..+|+
T Consensus 3 ~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~------~~~~~~~~~~~~~i~~~~~pd 76 (480)
T PLN02555 3 SESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANK------IQDGVLKPVGDGFIRFEFFED 76 (480)
T ss_pred CCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhcccc------ccccccccCCCCeEEEeeCCC
Confidence 3455579999999999999999999999999999999999998776552 100 00000 000 11477777888
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhh
Q 011789 81 GLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYH 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~ 160 (477)
+++.+.+...++..++..+.....+.+++++..+..+...+++||+|.++.|+..+|+++|||++.+++++++.+..+.+
T Consensus 77 glp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~ 156 (480)
T PLN02555 77 GWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYH 156 (480)
T ss_pred CCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHH
Confidence 87765333334555666665567778888887764322234999999999999999999999999999999999888777
Q ss_pred hhhhhhcCCcCCCCCC-CCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHH
Q 011789 161 LDLLTINGHFQCYDCR-EDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTA 239 (477)
Q Consensus 161 ~~~~~~~~~~p~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 239 (477)
+. .+..+..... ++....+|+++.++.++++.++........+.+.+.+..+...+++.+++||+.+||+..+..
T Consensus 157 ~~----~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 232 (480)
T PLN02555 157 YY----HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDY 232 (480)
T ss_pred Hh----hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 63 2322322211 112235888887788888776643222334445555555666788899999999999999988
Q ss_pred HHccCCEEEeCccCCCCCCc-cccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEE
Q 011789 240 LKAKIPFITMGPISLNKFSD-RVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWI 317 (477)
Q Consensus 240 ~~~~~p~~~vGp~~~~~~~~-~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 317 (477)
++...|++.|||+....... ...+...|.. +++.+||++++++++|||||||+...+.+++.+++.+++..+.+|||+
T Consensus 233 l~~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~ 312 (480)
T PLN02555 233 MSKLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWV 312 (480)
T ss_pred HhhCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 87644589999997532110 1001122333 789999999988899999999999899999999999999999999999
Q ss_pred EcCCCCC-CCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHH
Q 011789 318 LRPDIVS-SDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRK 396 (477)
Q Consensus 318 ~~~~~~~-~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 396 (477)
++..... ..+...+|++|.++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~ 392 (480)
T PLN02555 313 MRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAV 392 (480)
T ss_pred EecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHH
Confidence 8743110 012245899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeecC---CC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh
Q 011789 397 LAVDDWNVGLNLSN---EK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQ 472 (477)
Q Consensus 397 ~v~~~~G~G~~~~~---~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 472 (477)
++++.||+|+.+.. ++ .++.++|.++|+++|++++|+++|+||++++++.++++++||||.+++++||++++++-+
T Consensus 393 ~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~~ 472 (480)
T PLN02555 393 YLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKSV 472 (480)
T ss_pred HHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 99999999999931 12 579999999999999988888999999999999999999999999999999999998866
Q ss_pred hhcc
Q 011789 473 SKCD 476 (477)
Q Consensus 473 ~~~~ 476 (477)
.+.|
T Consensus 473 ~~~~ 476 (480)
T PLN02555 473 EIVD 476 (480)
T ss_pred eecc
Confidence 6554
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-66 Score=519.41 Aligned_cols=439 Identities=30% Similarity=0.556 Sum_probs=346.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCC
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPL 84 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (477)
..+..||+++|++++||++|++.||+.|+.||+.|||++++.+........ .++++..+|++++.
T Consensus 4 ~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~---------------~~i~~~~ip~glp~ 68 (451)
T PLN02410 4 KPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDF---------------TDFQFVTIPESLPE 68 (451)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCC---------------CCeEEEeCCCCCCc
Confidence 356789999999999999999999999999999999999997642111100 16899999988876
Q ss_pred C-CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHh-cCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhh
Q 011789 85 G-FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVR-SGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLD 162 (477)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~ 162 (477)
+ .+. .....++..+...+...+.+++..+.. +..++++||+|.+..|+..+|+++|||++.+++++++.+..+.++.
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 69 SDFKN-LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred ccccc-cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 4 222 233456666656667778888777542 2235799999999999999999999999999999999887766554
Q ss_pred hhhhcCC-cCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHH
Q 011789 163 LLTINGH-FQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALK 241 (477)
Q Consensus 163 ~~~~~~~-~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 241 (477)
.....+. .|......+....+|++++++.+++...... ....+...+... ....+++.+++||+++||+..++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 148 KLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred HHHhccCCCCccccccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHH
Confidence 3322211 2322111112235788777666665543321 112222333222 23467889999999999999999988
Q ss_pred ccC-C-EEEeCccCCCCCCccccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEE
Q 011789 242 AKI-P-FITMGPISLNKFSDRVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWIL 318 (477)
Q Consensus 242 ~~~-p-~~~vGp~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 318 (477)
... + +++|||+........ ..+++ +++.+|||+++++++|||||||....+.+++.+++.+|+..+.+|+|++
T Consensus 225 ~~~~~~v~~vGpl~~~~~~~~----~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~ 300 (451)
T PLN02410 225 QQLQIPVYPIGPLHLVASAPT----SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVI 300 (451)
T ss_pred hccCCCEEEecccccccCCCc----cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 754 4 999999975432111 12333 5688999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCCC-CCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHH
Q 011789 319 RPDIVSSDD-PNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKL 397 (477)
Q Consensus 319 ~~~~~~~~~-~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 397 (477)
+.+.....+ ...+|++|+++.++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||++
T Consensus 301 r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 380 (451)
T PLN02410 301 RPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARY 380 (451)
T ss_pred ccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHH
Confidence 843210111 1348999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 011789 398 AVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 398 v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
+++.||+|+.+ + .++.++|+++|+++|.|++|++|+++|++++++++++..+||||..++++||+.++.
T Consensus 381 ~~~~~~~G~~~---~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 381 LECVWKIGIQV---EGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHhCeeEEe---CCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99988999999 5 899999999999999988788999999999999999999999999999999999864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.1e-65 Score=506.81 Aligned_cols=430 Identities=30% Similarity=0.580 Sum_probs=343.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCC
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLP 83 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (477)
...+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+ .... +++++..+|++++
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~---------------~~i~~~~ipdglp 66 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPS---------------SPISIATISDGYD 66 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCC---------------CCEEEEEcCCCCC
Confidence 34557999999999999999999999999999999999999876554 2211 2699999999888
Q ss_pred CC-CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCc-cEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhh
Q 011789 84 LG-FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENV-HCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHL 161 (477)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p-D~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~ 161 (477)
.+ .+...++..++..+...+.+.+++++..+..+ .+| ++||+|.+..|+..+|+++|||++.+++++++.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~ 145 (449)
T PLN02173 67 QGGFSSAGSVPEYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS 145 (449)
T ss_pred CcccccccCHHHHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH
Confidence 63 33344566677777667788888888776432 245 9999999999999999999999999999988877554421
Q ss_pred hhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHH
Q 011789 162 DLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALK 241 (477)
Q Consensus 162 ~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 241 (477)
. .... .....+|+++.++.++++.++..........+.+.+..+...+++.+++||+++||+..++..+
T Consensus 146 ~--~~~~---------~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 146 Y--INNG---------SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred H--hccC---------CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 1 1111 0112367777777777777664333333344445455566778899999999999999998886
Q ss_pred ccCCEEEeCccCCCC---CC--ccc-cccccC--Cc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 011789 242 AKIPFITMGPISLNK---FS--DRV-VATSLW--SE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKV 312 (477)
Q Consensus 242 ~~~p~~~vGp~~~~~---~~--~~~-~~~~~~--~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~ 312 (477)
...|++.|||+.+.. .. ... .+...| .+ +++.+||+.++++++|||||||+...+.+++.+++.+| .+.
T Consensus 215 ~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 215 KVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred hcCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 643499999997421 00 000 001223 22 56999999998899999999999989999999999999 677
Q ss_pred eEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccch
Q 011789 313 TFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQ 391 (477)
Q Consensus 313 ~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ 391 (477)
+|+|++.... ...+|++|+++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 293 ~flWvvr~~~-----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 293 SYLWVVRASE-----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred CEEEEEeccc-----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 8999997531 235888998887 5889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeecCCC---CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 392 FTNRKLAVDDWNVGLNLSNEK---VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 392 ~~na~~v~~~~G~G~~~~~~~---~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
+.||+++++.||+|+.+..++ .++.++|+++++++|+|++|+++|+||++++++.+++..+||||.+++++|+++++
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999999999889999884322 25899999999999999888899999999999999999999999999999999885
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-64 Score=508.20 Aligned_cols=434 Identities=25% Similarity=0.515 Sum_probs=340.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCC
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF 86 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (477)
.+.||+++|++++||++|++.||+.|+.+|+.||+++++.+...+..... . .++++++.+|++.+.+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----------~-~~~i~~v~lp~g~~~~~ 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----------P-KLGITFMSISDGQDDDP 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----------C-CCCEEEEECCCCCCCCc
Confidence 34599999999999999999999999999999999999998766522110 0 12699999998765321
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhhhh
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTI 166 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~ 166 (477)
..++..++..+...+.+.+.++++++... ..+++||+|.+..|+..+|+++|||++.+|++++..+..+.+++....
T Consensus 73 --~~~~~~l~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~ 149 (448)
T PLN02562 73 --PRDFFSIENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVR 149 (448)
T ss_pred --cccHHHHHHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhh
Confidence 22344455555445677788888776432 235899999999999999999999999999999988877766554333
Q ss_pred cCCcCCCCCC--CCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHH---
Q 011789 167 NGHFQCYDCR--EDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALK--- 241 (477)
Q Consensus 167 ~~~~p~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~--- 241 (477)
.+..+..... ......+|+++.++.+++..++..........+.+.+..+...+++.+++||+.+||+..+...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 229 (448)
T PLN02562 150 TGLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY 229 (448)
T ss_pred ccccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh
Confidence 3222211101 11123578887777777776554322222334555555566677889999999999998777554
Q ss_pred --ccCC-EEEeCccCCCCCCccccccccCCc-cccchhhccCCCCcEEEEEecccc-cCCHHHHHHHHHHHHhCCCeEEE
Q 011789 242 --AKIP-FITMGPISLNKFSDRVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYA-HVSKRDLIEIANGIAKSKVTFIW 316 (477)
Q Consensus 242 --~~~p-~~~vGp~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~ 316 (477)
+..| ++.|||+......... ....|.+ .++.+||++++++++|||||||+. ..+.+++++++.+|+..+.+|||
T Consensus 230 ~~~~~~~v~~iGpl~~~~~~~~~-~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW 308 (448)
T PLN02562 230 NNGQNPQILQIGPLHNQEATTIT-KPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIW 308 (448)
T ss_pred ccccCCCEEEecCcccccccccC-CCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEE
Confidence 3457 9999999865321000 0011222 567899999988899999999986 67889999999999999999999
Q ss_pred EEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHH
Q 011789 317 ILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRK 396 (477)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 396 (477)
++.... ...+|++|+++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 309 ~~~~~~-----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 383 (448)
T PLN02562 309 VLNPVW-----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCA 383 (448)
T ss_pred EEcCCc-----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHH
Confidence 997532 135889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 397 LAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 397 ~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
++++.||+|+.+ ++++.++|.++|+++|+|+ +|++||+++++++.++ .+||||.+++++||++++
T Consensus 384 ~~~~~~g~g~~~---~~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 384 YIVDVWKIGVRI---SGFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHhCceeEe---CCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 998766999998 5789999999999999998 9999999999999887 668999999999999873
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.2e-64 Score=506.02 Aligned_cols=439 Identities=26% Similarity=0.503 Sum_probs=339.1
Q ss_pred CCCCCCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEe
Q 011789 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALK--LASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMT 77 (477)
Q Consensus 1 ~~~~~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (477)
|+.+.....||+|+|+|++||++|++.||++ |++||+.|||++++.+.+.+ ..+. . ...+++..
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~------------~-~~~~~~~~ 67 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK------------P-RRPVDLVF 67 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC------------C-CCceEEEE
Confidence 7777777889999999999999999999999 56999999999999987665 2211 0 11578888
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHH
Q 011789 78 LSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTL 157 (477)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~ 157 (477)
+|++++.+.. .+...++..+.+.+.+.+.+++... +||+||+|.++.|+..+|+++|||.+.+|++++..+..
T Consensus 68 ~~~glp~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~ 140 (456)
T PLN02210 68 FSDGLPKDDP--RAPETLLKSLNKVGAKNLSKIIEEK-----RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSV 140 (456)
T ss_pred CCCCCCCCcc--cCHHHHHHHHHHhhhHHHHHHHhcC-----CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHH
Confidence 8887776532 2444566656555555666665543 79999999999999999999999999999999988877
Q ss_pred HhhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHH
Q 011789 158 YYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAV 237 (477)
Q Consensus 158 ~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 237 (477)
+.++... ....+... .......+|+++.++.+++...+..... ..+...+.+..+....++.+++|++.+||+..+
T Consensus 141 ~~~~~~~--~~~~~~~~-~~~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 216 (456)
T PLN02210 141 YYRYYMK--TNSFPDLE-DLNQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEII 216 (456)
T ss_pred HHhhhhc--cCCCCccc-ccCCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHH
Confidence 6655321 11111110 1112235777776676776655543211 112222223333456778999999999999999
Q ss_pred HHHHccCCEEEeCccCCC----CCCc---cccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 238 TALKAKIPFITMGPISLN----KFSD---RVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 238 ~~~~~~~p~~~vGp~~~~----~~~~---~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
..++...|+++|||+... .... ......+|.+ +++.+||+.++++++|||||||....+.+++++++.+|+.
T Consensus 217 ~~l~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~ 296 (456)
T PLN02210 217 ESMADLKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKN 296 (456)
T ss_pred HHHhhcCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 888774239999999742 1110 0000123444 6789999999888999999999988899999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 310 SKVTFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+.+|||+++.... ...+++|+++. +++..+.+|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 297 ~~~~flw~~~~~~~-----~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 297 RGVPFLWVIRPKEK-----AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred CCCCEEEEEeCCcc-----ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99999999975311 12345677766 3788888999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcceeeecCC--C-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 011789 389 TDQFTNRKLAVDDWNVGLNLSNE--K-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIK 465 (477)
Q Consensus 389 ~DQ~~na~~v~~~~G~G~~~~~~--~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 465 (477)
+||+.||+++++.||+|+.+..+ + .++.++|+++|+++|+|++|++||+||+++++..+++.++||||.+++++|++
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~ 451 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFIS 451 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999844999998421 1 58999999999999999878889999999999999999999999999999999
Q ss_pred HHH
Q 011789 466 DLK 468 (477)
Q Consensus 466 ~~~ 468 (477)
+++
T Consensus 452 ~~~ 454 (456)
T PLN02210 452 DIT 454 (456)
T ss_pred HHh
Confidence 885
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.4e-64 Score=504.02 Aligned_cols=447 Identities=27% Similarity=0.402 Sum_probs=334.3
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecC----C
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLS----D 80 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~----~ 80 (477)
.+++.||+++|++++||++||+.||+.|+.+|+.|||++++.+...+..... . .+++++..+| +
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----------~-~~~i~~~~lp~P~~~ 73 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----------K-HPSIETLVLPFPSHP 73 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----------c-CCCeeEEeCCCCCcC
Confidence 3678999999999999999999999999999999999999998876622110 0 1146666544 2
Q ss_pred CCCCCCCCCCc----HHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHH
Q 011789 81 GLPLGFDRSLN----HEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFT 156 (477)
Q Consensus 81 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~ 156 (477)
+++.+.+...+ ....+........+.+.+++... ..+|++||+|.+..|+..+|+++|||++.+|+++++.+.
T Consensus 74 ~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~ 150 (477)
T PLN02863 74 SIPSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALS 150 (477)
T ss_pred CCCCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHH
Confidence 34444332222 11122222234445555555543 136799999999999999999999999999999999998
Q ss_pred HHhhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHH
Q 011789 157 LYYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEA 236 (477)
Q Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 236 (477)
.+.++.........+........+..+|+++.++.+++..++........+.+.+.+.......++.+++||+++||+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 151 IMYSLWREMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred HHHHHhhcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 88776521110000000000112235788877787777766553222233444444444445667889999999999999
Q ss_pred HHHHHccC--C-EEEeCccCCCCCCc---cccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 237 VTALKAKI--P-FITMGPISLNKFSD---RVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 237 ~~~~~~~~--p-~~~vGp~~~~~~~~---~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
++..+... + ++.|||+....... ...+...+.+ +++.+||+.++++++|||||||++..+.+++.+++.+|+.
T Consensus 231 ~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 231 LEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEK 310 (477)
T ss_pred HHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHh
Confidence 99988753 5 99999997532100 0001011212 6799999999889999999999998899999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCchhHHHhcC-CCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 310 SKVTFIWILRPDIVSSDDPNPLPEDFKKEVA-DRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+.+|||+++.......+...+|++|+++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 311 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 390 (477)
T PLN02863 311 SGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA 390 (477)
T ss_pred CCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999999998542111122358899988765 466677999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 011789 389 TDQFTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMG-EKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIK 465 (477)
Q Consensus 389 ~DQ~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 465 (477)
.||+.||+++++.||+|+.+..++ ..+.+++.++++++|. ++ +||+||++++++.++++.+||||.+++++||+
T Consensus 391 ~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~ 467 (477)
T PLN02863 391 ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ---VERERAKELRRAALDAIKERGSSVKDLDGFVK 467 (477)
T ss_pred ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 999999999877669999994222 4689999999999994 45 99999999999999999999999999999999
Q ss_pred HHHH
Q 011789 466 DLKT 469 (477)
Q Consensus 466 ~~~~ 469 (477)
++++
T Consensus 468 ~i~~ 471 (477)
T PLN02863 468 HVVE 471 (477)
T ss_pred HHHH
Confidence 9974
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.8e-63 Score=492.89 Aligned_cols=432 Identities=29% Similarity=0.566 Sum_probs=336.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcc-hhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFI-HQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (477)
.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+ ... ...+++++..++++++.+
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-------------~~~~~i~~~~i~dglp~g 70 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-------------NNVENLSFLTFSDGFDDG 70 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-------------CCCCCEEEEEcCCCCCCc
Confidence 59999999999999999999999996 6999999999864 2222 210 001268999999888765
Q ss_pred CC-CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 011789 86 FD-RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLL 164 (477)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~ 164 (477)
.+ ...+...++..+...+.+.+.+++..+...+..+++||+|.+..|+..+|+++|||++.+++++++.+..++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 71 VISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred cccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 32 23445556666667778888888887643223459999999999999999999999999999999998877665421
Q ss_pred hhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhcc--CCcEEEEcchhhccHHHHHHHHc
Q 011789 165 TINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTR--NADYVLCNTVHELESEAVTALKA 242 (477)
Q Consensus 165 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~ 242 (477)
. .....+|+++.++.++++.++........+...+.+..+... .++.+++||+++||+..+..++.
T Consensus 151 ~------------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 151 N------------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred C------------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 0 011257788777777777766432222223333333333332 24689999999999999988765
Q ss_pred cCCEEEeCccCCCCC-Cccccc--cccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEE
Q 011789 243 KIPFITMGPISLNKF-SDRVVA--TSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWIL 318 (477)
Q Consensus 243 ~~p~~~vGp~~~~~~-~~~~~~--~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 318 (477)
.|++.|||+..... .....+ ...|++ .++.+|||+++++++|||||||+..++.+++++++.+|+..+.+|||++
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~ 297 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVI 297 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 25999999975321 000000 011332 5799999999888999999999999999999999999999999999999
Q ss_pred cCCCCC-----CCC--CCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccch
Q 011789 319 RPDIVS-----SDD--PNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQ 391 (477)
Q Consensus 319 ~~~~~~-----~~~--~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ 391 (477)
...... ..+ ...+|++|+++.++|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||
T Consensus 298 r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 377 (455)
T PLN02152 298 TDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377 (455)
T ss_pred ecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 753110 000 1135789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 392 FTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 392 ~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
+.||+++++.||+|+.+..++ .++.++|+++|+++|+|+ +++||+||++++++.+++..+||+|.+++++||+++
T Consensus 378 ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 378 PANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred hHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999777777773222 469999999999999865 457999999999999999999999999999999986
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.9e-63 Score=499.61 Aligned_cols=438 Identities=34% Similarity=0.625 Sum_probs=341.5
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecC
Q 011789 3 GNKTQKPHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLS 79 (477)
Q Consensus 3 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (477)
+++....||+++|+|++||++|++.||++|++| ||.|||++++.+...+ .... ..+++|..+|
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--------------~~gi~fv~lp 70 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--------------PDNIRFATIP 70 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--------------CCCEEEEECC
Confidence 456778999999999999999999999999999 9999999999988777 3210 1279999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHh
Q 011789 80 DGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYY 159 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 159 (477)
++++.+.+...+...++..+...+.+.+++++..+. .++|+||+|.++.|+..+|+++|||++.++++++..+..+.
T Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~ 147 (459)
T PLN02448 71 NVIPSELVRAADFPGFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFY 147 (459)
T ss_pred CCCCCccccccCHHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHH
Confidence 766654333344555566555566677777777653 27899999999999999999999999999999998777666
Q ss_pred hhhhhhhcCCcCCCCC--CCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHH
Q 011789 160 HLDLLTINGHFQCYDC--REDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAV 237 (477)
Q Consensus 160 ~~~~~~~~~~~p~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 237 (477)
+++.....+..|.... ......++|+++.++..++..++... .....+.+........+++.+++||+++||+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 225 (459)
T PLN02448 148 HFDLLPQNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAI 225 (459)
T ss_pred HhhhhhhccCCCCccccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHH
Confidence 6543322222222211 01112357877766666666655432 2233444445555566778999999999999988
Q ss_pred HHHHccC-C-EEEeCccCCCCCCc-cccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCe
Q 011789 238 TALKAKI-P-FITMGPISLNKFSD-RVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVT 313 (477)
Q Consensus 238 ~~~~~~~-p-~~~vGp~~~~~~~~-~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 313 (477)
+.++... + ++.|||+....... .........+ .++.+|++.++++++|||||||+...+.+++++++.+|+..+.+
T Consensus 226 ~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 226 DALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 8887764 3 99999997532110 0000000111 47889999988889999999999888889999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhh
Q 011789 314 FIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFT 393 (477)
Q Consensus 314 ~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (477)
|||++... .+++.++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 306 ~lw~~~~~----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~ 375 (459)
T PLN02448 306 FLWVARGE----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPL 375 (459)
T ss_pred EEEEEcCc----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchh
Confidence 99987633 12455555578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeeecCC---C-CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 394 NRKLAVDDWNVGLNLSNE---K-VITKEEVSKNVHLLMGE--KSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 394 na~~v~~~~G~G~~~~~~---~-~~~~~~l~~~i~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
||+++++.||+|+.+..+ . .+++++|+++++++|+| ++|++||+||++++++++++..+||||.+++++|++.+
T Consensus 376 na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~ 455 (459)
T PLN02448 376 NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDI 455 (459)
T ss_pred hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999977999988421 1 46999999999999986 46789999999999999999999999999999999998
Q ss_pred HH
Q 011789 468 KT 469 (477)
Q Consensus 468 ~~ 469 (477)
++
T Consensus 456 ~~ 457 (459)
T PLN02448 456 SQ 457 (459)
T ss_pred hc
Confidence 74
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-62 Score=490.96 Aligned_cols=443 Identities=24% Similarity=0.422 Sum_probs=331.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchh-hhccCCCCCCccccccccCCCCCeEEEecCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQG--FTITFVNTHFIHQ-QMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (477)
.||+|+|++++||++|++.||+.|+.+| ..||+++++.+.. .++.... ......++++|..+|+.....
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~--------~~~~~~~~i~~~~lp~~~~~~ 75 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK--------SIASSQPFVRFIDVPELEEKP 75 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh--------hccCCCCCeEEEEeCCCCCCC
Confidence 5999999999999999999999999998 9999999998652 2211000 000111269999999643211
Q ss_pred C-CCCCcHHHHHHHHHHHhHH----HHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhh
Q 011789 86 F-DRSLNHEQFMSSLLHVFSA----HAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYH 160 (477)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~ 160 (477)
. ....+...++......+.+ .+.+++.....++..+++||+|.++.|+..+|+++|||++.+++++++.+..+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 76 TLGGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred ccccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 1 1123344444333344433 3344443321111234899999999999999999999999999999988877766
Q ss_pred hhhhhhcC-CcCCCCCCCCcccccCCC-CCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHH
Q 011789 161 LDLLTING-HFQCYDCREDTIDYIPGV-KAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVT 238 (477)
Q Consensus 161 ~~~~~~~~-~~p~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~ 238 (477)
++...... ..+.. ..+....+|++ +.++..+++.++..... ...+.+......+++.+++||+++||++.+.
T Consensus 156 ~~~~~~~~~~~~~~--~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 156 LADRHSKDTSVFVR--NSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred hhhccccccccCcC--CCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 54321110 01111 11122357887 56777777766542221 2333344445678899999999999999888
Q ss_pred HHH--ccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEE
Q 011789 239 ALK--AKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFI 315 (477)
Q Consensus 239 ~~~--~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 315 (477)
..+ +..| ++.|||+........+ ....+.++++.+||++++++++|||||||....+.+++++++.+|+..+++||
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~fl 308 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFL 308 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 874 3567 9999999864321111 00112226799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHH
Q 011789 316 WILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNR 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na 395 (477)
|+++.... .....+|++|+++.++|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 309 W~~r~~~~--~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 386 (468)
T PLN02207 309 WSLRTEEV--TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386 (468)
T ss_pred EEEeCCCc--cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhH
Confidence 99985321 1123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceeeecCC-----C-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 011789 396 KLAVDDWNVGLNLSNE-----K-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 396 ~~v~~~~G~G~~~~~~-----~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
+++++.||+|+.+..+ + .++.++|.++|+++|++ ++++||+||+++++++++++.+||||.+++++||++++.
T Consensus 387 ~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 387 FLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9988855999966210 1 35999999999999973 255999999999999999999999999999999999874
No 10
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-62 Score=498.72 Aligned_cols=443 Identities=27% Similarity=0.461 Sum_probs=331.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhh-ccCCCCCCccccccccCC-CCCeEEEecCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQG--FTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKS-GLDIRYMTLSDGLP 83 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 83 (477)
++||+++|++++||++|++.||+.|+.+| ..|||++++.+...+ +.. .+..+.... .+++++..+|++.+
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~lp~~~~ 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSS------AYIASLSASSEDRLRYEVISAGDQ 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhh------hhhhhcccCCCCCeEEEEcCCCCC
Confidence 58999999999999999999999999998 889999998875422 110 000000011 22699999997654
Q ss_pred CCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhc----CCC-ccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHH
Q 011789 84 LGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRS----GEN-VHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLY 158 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~-pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~ 158 (477)
.... ...+..++ ..+.+.+++.++++.+. ... .++||+|.++.|+..+|+++|||++.+++++++.++.+
T Consensus 76 ~~~~-~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 76 PTTE-DPTFQSYI----DNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred Cccc-chHHHHHH----HHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 2211 11222222 34444555555544221 112 38999999999999999999999999999999999888
Q ss_pred hhhhhhhhcCCcCCCCC-CCCcccccCCCC-CCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHH
Q 011789 159 YHLDLLTINGHFQCYDC-REDTIDYIPGVK-AINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEA 236 (477)
Q Consensus 159 ~~~~~~~~~~~~p~~~~-~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 236 (477)
.+++........+.... .......+|+++ +++..+++..+.. ......+.+......+++.+++|++.+||+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 77654322211121110 111122478773 5666666544432 12334444555667788999999999999988
Q ss_pred HHHHHc---cCC-EEEeCccCC-CCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC
Q 011789 237 VTALKA---KIP-FITMGPISL-NKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK 311 (477)
Q Consensus 237 ~~~~~~---~~p-~~~vGp~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~ 311 (477)
...+.. ..| ++.|||+.. ....... ....++++.+||++++++++|||||||+...+.+++.+++.+|+..+
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~---~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~ 303 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSGDDS---KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSG 303 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCcccccccccc---ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcC
Confidence 888775 447 999999943 2211000 00111689999999988899999999998889999999999999999
Q ss_pred CeEEEEEcCCCCC------C--CC-CCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcce
Q 011789 312 VTFIWILRPDIVS------S--DD-PNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPL 382 (477)
Q Consensus 312 ~~~i~~~~~~~~~------~--~~-~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~ 382 (477)
++|||+++..... . .+ ...+|++|+++..+|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 304 ~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~ 383 (481)
T PLN02554 304 HRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPM 383 (481)
T ss_pred CCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCE
Confidence 9999999753100 0 01 1236999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHH-HHhhhcceeeecC---------CC-CcCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHh
Q 011789 383 LCFPLYTDQFTNRKL-AVDDWNVGLNLSN---------EK-VITKEEVSKNVHLLMG-EKSGAKYRNAAKQVKKAMEYAL 450 (477)
Q Consensus 383 v~~P~~~DQ~~na~~-v~~~~G~G~~~~~---------~~-~~~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~ 450 (477)
|++|+++||+.||++ ++++ |+|+.+.. +. .++.++|+++|+++|+ |+ +||+||++++++++++.
T Consensus 384 l~~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~av 459 (481)
T PLN02554 384 AAWPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKCHVAL 459 (481)
T ss_pred EecCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh
Confidence 999999999999955 6677 99999842 12 5799999999999997 66 89999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhh
Q 011789 451 QPNGSSDKNMDQFIKDLKTRIQ 472 (477)
Q Consensus 451 ~~gg~~~~~~~~~~~~~~~~~~ 472 (477)
++||++.+++++||+++++.|+
T Consensus 460 ~~gGss~~~l~~lv~~~~~~~~ 481 (481)
T PLN02554 460 MDGGSSHTALKKFIQDVTKNIA 481 (481)
T ss_pred cCCChHHHHHHHHHHHHHhhCC
Confidence 9999999999999999998874
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.4e-62 Score=488.89 Aligned_cols=435 Identities=26% Similarity=0.425 Sum_probs=333.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCC---
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLA-SQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSD--- 80 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--- 80 (477)
..+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+...+ ..... .+++++..+|.
T Consensus 3 ~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-------------~~~i~~~~lp~p~~ 69 (481)
T PLN02992 3 ITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-------------STGVDIVGLPSPDI 69 (481)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-------------CCCceEEECCCccc
Confidence 4457999999999999999999999998 789999999999887655 32111 01578888884
Q ss_pred -CCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHh
Q 011789 81 -GLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYY 159 (477)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 159 (477)
+++.. ..+....+......+.+.+++++.++. .+|++||+|.++.|+..+|+++|||++.+++++++.++.+.
T Consensus 70 ~glp~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 143 (481)
T PLN02992 70 SGLVDP---SAHVVTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSI 143 (481)
T ss_pred cCCCCC---CccHHHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHH
Confidence 33211 112222233333455666777776542 27899999999999999999999999999999998877666
Q ss_pred hhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHH
Q 011789 160 HLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTA 239 (477)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 239 (477)
+++........+.. .......+|+++.++..++...+.. ........+.+......+++.+++||+.+||+..++.
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~iPg~~~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~ 219 (481)
T PLN02992 144 YYPTLDKDIKEEHT--VQRKPLAMPGCEPVRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKS 219 (481)
T ss_pred hhhhhccccccccc--cCCCCcccCCCCccCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 55422111100100 0111235788877766666643322 1223344445555566788999999999999999988
Q ss_pred HHcc-------CC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC
Q 011789 240 LKAK-------IP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK 311 (477)
Q Consensus 240 ~~~~-------~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~ 311 (477)
++.. .+ ++.|||+....... . +++++.+||+.++++++|||||||+..++.+++++++.+|+..+
T Consensus 220 l~~~~~~~~~~~~~v~~VGPl~~~~~~~-~------~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~ 292 (481)
T PLN02992 220 LQDPKLLGRVARVPVYPIGPLCRPIQSS-K------TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQ 292 (481)
T ss_pred HhhccccccccCCceEEecCccCCcCCC-c------chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcC
Confidence 7642 24 99999997532110 0 11679999999988999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCC--------------CC-CCCCchhHHHhcCCCe-EEEeeccHHHhhccCCCCccccccCCchhhHH
Q 011789 312 VTFIWILRPDIVSS--------------DD-PNPLPEDFKKEVADRS-MIITWCCQTSVLAHPAIGGFLTHCGWNSVLEG 375 (477)
Q Consensus 312 ~~~i~~~~~~~~~~--------------~~-~~~lp~~~~~~~~~nv-~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~ea 375 (477)
.+|||++....... ++ ...+|++|+++..++. .+.+|+||.+||+|+++++|||||||||++||
T Consensus 293 ~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Ea 372 (481)
T PLN02992 293 QRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLES 372 (481)
T ss_pred CCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHH
Confidence 99999996421000 00 2348899999887554 55589999999999999999999999999999
Q ss_pred HhcCcceeccccccchhhHHHHHH-hhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhc--
Q 011789 376 LWCGVPLLCFPLYTDQFTNRKLAV-DDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQ-- 451 (477)
Q Consensus 376 l~~GvP~v~~P~~~DQ~~na~~v~-~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~-- 451 (477)
+++|||||++|+++||+.||++++ ++ |+|+.++.++ .++.++|.++|+++|+|++|+++++++++++++.+++..
T Consensus 373 l~~GVP~l~~P~~~DQ~~na~~~~~~~-g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~ 451 (481)
T PLN02992 373 VVGGVPMIAWPLFAEQNMNAALLSDEL-GIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSID 451 (481)
T ss_pred HHcCCCEEecCccchhHHHHHHHHHHh-CeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999996 66 9999995322 489999999999999988888999999999999999994
Q ss_pred CCCchHHHHHHHHHHHHHhh
Q 011789 452 PNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 452 ~gg~~~~~~~~~~~~~~~~~ 471 (477)
+||||.+++++|++++++-+
T Consensus 452 ~GGSS~~~l~~~v~~~~~~~ 471 (481)
T PLN02992 452 GGGVAHESLCRVTKECQRFL 471 (481)
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 59999999999999998655
No 12
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4e-62 Score=496.46 Aligned_cols=452 Identities=26% Similarity=0.460 Sum_probs=324.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecC---
Q 011789 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLS--- 79 (477)
Q Consensus 4 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~--- 79 (477)
|.+.++||+|+|+|++||++|++.||+.|+.|||+|||++++.+...+ +.+.. +.+... ...-.+.+.++|
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~--~~~~~~---~~~~~~~~~~~p~~~ 75 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEA--FKNLNP---GLEIDIQIFNFPCVE 75 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhh--hcccCC---CCcceEEEeeCCCCc
Confidence 345678999999999999999999999999999999999999988766 33221 000000 000134555555
Q ss_pred CCCCCCCCCCC--------cHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecch
Q 011789 80 DGLPLGFDRSL--------NHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 80 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~ 151 (477)
++++.+.+... ....++..+. ...+.+...++.+..+ .+||+||+|.++.|+..+|+++|||++.+|+++
T Consensus 76 ~glP~g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~ 153 (482)
T PLN03007 76 LGLPEGCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTG 153 (482)
T ss_pred CCCCCCcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeeccc
Confidence 35554422211 1223333332 2223333333433322 379999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhcCCcCCCCCCCCcccccCCCCC---CCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcc
Q 011789 152 ALVFTLYYHLDLLTINGHFQCYDCREDTIDYIPGVKA---INPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNT 228 (477)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 228 (477)
++....+.++....+....+ . ......+|+++. ++...+.. ......+...+....+...+.+.+++|+
T Consensus 154 a~~~~~~~~~~~~~~~~~~~--~--~~~~~~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt 225 (482)
T PLN03007 154 YFSLCASYCIRVHKPQKKVA--S--SSEPFVIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVKSFGVLVNS 225 (482)
T ss_pred HHHHHHHHHHHhcccccccC--C--CCceeeCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhcccCCEEEEEC
Confidence 88776655443211101111 0 011112566542 11112221 1122223444445555667888999999
Q ss_pred hhhccHHHHHHHHccC-C-EEEeCccCCCCCCc---cccccccCC-ccccchhhccCCCCcEEEEEecccccCCHHHHHH
Q 011789 229 VHELESEAVTALKAKI-P-FITMGPISLNKFSD---RVVATSLWS-ESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIE 302 (477)
Q Consensus 229 ~~~l~~~~~~~~~~~~-p-~~~vGp~~~~~~~~---~~~~~~~~~-~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~ 302 (477)
+++||++..+.+++.. + +++|||+....... ...+...+. ++++.+||++++++++|||||||+...+.+.+.+
T Consensus 226 ~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 305 (482)
T PLN03007 226 FYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFE 305 (482)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHH
Confidence 9999999888887654 3 99999976432110 000001111 2678999999988999999999998888899999
Q ss_pred HHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcc
Q 011789 303 IANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVP 381 (477)
Q Consensus 303 ~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP 381 (477)
++.+|+..+.+|||+++......+....+|++|+++. +.|+.+.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP 385 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLP 385 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCC
Confidence 9999999999999999864211111235899998876 467788899999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhhcceeeecC------CC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCC
Q 011789 382 LLCFPLYTDQFTNRKLAVDDWNVGLNLSN------EK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNG 454 (477)
Q Consensus 382 ~v~~P~~~DQ~~na~~v~~~~G~G~~~~~------~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg 454 (477)
||++|+++||+.||+++++.|++|+.+.. +. .++.++|.++|+++|+|++|++||+||++++++.++++.+||
T Consensus 386 ~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gG 465 (482)
T PLN03007 386 MVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGG 465 (482)
T ss_pred eeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999865566655410 12 579999999999999998889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHh
Q 011789 455 SSDKNMDQFIKDLKTR 470 (477)
Q Consensus 455 ~~~~~~~~~~~~~~~~ 470 (477)
||.+++++|++.++++
T Consensus 466 sS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 466 SSFNDLNKFMEELNSR 481 (482)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999998853
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.6e-62 Score=489.17 Aligned_cols=444 Identities=24% Similarity=0.415 Sum_probs=331.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecC----CC
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLS----DG 81 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~----~~ 81 (477)
..+.||+++|++++||++|++.||+.|+.||..|||++++.+...+..... ....++++..+| ++
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-----------~~~~~i~~~~lp~p~~dg 72 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-----------QLSSSITLVSFPLPSVPG 72 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-----------cCCCCeeEEECCCCccCC
Confidence 345699999999999999999999999999999999999988766532110 111258888888 56
Q ss_pred CCCCCCCCCcHH----HHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHH
Q 011789 82 LPLGFDRSLNHE----QFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTL 157 (477)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~ 157 (477)
++.+.+...++. .++....+.+.+.+++++.+. .+++||+|.+..|+..+|+++|||++.++++++..+..
T Consensus 73 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~ 147 (472)
T PLN02670 73 LPSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSF 147 (472)
T ss_pred CCCCcccccccchhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHH
Confidence 665533222221 234444456666777776654 78999999999999999999999999999999988877
Q ss_pred HhhhhhhhhcCCcCCCCCCC-CcccccCCCCC--CCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccH
Q 011789 158 YYHLDLLTINGHFQCYDCRE-DTIDYIPGVKA--INPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELES 234 (477)
Q Consensus 158 ~~~~~~~~~~~~~p~~~~~~-~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~ 234 (477)
+.+.......+..+...... ..+.++|..+. ++..++..++............+.+......+++.+++||+.+||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~ 227 (472)
T PLN02670 148 IGPPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEP 227 (472)
T ss_pred HhhhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhH
Confidence 65443222222222111110 01112232221 3334555544322212122222333334556788999999999999
Q ss_pred HHHHHHHccC-C-EEEeCccCCC-CCCccc--cccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 235 EAVTALKAKI-P-FITMGPISLN-KFSDRV--VATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 235 ~~~~~~~~~~-p-~~~vGp~~~~-~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
..++.++... + ++.|||+... ...... .....| +++.+|||+++++++|||||||+..++.+++.+++.+|+.
T Consensus 228 ~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~--~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 228 EWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGW--VRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHHHHHHhhCCCeEEEecCCccccccccccccccchh--HHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 9999987753 4 9999999753 111000 000112 5799999999889999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCC-CCCCchhHHHhcCCCeEE-EeeccHHHhhccCCCCccccccCCchhhHHHhcCcceecccc
Q 011789 310 SKVTFIWILRPDIVSSDD-PNPLPEDFKKEVADRSMI-ITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL 387 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~~~~-~~~lp~~~~~~~~~nv~v-~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 387 (477)
.+.+|||++........+ ...+|++|+++..++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 385 (472)
T PLN02670 306 SETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPV 385 (472)
T ss_pred CCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcc
Confidence 999999999853110111 235899999998776666 489999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhhcceeeecCCC---CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 011789 388 YTDQFTNRKLAVDDWNVGLNLSNEK---VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 388 ~~DQ~~na~~v~~~~G~G~~~~~~~---~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 464 (477)
++||+.||+++++. |+|+.+...+ .++.++|+++|+++|+|++|++||+||+++++++++ .+...+++++|+
T Consensus 386 ~~DQ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~ 460 (472)
T PLN02670 386 LNEQGLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELV 460 (472)
T ss_pred hhccHHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHH
Confidence 99999999999987 9999994211 389999999999999988888999999999999997 577789999999
Q ss_pred HHHHHhhh
Q 011789 465 KDLKTRIQ 472 (477)
Q Consensus 465 ~~~~~~~~ 472 (477)
+.|.+...
T Consensus 461 ~~l~~~~~ 468 (472)
T PLN02670 461 HYLRENRS 468 (472)
T ss_pred HHHHHhcc
Confidence 99987653
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-61 Score=486.79 Aligned_cols=447 Identities=28% Similarity=0.491 Sum_probs=327.2
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecC----
Q 011789 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLS---- 79 (477)
Q Consensus 4 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~---- 79 (477)
++.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+..... .....+..++|+.+|
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~--------~~~~~~~~i~~~~lp~p~~ 75 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTID--------RARESGLPIRLVQIPFPCK 75 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhh--------hccccCCCeEEEEcCCCCc
Confidence 34556799999999999999999999999999999999999998765522110 000001148888887
Q ss_pred -CCCCCCCCCCCcH--HHHHHH---HHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhH
Q 011789 80 -DGLPLGFDRSLNH--EQFMSS---LLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESAL 153 (477)
Q Consensus 80 -~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~ 153 (477)
++++.+.+...++ ..++.. ....+.+.+.+++... ..+|++||+|.++.|+..+|+++|||++.+++++++
T Consensus 76 ~dglp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~ 152 (491)
T PLN02534 76 EVGLPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCF 152 (491)
T ss_pred cCCCCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHH
Confidence 5776553322211 122222 2234455566665542 136899999999999999999999999999999998
Q ss_pred HHHHHhhhhhhhhcCCcCCCCCCCCcccccCCCCC---CCCCCCccccccCCCchhHHHHHHHHhh-hccCCcEEEEcch
Q 011789 154 VFTLYYHLDLLTINGHFQCYDCREDTIDYIPGVKA---INPKDTTSYLQETDTTSACHQIIFNSFQ-DTRNADYVLCNTV 229 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~ 229 (477)
....+.++..... ..+... +..+..+|+++. ++..++...+.... ..+.+..... ....++.+++||+
T Consensus 153 ~~~~~~~~~~~~~--~~~~~~--~~~~~~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf 224 (491)
T PLN02534 153 SLLSSHNIRLHNA--HLSVSS--DSEPFVVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSF 224 (491)
T ss_pred HHHHHHHHHHhcc--cccCCC--CCceeecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecH
Confidence 8766543321111 111111 111234677653 44444544332111 1122222222 2345678999999
Q ss_pred hhccHHHHHHHHccC-C-EEEeCccCCCCCCccccc--cccC--CccccchhhccCCCCcEEEEEecccccCCHHHHHHH
Q 011789 230 HELESEAVTALKAKI-P-FITMGPISLNKFSDRVVA--TSLW--SESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEI 303 (477)
Q Consensus 230 ~~l~~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~--~~~~--~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~ 303 (477)
.+||+..++.++... + ++.|||+........... ...+ +++++.+|||.++++++|||||||......+++.++
T Consensus 225 ~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~ 304 (491)
T PLN02534 225 NELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIEL 304 (491)
T ss_pred HHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 999999999887754 5 999999975211000000 0011 115699999999889999999999998999999999
Q ss_pred HHHHHhCCCeEEEEEcCCCCCCC-CCCCCchhHHHhc-CCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcc
Q 011789 304 ANGIAKSKVTFIWILRPDIVSSD-DPNPLPEDFKKEV-ADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVP 381 (477)
Q Consensus 304 ~~al~~~~~~~i~~~~~~~~~~~-~~~~lp~~~~~~~-~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP 381 (477)
+.+|+..+.+|||+++.+....+ +...+|++|+++. +.++.+.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 305 a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 305 GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 99999999999999984311000 1124689999875 467777799999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhhcceeeecC------C-----C-CcCHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Q 011789 382 LLCFPLYTDQFTNRKLAVDDWNVGLNLSN------E-----K-VITKEEVSKNVHLLMG--EKSGAKYRNAAKQVKKAME 447 (477)
Q Consensus 382 ~v~~P~~~DQ~~na~~v~~~~G~G~~~~~------~-----~-~~~~~~l~~~i~~~l~--~~~~~~~~~~a~~l~~~~~ 447 (477)
||++|++.||+.||+++++.||+|+.+.. . . .++.++|+++|+++|. +++|+++|+||++++++.+
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999988899998721 0 1 2689999999999997 4667899999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHH
Q 011789 448 YALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 448 ~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
+++.+||||.+++++||+++++
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999974
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.4e-61 Score=487.13 Aligned_cols=441 Identities=26% Similarity=0.455 Sum_probs=334.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hhccCCCCCCccccccccCCCCCeEEEecC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQG----FTITFVNTHFIHQ----QMTKASPEMGSDIFAGVRKSGLDIRYMTLS 79 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (477)
+.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+..... +....+.++++..+|
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~lp 74 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVR--------REAASGLDIRFHHLP 74 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHh--------hcccCCCCEEEEECC
Confidence 46999999999999999999999999997 7899999877532 2211000 000111158999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHh
Q 011789 80 DGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYY 159 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 159 (477)
++.... ...+...++..+...+.+.+++++..+ . ..+++||+|.+..|+..+|+++|||++.+++++++.+..+.
T Consensus 75 ~~~~p~--~~e~~~~~~~~~~~~~~~~l~~~L~~l-~--~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 75 AVEPPT--DAAGVEEFISRYIQLHAPHVRAAIAGL-S--CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred CCCCCC--ccccHHHHHHHHHHhhhHHHHHHHHhc-C--CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 764221 112334555555566677777777665 1 25699999999999999999999999999999999888777
Q ss_pred hhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHH
Q 011789 160 HLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTA 239 (477)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 239 (477)
+++........+.... . ....+|+++.++..+++..+.... +.....+....+...+++.+++||+++||+..+..
T Consensus 150 ~~~~~~~~~~~~~~~~-~-~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 150 RLPALDEEVAVEFEEM-E-GAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhcccccCccccc-C-cceecCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 6643211100011110 1 112478887777777776554321 12233444444556788899999999999999988
Q ss_pred HHcc-------CC-EEEeCccCCCCCCccccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhC
Q 011789 240 LKAK-------IP-FITMGPISLNKFSDRVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKS 310 (477)
Q Consensus 240 ~~~~-------~p-~~~vGp~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~ 310 (477)
++.. .| ++.|||+........ .+.+ +++.+||++++++++|||||||+...+.+++.+++.+|+..
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~~-----~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s 300 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTPP-----AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERS 300 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccCC-----CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 8763 26 999999974321100 1112 67999999998899999999999888999999999999999
Q ss_pred CCeEEEEEcCCCCCC-------CCCCCCchhHHHhcCCCeEEE-eeccHHHhhccCCCCccccccCCchhhHHHhcCcce
Q 011789 311 KVTFIWILRPDIVSS-------DDPNPLPEDFKKEVADRSMII-TWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPL 382 (477)
Q Consensus 311 ~~~~i~~~~~~~~~~-------~~~~~lp~~~~~~~~~nv~v~-~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~ 382 (477)
+.+|||++....... +....+|++|+++..++..++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 301 ~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~ 380 (480)
T PLN00164 301 GHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPM 380 (480)
T ss_pred CCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCE
Confidence 999999998542100 011248899998887666655 899999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHhhhcceeeecCC---C-CcCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhcCCCch
Q 011789 383 LCFPLYTDQFTNRKLAVDDWNVGLNLSNE---K-VITKEEVSKNVHLLMGEK--SGAKYRNAAKQVKKAMEYALQPNGSS 456 (477)
Q Consensus 383 v~~P~~~DQ~~na~~v~~~~G~G~~~~~~---~-~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~ 456 (477)
|++|+++||+.||+++++.||+|+.+..+ + .++.++|.++|+++|.|+ +|+.+|++|+++++++++++++||||
T Consensus 381 l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS 460 (480)
T PLN00164 381 APWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSS 460 (480)
T ss_pred EeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999887655999998421 1 368999999999999875 47889999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011789 457 DKNMDQFIKDLKTR 470 (477)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (477)
.+++++||++++++
T Consensus 461 ~~~l~~~v~~~~~~ 474 (480)
T PLN00164 461 YAALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-61 Score=478.74 Aligned_cols=433 Identities=27% Similarity=0.449 Sum_probs=324.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCC
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQG--FTITF--VNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGL 82 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (477)
...||+++|++++||++||+.||+.|+.+| +.||+ ++++.+...+..... ......+++++..+|++.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~lp~~~ 73 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS--------SVSSSFPSITFHHLPAVT 73 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc--------cccCCCCCeEEEEcCCCC
Confidence 346999999999999999999999999998 56666 444433322211000 000111269999999765
Q ss_pred CCCC--CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhh
Q 011789 83 PLGF--DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYH 160 (477)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~ 160 (477)
+... ....+....+......+.+.+.+++..+... ..+++||+|.+..|+..+|+++|||++.+++++++.+..+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 74 PYSSSSTSRHHHESLLLEILCFSNPSVHRTLFSLSRN-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred CCCCccccccCHHHHHHHHHHhhhHHHHHHHHhcCCC-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 3221 2222333344344456677777777766321 245999999999999999999999999999999999888877
Q ss_pred hhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHH
Q 011789 161 LDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTAL 240 (477)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 240 (477)
++..... .+...........+|+++.++.+++...+.... ......+.+..+...+++.+++||+++||+..++.+
T Consensus 153 ~~~~~~~--~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l 228 (451)
T PLN03004 153 LPTIDET--TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI 228 (451)
T ss_pred HHhcccc--ccccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH
Confidence 5532111 111110111223578888778888877665322 233444455555667788999999999999999998
Q ss_pred Hcc--CC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEE
Q 011789 241 KAK--IP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWI 317 (477)
Q Consensus 241 ~~~--~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 317 (477)
++. .+ ++.|||+......... ..+.+.++.+|||.++++++|||||||+..++.+++++++.+|+..+.+|||+
T Consensus 229 ~~~~~~~~v~~vGPl~~~~~~~~~---~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~ 305 (451)
T PLN03004 229 TEELCFRNIYPIGPLIVNGRIEDR---NDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWV 305 (451)
T ss_pred HhcCCCCCEEEEeeeccCcccccc---ccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 764 25 9999999753211100 01112569999999988999999999999999999999999999999999999
Q ss_pred EcCCCCCCC---CCC-CCchhHHHhcCC-CeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchh
Q 011789 318 LRPDIVSSD---DPN-PLPEDFKKEVAD-RSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQF 392 (477)
Q Consensus 318 ~~~~~~~~~---~~~-~lp~~~~~~~~~-nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~ 392 (477)
++....... +.. .+|++|+++..+ |+.+.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+
T Consensus 306 ~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~ 385 (451)
T PLN03004 306 VRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQR 385 (451)
T ss_pred EcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccch
Confidence 985311000 112 289999998864 667779999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHH
Q 011789 393 TNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDK 458 (477)
Q Consensus 393 ~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 458 (477)
.||+++++.||+|+.+..++ .++.++|+++|+++|+|+ +|++|+++++++.+.++++||||++
T Consensus 386 ~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 386 FNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999987669999995321 469999999999999988 9999999999999999999999864
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8.2e-61 Score=478.24 Aligned_cols=418 Identities=23% Similarity=0.382 Sum_probs=310.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEec--C--C
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTL--S--D 80 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l--~--~ 80 (477)
+.+.||+++|++++||++|++.||+.|+.+||+|||++++.+...+ +.+. ....+++..+ + +
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a-------------~~~~i~~~~l~~p~~d 68 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL-------------FPDSIVFHPLTIPPVN 68 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC-------------CCCceEEEEeCCCCcc
Confidence 4568999999999999999999999999999999999999887766 3321 1114455544 3 4
Q ss_pred CCCCCCCCCCcHH----HHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHH
Q 011789 81 GLPLGFDRSLNHE----QFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFT 156 (477)
Q Consensus 81 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~ 156 (477)
+++.+.+...++. .++........+.++++++.+ .+|+||+| ++.|+..+|+++|||++.+|+++++.+.
T Consensus 69 gLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~-----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~ 142 (442)
T PLN02208 69 GLPAGAETTSDIPISMDNLLSEALDLTRDQVEAAVRAL-----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA 142 (442)
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH
Confidence 5665533222232 222222344455555555543 78999999 5789999999999999999999998654
Q ss_pred HHhhhhhhhhcCCcCCCCCCCCcccccCCCCC----CCCCCCccccccCCCchhHHHHHH-HHhhhccCCcEEEEcchhh
Q 011789 157 LYYHLDLLTINGHFQCYDCREDTIDYIPGVKA----INPKDTTSYLQETDTTSACHQIIF-NSFQDTRNADYVLCNTVHE 231 (477)
Q Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~ 231 (477)
+.+++. ...+ ..+|+++. ++..++..+ .........+. +..+...+++.+++||+.+
T Consensus 143 -~~~~~~----~~~~---------~~~pglp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~e 204 (442)
T PLN02208 143 -HTHVPG----GKLG---------VPPPGYPSSKVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKE 204 (442)
T ss_pred -HHccCc----cccC---------CCCCCCCCcccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHH
Confidence 443321 1000 01244433 223333321 11112222222 2224456789999999999
Q ss_pred ccHHHHHHHHcc-CC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 232 LESEAVTALKAK-IP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 232 l~~~~~~~~~~~-~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
||+..++..+.. .| ++.|||+........++ ++++.+|||.++++++|||||||+..++.+.+.+++.+++.
T Consensus 205 LE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~------~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~ 278 (442)
T PLN02208 205 IEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPL------EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMEL 278 (442)
T ss_pred HHHHHHHHHHhhcCCCEEEEeecccCcCCCCCC------HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHh
Confidence 999998887664 36 99999998643211111 17899999999888999999999998899989999998888
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCchhHHHhcC-CCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 310 SKVTFIWILRPDIVSSDDPNPLPEDFKKEVA-DRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+.+++|++..+.........+|++|+++.. .|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 279 s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~ 358 (442)
T PLN02208 279 TGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL 358 (442)
T ss_pred CCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc
Confidence 8888999887541101122468999999876 456666899999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 011789 389 TDQFTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGEK--SGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 389 ~DQ~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 464 (477)
+||+.||+++++.||+|+.+..++ .++.++|.++|+++|+|+ +|+++|++|+++++++.+ +|||.+++++||
T Consensus 359 ~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v 434 (442)
T PLN02208 359 SDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFV 434 (442)
T ss_pred hhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence 999999999887559999994211 289999999999999875 478899999999999853 789999999999
Q ss_pred HHHHHh
Q 011789 465 KDLKTR 470 (477)
Q Consensus 465 ~~~~~~ 470 (477)
+++++.
T Consensus 435 ~~l~~~ 440 (442)
T PLN02208 435 EELQEY 440 (442)
T ss_pred HHHHHh
Confidence 999764
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-60 Score=474.10 Aligned_cols=428 Identities=23% Similarity=0.386 Sum_probs=321.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecC--CCCC
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLS--DGLP 83 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 83 (477)
..++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+..... . ...-.+.+..+| ++++
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~---------~-~~~~~v~~~~~p~~~glp 72 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNL---------F-PHNIVFRSVTVPHVDGLP 72 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccccc---------C-CCCceEEEEECCCcCCCC
Confidence 345899999999999999999999999999999999999997655522000 0 000147787787 6666
Q ss_pred CCCCCCCcHH----HHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHh
Q 011789 84 LGFDRSLNHE----QFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYY 159 (477)
Q Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 159 (477)
.+.+...++. ..+........+.+.+++... +||+||+|. ..|+..+|+++|||++.+++++++.+..+.
T Consensus 73 ~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~ 146 (453)
T PLN02764 73 VGTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASML 146 (453)
T ss_pred CcccccccCChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHh
Confidence 5533221111 122222244556666666654 789999995 779999999999999999999998877664
Q ss_pred hhhhhhhcCCcCCCCCCCCcccccCCCCC----CCCCCCccccc--cCCCchhHHHHHHHHhhhccCCcEEEEcchhhcc
Q 011789 160 HLDLLTINGHFQCYDCREDTIDYIPGVKA----INPKDTTSYLQ--ETDTTSACHQIIFNSFQDTRNADYVLCNTVHELE 233 (477)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~ 233 (477)
. + ...++ ...|+++. ++.++...+.. ...........+.+..+...+++.+++||+++||
T Consensus 147 ~-~----~~~~~---------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE 212 (453)
T PLN02764 147 V-P----GGELG---------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIE 212 (453)
T ss_pred c-c----cccCC---------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhh
Confidence 2 1 11111 01244432 33333333211 0011112223333333556778899999999999
Q ss_pred HHHHHHHHccC-C-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC
Q 011789 234 SEAVTALKAKI-P-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK 311 (477)
Q Consensus 234 ~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~ 311 (477)
+..+..++... + ++.|||+......... .++++.+|||.++++++|||||||...++.+++.+++.+|+..+
T Consensus 213 ~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~------~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~ 286 (453)
T PLN02764 213 GNFCDYIEKHCRKKVLLTGPVFPEPDKTRE------LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTG 286 (453)
T ss_pred HHHHHHHHhhcCCcEEEeccCccCcccccc------chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 99999987753 5 9999999753211000 11679999999999999999999999899999999999999999
Q ss_pred CeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEE-eeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccc
Q 011789 312 VTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMII-TWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTD 390 (477)
Q Consensus 312 ~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~-~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~D 390 (477)
.+|+|++.......+....+|++|+++..++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 287 ~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~D 366 (453)
T PLN02764 287 SPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGD 366 (453)
T ss_pred CCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccc
Confidence 99999998532101113469999999987666655 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 011789 391 QFTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGE--KSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKD 466 (477)
Q Consensus 391 Q~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 466 (477)
|+.||+++++.||+|+.+..++ .++.++|+++++++|++ ++|+++|++++++++++++ ||||.+++++||++
T Consensus 367 Q~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~ 442 (453)
T PLN02764 367 QVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIES 442 (453)
T ss_pred hHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Confidence 9999999976559999973211 47999999999999987 4467899999999999975 89999999999999
Q ss_pred HHHhhhh
Q 011789 467 LKTRIQS 473 (477)
Q Consensus 467 ~~~~~~~ 473 (477)
+++....
T Consensus 443 ~~~~~~~ 449 (453)
T PLN02764 443 LQDLVSG 449 (453)
T ss_pred HHHhccc
Confidence 9987643
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.3e-60 Score=471.78 Aligned_cols=438 Identities=25% Similarity=0.395 Sum_probs=332.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQ-GFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG 85 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (477)
+.||+++|++++||++|++.||+.|+.+ |..||+++++.....+ ... +..+... .+++++..+|+....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~-------~~~~~~~-~~~i~~~~lp~~~~~~ 74 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETE-------AIHAAAA-RTTCQITEIPSVDVDN 74 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccc-------ccccccC-CCceEEEECCCCcccc
Confidence 3599999999999999999999999987 9999999988766443 110 0000000 1258999998543222
Q ss_pred C-CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCc-eEEEecchhHHHHHHhhhhh
Q 011789 86 F-DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLY-YISFWTESALVFTLYYHLDL 163 (477)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP-~v~~~~~~~~~~~~~~~~~~ 163 (477)
. ....+....+......+.+.+++++..+.. ++++||+|.++.|+..+|+++||| .+.+++++++.+..+++++.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 75 LVEPDATIFTKMVVKMRAMKPAVRDAVKSMKR---KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred CCCCCccHHHHHHHHHHhchHHHHHHHHhcCC---CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 1 111133323333335677778888776532 689999999999999999999999 58888888877766666543
Q ss_pred hhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHcc
Q 011789 164 LTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAK 243 (477)
Q Consensus 164 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 243 (477)
... ..+.........-.+|+++.++..+++..+.... ......+....+...+++.+++||+++||+..++.++..
T Consensus 152 ~~~--~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 152 LDT--VVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred hhc--ccccccCCCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 211 1111000101123588888788777776554321 122333334445578899999999999999999888764
Q ss_pred -------CC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEE
Q 011789 244 -------IP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFI 315 (477)
Q Consensus 244 -------~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 315 (477)
.| ++.|||+........ .++++.+|||.++++++|||||||...++.++..+++.+|+..+.+||
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~~~~-------~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNVHVE-------KRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred cccccccCCceEEecCCCCCccccc-------chHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 25 999999974321100 115799999999889999999999999999999999999999999999
Q ss_pred EEEcCCCC-----C--CC-CCCCCchhHHHhcCCCeEE-EeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccc
Q 011789 316 WILRPDIV-----S--SD-DPNPLPEDFKKEVADRSMI-ITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFP 386 (477)
Q Consensus 316 ~~~~~~~~-----~--~~-~~~~lp~~~~~~~~~nv~v-~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P 386 (477)
|++..... . .+ ....+|++|+++..++..+ .+|+||.+||+|+++++|||||||||+.|++++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 99974211 0 00 1125899999998777655 58999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhhhcceeeecC--CC-CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 011789 387 LYTDQFTNRKLAVDDWNVGLNLSN--EK-VITKEEVSKNVHLLMGE--KSGAKYRNAAKQVKKAMEYALQPNGSSDKNMD 461 (477)
Q Consensus 387 ~~~DQ~~na~~v~~~~G~G~~~~~--~~-~~~~~~l~~~i~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 461 (477)
+++||+.||+++++.||+|+.+.. ++ .++.+++.++|+++|++ ++|+++|+||++++++.+++.++||||.++++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999777799999941 12 58999999999999963 66889999999999999999999999999999
Q ss_pred HHHHHH
Q 011789 462 QFIKDL 467 (477)
Q Consensus 462 ~~~~~~ 467 (477)
+|++.+
T Consensus 461 ~~~~~~ 466 (470)
T PLN03015 461 EWAKRC 466 (470)
T ss_pred HHHHhc
Confidence 999886
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5e-60 Score=479.69 Aligned_cols=444 Identities=26% Similarity=0.396 Sum_probs=324.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hhccCCCCCCccccccccCCCCCeEEEecCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGF---TITFVNTHFIHQ-QMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLP 83 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (477)
+.||+++|++++||++|++.||+.|+.+|. .||++++..... ...... .+.....++++|..+|++..
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~--------~~~~~~~~~i~~~~lp~~~~ 74 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFL--------KSLIASEPRIRLVTLPEVQD 74 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHH--------hhcccCCCCeEEEECCCCCC
Confidence 459999999999999999999999999983 567766554321 111000 00001112699999996542
Q ss_pred C-CCCC-CCcHHHHHHHHHHHhHHHHHHHHHHhHhc----CC-CccEEEecCCCcchHHHHHHhCCceEEEecchhHHHH
Q 011789 84 L-GFDR-SLNHEQFMSSLLHVFSAHAEEVIGQIVRS----GE-NVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFT 156 (477)
Q Consensus 84 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~-~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~ 156 (477)
. +.+. .......+..+...+.+.+++.++.+..+ +. .+++||+|.++.|+..+|+++|||++.+++++++.+.
T Consensus 75 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 75 PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 1 1110 11122233334455566666666665321 11 3599999999999999999999999999999998888
Q ss_pred HHhhhhhhhhcCCcCCCCCCCCcccccCCC-CCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHH
Q 011789 157 LYYHLDLLTINGHFQCYDCREDTIDYIPGV-KAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESE 235 (477)
Q Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 235 (477)
.+.+++........+......+....+|++ +.++..++...+.... ..+.+....+...+++.+++||+++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 777654321110001111010112247777 3455555554333211 13334444455678889999999999999
Q ss_pred HHHHHHcc---CC-EEEeCccCCCCCCccccccccC-Cc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 236 AVTALKAK---IP-FITMGPISLNKFSDRVVATSLW-SE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 236 ~~~~~~~~---~p-~~~vGp~~~~~~~~~~~~~~~~-~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
.+..++.. .| ++.|||+......... ..+ .+ +++.+||+.++++++|||||||+...+.+++.+++.+|+.
T Consensus 231 ~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~---~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 231 AFDYFSRLPENYPPVYPVGPILSLKDRTSP---NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred HHHHHHhhcccCCeeEEeccccccccccCC---CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 99888653 47 9999999764321000 111 11 5799999999889999999999988889999999999999
Q ss_pred CCCeEEEEEcCCCCC-CCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 310 SKVTFIWILRPDIVS-SDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~-~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+.+|||+++..... ......+|++|+++..+++++++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 999999999753210 0112358999999998889999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHH-HHhhhcceeeecCC-----C-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 011789 389 TDQFTNRKL-AVDDWNVGLNLSNE-----K-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMD 461 (477)
Q Consensus 389 ~DQ~~na~~-v~~~~G~G~~~~~~-----~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 461 (477)
+||+.||++ +++. |+|+.+..+ + .++.++|.++|+++|+++ ++||+||+++++++++++.+||||.++++
T Consensus 388 ~DQ~~na~~~~~~~-g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~ 464 (475)
T PLN02167 388 AEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVK 464 (475)
T ss_pred ccchhhHHHHHHHh-CeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999987 5555 999988421 1 469999999999999753 27999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011789 462 QFIKDLKT 469 (477)
Q Consensus 462 ~~~~~~~~ 469 (477)
+||+++++
T Consensus 465 ~~v~~i~~ 472 (475)
T PLN02167 465 RFIDDLLG 472 (475)
T ss_pred HHHHHHHh
Confidence 99999875
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2e-59 Score=468.84 Aligned_cols=417 Identities=24% Similarity=0.384 Sum_probs=308.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEec--C--CC
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTL--S--DG 81 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l--~--~~ 81 (477)
++.||+++|++++||++|++.||+.|+++|++|||++++.+...+ ..+. ..+++++..+ | ++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-------------~~~~i~~~~i~lP~~dG 69 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-------------FPDSIVFEPLTLPPVDG 69 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-------------CCCceEEEEecCCCcCC
Confidence 457999999999999999999999999999999999999887666 3211 1114677544 3 56
Q ss_pred CCCCCCCCCcHH----HHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHH
Q 011789 82 LPLGFDRSLNHE----QFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTL 157 (477)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~ 157 (477)
++.+.+...++. ..+........+.+++++.. ..||+||+|. +.|+..+|+++|||++.+++++++.+..
T Consensus 70 LP~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~-----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 70 LPFGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRA-----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred CCCcccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 665533222221 12222223344444444433 2789999995 7899999999999999999999988876
Q ss_pred HhhhhhhhhcCCcCCCCCCCCcccccCCCCC----CCCCC--CccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhh
Q 011789 158 YYHLDLLTINGHFQCYDCREDTIDYIPGVKA----INPKD--TTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHE 231 (477)
Q Consensus 158 ~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 231 (477)
+.+... ... . ..|+++. ++..+ +..++.. ....+.+..+...+++.+++||+.+
T Consensus 144 ~~~~~~--~~~-~-----------~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~e 203 (446)
T PLN00414 144 VLAPRA--ELG-F-----------PPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVE 203 (446)
T ss_pred HhCcHh--hcC-C-----------CCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHH
Confidence 654210 000 0 1133322 11111 1111110 1122333344556789999999999
Q ss_pred ccHHHHHHHHccC-C-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 011789 232 LESEAVTALKAKI-P-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK 309 (477)
Q Consensus 232 l~~~~~~~~~~~~-p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~ 309 (477)
||+..++..+... + ++.|||+......... . ..++++.+|||.++++++|||||||....+.+++.+++.+|+.
T Consensus 204 LE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~---~-~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~ 279 (446)
T PLN00414 204 LEGNLCDFIERQCQRKVLLTGPMLPEPQNKSG---K-PLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMEL 279 (446)
T ss_pred HHHHHHHHHHHhcCCCeEEEcccCCCcccccC---c-ccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHH
Confidence 9999999887753 4 9999999753311000 0 0115689999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEE-eeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 310 SKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMII-TWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 310 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~-~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+.+|+|++.......+....+|++|++++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 280 s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 359 (446)
T PLN00414 280 TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL 359 (446)
T ss_pred cCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc
Confidence 9999999997532111112469999999998888776 799999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 011789 389 TDQFTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGEK--SGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 389 ~DQ~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 464 (477)
.||+.||+++++.||+|+.+..++ .++.++|+++++++|+|+ .|++||++|+++++.+.+ +||++ .++++||
T Consensus 360 ~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v 435 (446)
T PLN00414 360 ADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFV 435 (446)
T ss_pred cchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHH
Confidence 999999999976559999994211 389999999999999874 467899999999999754 57744 3489999
Q ss_pred HHHHHh
Q 011789 465 KDLKTR 470 (477)
Q Consensus 465 ~~~~~~ 470 (477)
+++++.
T Consensus 436 ~~~~~~ 441 (446)
T PLN00414 436 EALENE 441 (446)
T ss_pred HHHHHh
Confidence 999654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-49 Score=402.44 Aligned_cols=394 Identities=15% Similarity=0.205 Sum_probs=266.9
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCC--C
Q 011789 9 PHAIFI-SYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPL--G 85 (477)
Q Consensus 9 ~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 85 (477)
.||+.+ |.++.+|..-+-+|+++|++|||+||++++......-..... ++..+.++..... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~ 85 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCG---------------NITEIDASLSVEYFKK 85 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCC---------------CEEEEEcCCChHHHHH
Confidence 468755 889999999999999999999999999977542111010011 4555554310000 0
Q ss_pred -CCCC------C---cH----HHHHHHHHHHhHHHH--HHHHHHhHhcCCCccEEEecCCCcchHHHHHHh-CCceEEEe
Q 011789 86 -FDRS------L---NH----EQFMSSLLHVFSAHA--EEVIGQIVRSGENVHCLIADTYFVWPSKLAKKF-GLYYISFW 148 (477)
Q Consensus 86 -~~~~------~---~~----~~~~~~~~~~~~~~~--~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~-gIP~v~~~ 148 (477)
.... . +. ......+...+...+ .++.+.+..+..++|++|+|.+..|+..+|+++ ++|.|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~s 165 (507)
T PHA03392 86 LVKSSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQIS 165 (507)
T ss_pred HHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEc
Confidence 0000 0 00 001111122232222 122333331113799999998888999999999 99998887
Q ss_pred cchhHHHHHHhhhh-hhhhcCCcCCCCCC-CCcccccCCCCCCCCCCCccccccC--CCchhHHHHH-HH----Hhhhcc
Q 011789 149 TESALVFTLYYHLD-LLTINGHFQCYDCR-EDTIDYIPGVKAINPKDTTSYLQET--DTTSACHQII-FN----SFQDTR 219 (477)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~----~~~~~~ 219 (477)
+....... ..... .+.+..++|..... ++.++++.++.++.......+.... ...+.+.+.. .. ..+...
T Consensus 166 s~~~~~~~-~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~ 244 (507)
T PHA03392 166 SGYGLAEN-FETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRN 244 (507)
T ss_pred CCCCchhH-HHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHh
Confidence 75554322 12222 33333444443332 3333333333221100000000000 0011111111 11 123446
Q ss_pred CCcEEEEcchhhccHHHHHHHHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEeccccc---C
Q 011789 220 NADYVLCNTVHELESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAH---V 295 (477)
Q Consensus 220 ~~~~~l~~s~~~l~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~---~ 295 (477)
+.+++|+|+.+.++++ ++.+| +++|||+..+.....+++ +++.+|++.+ ++++|||||||+.. .
T Consensus 245 ~~~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~~~~~l~------~~l~~fl~~~-~~g~V~vS~GS~~~~~~~ 312 (507)
T PHA03392 245 RVQLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHKKPPQPLD------DYLEEFLNNS-TNGVVYVSFGSSIDTNDM 312 (507)
T ss_pred CCcEEEEecCccccCC-----CCCCCCeeeecccccCCCCCCCCC------HHHHHHHhcC-CCcEEEEECCCCCcCCCC
Confidence 7789999999999987 88888 999999987532222222 7889999986 45899999999853 5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHH
Q 011789 296 SKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEG 375 (477)
Q Consensus 296 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~ea 375 (477)
+.+.++.+++++++.+.++||++++... . ...++|+++.+|+||.+||+|+.+++||||||+||++||
T Consensus 313 ~~~~~~~~l~a~~~l~~~viw~~~~~~~-----~-------~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Ea 380 (507)
T PHA03392 313 DNEFLQMLLRTFKKLPYNVLWKYDGEVE-----A-------INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEA 380 (507)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCCcC-----c-------ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHH
Confidence 6788999999999999999999985421 1 123569999999999999999999999999999999999
Q ss_pred HhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011789 376 LWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 376 l~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 448 (477)
+++|||+|++|+++||+.||+|++++ |+|+.++ . +++.++|.++|+++|+|+ +|++||+++++.+++
T Consensus 381 l~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~--~~~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 381 IDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALD--TVTVSAAQLVLAIVDVIENP---KYRKNLKELRHLIRH 448 (507)
T ss_pred HHcCCCEEECCCCccHHHHHHHHHHc-CcEEEec--cCCcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999994 3 889999999999999999 999999999999998
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.2e-51 Score=423.82 Aligned_cols=390 Identities=22% Similarity=0.316 Sum_probs=226.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCC--C
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF--D 87 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 87 (477)
||+++|. +.||+.++..|+++|++|||+||++++......-..+.. .+++..++.+.+... +
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 65 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPS---------------NIRFETYPDPYPEEEFEE 65 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S----------------CCEEEE-----TT----
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccccccc---------------ceeeEEEcCCcchHHHhh
Confidence 6888885 789999999999999999999999987543221122222 566666665443221 1
Q ss_pred CCCc-HHHHHH---------HHHHHh---HHHH----------HHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCce
Q 011789 88 RSLN-HEQFMS---------SLLHVF---SAHA----------EEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYY 144 (477)
Q Consensus 88 ~~~~-~~~~~~---------~~~~~~---~~~~----------~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~ 144 (477)
.... ....+. ...... .... ..+.+.+..+ ++|++|+|.+..|+..+|+.++||.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~ 143 (500)
T PF00201_consen 66 IFPEFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPV 143 (500)
T ss_dssp --TTHHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTH
T ss_pred hhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCe
Confidence 1111 111111 000100 0000 1122222222 7999999998889999999999999
Q ss_pred EEEecchhHHHHHHhhhhhhhhcCCcCCCCCC-CCcccccCCCCCCCCCCCcccc----ccC--CCchhHHHHHHHHhhh
Q 011789 145 ISFWTESALVFTLYYHLDLLTINGHFQCYDCR-EDTIDYIPGVKAINPKDTTSYL----QET--DTTSACHQIIFNSFQD 217 (477)
Q Consensus 145 v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~p~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~ 217 (477)
+.+.+..............+...+++|..... ++.+++..++.+........++ ... .........-....+.
T Consensus 144 i~~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
T PF00201_consen 144 IIISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFREL 223 (500)
T ss_dssp HHHHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHH
T ss_pred EEEecccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHH
Confidence 87644322111000000111122233322211 1122222222111000000000 000 0000000000001123
Q ss_pred ccCCcEEEEcchhhccHHHHHHHHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEeccccc-C
Q 011789 218 TRNADYVLCNTVHELESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAH-V 295 (477)
Q Consensus 218 ~~~~~~~l~~s~~~l~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~ 295 (477)
+.+.+++++|+.+.++.| +|..| ++++|++..++....+ +++.+|++...++++|||||||++. .
T Consensus 224 ~~~~~l~l~ns~~~ld~p-----rp~~p~v~~vGgl~~~~~~~l~--------~~~~~~~~~~~~~~vv~vsfGs~~~~~ 290 (500)
T PF00201_consen 224 LSNASLVLINSHPSLDFP-----RPLLPNVVEVGGLHIKPAKPLP--------EELWNFLDSSGKKGVVYVSFGSIVSSM 290 (500)
T ss_dssp HHHHHHCCSSTEEE---------HHHHCTSTTGCGC-S----TCH--------HHHHHHTSTTTTTEEEEEE-TSSSTT-
T ss_pred HHHHHHHhhhccccCcCC-----cchhhcccccCccccccccccc--------cccchhhhccCCCCEEEEecCcccchh
Confidence 345667888999988876 78888 9999999876554333 7888899986678999999999875 4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHH
Q 011789 296 SKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEG 375 (477)
Q Consensus 296 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~ea 375 (477)
+.+..+.++++|++.+.+|||++.+.. .. .+++|+++.+|+||.+||+|+++++||||||+||+.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~iW~~~~~~-----~~--------~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea 357 (500)
T PF00201_consen 291 PEEKLKEIAEAFENLPQRFIWKYEGEP-----PE--------NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEA 357 (500)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEETCSH-----GC--------HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcccccccccc-----cc--------cccceEEEeccccchhhhhcccceeeeeccccchhhhh
Confidence 444588899999999999999997531 11 23469999999999999999999999999999999999
Q ss_pred HhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011789 376 LWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYA 449 (477)
Q Consensus 376 l~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~ 449 (477)
+++|||||++|+++||+.||+++++. |+|+.++ . +++.++|.++|+++|+|+ +|++||+++++++++.
T Consensus 358 ~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~--~~~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 358 LYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLD--KNDLTEEELRAAIREVLENP---SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEG--GGC-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT--
T ss_pred hhccCCccCCCCcccCCccceEEEEE-eeEEEEE--ecCCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999 9999995 3 899999999999999999 9999999999999984
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.3e-43 Score=350.81 Aligned_cols=359 Identities=16% Similarity=0.234 Sum_probs=248.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC--CCC--
Q 011789 14 ISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG--FDR-- 88 (477)
Q Consensus 14 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-- 88 (477)
+.+|+.||++|+++||++|++|||+|+|++++.+.+.+ +. |+.|..++...... ...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------------------G~~~~~~~~~~~~~~~~~~~~ 62 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------------------GAEFVLYGSALPPPDNPPENT 62 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------------------CCEEEecCCcCcccccccccc
Confidence 46799999999999999999999999999999999998 66 67787777543221 000
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcC
Q 011789 89 SLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTING 168 (477)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (477)
..+....+..+.......+..+.+.+.. .+||+||+|.+++++..+|+++|||+|.+++.+... ..++. .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~----~ 132 (392)
T TIGR01426 63 EEEPIDIIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEE----M 132 (392)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccc----c
Confidence 0233444444444444445555544444 389999999988899999999999999886543211 00000 0
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHh------h--hccCCcEEEEcchhhccHHHHHHH
Q 011789 169 HFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSF------Q--DTRNADYVLCNTVHELESEAVTAL 240 (477)
Q Consensus 169 ~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~l~~s~~~l~~~~~~~~ 240 (477)
..|... .... ......+.... ..+.+.++..+.. . .....+..+..+.+.|+++
T Consensus 133 ~~~~~~------~~~~-~~~~~~~~~~~------~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~----- 194 (392)
T TIGR01426 133 VSPAGE------GSAE-EGAIAERGLAE------YVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA----- 194 (392)
T ss_pred ccccch------hhhh-hhccccchhHH------HHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----
Confidence 000000 0000 00000000000 0011111111100 0 0122233555555656553
Q ss_pred HccCC--EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEE
Q 011789 241 KAKIP--FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWIL 318 (477)
Q Consensus 241 ~~~~p--~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 318 (477)
.+.+| ++++||+...... ...|....+++++||||+||+.......+..+++++.+.+.+++|..
T Consensus 195 ~~~~~~~~~~~Gp~~~~~~~-------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 261 (392)
T TIGR01426 195 GETFDDSFTFVGPCIGDRKE-------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSV 261 (392)
T ss_pred ccccCCCeEEECCCCCCccc-------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 34444 9999998765321 12255555677899999999866566688899999999999999988
Q ss_pred cCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHH
Q 011789 319 RPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLA 398 (477)
Q Consensus 319 ~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 398 (477)
+.... .+. .+..++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++
T Consensus 262 g~~~~--------~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l 330 (392)
T TIGR01426 262 GRGVD--------PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI 330 (392)
T ss_pred CCCCC--------hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH
Confidence 75421 011 1224579999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011789 399 VDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 399 ~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 448 (477)
++. |+|+.+. . +++.++|.++|+++|+|+ +|+++++++++++..
T Consensus 331 ~~~-g~g~~l~--~~~~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 331 AEL-GLGRHLP--PEEVTAEKLREAVLAVLSDP---RYAERLRKMRAEIRE 375 (392)
T ss_pred HHC-CCEEEec--cccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHH
Confidence 999 9999994 3 889999999999999999 999999999999997
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.5e-43 Score=355.14 Aligned_cols=363 Identities=13% Similarity=0.092 Sum_probs=241.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC--
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG-- 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 85 (477)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+ .. |++|..+++.....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~------------------G~~~~~~~~~~~~~~~ 62 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA------------------GLEFVPVGGDPDELLA 62 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc------------------CCceeeCCCCHHHHHh
Confidence 7999999999999999999999999999999999999998888 66 67787777532211
Q ss_pred -CC--------CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHH
Q 011789 86 -FD--------RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFT 156 (477)
Q Consensus 86 -~~--------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~ 156 (477)
.. ...........+.......++.+++.+.+ .+||+||+|.+++++..+|+++|||++.+++++.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 140 (401)
T cd03784 63 SPERNAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS 140 (401)
T ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc
Confidence 00 01111223333444445555555555443 39999999998889999999999999999776432110
Q ss_pred HHhhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHH---HHHHhhhcc------CCcEEEEc
Q 011789 157 LYYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQI---IFNSFQDTR------NADYVLCN 227 (477)
Q Consensus 157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~l~~ 227 (477)
. ..|-. ..........+........+... ..+....-. ..+..+..
T Consensus 141 -----------~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 195 (401)
T cd03784 141 -----------A-------------FPPPL-GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYG 195 (401)
T ss_pred -----------c-------------CCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEe
Confidence 0 00000 00000000000000000001111 111111100 11122222
Q ss_pred chhhccHHHHHHHHccCC--EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccC-CHHHHHHHH
Q 011789 228 TVHELESEAVTALKAKIP--FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHV-SKRDLIEIA 304 (477)
Q Consensus 228 s~~~l~~~~~~~~~~~~p--~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~-~~~~~~~~~ 304 (477)
..+.+.++ ++.+| ..++|+.......... .+.++..|++. .+++||||+||+... ....+..++
T Consensus 196 ~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~ 262 (401)
T cd03784 196 FSPAVLPP-----PPDWPRFDLVTGYGFRDVPYNGP------PPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDV 262 (401)
T ss_pred cCcccCCC-----CCCccccCcEeCCCCCCCCCCCC------CCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHH
Confidence 22222221 23344 6666543332221111 01566677765 467999999999753 456778899
Q ss_pred HHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceec
Q 011789 305 NGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLC 384 (477)
Q Consensus 305 ~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 384 (477)
++++..+.++||.++.... .. ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|+
T Consensus 263 ~a~~~~~~~~i~~~g~~~~---~~--------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~ 329 (401)
T cd03784 263 EAVATLGQRAILSLGWGGL---GA--------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLV 329 (401)
T ss_pred HHHHHcCCeEEEEccCccc---cc--------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEe
Confidence 9999999999999886532 11 123569999999999999999998 9999999999999999999999
Q ss_pred cccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011789 385 FPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 385 ~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 448 (477)
+|+..||+.||+++++. |+|+.+..+ +++.++|.++++++|+++ ++++++++++.+++
T Consensus 330 ~P~~~dQ~~~a~~~~~~-G~g~~l~~~-~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~ 387 (401)
T cd03784 330 VPFFGDQPFWAARVAEL-GAGPALDPR-ELTAERLAAALRRLLDPP----SRRRAAALLRRIRE 387 (401)
T ss_pred eCCCCCcHHHHHHHHHC-CCCCCCCcc-cCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh
Confidence 99999999999999999 999999411 789999999999999865 66677777777764
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-41 Score=332.00 Aligned_cols=389 Identities=17% Similarity=0.229 Sum_probs=244.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC-
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG- 85 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 85 (477)
||||+|+..|+.||++|+++|+++|.++||+|+|++++.+.+.+ +. ++.|..++......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a------------------g~~f~~~~~~~~~~~ 62 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA------------------GLAFVAYPIRDSELA 62 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh------------------CcceeeccccCChhh
Confidence 69999999999999999999999999999999999999999999 77 44444444321111
Q ss_pred -CCCCCc-HHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhh
Q 011789 86 -FDRSLN-HEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDL 163 (477)
Q Consensus 86 -~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~ 163 (477)
.+...+ ...+.. .+........++++-+.+. .+|+++.|.....+ .+++..++|++..............
T Consensus 63 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (406)
T COG1819 63 TEDGKFAGVKSFRR-LLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG---- 134 (406)
T ss_pred hhhhhhhccchhHH-HhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc----
Confidence 111111 111111 1122222333444444443 89999999655544 8999999999886433221110000
Q ss_pred hhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHh--hhccCCcEEEEcchhhccHHHHHHHH
Q 011789 164 LTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSF--QDTRNADYVLCNTVHELESEAVTALK 241 (477)
Q Consensus 164 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~s~~~l~~~~~~~~~ 241 (477)
...++............+ ++. +...+... ..........+... ....+.-..+..+-+.++....+...
T Consensus 135 ---~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (406)
T COG1819 135 ---LPLPPVGIAGKLPIPLYP-LPP---RLVRPLIF--ARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLF 205 (406)
T ss_pred ---cCcccccccccccccccc-cCh---hhcccccc--chhhhhhhhhhhhccccccccchHHHhcCCCCcccccccccc
Confidence 000000000000000000 000 00000000 00000000000000 00000000011111111111111000
Q ss_pred ---ccCC--EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEE
Q 011789 242 ---AKIP--FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIW 316 (477)
Q Consensus 242 ---~~~p--~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 316 (477)
...| ..++||+..... .++..|+. .++++||+|+||.... .++++.+++++...+.++|+
T Consensus 206 ~~~~~~p~~~~~~~~~~~~~~------------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~ 270 (406)
T COG1819 206 PPGDRLPFIGPYIGPLLGEAA------------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIV 270 (406)
T ss_pred CCCCCCCCCcCcccccccccc------------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEE
Confidence 1234 666777776544 33333422 3568999999999865 88899999999999999999
Q ss_pred EEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHH
Q 011789 317 ILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRK 396 (477)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 396 (477)
.+++. . .+...+ ++|+++..|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.
T Consensus 271 ~~~~~-~--~~~~~~--------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~ 337 (406)
T COG1819 271 SLGGA-R--DTLVNV--------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAE 337 (406)
T ss_pred ecccc-c--cccccC--------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHH
Confidence 98762 1 122334 469999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 011789 397 LAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 397 ~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
|++++ |+|+.+..+ .++.+.|+++|+++|+|+ .|++++++++++++.. +| .+.+.+.++++.+
T Consensus 338 rve~~-G~G~~l~~~-~l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~ 400 (406)
T COG1819 338 RVEEL-GAGIALPFE-ELTEERLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAADLLEEFAR 400 (406)
T ss_pred HHHHc-CCceecCcc-cCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHh
Confidence 99999 999999311 899999999999999999 9999999999999974 44 5667777776543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.4e-41 Score=347.48 Aligned_cols=407 Identities=27% Similarity=0.457 Sum_probs=256.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCC-CCeEEEecCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSG-LDIRYMTLSDGLPLG 85 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 85 (477)
..+++++++|++||++|++.||+.|+++||+||++++....... .. .. .. .. ..+. ..+.+...+++++..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~-~~--~~---~~~~~~~~~~~~~~~~~~~~ 77 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK-SK--SI---KKINPPPFEFLTIPDGLPEG 77 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc-ce--ee---eeeecChHHhhhhhhhhccc
Confidence 46888999999999999999999999999999999998877655 21 11 00 00 0000 011121111222222
Q ss_pred CCCC-CcHHHHHHHHHHHhHHHHHHHHHHhHhcC-CCccEEEecCCCcchHHHHHHhC-CceEEEecchhHHHHHHhhhh
Q 011789 86 FDRS-LNHEQFMSSLLHVFSAHAEEVIGQIVRSG-ENVHCLIADTYFVWPSKLAKKFG-LYYISFWTESALVFTLYYHLD 162 (477)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~pD~iI~D~~~~~~~~~A~~~g-IP~v~~~~~~~~~~~~~~~~~ 162 (477)
.... .........+...+...+......+.... .++|++|+|.+..+...++.... |+..++++.++.........+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 78 WEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 1111 01111133444455555555444433221 23999999997667777777765 888888777766544322111
Q ss_pred hhhhcCCcCCCCCC-C-CcccccCCCCCCCCCCCccccccCCCc---hhHH-HHH-------HHHhhhccCCcEEEEcch
Q 011789 163 LLTINGHFQCYDCR-E-DTIDYIPGVKAINPKDTTSYLQETDTT---SACH-QII-------FNSFQDTRNADYVLCNTV 229 (477)
Q Consensus 163 ~~~~~~~~p~~~~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~-~~~-------~~~~~~~~~~~~~l~~s~ 229 (477)
..+.|..... . +.........+................ .... ... ....+...+.++.++|+.
T Consensus 158 ----~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~ 233 (496)
T KOG1192|consen 158 ----LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSN 233 (496)
T ss_pred ----ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccC
Confidence 1122222111 0 000110000000000000000000000 0000 000 011133455567777777
Q ss_pred hhccHHHHHHHHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCC--cEEEEEecccc---cCCHHHHHHH
Q 011789 230 HELESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKG--SVLYVSFGSYA---HVSKRDLIEI 303 (477)
Q Consensus 230 ~~l~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~I~vs~Gs~~---~~~~~~~~~~ 303 (477)
+.++.. +++..| +++|||+......... ....+|++..++. ++|||||||++ .++.+....+
T Consensus 234 ~~~~~~----~~~~~~~v~~IG~l~~~~~~~~~--------~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l 301 (496)
T KOG1192|consen 234 PLLDFE----PRPLLPKVIPIGPLHVKDSKQKS--------PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKEL 301 (496)
T ss_pred cccCCC----CCCCCCCceEECcEEecCccccc--------cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHH
Confidence 766652 144457 9999999987432111 2456677766554 89999999998 7899999999
Q ss_pred HHHHHhC-CCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHh-hccCCCCccccccCCchhhHHHhcCcc
Q 011789 304 ANGIAKS-KVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSV-LAHPAIGGFLTHCGWNSVLEGLWCGVP 381 (477)
Q Consensus 304 ~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~l-L~~~~~~~~ItHgG~gs~~eal~~GvP 381 (477)
+.+++.. ++.|+|++..... ..+++++.++.++||...+|+||.++ |.|+++++|||||||||++|++++|||
T Consensus 302 ~~~l~~~~~~~FiW~~~~~~~-----~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP 376 (496)
T KOG1192|consen 302 AKALESLQGVTFLWKYRPDDS-----IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVP 376 (496)
T ss_pred HHHHHhCCCceEEEEecCCcc-----hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCc
Confidence 9999999 8889999986521 11333333222357888899999998 699999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011789 382 LLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 382 ~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 448 (477)
||++|+++||+.||+++++. |.|..++ + +++.+.+..++.++++++ +|+++++++++.+++
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~-g~~~v~~--~~~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRH-GGGGVLD--KRDLVSEELLEAIKEILENE---EYKEAAKRLSEILRD 438 (496)
T ss_pred eecCCccccchhHHHHHHhC-CCEEEEe--hhhcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc
Confidence 99999999999999999999 5555553 5 666666999999999999 999999999999886
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=3.1e-25 Score=217.74 Aligned_cols=308 Identities=18% Similarity=0.193 Sum_probs=198.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh---ccCCCCCCccccccccCCCCCeEEEecCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM---TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPL 84 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (477)
|.||+|.+.|+.||++|.++||++|.++||+|+|+++....+.- .. ++.+..++..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~------------------g~~~~~~~~~--- 59 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE------------------NIPYYSISSG--- 59 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc------------------CCcEEEEecc---
Confidence 67899999999999999999999999999999999976654331 11 5777777632
Q ss_pred CCCCCCcHHHHHHHHHHHhHHH--HHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEecchhHHHHHHhh
Q 011789 85 GFDRSLNHEQFMSSLLHVFSAH--AEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWTESALVFTLYYH 160 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~~~~~~~~~~ 160 (477)
+......+ ..+.......... ...++.+. +||+||+...+. .+..+|+.+++|++....
T Consensus 60 ~l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~-----kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~----------- 122 (352)
T PRK12446 60 KLRRYFDL-KNIKDPFLVMKGVMDAYVRIRKL-----KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES----------- 122 (352)
T ss_pred CcCCCchH-HHHHHHHHHHHHHHHHHHHHHhc-----CCCEEEecCchhhHHHHHHHHHcCCCEEEECC-----------
Confidence 11111111 1222222222222 22334444 999999876444 478899999999988611
Q ss_pred hhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHH
Q 011789 161 LDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTAL 240 (477)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 240 (477)
..+|++. .+.+. +.++.++ .++++-.
T Consensus 123 --------------------n~~~g~~--------------------nr~~~------~~a~~v~-~~f~~~~------- 148 (352)
T PRK12446 123 --------------------DMTPGLA--------------------NKIAL------RFASKIF-VTFEEAA------- 148 (352)
T ss_pred --------------------CCCccHH--------------------HHHHH------HhhCEEE-EEccchh-------
Confidence 1222221 11111 2223332 2332211
Q ss_pred HccC-C-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCH-HHHHHHHHHHHhCCCeEEEE
Q 011789 241 KAKI-P-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSK-RDLIEIANGIAKSKVTFIWI 317 (477)
Q Consensus 241 ~~~~-p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~ 317 (477)
.... . +..+|+...+...... . ++..+.+.-.+++++|+|..||...... +.+..++..+. .+.+++|.
T Consensus 149 ~~~~~~k~~~tG~Pvr~~~~~~~-----~--~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~ 220 (352)
T PRK12446 149 KHLPKEKVIYTGSPVREEVLKGN-----R--EKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHL 220 (352)
T ss_pred hhCCCCCeEEECCcCCccccccc-----c--hHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEE
Confidence 0111 2 7889988766432111 0 1111223333456799999999975333 22344444443 24788998
Q ss_pred EcCCCCCCCCCCCCchhHHHhcCCCeEEEeec-cHH-HhhccCCCCccccccCCchhhHHHhcCcceeccccc-----cc
Q 011789 318 LRPDIVSSDDPNPLPEDFKKEVADRSMIITWC-CQT-SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY-----TD 390 (477)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~-p~~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~-----~D 390 (477)
++.+.. +...+.. .++.+.+|+ ++. ++|+++++ +|||||.+|+.|++++|+|+|++|+. .|
T Consensus 221 ~G~~~~---------~~~~~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~ 288 (352)
T PRK12446 221 CGKGNL---------DDSLQNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGD 288 (352)
T ss_pred eCCchH---------HHHHhhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCch
Confidence 886521 1111111 355667887 544 69999998 99999999999999999999999984 48
Q ss_pred hhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCC
Q 011789 391 QFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 391 Q~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~ 430 (477)
|..||+.+++. |+|..+. . +++++.|.+++.++++|+
T Consensus 289 Q~~Na~~l~~~-g~~~~l~--~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 289 QILNAESFERQ-GYASVLY--EEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHHHHHHHHHC-CCEEEcc--hhcCCHHHHHHHHHHHHcCH
Confidence 99999999999 9999984 3 889999999999999875
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.6e-24 Score=211.37 Aligned_cols=304 Identities=16% Similarity=0.179 Sum_probs=192.8
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 9 PHAIFISYP-LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 9 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
|||+|...+ |.||+.+.+.|+++| |||+|+|++.....+.+.. .+.+..++.-......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 60 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP------------------RFPVREIPGLGPIQEN 60 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc------------------ccCEEEccCceEeccC
Confidence 799998888 999999999999999 6999999998877655532 2234444321111111
Q ss_pred CCCcHHHHHHHH---HHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 011789 88 RSLNHEQFMSSL---LHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLL 164 (477)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~ 164 (477)
...+........ .......++.+.+.+.+. +||+||+|. .+.+..+|+..|||++.+........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~--------- 128 (318)
T PF13528_consen 61 GRLDRWKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH--------- 128 (318)
T ss_pred CccchHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc---------
Confidence 111111111111 122334445555555553 999999995 55577899999999999855432110
Q ss_pred hhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhh--hccCCcEEEEcchhhccHHHHHHHHc
Q 011789 165 TINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQ--DTRNADYVLCNTVHELESEAVTALKA 242 (477)
Q Consensus 165 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~l~~~~~~~~~~ 242 (477)
+... ... ......++.+... ....++..+..+++ .. ..
T Consensus 129 -------------------~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-------~~ 168 (318)
T PF13528_consen 129 -------------------PNFW-LPW------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP-------LP 168 (318)
T ss_pred -------------------ccCC-cch------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc-------cc
Confidence 0000 000 0011122222111 12344444444433 11 11
Q ss_pred cCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC-CeEEEEEcC
Q 011789 243 KIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK-VTFIWILRP 320 (477)
Q Consensus 243 ~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~ 320 (477)
..- ...+||+..++..... ..+++.|+|++|+.... .++++++..+ ..+++. +.
T Consensus 169 ~~~~~~~~~p~~~~~~~~~~-----------------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~ 224 (318)
T PF13528_consen 169 PFFRVPFVGPIIRPEIRELP-----------------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GP 224 (318)
T ss_pred ccccccccCchhcccccccC-----------------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cC
Confidence 111 5668887765432110 12446899999988532 5566777766 566555 44
Q ss_pred CCCCCCCCCCCchhHHHhcCCCeEEEeec--cHHHhhccCCCCccccccCCchhhHHHhcCcceecccc--ccchhhHHH
Q 011789 321 DIVSSDDPNPLPEDFKKEVADRSMIITWC--CQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL--YTDQFTNRK 396 (477)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~nv~v~~~~--p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~ 396 (477)
... . ...+|+.+.++. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..+|..||+
T Consensus 225 ~~~-------~------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~ 289 (318)
T PF13528_consen 225 NAA-------D------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNAR 289 (318)
T ss_pred Ccc-------c------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 310 0 114699999876 44569999998 9999999999999999999999999 789999999
Q ss_pred HHHhhhcceeeecCCC-CcCHHHHHHHHHHH
Q 011789 397 LAVDDWNVGLNLSNEK-VITKEEVSKNVHLL 426 (477)
Q Consensus 397 ~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~ 426 (477)
++++. |+|+.+. . ++++++|+++|+++
T Consensus 290 ~l~~~-G~~~~~~--~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 290 KLEEL-GLGIVLS--QEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHC-CCeEEcc--cccCCHHHHHHHHhcC
Confidence 99999 9999993 2 89999999998764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.6e-21 Score=187.79 Aligned_cols=310 Identities=18% Similarity=0.187 Sum_probs=195.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGF-TITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF 86 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (477)
|+|++...++.||+.|.++|+++|.++|+ +|.++.+....+.. .... ++.+..++.+...+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~----------------~~~~~~I~~~~~~~~ 64 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY----------------GIEFELIPSGGLRRK 64 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecccc----------------CceEEEEeccccccc
Confidence 58899999999999999999999999999 57777665555443 2211 567777774433221
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWTESALVFTLYYHLDLL 164 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~ 164 (477)
.....+...+..+. ...+...++.+. +||+||.-..+. .+..+|..+|||.+..
T Consensus 65 ~~~~~~~~~~~~~~--~~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih----------------- 120 (357)
T COG0707 65 GSLKLLKAPFKLLK--GVLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIH----------------- 120 (357)
T ss_pred CcHHHHHHHHHHHH--HHHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEE-----------------
Confidence 11112222222221 122345566665 999999854433 7788999999999997
Q ss_pred hhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccC
Q 011789 165 TINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKI 244 (477)
Q Consensus 165 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 244 (477)
+.+..||..+ +++. +.++.+. .+++..+. -..
T Consensus 121 --------------Eqn~~~G~an--------------------k~~~------~~a~~V~-~~f~~~~~-------~~~ 152 (357)
T COG0707 121 --------------EQNAVPGLAN--------------------KILS------KFAKKVA-SAFPKLEA-------GVK 152 (357)
T ss_pred --------------ecCCCcchhH--------------------HHhH------Hhhceee-eccccccc-------cCC
Confidence 1245555432 1111 1222222 22221110 011
Q ss_pred C--EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCH-HHHHHHHHHHHhCCCeEEEEEcCC
Q 011789 245 P--FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSK-RDLIEIANGIAKSKVTFIWILRPD 321 (477)
Q Consensus 245 p--~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~ 321 (477)
+ +..+|-....+-...+ ..-..+... .++++|+|+.||.....- +.+..+...+.. ...++..++.+
T Consensus 153 ~~~~~~tG~Pvr~~~~~~~--------~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~ 222 (357)
T COG0707 153 PENVVVTGIPVRPEFEELP--------AAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN 222 (357)
T ss_pred CCceEEecCcccHHhhccc--------hhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc
Confidence 1 5666655444322111 001111111 156799999999864221 123333333333 46777777755
Q ss_pred CCCCCCCCCCchhHHHhcC-CC-eEEEeeccHHH-hhccCCCCccccccCCchhhHHHhcCcceeccccc----cchhhH
Q 011789 322 IVSSDDPNPLPEDFKKEVA-DR-SMIITWCCQTS-VLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY----TDQFTN 394 (477)
Q Consensus 322 ~~~~~~~~~lp~~~~~~~~-~n-v~v~~~~p~~~-lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~----~DQ~~n 394 (477)
. -+.....+. .+ +.+.+|..++. +|+.+++ +||++|.+|+.|++++|+|+|.+|+- .||..|
T Consensus 223 ~---------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 223 D---------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred h---------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 1 122222222 23 77788988775 9999998 99999999999999999999999983 389999
Q ss_pred HHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCC
Q 011789 395 RKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 395 a~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~ 430 (477)
|..+++. |.|..+. + +++.++|.+.|.++++++
T Consensus 292 A~~l~~~-gaa~~i~--~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 292 AKFLEKA-GAALVIR--QSELTPEKLAELILRLLSNP 325 (357)
T ss_pred HHHHHhC-CCEEEec--cccCCHHHHHHHHHHHhcCH
Confidence 9999999 9999994 4 899999999999999876
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=9.5e-22 Score=191.68 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=90.3
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHHhCCC-eEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeecc--HHHhhccC
Q 011789 282 GSVLYVSFGSYAHVSKRDLIEIANGIAKSKV-TFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCC--QTSVLAHP 358 (477)
Q Consensus 282 ~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p--~~~lL~~~ 358 (477)
++.|+|.+|+... ..+++++++.+. .++ +.... ...+ .+++|+.+.+|.| ..++|+.+
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~~~~-------~~~~----~~~~~v~~~~~~~~~~~~~l~~a 248 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIANVKFV--CYSYE-------VAKN----SYNENVEIRRITTDNFKELIKNA 248 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCCeEEE--EeCCC-------CCcc----ccCCCEEEEECChHHHHHHHHhC
Confidence 4568888887532 345667766654 333 22221 0111 2346999999997 44688999
Q ss_pred CCCccccccCCchhhHHHhcCcceecccccc--chhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 359 AIGGFLTHCGWNSVLEGLWCGVPLLCFPLYT--DQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 359 ~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
++ +|||||.+|++|++++|+|++++|... ||..||+.+++. |+|+.+..+ ++ ++.+++.++++|+
T Consensus 249 d~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~-~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 249 EL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK-EL---RLLEAILDIRNMK 315 (321)
T ss_pred CE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh-hH---HHHHHHHhccccc
Confidence 98 999999999999999999999999854 899999999999 999999311 43 6677777788887
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=4.9e-19 Score=175.61 Aligned_cols=342 Identities=14% Similarity=0.139 Sum_probs=197.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
||||+|+..+..||...++.|+++|.++||+|++++.+........... ++++..++..-..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~---------------g~~~~~~~~~~~~--- 62 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKA---------------GIEFHFIPSGGLR--- 62 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccC---------------CCcEEEEeccCcC---
Confidence 7999999999899999999999999999999999998653211110001 5666666532110
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCC--CcchHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTY--FVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
..+....+..... ....+..+.+.+.+. +||+|++... ...+..+++..++|++....
T Consensus 63 -~~~~~~~l~~~~~-~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~---------------- 122 (357)
T PRK00726 63 -RKGSLANLKAPFK-LLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQ---------------- 122 (357)
T ss_pred -CCChHHHHHHHHH-HHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcC----------------
Confidence 1111111111111 112222333333332 8999999963 22455667888999986410
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccC-
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKI- 244 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~- 244 (477)
...++ ...+++. ..++.+++.+...+. . ..
T Consensus 123 ---------------~~~~~--------------------~~~r~~~------~~~d~ii~~~~~~~~-------~-~~~ 153 (357)
T PRK00726 123 ---------------NAVPG--------------------LANKLLA------RFAKKVATAFPGAFP-------E-FFK 153 (357)
T ss_pred ---------------CCCcc--------------------HHHHHHH------HHhchheECchhhhh-------c-cCC
Confidence 00010 0111111 233444433321110 1 12
Q ss_pred C-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCC--eEEEEEcCC
Q 011789 245 P-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKV--TFIWILRPD 321 (477)
Q Consensus 245 p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~ 321 (477)
. +..+|+....+..... . ..+-+...++.++|++..|+... ......+.+++++... .+++.++..
T Consensus 154 ~~i~vi~n~v~~~~~~~~--------~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g 222 (357)
T PRK00726 154 PKAVVTGNPVREEILALA--------A-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG 222 (357)
T ss_pred CCEEEECCCCChHhhccc--------c-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC
Confidence 2 7777766543221000 0 00011222234466665555421 1122333355554332 445555544
Q ss_pred CCCCCCCCCCchhHHHh--cCCCeEEEeecc-HHHhhccCCCCccccccCCchhhHHHhcCcceecccc----ccchhhH
Q 011789 322 IVSSDDPNPLPEDFKKE--VADRSMIITWCC-QTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL----YTDQFTN 394 (477)
Q Consensus 322 ~~~~~~~~~lp~~~~~~--~~~nv~v~~~~p-~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~n 394 (477)
. . +...+. ..-++.+.+|+. ..++|+.+++ +|+|+|.+++.||+++|+|+|++|. ..+|..|
T Consensus 223 ~--------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 291 (357)
T PRK00726 223 D--------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTAN 291 (357)
T ss_pred c--------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHH
Confidence 1 1 222222 222477788984 4579999998 9999999999999999999999997 3689999
Q ss_pred HHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 395 RKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 395 a~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
+..+.+. |.|..+..+ +++++.|.++|.++++|+ +++++..+-++++.+ ..+....++.+.+.+
T Consensus 292 ~~~i~~~-~~g~~~~~~-~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 292 ARALVDA-GAALLIPQS-DLTPEKLAEKLLELLSDP---ERLEAMAEAARALGK----PDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHC-CCEEEEEcc-cCCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcCC----cCHHHHHHHHHHHHh
Confidence 9999999 999999411 678999999999999998 777666555554432 344444444444433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=2.1e-17 Score=163.47 Aligned_cols=320 Identities=15% Similarity=0.151 Sum_probs=185.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRS 89 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (477)
+|+|...+..||....+.|++.|.++||+|++++.......-..... ++++..++..-..+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~---- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKA---------------GIPLHTIPVGGLRR---- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhccccc---------------CCceEEEEecCcCC----
Confidence 58899999999999999999999999999999987643211100001 45666555321111
Q ss_pred CcHHHHHHHHHH--HhHHHHHHHHHHhHhcCCCccEEEecCCC--cchHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 90 LNHEQFMSSLLH--VFSAHAEEVIGQIVRSGENVHCLIADTYF--VWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 90 ~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~pD~iI~D~~~--~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
......+..... .....+..++++. +||+|++.... ..+..+|+..|+|++....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~---------------- 120 (350)
T cd03785 62 KGSLKKLKAPFKLLKGVLQARKILKKF-----KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ---------------- 120 (350)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhc-----CCCEEEECCCCcchHHHHHHHHhCCCEEEEcC----------------
Confidence 111111111111 1112233444433 99999987533 3456778999999986310
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccCC
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKIP 245 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~p 245 (477)
...++ ...+++. ..++.+++.+....+. ..+
T Consensus 121 ---------------~~~~~--------------------~~~~~~~------~~~~~vi~~s~~~~~~--------~~~ 151 (350)
T cd03785 121 ---------------NAVPG--------------------LANRLLA------RFADRVALSFPETAKY--------FPK 151 (350)
T ss_pred ---------------CCCcc--------------------HHHHHHH------HhhCEEEEcchhhhhc--------CCC
Confidence 00010 0011111 2356666554432221 122
Q ss_pred --EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCC-HHHHHHHHHHHHhCCCeEEEEEcCCC
Q 011789 246 --FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVS-KRDLIEIANGIAKSKVTFIWILRPDI 322 (477)
Q Consensus 246 --~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~ 322 (477)
+..+|........... .. .+.+...+++.+|++..|+..... .+.+..++..+...+..+++.++...
T Consensus 152 ~~~~~i~n~v~~~~~~~~--------~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~ 222 (350)
T cd03785 152 DKAVVTGNPVREEILALD--------RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD 222 (350)
T ss_pred CcEEEECCCCchHHhhhh--------hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc
Confidence 6677765433211000 11 112222233446666666653211 11222333444433445555665431
Q ss_pred CCCCCCCCCchhHHHhcCCCeEEEeec-cHHHhhccCCCCccccccCCchhhHHHhcCcceecccc----ccchhhHHHH
Q 011789 323 VSSDDPNPLPEDFKKEVADRSMIITWC-CQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL----YTDQFTNRKL 397 (477)
Q Consensus 323 ~~~~~~~~lp~~~~~~~~~nv~v~~~~-p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~ 397 (477)
.+.+.+.. +...+|+.+.+|+ ...++|+.+++ +|+++|.+++.||+++|+|+|++|. ..+|..|+..
T Consensus 223 -----~~~l~~~~-~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 223 -----LEEVKKAY-EELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred -----HHHHHHHH-hccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 11121111 1123689999998 44569999998 9999999999999999999999986 3679999999
Q ss_pred HHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011789 398 AVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAAKQ 441 (477)
Q Consensus 398 v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~ 441 (477)
+.+. |.|..+. . +.+.++|.++|.++++|+ +.+++..+
T Consensus 295 l~~~-g~g~~v~--~~~~~~~~l~~~i~~ll~~~---~~~~~~~~ 333 (350)
T cd03785 295 LVKA-GAAVLIP--QEELTPERLAAALLELLSDP---ERLKAMAE 333 (350)
T ss_pred HHhC-CCEEEEe--cCCCCHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 9999 9999993 2 468999999999999887 55444333
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.76 E-value=4.5e-16 Score=144.13 Aligned_cols=331 Identities=16% Similarity=0.153 Sum_probs=200.3
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCC
Q 011789 6 TQKPHAIFISYP--LQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDG 81 (477)
Q Consensus 6 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (477)
.+++||+|+++- +.||+..++.+|++|++. |.+|++++...-..-. ....+++|+.+|.-
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F----------------~~~~gVd~V~LPsl 70 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF----------------PGPAGVDFVKLPSL 70 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC----------------CCcccCceEecCce
Confidence 456799999995 779999999999999998 9999999987655443 11128999999931
Q ss_pred ------CCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHH
Q 011789 82 ------LPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVF 155 (477)
Q Consensus 82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~ 155 (477)
.....+...+ ..++.+.-...+...++.+ +||++|+|.+-++.. -+.. | +
T Consensus 71 ~k~~~G~~~~~d~~~~----l~e~~~~Rs~lil~t~~~f-----kPDi~IVd~~P~Glr--~EL~--p-----------t 126 (400)
T COG4671 71 IKGDNGEYGLVDLDGD----LEETKKLRSQLILSTAETF-----KPDIFIVDKFPFGLR--FELL--P-----------T 126 (400)
T ss_pred EecCCCceeeeecCCC----HHHHHHHHHHHHHHHHHhc-----CCCEEEEeccccchh--hhhh--H-----------H
Confidence 1111122222 3333232233344444554 999999997665411 1110 0 0
Q ss_pred HHHhhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHH
Q 011789 156 TLYYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESE 235 (477)
Q Consensus 156 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 235 (477)
-.|..-. + +. .+-++ ...++.+......+......+-+. +-.|.+++...|.|..+
T Consensus 127 L~yl~~~-----~--t~---------~vL~l--r~i~D~p~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~ 182 (400)
T COG4671 127 LEYLKTT-----G--TR---------LVLGL--RSIRDIPQELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDP 182 (400)
T ss_pred HHHHhhc-----C--Cc---------ceeeh--HhhhhchhhhccchhhhHHHHHHH------HhheEEEEecCccccCh
Confidence 0000000 0 00 00000 011111111111122222222233 33466777777666533
Q ss_pred HHHH--HHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh-CC
Q 011789 236 AVTA--LKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK-SK 311 (477)
Q Consensus 236 ~~~~--~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~-~~ 311 (477)
...+ +..... +.++|.+... -...+.+ | . +.+++.-|+||-|.-.. ..+++...+.|-.. .+
T Consensus 183 ~~~~~~~~~i~~k~~ytG~vq~~-~~~~~~p---~--------~-~~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~ 248 (400)
T COG4671 183 LTEFPFAPAIRAKMRYTGFVQRS-LPHLPLP---P--------H-EAPEGFDILVSVGGGAD-GAELIETALAAAQLLAG 248 (400)
T ss_pred hhcCCccHhhhhheeEeEEeecc-CcCCCCC---C--------c-CCCccceEEEecCCChh-hHHHHHHHHHHhhhCCC
Confidence 2111 111123 8999999221 1111111 1 0 11455689999887652 45667777766544 44
Q ss_pred Ce--EEEEEcCCCCCCCCCCCCch----hHHHhcC--CCeEEEeeccHH-HhhccCCCCccccccCCchhhHHHhcCcce
Q 011789 312 VT--FIWILRPDIVSSDDPNPLPE----DFKKEVA--DRSMIITWCCQT-SVLAHPAIGGFLTHCGWNSVLEGLWCGVPL 382 (477)
Q Consensus 312 ~~--~i~~~~~~~~~~~~~~~lp~----~~~~~~~--~nv~v~~~~p~~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~ 382 (477)
.+ .++.++.. +|+ .+.+..+ +++.+..|..+. +++.-++. +|+-||+||++|-|.+|+|.
T Consensus 249 l~~~~~ivtGP~---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~a 317 (400)
T COG4671 249 LNHKWLIVTGPF---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPA 317 (400)
T ss_pred CCcceEEEeCCC---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCce
Confidence 44 44555543 554 3334444 789999997766 58888887 99999999999999999999
Q ss_pred eccccc---cchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhc
Q 011789 383 LCFPLY---TDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMG 428 (477)
Q Consensus 383 v~~P~~---~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~ 428 (477)
+++|.. -+|-.-|.|++++ |+--++- . ++++..|+++|...++
T Consensus 318 LivPr~~p~eEQliRA~Rl~~L-GL~dvL~--pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 318 LIVPRAAPREEQLIRAQRLEEL-GLVDVLL--PENLTPQNLADALKAALA 364 (400)
T ss_pred EEeccCCCcHHHHHHHHHHHhc-CcceeeC--cccCChHHHHHHHHhccc
Confidence 999985 4899999999999 9988883 3 9999999999999987
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=4.9e-15 Score=146.40 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=171.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh-hhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQ-QMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
|||+|++.+..||+...+.|+++|.++||+|++++.+.... .... . .++++..++-.-..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~-~---------------~g~~~~~i~~~~~~--- 61 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP-K---------------AGIEFYFIPVGGLR--- 61 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc-c---------------CCCceEEEeccCcC---
Confidence 59999999999999988899999999999999998644211 1100 0 15666666532111
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
...+...+...... ...+..+.+.+.+. +||+|++..... .+..+++..++|.+....
T Consensus 62 -~~~~~~~l~~~~~~-~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~---------------- 121 (348)
T TIGR01133 62 -RKGSFRLIKTPLKL-LKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ---------------- 121 (348)
T ss_pred -CCChHHHHHHHHHH-HHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECC----------------
Confidence 11122222221111 11122232333332 999999975433 345578888999874300
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccCC
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKIP 245 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~p 245 (477)
...++ ...+++. +.++.+++.+...-+ ...
T Consensus 122 ---------------~~~~~--------------------~~~~~~~------~~~d~ii~~~~~~~~---------~~~ 151 (348)
T TIGR01133 122 ---------------NAVPG--------------------LTNKLLS------RFAKKVLISFPGAKD---------HFE 151 (348)
T ss_pred ---------------CCCcc--------------------HHHHHHH------HHhCeeEECchhHhh---------cCC
Confidence 00000 0112222 334555544322111 011
Q ss_pred EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHH---HHhCCCeEEEEEcCCC
Q 011789 246 FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANG---IAKSKVTFIWILRPDI 322 (477)
Q Consensus 246 ~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a---l~~~~~~~i~~~~~~~ 322 (477)
...+|..........+ .. .+.+...+++.+|.+..|+... ......+.++ +...+..+++..++.
T Consensus 152 ~~~i~n~v~~~~~~~~--------~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~- 219 (348)
T TIGR01133 152 AVLVGNPVRQEIRSLP--------VP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN- 219 (348)
T ss_pred ceEEcCCcCHHHhccc--------ch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc-
Confidence 2334433221110000 00 0122222233455444445432 1212222233 333445565544432
Q ss_pred CCCCCCCCCchhHHHhcCC-C-eEEEeec--cHHHhhccCCCCccccccCCchhhHHHhcCcceeccccc---cchhhHH
Q 011789 323 VSSDDPNPLPEDFKKEVAD-R-SMIITWC--CQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY---TDQFTNR 395 (477)
Q Consensus 323 ~~~~~~~~lp~~~~~~~~~-n-v~v~~~~--p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~---~DQ~~na 395 (477)
.. +.+++...+ + ..++.+. ...++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+
T Consensus 220 -------~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 220 -------DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred -------hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 11 222222221 1 1233333 45579999998 99999988999999999999999863 4788899
Q ss_pred HHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHHHH
Q 011789 396 KLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRNAA 439 (477)
Q Consensus 396 ~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~a 439 (477)
..+++. |.|..+. . +.+.+.|.+++.++++|+ +++++.
T Consensus 290 ~~i~~~-~~G~~~~--~~~~~~~~l~~~i~~ll~~~---~~~~~~ 328 (348)
T TIGR01133 290 KFLEDL-GAGLVIR--QKELLPEKLLEALLKLLLDP---ANLEAM 328 (348)
T ss_pred HHHHHC-CCEEEEe--cccCCHHHHHHHHHHHHcCH---HHHHHH
Confidence 999999 9999883 2 568999999999999988 555433
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=4.9e-16 Score=154.85 Aligned_cols=345 Identities=14% Similarity=0.097 Sum_probs=192.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
.||+|...++.||++|. +|+++|.++|++|+|++.... .+ ..|.+ . .+++..++-
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----------~---~~~~~~l~v------- 61 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----------V---LYSMEELSV------- 61 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----------c---ccChHHhhh-------
Confidence 47899999999999999 999999999999999986643 23 44332 0 233333321
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEe-cCCCcchHH--HHHHhCCceEEEecchhHHHHHHhhhhhh
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIA-DTYFVWPSK--LAKKFGLYYISFWTESALVFTLYYHLDLL 164 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~-D~~~~~~~~--~A~~~gIP~v~~~~~~~~~~~~~~~~~~~ 164 (477)
..+.+.+..+ ......+....+.+.+. +||+||. |...+.... .|+.+|||++.+.+.
T Consensus 62 --~G~~~~l~~~-~~~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-------------- 122 (385)
T TIGR00215 62 --MGLREVLGRL-GRLLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-------------- 122 (385)
T ss_pred --ccHHHHHHHH-HHHHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC--------------
Confidence 1111222222 11122222333334443 9999996 532323233 889999999876321
Q ss_pred hhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccC
Q 011789 165 TINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKI 244 (477)
Q Consensus 165 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 244 (477)
..+.++. .+ .+.+. +.++.+++... .+...+. +...
T Consensus 123 --------------------~~waw~~----------~~----~r~l~------~~~d~v~~~~~--~e~~~~~--~~g~ 158 (385)
T TIGR00215 123 --------------------QVWAWRK----------WR----AKKIE------KATDFLLAILP--FEKAFYQ--KKNV 158 (385)
T ss_pred --------------------cHhhcCc----------ch----HHHHH------HHHhHhhccCC--CcHHHHH--hcCC
Confidence 0101110 00 11111 22333332221 2222111 1112
Q ss_pred CEEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhC-----CCeEEEEEc
Q 011789 245 PFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKS-----KVTFIWILR 319 (477)
Q Consensus 245 p~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 319 (477)
+..++|....+...... ....+..+-+.-.+++++|.+..||....-......++++++.. +.++++...
T Consensus 159 ~~~~vGnPv~~~~~~~~-----~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 159 PCRFVGHPLLDAIPLYK-----PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred CEEEECCchhhhccccC-----CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 35568865543221000 00022222223333556888888887532233445555544332 334555433
Q ss_pred CCCCCCCCCCCCchhHHHhcC--CCeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceecc----cccc----
Q 011789 320 PDIVSSDDPNPLPEDFKKEVA--DRSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCF----PLYT---- 389 (477)
Q Consensus 320 ~~~~~~~~~~~lp~~~~~~~~--~nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~----P~~~---- 389 (477)
.... ...+ +.+.+... ..+.+..+ ....+|+.+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 234 ~~~~----~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~ 304 (385)
T TIGR00215 234 NFKR----RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIAR 304 (385)
T ss_pred Cchh----HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHH
Confidence 2210 0001 11222222 23333322 33459999998 9999999988 999999999999 8642
Q ss_pred -----chhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCC----ch-HHHHHHHHHHHHHHHHHhcCCCchHH
Q 011789 390 -----DQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEK----SG-AKYRNAAKQVKKAMEYALQPNGSSDK 458 (477)
Q Consensus 390 -----DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~----~~-~~~~~~a~~l~~~~~~~~~~gg~~~~ 458 (477)
+|..|+..+... ++...+. . +++++.|.+.+.++|+|+ +. +.+++...++.+++. ++|.+..
T Consensus 305 ~~~~~~~~~~~nil~~~-~~~pel~--q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~ 377 (385)
T TIGR00215 305 RLVKTDYISLPNILANR-LLVPELL--QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSER 377 (385)
T ss_pred HHHcCCeeeccHHhcCC-ccchhhc--CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHH
Confidence 378899999999 9998874 4 899999999999999987 54 667777777777664 3455554
Q ss_pred HHH
Q 011789 459 NMD 461 (477)
Q Consensus 459 ~~~ 461 (477)
..+
T Consensus 378 ~a~ 380 (385)
T TIGR00215 378 AAQ 380 (385)
T ss_pred HHH
Confidence 443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=3.1e-15 Score=142.24 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=77.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCCCCCchhHHHh--cCCCeEEEeeccHH-Hhhcc
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAK--SKVTFIWILRPDIVSSDDPNPLPEDFKKE--VADRSMIITWCCQT-SVLAH 357 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~--~~~nv~v~~~~p~~-~lL~~ 357 (477)
+.|+|++|...... ....+++++.. .+.++.++++... ...+.+++. ..+|+.+..++++. ++|+.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~-------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN-------PNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC-------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 57999999764322 34455666655 3456777777551 122233221 23589999999987 69999
Q ss_pred CCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHH
Q 011789 358 PAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLA 398 (477)
Q Consensus 358 ~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 398 (477)
+++ +|++|| +|+.|++++|+|+|++|...+|..||+.+
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 998 999999 99999999999999999999999999753
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=6.5e-15 Score=147.34 Aligned_cols=133 Identities=13% Similarity=0.223 Sum_probs=98.0
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCCCCCchhHH---HhcCCCeEEEeeccHH-Hhh
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAKS-KVTFIWILRPDIVSSDDPNPLPEDFK---KEVADRSMIITWCCQT-SVL 355 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~---~~~~~nv~v~~~~p~~-~lL 355 (477)
++++|++..|+.... ..+..+++++... +.++++..+.+. .+-+.++ +..++|+.+.+|+++. +++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-------ALKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-------HHHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 456788877877532 2345566666543 456666655331 1112222 2233589999999876 699
Q ss_pred ccCCCCccccccCCchhhHHHhcCcceecc-ccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 356 AHPAIGGFLTHCGWNSVLEGLWCGVPLLCF-PLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 356 ~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
..+++ +|+.+|..|+.||+++|+|+|+. |....|..|+..+++. |.|+.. .+.++|.++|.++++|+
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-----~~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-----RDDEEVFAKTEALLQDD 339 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-----CCHHHHHHHHHHHHCCH
Confidence 99998 99999988999999999999985 6667788999999999 999876 46789999999999987
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=1.4e-13 Score=137.81 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=110.3
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHH-Hh-CCCeEEEEEcCCCCCCCCCCCCchhHHHh--cCCCeEEEeeccHH-Hh
Q 011789 280 PKGSVLYVSFGSYAHVSKRDLIEIANGI-AK-SKVTFIWILRPDIVSSDDPNPLPEDFKKE--VADRSMIITWCCQT-SV 354 (477)
Q Consensus 280 ~~~~~I~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~~--~~~nv~v~~~~p~~-~l 354 (477)
+++++|+++.|+... ...+..+++++ +. .+.++++..+.+. .+-+.+++. ..+++.+.+|+.+. ++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~-------~l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK-------ELKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH-------HHHHHHHHHhccCCCeEEEeccchHHHH
Confidence 345688888898752 12344444443 22 3456666655431 111222222 23578888999766 59
Q ss_pred hccCCCCccccccCCchhhHHHhcCcceecc-ccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchH
Q 011789 355 LAHPAIGGFLTHCGWNSVLEGLWCGVPLLCF-PLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGA 433 (477)
Q Consensus 355 L~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 433 (477)
+..+++ +|+..|..|+.||+++|+|+|++ |....|..|+..+++. |+|+.. -+.+++.++|.++++|+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~-----~~~~~l~~~i~~ll~~~--- 339 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIA-----DTPEEAIKIVASLTNGN--- 339 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEe-----CCHHHHHHHHHHHhcCH---
Confidence 999998 99988888999999999999998 7767788999999999 999887 37889999999999887
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 434 KYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
+.+ ++|++..++..+ ..+....++.+.+.+.
T Consensus 340 ~~~---~~m~~~~~~~~~-~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 340 EQL---TNMISTMEQDKI-KYATQTICRDLLDLIG 370 (391)
T ss_pred HHH---HHHHHHHHHhcC-CCCHHHHHHHHHHHhh
Confidence 333 334444443222 2344444445544443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=2.3e-13 Score=136.22 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=65.6
Q ss_pred HHhhccCCCCccccccCCchhhHHHhcCcceecccccc--------chhhH-----HHHHHhhhcceeeecCCC-CcCHH
Q 011789 352 TSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYT--------DQFTN-----RKLAVDDWNVGLNLSNEK-VITKE 417 (477)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~G~~~~~~~-~~~~~ 417 (477)
..+++.+++ +|+.+|.+++ |++++|+|+|++|... .|..| +..+.+. +++..+. . ..+++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~~ 329 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELL--QEEATPE 329 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-Ccchhhc--CCCCCHH
Confidence 458999998 9999998888 9999999999985321 22222 2333333 3343331 2 67899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 418 EVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 418 ~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
+|.+++.++++|+ +.+++..+-.+.+.... ..+.+...++.+.+.+
T Consensus 330 ~l~~~i~~ll~~~---~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 330 KLARALLPLLADG---ARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 9999999999998 55543333333333322 1344444444444433
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.51 E-value=1.4e-11 Score=123.22 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=93.4
Q ss_pred CCCcEEEEEecccccCCH-HHHHHHHHHHH-----hCCCeEEEEEcCCCCCCCCCCCCchhHHHh-cCCCeEEEeeccHH
Q 011789 280 PKGSVLYVSFGSYAHVSK-RDLIEIANGIA-----KSKVTFIWILRPDIVSSDDPNPLPEDFKKE-VADRSMIITWCCQT 352 (477)
Q Consensus 280 ~~~~~I~vs~Gs~~~~~~-~~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~nv~v~~~~p~~ 352 (477)
+++++|++..|+...-.. ..++.+...+. ..+.++++..|.+. .+-+.+++. ...++++.+|+++.
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-------~~~~~L~~~~~~~~v~~~G~~~~~ 276 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-------KLQSKLESRDWKIPVKVRGFVTNM 276 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-------HHHHHHHhhcccCCeEEEeccccH
Confidence 445677776666542222 22233322220 23355666766441 111122211 13478888999876
Q ss_pred -HhhccCCCCccccccCCchhhHHHhcCcceeccccccchh-hHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC-
Q 011789 353 -SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQF-TNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE- 429 (477)
Q Consensus 353 -~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~- 429 (477)
+++..+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -++++|.++|.++++|
T Consensus 277 ~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-----~~~~~la~~i~~ll~~~ 348 (382)
T PLN02605 277 EEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-----ESPKEIARIVAEWFGDK 348 (382)
T ss_pred HHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-----CCHHHHHHHHHHHHcCC
Confidence 49999998 999999999999999999999998766664 799999999 999876 4889999999999987
Q ss_pred C
Q 011789 430 K 430 (477)
Q Consensus 430 ~ 430 (477)
+
T Consensus 349 ~ 349 (382)
T PLN02605 349 S 349 (382)
T ss_pred H
Confidence 5
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.47 E-value=1.5e-15 Score=133.46 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=94.9
Q ss_pred EEEEEecccccCCH-HHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeecc-HHHhhccCC
Q 011789 284 VLYVSFGSYAHVSK-RDLIEIANGIAK--SKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCC-QTSVLAHPA 359 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p-~~~lL~~~~ 359 (477)
+|+|+.||.....- +.+..+...+.. ...++++.+|.... ...... .++...|+.+.+|.+ ..+++..++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~-----~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aD 74 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY-----EELKIK-VENFNPNVKVFGFVDNMAELMAAAD 74 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC-----HHHCCC-HCCTTCCCEEECSSSSHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH-----HHHHHH-HhccCCcEEEEechhhHHHHHHHcC
Confidence 58999998753111 112222332222 24678888876522 111111 111125899999999 667999999
Q ss_pred CCccccccCCchhhHHHhcCcceecccccc----chhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCC
Q 011789 360 IGGFLTHCGWNSVLEGLWCGVPLLCFPLYT----DQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 360 ~~~~ItHgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~ 430 (477)
+ +|||||.||++|++++|+|+|++|... +|..||..+++. |.|..+. . ..+.+.|.++|.++++++
T Consensus 75 l--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~--~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 75 L--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLD--ESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp E--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSE--CCC-SCCCHHHHHHCHCCCH
T ss_pred E--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccC--cccCCHHHHHHHHHHHHcCc
Confidence 8 999999999999999999999999988 999999999999 9999994 3 677899999999999887
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.44 E-value=5.2e-11 Score=118.92 Aligned_cols=330 Identities=13% Similarity=0.092 Sum_probs=179.0
Q ss_pred CccCHHHHHHHHHHHHh--CCCeEE---EEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcH
Q 011789 18 LQGHVNPSVQLALKLAS--QGFTIT---FVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNH 92 (477)
Q Consensus 18 ~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (477)
+.|-=.-.++|+++|.+ .|++|. |+++....+.- ..+ . .+ .+..+|. +--...++
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~--~ip-----------~--~g-~~~~~~s----gg~~~~~~ 65 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNL--GIP-----------I--IG-PTKELPS----GGFSYQSL 65 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhC--CCc-----------e--eC-CCCCCCC----CCccCCCH
Confidence 44444567889999998 699999 88887765432 110 0 02 3333442 21122333
Q ss_pred HHHHHHHHH-HhHHHH--HHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCC
Q 011789 93 EQFMSSLLH-VFSAHA--EEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGH 169 (477)
Q Consensus 93 ~~~~~~~~~-~~~~~~--~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 169 (477)
...+.+... .....+ ..++.++.. +||+||+-.-+. ...+|...|+|++.+-+.-...+ +.. ..+.
T Consensus 66 ~~~~~~~~~gl~~~~~~~~~~~~~~~~---~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~------~~~-~~~~ 134 (396)
T TIGR03492 66 RGLLRDLRAGLVGLTLGQWRALRKWAK---KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY------WES-GPRR 134 (396)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhh---cCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee------ecC-CCCC
Confidence 344444333 222211 233344433 899999776454 88899999999999643211000 000 0000
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHcc-CCEEE
Q 011789 170 FQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAK-IPFIT 248 (477)
Q Consensus 170 ~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-~p~~~ 248 (477)
+ ..+...-+||.. ..++ + +..-..+.++.+++.... .. +.++.. .++.+
T Consensus 135 -~----~~~~~~~~~G~~----------------~~p~-e---~n~l~~~~a~~v~~~~~~--t~---~~l~~~g~k~~~ 184 (396)
T TIGR03492 135 -S----PSDEYHRLEGSL----------------YLPW-E---RWLMRSRRCLAVFVRDRL--TA---RDLRRQGVRASY 184 (396)
T ss_pred -c----cchhhhccCCCc----------------cCHH-H---HHHhhchhhCEEeCCCHH--HH---HHHHHCCCeEEE
Confidence 0 000000111111 0011 1 001111455666654422 21 122332 23888
Q ss_pred eCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhC----CCeEEEEEcCCCCC
Q 011789 249 MGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKS----KVTFIWILRPDIVS 324 (477)
Q Consensus 249 vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~ 324 (477)
+|-...+.-.... . .-+ .+++++|.+-.||-...-...+..++++++.. +..+++.+.++..
T Consensus 185 vGnPv~d~l~~~~--------~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~- 250 (396)
T TIGR03492 185 LGNPMMDGLEPPE--------R---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS- 250 (396)
T ss_pred eCcCHHhcCcccc--------c---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-
Confidence 9987766432110 1 011 22346888888887433333445555555543 5677777743311
Q ss_pred CCCCCCCchhHHHhcC-------------------CCeEEEeeccH-HHhhccCCCCccccccCCchhhHHHhcCcceec
Q 011789 325 SDDPNPLPEDFKKEVA-------------------DRSMIITWCCQ-TSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLC 384 (477)
Q Consensus 325 ~~~~~~lp~~~~~~~~-------------------~nv~v~~~~p~-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 384 (477)
. +.+.+.+. +++.+..+..+ .++++.+++ +|+-.|..| .|++..|+|+|+
T Consensus 251 ------~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Il 320 (396)
T TIGR03492 251 ------L-EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQ 320 (396)
T ss_pred ------H-HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEE
Confidence 1 11211111 13555555544 469999998 999999766 999999999999
Q ss_pred cccccchhhHHHHHHh----hhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHH
Q 011789 385 FPLYTDQFTNRKLAVD----DWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAK 440 (477)
Q Consensus 385 ~P~~~DQ~~na~~v~~----~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~ 440 (477)
+|+-..|. |+..+++ . |.++.+ .+.+.+.|.+++.++++|+ +..++..
T Consensus 321 ip~~~~q~-na~~~~~~~~l~-g~~~~l---~~~~~~~l~~~l~~ll~d~---~~~~~~~ 372 (396)
T TIGR03492 321 LPGKGPQF-TYGFAEAQSRLL-GGSVFL---ASKNPEQAAQVVRQLLADP---ELLERCR 372 (396)
T ss_pred EeCCCCHH-HHHHHHhhHhhc-CCEEec---CCCCHHHHHHHHHHHHcCH---HHHHHHH
Confidence 99877786 9887766 3 555665 3455699999999999987 5554443
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=3.7e-13 Score=114.44 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=81.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCC
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRS 89 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (477)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+ +. |++|.+++... .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~------------------Gl~~~~~~~~~--~~~~~ 60 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA------------------GLEFVPIPGDS--RLPRS 60 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT------------------T-EEEESSSCG--GGGHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc------------------CceEEEecCCc--CcCcc
Confidence 78999999999999999999999999999999999999999 66 88999988650 00000
Q ss_pred CcHHHHHHHHHHH--hHHHHHHHHHHhHhc-------CCCccEEEecCCCcchHHHHHHhCCceEEEecchhH
Q 011789 90 LNHEQFMSSLLHV--FSAHAEEVIGQIVRS-------GENVHCLIADTYFVWPSKLAKKFGLYYISFWTESAL 153 (477)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~~ll~~~~~~-------~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~ 153 (477)
......+...... ......+.+...... ....|+++.+.....+..+|+++|||++.....+.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 61 LEPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred cchhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 0011111111111 111122222222111 135788888887778999999999999998666543
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.36 E-value=1.8e-09 Score=106.58 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=98.0
Q ss_pred cEEEEEeccccc-CCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHH---hhcc
Q 011789 283 SVLYVSFGSYAH-VSKRDLIEIANGIAKS-KVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTS---VLAH 357 (477)
Q Consensus 283 ~~I~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~---lL~~ 357 (477)
+.+++..|+... -..+.+..++..+... +..++ .++.... .+.+. ...+|+.+.+|+++.+ ++..
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~-i~G~~~~--------~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ 266 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLV-IVGDGPA--------RARLE-ARYPNVHFLGFLDGEELAAAYAS 266 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEE-EEeCCch--------HHHHh-ccCCcEEEEeccCHHHHHHHHHh
Confidence 466777787642 2223333333333332 33444 3343211 11111 3456899999998775 7999
Q ss_pred CCCCccccccC----CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchH
Q 011789 358 PAIGGFLTHCG----WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGA 433 (477)
Q Consensus 358 ~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 433 (477)
+++ +|..+. .+++.||+++|+|+|+.+.. .+...++.. +.|... +..+.+++.++|.++++|+
T Consensus 267 ~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~---~~~~~~~l~~~i~~l~~~~--- 333 (364)
T cd03814 267 ADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLV---EPGDAEAFAAALAALLADP--- 333 (364)
T ss_pred CCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEc---CCCCHHHHHHHHHHHHcCH---
Confidence 998 776654 47899999999999986644 466677777 899888 5557888999999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 011789 434 KYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKD 466 (477)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 466 (477)
+.+++..+-+.+... .-+.+...+++++.
T Consensus 334 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 334 ELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 555444443333332 33444555555544
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.31 E-value=3.4e-09 Score=108.90 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=88.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCC-CeEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeEEEeeccHHH---hhcc
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKSK-VTFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSMIITWCCQTS---VLAH 357 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~v~~~~p~~~---lL~~ 357 (477)
..+++..|++.. .+.+..++++++..+ .+++ .+|.+ ...+.+++.. ..+|.+.+++++.+ ++..
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G--------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDG--------PYREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCC--------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 355667788753 344666777777654 4444 44433 1112333222 25788889998654 8888
Q ss_pred CCCCcccccc---C-CchhhHHHhcCcceeccccccchhhHHHHHHh---hhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 358 PAIGGFLTHC---G-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVD---DWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 358 ~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+++ ||.-. | -.++.||+++|+|+|+... ......++. . +.|..+ +.-+.+++.++|.++++|+
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~----gg~~eiv~~~~~~-~~G~lv---~~~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARA----GGIPDIIPPDQEG-KTGFLY---TPGDVDDCVEKLETLLADP 401 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCC----CCcHhhhhcCCCC-CceEEe---CCCCHHHHHHHHHHHHhCH
Confidence 998 66432 2 3478899999999998653 234455555 6 788888 4457899999999999987
Q ss_pred ch-HHHHHHHHH
Q 011789 431 SG-AKYRNAAKQ 441 (477)
Q Consensus 431 ~~-~~~~~~a~~ 441 (477)
+. +++.+++++
T Consensus 402 ~~~~~~~~~a~~ 413 (465)
T PLN02871 402 ELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHHH
Confidence 22 334444444
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=2.2e-10 Score=103.64 Aligned_cols=147 Identities=14% Similarity=0.190 Sum_probs=111.5
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcC--CCeEEEeeccHH-HhhccC
Q 011789 282 GSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVA--DRSMIITWCCQT-SVLAHP 358 (477)
Q Consensus 282 ~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~nv~v~~~~p~~-~lL~~~ 358 (477)
+.-|+||+|..- +..+.-+++..+.+.++.+-+++++. .+-+....++.. +|+.+......+ .|+..+
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC-------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 345999999763 23356677888888887777777744 223334444333 577777666644 599999
Q ss_pred CCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHHHH
Q 011789 359 AIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKYRN 437 (477)
Q Consensus 359 ~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~ 437 (477)
++ .|+-||+ |+.|++.-|+|.+++|+...|---|...+.+ |+-..+ + .+.++.....+.++.+|. ..|+
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l---~~~l~~~~~~~~~~~i~~d~---~~rk 298 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQL---GYHLKDLAKDYEILQIQKDY---ARRK 298 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-Cchhhc---cCCCchHHHHHHHHHhhhCH---HHhh
Confidence 98 9998887 8999999999999999999999999999999 998888 6 678888888888999988 7777
Q ss_pred HHHHHHHHHH
Q 011789 438 AAKQVKKAME 447 (477)
Q Consensus 438 ~a~~l~~~~~ 447 (477)
+.-.-++.+.
T Consensus 299 ~l~~~~~~i~ 308 (318)
T COG3980 299 NLSFGSKLIG 308 (318)
T ss_pred hhhhccceee
Confidence 6665554443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.29 E-value=5.1e-09 Score=103.03 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHh---CCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHH---h
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAK---SKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTS---V 354 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~---l 354 (477)
+++.+++..|++... +....++++++. .+.++++. +.... ...........+++.+.+++++.+ +
T Consensus 189 ~~~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~l~i~-G~~~~------~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 189 GGRLRFGFIGQLTPH--KGVDLLLEAFKRLPRGDIELVIV-GNGLE------LEEESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred CCceEEEEEecCccc--cCHHHHHHHHHHHHhcCcEEEEE-cCchh------hhHHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 344677778887532 223334444433 34554443 43311 000001112346899999997665 6
Q ss_pred hccCCCCcccc----ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC
Q 011789 355 LAHPAIGGFLT----HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE 429 (477)
Q Consensus 355 L~~~~~~~~It----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~ 429 (477)
+..+++ +|. ..|+ .++.||+++|+|+|+.+ ...+...+... +.|... +.-+.+++.+++.++++|
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i~~~-~~g~~~---~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELVRDG-VNGLLF---PPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHhcCC-CcEEEE---CCCCHHHHHHHHHHHHhC
Confidence 899988 552 2444 47999999999999855 44566777776 788888 544689999999999998
Q ss_pred C
Q 011789 430 K 430 (477)
Q Consensus 430 ~ 430 (477)
+
T Consensus 330 ~ 330 (359)
T cd03823 330 P 330 (359)
T ss_pred h
Confidence 7
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.22 E-value=1.2e-08 Score=102.43 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=64.0
Q ss_pred CCCeEEEeeccHHH---hhccCCCCccccc---cC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLTH---CG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
.+|+.+.+|+|+.+ ++..+++ ++.. .| -.++.||+++|+|+|+... ......+++. +.|... +
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~---~ 351 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLV---D 351 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEe---C
Confidence 36899999999876 6888888 6643 22 3589999999999988553 4466677777 889988 5
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 011789 413 VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~ 430 (477)
..+.+++.++|.++++|+
T Consensus 352 ~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 352 PRDPEALAAALRRLLTDP 369 (398)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 457999999999999887
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.20 E-value=7.9e-08 Score=96.77 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=62.5
Q ss_pred CCeEEEeeccHHH---hhccCCCCcccc-ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcC
Q 011789 341 DRSMIITWCCQTS---VLAHPAIGGFLT-HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVIT 415 (477)
Q Consensus 341 ~nv~v~~~~p~~~---lL~~~~~~~~It-HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 415 (477)
++|.+.+++|+.+ +|..+++-++.+ +.|. .++.||+++|+|+|+. |.......+... ..|..+ +..+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv---~~~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLV---DFFD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEc---CCCC
Confidence 6888899999875 677888722223 2333 4899999999999984 455666777666 678887 4557
Q ss_pred HHHHHHHHHHHhcCC
Q 011789 416 KEEVSKNVHLLMGEK 430 (477)
Q Consensus 416 ~~~l~~~i~~~l~~~ 430 (477)
.+++.++|.++++|+
T Consensus 353 ~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999987
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.20 E-value=6.2e-08 Score=94.89 Aligned_cols=314 Identities=12% Similarity=0.084 Sum_probs=164.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh-h-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ-M-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
||++++....|+......++++|.++||+|++++....... . .. ++++..++....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---- 58 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEAL------------------GVKVIPIPLDRR---- 58 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccC------------------CceEEecccccc----
Confidence 57888888889999999999999999999999997765542 1 22 566666653210
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
.......+... ..+..+++.. +||+|++..... .+..+++..+.|.+..........
T Consensus 59 -~~~~~~~~~~~-----~~~~~~~~~~-----~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------- 117 (359)
T cd03808 59 -GINPFKDLKAL-----LRLYRLLRKE-----RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV---------- 117 (359)
T ss_pred -ccChHhHHHHH-----HHHHHHHHhc-----CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh----------
Confidence 01111111111 1123333332 999999875443 233444446666655532211000
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHccC-
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAKI- 244 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~- 244 (477)
. ..... .......+.+ .....++.+++.+....+.- .......
T Consensus 118 ------------------~-----~~~~~---------~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~--~~~~~~~~ 161 (359)
T cd03808 118 ------------------F-----TSGGL---------KRRLYLLLER--LALRFTDKVIFQNEDDRDLA--LKLGIIKK 161 (359)
T ss_pred ------------------h-----ccchh---------HHHHHHHHHH--HHHhhccEEEEcCHHHHHHH--HHhcCCCc
Confidence 0 00000 0111111111 11245677787776544321 1101111
Q ss_pred C-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccC-CHHHHHHHHHHHHh--CCCeEEEEEcC
Q 011789 245 P-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHV-SKRDLIEIANGIAK--SKVTFIWILRP 320 (477)
Q Consensus 245 p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~ 320 (477)
. ...+.|...+...... ... . ..+++.+++..|+.... ....+-..+..+.+ .+..+++ ++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~--------~~~-~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~ 227 (359)
T cd03808 162 KKTVLIPGSGVDLDRFSP--------SPE-P----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGD 227 (359)
T ss_pred CceEEecCCCCChhhcCc--------ccc-c----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcC
Confidence 2 2222222222111000 000 0 12345788888887532 23333333444433 2334433 333
Q ss_pred CCCCCCCCCCCchh-HHH-hcCCCeEEEeeccHH-HhhccCCCCccccccC----CchhhHHHhcCcceeccccccchhh
Q 011789 321 DIVSSDDPNPLPED-FKK-EVADRSMIITWCCQT-SVLAHPAIGGFLTHCG----WNSVLEGLWCGVPLLCFPLYTDQFT 393 (477)
Q Consensus 321 ~~~~~~~~~~lp~~-~~~-~~~~nv~v~~~~p~~-~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (477)
... ....... ..+ ...++|.+.++..+. .++..+++ +|.-.. -+++.||+++|+|+|+.+. ..
T Consensus 228 ~~~----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~ 297 (359)
T cd03808 228 GDE----ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDV----PG 297 (359)
T ss_pred CCc----chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecC----CC
Confidence 311 0000000 011 123578888775444 48898887 664332 5789999999999998543 34
Q ss_pred HHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 394 NRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 394 na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+...+++. +.|... +.-+.+++.+++.++++|+
T Consensus 298 ~~~~i~~~-~~g~~~---~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 298 CREAVIDG-VNGFLV---PPGDAEALADAIERLIEDP 330 (359)
T ss_pred chhhhhcC-cceEEE---CCCCHHHHHHHHHHHHhCH
Confidence 55666667 788888 4457899999999999987
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.20 E-value=8e-09 Score=102.51 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=81.0
Q ss_pred CCcEEEEEeccccc-CCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCCCCCchhHHH----hcCCCeEEEeeccHHH-
Q 011789 281 KGSVLYVSFGSYAH-VSKRDLIEIANGIAKS-KVTFIWILRPDIVSSDDPNPLPEDFKK----EVADRSMIITWCCQTS- 353 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~----~~~~nv~v~~~~p~~~- 353 (477)
+++.+++..|+... -..+.+...+..+... +.+++ .++... ..+.+.+ ...+|+.+.+++++.+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~--------~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 288 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP--------EKEELKELAKALGLDNVTFLGRVPKEEL 288 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc--------cHHHHHHHHHHcCCCcEEEeCCCChHHH
Confidence 34577788888753 2223333333333333 34443 334321 1122221 2236899999998765
Q ss_pred --hhccCCCCccccccC---------CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHH
Q 011789 354 --VLAHPAIGGFLTHCG---------WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKN 422 (477)
Q Consensus 354 --lL~~~~~~~~ItHgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~ 422 (477)
++..+++ +|.... -+++.||+++|+|+|+.+... ....+... +.|... +.-+.+++.++
T Consensus 289 ~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~----~~~~~~~~-~~g~~~---~~~~~~~l~~~ 358 (394)
T cd03794 289 PELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE----SAELVEEA-GAGLVV---PPGDPEALAAA 358 (394)
T ss_pred HHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCC----chhhhccC-CcceEe---CCCCHHHHHHH
Confidence 7888887 553322 234799999999999977544 34445555 678777 44488999999
Q ss_pred HHHHhcCC
Q 011789 423 VHLLMGEK 430 (477)
Q Consensus 423 i~~~l~~~ 430 (477)
|.++++|+
T Consensus 359 i~~~~~~~ 366 (394)
T cd03794 359 ILELLDDP 366 (394)
T ss_pred HHHHHhCh
Confidence 99999887
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.19 E-value=1.6e-08 Score=102.41 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCeEEE-eeccHHH---hhccCCCCcccc-c----c-C-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeec
Q 011789 341 DRSMII-TWCCQTS---VLAHPAIGGFLT-H----C-G-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLS 409 (477)
Q Consensus 341 ~nv~v~-~~~p~~~---lL~~~~~~~~It-H----g-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~ 409 (477)
+|+.+. +|+|..+ +|..+++ +|. + | | -+++.||+++|+|+|+.. .......+++. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEE-
Confidence 455555 5888665 6888998 552 1 1 2 347999999999999844 44666777777 889888
Q ss_pred CCCCcCHHHHHHHHHHHhcC---Cch-HHHHHHHHHHH
Q 011789 410 NEKVITKEEVSKNVHLLMGE---KSG-AKYRNAAKQVK 443 (477)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~---~~~-~~~~~~a~~l~ 443 (477)
+ +.++|.++|.++++| ++. +.+++++++.+
T Consensus 366 --~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 --G--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 3 789999999999998 522 34444444433
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.18 E-value=7.2e-08 Score=97.59 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=94.8
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC----CCeEEEEEcCCCCCCCCCCCCchhHHH---hc-CCCeEEEeeccHHH-
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKS----KVTFIWILRPDIVSSDDPNPLPEDFKK---EV-ADRSMIITWCCQTS- 353 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~-~~nv~v~~~~p~~~- 353 (477)
+.+++..|++.. .+.+..++++++.. +.+++ .+|.+ ...+.+++ .. -+||.+.+|+|+.+
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g--------~~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQG--------GGKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCC--------hhHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 466667788752 22344455555432 23333 34432 12222222 11 14788899998764
Q ss_pred --hhccCCCCccccccCC------chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHH
Q 011789 354 --VLAHPAIGGFLTHCGW------NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHL 425 (477)
Q Consensus 354 --lL~~~~~~~~ItHgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~ 425 (477)
++..+++.++.+..+. +.+.|++++|+|+|+....... ....++ +.|+.+ +.-+.+++.++|.+
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~---~~~d~~~la~~i~~ 369 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCV---EPESVEALVAAIAA 369 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEe---CCCCHHHHHHHHHH
Confidence 7888888444444332 2368999999999997643211 122332 567777 44578999999999
Q ss_pred HhcCCch-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh
Q 011789 426 LMGEKSG-AKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQ 472 (477)
Q Consensus 426 ~l~~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 472 (477)
+++|++- +.+++++++..++ .-+.+..++++++.+.+.++
T Consensus 370 l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 370 LARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHHhc
Confidence 9988722 3344444443221 23445677777777665543
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.15 E-value=9.4e-08 Score=93.73 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=65.2
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCcccc----ccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCC
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLT----HCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNE 411 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 411 (477)
..+++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......++.. +.|...
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~--- 323 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLV--- 323 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEe---
Confidence 457899999997554 7888887 552 2456799999999999998654 5567777767 888888
Q ss_pred CCcCHHHHHHHHHHHhcCC
Q 011789 412 KVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~~ 430 (477)
+..+.+++.++|.++++|+
T Consensus 324 ~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 324 PPGDPEALAEAILRLLDDP 342 (374)
T ss_pred CCCCHHHHHHHHHHHHcCh
Confidence 4556899999999999987
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.14 E-value=7.2e-08 Score=95.17 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=61.8
Q ss_pred CCCeEEEeeccHHH---hhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
.+|+.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+.. ....+..++.. +.|..+ +
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~---~ 327 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLF---P 327 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEe---C
Confidence 46899999998765 7888888 5533 33468999999999999854 45567777777 788888 4
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 011789 413 VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~ 430 (477)
..+. ++.+++.++++|+
T Consensus 328 ~~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 328 PGDE-ALAEALLRLLQDP 344 (374)
T ss_pred CCCH-HHHHHHHHHHhCh
Confidence 2233 8999999999987
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=9.6e-08 Score=95.00 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=66.1
Q ss_pred CCCeEEEeeccHH-HhhccCCCCcccc---c-cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLT---H-CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~It---H-gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+++.+.++.++. +++..+++ +|. . |.-.++.||+++|+|+|+. |....+..+++. ..|... +.-
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~---~~~ 321 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLV---DVG 321 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEc---CCC
Confidence 3578888887665 48888887 552 2 3345999999999999985 445566677766 678777 445
Q ss_pred CHHHHHHHHHHHhcCCch-HHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSG-AKYRNAAKQV 442 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~-~~~~~~a~~l 442 (477)
+.+++.+++.++++|++. +++++++++.
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 889999999999988722 3344444443
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.07 E-value=4.7e-07 Score=89.06 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCeEEEeeccHHH---hhccCCCCcccc--ccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLT--HCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~It--HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+|+.+.+++++.+ ++..+++.++.+ -|.-+++.||+++|+|+|+.+. ......++.. +.|... +.-
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~---~~~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLV---PPG 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEE---CCC
Confidence 46899999998764 788888722222 2455789999999999998553 4456667777 778888 556
Q ss_pred CHHHHHHHHHHHhcCC
Q 011789 415 TKEEVSKNVHLLMGEK 430 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~ 430 (477)
+.+++.++|.++++|+
T Consensus 330 ~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 330 DPEALAEAILRLLADP 345 (377)
T ss_pred CHHHHHHHHHHHhcCc
Confidence 8999999999999988
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.05 E-value=3.1e-07 Score=92.70 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCeEEEeeccHHH---hhccCCCCcccc---ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLT---HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
.++|.+.+++|+.+ +|..+++ +|. +.|+ .++.||+++|+|+|+.. .......+++. +.|..+ +
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~----~~~~~e~i~~~-~~g~~~---~ 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAAR----VGGLPVAVADG-ETGLLV---D 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEec----CCCcHhhhccC-CceEEC---C
Confidence 36899999998764 7899997 553 3344 58999999999999854 34455566666 788888 4
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 011789 413 VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~ 430 (477)
.-+.+++.++|.++++|+
T Consensus 352 ~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 352 GHDPADWADALARLLDDP 369 (405)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 458899999999999987
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.04 E-value=2.3e-07 Score=91.78 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=74.0
Q ss_pred cCCCeEEEeecc-HH---HhhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecC
Q 011789 339 VADRSMIITWCC-QT---SVLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSN 410 (477)
Q Consensus 339 ~~~nv~v~~~~p-~~---~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~ 410 (477)
...++...+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+... ......+... +.|..+
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~-- 312 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLA-- 312 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEe--
Confidence 346788889988 43 37888887 6664 334799999999999997543 3444455555 678777
Q ss_pred CCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 411 EKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
+..+.+++.+++.++++|+ +..++..+-+..... +.-+.+...+++++.+.
T Consensus 313 -~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 313 -KPGDPEDLAEGIEWLLADP---DEREELGEAARELAE---NEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -CCCCHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHh
Confidence 4557899999999999988 433322222222221 13344555666655543
No 61
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.04 E-value=3.3e-07 Score=92.34 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=70.1
Q ss_pred CCCeEEEeeccHHH---hhccCCCCcccc---ccCCc-hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
.++|.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+.+.. .....+. . |-+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~g----g~~e~i~-~-~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVG----GIPEVLP-P-DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCC----Cchhhee-C-Cceeec----
Confidence 46788899998654 8888887 543 33554 999999999999996653 2333443 3 434333
Q ss_pred CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 011789 413 VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 471 (477)
..+.+++.+++.+++++. .-.+ .+.+..+...++.-+-+...+++++.+.+.+
T Consensus 317 ~~~~~~l~~~l~~~l~~~---~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 317 EPDVESIVRKLEEAISIL---RTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred CCCHHHHHHHHHHHHhCh---hhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 237899999999999864 1111 1111111212224455566666666665544
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=2.1e-07 Score=91.77 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=89.4
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCC-CeEEEEEcCCCCCCCCCCCCchhHHH-----hcCCCeEEEeeccHHH---
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKSK-VTFIWILRPDIVSSDDPNPLPEDFKK-----EVADRSMIITWCCQTS--- 353 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~-----~~~~nv~v~~~~p~~~--- 353 (477)
..+++..|+... .+....+++++++.. ..+++. +.+ ...+.+.+ ...+||.+.+|+|+.+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g--------~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEG--------PLEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCC--------hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 467778888752 234556777777766 444443 222 11122221 2347899999999754
Q ss_pred hhccCCCCcccc---ccCCc-hhhHHHhcCcceeccccccchhhHHHHHHh-hhcceeeecCCCCcCHHHHHHHHHHHhc
Q 011789 354 VLAHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVD-DWNVGLNLSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 354 lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G~G~~~~~~~~~~~~~l~~~i~~~l~ 428 (477)
++..+++.++.+ +.|.| ++.||+++|+|+|+.... .....+.. . +.|... +.-+.+++.++|.++++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~----~~~~~i~~~~-~~g~~~---~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIG----TGGSYVNLHG-VTGLVV---PPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCC----CchhHHhhCC-CceEEe---CCCCHHHHHHHHHHHHH
Confidence 888888833333 24444 799999999999985543 33344443 5 778877 44589999999999999
Q ss_pred CCch-HHHHHHHHHH
Q 011789 429 EKSG-AKYRNAAKQV 442 (477)
Q Consensus 429 ~~~~-~~~~~~a~~l 442 (477)
|++. +++++++++.
T Consensus 332 ~~~~~~~~~~~~~~~ 346 (357)
T cd03795 332 DPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHH
Confidence 8722 3344444443
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.99 E-value=5.6e-07 Score=87.67 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCeEEEeeccHH-HhhccCCCCcccccc----CCchhhHHHhcCcceeccccccchhhHHHHHHhhhc-ceeeecCCCCc
Q 011789 341 DRSMIITWCCQT-SVLAHPAIGGFLTHC----GWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWN-VGLNLSNEKVI 414 (477)
Q Consensus 341 ~nv~v~~~~p~~-~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~ 414 (477)
+++.+.++.... .++..+++ +|.-. .-+++.||+++|+|+|+.+.... ...+... | .|... +..
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~----~~~~~~~-~~~g~~~---~~~ 304 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG----PSEIIED-GVNGLLV---PNG 304 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCc----hHhhhcc-CcceEEe---CCC
Confidence 567777764433 58888887 55443 24689999999999998654332 3334445 5 88888 555
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAAKQVK 443 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~ 443 (477)
+.+++.++|.++++|+ +.+++..+-+
T Consensus 305 ~~~~~~~~i~~ll~~~---~~~~~~~~~~ 330 (348)
T cd03820 305 DVEALAEALLRLMEDE---ELRKRMGANA 330 (348)
T ss_pred CHHHHHHHHHHHHcCH---HHHHHHHHHH
Confidence 7899999999999998 5444444333
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.97 E-value=1.5e-06 Score=94.36 Aligned_cols=393 Identities=12% Similarity=0.096 Sum_probs=192.1
Q ss_pred CCCCcEEEEEcCCC---------------ccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhh--ccCCC-CCCcc---
Q 011789 5 KTQKPHAIFISYPL---------------QGHVNPSVQLALKLASQG--FTITFVNTHFIHQQM--TKASP-EMGSD--- 61 (477)
Q Consensus 5 ~~~~~~il~~~~~~---------------~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~--~~g~~-~~~~~--- 61 (477)
+.++|.|++++.-+ .|+.-=.+.||++|+++| |+|.++|-......+ ..+.+ +...+
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 34567887776432 245555789999999998 899999866543222 11000 00000
Q ss_pred -ccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHH----HHHHhHh-cCCCccEEEecCCCc--ch
Q 011789 62 -IFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEE----VIGQIVR-SGENVHCLIADTYFV--WP 133 (477)
Q Consensus 62 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ll~~~~~-~~~~pD~iI~D~~~~--~~ 133 (477)
-+.......+++.++.+|.+-....-....+...+..+...+...+.. +.+++.. +...||+|-+.+... .+
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 000001122488888998763322233333344444443333333322 2222211 112599999886544 56
Q ss_pred HHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHH
Q 011789 134 SKLAKKFGLYYISFWTESALVFTLYYHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFN 213 (477)
Q Consensus 134 ~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (477)
..+++.+|||+|....+....- ...+ ...+... .... .....+...+.-
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K-----~~~l-----------------l~~g~~~--~~~~-------~~~y~~~~Ri~~ 374 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDK-----LEQL-----------------LKQGRMS--KEEI-------NSTYKIMRRIEA 374 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhh-----hhhh-----------------ccccccc--cccc-------ccccchHHHHHH
Confidence 7788999999888633311000 0000 0000000 0000 000001111111
Q ss_pred HhhhccCCcEEEEcchhhccHHHHHH--HHc-------------------cCC---EEEeCccCC----CCCCccc--cc
Q 011789 214 SFQDTRNADYVLCNTVHELESEAVTA--LKA-------------------KIP---FITMGPISL----NKFSDRV--VA 263 (477)
Q Consensus 214 ~~~~~~~~~~~l~~s~~~l~~~~~~~--~~~-------------------~~p---~~~vGp~~~----~~~~~~~--~~ 263 (477)
....+..++.+++.|..+.+..+-.+ ..+ ..| +++.|--.. ....... .+
T Consensus 375 Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~ 454 (1050)
T TIGR02468 375 EELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEG 454 (1050)
T ss_pred HHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcc
Confidence 11234678888888877766321111 000 123 343332111 0000000 00
Q ss_pred ---------cccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC-----CeEEEEEcCCCCCCCCC-
Q 011789 264 ---------TSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK-----VTFIWILRPDIVSSDDP- 328 (477)
Q Consensus 264 ---------~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~- 328 (477)
...| .++..|+... + .++++..|.+.. .+-+..+++|+.... ..+.+.++.... .++.
T Consensus 455 ~~~~~~~~~~~~~--~~l~r~~~~p-d-kpvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd-~d~l~ 527 (1050)
T TIGR02468 455 NEEHPAKPDPPIW--SEIMRFFTNP-R-KPMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDD-IDEMS 527 (1050)
T ss_pred cccccccccchhh--HHHHhhcccC-C-CcEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCch-hhhhh
Confidence 0001 3455666543 3 345666787753 333455666655432 234344443211 0000
Q ss_pred ---CCCchhH---HHh--cCCCeEEEeeccHHH---hhccCC--CCccccc---cCC-chhhHHHhcCcceeccccccch
Q 011789 329 ---NPLPEDF---KKE--VADRSMIITWCCQTS---VLAHPA--IGGFLTH---CGW-NSVLEGLWCGVPLLCFPLYTDQ 391 (477)
Q Consensus 329 ---~~lp~~~---~~~--~~~nv~v~~~~p~~~---lL~~~~--~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~DQ 391 (477)
...-..+ .++ +.++|.+.+++++.+ ++..++ ..+||.- =|+ .++.||+++|+|+|+...
T Consensus 528 ~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdv---- 603 (1050)
T TIGR02468 528 SGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKN---- 603 (1050)
T ss_pred ccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCC----
Confidence 0000111 122 236788888888765 565552 1126653 344 489999999999999653
Q ss_pred hhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Q 011789 392 FTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSG-AKYRNAAKQVK 443 (477)
Q Consensus 392 ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~ 443 (477)
......++.. .-|..+ +.-+.+.|+++|.++++|++. +.+.+++.+..
T Consensus 604 GG~~EII~~g-~nGlLV---dP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 604 GGPVDIHRVL-DNGLLV---DPHDQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred CCcHHHhccC-CcEEEE---CCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 3344455555 568888 455889999999999999832 34444444433
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.96 E-value=2.2e-06 Score=86.06 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCCeEEEeeccHHH---hhccCCCCccccc---cC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLTH---CG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
.++|.+.+++|+.+ +|..+++ ++.. -| -.++.||+++|+|+|+.- -......+... +.|... +
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~----~~~~~e~i~~~-~~g~~~---~ 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACN----SGGPLETVVDG-ETGFLC---E 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEEC----CCCcHHHhccC-CceEEe---C
Confidence 46899999998874 7888887 5532 22 257899999999999853 34455566666 678777 3
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 011789 413 VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~ 430 (477)
.+.+++.++|.++++|+
T Consensus 349 -~~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 349 -PTPEEFAEAMLKLANDP 365 (392)
T ss_pred -CCHHHHHHHHHHHHhCh
Confidence 37899999999999987
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.96 E-value=2.3e-07 Score=94.37 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=61.1
Q ss_pred eEEEeeccHH-HhhccCCCCcccc--c--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHH
Q 011789 343 SMIITWCCQT-SVLAHPAIGGFLT--H--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKE 417 (477)
Q Consensus 343 v~v~~~~p~~-~lL~~~~~~~~It--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~ 417 (477)
+.+.+..... .+++.+++ +|+. . +|..++.||+++|+|+|+-|...++......+.+. |.++.. -+.+
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-----~d~~ 376 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-----EDAE 376 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-----CCHH
Confidence 4444443333 47888886 2331 1 33345999999999999999988888888888778 877776 3789
Q ss_pred HHHHHHHHHhcCC
Q 011789 418 EVSKNVHLLMGEK 430 (477)
Q Consensus 418 ~l~~~i~~~l~~~ 430 (477)
+|.++|.++++|+
T Consensus 377 ~La~~l~~ll~~~ 389 (425)
T PRK05749 377 DLAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHHhcCH
Confidence 9999999999988
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.94 E-value=1e-07 Score=94.89 Aligned_cols=135 Identities=17% Similarity=0.188 Sum_probs=84.5
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC-----CCeEEEEEcCCCCCCCCCCCCchhHHHhc--CCCeEEEeeccHH---
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKS-----KVTFIWILRPDIVSSDDPNPLPEDFKKEV--ADRSMIITWCCQT--- 352 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~--~~nv~v~~~~p~~--- 352 (477)
..|+++.+-.... .+.+..+++++... +.++++...++. ..-..+.+.. .+++++.+.+++.
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP-------VVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh-------HHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 4666665433221 13456666666553 455555433321 1111122222 3578888766544
Q ss_pred HhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCch
Q 011789 353 SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSG 432 (477)
Q Consensus 353 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~ 432 (477)
.++..+++ +|+-.|. .+.||+++|+|+|.++-..+++. +.+. |.|..+ ..+.++|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv----~~d~~~i~~ai~~ll~~~-- 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLV----GTDKENITKAAKRLLTDP-- 335 (365)
T ss_pred HHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEe----CCCHHHHHHHHHHHHhCh--
Confidence 57788887 8887764 47999999999999876555542 3346 777666 357899999999999988
Q ss_pred HHHHHHHH
Q 011789 433 AKYRNAAK 440 (477)
Q Consensus 433 ~~~~~~a~ 440 (477)
+.+++..
T Consensus 336 -~~~~~~~ 342 (365)
T TIGR00236 336 -DEYKKMS 342 (365)
T ss_pred -HHHHHhh
Confidence 6665544
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.92 E-value=1.6e-06 Score=85.44 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCCeEEEeeccHHH---hhccCCCCccccc-cC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLTH-CG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~ItH-gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+++.+.+|+++.+ ++..+++-++-++ .| .+++.||+++|+|+|+.+. ......+. . +.|... + .
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~---~-~ 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVV---D-D 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEe---C-C
Confidence 47889999999654 6888887222232 23 4689999999999999653 33344443 3 677777 2 3
Q ss_pred CHHHHHHHHHHHhcCC
Q 011789 415 TKEEVSKNVHLLMGEK 430 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~ 430 (477)
+.+++.++|.++++|+
T Consensus 331 ~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 331 DVDALAAALRRALELP 346 (375)
T ss_pred ChHHHHHHHHHHHhCH
Confidence 4599999999999987
No 69
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.91 E-value=2.8e-06 Score=83.81 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=85.2
Q ss_pred CCcEEEEEecccccC-CHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCCCCCchhH---HH--hcCCCeEEEeeccHH
Q 011789 281 KGSVLYVSFGSYAHV-SKRDLIEIANGIAKS--KVTFIWILRPDIVSSDDPNPLPEDF---KK--EVADRSMIITWCCQT 352 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~---~~--~~~~nv~v~~~~p~~ 352 (477)
++..+++..|.+... ....+-..+..+... +.+++ .+|.... ...+.+.. .+ ...++|.+.+|.+..
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~-ivG~~~~----~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 257 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLL-IVGDAQG----RRFYYAELLELIKRLGLQDRVTFVGHCSDM 257 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEE-EEECCcc----cchHHHHHHHHHHHcCCcceEEEcCCcccH
Confidence 334677777876532 233344444455443 33333 3333211 01111111 11 234678888885544
Q ss_pred -HhhccCCCCcccc--ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhc
Q 011789 353 -SVLAHPAIGGFLT--HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 353 -~lL~~~~~~~~It--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~ 428 (477)
.+|..+++-++-+ +-|+ +++.||+++|+|+|+.- -......+... +.|..+ +.-+.+++.++|..++.
T Consensus 258 ~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~---~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 258 PAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLV---PPGDAEALAQALDQILS 329 (355)
T ss_pred HHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEe---CCCCHHHHHHHHHHHHh
Confidence 4888888833333 2344 59999999999999854 44556666666 688888 45588999999965554
Q ss_pred -CCch-HHHHHHHHHHH
Q 011789 429 -EKSG-AKYRNAAKQVK 443 (477)
Q Consensus 429 -~~~~-~~~~~~a~~l~ 443 (477)
|++- ++++++|++..
T Consensus 330 ~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 330 LLPEGRAKMFAKARMCV 346 (355)
T ss_pred hCHHHHHHHHHHHHHHH
Confidence 5511 33444444443
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.87 E-value=2.7e-06 Score=86.79 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=60.6
Q ss_pred cCCCeEEEeeccHHH---hhccC----CCCcccccc---C-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceee
Q 011789 339 VADRSMIITWCCQTS---VLAHP----AIGGFLTHC---G-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLN 407 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~----~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 407 (477)
+.++|.+.+++++.+ ++..+ ++ ||... | -.++.||+++|+|+|+.. ...+...+... ..|..
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~----~gg~~eiv~~~-~~G~l 387 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATD----DGGPRDIIANC-RNGLL 387 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeC----CCCcHHHhcCC-CcEEE
Confidence 346788888887765 46544 55 76543 3 359999999999999854 44566666665 67888
Q ss_pred ecCCCCcCHHHHHHHHHHHhcCC
Q 011789 408 LSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+ +.-+.+++.++|.++++|+
T Consensus 388 v---~~~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 388 V---DVLDLEAIASALEDALSDS 407 (439)
T ss_pred e---CCCCHHHHHHHHHHHHhCH
Confidence 8 4558899999999999987
No 71
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.87 E-value=1.6e-06 Score=86.07 Aligned_cols=134 Identities=12% Similarity=0.207 Sum_probs=80.6
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCeE-EEEEcCCCCCCCCCCCCchhHHH--hcCCCeEEEeeccH--HH---h
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKSKVTF-IWILRPDIVSSDDPNPLPEDFKK--EVADRSMIITWCCQ--TS---V 354 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~--~~~~nv~v~~~~p~--~~---l 354 (477)
+.+++..|.+.....+.+..+++++......+ ++.+|.+. +...+ ....+ .++++|.+.+|+++ .. .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~----~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS----DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc----cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 35667778764322334556666666643232 33344331 11111 11111 23468999998754 22 4
Q ss_pred hccCCCCcccc--c--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 355 LAHPAIGGFLT--H--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 355 L~~~~~~~~It--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+..+++ +|. + |--.++.||+++|+|+|+.-. .......++.. ..|..+ +.-+.+++.++|.++++|+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv---~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELY---TPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEE---CCCCHHHHHHHHHHHHhCc
Confidence 555676 553 3 224799999999999998541 22333455555 678887 4568999999999999998
No 72
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.85 E-value=2.5e-07 Score=90.07 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=89.1
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCe-EEEEEcCCCCCCCCCCCCchhHHHhcCC--CeEEEeeccHHHhhccCC
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKSKVT-FIWILRPDIVSSDDPNPLPEDFKKEVAD--RSMIITWCCQTSVLAHPA 359 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~--nv~v~~~~p~~~lL~~~~ 359 (477)
++|.+--||-.+.-...+..++++.+....+ .++.+.... .. +.+++...+ .+.+.. .-.+++..++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-------KG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-------cH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 6899999998543335555555555443221 222322221 11 233332221 222332 3346999999
Q ss_pred CCccccccCCchhhHHHhcCcceecccc--ccchhhHHHHHH---hhhcceeeecC-----------CC-CcCHHHHHHH
Q 011789 360 IGGFLTHCGWNSVLEGLWCGVPLLCFPL--YTDQFTNRKLAV---DDWNVGLNLSN-----------EK-VITKEEVSKN 422 (477)
Q Consensus 360 ~~~~ItHgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~~G~G~~~~~-----------~~-~~~~~~l~~~ 422 (477)
+ +|+-.|..|+ |++.+|+|||+ ++ ..-|+.||+++. .. |+.-.+.. -. +.|++.|.+.
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 8 9999999999 99999999988 54 457999999999 55 65543311 13 7889999998
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHH
Q 011789 423 VHLLMGEKSGAKYRNAAKQVKKAM 446 (477)
Q Consensus 423 i~~~l~~~~~~~~~~~a~~l~~~~ 446 (477)
+.+ +..+ .+++...++.+.+
T Consensus 313 i~~-~~~~---~~~~~~~~l~~~l 332 (347)
T PRK14089 313 YKE-MDRE---KFFKKSKELREYL 332 (347)
T ss_pred HHH-HHHH---HHHHHHHHHHHHh
Confidence 877 2222 4555555555554
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.84 E-value=1.4e-05 Score=78.69 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=60.2
Q ss_pred cCCCeEEEe-eccHH---HhhccCCCCccc--cc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeee
Q 011789 339 VADRSMIIT-WCCQT---SVLAHPAIGGFL--TH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNL 408 (477)
Q Consensus 339 ~~~nv~v~~-~~p~~---~lL~~~~~~~~I--tH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~ 408 (477)
..++|.+.+ |+|+. .++..+++ +| ++ |..+++.||+++|+|+|+.+... ...+... +.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 346888775 58865 48888887 55 22 33468999999999999876543 3445566 788887
Q ss_pred cCCCCcCHHHHHHHHHHHhcCC
Q 011789 409 SNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+.-+.+++.+++.++++|+
T Consensus 317 ---~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 317 ---PPGDPAALAEAIRRLLADP 335 (366)
T ss_pred ---cCCCHHHHHHHHHHHHcCh
Confidence 4447899999999999986
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.81 E-value=9.1e-07 Score=87.89 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCcEEEEEecccccC-CHHHHHHHHHHHHhCCC-eEEEEEcCCCCCCCCCCCCchhHHHhc---CCCeEEEeeccHH---
Q 011789 281 KGSVLYVSFGSYAHV-SKRDLIEIANGIAKSKV-TFIWILRPDIVSSDDPNPLPEDFKKEV---ADRSMIITWCCQT--- 352 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~---~~nv~v~~~~p~~--- 352 (477)
+++.|++++|..... ..+.+..++++++.... ++.+...++.. ....+-+ ..++. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---~~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---TRPRIRE-AGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---hHHHHHH-HHHhhccCCCCEEEECCcCHHHHH
Confidence 345788888876543 35567778888776533 24444433311 0011111 11122 3678777655443
Q ss_pred HhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 353 SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 353 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
.++..+++ ||+..| |.+.||+++|+|+|+++.. |. +..+.+. |+++.+ . -+.++|.+++.++++|+
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~---~-~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLV---G-TDPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEec---C-CCHHHHHHHHHHHhcCc
Confidence 46778898 999999 7888999999999998743 22 4455667 777766 2 26899999999999987
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.80 E-value=2.1e-06 Score=83.98 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=80.4
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHh--cCCCeEEEeeccHHH---hhccC
Q 011789 284 VLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKE--VADRSMIITWCCQTS---VLAHP 358 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~--~~~nv~v~~~~p~~~---lL~~~ 358 (477)
.+++..|.... .+....+++++++.+.++++.-.+... ..+-....+. ..+++.+.+++++.+ +++.+
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP-----DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH-----HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 34556677742 333456777777787776654332210 1110111112 257899999998864 68888
Q ss_pred CCCcccc--ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 359 AIGGFLT--HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 359 ~~~~~It--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
++-++-+ +-|+ .++.||+++|+|+|+... ..+...+... ..|... +. .+++.+++.++++++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~---~~--~~~l~~~l~~l~~~~ 309 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLV---DS--VEELAAAVARADRLD 309 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEe---CC--HHHHHHHHHHHhccH
Confidence 8733323 2454 489999999999998543 4444555544 478877 23 899999999887543
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.78 E-value=3.3e-06 Score=83.81 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=64.2
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCccccc----------cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcce
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLTH----------CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVG 405 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~ItH----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 405 (477)
..+++.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+.+. ..++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~----~~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRH----GGIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCC----CCchhheecC-Cee
Confidence 356888889998765 6888887 5431 234689999999999998665 3466777777 889
Q ss_pred eeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 406 LNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 406 ~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
..+ +..+.+++.++|.++++|+
T Consensus 316 ~~~---~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 316 LLV---PEGDVAALAAALGRLLADP 337 (367)
T ss_pred EEE---CCCCHHHHHHHHHHHHcCH
Confidence 888 4558899999999999987
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.77 E-value=1.9e-05 Score=77.68 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCeEEEeeccHHH---hhccCCCCccccc--------cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeee
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLTH--------CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNL 408 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~ItH--------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~ 408 (477)
++||.+.+++|+.+ ++..+++.++-+. |.-+++.||+++|+|+|+.+.. .....++.. ..|...
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~ 309 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGLLV 309 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceEEe
Confidence 47899999998654 7788888333222 2346899999999999986542 233455555 588888
Q ss_pred cCCCCcCHHHHHHHHHHHhcCC
Q 011789 409 SNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+.-+.+++.++|.++++|+
T Consensus 310 ---~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 310 ---PPGDPEALADAIERLLDDP 328 (355)
T ss_pred ---CCCCHHHHHHHHHHHHhCH
Confidence 4448999999999999987
No 78
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.77 E-value=9.9e-06 Score=78.33 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=156.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch--hhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH--QQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (477)
|||.|--.- .-|+.-+-.+.++|.++||+|.+.+-.... +.+ .. ++++..+-..
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y------------------g~~y~~iG~~---- 57 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY------------------GIDYIVIGKH---- 57 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc------------------CCCeEEEcCC----
Confidence 566554332 239999999999999999999998876543 333 33 5666666431
Q ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 86 FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
. .+....+.....+. ..+..++.+. +||++|+- ....+..+|.-+|||+|.+.-........
T Consensus 58 --g-~~~~~Kl~~~~~R~-~~l~~~~~~~-----~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~-------- 119 (335)
T PF04007_consen 58 --G-DSLYGKLLESIERQ-YKLLKLIKKF-----KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN-------- 119 (335)
T ss_pred --C-CCHHHHHHHHHHHH-HHHHHHHHhh-----CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc--------
Confidence 1 22222222222221 1222333333 99999975 45678889999999999995432111000
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEE-EcchhhccHHHHHHHHccC
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVL-CNTVHELESEAVTALKAKI 244 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~ 244 (477)
.-..|+.. ....|...+ . ..+.+.. .+ +-+. .+...+
T Consensus 120 -~Lt~Pla~-----~i~~P~~~~----------------~---~~~~~~G---~~-~~i~~y~G~~E------------- 157 (335)
T PF04007_consen 120 -RLTLPLAD-----VIITPEAIP----------------K---EFLKRFG---AK-NQIRTYNGYKE------------- 157 (335)
T ss_pred -eeehhcCC-----eeECCcccC----------------H---HHHHhcC---Cc-CCEEEECCeee-------------
Confidence 00001000 000110000 0 0000000 01 0111 122111
Q ss_pred CEEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccc----cCCHHHHHHHHHHHHhCCCeEEEEEcC
Q 011789 245 PFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYA----HVSKRDLIEIANGIAKSKVTFIWILRP 320 (477)
Q Consensus 245 p~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~ 320 (477)
..++-|+.++ +++.+-+.. .+++.|++-+.+.. ......+..+++.+++.+..+ +.+..
T Consensus 158 -~ayl~~F~Pd--------------~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~v-V~ipr 220 (335)
T PF04007_consen 158 -LAYLHPFKPD--------------PEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNV-VIIPR 220 (335)
T ss_pred -EEeecCCCCC--------------hhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceE-EEecC
Confidence 2223232222 233333332 24468888877642 123345778899999988874 44433
Q ss_pred CCCCCCCCCCCchhHHHhcCCCeEEE-eeccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHH
Q 011789 321 DIVSSDDPNPLPEDFKKEVADRSMII-TWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAV 399 (477)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~nv~v~-~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 399 (477)
.. ..++.+ ++. ++.+. .-+...+||.++++ +|+=|| ....||..-|+|.|.+ +..+-...-+.+.
T Consensus 221 ~~-------~~~~~~-~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~ 286 (335)
T PF04007_consen 221 YE-------DQRELF-EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI 286 (335)
T ss_pred Cc-------chhhHH-hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH
Confidence 21 111211 111 24444 35666789999998 998777 7889999999999974 2233333445577
Q ss_pred hhhcceeeecCCCCcCHHHHHHHHHHHh
Q 011789 400 DDWNVGLNLSNEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 400 ~~~G~G~~~~~~~~~~~~~l~~~i~~~l 427 (477)
+. |+-.. .-+.+++.+.+.+.+
T Consensus 287 ~~-Gll~~-----~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 287 EK-GLLYH-----STDPDEIVEYVRKNL 308 (335)
T ss_pred HC-CCeEe-----cCCHHHHHHHHHHhh
Confidence 77 76222 356777776554433
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.77 E-value=2.9e-06 Score=82.63 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=58.7
Q ss_pred CCCeEEEeeccHH-HhhccCCCCcccc--c--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLT--H--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~It--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+++.+.++.+.. +++..+++ +|. + |.-+++.||+++|+|+|+.. -......+++. +.|... +.-
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~----~~~~~e~i~~~-~~g~~~---~~~ 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATD----CPGPREILEDG-ENGLLV---PVG 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcC----CCChHHHhcCC-CceEEE---CCC
Confidence 3678888887655 58888887 552 2 33468999999999999854 34667778888 889988 545
Q ss_pred CHHHH---HHHHHHHhcCC
Q 011789 415 TKEEV---SKNVHLLMGEK 430 (477)
Q Consensus 415 ~~~~l---~~~i~~~l~~~ 430 (477)
+.+.+ .+++..+++++
T Consensus 315 ~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 315 DEAALAAAALALLDLLLDP 333 (353)
T ss_pred CHHHHHHHHHHHHhccCCh
Confidence 67777 55566666665
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.75 E-value=3.9e-06 Score=82.83 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCeEEEeeccHH-HhhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+|+.+.++..+. .+|..+++ +|.- |.-+++.||+++|+|+|+ .|...+...++.. |..+.. .
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i~~~-g~~~~~-----~ 311 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVVGDS-GLIVPI-----S 311 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEecCC-ceEeCC-----C
Confidence 3578888876554 58888887 4432 224689999999999987 4555666666654 554433 5
Q ss_pred CHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMG-EKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKD 466 (477)
Q Consensus 415 ~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 466 (477)
+.+++.+++.++++ ++ .+++...+-++.+.+ .-+-+...+++.+.
T Consensus 312 ~~~~~~~~i~~ll~~~~---~~~~~~~~~~~~~~~----~~s~~~~~~~~~~~ 357 (360)
T cd04951 312 DPEALANKIDEILKMSG---EERDIIGARRERIVK----KFSINSIVQQWLTL 357 (360)
T ss_pred CHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH----hcCHHHHHHHHHHH
Confidence 78899999999985 44 444444333333332 33434444454443
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.72 E-value=5.6e-06 Score=81.88 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=81.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCC--CeEEEEEcCCCCCCCCCCCCchhHH--HhcCCCeEEEeeccHHH---hhcc
Q 011789 285 LYVSFGSYAHVSKRDLIEIANGIAKSK--VTFIWILRPDIVSSDDPNPLPEDFK--KEVADRSMIITWCCQTS---VLAH 357 (477)
Q Consensus 285 I~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~lp~~~~--~~~~~nv~v~~~~p~~~---lL~~ 357 (477)
.++..|++.. .+....++++++... .++ +.+|.... ...+-+... ....++|.+.+++|+.+ ++..
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l-~ivG~~~~----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKL-VIVGNADH----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceE-EEEcCCCC----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 3456788753 233455666666544 343 33443211 111111122 12347899999998875 6666
Q ss_pred CCCCcccccc----CC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCch
Q 011789 358 PAIGGFLTHC----GW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSG 432 (477)
Q Consensus 358 ~~~~~~ItHg----G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~ 432 (477)
+++ ++.+. |. +++.||+++|+|+|+..... +...++.. | ... .. ... +.+++.++++|+
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g--~~~---~~-~~~-l~~~i~~l~~~~-- 331 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-A--IYF---KV-GDD-LASLLEELEADP-- 331 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-e--eEe---cC-chH-HHHHHHHHHhCH--
Confidence 776 54433 33 47999999999999865432 22222222 3 333 11 112 999999999887
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 011789 433 AKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKD 466 (477)
Q Consensus 433 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 466 (477)
+..++..+-+..... ..-+-+...+++++.
T Consensus 332 -~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~ 361 (363)
T cd04955 332 -EEVSAMAKAARERIR---EKYTWEKIADQYEEL 361 (363)
T ss_pred -HHHHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 443333322222221 123444555555544
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.65 E-value=0.00018 Score=76.83 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCeEEEeec-cHH---Hhhcc-CC-CCcccc---ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeec
Q 011789 340 ADRSMIITWC-CQT---SVLAH-PA-IGGFLT---HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLS 409 (477)
Q Consensus 340 ~~nv~v~~~~-p~~---~lL~~-~~-~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~ 409 (477)
.++|.+.++. +.. +++.+ ++ ..+||. .=|+ -++.||++||+|+|+ .+....+..++.- .-|..+
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA----T~~GG~~EiV~dg-~tGfLV- 691 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA----TRFGGPLEIIQDG-VSGFHI- 691 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE----cCCCCHHHHhcCC-CcEEEe-
Confidence 3678777764 332 35542 21 112663 3344 489999999999998 4555677777777 789999
Q ss_pred CCCCcCHHHHHHHHHHHh----cCC
Q 011789 410 NEKVITKEEVSKNVHLLM----GEK 430 (477)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l----~~~ 430 (477)
+.-+.++++++|.+++ +|+
T Consensus 692 --dp~D~eaLA~aL~~ll~kll~dp 714 (784)
T TIGR02470 692 --DPYHGEEAAEKIVDFFEKCDEDP 714 (784)
T ss_pred --CCCCHHHHHHHHHHHHHHhcCCH
Confidence 5457888999988775 566
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.64 E-value=2.2e-05 Score=77.43 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=59.3
Q ss_pred CCCeEEEeeccHH-HhhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+++.+.++..+. +++..+++ +|.- |--.++.||+++|+|+|+... ......+.. +.|... ..-
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~----~~~~~~i~~--~~~~~~---~~~ 316 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDT----ITKEVDLTD--LVKFLS---LDE 316 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcC----Cchhhhhcc--CccEEe---CCC
Confidence 4678888875443 58888887 5532 345789999999999998544 333444443 445444 234
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAA 439 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a 439 (477)
+++++.++|.++++|+ +.+++.
T Consensus 317 ~~~~~a~~i~~l~~~~---~~~~~~ 338 (358)
T cd03812 317 SPEIWAEEILKLKSED---RRERSS 338 (358)
T ss_pred CHHHHHHHHHHHHhCc---chhhhh
Confidence 6799999999999998 544433
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.64 E-value=2.8e-05 Score=77.86 Aligned_cols=131 Identities=13% Similarity=0.226 Sum_probs=78.6
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCCCCCchhHHHh---cC---CCeEEE-eeccHHH
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKS--KVTFIWILRPDIVSSDDPNPLPEDFKKE---VA---DRSMII-TWCCQTS 353 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~---~~---~nv~v~-~~~p~~~ 353 (477)
.++++..|.... .+.+..++++++.. +..+++..++... ..+-+.+++. +. +++... .++++.+
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT-----PEVAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc-----HHHHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 356677787753 23345566666554 3444444333210 1111122211 11 235544 5777654
Q ss_pred ---hhccCCCCccccc---cC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCH------HHHH
Q 011789 354 ---VLAHPAIGGFLTH---CG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITK------EEVS 420 (477)
Q Consensus 354 ---lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~------~~l~ 420 (477)
++..+++ +|.= -| ..++.||+++|+|+|+.. .......++.. +.|..+ +.-+. +.+.
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~---~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLV---PPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEc---CCCCCcccchHHHHH
Confidence 7888997 5532 23 346799999999999854 44566677777 788888 32233 8899
Q ss_pred HHHHHHhcCC
Q 011789 421 KNVHLLMGEK 430 (477)
Q Consensus 421 ~~i~~~l~~~ 430 (477)
++|.++++|+
T Consensus 344 ~~i~~l~~~~ 353 (388)
T TIGR02149 344 KAINILLADP 353 (388)
T ss_pred HHHHHHHhCH
Confidence 9999999987
No 85
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=4.2e-05 Score=74.38 Aligned_cols=319 Identities=13% Similarity=0.146 Sum_probs=180.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhhcc-CCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 12 IFISYPLQGHVNPSVQLALKLASQ--GFTITFVN-THFIHQQMTK-ASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 12 l~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
+.+=.-+.|-++-.++|.++|.++ ++.+++-+ ++...+.++. -.+ .+.+..+|-+.+
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~---------------~v~h~YlP~D~~---- 112 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD---------------SVIHQYLPLDLP---- 112 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC---------------CeEEEecCcCch----
Confidence 334445789999999999999999 88998877 7777777633 222 355555553221
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEe-cCCCc-chHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIA-DTYFV-WPSKLAKKFGLYYISFWTESALVFTLYYHLDLLT 165 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~-D~~~~-~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~ 165 (477)
.. +..+++.+ +||++|. +.-.+ ....-+++.|||.+.+
T Consensus 113 ------~~-----------v~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~Lv------------------ 152 (419)
T COG1519 113 ------IA-----------VRRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLV------------------ 152 (419)
T ss_pred ------HH-----------HHHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEE------------------
Confidence 11 33446666 9998774 43333 4566778999999998
Q ss_pred hcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHh-hhccCCcEEEEcchhhccHHHHHHHHcc-
Q 011789 166 INGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSF-QDTRNADYVLCNTVHELESEAVTALKAK- 243 (477)
Q Consensus 166 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~- 243 (477)
++.++-. .+. -+..+.... ..+.+.++++..+.. +...+ ...
T Consensus 153 -NaRLS~r-------------------S~~-----------~y~k~~~~~~~~~~~i~li~aQse~--D~~Rf---~~LG 196 (419)
T COG1519 153 -NARLSDR-------------------SFA-----------RYAKLKFLARLLFKNIDLILAQSEE--DAQRF---RSLG 196 (419)
T ss_pred -eeeechh-------------------hhH-----------HHHHHHHHHHHHHHhcceeeecCHH--HHHHH---HhcC
Confidence 1111100 000 011111111 122456777776644 32222 222
Q ss_pred CC-EEEeCccCCCCCCccccccccCCc-cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCC--CeEEEEEc
Q 011789 244 IP-FITMGPISLNKFSDRVVATSLWSE-SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSK--VTFIWILR 319 (477)
Q Consensus 244 ~p-~~~vGp~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~ 319 (477)
.+ +...|.+-.+-...... ..+ +.+...++.+ ..+.|..+|+.. ..+.+-....++.+.. ...||+ .
T Consensus 197 a~~v~v~GNlKfd~~~~~~~----~~~~~~~r~~l~~~---r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlV-P 267 (419)
T COG1519 197 AKPVVVTGNLKFDIEPPPQL----AAELAALRRQLGGH---RPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILV-P 267 (419)
T ss_pred CcceEEecceeecCCCChhh----HHHHHHHHHhcCCC---CceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEe-c
Confidence 23 88888887654321110 000 1222223321 356677777543 3344444555555432 334444 2
Q ss_pred CCCCCCCCCCCCch--hHHHh---------------cCCCeEEEeeccHHH-hhccCCC----CccccccCCchhhHHHh
Q 011789 320 PDIVSSDDPNPLPE--DFKKE---------------VADRSMIITWCCQTS-VLAHPAI----GGFLTHCGWNSVLEGLW 377 (477)
Q Consensus 320 ~~~~~~~~~~~lp~--~~~~~---------------~~~nv~v~~~~p~~~-lL~~~~~----~~~ItHgG~gs~~eal~ 377 (477)
-+. +..++ +..++ ...+|.+.+-+--+- ++.-+++ |-++-+||.| ..|+++
T Consensus 268 RHp------ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~ 340 (419)
T COG1519 268 RHP------ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAA 340 (419)
T ss_pred CCh------hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHH
Confidence 221 11111 00000 012455555444333 3333332 1256699998 579999
Q ss_pred cCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHH
Q 011789 378 CGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSG-AKYRNAAKQVKKAME 447 (477)
Q Consensus 378 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~ 447 (477)
+|+|+|.=|+..-|.+-++++.+. |.|+.+ + +.+.|.+++..+++|++. ..|.+++.++-+..+
T Consensus 341 ~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v---~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 341 FGTPVIFGPYTFNFSDIAERLLQA-GAGLQV---E--DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred cCCCEEeCCccccHHHHHHHHHhc-CCeEEE---C--CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 999999 3 378888889888887633 445555555544444
No 86
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.63 E-value=5.2e-05 Score=74.31 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=55.6
Q ss_pred CCeEEEeeccHH-HhhccCCCCccccccC----CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcC
Q 011789 341 DRSMIITWCCQT-SVLAHPAIGGFLTHCG----WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVIT 415 (477)
Q Consensus 341 ~nv~v~~~~p~~-~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 415 (477)
+++.+.+..... .++..+++ +|.... .+++.||+++|+|+|+. |...+...+.+. | ..+ +.-+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~~-g--~~~---~~~~ 318 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGDT-G--FLV---PPGD 318 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhcC-C--EEe---CCCC
Confidence 566666654443 58899998 665433 47999999999999984 444555555543 4 444 3347
Q ss_pred HHHHHHHHHHHhcCC
Q 011789 416 KEEVSKNVHLLMGEK 430 (477)
Q Consensus 416 ~~~l~~~i~~~l~~~ 430 (477)
.+++.+++.++++|+
T Consensus 319 ~~~l~~~i~~l~~~~ 333 (365)
T cd03807 319 PEALAEAIEALLADP 333 (365)
T ss_pred HHHHHHHHHHHHhCh
Confidence 899999999999986
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.61 E-value=5e-05 Score=75.68 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCeEEEeeccHH-HhhccCCCCccc--cc--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcC
Q 011789 341 DRSMIITWCCQT-SVLAHPAIGGFL--TH--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVIT 415 (477)
Q Consensus 341 ~nv~v~~~~p~~-~lL~~~~~~~~I--tH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 415 (477)
+++++.++..+. .++..+++ +| ++ |--.++.||+++|+|+|+... ..+...++.. ..|..+ +.-+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~---~~~d 324 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALV---PPGD 324 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEe---CCCC
Confidence 456666654433 58899998 55 33 335699999999999999554 4466666666 678888 4457
Q ss_pred HHHHHHHHHHHhcCC
Q 011789 416 KEEVSKNVHLLMGEK 430 (477)
Q Consensus 416 ~~~l~~~i~~~l~~~ 430 (477)
.+++.++|.++++|+
T Consensus 325 ~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 325 AVALARALQPYVSDP 339 (374)
T ss_pred HHHHHHHHHHHHhCH
Confidence 899999999999887
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.61 E-value=7.2e-06 Score=80.82 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=61.7
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCC
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNE 411 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 411 (477)
..+++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~--- 318 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYF--- 318 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeee---
Confidence 457899999998764 7888887 4422 3346899999999999985542 22222322 34444
Q ss_pred CCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011789 412 KVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKK 444 (477)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~ 444 (477)
...+.+++.++|.++++|+ +.+.+..+-+.
T Consensus 319 ~~~~~~~~~~~i~~l~~~~---~~~~~~~~~~~ 348 (365)
T cd03809 319 DPLDPEALAAAIERLLEDP---ALREELRERGL 348 (365)
T ss_pred CCCCHHHHHHHHHHHhcCH---HHHHHHHHHHH
Confidence 3347899999999999988 55555444443
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.58 E-value=6.9e-05 Score=74.70 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCeEEEe-eccHHH---hhccCCCCcccc-c-----cCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeec
Q 011789 341 DRSMIIT-WCCQTS---VLAHPAIGGFLT-H-----CGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLS 409 (477)
Q Consensus 341 ~nv~v~~-~~p~~~---lL~~~~~~~~It-H-----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~ 409 (477)
+|+.+.. |+|+.+ +|+.+++ +|. + -|. +++.||+++|+|+|+.. -..+...+++. +.|..+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~----~gg~~eiv~~g-~~G~lv- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIGELVKDG-KNGLLF- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEec----CCChHHHccCC-CCeEEE-
Confidence 4566655 788766 5999998 652 1 122 47999999999999854 34467777777 789998
Q ss_pred CCCCcCHHHHHHHHHHHh
Q 011789 410 NEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l 427 (477)
+ +.++|.++|.++|
T Consensus 358 --~--~~~~la~~i~~l~ 371 (371)
T PLN02275 358 --S--SSSELADQLLELL 371 (371)
T ss_pred --C--CHHHHHHHHHHhC
Confidence 3 5888999988765
No 90
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.55 E-value=0.00011 Score=74.24 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred CCCeEEEeeccHHH---hhccCCCCcccc--c-------cCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhccee
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLT--H-------CGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGL 406 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~It--H-------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 406 (477)
.++|.+.+|+|+.+ ++..+++ +|. + -|. .++.||+++|+|+|+... ......++.. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 46899999999875 7888888 553 2 344 568999999999998643 3455566666 6788
Q ss_pred eecCCCCcCHHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 407 NLSNEKVITKEEVSKNVHLLMG-EKSG-AKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 407 ~~~~~~~~~~~~l~~~i~~~l~-~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
.+ +.-+.+++.++|.++++ |++. +++.+++++.. . ..-+.+...+++.+.++
T Consensus 351 lv---~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v---~----~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LV---PENDAQALAQRLAAFSQLDTDELAPVVKRAREKV---E----TDFNQQVINRELASLLQ 404 (406)
T ss_pred Ee---CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---H----HhcCHHHHHHHHHHHHh
Confidence 88 44589999999999998 8721 22333333222 1 12344556666665554
No 91
>PLN00142 sucrose synthase
Probab=98.50 E-value=7.7e-05 Score=79.63 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=52.8
Q ss_pred CCeEEEee----ccHHHhhc----cCCCCcccc---ccCCc-hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeee
Q 011789 341 DRSMIITW----CCQTSVLA----HPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNL 408 (477)
Q Consensus 341 ~nv~v~~~----~p~~~lL~----~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~ 408 (477)
++|.+.+. .+..+++. .+++ ||. +-|+| ++.||+++|+|+|+. |.......++.- .-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVAT----dvGG~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CQGGPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEe
Confidence 56666543 33344543 2344 654 35655 899999999999884 445566666666 679888
Q ss_pred cCCCCcCHHHHHHHHHHH----hcCC
Q 011789 409 SNEKVITKEEVSKNVHLL----MGEK 430 (477)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~----l~~~ 430 (477)
+.-+.+++.++|.++ ++|+
T Consensus 715 ---~P~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 715 ---DPYHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred ---CCCCHHHHHHHHHHHHHHhcCCH
Confidence 444778888887654 5677
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.48 E-value=6.6e-06 Score=82.84 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=59.4
Q ss_pred CCCeEEEeeccHH-HhhccCCCCccc--cc--cCCc-hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCC
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFL--TH--CGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKV 413 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~I--tH--gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 413 (477)
.++|.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. ..+.. |.|..+ .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~-~~g~lv---~- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALP-GAELLV---A- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccC-CcceEe---C-
Confidence 3688899999865 48888998 55 32 4553 699999999999998754322 12234 677777 3
Q ss_pred cCHHHHHHHHHHHhcCC
Q 011789 414 ITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 414 ~~~~~l~~~i~~~l~~~ 430 (477)
-+.+++.++|.++++|+
T Consensus 347 ~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 347 ADPADFAAAILALLANP 363 (397)
T ss_pred CCHHHHHHHHHHHHcCH
Confidence 58899999999999987
No 93
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.47 E-value=9.2e-05 Score=74.83 Aligned_cols=123 Identities=10% Similarity=0.000 Sum_probs=73.0
Q ss_pred EEEEecccccCCHHHHHHHHHHHHh----CCCeEEEEEcCCCCCCCCCCCCchhHHHhc---CCCeEE-EeeccHHHhhc
Q 011789 285 LYVSFGSYAHVSKRDLIEIANGIAK----SKVTFIWILRPDIVSSDDPNPLPEDFKKEV---ADRSMI-ITWCCQTSVLA 356 (477)
Q Consensus 285 I~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~---~~nv~v-~~~~p~~~lL~ 356 (477)
+++..|-+.. .+.+..++++++. .+.--++.+|.+. .-+.+++.. +-++.+ .++.+..+++.
T Consensus 230 ~~l~vGRL~~--eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp--------~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~ 299 (462)
T PLN02846 230 GAYYIGKMVW--SKGYKELLKLLHKHQKELSGLEVDLYGSGE--------DSDEVKAAAEKLELDVRVYPGRDHADPLFH 299 (462)
T ss_pred EEEEEecCcc--cCCHHHHHHHHHHHHhhCCCeEEEEECCCc--------cHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 4556677653 3334555555543 2222244455442 222333322 212333 34666667999
Q ss_pred cCCCCcccccc----CCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 357 HPAIGGFLTHC----GWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 357 ~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
..++ ||.-+ =-.++.||+++|+|+|+.-. +.+ ..+.+- +-|... -+.+++.+++.++|+++
T Consensus 300 ~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~----~~~-~~v~~~-~ng~~~-----~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 300 DYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANH----PSN-EFFKQF-PNCRTY-----DDGKGFVRATLKALAEE 364 (462)
T ss_pred hCCE--EEECCCcccchHHHHHHHHcCCcEEEecC----CCc-ceeecC-CceEec-----CCHHHHHHHHHHHHccC
Confidence 8887 88763 34689999999999999543 332 334444 556555 36789999999999864
No 94
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.44 E-value=6.9e-05 Score=73.57 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=109.1
Q ss_pred EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh-----CCCeEEEEEcC
Q 011789 246 FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK-----SKVTFIWILRP 320 (477)
Q Consensus 246 ~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~ 320 (477)
+.+||-.+.+...... .+.+..+.+ -.+++++|.+--||-.+.=...+..++++.+. .+.++++....
T Consensus 155 ~~~VGHPl~d~~~~~~------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~ 227 (373)
T PF02684_consen 155 VTYVGHPLLDEVKPEP------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP 227 (373)
T ss_pred eEEECCcchhhhccCC------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 8999977665432111 002222222 22356799999999754333444555555433 34556655433
Q ss_pred CCCCCCCCCCCchhHHHhcCCCeEEEe-eccHHHhhccCCCCccccccCCchhhHHHhcCcceeccc-cccchhhHHHHH
Q 011789 321 DIVSSDDPNPLPEDFKKEVADRSMIIT-WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFP-LYTDQFTNRKLA 398 (477)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~nv~v~~-~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v 398 (477)
... ...-....+....++.+.- .-.-.+++..+++ .+.-.|- .+.|+...|+|||++= ...=.+..|+++
T Consensus 228 ~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~l 299 (373)
T PF02684_consen 228 EVH-----EELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRL 299 (373)
T ss_pred HHH-----HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHh
Confidence 211 0000011112223333332 2244568888887 6665554 4789999999997653 334455667776
Q ss_pred HhhhcceeeecC--------C---C-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 011789 399 VDDWNVGLNLSN--------E---K-VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKN 459 (477)
Q Consensus 399 ~~~~G~G~~~~~--------~---~-~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 459 (477)
.+. .. +.+.+ . . +.+++.|.+++.++|+|+ +.++......+++.+..++|.++...
T Consensus 300 vk~-~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 300 VKV-KY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENP---EKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred hcC-CE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 554 32 11111 0 1 789999999999999998 66666666666666665566665553
No 95
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.42 E-value=0.00014 Score=74.66 Aligned_cols=345 Identities=14% Similarity=0.080 Sum_probs=175.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDR 88 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (477)
.||+++..-..|++.- ..|.++|+++.=++.+.+-..-.-. +.|.+ . -.+...-.
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~M~-aaG~e------------------~-----l~d~~eLs 281 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQMR-AEGFH------------------P-----LFNMEEFQ 281 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHHHH-hCcCc------------------c-----cCChHHhh
Confidence 4777777777787765 4577778877656666544332211 23222 0 00000111
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEe-cCCCc--chHHHHHHhCC--ceEEEecchhHHHHHHhhhhh
Q 011789 89 SLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIA-DTYFV--WPSKLAKKFGL--YYISFWTESALVFTLYYHLDL 163 (477)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~-D~~~~--~~~~~A~~~gI--P~v~~~~~~~~~~~~~~~~~~ 163 (477)
..++.+.+..+ .......+.+.+.+.++ +||++|. |.-.+ .....+++.|+ |++-+.+
T Consensus 282 VmG~~EVL~~l-~~l~~~~~~l~~~i~~~--kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs-------------- 344 (608)
T PRK01021 282 VSGFWEVLLAL-FKLWYRYRKLYKTILKT--NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC-------------- 344 (608)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC--------------
Confidence 22333444443 33444556666666664 9999884 76444 45556788896 9877622
Q ss_pred hhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHHcc
Q 011789 164 LTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALKAK 243 (477)
Q Consensus 164 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 243 (477)
|.+.+++.. +. +.+. +..|..+ +...||.+.. +..
T Consensus 345 --------------------PqVWAWR~~----------Ri----kki~------k~vD~ll--~IfPFE~~~y---~~~ 379 (608)
T PRK01021 345 --------------------PSIWAWRPK----------RK----TILE------KYLDLLL--LILPFEQNLF---KDS 379 (608)
T ss_pred --------------------ccceeeCcc----------hH----HHHH------HHhhhhe--ecCccCHHHH---Hhc
Confidence 112222211 11 1111 1122222 1223554432 333
Q ss_pred C-CEEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHH--hC--CCeEEEEE
Q 011789 244 I-PFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIA--KS--KVTFIWIL 318 (477)
Q Consensus 244 ~-p~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~ 318 (477)
. |+.+||-...+.....+ +.++..+.+.-.+++++|-+--||-.+.=.+.+..++++.+ .. +.++++..
T Consensus 380 gv~v~yVGHPL~d~i~~~~------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~ 453 (608)
T PRK01021 380 PLRTVYLGHPLVETISSFS------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSS 453 (608)
T ss_pred CCCeEEECCcHHhhcccCC------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEec
Confidence 3 39999977766432110 00222333333345679999999986443455666776665 33 34555432
Q ss_pred cCCCCCCCCCCCCchhHHHhcC-C---CeEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceecc-ccccchhh
Q 011789 319 RPDIVSSDDPNPLPEDFKKEVA-D---RSMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCF-PLYTDQFT 393 (477)
Q Consensus 319 ~~~~~~~~~~~~lp~~~~~~~~-~---nv~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~ 393 (477)
... ...+.+++... . ++.+..--...++++.|++ .+.-.|. .+.|+...|+|||++ -...=-..
T Consensus 454 a~~--------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~ 522 (608)
T PRK01021 454 ANP--------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTF 522 (608)
T ss_pred Cch--------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHH
Confidence 221 11122222221 1 2233321012579999998 7777775 467999999999874 23333345
Q ss_pred HHHHHHhh--h--c-----ceeeecC---C-C-CcCHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHhcCCCchHH
Q 011789 394 NRKLAVDD--W--N-----VGLNLSN---E-K-VITKEEVSKNVHLLMGEKSG-AKYRNAAKQVKKAMEYALQPNGSSDK 458 (477)
Q Consensus 394 na~~v~~~--~--G-----~G~~~~~---~-~-~~~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~ 458 (477)
.++++.+. . | +|..+-. . . +.++++|.+++ ++|.|++. +++++..+++.+.+ .+|.+.-+
T Consensus 523 Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L----g~~~~~~~ 597 (608)
T PRK01021 523 LAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM----NESASTMK 597 (608)
T ss_pred HHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh----cCCCCCHH
Confidence 56666550 0 1 1111110 0 1 57899999997 88888722 34455555555544 33555444
Q ss_pred HHHH
Q 011789 459 NMDQ 462 (477)
Q Consensus 459 ~~~~ 462 (477)
.+..
T Consensus 598 ~~~~ 601 (608)
T PRK01021 598 ECLS 601 (608)
T ss_pred HHHH
Confidence 4433
No 96
>PLN02949 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.00055 Score=69.98 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCCeEEEeeccHHH---hhccCCCCcccc---ccCCc-hhhHHHhcCcceeccccccchhhHHHHHHh--hhcceeeecC
Q 011789 340 ADRSMIITWCCQTS---VLAHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVD--DWNVGLNLSN 410 (477)
Q Consensus 340 ~~nv~v~~~~p~~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~G~~~~~ 410 (477)
.++|.+.+++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+- ....+.. .-..|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 57899999998765 7888887 552 34444 79999999999999765320 0011111 10134333
Q ss_pred CCCcCHHHHHHHHHHHhcC-Cc-hHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhhh
Q 011789 411 EKVITKEEVSKNVHLLMGE-KS-GAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQSK 474 (477)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~-~~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 474 (477)
. +.+++.++|.+++++ ++ .+++.+++++-.++ =+.+...+++.+.+++.+.|.
T Consensus 407 --~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 407 --T-TVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRPILNSA 461 (463)
T ss_pred --C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHHHHhhh
Confidence 2 789999999999985 31 13455555544333 344566667766666665543
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.40 E-value=0.00028 Score=71.49 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=56.8
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCccccc---cCC-chhhHHHhcCcceeccccccchhhHHHHHH---hhhcceeee
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLTH---CGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAV---DDWNVGLNL 408 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~G~~~ 408 (477)
+.++|.+.+++|+.+ +|..+++ +|+- -|. -++.||+++|+|+|+.-..+. ....++ .. ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 347899999998775 8888887 5431 222 388999999999987543221 112232 34 577776
Q ss_pred cCCCCcCHHHHHHHHHHHhcCC
Q 011789 409 SNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 409 ~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
.+.+++.++|.++++++
T Consensus 377 -----~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -----STAEEYAEAIEKILSLS 393 (419)
T ss_pred -----CCHHHHHHHHHHHHhCC
Confidence 28999999999999876
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.39 E-value=5.2e-05 Score=75.61 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=68.3
Q ss_pred CCCeEEEeec--cHH---HhhccCCCCcccccc---CC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecC
Q 011789 340 ADRSMIITWC--CQT---SVLAHPAIGGFLTHC---GW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSN 410 (477)
Q Consensus 340 ~~nv~v~~~~--p~~---~lL~~~~~~~~ItHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~ 410 (477)
.+++.+..+. ++. .+++.+++ |+.-. |+ .++.||+++|+|+|+... ......+... +.|...
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i~~~-~~g~~~-- 321 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQIEDG-ETGFLV-- 321 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhcccC-CceEEe--
Confidence 4578887776 443 37788887 66432 33 499999999999998653 3344456555 677766
Q ss_pred CCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 411 EKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
+ +.+.+..+|.++++|+ +.++...+-+.+... +.-+-+..++++++.+.
T Consensus 322 -~--~~~~~a~~i~~ll~~~---~~~~~~~~~a~~~~~---~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 322 -D--TVEEAAVRILYLLRDP---ELRRKMGANAREHVR---ENFLITRHLKDYLYLIS 370 (372)
T ss_pred -C--CcHHHHHHHHHHHcCH---HHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHH
Confidence 2 4567888999999887 544433333333221 12343445555555443
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.0016 Score=69.51 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=64.1
Q ss_pred CCCeEEEeeccHH-HhhccCCCCcccc---ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLT---HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.++|.+.+|.++. .+|..+++ ||. +.|+ +++.||+++|+|+|+... ......+++- ..|..+..+ +.
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~-d~ 644 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPAD-TV 644 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCC-CC
Confidence 4788888988765 48888888 553 5564 689999999999999653 3455566666 678888311 55
Q ss_pred CHHHHHHHHHHHhc----CCchHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMG----EKSGAKYRNAAKQV 442 (477)
Q Consensus 415 ~~~~l~~~i~~~l~----~~~~~~~~~~a~~l 442 (477)
+.+++.+++.+++. ++ .+++++++.
T Consensus 645 ~~~~La~aL~~ll~~l~~~~---~l~~~ar~~ 673 (694)
T PRK15179 645 TAPDVAEALARIHDMCAADP---GIARKAADW 673 (694)
T ss_pred ChHHHHHHHHHHHhChhccH---HHHHHHHHH
Confidence 66777777776654 44 566655443
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.26 E-value=3.5e-06 Score=69.16 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=76.5
Q ss_pred cEEEEEecccccCC---HHHHHHHHHHHHhCCC-eEEEEEcCCCCCCCCCCCCchhHHH-hcCCCeEE--EeeccH-HHh
Q 011789 283 SVLYVSFGSYAHVS---KRDLIEIANGIAKSKV-TFIWILRPDIVSSDDPNPLPEDFKK-EVADRSMI--ITWCCQ-TSV 354 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~-~~~~nv~v--~~~~p~-~~l 354 (477)
..+|||-||..... .-...+..+.+.+.|. +.|+.++.+.. -.++.... +..+.+.+ .+|-|- .+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~------~~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP------FFGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc------CCCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 37999999875211 1123456777888876 46677776521 12221111 01123333 457776 467
Q ss_pred hccCCCCccccccCCchhhHHHhcCcceecccc----ccchhhHHHHHHhhhcc
Q 011789 355 LAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL----YTDQFTNRKLAVDDWNV 404 (477)
Q Consensus 355 L~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~ 404 (477)
.+.+++ +|+|+|.||+.|.|..|+|.|+++- -..|-.-|..+++. |.
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gy 128 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GY 128 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-Cc
Confidence 777887 9999999999999999999999995 36788889999888 54
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.25 E-value=5.3e-05 Score=75.14 Aligned_cols=128 Identities=13% Similarity=0.138 Sum_probs=79.2
Q ss_pred CcEEEEEecccc--c-CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc--CCCeEEEeecc---HHH
Q 011789 282 GSVLYVSFGSYA--H-VSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV--ADRSMIITWCC---QTS 353 (477)
Q Consensus 282 ~~~I~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~--~~nv~v~~~~p---~~~ 353 (477)
++.|+|++=... . ...+.+..+++++...+.++++.+..... ....+-+...+.. .+|+.+.+-++ ...
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---GSRIINEAIEEYVNEHPNFRLFKSLGQERYLS 277 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---CchHHHHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 468888875432 2 33567888999998877666666543310 0001111222212 35788887554 445
Q ss_pred hhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceee-ecCCCCcCHHHHHHHHHHHh
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLN-LSNEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-~~~~~~~~~~~l~~~i~~~l 427 (477)
++.++++ +|+-++.|- .||...|+|+|.+- +.+ ...+. |..+. + ..+.++|.+++.+++
T Consensus 278 Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v----g~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 278 LLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV----DPDKEEIVKAIEKLL 337 (365)
T ss_pred HHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe----CCCHHHHHHHHHHHh
Confidence 8999998 998875555 99999999999764 211 11133 33322 3 468899999999854
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.19 E-value=0.0028 Score=65.29 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=74.4
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHHh---CCCeEEEEEcCCCCCCCCCCCCchh---HHHhcCCCeEE-EeeccHH--
Q 011789 282 GSVLYVSFGSYAHVSKRDLIEIANGIAK---SKVTFIWILRPDIVSSDDPNPLPED---FKKEVADRSMI-ITWCCQT-- 352 (477)
Q Consensus 282 ~~~I~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~lp~~---~~~~~~~nv~v-~~~~p~~-- 352 (477)
+.++++..|.+.. .+-+..++++++. .+.++++. |.+. ..+.+. ..++.+.++.+ ..|-...
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~ 351 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGD------PELEEAFRALAARYPGKVGVQIGYDEALAH 351 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence 3467777788753 2223344444433 35666555 3220 011122 22344556654 3553222
Q ss_pred HhhccCCCCcccc---ccCCc-hhhHHHhcCcceeccccc--cchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHH
Q 011789 353 SVLAHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLY--TDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLL 426 (477)
Q Consensus 353 ~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~ 426 (477)
.+++.+++ +|. +-|+| +.+||+++|+|.|+.... .|.-.+...-... +.|..+ +.-++++|.++|.++
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv---~~~d~~~la~~i~~~ 425 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVF---DDFNAEDLLRALRRA 425 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEe---CCCCHHHHHHHHHHH
Confidence 47888887 653 34555 888999999999886432 1211111011334 678888 455889999999998
Q ss_pred hc
Q 011789 427 MG 428 (477)
Q Consensus 427 l~ 428 (477)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 76
No 103
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=0.0007 Score=65.32 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=182.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQ-GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF 86 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (477)
|+||+++..-..|++.- -.|.++|.+| | +|.|++-..-.-. +.|.. . -++...
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~-~~efvGvgG~~m~-aeG~~--------------------s---l~~~~e 54 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYP-DVEFVGVGGEKME-AEGLE--------------------S---LFDMEE 54 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCC-CeEEEEeccHHHH-hccCc--------------------c---ccCHHH
Confidence 67999999989999874 4678888887 4 7777765443211 33221 0 001101
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEE-ecCCCc--chHHHHHHhC--CceEEEecchhHHHHHHhhh
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLI-ADTYFV--WPSKLAKKFG--LYYISFWTESALVFTLYYHL 161 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI-~D~~~~--~~~~~A~~~g--IP~v~~~~~~~~~~~~~~~~ 161 (477)
-...++.+.+..+ .......+++++.+..+ +||++| .|.-.+ ....-.++.| ||.|-+..
T Consensus 55 lsvmGf~EVL~~l-p~llk~~~~~~~~i~~~--kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~------------ 119 (381)
T COG0763 55 LSVMGFVEVLGRL-PRLLKIRRELVRYILAN--KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS------------ 119 (381)
T ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHHHHhc--CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC------------
Confidence 1123334444443 22333445555655554 999988 565333 3333456667 88776522
Q ss_pred hhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHHHHH
Q 011789 162 DLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVTALK 241 (477)
Q Consensus 162 ~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 241 (477)
|.++.++.... ..+. ...|.++ +...+|+..+ .
T Consensus 120 ----------------------PsVWAWr~~Ra--------------~~i~------~~~D~lL--ailPFE~~~y---~ 152 (381)
T COG0763 120 ----------------------PSVWAWRPKRA--------------VKIA------KYVDHLL--AILPFEPAFY---D 152 (381)
T ss_pred ----------------------cceeeechhhH--------------HHHH------HHhhHee--eecCCCHHHH---H
Confidence 12222221110 0111 2233333 2223454422 2
Q ss_pred cc-CCEEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHh-----CCCeEE
Q 011789 242 AK-IPFITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAK-----SKVTFI 315 (477)
Q Consensus 242 ~~-~p~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i 315 (477)
.. .|..|||--+.+.-...+ ..+...+-+....+++++.+-.||-.+.=......+.++... .+.+++
T Consensus 153 k~g~~~~yVGHpl~d~i~~~~------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~v 226 (381)
T COG0763 153 KFGLPCTYVGHPLADEIPLLP------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFV 226 (381)
T ss_pred hcCCCeEEeCChhhhhccccc------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 22 238889976655432111 013333344444566799999999754323334444444433 345676
Q ss_pred EEEcCCCCCCCCCCCCchhHHHhcCCCe-EEEeec-cHH--HhhccCCCCccccccCCchhhHHHhcCcceeccc-cccc
Q 011789 316 WILRPDIVSSDDPNPLPEDFKKEVADRS-MIITWC-CQT--SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFP-LYTD 390 (477)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~nv-~v~~~~-p~~--~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P-~~~D 390 (477)
+-+..... ..+-. +....+. ...-++ ++. +++..+++ .+.-+|-. +.|+..+|+|||+.= ...=
T Consensus 227 lp~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~i 295 (381)
T COG0763 227 LPLVNAKY-----RRIIE---EALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPI 295 (381)
T ss_pred EecCcHHH-----HHHHH---HHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHH
Confidence 65543311 01111 1111121 122222 222 37888887 77777754 579999999998742 1122
Q ss_pred hhhHHHHHHhhhccee-------eecCC--C-CcCHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 011789 391 QFTNRKLAVDDWNVGL-------NLSNE--K-VITKEEVSKNVHLLMGEK-SGAKYRNAAKQVKKAMEYALQPNGSSDKN 459 (477)
Q Consensus 391 Q~~na~~v~~~~G~G~-------~~~~~--~-~~~~~~l~~~i~~~l~~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 459 (477)
-+..++++...|=+++ .+..+ . +.+++.|.+++..++.|+ +...+++...+|.+.++. +++++..
T Consensus 296 t~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~a 371 (381)
T COG0763 296 TYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIA 371 (381)
T ss_pred HHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHH
Confidence 3445556555532221 11000 1 688999999999999987 225566666666666653 5566666
Q ss_pred HHHHHHHH
Q 011789 460 MDQFIKDL 467 (477)
Q Consensus 460 ~~~~~~~~ 467 (477)
.+.+.+.+
T Consensus 372 A~~vl~~~ 379 (381)
T COG0763 372 AQAVLELL 379 (381)
T ss_pred HHHHHHHh
Confidence 66666654
No 104
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.11 E-value=5.2e-05 Score=74.48 Aligned_cols=133 Identities=13% Similarity=0.173 Sum_probs=77.0
Q ss_pred CCCcEEEEEecccccCC-H---HHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccH---
Q 011789 280 PKGSVLYVSFGSYAHVS-K---RDLIEIANGIAKS-KVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQ--- 351 (477)
Q Consensus 280 ~~~~~I~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~--- 351 (477)
.+++.++|++=...+.. + ..+..++.++.+. +.++||.+.+... ....+ ....+++ +|+++.+.+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~---~~~~i-~~~l~~~-~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR---GSDII-IEKLKKY-DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH---HHHHH-HHHHTT--TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch---HHHHH-HHHhccc-CCEEEECCCCHHHH
Confidence 46679999985544444 3 3455566666665 7789998874311 00001 1112233 58999876654
Q ss_pred HHhhccCCCCccccccCCchhh-HHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 352 TSVLAHPAIGGFLTHCGWNSVL-EGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
..+|.++++ +|+..| ++. ||.+.|+|+|.+ -|+-..= ..... |..+.+ ..+.++|.+++++++++.
T Consensus 253 l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRq-e~r~~-~~nvlv----~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 253 LSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQ-EGRER-GSNVLV----GTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-H-HHHHT-TSEEEE----TSSHHHHHHHHHHHHH-H
T ss_pred HHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCH-HHHhh-cceEEe----CCCHHHHHHHHHHHHhCh
Confidence 458999998 999999 566 999999999998 1211111 12233 455555 478999999999999764
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.00 E-value=0.012 Score=58.62 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCeEEEeeccHHH---hhccCCCCccc------cccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecC
Q 011789 341 DRSMIITWCCQTS---VLAHPAIGGFL------THCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSN 410 (477)
Q Consensus 341 ~nv~v~~~~p~~~---lL~~~~~~~~I------tHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~ 410 (477)
+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...++.. +.+...
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~-- 323 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLI-- 323 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEe--
Confidence 6999999998776 68888873332 23343 458999999999998763 2223333 423333
Q ss_pred CCCcCHHHHHHHHHHHhcCC
Q 011789 411 EKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~ 430 (477)
.-+.+++.++|.+++.++
T Consensus 324 --~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 --ADDPEEFVAAIEKALLED 341 (373)
T ss_pred --CCCHHHHHHHHHHHHhcC
Confidence 237999999999987654
No 106
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.0039 Score=60.41 Aligned_cols=326 Identities=12% Similarity=0.131 Sum_probs=174.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCcch--hhhccCCCCCCccccccccCCCCCeEEEecC-CCC
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQG-FTITFVNTHFIH--QQMTKASPEMGSDIFAGVRKSGLDIRYMTLS-DGL 82 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 82 (477)
+|+||+++ +|++=.++-+.+|.+++.+.+ .+..++.+.... ++.... ++...++ +.+
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~------------------le~~~i~~pdy 62 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV------------------LELFGIRKPDY 62 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH------------------HHHhCCCCCCc
Confidence 56677655 688999999999999999997 777777777776 444331 1111222 111
Q ss_pred CCC-CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecC--CCc-chHHHHHHhCCceEEEecchhHHHHHH
Q 011789 83 PLG-FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADT--YFV-WPSKLAKKFGLYYISFWTESALVFTLY 158 (477)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~--~~~-~~~~~A~~~gIP~v~~~~~~~~~~~~~ 158 (477)
... .....++.+.... ....+.+++++. +||+|++.. ... ++..+|....||+.=+--..-+
T Consensus 63 ~L~i~~~~~tl~~~t~~----~i~~~~~vl~~~-----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt----- 128 (383)
T COG0381 63 DLNIMKPGQTLGEITGN----IIEGLSKVLEEE-----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT----- 128 (383)
T ss_pred chhccccCCCHHHHHHH----HHHHHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc-----
Confidence 111 2233444444433 344566777765 999998644 333 5577889999998765111000
Q ss_pred hhhhhhhhcCCcCCCCCCCCcccccCCCCCCCCCCCccccccCCCchhHHHHHHHHhhhccCCcEEEEcchhhccHHHHH
Q 011789 159 YHLDLLTINGHFQCYDCREDTIDYIPGVKAINPKDTTSYLQETDTTSACHQIIFNSFQDTRNADYVLCNTVHELESEAVT 238 (477)
Q Consensus 159 ~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~ 238 (477)
. . .++| ..+.+.+.. .-+++.++++--. .-.
T Consensus 129 --------------~-----~-~~~P--------------------EE~NR~l~~-----~~S~~hfapte~a----r~n 159 (383)
T COG0381 129 --------------G-----D-LYFP--------------------EEINRRLTS-----HLSDLHFAPTEIA----RKN 159 (383)
T ss_pred --------------C-----C-CCCc--------------------HHHHHHHHH-----HhhhhhcCChHHH----HHH
Confidence 0 0 0111 001111110 1112222222111 111
Q ss_pred HHHccCC---EEEeCccCCCCCCccccccccCCccccchh-hccCCCCcEEEEEecccccCCHHHHHHHHHH----HHhC
Q 011789 239 ALKAKIP---FITMGPISLNKFSDRVVATSLWSESDCSQW-LDKQPKGSVLYVSFGSYAHVSKRDLIEIANG----IAKS 310 (477)
Q Consensus 239 ~~~~~~p---~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a----l~~~ 310 (477)
+.+...| ++.+|--..+.-.... . ..-...+.... ++. ..+..|++|+=-..+.. +.+..+.++ .+..
T Consensus 160 Ll~EG~~~~~IfvtGnt~iDal~~~~-~-~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~ 235 (383)
T COG0381 160 LLREGVPEKRIFVTGNTVIDALLNTR-D-RVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY 235 (383)
T ss_pred HHHcCCCccceEEeCChHHHHHHHHH-h-hhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC
Confidence 2223322 5555543322100000 0 00000111111 222 23458888875444433 334444444 3444
Q ss_pred CCeEEEEEcCCCCCCCCCCCCchhH-HHhcC--CCeEEEe---eccHHHhhccCCCCccccccCCchhhHHHhcCcceec
Q 011789 311 KVTFIWILRPDIVSSDDPNPLPEDF-KKEVA--DRSMIIT---WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLC 384 (477)
Q Consensus 311 ~~~~i~~~~~~~~~~~~~~~lp~~~-~~~~~--~nv~v~~---~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 384 (477)
..+.+++..+.. ..+ ..+ .+.+. +|+++.+ |.+...++.++-+ ++|-.|. -.-||-..|+|+++
T Consensus 236 -~~~~viyp~H~~-----~~v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~ 305 (383)
T COG0381 236 -PDVIVIYPVHPR-----PRV-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLV 305 (383)
T ss_pred -CCceEEEeCCCC-----hhh-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEe
Confidence 344455554421 111 111 13333 3577764 6788899999987 8887763 46799999999999
Q ss_pred cccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHH
Q 011789 385 FPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAK 440 (477)
Q Consensus 385 ~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~ 440 (477)
+=...++|. ..+. |.-+.+ ..+.+.+.+++.++++++ +..+|..
T Consensus 306 lR~~TERPE----~v~a-gt~~lv----g~~~~~i~~~~~~ll~~~---~~~~~m~ 349 (383)
T COG0381 306 LRDTTERPE----GVEA-GTNILV----GTDEENILDAATELLEDE---EFYERMS 349 (383)
T ss_pred eccCCCCcc----ceec-CceEEe----CccHHHHHHHHHHHhhCh---HHHHHHh
Confidence 999999987 2344 555555 567799999999999988 6665433
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.98 E-value=0.0024 Score=66.04 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=89.1
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHh----CCCeEEEEEcCCCCCCCCCCCCchhHHH---h--cCCCeEEEeeccHHH
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAK----SKVTFIWILRPDIVSSDDPNPLPEDFKK---E--VADRSMIITWCCQTS 353 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~--~~~nv~v~~~~p~~~ 353 (477)
+.++++.|.+.. .+.+..+++|+.. .+.--+..+|.+. ..+.+++ . +.++|...++.+..+
T Consensus 319 ~~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~--------~~~~l~~~i~~~~l~~~V~f~G~~~~~~ 388 (500)
T TIGR02918 319 PFSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFDIYGEGG--------EKQKLQKIINENQAQDYIHLKGHRNLSE 388 (500)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEECch--------hHHHHHHHHHHcCCCCeEEEcCCCCHHH
Confidence 356777788753 2334445555433 2222233445431 1122322 2 246788888888788
Q ss_pred hhccCCCCcccc---ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-CcC----HHHHHHHHH
Q 011789 354 VLAHPAIGGFLT---HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VIT----KEEVSKNVH 424 (477)
Q Consensus 354 lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~----~~~l~~~i~ 424 (477)
++..+++ +|. .-|+ .++.||+++|+|+|+.-.. ..+...++.. .-|..+..++ .-+ .+.|+++|.
T Consensus 389 ~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~ 462 (500)
T TIGR02918 389 VYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIV 462 (500)
T ss_pred HHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHH
Confidence 9999988 554 3444 5899999999999985431 1345556555 5677773111 112 788999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHH
Q 011789 425 LLMGEKSGAKYRNAAKQVKKAME 447 (477)
Q Consensus 425 ~~l~~~~~~~~~~~a~~l~~~~~ 447 (477)
++++++....+.+++.+.++.+.
T Consensus 463 ~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 463 EYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHhChHHHHHHHHHHHHHHHhcC
Confidence 99965433556677766655544
No 108
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.96 E-value=0.00053 Score=69.24 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=93.9
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHHh---C--CCeEEEEEcCCCCCCCCCCCCchhHHHh-----cCCCeEEEeeccH
Q 011789 282 GSVLYVSFGSYAHVSKRDLIEIANGIAK---S--KVTFIWILRPDIVSSDDPNPLPEDFKKE-----VADRSMIITWCCQ 351 (477)
Q Consensus 282 ~~~I~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~-----~~~nv~v~~~~p~ 351 (477)
++..++++|.+.... .+..+++++.. . +..+.|.+-+++. ..+.+++. ..++|.+.+|+++
T Consensus 229 ~~~~il~~Grl~~~K--g~~~li~a~~~l~~~~p~~~l~~~iiG~g~-------~~~~l~~~~~~~~~~~~V~f~G~v~~ 299 (407)
T cd04946 229 DTLRIVSCSYLVPVK--RVDLIIKALAALAKARPSIKIKWTHIGGGP-------LEDTLKELAESKPENISVNFTGELSN 299 (407)
T ss_pred CCEEEEEeecccccc--CHHHHHHHHHHHHHhCCCceEEEEEEeCch-------HHHHHHHHHHhcCCCceEEEecCCCh
Confidence 346677788875322 23334444433 2 2456665444321 11222221 1356888899997
Q ss_pred HH---hhccCCCCcccccc---C-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-CcCHHHHHHHH
Q 011789 352 TS---VLAHPAIGGFLTHC---G-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-VITKEEVSKNV 423 (477)
Q Consensus 352 ~~---lL~~~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~l~~~i 423 (477)
.+ ++..+++.+||... | -++++||+++|+|+|+. |.......+.+. +.|..+ . ..+.+++.++|
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~-~~G~l~---~~~~~~~~la~~I 371 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNG-GNGLLL---SKDPTPNELVSSL 371 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCC-CcEEEe---CCCCCHHHHHHHH
Confidence 75 45443333366443 2 35899999999999984 445566677666 689888 5 56889999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 011789 424 HLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 424 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 464 (477)
.++++|+ +.+++. ++..++..++.-+.+...++|+
T Consensus 372 ~~ll~~~---~~~~~m---~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 372 SKFIDNE---EEYQTM---REKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHhCH---HHHHHH---HHHHHHHHHHHcCHHHhHHHhc
Confidence 9999987 433322 2222222223445555665554
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.94 E-value=0.014 Score=60.26 Aligned_cols=133 Identities=8% Similarity=0.042 Sum_probs=74.4
Q ss_pred cEEEEEecccccC-CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchh---HHHhcCCCeEEEeeccHH---Hhh
Q 011789 283 SVLYVSFGSYAHV-SKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPED---FKKEVADRSMIITWCCQT---SVL 355 (477)
Q Consensus 283 ~~I~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~---~~~~~~~nv~v~~~~p~~---~lL 355 (477)
.++++..|.+... ....+...+..+.+.+.++++. |... ....+. +.++.+.++.+....+.. .++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 4667777887532 2223333333333345555443 3320 011122 223455677776655554 478
Q ss_pred ccCCCCcccc---ccCCc-hhhHHHhcCcceecccccc--chhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhc
Q 011789 356 AHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLYT--DQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 356 ~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~ 428 (477)
+.+++ +|. +-|+| +.+||+++|+|+|+....+ |.-.+...-... +.|..+ +.-+++++.++|.+++.
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~---~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLF---EEYDPGALLAALSRALR 436 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEe---CCCCHHHHHHHHHHHHH
Confidence 88887 553 23554 7889999999999865421 211111000233 578887 45688999999999886
No 110
>PLN02316 synthase/transferase
Probab=97.92 E-value=0.018 Score=63.63 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCCeEEEeeccHH---HhhccCCCCccccc---cCC-chhhHHHhcCcceecccccc--chhhH-------HHHHHhhhc
Q 011789 340 ADRSMIITWCCQT---SVLAHPAIGGFLTH---CGW-NSVLEGLWCGVPLLCFPLYT--DQFTN-------RKLAVDDWN 403 (477)
Q Consensus 340 ~~nv~v~~~~p~~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G 403 (477)
+++|.+....+.. .+++.+++ ||.- =|. -+.+||+++|+|.|+....+ |.-.. +...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4567666544443 58888887 7742 333 48899999999888754421 21111 1111112 4
Q ss_pred ceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 404 VGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 404 ~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
-|... +..+++.|..+|.+++.+ |.+....+++..+..+...-+-....++.++..+
T Consensus 976 tGflf---~~~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 976 NGFSF---DGADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred ceEEe---CCCCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 67777 466889999999999864 2223333344444333233343444444444443
No 111
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.89 E-value=0.018 Score=59.48 Aligned_cols=130 Identities=9% Similarity=0.082 Sum_probs=73.4
Q ss_pred CcEEEEEecccccCC-HHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhH---HHhcCCCeEEEeeccHH---Hh
Q 011789 282 GSVLYVSFGSYAHVS-KRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDF---KKEVADRSMIITWCCQT---SV 354 (477)
Q Consensus 282 ~~~I~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~---~~~~~~nv~v~~~~p~~---~l 354 (477)
+.++++..|.+.... ...+...+..+.+.+.++++.-.+. ..+.+.+ .++.++|+.+....++. .+
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-------PEYEEALRELAARYPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 346677778875322 2333333333334455554443221 1111222 22335677765444443 37
Q ss_pred hccCCCCccccc---cCCc-hhhHHHhcCcceeccccccchhhHHHHHH------hhhcceeeecCCCCcCHHHHHHHHH
Q 011789 355 LAHPAIGGFLTH---CGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAV------DDWNVGLNLSNEKVITKEEVSKNVH 424 (477)
Q Consensus 355 L~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~------~~~G~G~~~~~~~~~~~~~l~~~i~ 424 (477)
++.+++ ++.- -|.| +.+||+++|+|+|+.... .....+. +. |.|..+ +..+.+++.+++.
T Consensus 368 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~g----g~~e~v~~~~~~~~~-~~G~~~---~~~~~~~l~~~i~ 437 (476)
T cd03791 368 YAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATG----GLADTVIDYNEDTGE-GTGFVF---EGYNADALLAALR 437 (476)
T ss_pred HHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCC----CccceEeCCcCCCCC-CCeEEe---CCCCHHHHHHHHH
Confidence 788887 5532 2333 678999999999876542 2222222 34 588888 5557899999999
Q ss_pred HHhc
Q 011789 425 LLMG 428 (477)
Q Consensus 425 ~~l~ 428 (477)
++++
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9885
No 112
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.89 E-value=0.00072 Score=67.26 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCeEEEeeccHH-HhhccCCCCcccccc-C-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCH
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLTHC-G-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITK 416 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~ItHg-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 416 (477)
++++.+.++.++. .++..+++-++.++. | ..++.||+++|+|+|+..... .....++.. ..|..+ +.-+.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv---~~~d~ 332 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLV---PKGDI 332 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEe---CCCcH
Confidence 4677777776665 489999984455543 3 458999999999999854321 244556666 788888 45589
Q ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHHH
Q 011789 417 EEVSKNVHLLMGEKSG-AKYRNAAKQVKKAME 447 (477)
Q Consensus 417 ~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~ 447 (477)
+++.++|.++++|++- +++.+++.+.++++.
T Consensus 333 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 333 EALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998732 456666666555544
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.86 E-value=0.00036 Score=70.02 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc------CCCeEEEeeccHHH-
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV------ADRSMIITWCCQTS- 353 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~------~~nv~v~~~~p~~~- 353 (477)
++.++|.+|.+....+++.+....+-|+..+.-.+|....... -.+.+.+.. ++++.+.++.|+.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-------GEARLRRRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-------HHHHHHHHHHHTTS-GGGEEEEE---HHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-------HHHHHHHHHHHcCCChhhEEEcCCCCHHHH
Confidence 4569999999999999999999999999999999998764411 112222221 25777777777655
Q ss_pred --hhccCCCCccc---cccCCchhhHHHhcCcceecccc-ccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHh
Q 011789 354 --VLAHPAIGGFL---THCGWNSVLEGLWCGVPLLCFPL-YTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 354 --lL~~~~~~~~I---tHgG~gs~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l 427 (477)
.+..+++ ++ ..+|.+|++|||+.|||+|.+|- ..=...-+..+..+ |+.-.+. .+.++..+.--++-
T Consensus 356 l~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA----~s~~eYv~~Av~La 428 (468)
T PF13844_consen 356 LRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIA----DSEEEYVEIAVRLA 428 (468)
T ss_dssp HHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-----SSHHHHHHHHHHHH
T ss_pred HHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcC----CCHHHHHHHHHHHh
Confidence 4455665 43 56899999999999999999994 23344556677788 8887773 35555555555666
Q ss_pred cCCchHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh
Q 011789 428 GEKSGAKYRNAA-KQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQ 472 (477)
Q Consensus 428 ~~~~~~~~~~~a-~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 472 (477)
+|+ +++++. +++.+.+.. +.--+...+.+.+++..+
T Consensus 429 ~D~---~~l~~lR~~Lr~~~~~------SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 429 TDP---ERLRALRAKLRDRRSK------SPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp H-H---HHHHHHHHHHHHHHHH------SGGG-HHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHH
Confidence 676 444332 223333332 334456666666665543
No 114
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.86 E-value=8.6e-05 Score=73.31 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=87.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHH---hhccCCCC
Q 011789 285 LYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTS---VLAHPAIG 361 (477)
Q Consensus 285 I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~---lL~~~~~~ 361 (477)
.++..|++.. .+....++++++..+.++++. |.+ ...+.+++...+||.+.+++|+.+ ++..+++-
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g--------~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~ 265 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDG--------PELDRLRAKAGPNVTFLGRVSDEELRDLYARARAF 265 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECC--------hhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEE
Confidence 4556777652 334566778888777665554 332 112344445678999999999854 78889983
Q ss_pred ccccccCCc-hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 362 GFLTHCGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 362 ~~ItHgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
++-+.-|.| ++.||+++|+|+|+... ......+++. +.|..+ +.-+.+.+.++|.++++|+
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~----~~~~e~i~~~-~~G~~~---~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGK----GGALETVIDG-VTGILF---EEQTVESLAAAVERFEKNE 327 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCC----CCCcceeeCC-CCEEEe---CCCCHHHHHHHHHHHHhCc
Confidence 333444544 57899999999999654 3344556666 788888 4458888999999999887
No 115
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.82 E-value=0.0011 Score=66.23 Aligned_cols=84 Identities=11% Similarity=0.220 Sum_probs=62.9
Q ss_pred hcCCCeEEEeeccHHH---hhccCCCCccccc----cCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeec
Q 011789 338 EVADRSMIITWCCQTS---VLAHPAIGGFLTH----CGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLS 409 (477)
Q Consensus 338 ~~~~nv~v~~~~p~~~---lL~~~~~~~~ItH----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~ 409 (477)
+...++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe
Confidence 3456888889998654 6899998 5532 444 577899999999998654 3455666666 6787551
Q ss_pred CCCCcCHHHHHHHHHHHhcCC
Q 011789 410 NEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 410 ~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+..+.+++.++|.++++|+
T Consensus 327 --~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADP 345 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCH
Confidence 2568999999999999998
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.82 E-value=0.011 Score=59.47 Aligned_cols=115 Identities=9% Similarity=-0.037 Sum_probs=66.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCeE-EEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeec-cH---HHhhccC
Q 011789 284 VLYVSFGSYAHVSKRDLIEIANGIAKSKVTF-IWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWC-CQ---TSVLAHP 358 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~-p~---~~lL~~~ 358 (477)
.+++..|.......+....+++|+...+..+ ++.+|.... .. ..++...++. ++ .++++.+
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~------~~--------~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP------FT--------AGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc------cc--------ccceEEecCcCCHHHHHHHHHhC
Confidence 3444455532223344567888887765443 444553211 01 2355555654 33 2366667
Q ss_pred CCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHH
Q 011789 359 AIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNV 423 (477)
Q Consensus 359 ~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i 423 (477)
++ ||.- |--.++.||+++|+|+|+....+ ... +... +-|..+ +.-+.+.|++++
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv---~~~d~~~La~~~ 365 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTV---SEEEVLQLAQLS 365 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEE---CCCCHHHHHhcc
Confidence 87 6643 23468999999999999976543 323 3345 678888 544778888654
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00037 Score=56.43 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=71.7
Q ss_pred EEEEecccccCCHHHHHH--HHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEee--cc-HHHhhccCC
Q 011789 285 LYVSFGSYAHVSKRDLIE--IANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITW--CC-QTSVLAHPA 359 (477)
Q Consensus 285 I~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~--~p-~~~lL~~~~ 359 (477)
||||.||....-.+.+.. +.+-.+.-..++|+.+|... ..|= ...++.+| -+ -+++...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-------~kpv-------agl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD-------IKPV-------AGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC-------cccc-------cccEEEeechHHHHHHHhhcce
Confidence 789999985322222221 33333335567899998752 2320 11345554 34 345777777
Q ss_pred CCccccccCCchhhHHHhcCcceecccccc--------chhhHHHHHHhhhcceeee
Q 011789 360 IGGFLTHCGWNSVLEGLWCGVPLLCFPLYT--------DQFTNRKLAVDDWNVGLNL 408 (477)
Q Consensus 360 ~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~~ 408 (477)
+ +|+|+|.||+..++.-++|.+++|--. .|-.-|..+.+. +.=+..
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~ 121 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVAC 121 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEE
Confidence 6 999999999999999999999999532 577888888888 665555
No 118
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.69 E-value=0.015 Score=60.01 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCeEEEeeccHHHhhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhh-----cceeeecC
Q 011789 340 ADRSMIITWCCQTSVLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDW-----NVGLNLSN 410 (477)
Q Consensus 340 ~~nv~v~~~~p~~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-----G~G~~~~~ 410 (477)
.+||.+.+...-.++++.+++ +|.- |--.++.||+++|+|+|+. |.......++... ..|..+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv-- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVV-- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEE--
Confidence 468888885555678888887 5432 3346899999999999984 5555566666620 267777
Q ss_pred CCCcCHHHHHHHHHHHhcCC
Q 011789 411 EKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 411 ~~~~~~~~l~~~i~~~l~~~ 430 (477)
+..+.+++.++|.++++|+
T Consensus 425 -~~~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 425 -PPADPEALARAILRLLKDP 443 (475)
T ss_pred -CCCCHHHHHHHHHHHhcCH
Confidence 4568999999999999987
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.69 E-value=0.016 Score=60.74 Aligned_cols=76 Identities=13% Similarity=0.046 Sum_probs=52.3
Q ss_pred CeEEEeeccHH-HhhccCCCCcccc---ccC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCH
Q 011789 342 RSMIITWCCQT-SVLAHPAIGGFLT---HCG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITK 416 (477)
Q Consensus 342 nv~v~~~~p~~-~lL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 416 (477)
++.+.++.++. .+++.+++ ||. +=| -.++.||+++|+|+|+.-..... . +..- +-|. + .-+.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g-~nGl-l----~~D~ 668 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRSF-PNCL-T----YKTS 668 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Eeec-CCeE-e----cCCH
Confidence 35556677765 48998887 765 233 46899999999999997654322 1 2222 2333 3 1478
Q ss_pred HHHHHHHHHHhcCC
Q 011789 417 EEVSKNVHLLMGEK 430 (477)
Q Consensus 417 ~~l~~~i~~~l~~~ 430 (477)
+++.++|.++|+|+
T Consensus 669 EafAeAI~~LLsd~ 682 (794)
T PLN02501 669 EDFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999987
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.67 E-value=0.00029 Score=61.73 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=68.8
Q ss_pred cCCCeEEEeeccHH---HhhccCCCCccccc----cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCC
Q 011789 339 VADRSMIITWCCQT---SVLAHPAIGGFLTH----CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNE 411 (477)
Q Consensus 339 ~~~nv~v~~~~p~~---~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 411 (477)
..+++.+..++++. .++..+++ +|+. |...++.||+++|+|+|+ .|...+...+... +.|..+
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~--- 140 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLF--- 140 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEE---
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccc-cceEEe---
Confidence 34789999998833 48888887 7765 556799999999999997 5677778888888 889999
Q ss_pred CCcCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011789 412 KVITKEEVSKNVHLLMGEKSGAKYRNAAKQ 441 (477)
Q Consensus 412 ~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~ 441 (477)
+..+.+++.++|.++++|+ +++++..+
T Consensus 141 ~~~~~~~l~~~i~~~l~~~---~~~~~l~~ 167 (172)
T PF00534_consen 141 DPNDIEELADAIEKLLNDP---ELRQKLGK 167 (172)
T ss_dssp STTSHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCH---HHHHHHHH
Confidence 6449999999999999887 44444433
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.48 E-value=0.11 Score=53.66 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCCeEEEeeccHH-HhhccCCCCcccc---ccCC-chhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLT---HCGW-NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.++|.+.+|..+. .+|..+++ ||. +-|+ +++.||+++|+|+|+.. -..+...+.+. ..|..+ +.-
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATd----vGG~~EiV~dG-~nG~LV---p~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTP----AGGSAECFIEG-VSGFIL---DDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeC----CCCcHHHcccC-CcEEEE---CCC
Confidence 4788888886554 48899998 764 3454 59999999999999754 35667777777 789888 433
Q ss_pred CHHHHHHHH
Q 011789 415 TKEEVSKNV 423 (477)
Q Consensus 415 ~~~~l~~~i 423 (477)
+.+.+.+++
T Consensus 524 D~~aLa~ai 532 (578)
T PRK15490 524 QTVNLDQAC 532 (578)
T ss_pred ChhhHHHHH
Confidence 444555544
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.31 E-value=0.24 Score=50.04 Aligned_cols=178 Identities=10% Similarity=0.147 Sum_probs=100.0
Q ss_pred chhhccCCCCcEEEEEeccccc------CC-H---HHHHHHHHHHHhCCCeEEEEEcCCCCCC--CCCCCCchhHHHhcC
Q 011789 273 SQWLDKQPKGSVLYVSFGSYAH------VS-K---RDLIEIANGIAKSKVTFIWILRPDIVSS--DDPNPLPEDFKKEVA 340 (477)
Q Consensus 273 ~~~l~~~~~~~~I~vs~Gs~~~------~~-~---~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~~~lp~~~~~~~~ 340 (477)
..|+...+++++|-|+...... .. . ..+..+++.+...|+++++.---..... .+.........+.+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 3455443445688888765431 11 1 2344455656667888776532211000 000111123333433
Q ss_pred --CCeEEE-e-eccHH--HhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC--
Q 011789 341 --DRSMII-T-WCCQT--SVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-- 412 (477)
Q Consensus 341 --~nv~v~-~-~~p~~--~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-- 412 (477)
+++++. . +-|.+ .++++|++ +|..= +=++.-|+..|||.+.+++ | +-....++.. |...... +
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~--~~~ 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAI--DIR 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEe--chh
Confidence 334443 2 33443 68888886 66533 3356668899999999997 3 4555555777 8876521 4
Q ss_pred CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 413 VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
+++.++|.+.+.++++|. +++++..++--++++. .+.+.+.++++++
T Consensus 376 ~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred hCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 889999999999999884 1466655555555543 2234555555544
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.25 E-value=0.0016 Score=63.90 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCeEEEeeccHHHh---hccCCCCcccccc-------CC------chhhHHHhcCcceeccccccchhhHHHHHHhhhc
Q 011789 340 ADRSMIITWCCQTSV---LAHPAIGGFLTHC-------GW------NSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWN 403 (477)
Q Consensus 340 ~~nv~v~~~~p~~~l---L~~~~~~~~ItHg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 403 (477)
.+||...+|+|+.++ |.. +.+++...- .+ +-+.+.+++|+|+|+ .++...+..+++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~----~~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV----WSKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE----CCCccHHHHHHhC-C
Confidence 469999999999875 444 443333211 11 126778999999998 4567888999999 9
Q ss_pred ceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 011789 404 VGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIK 465 (477)
Q Consensus 404 ~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 465 (477)
+|+.+ + +.+++.+++..+. +++.+.|++|+++++++++. |.--.+.+++++.
T Consensus 280 ~G~~v---~--~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVV---D--SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEe---C--CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99999 3 6678999998754 34345799999999999996 6666666666554
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.12 E-value=0.0011 Score=55.38 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=50.8
Q ss_pred CCCeEEEeeccHH-HhhccCCCCccccc--cC-CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcC
Q 011789 340 ADRSMIITWCCQT-SVLAHPAIGGFLTH--CG-WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVIT 415 (477)
Q Consensus 340 ~~nv~v~~~~p~~-~lL~~~~~~~~ItH--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 415 (477)
.+||.+.+|++.. ++++.+++.+..+. .| -+++.|++++|+|+|+.+. ......+.. +.|..+ .-+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~----~~~ 121 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV----AND 121 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-----TT-
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE----CCC
Confidence 3599999998655 38899998555442 23 4899999999999999775 133344446 788777 248
Q ss_pred HHHHHHHHHHHhcC
Q 011789 416 KEEVSKNVHLLMGE 429 (477)
Q Consensus 416 ~~~l~~~i~~~l~~ 429 (477)
.+++.++|.++++|
T Consensus 122 ~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 122 PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999875
No 125
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.74 E-value=0.0045 Score=48.32 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred cccchhhccCCCCcEEEEEecccccC---CH--HHHHHHHHHHHhCCCeEEEEEcCCC
Q 011789 270 SDCSQWLDKQPKGSVLYVSFGSYAHV---SK--RDLIEIANGIAKSKVTFIWILRPDI 322 (477)
Q Consensus 270 ~~l~~~l~~~~~~~~I~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~ 322 (477)
..+..|+.+.+.++.|+||+||.... .. ..+..++++++..+..+|.++....
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 56677999988999999999997532 22 4688999999999999999998663
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=96.47 E-value=0.022 Score=55.43 Aligned_cols=102 Identities=12% Similarity=0.139 Sum_probs=63.9
Q ss_pred cCCCeEEEe---eccHH---HhhccCCCCccccc---cCC-chhhHHHhcCcceecccc------ccch------hhHHH
Q 011789 339 VADRSMIIT---WCCQT---SVLAHPAIGGFLTH---CGW-NSVLEGLWCGVPLLCFPL------YTDQ------FTNRK 396 (477)
Q Consensus 339 ~~~nv~v~~---~~p~~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 396 (477)
++++|.+.. ++++. .+++.+++ ||.- =|+ .++.||+++|+|+|+.-. ..|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 456888874 45554 47888887 6653 354 478899999999998633 2332 23333
Q ss_pred HHH--hhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011789 397 LAV--DDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAM 446 (477)
Q Consensus 397 ~v~--~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~ 446 (477)
... .. |.|..+ +..+++++.++|.+++...+.+....++++.++++
T Consensus 277 ~~~~~~~-g~g~~~---~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEH-GQKWKI---HKFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCccc-Cceeee---cCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 323 34 677777 47899999999999854331112333444444444
No 127
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.43 E-value=0.18 Score=45.47 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCeEEEeeccH-H--H-hhccCCCCccccccC----CchhhHHHhcCcceecccccc
Q 011789 340 ADRSMIITWCCQ-T--S-VLAHPAIGGFLTHCG----WNSVLEGLWCGVPLLCFPLYT 389 (477)
Q Consensus 340 ~~nv~v~~~~p~-~--~-lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~ 389 (477)
..|+.+.++++. . . ++..+++ +|+-.. .+++.||+.+|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 468888887632 2 2 4444777 776665 689999999999999987644
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.20 E-value=0.073 Score=44.53 Aligned_cols=101 Identities=11% Similarity=0.094 Sum_probs=63.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRS 89 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (477)
||++++.....| ...+++.|.++||+|++++.....+.... . +++.+..++....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-~---------------~~i~~~~~~~~~k------ 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-I---------------EGIKVIRLPSPRK------ 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-h---------------CCeEEEEecCCCC------
Confidence 578888777666 45779999999999999999555422211 1 1677777753211
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc---chHHHHHHhC-CceEEE
Q 011789 90 LNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV---WPSKLAKKFG-LYYISF 147 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~---~~~~~A~~~g-IP~v~~ 147 (477)
....++. + . .+..++++. +||+|.+..... .+..+++..| +|++..
T Consensus 56 -~~~~~~~-~----~-~l~k~ik~~-----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 -SPLNYIK-Y----F-RLRKIIKKE-----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred -ccHHHHH-H----H-HHHHHhccC-----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1112221 1 1 344555554 999998876543 2444667888 888865
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.20 E-value=0.66 Score=43.77 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=65.8
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHH
Q 011789 17 PLQGHVNPSVQLALKLASQGFTITFVNTHFI--HQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHE 93 (477)
Q Consensus 17 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (477)
+-.-|+.-+-.|.++|..+||+|.+-+-... .+.+ .. |+.+..+-.. ....+.
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y------------------gf~~~~Igk~------g~~tl~ 63 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY------------------GFPYKSIGKH------GGVTLK 63 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh------------------CCCeEeeccc------CCccHH
Confidence 3446888899999999999999988764433 3444 34 5556555421 112233
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 94 QFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 94 ~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
+.+.....+ .-.+.++..+. +||+.+. -..+.+..+|--+|+|.+.+.-
T Consensus 64 ~Kl~~~~eR-~~~L~ki~~~~-----kpdv~i~-~~s~~l~rvafgLg~psIi~~D 112 (346)
T COG1817 64 EKLLESAER-VYKLSKIIAEF-----KPDVAIG-KHSPELPRVAFGLGIPSIIFVD 112 (346)
T ss_pred HHHHHHHHH-HHHHHHHHhhc-----CCceEee-cCCcchhhHHhhcCCceEEecC
Confidence 222222111 22244444444 9999999 4577899999999999999844
No 130
>PRK14098 glycogen synthase; Provisional
Probab=96.12 E-value=0.16 Score=52.51 Aligned_cols=164 Identities=9% Similarity=0.092 Sum_probs=89.8
Q ss_pred cEEEEEecccccCC-HHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchh---HHHhcCCCeEEEeeccHH---Hhh
Q 011789 283 SVLYVSFGSYAHVS-KRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPED---FKKEVADRSMIITWCCQT---SVL 355 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~---~~~~~~~nv~v~~~~p~~---~lL 355 (477)
.++++..|.+.... ...+...+..+...+.++++. |.+. ...-+. +.++.+++|.+..+++.. .++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH
Confidence 45667778775322 233333333333345555443 4321 011122 223456788888888765 488
Q ss_pred ccCCCCcccccc---CCc-hhhHHHhcCcceecccccc--chhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHh--
Q 011789 356 AHPAIGGFLTHC---GWN-SVLEGLWCGVPLLCFPLYT--DQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLM-- 427 (477)
Q Consensus 356 ~~~~~~~~ItHg---G~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l-- 427 (477)
+.+++ |+.-. |.| +.+||+++|+|.|+....+ |.-. ...+.. +.|... +..+++.|.++|.+++
T Consensus 380 a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~---~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 380 AGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIF---HDYTPEALVAKLGEALAL 451 (489)
T ss_pred HhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEe---CCCCHHHHHHHHHHHHHH
Confidence 88998 66432 333 6789999999888765422 2111 011124 678888 5568899999999876
Q ss_pred -cCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 011789 428 -GEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTR 470 (477)
Q Consensus 428 -~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 470 (477)
+|+ +.. +++++ .+++..-+-+...+++++..++.
T Consensus 452 ~~~~---~~~---~~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 452 YHDE---ERW---EELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HcCH---HHH---HHHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 343 222 22222 22223445455666666655543
No 131
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.06 E-value=0.55 Score=45.58 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=40.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhcc
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTK 53 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~ 53 (477)
||+++-....|++.-+.++.++|+++ +.+|++++.+.+.+.+..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 68999999999999999999999998 899999999999887743
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.12 Score=52.43 Aligned_cols=132 Identities=15% Similarity=0.246 Sum_probs=88.4
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc------CCCeEEEeeccHHH
Q 011789 280 PKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV------ADRSMIITWCCQTS 353 (477)
Q Consensus 280 ~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~------~~nv~v~~~~p~~~ 353 (477)
+++-+||+||+..+...++.+..-+.-++..+.-++|..+++.. ..+-..++... .++.++.+-.|...
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----AEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----HHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 35569999999999999999999888889999999999887521 12222222111 14566666555444
Q ss_pred ---hhccCCCCccc---cccCCchhhHHHhcCcceeccccccchhh--HHH-HHHhhhcceeeecCCCCcCHHHHHHHHH
Q 011789 354 ---VLAHPAIGGFL---THCGWNSVLEGLWCGVPLLCFPLYTDQFT--NRK-LAVDDWNVGLNLSNEKVITKEEVSKNVH 424 (477)
Q Consensus 354 ---lL~~~~~~~~I---tHgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~-~v~~~~G~G~~~~~~~~~~~~~l~~~i~ 424 (477)
=+..+++ |+ --||..|..|+|..|||+|..+ ++||- |+. .+..+ |+-..+. .-..+-++.++.
T Consensus 502 h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA---~s~~dYV~~av~ 573 (620)
T COG3914 502 HRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVA---DSRADYVEKAVA 573 (620)
T ss_pred HHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhc---CCHHHHHHHHHH
Confidence 3444555 55 4699999999999999999987 78864 333 34445 6655553 224445665553
No 133
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.62 E-value=0.1 Score=40.19 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=52.9
Q ss_pred ccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 011789 366 HCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKA 445 (477)
Q Consensus 366 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~ 445 (477)
+|-..-+.|++++|+|+|+-+. ......+..- --++.. + +.+++.+++..+++|+ ..+++..+-+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~-~~~~~~----~-~~~el~~~i~~ll~~~---~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDG-EHIITY----N-DPEELAEKIEYLLENP---EERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCC-CeEEEE----C-CHHHHHHHHHHHHCCH---HHHHHHHHHHHH
Confidence 4556689999999999998654 3333333222 234444 3 9999999999999998 544444433333
Q ss_pred HHHHhcCCCchHHHHHHHH
Q 011789 446 MEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 446 ~~~~~~~gg~~~~~~~~~~ 464 (477)
... ..-+-.+.+++|+
T Consensus 76 ~v~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVL---KRHTWEHRAEQIL 91 (92)
T ss_pred HHH---HhCCHHHHHHHHH
Confidence 332 2555566666654
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=95.48 E-value=0.31 Score=47.67 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=61.4
Q ss_pred eeccHHH---hhccCCCCccc--c-ccC-CchhhHHHhcCcceecccccc--chh---hHHHHHHh-----------hhc
Q 011789 347 TWCCQTS---VLAHPAIGGFL--T-HCG-WNSVLEGLWCGVPLLCFPLYT--DQF---TNRKLAVD-----------DWN 403 (477)
Q Consensus 347 ~~~p~~~---lL~~~~~~~~I--t-HgG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~~v~~-----------~~G 403 (477)
.++|+.+ +++.+++ +| + ..| -.++.||+++|+|+|+.-..+ |.- .|+..+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 3466554 6888888 54 2 333 358999999999999965432 211 11111110 1 3
Q ss_pred ceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 404 VGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 404 ~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
+|..+ ..+.+++.+++.++|.|++-+.++++...-+....+ .-+-++..+++.+.++
T Consensus 273 ~G~~v----~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFL----DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccc----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 45555 346788888888888863111444444443333332 3444455555555443
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.47 E-value=0.19 Score=51.40 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=87.1
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHH---hc---CCCeEEEeeccHHH-
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKK---EV---ADRSMIITWCCQTS- 353 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~---~~nv~v~~~~p~~~- 353 (477)
++-+||.+|--...++++.++..++-|+..+.-++|.+...-. +. ..|+. +. +++|.+.+-+.-.+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-----ge--~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-----GE--QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-----ch--HHHHHHHHHhCCCccceeeccccchHHH
Confidence 4568999999888999999999999999999999999876522 11 22221 11 24555544333333
Q ss_pred ----hhccCCCCccccccCCchhhHHHhcCcceeccccccc-hhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhc
Q 011789 354 ----VLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTD-QFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 354 ----lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~D-Q~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~ 428 (477)
.|..-.+..+++ .|..|.++.|+.|||||.+|.-.- ...-+..+... |+|..+. -+.++-.+.--++-+
T Consensus 830 vrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hlia----k~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIA----KNREEYVQIAVRLAT 903 (966)
T ss_pred HHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHh----hhHHHHHHHHHHhhc
Confidence 232222222444 467899999999999999997432 23334456777 9998773 344444443334444
Q ss_pred CC
Q 011789 429 EK 430 (477)
Q Consensus 429 ~~ 430 (477)
|.
T Consensus 904 d~ 905 (966)
T KOG4626|consen 904 DK 905 (966)
T ss_pred CH
Confidence 54
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.32 E-value=0.041 Score=46.75 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHh
Q 011789 24 PSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVF 103 (477)
Q Consensus 24 p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (477)
-+..|+++|.++||+|++++.......-..... ++.+..++-..... ......++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~---~~~~~~~~------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEED---------------GVRVHRLPLPRRPW---PLRLLRFL------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEET---------------TEEEEEE--S-SSS---GGGHCCHH-------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccC---------------CceEEeccCCccch---hhhhHHHH-------
Confidence 467899999999999999996665543211111 67777776321110 00011111
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCCCc-chHHHHH-HhCCceEEE
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTYFV-WPSKLAK-KFGLYYISF 147 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~~~-~~~~~A~-~~gIP~v~~ 147 (477)
..+..++ .... .+||+|.+..... ....+++ ..++|++..
T Consensus 61 -~~~~~~l-~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 61 -RRLRRLL-AARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp -HHHHHHC-HHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred -HHHHHHH-hhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 1123333 1122 3999999887432 3334445 889999887
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.85 E-value=2.2 Score=41.85 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=70.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCe-EEEecCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDI-RYMTLSDGLPLGF 86 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 86 (477)
||+++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+.+...+ .+ +++.++....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----------------~vd~vi~~~~~~~--- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENP----------------DINALYGLDRKKA--- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCC----------------CccEEEEeChhhh---
Confidence 68999999999999999999999997 79999999999888774422 22 2333332100
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
..... .+ ..+..++..++.. ++|++|.-........++...|.|.-+-
T Consensus 62 --~~~~~----~~-----~~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 62 --KAGER----KL-----ANQFHLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred --cchHH----HH-----HHHHHHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 00000 11 0112344555553 9999996654556677888889886553
No 138
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.59 E-value=1.6 Score=42.64 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=71.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG 85 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (477)
||||+++-....|++.=..++.+.|+++ +.++++++...+.+.++..+. ++-+..-+. .+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~----------------I~~vi~~~~--~~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPE----------------IDKVIIIDK--KK 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChH----------------hhhhccccc--cc
Confidence 7999999999999999999999999998 499999999999988843221 111111010 00
Q ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 86 FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
.+ ........+...++.. ++|++|.=....-...++...++|.-.-
T Consensus 63 ---~~-----------~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 63 ---KG-----------LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ---cc-----------cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 1112233445555553 8999998776666666677788876554
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.02 E-value=0.76 Score=39.98 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=54.7
Q ss_pred hCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHH
Q 011789 34 SQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQ 113 (477)
Q Consensus 34 ~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 113 (477)
++||+|++++........ . +++...+...-... ....-...-++........ +...+.+
T Consensus 1 q~gh~v~fl~~~~~~~~~-~------------------GV~~~~y~~~~~~~-~~~~~~~~~~e~~~~rg~a-v~~a~~~ 59 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-P------------------GVRVVRYRPPRGPT-PGTHPYVRDFEAAVLRGQA-VARAARQ 59 (171)
T ss_pred CCCCEEEEEecCCCCCCC-C------------------CcEEEEeCCCCCCC-CCCCcccccHHHHHHHHHH-HHHHHHH
Confidence 479999999955544332 2 56666665421111 1111111122222122222 3344455
Q ss_pred hHhcCCCccEEEecCCCcchHHHHHHh-CCceEEE
Q 011789 114 IVRSGENVHCLIADTYFVWPSKLAKKF-GLYYISF 147 (477)
Q Consensus 114 ~~~~~~~pD~iI~D~~~~~~~~~A~~~-gIP~v~~ 147 (477)
+++++..||+||...-.-.++.+-+.+ ++|.+.+
T Consensus 60 L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 60 LRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEE
Confidence 666667899999997666888899999 8999987
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.91 E-value=3.3 Score=40.00 Aligned_cols=57 Identities=18% Similarity=0.051 Sum_probs=40.9
Q ss_pred cHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHH---HHHHhhhcceeee
Q 011789 350 CQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNR---KLAVDDWNVGLNL 408 (477)
Q Consensus 350 p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na---~~v~~~~G~G~~~ 408 (477)
|...+|+.++. ++||=--.+=+.||+..|+|+.++|.-.-..... ..+++. |+-...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~ 280 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPF 280 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEEC
Confidence 77789999997 6777777789999999999999999865222222 334444 555544
No 141
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.58 E-value=0.37 Score=43.08 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||+.-=-+. +---+..|+++|.+.||+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 67777665544 4445778999998889999999999887666
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.57 E-value=2.1 Score=36.60 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=24.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 18 LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 18 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
..|=-.-+..|+++|+++||+|++++.......
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 556667789999999999999999977655543
No 143
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=91.53 E-value=2.3 Score=43.72 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=61.2
Q ss_pred EeeccHHH---hhccCCCCcccc---ccCCc-hhhHHHhcCcc----eeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 346 ITWCCQTS---VLAHPAIGGFLT---HCGWN-SVLEGLWCGVP----LLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 346 ~~~~p~~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|+--..+ .+.. . .-|..+ ...
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv---~p~ 412 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLV---NPY 412 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEE---CCC
Confidence 35777765 6888888 553 45665 67899999999 54432221 1111 3 346666 456
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDL 467 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 467 (477)
+.++++++|.++++++.. +.+++.++..+.+. .-+...-+++++.+|
T Consensus 413 d~~~la~ai~~~l~~~~~-e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 DIDEVADAIHRALTMPLE-ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 889999999999987611 22222233333332 245555666666554
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=91.45 E-value=5.8 Score=43.91 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=54.3
Q ss_pred CCCeEEEeeccHH---HhhccCCCCccccc---cCC-chhhHHHhcCcceecccccc--chhhH--HHHH-Hhhhcceee
Q 011789 340 ADRSMIITWCCQT---SVLAHPAIGGFLTH---CGW-NSVLEGLWCGVPLLCFPLYT--DQFTN--RKLA-VDDWNVGLN 407 (477)
Q Consensus 340 ~~nv~v~~~~p~~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v-~~~~G~G~~ 407 (477)
.++|.+..+.+.. .+++.+++ ||.- =|+ .+.+||+++|+|.|+....+ |.-.+ ...+ +.. +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3578888877764 48898998 7742 233 48899999999998865532 21111 1111 223 56777
Q ss_pred ecCCCCcCHHHHHHHHHHHhc
Q 011789 408 LSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 408 ~~~~~~~~~~~l~~~i~~~l~ 428 (477)
. +..+++.|.++|.++++
T Consensus 913 f---~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 F---LTPDEQGLNSALERAFN 930 (977)
T ss_pred e---cCCCHHHHHHHHHHHHH
Confidence 7 45588889999888764
No 145
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.43 E-value=13 Score=35.23 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=57.6
Q ss_pred CCeEEEeeccH---HHhhccCCCCccccc---cCCch-hhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCC
Q 011789 341 DRSMIITWCCQ---TSVLAHPAIGGFLTH---CGWNS-VLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKV 413 (477)
Q Consensus 341 ~nv~v~~~~p~---~~lL~~~~~~~~ItH---gG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 413 (477)
+++...++++. ..++..+++ ++.- .|.|. +.||+++|+|+|. .+.......+... +.|... ..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~----~~~~~~~e~~~~~-~~g~~~---~~ 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIA----SDVGGIPEVVEDG-ETGLLV---PP 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEE----CCCCChHHHhcCC-CceEec---CC
Confidence 57777888883 236776776 5544 35544 5999999999966 4444444444444 457733 23
Q ss_pred cCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011789 414 ITKEEVSKNVHLLMGEKSGAKYRNAAKQ 441 (477)
Q Consensus 414 ~~~~~l~~~i~~~l~~~~~~~~~~~a~~ 441 (477)
.+.+.+..++..++++. +.++...+
T Consensus 327 ~~~~~~~~~i~~~~~~~---~~~~~~~~ 351 (381)
T COG0438 327 GDVEELADALEQLLEDP---ELREELGE 351 (381)
T ss_pred CCHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 36899999999998876 44444443
No 146
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.38 E-value=2.7 Score=40.70 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=36.9
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|+||+|++. ||-|=.--..++|-.|++.|++|.++++++....-
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 578877777 78899888999999999999999889888766554
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.30 E-value=1.7 Score=44.53 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=67.4
Q ss_pred eeccHHH---hhccCCCCcccc---ccCCc-hhhHHHhcCcc----eeccccccchhhHHHHHHhhhcceeeecCCCCcC
Q 011789 347 TWCCQTS---VLAHPAIGGFLT---HCGWN-SVLEGLWCGVP----LLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVIT 415 (477)
Q Consensus 347 ~~~p~~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 415 (477)
..+++.+ ++..+++ +|. +=|+| ++.||+++|+| +|+--..+ .+.. . +-|+.+ ...+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~---l-~~gllV---nP~d 408 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQE---L-NGALLV---NPYD 408 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHH---h-CCcEEE---CCCC
Confidence 4566665 6788887 664 44765 78899999999 66544432 2222 2 346666 4568
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 416 KEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 416 ~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
.+.++++|.++|+++.. +-+++.+++.+.+.. -+...-.++|+++|.
T Consensus 409 ~~~lA~aI~~aL~~~~~-er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 409 IDGMADAIARALTMPLE-EREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 99999999999986511 455555555555542 466666777777663
No 148
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.02 E-value=1.6 Score=42.17 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=34.3
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||++|+.. |+-|=.--..++|-.++++|++|.++++++....-
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~ 44 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLS 44 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHH
Confidence 45555554 78899999999999999999999999999876543
No 149
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=90.63 E-value=3.1 Score=41.00 Aligned_cols=110 Identities=7% Similarity=0.027 Sum_probs=72.9
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCe-EEEecCCC
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDI-RYMTLSDG 81 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 81 (477)
...+|||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.+...+ .+ +++.++..
T Consensus 2 ~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----------------~id~vi~~~~~ 65 (352)
T PRK10422 2 DKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP----------------EINALYGIKNK 65 (352)
T ss_pred CCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC----------------CceEEEEeccc
Confidence 4567999999999999999999999999998 89999999999888774422 22 22333311
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 82 LPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
. ......+. .+..++..++.+ ++|++|.-........++...|.|..+-
T Consensus 66 ------~-~~~~~~~~--------~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 66 ------K-AGASEKIK--------NFFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred ------c-ccHHHHHH--------HHHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 0 00010111 123445566554 9999996554444456677778776553
No 150
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=18 Score=34.96 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch--hhh-ccCCCCCCccccccccCCCCCeEEEec
Q 011789 2 AGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH--QQM-TKASPEMGSDIFAGVRKSGLDIRYMTL 78 (477)
Q Consensus 2 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l 78 (477)
.....++.|++++..|--||--.|-.=|..|++.|.+|.+++..... +.+ . .++++++.+
T Consensus 6 ~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-----------------hprI~ih~m 68 (444)
T KOG2941|consen 6 YENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-----------------HPRIRIHGM 68 (444)
T ss_pred cccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc-----------------CCceEEEeC
Confidence 45667889999999999999999999999999999999998754432 222 2 127889888
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCC-CcchHHHHH----HhCCceEEEecchhH
Q 011789 79 SDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTY-FVWPSKLAK----KFGLYYISFWTESAL 153 (477)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~-~~~~~~~A~----~~gIP~v~~~~~~~~ 153 (477)
+.- +.......-+.-.++.++. ....+-.++. . ..+|.|++-.- +.....++. -.|..+++=|.-..+
T Consensus 69 ~~l-~~~~~~p~~~~l~lKvf~Q-fl~Ll~aL~~---~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 69 PNL-PFLQGGPRVLFLPLKVFWQ-FLSLLWALFV---L--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred CCC-cccCCCchhhhhHHHHHHH-HHHHHHHHHh---c--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 842 1110011111111222211 1111222222 1 38899887653 334444443 446677776654443
No 151
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=89.44 E-value=4.1 Score=40.04 Aligned_cols=103 Identities=8% Similarity=0.031 Sum_probs=70.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEE-EecCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRY-MTLSDGLPLG 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 85 (477)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.+...+ .++- +.++.. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----------------~vd~vi~~~~~--~- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP----------------EVNEAIPMPLG--H- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC----------------ccCEEEecccc--c-
Confidence 689999999999999999999999996 89999999998888774422 2222 222211 0
Q ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEE
Q 011789 86 FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYIS 146 (477)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~ 146 (477)
.... + .....++..++.+ ++|++|.=....-...++...|+|.-+
T Consensus 62 -----~~~~-~--------~~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 -----GALE-I--------GERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -----chhh-h--------HHHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 1 1123445556554 999999765555566677788888655
No 152
>PRK14099 glycogen synthase; Provisional
Probab=88.48 E-value=17 Score=37.59 Aligned_cols=118 Identities=10% Similarity=0.122 Sum_probs=62.2
Q ss_pred cCCCe-EEEeeccHHH-hh-ccCCCCcccc---ccCCc-hhhHHHhcCcceeccccc--cchhhHHH---HHHhhhccee
Q 011789 339 VADRS-MIITWCCQTS-VL-AHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLY--TDQFTNRK---LAVDDWNVGL 406 (477)
Q Consensus 339 ~~~nv-~v~~~~p~~~-lL-~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~--~DQ~~na~---~v~~~~G~G~ 406 (477)
.++++ .+.+|-.... ++ +.+++ ||. +=|.| +.+||+++|+|.|+.... .|.-.... ..+.. +.|.
T Consensus 348 ~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~ 424 (485)
T PRK14099 348 YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGV 424 (485)
T ss_pred CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceE
Confidence 34555 4456633332 33 45676 664 45554 668999999776665432 12111110 01112 3577
Q ss_pred eecCCCCcCHHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 011789 407 NLSNEKVITKEEVSKNVHL---LMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 407 ~~~~~~~~~~~~l~~~i~~---~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 471 (477)
.+ +.-+.++|.++|.+ +++|+ +.+++..+-+ .. ..-+-++..++.++..++.+
T Consensus 425 l~---~~~d~~~La~ai~~a~~l~~d~---~~~~~l~~~~---~~---~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 425 QF---SPVTADALAAALRKTAALFADP---VAWRRLQRNG---MT---TDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred Ee---CCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHh---hh---hcCChHHHHHHHHHHHHHHH
Confidence 77 45588999999987 56666 4333322211 11 13344455566666555544
No 153
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.30 E-value=0.83 Score=37.09 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=29.3
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQG---HVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|||+|+.-|-.+ .-.-.++|+.+-++|||+|.+++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 789999887555 4567899999999999999999877654
No 154
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.07 E-value=10 Score=35.36 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCC-CCC
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDG-LPL 84 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 84 (477)
..+||||+.-=-+. |.--+..|+++|.+.| +|+++.+...+.-..... ++...+++..+... -..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai------------t~~~pl~~~~~~~~~~~~ 68 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM------------TLGVPLRIKEYQKNNRFF 68 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc------------cCCCCeEEEEEccCCCce
Confidence 34578876543322 2234778899998888 798888877765553211 22224555554411 000
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCC----------Cc---chHHHHHHhCCceEEEec
Q 011789 85 GFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTY----------FV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~----------~~---~~~~~A~~~gIP~v~~~~ 149 (477)
...-.+.+.+-...- +..++ .+ +||+||+..- +. ++..-|..+|||.|.++.
T Consensus 69 ~y~v~GTPaDCV~la-------l~~~~----~~--~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 69 GYTVSGTPVDCIKVA-------LSHIL----PE--KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EEEEcCcHHHHHHHH-------HHhhc----CC--CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 111122222221111 22222 22 8999997542 22 344556788999999854
No 155
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.77 E-value=8.8 Score=30.97 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||++.+.++..|.....-++..|.++|++|.++....-.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 589999999999999999999999999999998755444333
No 156
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=87.55 E-value=5.2 Score=34.85 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred EEcCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCcchhhh--ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCC
Q 011789 13 FISYPLQGHVNPSVQLALKL-ASQ-GFTITFVNTHFIHQQM--TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDR 88 (477)
Q Consensus 13 ~~~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (477)
++-.++.||..=|+.|.+.+ .++ .++..+++........ ..-.+ .......+..+|......
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~-----------~~~~~~~~~~~~r~r~v~--- 67 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK-----------SSSKRHKILEIPRAREVG--- 67 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH-----------hccccceeeccceEEEec---
Confidence 34567889999999999999 334 4566566555443222 10000 000011333333211100
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHh------CCceEEE
Q 011789 89 SLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKF------GLYYISF 147 (477)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~------gIP~v~~ 147 (477)
.. .+..........+..+.- +..+ +||+||+..-.. ....+|+.+ |.+.|.+
T Consensus 68 -q~---~~~~~~~~l~~~~~~~~i-l~r~--rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 68 -QS---YLTSIFTTLRAFLQSLRI-LRRE--RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred -hh---hHhhHHHHHHHHHHHHHH-HHHh--CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 01 111111222222222222 2222 999999987655 567788888 9999887
No 157
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=86.39 E-value=1.3 Score=46.21 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCeEEEeecc--HH-HhhccCCCCcccccc---CCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCc
Q 011789 341 DRSMIITWCC--QT-SVLAHPAIGGFLTHC---GWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 341 ~nv~v~~~~p--~~-~lL~~~~~~~~ItHg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 414 (477)
..|.+.++.. +. ..+.+..+ +|.=+ |.++..||+.+|+|+| .......|+.. .=|..+ -
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li-----~ 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII-----D 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe-----C
Confidence 4677777777 44 47877776 77655 6779999999999999 33344455555 556666 3
Q ss_pred CHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSG-AKYRNAAKQVKKAMEY 448 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~~ 448 (477)
+..+|.++|..+|++.+. +.+...+.+.++++..
T Consensus 474 d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~ 508 (519)
T TIGR03713 474 DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSS 508 (519)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 778999999999998733 5566666666666553
No 158
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=86.38 E-value=3.2 Score=37.38 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=34.7
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYP--LQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|.+|+++++| +-|-.--...|+.+|+.+|+.|.++-..-.
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 6788888886 789999999999999999999999865543
No 159
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.94 E-value=15 Score=37.45 Aligned_cols=178 Identities=10% Similarity=0.100 Sum_probs=100.8
Q ss_pred cCCcEEEEcchhhccHHHHHHHHccCC--EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCC
Q 011789 219 RNADYVLCNTVHELESEAVTALKAKIP--FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVS 296 (477)
Q Consensus 219 ~~~~~~l~~s~~~l~~~~~~~~~~~~p--~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~ 296 (477)
.+.+.+++.+...-+.- .....+..+ ++++|.+...+. ..+..+.++++| +
T Consensus 238 ~~~~~iIv~T~~q~~di-~~r~~~~~~~~~ip~g~i~~~~~-------------------~~r~~~~~l~~t-------~ 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKI-KELLDNEYQEQISQLGYLYPFKK-------------------DNKYRKQALILT-------N 290 (438)
T ss_pred cccCeEEeCCHHHHHHH-HHHhCcccCceEEEEEEEEeecc-------------------ccCCcccEEEEC-------C
Confidence 45667777664322211 111122344 788888843111 122244577776 2
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEcCCCCCCCCCCCCchhHH--HhcCCCeEEEe-ecc-HH-HhhccCCCCccccccC--
Q 011789 297 KRDLIEIANGIAK-SKVTFIWILRPDIVSSDDPNPLPEDFK--KEVADRSMIIT-WCC-QT-SVLAHPAIGGFLTHCG-- 368 (477)
Q Consensus 297 ~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~--~~~~~nv~v~~-~~p-~~-~lL~~~~~~~~ItHgG-- 368 (477)
...++.+....+. ++..+=+..+.+ ..+.+. ++. +|+.+.+ +.+ +. +++..|++-+-|+||.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te---------~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTE---------MSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCc---------ccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccH
Confidence 4445555555555 444443322211 112221 344 6777765 677 44 5999999988999987
Q ss_pred CchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011789 369 WNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAM 446 (477)
Q Consensus 369 ~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~ 446 (477)
..++.||+.+|+|++..=.... +...+.. |-.. ..-+.+++.++|.++|+|+ +-.+.+...+++.
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~---~~~~~~~m~~~i~~lL~d~---~~~~~~~~~q~~~ 425 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIF---EHNEVDQLISKLKDLLNDP---NQFRELLEQQREH 425 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccC---CcccccC----Ccee---cCCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHH
Confidence 4799999999999998543321 1111211 3344 3457899999999999988 5444443333333
No 160
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=84.89 E-value=1.4 Score=36.47 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=36.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|||++...|+.+=.. ...+.++|.++|++|.++.++...+.+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 689998888877777 999999999999999999999998888
No 161
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=84.11 E-value=5.7 Score=35.40 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCC-CCCCcHHHHHHHH
Q 011789 22 VNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF-DRSLNHEQFMSSL 99 (477)
Q Consensus 22 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 99 (477)
+.-.+.+...+..+|-+|.|+++......+ ..-+. ......+...+-.+. ............+
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~---------------~~~~~~i~~rw~~G~LTN~~~~~~~~~~~ 106 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAE---------------RTGSFYVNGRWLGGTLTNWKTIRKSIKRL 106 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---------------HcCCeeecCeecCCcCCCHHHHHHHHHHH
Confidence 344555667777889999999988755444 32111 111111222222221 1111111122222
Q ss_pred HHHhHHHHHHHHHHhHhcCCCccEEEecC-CCc-chHHHHHHhCCceEEEecch
Q 011789 100 LHVFSAHAEEVIGQIVRSGENVHCLIADT-YFV-WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 100 ~~~~~~~~~~ll~~~~~~~~~pD~iI~D~-~~~-~~~~~A~~~gIP~v~~~~~~ 151 (477)
.......+...+..+......||+||+-. ..- .+..=|.++|||.|.+.-+.
T Consensus 107 ~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 107 KKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 11111222222322322234899988544 333 67888999999999996554
No 162
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=83.91 E-value=8.5 Score=37.33 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=41.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhcc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTK 53 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~ 53 (477)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.+..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 699999999999999999999999997 899999999988877643
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.14 E-value=23 Score=32.97 Aligned_cols=41 Identities=10% Similarity=-0.049 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||+.-=-+. |.--+..|+++|.+ +|+|+++.+...+.-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 46655533222 22227788899975 6899999888777655
No 164
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.03 E-value=7.4 Score=36.42 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
|||+++. ++|. -..|++.|.++||+|+..+......
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~ 36 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGK 36 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCcc
Confidence 5666654 3443 5689999999999999877666543
No 165
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.97 E-value=10 Score=32.55 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
...+|||++.-.|+.|-.--.+.++..|.+.|+.|-=+.++...
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 34679999999999999999999999999999988766555444
No 166
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=81.68 E-value=23 Score=32.95 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||+.-=-+. |.--..+|+++|.+ +|+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 46555543332 22336778888865 6899998888877665
No 167
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.40 E-value=3.8 Score=34.26 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
++.+|++.+.++.+|-.-..-++..|.++|++|+++....-.+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 467999999999999999999999999999999999877665555
No 168
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=80.77 E-value=27 Score=32.52 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=59.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDR 88 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (477)
||||+.-=-+. |.--+..|+++|.+. |+|+++.+...+.-..... ++...+++..+.++. ..-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai------------t~~~pl~~~~~~~~~---~~v 63 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL------------TLTRPLRVEKVDNGF---YAV 63 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc------------cCCCCeEEEEecCCe---EEE
Confidence 45555433222 233377889999998 7999988888776653311 122245555543211 111
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCC----------Cc---chHHHHHHhCCceEEEec
Q 011789 89 SLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTY----------FV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~----------~~---~~~~~A~~~gIP~v~~~~ 149 (477)
.+.+.+-...- +..++ .. +||+||+..- +. ++..-|..+|||.+.++.
T Consensus 64 ~GTPaDcV~~g-------l~~l~----~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 64 DGTPTDCVHLA-------LNGLL----DP--KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCcHHHHHHHH-------HHhhc----cC--CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 22222222111 22222 22 8999997542 22 344556788999999854
No 169
>PRK12342 hypothetical protein; Provisional
Probab=80.60 E-value=24 Score=32.98 Aligned_cols=30 Identities=13% Similarity=-0.073 Sum_probs=24.6
Q ss_pred CccEEEecCCCc-c-----hHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFV-W-----PSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~-~-----~~~~A~~~gIP~v~~~~ 149 (477)
+||+|++...+. . +..+|+.+|+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 799999876544 3 78899999999998743
No 170
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=80.13 E-value=31 Score=32.38 Aligned_cols=41 Identities=10% Similarity=-0.047 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||+.-=-+. |.--+..|++.|...| +|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 45555433222 3344778899998887 79888877766555
No 171
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=79.76 E-value=1.5 Score=38.17 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEE
Q 011789 21 HVNPSVQLALKLAS-QGFTITFV 42 (477)
Q Consensus 21 H~~p~l~La~~L~~-rGh~Vt~~ 42 (477)
|....-+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 77888999999988 55544443
No 172
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=79.57 E-value=5.5 Score=41.56 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=46.7
Q ss_pred cHHHhhccCCCCcccc---ccCCc-hhhHHHhcCcceeccccc-cchhhHHHHHHhhhc--ceeeecCCC----CcCHHH
Q 011789 350 CQTSVLAHPAIGGFLT---HCGWN-SVLEGLWCGVPLLCFPLY-TDQFTNRKLAVDDWN--VGLNLSNEK----VITKEE 418 (477)
Q Consensus 350 p~~~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~-~DQ~~na~~v~~~~G--~G~~~~~~~----~~~~~~ 418 (477)
+..+++.-|++ +|. +=|+| +..||+++|+|+|+.... ..... ..+... | .|+.+...+ ..+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 35567788888 554 45654 899999999999997753 22222 222222 2 466663101 335677
Q ss_pred HHHHHHHHhcCC
Q 011789 419 VSKNVHLLMGEK 430 (477)
Q Consensus 419 l~~~i~~~l~~~ 430 (477)
|.+++.++++.+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888888887544
No 173
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=79.28 E-value=11 Score=41.67 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=65.7
Q ss_pred eccHHH---hhccCCCCcccc---ccCCc-hhhHHHhcCcc---eeccccccchhhHHHHHHhhhc-ceeeecCCCCcCH
Q 011789 348 WCCQTS---VLAHPAIGGFLT---HCGWN-SVLEGLWCGVP---LLCFPLYTDQFTNRKLAVDDWN-VGLNLSNEKVITK 416 (477)
Q Consensus 348 ~~p~~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~ 416 (477)
++|+.+ ++..+++ ||. .-|+| +..|++++|+| ++++. +--..+.. + | -|+.+ ...+.
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~---l-~~~allV---nP~D~ 430 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS---L-GAGALLV---NPWNI 430 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh---h-cCCeEEE---CCCCH
Confidence 455544 7888887 663 45886 67799999999 44433 22222222 3 4 46777 45689
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 011789 417 EEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 417 ~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 471 (477)
+.++++|.++|+.+.. +-+++.+++.+.+.. -+...-.++|++.+.+..
T Consensus 431 ~~lA~AI~~aL~m~~~-er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 431 TEVSSAIKEALNMSDE-ERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHHHHHHhCCHH-HHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 9999999999984311 344445555555543 355566777777766543
No 174
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.01 E-value=4.9 Score=37.92 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=57.6
Q ss_pred EeeccHHHhhccCCCCccccccCCchhhH-HHhcCcceeccccccchh--hHHHHHHhhhcceeeecCCCCcCHHHHHHH
Q 011789 346 ITWCCQTSVLAHPAIGGFLTHCGWNSVLE-GLWCGVPLLCFPLYTDQF--TNRKLAVDDWNVGLNLSNEKVITKEEVSKN 422 (477)
Q Consensus 346 ~~~~p~~~lL~~~~~~~~ItHgG~gs~~e-al~~GvP~v~~P~~~DQ~--~na~~v~~~~G~G~~~~~~~~~~~~~l~~~ 422 (477)
+.|-...++|.++++ .|--. ||..| ++--|+|+|.+|-.+-|+ ..|.+=.++.|+.+.+ -+..+..-..+
T Consensus 300 lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl---v~~~aq~a~~~ 372 (412)
T COG4370 300 LSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL---VRPEAQAAAQA 372 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee---cCCchhhHHHH
Confidence 456667778888886 55443 44444 577899999999998885 4566666664666666 23344444445
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 011789 423 VHLLMGEKSGAKYRNAAKQ 441 (477)
Q Consensus 423 i~~~l~~~~~~~~~~~a~~ 441 (477)
.+++|.|+ .+..+++.
T Consensus 373 ~q~ll~dp---~r~~air~ 388 (412)
T COG4370 373 VQELLGDP---QRLTAIRH 388 (412)
T ss_pred HHHHhcCh---HHHHHHHh
Confidence 55699999 77776663
No 175
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=78.91 E-value=14 Score=34.19 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCC--CCCCCCCCCCcHHHHHHHHHH
Q 011789 24 PSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSD--GLPLGFDRSLNHEQFMSSLLH 101 (477)
Q Consensus 24 p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 101 (477)
-..+|+++|.+.| +|+++.+...+.-..... ++...+++..++. +. ......+.+.+ |-.+
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai------------t~~~pl~~~~~~~~~~~-~~~~v~GTPaD-cv~~-- 77 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSGTGHSL------------TLFEPLRVGQVKVKNGA-HIYAVDGTPTD-CVIL-- 77 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccccccCc------------CCCCCeEEEEeccCCCc-cEEEEcCcHHH-HHHH--
Confidence 3678899999988 899988888776663211 1222556655542 11 01111222222 2222
Q ss_pred HhHHHHHHHHHHhHhcCCCccEEEecCC----------Cc---chHHHHHHhCCceEEEec
Q 011789 102 VFSAHAEEVIGQIVRSGENVHCLIADTY----------FV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 102 ~~~~~~~~ll~~~~~~~~~pD~iI~D~~----------~~---~~~~~A~~~gIP~v~~~~ 149 (477)
.+..++ .+ +||+||+..- +. ++..-|..+|||.+.++.
T Consensus 78 ----gl~~l~----~~--~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 78 ----GINELM----PE--VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred ----HHHHhc----cC--CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 122222 22 8999997643 12 344556788999999854
No 176
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=78.36 E-value=14 Score=33.94 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=24.5
Q ss_pred CccEEE-ecCCCc-chHHHHHHhCCceEEEecch
Q 011789 120 NVHCLI-ADTYFV-WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 120 ~pD~iI-~D~~~~-~~~~~A~~~gIP~v~~~~~~ 151 (477)
-||+++ +|+..- -+..=|.++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 599876 555433 78888999999999996554
No 177
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.15 E-value=25 Score=33.19 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=67.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQG--FTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
||+++-..+.|++.-+.++.++|+++. -+|++++.+...+.+...+. -=++..++...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~---------------id~v~~~~~~~----- 60 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPE---------------VDRVIVLPKKH----- 60 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCc---------------cCEEEEcCCcc-----
Confidence 689999999999999999999999984 89999999988887743221 11223333210
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEE
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYIS 146 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~ 146 (477)
..... ..+..++..+... ++|+++.=........++...+++...
T Consensus 61 ~~~~~------------~~~~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 61 GKLGL------------GARRRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred cccch------------HHHHHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 00111 1122444555553 899999776665555567777777654
No 178
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=77.98 E-value=3.4 Score=36.44 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|+||++.-.|+.|=+. ...+.+.|.++|++|.++.++...+.+
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 6789988888777665 899999999999999999999887776
No 179
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=77.44 E-value=21 Score=34.09 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=58.3
Q ss_pred CCeEEE-eeccHHH---hhccCCCCccccc--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-C
Q 011789 341 DRSMII-TWCCQTS---VLAHPAIGGFLTH--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-V 413 (477)
Q Consensus 341 ~nv~v~-~~~p~~~---lL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~ 413 (477)
+++.+. +++|.++ +|++|+++.|+|+ =|.|++.-.++.|+|+++- .+-+.|.. +.+. |+=+..+ . .
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqd-l~e~-gv~Vlf~--~d~ 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQD-LTEQ-GLPVLFT--GDD 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHH-HHhC-CCeEEec--CCc
Confidence 688876 4777654 9999999888876 4899999999999999874 34444444 5555 7877553 3 8
Q ss_pred cCHHHHHHHHHHH
Q 011789 414 ITKEEVSKNVHLL 426 (477)
Q Consensus 414 ~~~~~l~~~i~~~ 426 (477)
++...+.++=+++
T Consensus 279 L~~~~v~e~~rql 291 (322)
T PRK02797 279 LDEDIVREAQRQL 291 (322)
T ss_pred ccHHHHHHHHHHH
Confidence 8888887765544
No 180
>PRK06849 hypothetical protein; Provisional
Probab=77.30 E-value=14 Score=36.85 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
.+|+|++..... .-.+.++++|.++||+|.++......
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 568888885332 35899999999999999999776543
No 181
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=76.85 E-value=19 Score=35.03 Aligned_cols=102 Identities=9% Similarity=0.044 Sum_probs=67.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCe-EEEecCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDI-RYMTLSDGLPLGF 86 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 86 (477)
||+++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.+...+. + +++.++.. .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~----------------id~v~~~~~~--~-- 60 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPE----------------IRQAIDMPLG--H-- 60 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCch----------------hceeeecCCc--c--
Confidence 68999999999999999999999997 899999999888777744221 2 12222211 0
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEE
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYIS 146 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~ 146 (477)
....+ .....++..++.. ++|++|.-........++...|+|.-+
T Consensus 61 ----~~~~~---------~~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 61 ----GALEL---------TERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ----cchhh---------hHHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00001 0122344555553 999999876555556667777887643
No 182
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.82 E-value=4.9 Score=35.81 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+.+||++--.|+.|=+.-...|+++|.++||+|.++.++...+.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 456888877776665554799999999999999999998877654
No 183
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=76.55 E-value=35 Score=33.24 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCeEEE-eeccHHH---hhccCCCCccccc--cCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCC-C
Q 011789 341 DRSMII-TWCCQTS---VLAHPAIGGFLTH--CGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK-V 413 (477)
Q Consensus 341 ~nv~v~-~~~p~~~---lL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~ 413 (477)
+|+.+. +++|..+ +|..|+++.|.|. =|+|++.-.|+.|+|+++ ..+-.--.-+.+. |+=+.-. + .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L----~~~np~~~~l~~~-~ipVlf~--~d~ 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL----SRDNPFWQDLKEQ-GIPVLFY--GDE 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE----ecCChHHHHHHhC-CCeEEec--ccc
Confidence 577765 5888665 9999999777765 589999999999999987 3333344556666 7777663 3 8
Q ss_pred cCHHHHHHHHHHHhc
Q 011789 414 ITKEEVSKNVHLLMG 428 (477)
Q Consensus 414 ~~~~~l~~~i~~~l~ 428 (477)
++...++++=+++.+
T Consensus 318 L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 LDEALVREAQRQLAN 332 (360)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999988887754
No 184
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.21 E-value=7.8 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
..-++++.++...|...+-.+|+.|+++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 47889999999999999999999999999998754
No 185
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=75.84 E-value=4.3 Score=35.86 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
|+||++.-.|+-| .+-...|+++|.+ .||+|.++.++...+.+
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 6789888888877 7779999999999 59999999999998887
No 186
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=75.70 E-value=15 Score=35.60 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=25.5
Q ss_pred CCccEEEe-cCCCc-chHHHHHHhCCceEEEecchh
Q 011789 119 ENVHCLIA-DTYFV-WPSKLAKKFGLYYISFWTESA 152 (477)
Q Consensus 119 ~~pD~iI~-D~~~~-~~~~~A~~~gIP~v~~~~~~~ 152 (477)
..||+||+ |+..- .+..=|.++|||.|.+.-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 37998774 54433 788889999999999965543
No 187
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=75.16 E-value=5.7 Score=36.97 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=25.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|||+++..-+.|+ .|++.|.++|+ |.+-+.-.....+
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~ 37 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGEL 37 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhh
Confidence 6888876666654 78999999999 6654444444333
No 188
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=74.65 E-value=18 Score=33.53 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHh
Q 011789 24 PSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVF 103 (477)
Q Consensus 24 p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (477)
=+..|++.|. .+++|+++.+...+.-++... ++...++...+..+. ....+.+.+ |-.+
T Consensus 15 Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl------------Tl~~Plr~~~~~~~~---~av~GTPaD-CV~l---- 73 (252)
T COG0496 15 GIRALARALR-EGADVTVVAPDREQSGASHSL------------TLHEPLRVRQVDNGA---YAVNGTPAD-CVIL---- 73 (252)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCccccccc------------ccccCceeeEeccce---EEecCChHH-HHHH----
Confidence 3667788888 999999999998887663321 122244444444310 011122111 2222
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCC----------Cc---chHHHHHHhCCceEEEecc
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTY----------FV---WPSKLAKKFGLYYISFWTE 150 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~----------~~---~~~~~A~~~gIP~v~~~~~ 150 (477)
.+..++++ .+||+||+... +. ++..=|..+|||.|.++..
T Consensus 74 --al~~l~~~-----~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 74 --GLNELLKE-----PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred --HHHHhccC-----CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 13333333 26999997543 22 3444567899999998543
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.16 E-value=52 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVN 43 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 43 (477)
.-.|.+++..+.|=....+.+|-+.+.+|++|.++=
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 347889999999999999999999999999999873
No 190
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=74.14 E-value=46 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=30.6
Q ss_pred CcEEEEEcC---CC-ccCHHHHH-HHHHHHHhCCCeEEEEeCCcchh
Q 011789 8 KPHAIFISY---PL-QGHVNPSV-QLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 8 ~~~il~~~~---~~-~GH~~p~l-~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
|.||+++.. |+ .|=+--++ .|+..|+++||+||+++......
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~ 47 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYP 47 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCC
Confidence 678888764 32 46565544 57888889999999998876553
No 191
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=74.03 E-value=22 Score=33.77 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=36.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
-.|.+.-.|+-|-=--.=+|++.|.++||+|-++...+.....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 4778888899999888999999999999999998876665544
No 192
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.79 E-value=12 Score=33.12 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=48.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeC-Ccchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCC
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNT-HFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF 86 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (477)
++-+=..+.|-++-..+|+++|.++ |+.|.+-++ +...+.+ ....+ .+.+..+|-+++
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~---------------~v~~~~~P~D~~--- 84 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD---------------RVDVQYLPLDFP--- 84 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG---------------G-SEEE---SSH---
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC---------------CeEEEEeCccCH---
Confidence 3333355789999999999999997 898888665 4444444 22111 333444553211
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEE
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISF 147 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~ 147 (477)
. .++.+++.+ +||++|.-.... .-...|++.|||.+.+
T Consensus 85 -------~-----------~~~rfl~~~-----~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 85 -------W-----------AVRRFLDHW-----RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp -------H-----------HHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEE
T ss_pred -------H-----------HHHHHHHHh-----CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 1 134557777 999988555444 3456788899999998
No 193
>PRK05920 aromatic acid decarboxylase; Validated
Probab=72.74 E-value=6.1 Score=35.50 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.++||++--.|+.+= +-.+.+.+.|.+.||+|+++.+......+
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 467888777776555 68999999999999999999999988777
No 194
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=72.67 E-value=8.4 Score=29.79 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHh
Q 011789 25 SVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVF 103 (477)
Q Consensus 25 ~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (477)
++++|+.|.+.|++ ++.+..-.+.+ .. ++++..+-.....+....+..
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~------------------Gi~~~~v~~~~~~~~~~~g~~----------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH------------------GIEVTEVVNKIGEGESPDGRV----------- 50 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT------------------T--EEECCEEHSTG-GGTHCH-----------
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc------------------CCCceeeeeecccCccCCchh-----------
Confidence 57899999999955 45666666777 66 555444432111110001111
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCCCcc---------hHHHHHHhCCceE
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTYFVW---------PSKLAKKFGLYYI 145 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~~~~---------~~~~A~~~gIP~v 145 (477)
.+.+.+.. .+.|+||....... -..+|..++||++
T Consensus 51 -----~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 -----QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -----HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -----HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 33333434 39999998765442 2457888999985
No 195
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=72.60 E-value=8.1 Score=35.29 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=37.7
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|.-|.|++. ||-|=.--.+.||.+|+++|-.|+++=.++++...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 445666655 78999999999999999999999999988888776
No 196
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=72.48 E-value=20 Score=31.43 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEE-EeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFT--ITF-VNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~-~~~~~~~ 48 (477)
|||+|+..++. ..+..+.++|.+++|+ +.+ ++.+...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~ 40 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKP 40 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTT
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 79999976665 4566778899999997 444 4444433
No 197
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=72.44 E-value=21 Score=28.02 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=21.2
Q ss_pred CccEEEecCCCc---chHHHHHHhCCceEE
Q 011789 120 NVHCLIADTYFV---WPSKLAKKFGLYYIS 146 (477)
Q Consensus 120 ~pD~iI~D~~~~---~~~~~A~~~gIP~v~ 146 (477)
++|++|+.+-.+ +..+..++.|||++.
T Consensus 62 ~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 62 KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 999999988554 667788999999864
No 198
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=72.30 E-value=51 Score=34.06 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=69.0
Q ss_pred eEEEeeccHHH---hhccCCCCcccc--ccCCchhh-HHHhcCc----ceeccccccchhhHHHHHHhhhcceeeecCCC
Q 011789 343 SMIITWCCQTS---VLAHPAIGGFLT--HCGWNSVL-EGLWCGV----PLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEK 412 (477)
Q Consensus 343 v~v~~~~p~~~---lL~~~~~~~~It--HgG~gs~~-eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 412 (477)
+++.+.+|+.+ ++..+++ ++|| .-|+|-++ |.++++. |+|.--+. -|. +.+ .-++.+ .
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~l-~~AllV---N 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VEL-KGALLT---N 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hhc-CCCEEE---C
Confidence 34556788876 6677787 3443 45999655 9999987 55443322 121 444 456777 4
Q ss_pred CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 011789 413 VITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
..+.++++++|.++|+.+.. +=++|.+++.+.+.. -....=.+.|++.|..
T Consensus 432 P~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 432 PYDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 67899999999999998721 234444444444442 3555567777777764
No 199
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=71.33 E-value=45 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
...||++.+.++..|-....=++..|..+|++|+++....-.+.+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 357999999999999999999999999999999998866544444
No 200
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=71.33 E-value=27 Score=31.99 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCcchhhh-ccCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQG-FTITFVNTHFIHQQM-TKASP 56 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~~-~~g~~ 56 (477)
|+|++.--|+.|-..-..-|+.+|.++| ++|..+=...+.... +-|.+
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve 50 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVE 50 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCC
Confidence 7899999999999887777799999886 999999888776666 55554
No 201
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=70.74 E-value=39 Score=31.55 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
++|..-|+.|-..-...+|..+++.|++|.++......
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 44555689999999999999999999999999887753
No 202
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=70.50 E-value=32 Score=31.97 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|++|+++..-+.|+ .|++.|.++|+.|++-+...
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccC
Confidence 67888877666664 68999999999888755444
No 203
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=70.05 E-value=11 Score=38.21 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
.+||||++-.+++-| +|++.|++.++-..+++.|.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 469999999999888 6899999999766777666665
No 204
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.50 E-value=6.1 Score=34.59 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|||.++. +.|++- -.|+++...|||+||-++-....
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 6777764 444443 36789999999999999866554
No 205
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=69.02 E-value=1e+02 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=28.7
Q ss_pred eccHHHhhccCCCCccccccCCchhhHHHhcCcceec
Q 011789 348 WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLC 384 (477)
Q Consensus 348 ~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 384 (477)
+=|+.+.|+.++. .++|--..|-..||...|+|+.+
T Consensus 235 ~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 235 YNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred CCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEE
Confidence 4489999998887 44555567889999999999854
No 206
>PRK11519 tyrosine kinase; Provisional
Probab=68.63 E-value=38 Score=37.04 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh----ccCCCCCCccccccccCCC--------CC
Q 011789 7 QKPHAIFISY--PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM----TKASPEMGSDIFAGVRKSG--------LD 72 (477)
Q Consensus 7 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~--------~~ 72 (477)
++.|+++++. |+.|=..-.+.||..|+..|++|.++-.+.....+ ........+++..+...+. ++
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3446666655 57788888999999999999999998654432222 1111112333333222111 23
Q ss_pred eEEEecCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc----chHHHHHHhCCceEEE
Q 011789 73 IRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV----WPSKLAKKFGLYYISF 147 (477)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~----~~~~~A~~~gIP~v~~ 147 (477)
+.+.+. +. ...+..+++. ...+..+++.+.. ++|+||.|.-.. -+..+++..+..++++
T Consensus 604 l~~lp~--g~-----~~~~~~ell~------s~~~~~ll~~l~~---~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vv 666 (719)
T PRK11519 604 FDLIPR--GQ-----VPPNPSELLM------SERFAELVNWASK---NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVA 666 (719)
T ss_pred EEEEeC--CC-----CCCCHHHHhh------HHHHHHHHHHHHh---cCCEEEEeCCCcccchHHHHHHHHCCeEEEEE
Confidence 333322 11 1122223221 3346777777765 899999997543 2566778888776665
No 207
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=67.71 E-value=45 Score=29.90 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQG--FTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~ 45 (477)
||||+++..+..+=+. +|.+.+.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 7999999998744443 5666677654 778776444
No 208
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=67.23 E-value=16 Score=34.29 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=33.2
Q ss_pred eEEEeeccHHHhhccCCCCccccccCCchhhHHHhcCcceecccc
Q 011789 343 SMIITWCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPL 387 (477)
Q Consensus 343 v~v~~~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 387 (477)
+.+..-++-.+|+.+++. +||-.+. +-.||+.+|+|++++.-
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 344457888899999997 7776654 77899999999999763
No 209
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=66.87 E-value=44 Score=33.22 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCCCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 5 KTQKPHAIFIS-YPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 5 ~~~~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.+.+++|+++- .|..|. .+|+.|.++||+|+++....
T Consensus 95 ~~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred CcccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 34668999987 777775 58899999999999998543
No 210
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.40 E-value=81 Score=26.77 Aligned_cols=139 Identities=11% Similarity=0.121 Sum_probs=68.4
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCcc
Q 011789 284 VLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGF 363 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ 363 (477)
.|.|-+||.. +....+++...|+..|..+-+.+.+. ...|+.+.+- +. -+.+..+++|
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa-------HR~p~~l~~~----------~~---~~~~~~~~vi 59 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA-------HRTPERLLEF----------VK---EYEARGADVI 59 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T-------TTSHHHHHHH----------HH---HTTTTTESEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec-------cCCHHHHHHH----------HH---HhccCCCEEE
Confidence 4556667765 56778889999999998776665544 2344432211 11 1111123348
Q ss_pred ccccCCchhhHHHh---cCcceeccccccchhhHHH---HHHhh-hcceeeecCCC-CcCHHHHHHHHHHHhcCCchHHH
Q 011789 364 LTHCGWNSVLEGLW---CGVPLLCFPLYTDQFTNRK---LAVDD-WNVGLNLSNEK-VITKEEVSKNVHLLMGEKSGAKY 435 (477)
Q Consensus 364 ItHgG~gs~~eal~---~GvP~v~~P~~~DQ~~na~---~v~~~-~G~G~~~~~~~-~~~~~~l~~~i~~~l~~~~~~~~ 435 (477)
|.=.|...-+-++. .-.|+|.+|....+..... .+.+. -|+++..-.=+ -.++..+...|- -+.|+ ++
T Consensus 60 Ia~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~IL-a~~d~---~l 135 (150)
T PF00731_consen 60 IAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARIL-ALKDP---EL 135 (150)
T ss_dssp EEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHH-HTT-H---HH
T ss_pred EEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHH-hcCCH---HH
Confidence 88777643333332 3579999998766443222 22222 14544331001 122233332221 14577 89
Q ss_pred HHHHHHHHHHHHH
Q 011789 436 RNAAKQVKKAMEY 448 (477)
Q Consensus 436 ~~~a~~l~~~~~~ 448 (477)
+++.+..++++++
T Consensus 136 ~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 136 REKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9988888888875
No 211
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=65.33 E-value=21 Score=30.67 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=55.9
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCc---chhh----hc-cCCCCCCccccccccCCCCCeEEEe
Q 011789 11 AIFISYPLQGHVNP----SVQLALKLASQ-GFTITFVNTHF---IHQQ----MT-KASPEMGSDIFAGVRKSGLDIRYMT 77 (477)
Q Consensus 11 il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~---~~~~----~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (477)
|+++.--..|.++| .+..|++|++. |.+|+.++... ..+. +. .|.+ +...
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d-----------------~v~~ 64 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGAD-----------------KVYH 64 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTES-----------------EEEE
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCc-----------------EEEE
Confidence 33443333555555 68889999976 78888876553 3333 22 4443 2333
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc---chHHHHHHhCCceEEEec
Q 011789 78 LSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~---~~~~~A~~~gIP~v~~~~ 149 (477)
+++... ...+. ......+.+++++. +||+|++..-.. .+..+|.++|.|++.-..
T Consensus 65 ~~~~~~----~~~~~--------~~~a~~l~~~~~~~-----~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 65 IDDPAL----AEYDP--------EAYADALAELIKEE-----GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp EE-GGG----TTC-H--------HHHHHHHHHHHHHH-----T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred ecCccc----cccCH--------HHHHHHHHHHHHhc-----CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 332100 00011 11222344455554 999999886544 467799999999988643
No 212
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=63.57 E-value=61 Score=30.40 Aligned_cols=98 Identities=10% Similarity=-0.017 Sum_probs=52.6
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHH
Q 011789 25 SVQLALKLASQ---GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLH 101 (477)
Q Consensus 25 ~l~La~~L~~r---Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (477)
+.+|+++|.+. |++|+++.+...+.-.+... ++...+++..+.++. ..-.+.+.+-...-
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai------------T~~~pl~~~~~~~~~---yav~GTPaDCV~la-- 78 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI------------SYTHPMMIAELGPRR---FAAEGSPADCVLAA-- 78 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc------------cCCCCeEEEEeCCCe---EEEcCchHHHHHHH--
Confidence 45667777663 47999888887776653311 222255555554221 11222222222111
Q ss_pred HhHHHHHHHHHHhHhcCCCccEEEecCC----------Cc---chHHHHHHhCCceEEEec
Q 011789 102 VFSAHAEEVIGQIVRSGENVHCLIADTY----------FV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 102 ~~~~~~~~ll~~~~~~~~~pD~iI~D~~----------~~---~~~~~A~~~gIP~v~~~~ 149 (477)
+..++. .. +||+||+..- +. ++..-|..+|||.+.++.
T Consensus 79 -----l~~~~~---~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 -----LYDVMK---DA--PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred -----HHHhcC---CC--CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 222222 12 8999997542 22 344456788999999954
No 213
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.53 E-value=21 Score=39.00 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=67.1
Q ss_pred EEeeccHHH---hhccCCCCccccc---cCCc-hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHH
Q 011789 345 IITWCCQTS---VLAHPAIGGFLTH---CGWN-SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKE 417 (477)
Q Consensus 345 v~~~~p~~~---lL~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~ 417 (477)
+.+++++.+ +++.+++ |+.- -|+| ++.|++++|+|-..+|...+--.- ..++ .-|+.+ ...+.+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~---~~~l-~~~llv---~P~d~~ 416 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA---AAEL-AEALLV---NPNDIE 416 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccch---hHHh-CcCeEE---CCCCHH
Confidence 446788775 7788887 5543 3654 788999997752222222221111 1123 336777 456899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 011789 418 EVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTR 470 (477)
Q Consensus 418 ~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 470 (477)
.++++|.++|+++.. +.+++.+++.+.+. .-+...-+++|++.+.+.
T Consensus 417 ~la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 417 GIAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 999999999986511 34444444444443 345666777777777654
No 214
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=63.37 E-value=9.4 Score=38.98 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 011789 371 SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKA 445 (477)
Q Consensus 371 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~ 445 (477)
++.||+++|+|++. .++..-+..++.. --|...+.+ .-....++.++.++..|+ +++.++.+=+.+
T Consensus 381 v~IEAMa~glPvvA----t~~GGP~EiV~~~-~tG~l~dp~-~e~~~~~a~~~~kl~~~p---~l~~~~~~~G~~ 446 (495)
T KOG0853|consen 381 VPIEAMACGLPVVA----TNNGGPAEIVVHG-VTGLLIDPG-QEAVAELADALLKLRRDP---ELWARMGKNGLK 446 (495)
T ss_pred eeHHHHhcCCCEEE----ecCCCceEEEEcC-CcceeeCCc-hHHHHHHHHHHHHHhcCH---HHHHHHHHHHHH
Confidence 78999999999987 5666667777766 678888310 333347999999999999 877666544433
No 215
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=62.46 E-value=65 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhh-cc
Q 011789 25 SVQLALKLASQGFTITFVNTHFIHQQM-TK 53 (477)
Q Consensus 25 ~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~ 53 (477)
++.+++.|.+.|++| ++|. ...+.+ ..
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC
Confidence 468999999999998 3444 445555 55
No 216
>PRK05973 replicative DNA helicase; Provisional
Probab=62.36 E-value=45 Score=30.80 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
-+++..-|+.|=..-.+.++..-+.+|+.|.|++.....+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 456677789999999999999998899999999988776555
No 217
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.07 E-value=46 Score=34.10 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=28.8
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
|.+|++... .+-|=..-...|++.|+++|++|..+=+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 445665544 4568888899999999999999998755
No 218
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.05 E-value=12 Score=36.26 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
.+.+|||+++-.|+.| ..+|..|++.||+|+++.....
T Consensus 2 ~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 2 DSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCH
Confidence 4566899999888887 4567889999999999987653
No 219
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=61.75 E-value=45 Score=33.79 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.|+.++..+.. .+.+++.|.+-|-+|..+++..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~ 318 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAI 318 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCC
Confidence 37777776665 8889999999999999987663
No 220
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.24 E-value=20 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=35.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.|+++.+.+..-|-.-...|+..|.++||+|.++......+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 3789999999999999999999999999999998665543333
No 221
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.23 E-value=33 Score=29.01 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=51.0
Q ss_pred cccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 011789 385 FPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE-KSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQF 463 (477)
Q Consensus 385 ~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 463 (477)
.|....+-.+|+.+.+. --++. .-..+.|.+.+.+++.| + +-+-++.+++..+.++ |......+.++
T Consensus 78 yPWt~~~L~aa~el~ee-~eeLs-----~deke~~~~sl~dL~~d~P---kT~vA~~rfKk~~~K~---g~~v~~~~~dI 145 (158)
T PF10083_consen 78 YPWTENALEAANELIEE-DEELS-----PDEKEQFKESLPDLTKDTP---KTKVAATRFKKILSKA---GSIVGDAIRDI 145 (158)
T ss_pred CchHHHHHHHHHHHHHH-hhcCC-----HHHHHHHHhhhHHHhhcCC---ccHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 47777888888887776 22222 23457788899999865 7 7888899999999886 55555555555
Q ss_pred HHHHHHh
Q 011789 464 IKDLKTR 470 (477)
Q Consensus 464 ~~~~~~~ 470 (477)
+-++...
T Consensus 146 lVdv~SE 152 (158)
T PF10083_consen 146 LVDVASE 152 (158)
T ss_pred HHHHHHH
Confidence 5444433
No 222
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=60.04 E-value=1.1e+02 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=26.1
Q ss_pred EEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCCc
Q 011789 12 IFISYPLQGHVNPSV-QLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 12 l~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~~ 46 (477)
..+.+...+.+..++ .+|.+|.++|++|.=++...
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 445566667777754 68999999999998776554
No 223
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=59.44 E-value=15 Score=32.55 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=35.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+||++--.|+.|=+.-.+.+.++|.++|++|+++.++......
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~ 43 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTD 43 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHH
Confidence 4788888888887777789999999999999999888876443
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.35 E-value=1.2e+02 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
-|.+++..+.|=....+.+|-+.+.+|++|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467788889999999999999999999999993
No 225
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=58.32 E-value=82 Score=26.87 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 16 YPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 16 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
.++.|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456788888999999999999999885
No 226
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=58.10 E-value=10 Score=33.52 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNP------------SVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+||++...|++=++.| -..||+++..||++|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4555555555444443 4689999999999999999985
No 227
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=58.04 E-value=27 Score=32.89 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=58.4
Q ss_pred CcEEEEEecccc---cCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeE-EEee--ccHH-H
Q 011789 282 GSVLYVSFGSYA---HVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSM-IITW--CCQT-S 353 (477)
Q Consensus 282 ~~~I~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~-v~~~--~p~~-~ 353 (477)
++.|.+..|+.. ..+.+.+.++++.+...++++++..+.+. ...-+.+.+.. ..++. +.+- +.+. .
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e------~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~ 194 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAE------RELAEEIAAALGGPRVVNLAGKTSLRELAA 194 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhh------HHHHHHHHHhcCCCccccCcCCCCHHHHHH
Confidence 457888888753 45667888888888877888776543221 01111222222 12222 2222 3333 4
Q ss_pred hhccCCCCccccccCCchhhHHHhcCcceecc
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCF 385 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 385 (477)
++.++++ +|+.-. |.++-|.+.|+|++++
T Consensus 195 li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 195 LLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 8899997 998854 6777788999999876
No 228
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=57.48 E-value=13 Score=32.10 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVN 43 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 43 (477)
||||.|+-.|..| ..+|+.|.++||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 7999999998777 478999999999999875
No 229
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=57.12 E-value=69 Score=32.61 Aligned_cols=25 Identities=28% Similarity=0.463 Sum_probs=21.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|.... ...+|+++|||++.+
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 8999998863 678999999999887
No 230
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=56.65 E-value=70 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=26.1
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccC
Q 011789 13 FISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKA 54 (477)
Q Consensus 13 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g 54 (477)
|++.... +-.-++.+++.|.+.|++| ++++...+.+ ..|
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~g 43 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL--YATEGTADFLLENG 43 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHcC
Confidence 4444433 4556889999999999888 3555656565 553
No 231
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=56.33 E-value=68 Score=32.01 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC-cchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQG-FTITFVNTH-FIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~-~~~~~~ 51 (477)
||+|+++-.|..|+ .+|.-|+++| ++|++++-. .....+
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i 41 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARI 41 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 78999998877775 4789999999 999999866 444444
No 232
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=56.29 E-value=1.4e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
-|.+++..+.|=..-.+.+|-+.+.+|++|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 467778889999999999999999999999654
No 233
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=55.85 E-value=96 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.+++|+++-.|..|. .+|+.|.++||.|.++.........
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATL 41 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHH
Confidence 468999999888886 4799999999999999888877655
No 234
>PRK14098 glycogen synthase; Provisional
Probab=55.79 E-value=20 Score=37.20 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 5 KTQKPHAIFISYP------LQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 5 ~~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
...||||+|++.- +.|=..-.-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3456999998752 22333346678899999999999998844
No 235
>PRK06988 putative formyltransferase; Provisional
Probab=55.52 E-value=70 Score=30.92 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
||||+|+..+.. .+...+.|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcCC
Confidence 689999966653 3566778888999988776653
No 236
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=55.22 E-value=1e+02 Score=31.13 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|... .+..+|+++|||++.+
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEe
Confidence 999999873 4678999999999987
No 237
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.82 E-value=24 Score=28.70 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=36.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||++.+.++..|-.-..-++.-|...|++|.++....-.+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 689999999999999999999999999999999876554444
No 238
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=54.65 E-value=59 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.8
Q ss_pred CCccEEEe-cCCCc-chHHHHHHhCCceEEEecch
Q 011789 119 ENVHCLIA-DTYFV-WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 119 ~~pD~iI~-D~~~~-~~~~~A~~~gIP~v~~~~~~ 151 (477)
..||+||+ |+..- .+..=|.++|||.|.+.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 37999774 54333 67888999999999996553
No 239
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=53.80 E-value=15 Score=36.26 Aligned_cols=98 Identities=11% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCeEEEe-eccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHH----HHHhhhcceeeecCCCCc
Q 011789 340 ADRSMIIT-WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRK----LAVDDWNVGLNLSNEKVI 414 (477)
Q Consensus 340 ~~nv~v~~-~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~----~v~~~~G~G~~~~~~~~~ 414 (477)
.+++..+. ..+-.++|..+++ +||--. ..+.|.+..++|++....-.|++...+ -.+.. .-|..+ -
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~-~pg~~~-----~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEED-LPGPIV-----Y 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTS-SSS-EE-----S
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhh-CCCcee-----C
Confidence 35666654 5567789999998 999884 488999999999998776555542221 01111 223333 4
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~ 448 (477)
+.++|.++|..+++++ ..++++.++..+++-.
T Consensus 322 ~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 322 NFEELIEAIENIIENP--DEYKEKREKFRDKFFK 353 (369)
T ss_dssp SHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST
T ss_pred CHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC
Confidence 7899999999988764 1456666777777754
No 240
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=53.63 E-value=10 Score=32.38 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=27.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
||.++-.|..|+ ++|..|+.+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777777776 78999999999999999886
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.11 E-value=20 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+.+|||.|+-.|..| ..+|..|+++||+|+++....
T Consensus 2 ~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 2 HHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCH
Confidence 457899999888887 467899999999999998753
No 242
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=52.98 E-value=24 Score=33.73 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|||+|+--|+.|=..-.+.||..|+++|++|.++=.....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 6899999999999999999999999999999988655543
No 243
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=52.89 E-value=93 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=26.1
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 011789 11 AIFISY-PLQGHVNPSVQLALKLASQGFTITFVN 43 (477)
Q Consensus 11 il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~ 43 (477)
|++.+. ...|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344433 467999999999999999999998853
No 244
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=52.78 E-value=1.9e+02 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=31.7
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISY--PLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|++|.++.. |+.|=-.....||..|+.+|++|.++-..+.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 566666654 5888888899999999999999999865543
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=52.48 E-value=22 Score=33.18 Aligned_cols=46 Identities=11% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhc
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMT 52 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~ 52 (477)
....++|+-.+|.|=..=..+||.+|..+|+.|+|++.+.+...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 4467899999998888889999999998899999999999988883
No 246
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=52.45 E-value=1.6e+02 Score=25.82 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=31.1
Q ss_pred Ccceeccccc----cch---hhHHHHHHhhhcceeeecC----------CC-CcCHHHHHHHHHHHhc
Q 011789 379 GVPLLCFPLY----TDQ---FTNRKLAVDDWNVGLNLSN----------EK-VITKEEVSKNVHLLMG 428 (477)
Q Consensus 379 GvP~v~~P~~----~DQ---~~na~~v~~~~G~G~~~~~----------~~-~~~~~~l~~~i~~~l~ 428 (477)
++|++++|-. ... -.|..++++. |+=+.-.. .. -.+.++|.+.+.+.++
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 4567777777 76555432 11 3466777777766553
No 247
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.02 E-value=1.7e+02 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=23.6
Q ss_pred HHHHHHHhHhcCCCccEEEecCCC--cchHHHH----HHhCCceEEEecc
Q 011789 107 AEEVIGQIVRSGENVHCLIADTYF--VWPSKLA----KKFGLYYISFWTE 150 (477)
Q Consensus 107 ~~~ll~~~~~~~~~pD~iI~D~~~--~~~~~~A----~~~gIP~v~~~~~ 150 (477)
...++++| +||++|+-.-. ..++..| +..|||+|+++-.
T Consensus 52 ~~~~~~~~-----~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 52 VKKMLEEW-----KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHhh-----CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCC
Confidence 33455666 88987754322 2444444 4559999998544
No 248
>PRK00784 cobyric acid synthase; Provisional
Probab=51.25 E-value=2e+02 Score=29.81 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred CcE-EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 8 KPH-AIFISY-PLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 8 ~~~-il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
||+ |++... ..-|=..-...|++.|+++|++|..+=+
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 344 555533 3569999999999999999999987633
No 249
>PRK08506 replicative DNA helicase; Provisional
Probab=51.23 E-value=1.7e+02 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|...+..|+.|.|++.....+.+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 56667789999999999999988889999999988876665
No 250
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=51.15 E-value=1.1e+02 Score=24.36 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-cc
Q 011789 21 HVNPSVQLALKLASQGFTITFVNTHFIHQQM-TK 53 (477)
Q Consensus 21 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~ 53 (477)
+=.-++.+++.|.+.|+++ +.++...+.+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~ 41 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA 41 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc
Confidence 4455889999999999988 3555555566 55
No 251
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=51.04 E-value=35 Score=30.48 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
..-||++.+.++..|-....-++..|..+|++|++++...-.+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 446999999999999999999999999999999999877765555
No 252
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.61 E-value=46 Score=33.44 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.+..|+++-.=+.|-.-..-.||+.|..+|+.|.+++.+.++.-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 456778888889999999999999999999999999988886554
No 253
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=50.60 E-value=26 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||+++++-.|-.| -.||++|+..||+|++.+...-....
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~~~~~ 39 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGPKALA 39 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCChhHHH
Confidence 6777776555444 47899999999999999766654443
No 254
>CHL00067 rps2 ribosomal protein S2
Probab=50.54 E-value=92 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=25.4
Q ss_pred CCccEEEecCCCc--chHHHHHHhCCceEEEecchh
Q 011789 119 ENVHCLIADTYFV--WPSKLAKKFGLYYISFWTESA 152 (477)
Q Consensus 119 ~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~~ 152 (477)
..||+||+-...- .+..-|.++|||.|++.-+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 3799887544333 688889999999999965543
No 255
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=50.43 E-value=79 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=24.8
Q ss_pred CCccEEEe-cCCCc-chHHHHHHhCCceEEEecch
Q 011789 119 ENVHCLIA-DTYFV-WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 119 ~~pD~iI~-D~~~~-~~~~~A~~~gIP~v~~~~~~ 151 (477)
..||+||+ |+..- .+..=|.++|||.|.+.-+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 37999775 54333 67888999999999996543
No 256
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=50.41 E-value=19 Score=35.19 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||.|+-.|..|. .+|..|+++||+|+++......+.+
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~ 40 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDEL 40 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHH
Confidence 58999998888874 5788899999999999875433444
No 257
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.14 E-value=1e+02 Score=27.56 Aligned_cols=159 Identities=12% Similarity=0.079 Sum_probs=81.3
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcC-CCeEEEeeccHHHhhccCC
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVA-DRSMIITWCCQTSVLAHPA 359 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~nv~v~~~~p~~~lL~~~~ 359 (477)
.+.++.|..|.++ ...+..|...|..+.+. ... +.+.+.+..+ .++...........+..++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~---------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE---------LTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC---------CCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 4568888877765 23355555667665544 222 2222222222 2454444444455677777
Q ss_pred CCccccccCCchhhHHHh----cCcceeccccccchhhHH-----HHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhc
Q 011789 360 IGGFLTHCGWNSVLEGLW----CGVPLLCFPLYTDQFTNR-----KLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMG 428 (477)
Q Consensus 360 ~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~ 428 (477)
+ +|.--+-..+.+.++ .++++-+ .|.+..+ ..+.+- ++-+.+..++ ..-+..|++.|+.++.
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~ 145 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYD 145 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcc
Confidence 6 888777666666554 4555433 3443332 223333 4444442111 2233556767776663
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 011789 429 EKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFI 464 (477)
Q Consensus 429 ~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 464 (477)
++...+-+.+.++++.+++....+......+++++
T Consensus 146 -~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 146 -ESYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred -hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 22246777788888888764322222233444444
No 258
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=50.11 E-value=26 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+|.++.-|+-|-.--.+.||..|+++|++|.++=..+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 68888888999999999999999999999999885443
No 259
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=49.95 E-value=1.9e+02 Score=27.89 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=57.3
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCC
Q 011789 9 PHAIFISYPLQG-----HVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLP 83 (477)
Q Consensus 9 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (477)
.-|+|.|..+.| ...-+..|++.|.++|++|.+++++...+....... .. .-....+..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-----------~~--~~~~~~l~g--- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-----------LL--PGELRNLAG--- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-----------hC--CcccccCCC---
Confidence 345555544333 233588999999989999999988766554322100 00 000000000
Q ss_pred CCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 84 LGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
..+ ..++..+++ +-|++|+. ..+...+|..+|+|.|.++.
T Consensus 239 -----~~s------------L~el~ali~-------~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 -----ETS------------LDEAVDLIA-------LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -----CCC------------HHHHHHHHH-------hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 001 112223333 55999976 55688999999999999854
No 260
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=49.89 E-value=1e+02 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
+|||+++..|++.| +|++.|++.|++|.++...
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~ 34 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGH 34 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 58999998888887 5788898889877777543
No 261
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=49.87 E-value=58 Score=33.04 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|.+.. ...+|+++|+|++.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 8999999963 478899999999876
No 262
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.45 E-value=1.2e+02 Score=33.13 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=68.3
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh----ccCCCCCCccccccccCCC--------CC
Q 011789 7 QKPHAIFISY--PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM----TKASPEMGSDIFAGVRKSG--------LD 72 (477)
Q Consensus 7 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~--------~~ 72 (477)
...|++.++. |+.|=..-.+.||..|+..|++|.++-.+.....+ ........+++..+...+. ++
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 3446666665 46677777889999999999999998655433222 1111112333433322211 13
Q ss_pred eEEEecCCCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcc----hHHHHHHhCCceEEE
Q 011789 73 IRYMTLSDGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVW----PSKLAKKFGLYYISF 147 (477)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~----~~~~A~~~gIP~v~~ 147 (477)
+.+++. +. ...+..+++. ...+..+++.+.+ ++|+||.|.-... +..+|...+.-++++
T Consensus 609 l~vl~~--g~-----~~~~p~ell~------~~~~~~ll~~l~~---~yD~IIIDtPP~~~~~Da~~la~~ad~~llVv 671 (726)
T PRK09841 609 FDVITR--GQ-----VPPNPSELLM------RDRMRQLLEWAND---HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVA 671 (726)
T ss_pred EEEEeC--CC-----CCCCHHHHhC------cHHHHHHHHHHHh---cCCEEEEeCCCccccchHHHHHHhCCeEEEEE
Confidence 333322 11 1112222221 2345667777655 8999999975442 456676666554444
No 263
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=49.37 E-value=30 Score=30.89 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCccCHHHHHHH-HHHHHh-CCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQL-ALKLAS-QGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~L-a~~L~~-rGh~Vt~~~~~ 45 (477)
||||+++-+...||..-+... ++.+.+ .|++|.++..+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 579999988889999998875 555666 89999887654
No 264
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.10 E-value=21 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||++--.|+-|-+. ...|.+.|+++|++|.++.++.....+
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 35555555555444 489999999999999999999998887
No 265
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=48.68 E-value=1.7e+02 Score=27.70 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 26 VQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 26 l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.++|..|+++|++|.+++..+....-
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 46888999999999999988776443
No 266
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.43 E-value=2.8e+02 Score=27.26 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=56.7
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCccccccCCc-----hhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecC
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLTHCGWN-----SVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSN 410 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~ItHgG~g-----s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~ 410 (477)
++++|....-+|..+ +|..+.. =-|+=|| ++.|.+++|.=+|+--..+--.+ ++.- -.|...
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~i---Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lD----IV~~-~~G~~t-- 404 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATI---GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLD----IVTP-WDGETT-- 404 (465)
T ss_pred CccceEEEecCCHHHHHHHhcccee---ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCcee----eeec-cCCccc--
Confidence 457888888888876 5555543 2233333 78999999974433211111110 1111 122222
Q ss_pred CC--CcCHHHHHHHHHHHhcC-Cc-hHHHHHHHHHHHHHHHH
Q 011789 411 EK--VITKEEVSKNVHLLMGE-KS-GAKYRNAAKQVKKAMEY 448 (477)
Q Consensus 411 ~~--~~~~~~l~~~i~~~l~~-~~-~~~~~~~a~~l~~~~~~ 448 (477)
+ -.+.++-++++.+++.+ .+ ...++++|++-.+++.+
T Consensus 405 -GFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 405 -GFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred -eeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 2 45778888888888653 32 35578888877777765
No 267
>PRK14099 glycogen synthase; Provisional
Probab=47.83 E-value=29 Score=35.87 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=29.6
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 7 QKPHAIFISYP------LQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 7 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+.|||+|++.- +.|=..-.-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45899998752 22333345678899999999999998854
No 268
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=47.78 E-value=30 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|+|.++.-|+-|=..-.+.||..|+++|++|.++=-.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6788887789999999999999999999999988433
No 269
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=47.38 E-value=26 Score=32.18 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011789 26 VQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 26 l~La~~L~~rGh~Vt~~~~~ 45 (477)
..||++|.++||+|+++..+
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57889999999999998754
No 270
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=47.24 E-value=1.4e+02 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=23.6
Q ss_pred CccEEEecCCCc---chHHHHHHhCCceEEEe
Q 011789 120 NVHCLIADTYFV---WPSKLAKKFGLYYISFW 148 (477)
Q Consensus 120 ~pD~iI~D~~~~---~~~~~A~~~gIP~v~~~ 148 (477)
+||+|++..-.. .+..+|.++|.|++.=.
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 899999876554 57889999999988753
No 271
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=46.94 E-value=1.7e+02 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=21.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 17 PLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 17 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|++|=+- -.|..+|.+.||+||+++-....
T Consensus 5 GgTGlIG--~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 5 GGTGLIG--RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred ccccchh--HHHHHHHHhCCCeEEEEEcCCcc
Confidence 3444333 35788899999999999865543
No 272
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.86 E-value=36 Score=28.51 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.+.||++.+.+.-||-.-.--+++.|++.|.+|.+...-...+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 578999999999999999999999999999999998766666655
No 273
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.82 E-value=75 Score=31.27 Aligned_cols=95 Identities=15% Similarity=0.265 Sum_probs=52.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCch-hHHH-hcCC-CeE-EEee---------c-
Q 011789 284 VLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPE-DFKK-EVAD-RSM-IITW---------C- 349 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~-~~~~-~~~~-nv~-v~~~---------~- 349 (477)
+++.+.||-.+..+. -++++.|++.++.+.|....... +...+|. ++.- .++. .+. ...| +
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~---e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGI---EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcc---ccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 666666676554443 44667777788999998765533 2223332 1100 0000 000 0000 0
Q ss_pred ---cHHHhhcc--CCCCccccccCCch---hhHHHhcCcceecc
Q 011789 350 ---CQTSVLAH--PAIGGFLTHCGWNS---VLEGLWCGVPLLCF 385 (477)
Q Consensus 350 ---p~~~lL~~--~~~~~~ItHgG~gs---~~eal~~GvP~v~~ 385 (477)
--..++.+ +++ +|++||+=| +..|...|+|+++.
T Consensus 79 ~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 79 GVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 00123433 555 999999986 89999999999773
No 274
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=46.82 E-value=29 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||++.-.|+.| .+-...+.+.|.++|++|.++.++.....+
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 66666666554 556679999999999999999999877766
No 275
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=46.64 E-value=76 Score=31.05 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=57.0
Q ss_pred cEEEEEcCCCccC-----HHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCe--EEEecCCC
Q 011789 9 PHAIFISYPLQGH-----VNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDI--RYMTLSDG 81 (477)
Q Consensus 9 ~~il~~~~~~~GH-----~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~l~~~ 81 (477)
.-|+|.|..+.|- ..-+.+|++.|.++|++|.+.+.+...+....... ..+... +...+..
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-----------~~~~~~~~~~~~l~g- 248 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-----------ALNTEQQAWCRNLAG- 248 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-----------hcccccccceeeccC-
Confidence 3466666433221 23478999999988999999888766554422100 000000 0000100
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 82 LPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
..+ -.++..+++ +.|++|+. ..+...+|..+|+|.+.++.
T Consensus 249 -------~~s------------L~el~ali~-------~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 249 -------ETQ------------LEQAVILIA-------ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred -------CCC------------HHHHHHHHH-------hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 001 111223333 56899976 55689999999999999854
No 276
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=46.62 E-value=1.2e+02 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.6
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 15 SYPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 15 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
+..+.|-.--.+.|.++|++||++|.=+
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4457789999999999999999998643
No 277
>PHA02542 41 41 helicase; Provisional
Probab=46.58 E-value=75 Score=32.75 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+++..-|+.|=..-.+.+|...++.|+.|.|++-....+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45667789999999999999998889999999877766544
No 278
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.55 E-value=1.9e+02 Score=24.97 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=49.9
Q ss_pred CCcEEEEcchhhccHHHHHHHHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHH
Q 011789 220 NADYVLCNTVHELESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKR 298 (477)
Q Consensus 220 ~~~~~l~~s~~~l~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~ 298 (477)
....+++.+.++.-......++...| +..+|-....-..... +++.+.+.+..+ .+|+|++|+=-+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~--------~~i~~~I~~~~p-div~vglG~PkQ---- 114 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEE--------EAIINRINASGP-DIVFVGLGAPKQ---- 114 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhH--------HHHHHHHHHcCC-CEEEEECCCCHH----
Confidence 34667777776665555556677778 7666654432221111 677777877544 599999987532
Q ss_pred HHHHHHHH-HHhCCCeEEEEEcCC
Q 011789 299 DLIEIANG-IAKSKVTFIWILRPD 321 (477)
Q Consensus 299 ~~~~~~~a-l~~~~~~~i~~~~~~ 321 (477)
+.++.. ....+..++..+++.
T Consensus 115 --E~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 115 --ERWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred --HHHHHHHHHHCCCCEEEEECch
Confidence 222222 234566655555543
No 279
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=46.43 E-value=47 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhHhcCCCccEEEecCCCcc----------hHHHHHHhCCceEEE
Q 011789 103 FSAHAEEVIGQIVRSGENVHCLIADTYFVW----------PSKLAKKFGLYYISF 147 (477)
Q Consensus 103 ~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~----------~~~~A~~~gIP~v~~ 147 (477)
....+.++++++ +||++|+.+.+.. +..+.++++||.+.-
T Consensus 68 a~~~i~~mv~~~-----~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKL-----KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhc-----CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 344445555555 9999999987653 223567999998864
No 280
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=46.35 E-value=1.3e+02 Score=31.10 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFI 47 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 47 (477)
|||+++..|++.| +|++.|++. |++|..+..+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 7999999999888 477888876 899888855444
No 281
>PRK13768 GTPase; Provisional
Probab=46.07 E-value=89 Score=29.11 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=31.3
Q ss_pred CcEE-EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 8 KPHA-IFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 8 ~~~i-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
||++ ++...++.|=..-...++..|..+|++|.++......
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 4444 5555567788888899999999999999998765543
No 282
>PRK08462 biotin carboxylase; Validated
Probab=46.06 E-value=1.1e+02 Score=31.16 Aligned_cols=38 Identities=3% Similarity=-0.053 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
+.|.||+++--+.. .+++.+++++.|++|..+.+....
T Consensus 2 ~~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d~ 39 (445)
T PRK08462 2 KEIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTADK 39 (445)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhhc
Confidence 45789988866543 578888888889998888766654
No 283
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.95 E-value=47 Score=27.61 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+.+|++-+.++-+|-.----++..|.+.|++|..+....-.+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 35899999999999999999999999999999999887765555
No 284
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.78 E-value=2.2e+02 Score=29.14 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.8
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|... ....+|+++|||++.+
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 899999863 3577889999999876
No 285
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=45.59 E-value=1.1e+02 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLA-SQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|..++ +.|+.|.|++.....+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 46667789999999999998887 679999999988766555
No 286
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=45.30 E-value=19 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCC
Q 011789 21 HVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKAS 55 (477)
Q Consensus 21 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~ 55 (477)
.+.-.+-|+..|.++||+|++++++.....+ .+.+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~vaDP 47 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVADP 47 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhcCC
Confidence 3444788999999999999999999999988 5543
No 287
>PRK10037 cell division protein; Provisional
Probab=45.30 E-value=36 Score=31.61 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=32.2
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+.|.|... |+-|=..-.+.||..|+++|++|.++=...
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 556666666 788999999999999999999999984444
No 288
>PRK07206 hypothetical protein; Provisional
Probab=45.03 E-value=62 Score=32.56 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|++|+++-..+. ...++++++++|+++.+++....
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 455666665433 34689999999999988886654
No 289
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=44.87 E-value=28 Score=33.65 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
||||.|+-.|..|. .+|..|+++||+|+++....
T Consensus 1 mmkI~iiG~G~mG~-----~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLGAGSWGT-----ALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCEEEEECCCHHHH-----HHHHHHHhCCCEEEEEECCH
Confidence 68999998887774 57888999999999987643
No 290
>PRK06904 replicative DNA helicase; Validated
Probab=44.64 E-value=1.2e+02 Score=31.29 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
|++...|+.|=..-.+.+|...+. .|+.|.|++.....+.+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 456677899999999999998875 59999999988877666
No 291
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=44.54 E-value=1.2e+02 Score=31.06 Aligned_cols=36 Identities=6% Similarity=-0.023 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|+||+++-.+.. .+.+++++.+.|++|..+.+....
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~d~ 37 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKELGIKTVAVHSTADR 37 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChhhc
Confidence 679998844433 488889999999999998766443
No 292
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=44.52 E-value=41 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=31.5
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|+.|++.+. ||.|=..=..+||..|++.|++|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 556666655 78899999999999999999999987433
No 293
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=44.40 E-value=41 Score=30.91 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCc-cCH---HHHHHHHHHHHhCCCeEEEEeCCcch--hhhccCCCCCCccccccccCCCCCeE--EEecC
Q 011789 8 KPHAIFISYPLQ-GHV---NPSVQLALKLASQGFTITFVNTHFIH--QQMTKASPEMGSDIFAGVRKSGLDIR--YMTLS 79 (477)
Q Consensus 8 ~~~il~~~~~~~-GH~---~p~l~La~~L~~rGh~Vt~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~l~ 79 (477)
...|+|.+..+. .-- .-+.+|++.|.++|..|.++..+... +.+..... +.. +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA---------------GLQNPVINLA 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT---------------THTTTTEEET
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH---------------hcccceEeec
Confidence 345677766544 222 22699999999999899888888872 22222111 110 11111
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecc
Q 011789 80 DGLPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTE 150 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~ 150 (477)
.. .+ +.. +..++. ..|++|+- ..+...+|..+|+|.+.++..
T Consensus 170 ~~--------~~----l~e--------~~ali~-------~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 GK--------TS----LRE--------LAALIS-------RADLVIGN--DTGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp TT--------S-----HHH--------HHHHHH-------TSSEEEEE--SSHHHHHHHHTT--EEEEESS
T ss_pred CC--------CC----HHH--------HHHHHh-------cCCEEEec--CChHHHHHHHHhCCEEEEecC
Confidence 10 11 111 222333 66999976 456899999999999999654
No 294
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=44.32 E-value=51 Score=29.86 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
...||++.+.++..|-....=++..|..+|++|++++...-.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 457999999999999999999999999999999999876655444
No 295
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.19 E-value=58 Score=32.22 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.+.-|+|+-.-+.|-.--.-.||..++.+|+.+.+++.+.|+.-.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 445677888889999999999999999999999999999886544
No 296
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=44.15 E-value=46 Score=30.49 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|.+|+++--|+-|----.-.++.+|++.||+|..+..++..+..
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDST 44 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADST 44 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchH
Confidence 67899999999999999999999999999999999988776554
No 297
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=44.05 E-value=1.1e+02 Score=29.42 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 47 (477)
||||++...++. + .++++|.+. ||+|..+.....
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCCc
Confidence 899999988544 2 788999988 498888866543
No 298
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=43.91 E-value=40 Score=31.83 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|.+|+|+--||-|=..-.+.||..|+++|++|.++=.+..
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 6788899778999999999999999999999988844443
No 299
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=43.71 E-value=1.6e+02 Score=23.15 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHH
Q 011789 20 GHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSS 98 (477)
Q Consensus 20 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (477)
++-.-++++++.|.+.|+++. +++...+.+ .. ++.+..+.... .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~------------------gi~~~~v~~~~-~-------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA------------------GIPVEVVNKVS-E-------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc------------------CCeEEEEeecC-C--------------
Confidence 355678899999999999983 455555566 55 44444433210 0
Q ss_pred HHHHhHHHHHHHHHHhHhcCCCccEEEecCC-------CcchHHHHHHhCCceEE
Q 011789 99 LLHVFSAHAEEVIGQIVRSGENVHCLIADTY-------FVWPSKLAKKFGLYYIS 146 (477)
Q Consensus 99 ~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~-------~~~~~~~A~~~gIP~v~ 146 (477)
....+.+++. + .++|+||.-.- .+.-...|-.+|||++.
T Consensus 55 ----~~~~i~~~i~---~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 ----GRPNIVDLIK---N--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ----CchhHHHHHH---c--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 0111222233 3 39999998432 23566789999999984
No 300
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=43.60 E-value=1.8e+02 Score=29.51 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFD 87 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (477)
.+|++++..+ .....+++.|.+.|-+|..+......+....... + ...
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~---------------~-~~~----------- 358 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPV---------------E-TVV----------- 358 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCc---------------C-cEE-----------
Confidence 4677766532 4668888889999999888776665443211000 1 000
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 88 RSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
..++ .++.++++.. ++|++|... ....+|+++|||++.+
T Consensus 359 -~~D~------------~~l~~~i~~~-----~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 359 -IGDL------------EDLEDLACAA-----GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred -eCCH------------HHHHHHHhhc-----CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 0111 1123334443 899999885 3578999999999986
No 301
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=43.56 E-value=3.4e+02 Score=26.85 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=34.8
Q ss_pred cCCCeEEEeeccHHH---hhccCCCCccccccC----CchhhHHHhcCcceecc
Q 011789 339 VADRSMIITWCCQTS---VLAHPAIGGFLTHCG----WNSVLEGLWCGVPLLCF 385 (477)
Q Consensus 339 ~~~nv~v~~~~p~~~---lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~ 385 (477)
+.+++.+.+-+|+++ +|.+.++ |++-.= .-++.||..||.|+|..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 458899999999886 7888887 776443 23678999999999864
No 302
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=43.55 E-value=1.1e+02 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.7
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 14 ISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 14 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
++.|+.|=.--.+.|++.|.++|++|.+++-....
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 46689999999999999999999999999876554
No 303
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.10 E-value=72 Score=31.09 Aligned_cols=99 Identities=14% Similarity=0.222 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEe-cCCC
Q 011789 8 KPHAIFISYPLQG-----HVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMT-LSDG 81 (477)
Q Consensus 8 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 81 (477)
+..|+|.|..+.| -..-+..|++.|.++|++|.+..++...+....... .+.... +.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~---------------~~~~~~~l~-- 237 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK---------------GLPNAVILA-- 237 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH---------------hcCCccccC--
Confidence 3567777763332 344589999999999999999998844444322111 010000 11
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecc
Q 011789 82 LPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTE 150 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~ 150 (477)
...+ +. ++..++. +-|++|+- ..+...+|..+|+|+|.++..
T Consensus 238 ------~k~s----L~--------e~~~li~-------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 238 ------GKTS----LE--------ELAALIA-------GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ------CCCC----HH--------HHHHHHh-------cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 1111 11 1222332 66888865 556889999999999999654
No 304
>PRK08006 replicative DNA helicase; Provisional
Probab=43.00 E-value=1.5e+02 Score=30.50 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
|++..-|+.|=..-.+.+|...+. .|+.|.|++.....+.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 456677899999999999998874 59999999988776655
No 305
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.97 E-value=2.5e+02 Score=25.18 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhc-CCCeEEEeeccHHHhhccCC
Q 011789 281 KGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEV-ADRSMIITWCCQTSVLAHPA 359 (477)
Q Consensus 281 ~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~nv~v~~~~p~~~lL~~~~ 359 (477)
.+++++|..|..+ ..-+..|...|..+.+.-. + ..+.+.+-. ..++.+..--.+...+..+.
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~---------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E---------LESELTLLAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C---------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcE
Confidence 3468888777665 2334556667777655432 2 112222211 13565543222344566666
Q ss_pred CCccccccCCchhhH-----HHhcCcceec--cccccchhhHHHHHHhhhcceeeecCCC--CcCHHHHHHHHHHHhcCC
Q 011789 360 IGGFLTHCGWNSVLE-----GLWCGVPLLC--FPLYTDQFTNRKLAVDDWNVGLNLSNEK--VITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 360 ~~~~ItHgG~gs~~e-----al~~GvP~v~--~P~~~DQ~~na~~v~~~~G~G~~~~~~~--~~~~~~l~~~i~~~l~~~ 430 (477)
+ +|..-|...+.+ |-..|+|+-+ -|-..| +..-..+.+- ++-+.+..+. ..-+..|++.|++++.+.
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~ 147 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPS 147 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchh
Confidence 6 788777764443 4457888833 222212 1222223333 3444442112 333466777777777533
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 011789 431 SGAKYRNAAKQVKKAMEYA 449 (477)
Q Consensus 431 ~~~~~~~~a~~l~~~~~~~ 449 (477)
...|-+.+.++++.++..
T Consensus 148 -~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 148 -LGDLATLAATWRDAVKKR 165 (205)
T ss_pred -HHHHHHHHHHHHHHHHhh
Confidence 125667777777777654
No 306
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.91 E-value=36 Score=32.77 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
..|||.|+-.|..|. .+|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCCC
Confidence 457999998887774 68999999999999887543
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.77 E-value=1.8e+02 Score=29.61 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.++++++-.+ . .- +++|+.|+++||+|++.....
T Consensus 5 ~k~v~iiG~g---~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAG---V-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCC---H-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 3577766433 3 22 499999999999999986643
No 308
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=42.73 E-value=34 Score=34.21 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=36.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+.+||++.-.|+.|= .-.+.+.+.|.+.|++|.++.++...+.+
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 356888887776665 55899999999999999999999988777
No 309
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=42.64 E-value=43 Score=33.61 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+++||++.-.|+. ..+-...|.+.|.++|++|.++.++.....+
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 4678888877766 4557899999999999999999999988777
No 310
>PRK05595 replicative DNA helicase; Provisional
Probab=42.20 E-value=87 Score=31.99 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLA-SQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|..++ +.|+.|.|++.....+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45566789999999999998876 569999999988766555
No 311
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.18 E-value=32 Score=32.85 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
|||+++-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888887777 4678889999999999987
No 312
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.15 E-value=40 Score=31.72 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=37.4
Q ss_pred CCCCccccccCCchhhHHHh------cCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 358 PAIGGFLTHCGWNSVLEGLW------CGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 358 ~~~~~~ItHgG~gs~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
+++ +|+-||=||+..++. .++|++.+-.. .+|-.. ..+.+++.+.+.++++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~----~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT----DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc----cCCHHHHHHHHHHHHcCC
Confidence 455 999999999999976 47888776521 233333 466777888888887654
No 313
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=41.89 E-value=80 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
||+|.++-.|++| .+||..|++.||+|++......
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 6899999999999 5799999999999999886554
No 314
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.48 E-value=34 Score=30.78 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+=|++..+|+.|-.-..-.||++|.+++|+|.-++...
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 556777788999999999999999999999987766543
No 315
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=41.32 E-value=45 Score=31.13 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|.+|.|+.-||-|=.--...||..|+++|++|.++=....
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 5578888778999999999999999999999999854443
No 316
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=41.25 E-value=56 Score=26.29 Aligned_cols=40 Identities=5% Similarity=0.051 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccCHHHHH---HHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSV---QLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~ 47 (477)
||||++++....|-...++ .|.++-+++||++.+=+....
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~ 44 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGAL 44 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 4899999998888888876 456666678999997654443
No 317
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=41.16 E-value=1.3e+02 Score=31.11 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.3
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|.. .....+|+++|||++..
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 89999997 45678999999999854
No 318
>PLN02470 acetolactate synthase
Probab=41.15 E-value=33 Score=36.49 Aligned_cols=92 Identities=11% Similarity=0.184 Sum_probs=54.8
Q ss_pred EecccccCC--HHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEe--------eccHHHhhcc
Q 011789 288 SFGSYAHVS--KRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIIT--------WCCQTSVLAH 357 (477)
Q Consensus 288 s~Gs~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~--------~~p~~~lL~~ 357 (477)
+|||....+ ....+.+++.|+..|.+.++-+.+... ..+=+.+.+ .++++++. ++=.-.-..+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~-----~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~t 74 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS-----MEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKAS 74 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc-----HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHh
Confidence 467764322 233677999999999999998876622 111122211 12343332 1111111222
Q ss_pred CCCCccccccCCc------hhhHHHhcCcceeccc
Q 011789 358 PAIGGFLTHCGWN------SVLEGLWCGVPLLCFP 386 (477)
Q Consensus 358 ~~~~~~ItHgG~g------s~~eal~~GvP~v~~P 386 (477)
...+++++|.|-| .+++|...++|||++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 3455688998854 7889999999999985
No 319
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=41.10 E-value=2.1e+02 Score=29.27 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=26.2
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 11 AIFIS-YPLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 11 il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
|++.. ..+-|=..-...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 34442 33567788899999999999999999854
No 320
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=41.10 E-value=34 Score=32.73 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|||+|+-.|+.|- .+|..|++.||+|+++..+...+.+
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVRPKRAKAL 38 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEecHHHHHHH
Confidence 6899998887774 5788899999999999874333333
No 321
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=40.90 E-value=40 Score=31.02 Aligned_cols=41 Identities=7% Similarity=-0.069 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQ--GFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~ 51 (477)
|++--.|+.+=+.-.+.|.+.|+++ ||+|.++.+....+.+
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 4444444444457899999999999 9999999999988777
No 322
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=40.86 E-value=52 Score=31.50 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
++|.+|.|+.-|+-|=..-.+.||-.|++.|++|.++-....
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 355566777678889999999999999999999999854443
No 323
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=40.83 E-value=2.8e+02 Score=26.15 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=24.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|||.|+-.|..| ..+|..|.++||+|+++....
T Consensus 1 m~I~IIG~G~mG-----~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 1 MKIGIVGLGLIG-----GSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred CeEEEEeecHHH-----HHHHHHHHHCCCEEEEEECCH
Confidence 578887554433 467888999999999887543
No 324
>PRK06321 replicative DNA helicase; Provisional
Probab=40.82 E-value=2.8e+02 Score=28.62 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
|++...|+.|=..-.+.+|...+. .|+.|.|++-....+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 466677899999999999999874 59999999988776655
No 325
>PRK06756 flavodoxin; Provisional
Probab=40.64 E-value=51 Score=27.64 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCccCHHHHHH-HHHHHHhCCCeEEEEeC
Q 011789 8 KPHAIFISYPLQGHVNPSVQ-LALKLASQGFTITFVNT 44 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~-La~~L~~rGh~Vt~~~~ 44 (477)
||+|+++=...+||..-+.. |++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 67888888888999998665 57888889999887643
No 326
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=39.81 E-value=1.6e+02 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.8
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
+.|++|+. ..+...+|..+|+|.|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 56999987 56789999999999999854
No 327
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=39.70 E-value=35 Score=31.80 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.0
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 9 PHAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 9 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
||.+|++.| +.|-=.-...|++.|+.||+.|+..=.+++-..
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNv 45 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNV 45 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccccc
Confidence 578888876 556667789999999999999999876665544
No 328
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=39.61 E-value=48 Score=31.21 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|+.|.|+--||.|=..-.+.||-+|+++|++|.++=..
T Consensus 1 m~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 1 MRKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 56788887789999999999999999999999998433
No 329
>PLN02939 transferase, transferring glycosyl groups
Probab=39.45 E-value=55 Score=36.61 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCCcEEEEEcCC-----CccCHH-HHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 5 KTQKPHAIFISYP-----LQGHVN-PSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 5 ~~~~~~il~~~~~-----~~GH~~-p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
+...|||+|++.- -.|-+. -.-.|.++|++.||+|.++++...
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 3567999998752 223333 356789999999999999998654
No 330
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.39 E-value=2.5e+02 Score=24.25 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhh-hccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCCCcHHHHHHHHHHHh
Q 011789 25 SVQLALKLASQGFTITFVNTHFIHQQ-MTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRSLNHEQFMSSLLHVF 103 (477)
Q Consensus 25 ~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (477)
+-.|.+...++|..|.+++.....-. +..... ...|++++....++.- .
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~-----------~~yP~l~ivg~~~g~f-------------------~ 86 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR-----------RRYPGLRIVGYHHGYF-------------------D 86 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH-----------HHCCCeEEEEecCCCC-------------------C
Confidence 44555566667899999887664322 111000 1112677765554311 1
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCCCc----chHHHHHHhCCceEEEecchhH
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTYFV----WPSKLAKKFGLYYISFWTESAL 153 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~~~----~~~~~A~~~gIP~v~~~~~~~~ 153 (477)
..+.+++++.+.++ +||+|++..-++ |.....++++.+ +.+....++
T Consensus 87 ~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 87 EEEEEAIINRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred hhhHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 22344556666654 999999998776 566677777777 555444443
No 331
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=39.36 E-value=53 Score=33.43 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=34.9
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 9 PHAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 9 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
||.+|++.| +.|-=.-...|++.|++||++||..=.+++-..
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNv 45 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNV 45 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceec
Confidence 578888887 667778899999999999999999877766544
No 332
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=39.00 E-value=1.2e+02 Score=29.31 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.0
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
+.|++|+. ..+...+|..+|+|.|.++.
T Consensus 253 ~a~l~I~n--DSGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 253 GAKAVVSV--DTGLSHLTAALDRPNITLYG 280 (322)
T ss_pred hCCEEEec--CCcHHHHHHHhCCCEEEEEC
Confidence 56999987 55789999999999999965
No 333
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=38.22 E-value=2.6e+02 Score=28.53 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|+||+++. .|.+ .+.+++++++.|++|..+.+...
T Consensus 2 ~kkili~g---~g~~--~~~~~~aa~~lG~~vv~~~~~~d 36 (449)
T TIGR00514 2 LDKILIAN---RGEI--ALRILRACKELGIKTVAVHSTAD 36 (449)
T ss_pred cceEEEeC---CCHH--HHHHHHHHHHcCCeEEEEEChhh
Confidence 56888873 3333 67788888889999999877544
No 334
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=37.94 E-value=2.6e+02 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=24.2
Q ss_pred CccEEEecCCCc---chHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFV---WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~---~~~~~A~~~gIP~v~~~~ 149 (477)
+||+|++..-.. .+..+|.++|.|++.-..
T Consensus 83 ~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 83 KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 899999876544 578899999999988644
No 335
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=37.91 E-value=2.9e+02 Score=24.53 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=54.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CC-cchhh-h-ccCCCCCCccccccccCCCCCeEEEecCCCCCC
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVN---TH-FIHQQ-M-TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPL 84 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~-~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (477)
|.+++..+.|-.-..+.+|-+-.-+|.+|.++- .. ..-+. . .... ..+.+...++++.-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~---------------~~v~~~~~~~g~tw 95 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFG---------------LGVEFHGMGEGFTW 95 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhc---------------cceeEEecCCceeC
Confidence 667777888887776666666666677777652 11 22222 2 2211 26888888876542
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc
Q 011789 85 GFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV 131 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~ 131 (477)
..... .. +. ......+....+.+.+. ++|+||.|-+++
T Consensus 96 ~~~~~---~~---d~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 96 ETQDR---EA---DI-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred CCcCc---HH---HH-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 21111 11 11 33334444444445443 999999998765
No 336
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=37.74 E-value=72 Score=29.84 Aligned_cols=30 Identities=3% Similarity=-0.116 Sum_probs=23.9
Q ss_pred CccEEEecCCCc------chHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFV------WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~------~~~~~A~~~gIP~v~~~~ 149 (477)
+||+|++...+. -+..+|+.+|+|++.+..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 799999865433 467799999999998744
No 337
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=37.54 E-value=4.8e+02 Score=28.91 Aligned_cols=153 Identities=10% Similarity=0.211 Sum_probs=92.4
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCC-----------------------CCCCCCchhHHHhc
Q 011789 283 SVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSS-----------------------DDPNPLPEDFKKEV 339 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~-----------------------~~~~~lp~~~~~~~ 339 (477)
.++|+++=.+-..+...++..++.+.+.|.+++..+|.+.... .+...+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 5899998888777777889999999999999999988653210 01112332222222
Q ss_pred CCCeEEEe-eccHHHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHH
Q 011789 340 ADRSMIIT-WCCQTSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEE 418 (477)
Q Consensus 340 ~~nv~v~~-~~p~~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 418 (477)
..++.+.. =-||..+ -+.|+|..--=++.+ .+|--.-|-.+..+ .+|+.. ..-..+.
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAM---G~~GTdV 709 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAM---GISGTDV 709 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceee---cCCccHh
Confidence 23333332 2244321 244555555444443 47777777777777 888777 3223333
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 011789 419 VSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLK 468 (477)
Q Consensus 419 l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 468 (477)
-.+|-+=+|.|+ .|.. +-.|.+||-+.-+++..||+.+.
T Consensus 710 aKeAsDMVL~DD---nFst--------IvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 710 AKEASDMVLADD---NFST--------IVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred hHhhhhcEEecC---cHHH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555668888 4432 22344567777789999999876
No 338
>PRK08760 replicative DNA helicase; Provisional
Probab=37.52 E-value=3e+02 Score=28.45 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|...+. .|+.|.|++.....+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 466677899999999999998875 49999999988766555
No 339
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=37.17 E-value=74 Score=31.89 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCCCcc----------hHHHHHHhCCceEEE
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTYFVW----------PSKLAKKFGLYYISF 147 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~~~~----------~~~~A~~~gIP~v~~ 147 (477)
...+.++++++ +||++|+.+.+.. +..+.+++|||.+.-
T Consensus 65 ~~~i~~mv~k~-----~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 65 VARVLEMLKDK-----EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHhc-----CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34445555555 9999999987653 122557899998875
No 340
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=37.07 E-value=73 Score=31.89 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhHhcCCCccEEEecCCCcc----------hHHHHHHhCCceEEE
Q 011789 103 FSAHAEEVIGQIVRSGENVHCLIADTYFVW----------PSKLAKKFGLYYISF 147 (477)
Q Consensus 103 ~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~----------~~~~A~~~gIP~v~~ 147 (477)
....+.++++++ +||++|+.+.+.. +..+.+++|||.+.-
T Consensus 64 a~~~i~~mv~k~-----~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 64 AKAKVLEMIKGA-----NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHhc-----CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 334445555555 9999999987653 122457899998875
No 341
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=36.93 E-value=88 Score=27.43 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHhHhcCCCccEEEecCC--CcchHHHHHHhCCceEEE
Q 011789 109 EVIGQIVRSGENVHCLIADTY--FVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 109 ~ll~~~~~~~~~pD~iI~D~~--~~~~~~~A~~~gIP~v~~ 147 (477)
.+.+.+... ++|.|++=.. ...+..+|.++|+|++..
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 444444443 7999996442 337899999999999997
No 342
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=76 Score=31.77 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
-|++---|+-|---=+++++..|+++| .|.|++...-...+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 355556678888888999999999999 99999998887776
No 343
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.51 E-value=69 Score=20.81 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAAKQV 442 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l 442 (477)
+.++|.+||..+.++. .++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4688999999998762 2788777764
No 344
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=36.51 E-value=3.3e+02 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=28.1
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 11 AIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 11 il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|.|+.. |+-|=.--.+.||.+|+++|++|.++=.+.
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 444433 677888888999999999999999985444
No 345
>PRK09739 hypothetical protein; Provisional
Probab=36.29 E-value=85 Score=27.91 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCc--cCHHH-HHHHHHHHHhCCCeEEEEe
Q 011789 7 QKPHAIFISYPLQ--GHVNP-SVQLALKLASQGFTITFVN 43 (477)
Q Consensus 7 ~~~~il~~~~~~~--GH~~p-~l~La~~L~~rGh~Vt~~~ 43 (477)
+||||+++..... |.-.- .-.+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4788877755332 22222 3344667777899998764
No 346
>PRK09620 hypothetical protein; Provisional
Probab=36.28 E-value=51 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 011789 26 VQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 26 l~La~~L~~rGh~Vt~~~~~~ 46 (477)
..||++|.++|++|+++..+.
T Consensus 33 s~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCCC
Confidence 678999999999999997653
No 347
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=36.16 E-value=53 Score=31.74 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=32.8
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 9 PHAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 9 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
|||+|+.-| -.-+.+-..+|.++-++|||+|.++.+....-.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~ 45 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVV 45 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEE
Confidence 588888764 224556788999999999999999998876543
No 348
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=36.07 E-value=56 Score=30.72 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+.|.|+--|+-|=..-.+.||-+|+++|++|.++=...
T Consensus 1 ~~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dp 39 (273)
T PRK13232 1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP 39 (273)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 566777766788999999999999999999999984333
No 349
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.05 E-value=46 Score=34.20 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCCcc
Q 011789 7 QKPHAIFISYPLQGHVNPS------------VQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
+.+||++...|++=.+.|. .+||+++..+|++||+++.+..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 4578888888888777774 6899999999999999997753
No 350
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.50 E-value=64 Score=30.86 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred ccHHHhhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHH
Q 011789 349 CCQTSVLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVH 424 (477)
Q Consensus 349 ~p~~~lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~ 424 (477)
.+..++-..+++ +|+-||-||+.+++.. ++|++.+-.. .+|-.. ..+.+++.++|.
T Consensus 55 ~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~----~~~~~~~~~~l~ 114 (291)
T PRK02155 55 LTPEEIGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT----DIPLDDMQETLP 114 (291)
T ss_pred cChhHhccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc----cCCHHHHHHHHH
Q ss_pred HHhcCC
Q 011789 425 LLMGEK 430 (477)
Q Consensus 425 ~~l~~~ 430 (477)
++++++
T Consensus 115 ~~~~g~ 120 (291)
T PRK02155 115 PMLAGN 120 (291)
T ss_pred HHHcCC
No 351
>PRK13604 luxD acyl transferase; Provisional
Probab=35.35 E-value=74 Score=30.64 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
.+...+++++|..++-.-+..+|+.|.++|+.|..+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345678888888888777999999999999988765
No 352
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.23 E-value=73 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 4 NKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 4 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
+....|+|++. |+.|.+- ..|++.|.++||+|+.+..
T Consensus 17 ~~~~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 33567898876 6666654 4678999999999999874
No 353
>PRK05380 pyrG CTP synthetase; Validated
Probab=35.17 E-value=61 Score=33.66 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred CcEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 8 KPHAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 8 ~~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
|+|.+|++.| +.|-=.-...|+..|++||+.|+..=.+++-..
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNv 46 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINV 46 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccc
Confidence 5899999987 567778899999999999999999877666544
No 354
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=35.16 E-value=1.2e+02 Score=27.38 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=24.1
Q ss_pred CCccEEEecC-CCc-chHHHHHHhCCceEEEecchh
Q 011789 119 ENVHCLIADT-YFV-WPSKLAKKFGLYYISFWTESA 152 (477)
Q Consensus 119 ~~pD~iI~D~-~~~-~~~~~A~~~gIP~v~~~~~~~ 152 (477)
..||+||+-. ..- .+..=|..+|||.|.+.-+..
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 3699988544 332 778889999999999965543
No 355
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.11 E-value=53 Score=31.34 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=38.4
Q ss_pred hhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE 429 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~ 429 (477)
+...+++ +|+-||=||+..++.. ++|++.+-.. .+|-.. ..+.+++.+++++++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt----~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT----DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC----cCCHHHHHHHHHHHHcC
Confidence 3345676 9999999999988663 6777665321 123222 56778888888888765
Q ss_pred C
Q 011789 430 K 430 (477)
Q Consensus 430 ~ 430 (477)
+
T Consensus 121 ~ 121 (287)
T PRK14077 121 E 121 (287)
T ss_pred C
Confidence 4
No 356
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.09 E-value=57 Score=33.52 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.+||++...|+.+ .+-...|+++|.++|++|.++.++...+.+
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 5788887776555 457899999999999999999999888777
No 357
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.33 E-value=59 Score=28.41 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred cCHHH-HHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 20 GHVNP-SVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 20 GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
||... .+.+.+.|++ +||+|.++.++...+.+
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi 43 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVV 43 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHH
Confidence 78766 8899999985 59999999999988766
No 358
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=34.20 E-value=2.2e+02 Score=28.92 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=22.0
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|.+.. ...+|+++|||++.+
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 8999999964 578999999999876
No 359
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=34.14 E-value=1.1e+02 Score=28.59 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=61.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCC--CCCCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSD--GLPLG 85 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 85 (477)
.+|.|.-.|+-|-=.-.-+|++.|.++||+|-++..++-.... .+ -+.+.++...+.. +.-..
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA--------------lLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA--------------LLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-----------------SS--GGGCHHHHTSTTEEEE
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc--------------ccccHHHhcCcCCCCCEEEe
Confidence 5778888889999888999999999999999998877665543 22 2222333332221 10000
Q ss_pred -CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEE
Q 011789 86 -FDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISF 147 (477)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~ 147 (477)
....+.+...-... ...-.+++.. ++|+||.+..-. .-..+++...+=++.+
T Consensus 96 S~atRG~lGGls~~t-----~~~v~ll~aa-----G~D~IiiETVGvGQsE~~I~~~aD~~v~v~ 150 (266)
T PF03308_consen 96 SMATRGSLGGLSRAT-----RDAVRLLDAA-----GFDVIIIETVGVGQSEVDIADMADTVVLVL 150 (266)
T ss_dssp EE---SSHHHHHHHH-----HHHHHHHHHT-----T-SEEEEEEESSSTHHHHHHTTSSEEEEEE
T ss_pred ecCcCCCCCCccHhH-----HHHHHHHHHc-----CCCEEEEeCCCCCccHHHHHHhcCeEEEEe
Confidence 01112222222222 2233444544 999999998665 3455666666555555
No 360
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=34.06 E-value=85 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=25.6
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCeEEE
Q 011789 284 VLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIW 316 (477)
Q Consensus 284 ~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 316 (477)
.+|+++||-.......++..+.++.+.+.--++
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~ 35 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVV 35 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 699999998776677788888888887753333
No 361
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=34.00 E-value=63 Score=27.72 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=24.9
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEE
Q 011789 8 KPHAIFISYP--LQGHVNPSVQLALKLASQGFTITF 41 (477)
Q Consensus 8 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~ 41 (477)
|++|.++... ..-+..-...|+++|+++||.|..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 6788888776 334445577888999999996665
No 362
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=33.97 E-value=3.1e+02 Score=25.81 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGFDRS 89 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (477)
=|++...|+.|=..-...|.+.|.+.|.+|.++...... +... . | ...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~-----------------~--y-----------~~~ 50 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN-----------------D--Y-----------ADS 50 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS-----------------S--S-------------G
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh-----------------h--h-----------hch
Confidence 467777899999999999999999999999998854444 2110 0 0 000
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc------chHHHHHHhCCceEEEecchhHHH
Q 011789 90 LNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV------WPSKLAKKFGLYYISFWTESALVF 155 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~------~~~~~A~~~gIP~v~~~~~~~~~~ 155 (477)
.. - ...+..+...++.... +-++||+|...+ ....+|+..+.+++.++.......
T Consensus 51 ~~----E----k~~R~~l~s~v~r~ls---~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~ 111 (270)
T PF08433_consen 51 KK----E----KEARGSLKSAVERALS---KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLET 111 (270)
T ss_dssp GG----H----HHHHHHHHHHHHHHHT---T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHH
T ss_pred hh----h----HHHHHHHHHHHHHhhc---cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence 10 1 1112223333333222 348999998765 246699999999988866544433
No 363
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.74 E-value=77 Score=30.32 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+.|..|.|..-|+-|=..-.+.||..|+++|++|.++=...
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 34555667666899999999999999999999999984433
No 364
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.67 E-value=65 Score=28.06 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=21.5
Q ss_pred CccEEEecCCCcc--hHHHHHHhCCceEEEe
Q 011789 120 NVHCLIADTYFVW--PSKLAKKFGLYYISFW 148 (477)
Q Consensus 120 ~pD~iI~D~~~~~--~~~~A~~~gIP~v~~~ 148 (477)
+||+||+...... ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654432 4455688999998873
No 365
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.62 E-value=59 Score=28.36 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEEecchh
Q 011789 104 SAHAEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISFWTESA 152 (477)
Q Consensus 104 ~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~ 152 (477)
...+...+.++..+ +.|+||.+.. +..+|+++|+|++.+.++..
T Consensus 111 ~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 55677777887775 8999999963 57899999999999876443
No 366
>PLN00198 anthocyanidin reductase; Provisional
Probab=33.50 E-value=69 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=27.3
Q ss_pred CCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 1 MAGNKTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 1 ~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
||+.++-+++-++++.++ |.+- ..|+++|.++||+|+.++..
T Consensus 1 ~~~~~~~~~~~vlItG~~-GfIG--~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 1 MATLTPTGKKTACVIGGT-GFLA--SLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCcccCCCCCeEEEECCc-hHHH--HHHHHHHHHCCCEEEEEECC
Confidence 677775554444555443 4443 34789999999999866544
No 367
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.42 E-value=2.7e+02 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|... ....+|+++|||++.+
T Consensus 356 ~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 899999984 3468899999999865
No 368
>PLN02735 carbamoyl-phosphate synthase
Probab=33.41 E-value=2.8e+02 Score=32.09 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCC--ccCH----HHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 7 QKPHAIFISYPL--QGHV----NPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 7 ~~~~il~~~~~~--~GH~----~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
.++||+++-.|. .|+. +.-..++++|.+.|++|..+.+...
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~ 68 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPA 68 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcc
Confidence 457899998875 3544 4578899999999999999876653
No 369
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=33.36 E-value=4.1e+02 Score=30.07 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=60.9
Q ss_pred eeccHHH---hhccCCCCcccc---ccCCchh-hHHHhcCc---ceeccccccchhhHHHHHHhhhc-ceeeecCCCCcC
Q 011789 347 TWCCQTS---VLAHPAIGGFLT---HCGWNSV-LEGLWCGV---PLLCFPLYTDQFTNRKLAVDDWN-VGLNLSNEKVIT 415 (477)
Q Consensus 347 ~~~p~~~---lL~~~~~~~~It---HgG~gs~-~eal~~Gv---P~v~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~ 415 (477)
..+|+.+ ++..+++ ++- .-|+|.+ .|+++++. -+++++ +=-.-|. .+ | -|+.+ ...+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~---~L-~~~AllV---NP~D 513 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQ---SL-GAGAILV---NPWN 513 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHH---Hh-CCceEEE---CCCC
Confidence 3466665 6677777 443 4588855 59999955 122222 2222222 22 3 35666 3678
Q ss_pred HHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 011789 416 KEEVSKNVHLLMG-EKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 416 ~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 471 (477)
.++++++|.++|+ ++ ++-+++.+++.+.+. .-+...-++.|++.|.+..
T Consensus 514 ~~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 514 ITEVAASIAQALNMPE--EEREKRHRHNFMHVT-----THTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHHH
Confidence 9999999999987 33 033333344444443 2355556777777776543
No 370
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=33.26 E-value=58 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
+||.|+-.|..| .++|+.|.++||+|+++.-..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhh
Confidence 578888888777 47899999999999998755443
No 371
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=33.20 E-value=2.6e+02 Score=28.12 Aligned_cols=37 Identities=19% Similarity=0.032 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
|||+++-.|..+| .|++++++-|+.++++..+.+...
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~ 37 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNAGT 37 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCHHH
Confidence 6899998888755 578888888888888766665443
No 372
>PRK09165 replicative DNA helicase; Provisional
Probab=33.06 E-value=3e+02 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQ---------------GFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|...+.+ |..|.|++.....+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667778999999999998888753 7899999988877666
No 373
>PLN02929 NADH kinase
Probab=32.56 E-value=41 Score=32.22 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=44.4
Q ss_pred cCCCCccccccCCchhhHHHh---cCcceecccccc------chhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHh
Q 011789 357 HPAIGGFLTHCGWNSVLEGLW---CGVPLLCFPLYT------DQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 357 ~~~~~~~ItHgG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l 427 (477)
.+++ +|+-||=||+..|.. .++|++.+=... .++.|.-. +.. -+|-.. ..+.+++.++|.+++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~----~~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC----AATAEDFEQVLDDVL 135 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc----cCCHHHHHHHHHHHH
Confidence 4465 999999999999855 468888775532 12333322 112 255544 567899999999999
Q ss_pred cCC
Q 011789 428 GEK 430 (477)
Q Consensus 428 ~~~ 430 (477)
++.
T Consensus 136 ~g~ 138 (301)
T PLN02929 136 FGR 138 (301)
T ss_pred cCC
Confidence 765
No 374
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=32.34 E-value=37 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 011789 24 PSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 24 p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
-.-.|+++|+++||+|+++++..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35678999999999999998766
No 375
>PRK08840 replicative DNA helicase; Provisional
Probab=32.21 E-value=2.7e+02 Score=28.64 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
+++..-|+.|=..-.+.+|...+. .|+.|.|++.....+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 456667899999999999999874 59999999988776665
No 376
>PRK05114 hypothetical protein; Provisional
Probab=32.14 E-value=1.3e+02 Score=20.81 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh
Q 011789 434 KYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQ 472 (477)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~ 472 (477)
.=.++++++.+.|.. |=|+-.++....+.++++-+
T Consensus 12 eQQ~AVErIq~LMaq----GmSsgEAI~~VA~eiRe~~~ 46 (59)
T PRK05114 12 QQQKAVERIQELMAQ----GMSSGEAIALVAEELRANHQ 46 (59)
T ss_pred HHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHh
Confidence 456677777777775 77888888888888876553
No 377
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.14 E-value=49 Score=30.27 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 21 HVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 21 H~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|...|-..|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999887
No 378
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.99 E-value=1.7e+02 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCccccccCCc------hhhHHHhcCcceeccc
Q 011789 360 IGGFLTHCGWN------SVLEGLWCGVPLLCFP 386 (477)
Q Consensus 360 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 386 (477)
.+++++|.|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488888854 7889999999999996
No 379
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.89 E-value=66 Score=28.15 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
....++|+..++.|=..=..++++++..+|+.|.|++.+...+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 346789999888888888999999999999999999988887777
No 380
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.89 E-value=26 Score=31.68 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 18 LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 18 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+..|+...+.++..++.||=.+.|+++.......
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ 123 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDL 123 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHH
Confidence 4578888899999999999999999887765544
No 381
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.88 E-value=1.5e+02 Score=19.88 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 011789 434 KYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRI 471 (477)
Q Consensus 434 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 471 (477)
.=.++++++.+.|.. |=|+-.++....+.+++.-
T Consensus 12 eQQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 12 EQQQAVERIQELMAQ----GMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHH
Confidence 455677777777775 7777778888877777654
No 382
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.77 E-value=2.5e+02 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.8
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC
Q 011789 12 IFISYPLQGHVNPSVQLALKLASQ 35 (477)
Q Consensus 12 l~~~~~~~GH~~p~l~La~~L~~r 35 (477)
.++-.|+.||..=|++|.+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 455678999999999999999876
No 383
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=31.54 E-value=61 Score=27.92 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
.++|+++-+|++||.. |.-|++.|++|++...+..
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCC
Confidence 4799999999999964 7789999999999876665
No 384
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=31.52 E-value=1e+02 Score=27.93 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=27.9
Q ss_pred CcEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYP----LQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4688777651 12245556667788999999999999755
No 385
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.51 E-value=2e+02 Score=20.81 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhhhccC
Q 011789 415 TKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQSKCDK 477 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 477 (477)
+.+++++.|.+-.+ ++++++..+.+.+.+. ....++++.+.+.+++.++.||
T Consensus 23 sG~e~R~~l~~~~~-----~~~~~~~~~~~~~~~~------~k~~~~~~~~~~~e~~~e~~d~ 74 (74)
T PF12732_consen 23 SGKETREKLKDKAE-----DLKDKAKDLYEEAKEK------VKEKAEETADEAKEKAKELKDK 74 (74)
T ss_pred CcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhC
Confidence 44555555554443 4555555555555541 2344555556666666665543
No 386
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.37 E-value=92 Score=24.89 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
++..+.++..|-....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 57788889999999999999999999999999765544444
No 387
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.37 E-value=2.4e+02 Score=22.82 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=31.4
Q ss_pred cccchhhccCCCCcEEEEEecccccC-CHHHHHHHHHHHHhCCCeEEEE
Q 011789 270 SDCSQWLDKQPKGSVLYVSFGSYAHV-SKRDLIEIANGIAKSKVTFIWI 317 (477)
Q Consensus 270 ~~l~~~l~~~~~~~~I~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~ 317 (477)
.+..+|+..+ -+++|.|-.... ++..+..+++.+.+.+.-.+..
T Consensus 34 ~d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 34 PDPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred CCHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 4555677664 477887876554 6677888999999988876554
No 388
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.32 E-value=3.9e+02 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLA-SQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 50 (477)
+..|+|+..++.|=.--...||..|. ++|+.|.++....++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 34567777789999999999999997 57999999999877654
No 389
>PRK05636 replicative DNA helicase; Provisional
Probab=31.21 E-value=1.7e+02 Score=30.51 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLA-SQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~ 51 (477)
|++...|+.|=..-.+.+|...+ +.|..|.|++.....+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 46667788999999999998876 458999999887766555
No 390
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=31.16 E-value=2.2e+02 Score=23.06 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhh
Q 011789 415 TKEEVSKNVHLLMGEKSG-AKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKTRIQS 473 (477)
Q Consensus 415 ~~~~l~~~i~~~l~~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 473 (477)
...++...|..++.+. | ..|.+.++-|...=...+..+. -...++|++.|++.+.+
T Consensus 23 A~~qM~~vI~~Lv~~s-~~~~y~kalecl~~lR~~~i~~~e--p~~yN~Fl~~LK~~~~~ 79 (120)
T PF08785_consen 23 AIQQMKNVIEQLVSDS-GDQNYDKALECLRALREECIEEEE--PDEYNDFLRKLKKKLLS 79 (120)
T ss_dssp HHHHHHHHHHHHHHCS-HCHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHh
Confidence 4577888999999887 5 4555555554444333333333 36788999999987754
No 391
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.14 E-value=44 Score=29.13 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=21.9
Q ss_pred ccCCCCccccccCCchhhHHHhcCcceeccccc
Q 011789 356 AHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 356 ~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 388 (477)
.+..+.++|++||...+..... ++|+|-+|..
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 4455556999999998888877 9999999975
No 392
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.07 E-value=51 Score=30.25 Aligned_cols=98 Identities=5% Similarity=0.093 Sum_probs=51.8
Q ss_pred CCcEEEEEecccc---cCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCC-CeEEEe--eccHH-H
Q 011789 281 KGSVLYVSFGSYA---HVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVAD-RSMIIT--WCCQT-S 353 (477)
Q Consensus 281 ~~~~I~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~-nv~v~~--~~p~~-~ 353 (477)
+++.|.+..|+.. ..+.+.+.++++.+.+.++.+++..+.... ....-+...+.... .+.+.+ -+.+. .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ----EKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH----HHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH----HHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 4567888888753 456778899999998888666555443310 00000011111122 233333 34443 4
Q ss_pred hhccCCCCccccccCCchhhHHHhcCcceecc
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCF 385 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 385 (477)
++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 8888886 6664 467889999999999987
No 393
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=30.95 E-value=1.1e+02 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
||++...++.|=......|++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5788888999999999999999999999999888766
No 394
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.83 E-value=2.6e+02 Score=30.79 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISY--PLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
..|++.++. |+.|----.+.||..|+..|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345555544 5889999999999999999999999865543
No 395
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=30.74 E-value=5.7e+02 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=27.3
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEe
Q 011789 10 HAIFISYP-LQGHVNPSVQLALKLASQGFTITFVN 43 (477)
Q Consensus 10 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~ 43 (477)
.|++.+.. ..|=..-.+.|++.|.++|++|.++=
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 45555444 56888889999999999999999864
No 396
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=30.70 E-value=97 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccCHHHHHHH-HHHHHhCCCeEEEEeCCcchhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQL-ALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~L-a~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
||||+++-....|+.--+... ++.|.+.||+|++...+.....
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~ 44 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDD 44 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchh
Confidence 899999999999999887665 6667778999977777666553
No 397
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.69 E-value=79 Score=28.33 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
..+.||+|=..|+-|-.+.|+.=|++|+++|.+|.+.....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 45689999999999999999999999999999999865443
No 398
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=30.61 E-value=3.1e+02 Score=23.91 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=43.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc-----hhhhccCCCCCCccccccccCCCCCeEEEecCCCCCC
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI-----HQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPL 84 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (477)
.|.+++..+.|=....+.+|-+-+-+|.+|.++=.-.. +..+-...+ ++.+.....++..
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~---------------~~~~~~~g~~f~~ 69 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLP---------------NVEIERFGKGFVW 69 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT-----------------EEEE--TT---
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCC---------------eEEEEEcCCcccc
Confidence 46778888888877666666666666777777632221 111111111 4667666554322
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCC
Q 011789 85 GFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYF 130 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~ 130 (477)
..... ..+ .......+....+.+.. ..+|+||.|-..
T Consensus 70 ~~~~~--~~~-----~~~~~~~~~~a~~~i~~--~~~dlvILDEi~ 106 (172)
T PF02572_consen 70 RMNEE--EED-----RAAAREGLEEAKEAISS--GEYDLVILDEIN 106 (172)
T ss_dssp -GGGH--HHH-----HHHHHHHHHHHHHHTT---TT-SEEEEETHH
T ss_pred cCCCc--HHH-----HHHHHHHHHHHHHHHhC--CCCCEEEEcchH
Confidence 11111 111 23334445455454444 389999999744
No 399
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=30.57 E-value=3.4e+02 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEec
Q 011789 106 HAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 106 ~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~ 149 (477)
.+.++++.+.++ +..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 208 ~l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKKS--DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 345555666664 899999998766 456799999999987644
No 400
>PLN00016 RNA-binding protein; Provisional
Probab=30.42 E-value=60 Score=32.20 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 7 QKPHAIFIS--YPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 7 ~~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.+++|+++. .|+.|.+- ..|++.|.++||+|+.++...
T Consensus 51 ~~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 346777661 24555554 457789999999999988654
No 401
>PRK06703 flavodoxin; Provisional
Probab=30.42 E-value=88 Score=26.29 Aligned_cols=38 Identities=5% Similarity=0.146 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSV-QLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~ 45 (477)
||+++++=...+|+..-+. .|++.|.+.|++|.+.-..
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 6777777777889988765 4578888889999886543
No 402
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.38 E-value=1.2e+02 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+..|+|.+. ++.|=..-...||..|+++|++|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 444444433 577888889999999999999999875443
No 403
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.06 E-value=63 Score=30.85 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+.++|+++-+|++||.+ |.-|.+.|.+|.+..-+.....-
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~ 56 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWK 56 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHH
Confidence 44699999999999987 56789999999998766655433
No 404
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.04 E-value=94 Score=25.24 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
++++.+|..+.-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35677777777888999999999999999888443
No 405
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.04 E-value=78 Score=30.50 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=41.5
Q ss_pred hhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE 429 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~ 429 (477)
+...+++ +|+=||=||++.+... ++|++.+... .+|-.. ....+++.++|++++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~----~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA----EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec----cCCHHHHHHHHHHHHcC
Confidence 3345666 9999999999998764 7788776641 244444 56788888899888876
Q ss_pred C
Q 011789 430 K 430 (477)
Q Consensus 430 ~ 430 (477)
.
T Consensus 129 ~ 129 (306)
T PRK03372 129 D 129 (306)
T ss_pred C
Confidence 5
No 406
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=29.96 E-value=56 Score=33.51 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|||+++--|-- -++-|.+|+++||+||++-....
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEeccCc
Confidence 57777765533 47789999999999999876554
No 407
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.82 E-value=1.4e+02 Score=27.74 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhhh--ccCCCCCCccccccccCCCCCeEEEecCCCCCCC--CCCCCcHHHHHHHHHHH
Q 011789 27 QLALKLASQGFTITFVNTHFIHQQM--TKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLG--FDRSLNHEQFMSSLLHV 102 (477)
Q Consensus 27 ~La~~L~~rGh~Vt~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 102 (477)
.+++.+.+.|-+|.+.+...+-..+ ..... .+-+..+|...... .+..-....++..--..
T Consensus 119 ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~---------------~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPf 183 (257)
T COG2099 119 EAAEAAKQLGRRVFLTTGRQNLAHFVAADAHS---------------HVLARVLPPPDVLAKCEDLGVPPARIIAMRGPF 183 (257)
T ss_pred HHHHHHhccCCcEEEecCccchHHHhcCcccc---------------eEEEEEcCchHHHHHHHhcCCChhhEEEecCCc
Q ss_pred hHHHHHHHHHHhHhcCCCccEEEecCCCcch------HHHHHHhCCceEEE
Q 011789 103 FSAHAEEVIGQIVRSGENVHCLIADTYFVWP------SKLAKKFGLYYISF 147 (477)
Q Consensus 103 ~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~~------~~~A~~~gIP~v~~ 147 (477)
..+.-..+++++ +.|+||+- -+-.. ..+|+.+|||+|.+
T Consensus 184 s~~~n~all~q~-----~id~vItK-~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 SEEDNKALLEQY-----RIDVVVTK-NSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ChHHHHHHHHHh-----CCCEEEEc-cCCcccCcHHHHHHHHHcCCcEEEE
No 408
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=29.81 E-value=1.8e+02 Score=24.82 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred ccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeeccHHHhhccCCCCccccccCCc
Q 011789 291 SYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWCCQTSVLAHPAIGGFLTHCGWN 370 (477)
Q Consensus 291 s~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~p~~~lL~~~~~~~~ItHgG~g 370 (477)
..+...++.+.++++..+..+..+++...+... .||. ++...-...+..-|-- .-+-+|+.
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa------~Lpg-----------vva~~t~~PVIgvP~~--~~~l~G~d 93 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAA------HLPG-----------MVAALTPLPVIGVPVP--SKALSGLD 93 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccc------hhHH-----------HHHhccCCCEEEecCC--ccCCCCHH
Q ss_pred hhhHHHh--cCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 011789 371 SVLEGLW--CGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEKSGAKYRNAAKQVKKAME 447 (477)
Q Consensus 371 s~~eal~--~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~ 447 (477)
++...+. .|+| +--...|...||..+... .+ ....++|.++++..-. ++++...+-.++++
T Consensus 94 aLlS~vqmP~gvp--vatv~I~~~~nAa~~Aaq-----Il----~~~d~~l~~kl~~~r~-----~~~~~v~~~~~~l~ 156 (156)
T TIGR01162 94 SLLSIVQMPSGVP--VATVAIGNAGNAALLAAQ-----IL----GIKDPELAEKLKEYRE-----NQKEEVLKKNKKLE 156 (156)
T ss_pred HHHHHhcCCCCCe--eEEEEcCChhHHHHHHHH-----HH----cCCCHHHHHHHHHHHH-----HHHHHHHhhhhccC
No 409
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=29.67 E-value=71 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|||+|+..+..+ +...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcCC
Confidence 699999766544 677788899999998766543
No 410
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.42 E-value=87 Score=29.96 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=41.0
Q ss_pred HhhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhc
Q 011789 353 SVLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMG 428 (477)
Q Consensus 353 ~lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~ 428 (477)
.+...+++ +|+=||=||++.++.. ++|++.+-.. .+|-.. ..+.+++.++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt----~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA----TVSKEEIEETIDELLN 119 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc----ccCHHHHHHHHHHHHc
Confidence 33345676 9999999999999773 6787765431 233222 5778889999999887
Q ss_pred CC
Q 011789 429 EK 430 (477)
Q Consensus 429 ~~ 430 (477)
+.
T Consensus 120 g~ 121 (292)
T PRK01911 120 GD 121 (292)
T ss_pred CC
Confidence 65
No 411
>CHL00194 ycf39 Ycf39; Provisional
Probab=29.38 E-value=83 Score=30.25 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|||+++ |+.|.+-. .|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 466664 66665544 4788899999999998754
No 412
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.30 E-value=1.5e+02 Score=28.45 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=52.9
Q ss_pred cccchhhccCCCCcEEEEEecccccCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEeec
Q 011789 270 SDCSQWLDKQPKGSVLYVSFGSYAHVSKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIITWC 349 (477)
Q Consensus 270 ~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~~~ 349 (477)
.++.....+.+-+++-+-........+...+..+.++.++.|..+++-++.... ...+.. ....+..
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~----~~~~~~---------~~~~p~~ 182 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG----GAGLEK---------GHSDPLY 182 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC----Cccccc---------CCCCchH
Confidence 566666666444344433333344445555788999999999999997775422 000100 0001111
Q ss_pred cHHHhhccCCCCccccccC--CchhhHH
Q 011789 350 CQTSVLAHPAIGGFLTHCG--WNSVLEG 375 (477)
Q Consensus 350 p~~~lL~~~~~~~~ItHgG--~gs~~ea 375 (477)
=..-+-..++++.++.|+| ..=..|+
T Consensus 183 ~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 183 LDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred HHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 1223556779999999999 5444444
No 413
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.25 E-value=75 Score=32.11 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
+|||.|+-.|-.| +.+|..|+++||+|+.+-..
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 6899988665554 57899999999999988643
No 414
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=29.25 E-value=3.7e+02 Score=24.44 Aligned_cols=51 Identities=6% Similarity=0.069 Sum_probs=31.5
Q ss_pred hhccCCCCccccccC-----CchhhHHHhcCcceeccccccc--hhhHHHHHHhhhcce
Q 011789 354 VLAHPAIGGFLTHCG-----WNSVLEGLWCGVPLLCFPLYTD--QFTNRKLAVDDWNVG 405 (477)
Q Consensus 354 lL~~~~~~~~ItHgG-----~gs~~eal~~GvP~v~~P~~~D--Q~~na~~v~~~~G~G 405 (477)
+++.-+-.++|.-+| +.|...|+..|+|+.++|-..+ +..-+..+-+. |..
T Consensus 151 iia~ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~-GA~ 208 (220)
T TIGR00732 151 IISGLSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQ-GAA 208 (220)
T ss_pred HHHHhcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHC-CCE
Confidence 333333334555544 4677788999999999997544 33334555567 743
No 415
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.24 E-value=4.8e+02 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHhCCceEEEecch
Q 011789 106 HAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 106 ~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~gIP~v~~~~~~ 151 (477)
.+.++.+.+.+. +..+|+++.... .+-.+|+..|+|.+.+.+..
T Consensus 205 ~l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKEK--GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 344555666554 899999997665 56679999999998886554
No 416
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=29.15 E-value=66 Score=25.90 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 22 VNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 22 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+.|.+.+.-.+.-|||+++++-+..+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 567888888888999999999999888776
No 417
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=29.08 E-value=9.1 Score=21.13 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCchhhHHHhcCcceec
Q 011789 368 GWNSVLEGLWCGVPLLC 384 (477)
Q Consensus 368 G~gs~~eal~~GvP~v~ 384 (477)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888999999998765
No 418
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=28.85 E-value=3.4e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
.+..|++.-.++.|=..-...|+..|..+|+.|.++.......
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4456666666789999999999999999999999988775543
No 419
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.82 E-value=93 Score=31.72 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
+|||+++-.|..| ++.++.|.++|++|++.=...+.
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 7999999999999 89999999999999998755544
No 420
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=28.50 E-value=91 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=22.0
Q ss_pred cEEEEEecccccCCHH-HHHHHHHHHHh--CCCeEEEEEcCC
Q 011789 283 SVLYVSFGSYAHVSKR-DLIEIANGIAK--SKVTFIWILRPD 321 (477)
Q Consensus 283 ~~I~vs~Gs~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 321 (477)
.+++|||||....... -+..+.+.++. .+..+.|.+.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4788999987644333 56666666655 577888877543
No 421
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.45 E-value=1e+02 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
..+|+++-.|..| ...++.|.+.||+|+++.+.
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 4678887666544 67899999999999999533
No 422
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=28.41 E-value=77 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=24.8
Q ss_pred CccEEE-ecCCCc-chHHHHHHhCCceEEEecch
Q 011789 120 NVHCLI-ADTYFV-WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 120 ~pD~iI-~D~~~~-~~~~~A~~~gIP~v~~~~~~ 151 (477)
.||+|| +|+..- -+..-|.++|||.|.+.-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 788877 555444 78888999999999996553
No 423
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=28.35 E-value=95 Score=31.29 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=31.1
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|+.|.|+.. ||.|=.--.+.||..|+.+|++|.++=....
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 344455443 7999999999999999999999999854443
No 424
>PLN02327 CTP synthase
Probab=28.11 E-value=85 Score=32.79 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=34.9
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 9 PHAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 9 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
||.+|++.| +.|--.-...|+..|++||++|+..=.+++-..
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNv 45 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNT 45 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeeccccccc
Confidence 488899987 567778889999999999999999877766544
No 425
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=27.79 E-value=3.6e+02 Score=22.55 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 11 AIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|.+.-.++.|=-..+..++..|.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777889999999999999999999999987654
No 426
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.78 E-value=75 Score=29.02 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|+++++-.|-.| ..+|+.|.+.||+|+.+-.....
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCHHH
Confidence 567777666555 67999999999999998765544
No 427
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.75 E-value=2e+02 Score=27.58 Aligned_cols=28 Identities=7% Similarity=0.066 Sum_probs=23.6
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
+.|++|+- ..+...+|..+|+|++.++.
T Consensus 254 ~a~l~I~~--DSgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGV--DTGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeC--CChHHHHHHHcCCCEEEEEC
Confidence 66999976 55689999999999999864
No 428
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.66 E-value=4.5e+02 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=23.2
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+-+.+|+-.+.......+++.|+|++.=
T Consensus 80 GA~FivsP~~~~~v~~~~~~~~i~~iPG 107 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHAQDHGIPIIPG 107 (204)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcEECC
Confidence 8889988887778888899999988763
No 429
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=27.44 E-value=82 Score=31.77 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|||.|+-.|-.| +.+|..|+++||+|+.+-...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECCH
Confidence 588888766666 678999999999999886543
No 430
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.26 E-value=2e+02 Score=22.84 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEe-------eccHHH---hhccCCCCcccc
Q 011789 296 SKRDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIIT-------WCCQTS---VLAHPAIGGFLT 365 (477)
Q Consensus 296 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~-------~~p~~~---lL~~~~~~~~It 365 (477)
..+....++.++++.|.+++.+..... .... .-+..+.....+ |+.... +.....+ ...
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d-------~~s~--~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i 78 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPD-------TVST--HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAI 78 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGG-------TTGH--HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEE
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchh-------cccc--cccccccceecCcchhhhhhccHHHHhhHhhhhcC--ccc
Confidence 344467899999999999998876541 1111 112344555544 555554 3344444 889
Q ss_pred ccCCchhhHHH
Q 011789 366 HCGWNSVLEGL 376 (477)
Q Consensus 366 HgG~gs~~eal 376 (477)
|+|+|-+.|..
T Consensus 79 ~pGyg~lse~~ 89 (110)
T PF00289_consen 79 HPGYGFLSENA 89 (110)
T ss_dssp ESTSSTTTTHH
T ss_pred ccccchhHHHH
Confidence 99999888764
No 431
>PLN02240 UDP-glucose 4-epimerase
Probab=27.21 E-value=1e+02 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 7 QKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 7 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
++++|++. |+.|.+-. .|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~iG~--~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYIGS--HTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChHHH--HHHHHHHHCCCEEEEEeC
Confidence 34566653 56676643 567899999999999863
No 432
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=27.19 E-value=76 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCcc
Q 011789 26 VQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 26 l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
+..|..|+++|++|+++-....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678999999999999875543
No 433
>PRK10818 cell division inhibitor MinD; Provisional
Probab=27.10 E-value=1e+02 Score=28.85 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.8
Q ss_pred CcEEEEEc--CCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFIS--YPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|+|++-+. -|+.|=..-.+.||..|+.+|++|.++=...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45553333 3788999999999999999999999986655
No 434
>PRK07004 replicative DNA helicase; Provisional
Probab=27.06 E-value=4e+02 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 011789 11 AIFISYPLQGHVNPSVQLALKLAS-QGFTITFVNTHFIHQQM 51 (477)
Q Consensus 11 il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~~ 51 (477)
+++...|+.|=..-.+.+|..++. .|+.|.|++-....+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 566677899999999999998874 69999999988877665
No 435
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.03 E-value=4.6e+02 Score=23.46 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCcEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 7 QKPHAIFISYP-LQGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 7 ~~~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
.|.++-|+..+ ..|-..-++.-++....+|-.|.++++.-...
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 35677777777 56888899999999999999999998776543
No 436
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=26.99 E-value=2.2e+02 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
|||+++-.|++-| +||+.|++.+.--.+++.+.+.
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN~ 35 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGNP 35 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCCC
Confidence 7999999999999 4899999887555555555554
No 437
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.97 E-value=1.6e+02 Score=25.25 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCccEEEecCCCc----------chHHHHHHhCCceEEEecch
Q 011789 119 ENVHCLIADTYFV----------WPSKLAKKFGLYYISFWTES 151 (477)
Q Consensus 119 ~~pD~iI~D~~~~----------~~~~~A~~~gIP~v~~~~~~ 151 (477)
.+||+|++...+- -+..+|+++|+|+.-.+...
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 4999999876542 36779999999998875443
No 438
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=26.93 E-value=1.1e+02 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=33.4
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 8 KPHAIFISY-PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 8 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
|+.|.|... ||.|=.--.+.||..|+++|++|.++=.+....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 345555554 788999999999999999999999987766544
No 439
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.91 E-value=1.4e+02 Score=23.39 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITF 41 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~ 41 (477)
|+||+++|..+.+-=.=.-..-+....+|.++++
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I 34 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTI 34 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 6899999998777555555555555667776665
No 440
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=26.90 E-value=1.4e+02 Score=24.80 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=31.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 12 IFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 12 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+++.++..--++|..-++...+++|++|+++.+--....+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l 46 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMAL 46 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHh
Confidence 4556678888999999999999999999998774444433
No 441
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=26.89 E-value=3.1e+02 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE-EeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITF-VNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~-~~~~~ 46 (477)
|||+|+..+..| +...+.|.+.||+|.. +|.+.
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~t~pd 34 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVFTHTD 34 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEEeCCC
Confidence 689998655443 4455888889999984 55443
No 442
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.88 E-value=5.1e+02 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 7 QKPHAIFISYPLQ--GH----VNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 7 ~~~~il~~~~~~~--GH----~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
.++||+++-.|.. |. =+-.+.++++|++.||+|.++.....
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npe 600 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPE 600 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCcc
Confidence 5789988877642 32 23678889999999999998876653
No 443
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=26.85 E-value=4.8e+02 Score=30.09 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCc--cCH----HHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 7 QKPHAIFISYPLQ--GHV----NPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 7 ~~~~il~~~~~~~--GH~----~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
...||+++-.|.. |.- +..+.++++|++.||+|.++....
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~np 598 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNP 598 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 4568999887753 432 456889999999999999887654
No 444
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.83 E-value=1.1e+02 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=30.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.|.+.--||-|-.--.+.||..|+++|++|.++=..+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4456556899999999999999999999999984443
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=26.80 E-value=2.4e+02 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=34.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.-+++.-.++.|=..-.+.++..-+++|+.|.|++.....+.+
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERI 59 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 3455666678888888888888877889999999988877666
No 446
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.75 E-value=74 Score=30.07 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHhhccCCCCccccccCCchhhHHHh----cCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHh
Q 011789 352 TSVLAHPAIGGFLTHCGWNSVLEGLW----CGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLM 427 (477)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l 427 (477)
.++...+++ +|+=||=||+..+.+ .++|++.+-.. .+|-.. ..+.+++.+.+.+++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~----~~~~~~~~~~l~~~~ 96 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT----DIDPKNAYEQLEACL 96 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc----cCCHHHHHHHHHHHH
Confidence 444445676 999999999998855 36787765421 234333 467788888888887
Q ss_pred cC
Q 011789 428 GE 429 (477)
Q Consensus 428 ~~ 429 (477)
++
T Consensus 97 ~~ 98 (272)
T PRK02231 97 ER 98 (272)
T ss_pred hc
Confidence 73
No 447
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.55 E-value=4.2e+02 Score=22.85 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=48.3
Q ss_pred CCcEEEEcchhhccHHHHHHHHccCC-EEEeCccCCCCCCccccccccCCccccchhhccCCCCcEEEEEecccccCCHH
Q 011789 220 NADYVLCNTVHELESEAVTALKAKIP-FITMGPISLNKFSDRVVATSLWSESDCSQWLDKQPKGSVLYVSFGSYAHVSKR 298 (477)
Q Consensus 220 ~~~~~l~~s~~~l~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~ 298 (477)
....+++-+.++.-.......+...| +..+|.....-..... +++.+.+.+..+ .+|+|++|+=-+ +.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~--------~~i~~~I~~~~p-div~vglG~PkQ--E~ 114 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEE--------EEIIERINASGA-DILFVGLGAPKQ--EL 114 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhH--------HHHHHHHHHcCC-CEEEEECCCCHH--HH
Confidence 34566777766655555555667778 6666643322211111 456677777543 499999987542 22
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCC
Q 011789 299 DLIEIANGIAKSKVTFIWILRPD 321 (477)
Q Consensus 299 ~~~~~~~al~~~~~~~i~~~~~~ 321 (477)
+..... ...+..++..+++.
T Consensus 115 ~~~~~~---~~l~~~v~~~vG~~ 134 (171)
T cd06533 115 WIARHK---DRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHH---HHCCCCEEEEecee
Confidence 222222 22455666666543
No 448
>PRK05246 glutathione synthetase; Provisional
Probab=26.50 E-value=93 Score=30.07 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=32.7
Q ss_pred CcEEEEEcCCC---ccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 8 KPHAIFISYPL---QGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 8 ~~~il~~~~~~---~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
+|||+|+.-|- .-......+|+++-++|||+|.++++....-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~ 45 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSL 45 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEE
Confidence 47898888652 2344667889999999999999999877653
No 449
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.48 E-value=5e+02 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=19.3
Q ss_pred CccEEEecCCCc----chHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFV----WPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~----~~~~~A~~~gIP~v~~ 147 (477)
++|.||...... .....+.+.|||+|.+
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 889988765322 2345557789999987
No 450
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=26.30 E-value=79 Score=30.23 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNT 44 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 44 (477)
|++|.|+-.|..| ..+|+.|.++||+|+++..
T Consensus 1 m~~Ig~IGlG~mG-----~~mA~~l~~~G~~V~v~d~ 32 (296)
T PRK15461 1 MAAIAFIGLGQMG-----SPMASNLLKQGHQLQVFDV 32 (296)
T ss_pred CCeEEEEeeCHHH-----HHHHHHHHHCCCeEEEEcC
Confidence 4689888777666 6789999999999988754
No 451
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.14 E-value=96 Score=29.89 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=40.3
Q ss_pred hhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcC
Q 011789 354 VLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGE 429 (477)
Q Consensus 354 lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~ 429 (477)
+...+++ +|+=||=||++.+.+. ++|++.+-. - .+|-.. ..+.+++.++|.+++++
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lGFLt----~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLGFLT----EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCcccc----cCCHHHHHHHHHHHHcC
Confidence 3334566 9999999999999774 778877642 1 233222 56778888999988876
Q ss_pred C
Q 011789 430 K 430 (477)
Q Consensus 430 ~ 430 (477)
+
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 5
No 452
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.02 E-value=84 Score=30.44 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=27.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
|||.++-.|+.|- .+|..|++.||+|+++....
T Consensus 1 MkI~IiGaGa~G~-----ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGT-----AIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEecCH
Confidence 5888888888874 67889999999999888643
No 453
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.01 E-value=80 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.306 Sum_probs=22.4
Q ss_pred CccCH--HHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 18 LQGHV--NPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 18 ~~GH~--~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
...++ .|.+.|+++|.++|.+|.+.=+-......
T Consensus 10 n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 10 NTDDIRESPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp TSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CCcccccCHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 34444 79999999999999998887665555444
No 454
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.95 E-value=1.3e+02 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITF 41 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~ 41 (477)
|+||+++|.+|.|=-.-.-.+-+.+.++|.++.+
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i 34 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEV 34 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEE
Confidence 5689999998774444444555555667877655
No 455
>PRK11823 DNA repair protein RadA; Provisional
Probab=25.88 E-value=4e+02 Score=27.23 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
-+++.-.++.|=-.-++.++..++++|++|.|++.....+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 456677789999999999999999899999999987765554
No 456
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=25.84 E-value=1.1e+02 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=33.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
..|+|+-..+-|=.--..+||..++.+|..|.+++...++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 4577888889999999999999999999999999998875
No 457
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=25.80 E-value=4.1e+02 Score=30.09 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=21.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEec
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFWT 149 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~ 149 (477)
+||++|.... ...+|+++|||++-...
T Consensus 389 ~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 389 MPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred CCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 9999998642 46789999999997653
No 458
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.70 E-value=97 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 24 PSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 24 p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
--+.+|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 357899999999999999876554
No 459
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.69 E-value=1.4e+02 Score=26.19 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
||||++--.|+.|-++ -++|.+.|.+.|+++.++.+......+
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a~~~~ 44 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAAKKTL 44 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHHHHHH
Confidence 5788888888888666 478999999999999999999877766
No 460
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=25.69 E-value=83 Score=28.47 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=23.7
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 9 PHAIFIS-YPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 9 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
|||.|+- .|..| ..|++.|+++||+|+++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEcC
Confidence 5788874 45444 36889999999999987543
No 461
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.62 E-value=91 Score=30.41 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=37.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
..++|+..+|.|=..=..++|++|..+|+.|.|++.+.+...+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5678888788888888889999999999999999988877665
No 462
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=25.59 E-value=4.7e+02 Score=23.06 Aligned_cols=114 Identities=9% Similarity=0.054 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh-ccCCCCCCccccccccCCCCCeEEEecCC----------------C
Q 011789 20 GHVNPSVQLALKLASQ-GFTITFVNTHFIHQQM-TKASPEMGSDIFAGVRKSGLDIRYMTLSD----------------G 81 (477)
Q Consensus 20 GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~----------------~ 81 (477)
-.+.-+-.+++.+.++ |.++.+-.+....+-+ .+ ++-+..+.. +
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA------------------DfVi~~irvGg~~~r~~De~Ip~k~G 100 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALEGA------------------DFVINQIRVGGLEAREIDEEIPLKYG 100 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE------------------SEEEE---TTHHHHHHHHHHTGGCCT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC------------------CEEEEEeeecchHHHHHHHHHHHHhC
Confidence 3455667788888764 8888887777776666 33 344444431 1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCcc---hHHHHHHhC-CceEEEecchhHHH
Q 011789 82 LPLGFDRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFVW---PSKLAKKFG-LYYISFWTESALVF 155 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~~---~~~~A~~~g-IP~v~~~~~~~~~~ 155 (477)
.......+.....++..++. -+.+.++.+++++- .||+-|..+..+. +..+.+..+ ++.+.++.++....
T Consensus 101 i~~~~~eT~G~GG~~~alRt--ipv~~~ia~~i~~~--~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~ 174 (183)
T PF02056_consen 101 IVGTIQETVGPGGFFRALRT--IPVMLDIARDIEEL--CPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTR 174 (183)
T ss_dssp TT-BTTSSSTHHHHHHHHHH--HHHHHHHHHHHHHH--TTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHH
T ss_pred CccccccccCccHHHHHHhh--HHHHHHHHHHHHHh--CCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHH
Confidence 11111344455566666633 45566666666664 8999998865553 344556777 99999988765543
No 463
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.52 E-value=99 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred ccccccCC----chhhHHH-hcCcceecccc
Q 011789 362 GFLTHCGW----NSVLEGL-WCGVPLLCFPL 387 (477)
Q Consensus 362 ~~ItHgG~----gs~~eal-~~GvP~v~~P~ 387 (477)
+++.+.|. |.+.+|. .+++|+|++=-
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g 92 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILAS 92 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 46677774 4677888 99999988763
No 464
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.50 E-value=1.6e+02 Score=25.36 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=20.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 17 PLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 17 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
.+-|++ .+|++.|+++|.+|..++.+.
T Consensus 113 SgD~DF---~~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 113 TRDADF---LPVINKAKENGKETIVIGAEP 139 (160)
T ss_pred eccHhH---HHHHHHHHHCCCEEEEEeCCC
Confidence 355665 457788999999999999664
No 465
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=25.48 E-value=5e+02 Score=23.36 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhccCCCCCCccccccccCCCCCeEEEecCCCCCCCC
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQ-GFTITFVNTHFIHQQMTKASPEMGSDIFAGVRKSGLDIRYMTLSDGLPLGF 86 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (477)
+.||.|+-.|-.|--.-+--|-.+-++| +.+|.++++....+-
T Consensus 2 vvkig~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~P------------------------------------ 45 (277)
T COG1927 2 VVKIGFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDP------------------------------------ 45 (277)
T ss_pred eeEEEEEEecccchHHHHHHHHHhhcccCCceEEEeccccccCh------------------------------------
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHhcCCCccEEEecCCCc--chHHHHHHh----CCceEEEecch
Q 011789 87 DRSLNHEQFMSSLLHVFSAHAEEVIGQIVRSGENVHCLIADTYFV--WPSKLAKKF----GLYYISFWTES 151 (477)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~pD~iI~D~~~~--~~~~~A~~~----gIP~v~~~~~~ 151 (477)
........+.++++ +||+||.-.-.. .+...|+.. ++|++++.-.+
T Consensus 46 --------------e~veaav~~~~e~~-----~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 46 --------------ECVEAAVTEMLEEF-----NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred --------------HHHHHHHHHHHHhc-----CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
No 466
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=25.39 E-value=96 Score=27.98 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 6 TQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 6 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
...+||++.-.|+- -.+-...|.+.|. +||+|.++.++...+++
T Consensus 17 ~~~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI 60 (209)
T PLN02496 17 PRKPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASLHFI 60 (209)
T ss_pred CCCCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHhhhc
Confidence 45567777766644 4566678999998 59999999999998888
No 467
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.38 E-value=77 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccC--HHHHHHHHHHHHh
Q 011789 8 KPHAIFISYPLQGH--VNPSVQLALKLAS 34 (477)
Q Consensus 8 ~~~il~~~~~~~GH--~~p~l~La~~L~~ 34 (477)
||||++.-++-+|. +||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 78998888875554 8999999999964
No 468
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=25.25 E-value=1.5e+02 Score=27.19 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011789 5 KTQKPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTH 45 (477)
Q Consensus 5 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 45 (477)
...+|+|+++-. .|.+ -..|++.|.++||+|+.++-.
T Consensus 14 ~~~~~~ilItGa--sG~i--G~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 14 NVKTKTVFVAGA--TGRT--GKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cccCCeEEEECC--CcHH--HHHHHHHHHhCCCEEEEEecC
Confidence 346778877653 2322 256788899999999887644
No 469
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.11 E-value=75 Score=27.45 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=20.6
Q ss_pred ccccccCC------chhhHHHhcCcceeccccc
Q 011789 362 GFLTHCGW------NSVLEGLWCGVPLLCFPLY 388 (477)
Q Consensus 362 ~~ItHgG~------gs~~eal~~GvP~v~~P~~ 388 (477)
++++|.|- +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 48888874 5788899999999998753
No 470
>PRK08322 acetolactate synthase; Reviewed
Probab=25.06 E-value=1.4e+02 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCccccccCCc------hhhHHHhcCcceeccc
Q 011789 359 AIGGFLTHCGWN------SVLEGLWCGVPLLCFP 386 (477)
Q Consensus 359 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P 386 (477)
..+++++|.|-| .+++|...++|+|++-
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 344588888744 8899999999999985
No 471
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=24.98 E-value=1.2e+02 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=20.0
Q ss_pred CccEEEecCCCc--chHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFV--WPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~--~~~~~A~~~gIP~v~~ 147 (477)
+||+|+..+..- .|..+++++|||.+.+
T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~lgv~~~~i 430 (550)
T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKLGVTQCFI 430 (550)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCcEEEeccCcchHHHHHHHhhcCCceehh
Confidence 899999775433 6778999999999887
No 472
>PRK00170 azoreductase; Reviewed
Probab=24.98 E-value=1.4e+02 Score=26.37 Aligned_cols=37 Identities=5% Similarity=-0.027 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCc---cCHHHHH-HHHHHHHhC--CCeEEEEeC
Q 011789 8 KPHAIFISYPLQ---GHVNPSV-QLALKLASQ--GFTITFVNT 44 (477)
Q Consensus 8 ~~~il~~~~~~~---GH~~p~l-~La~~L~~r--Gh~Vt~~~~ 44 (477)
||||+++...-+ |-..-++ .+.+.|.++ ||+|+++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 678766655433 3333333 345666677 899988643
No 473
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=24.98 E-value=84 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHF 46 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 46 (477)
+|+|.|+-.|..| ..+|..|+++||+|+++....
T Consensus 2 ~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred CcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCCH
Confidence 5689888877655 467889999999999986553
No 474
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=24.92 E-value=1.7e+02 Score=30.19 Aligned_cols=43 Identities=5% Similarity=-0.103 Sum_probs=37.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
.-+++.-.++.|=-.-.+.++.+.+++|..|.|++.....+.+
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQL 306 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHH
Confidence 4567777889999999999999999999999999988877666
No 475
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=24.54 E-value=1.2e+02 Score=30.09 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 10 HAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 10 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
-+++.--|+.|=-.=++.++..++..|..|.|++.....+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 345666678898999999999999999999999876554444
No 476
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.53 E-value=1.2e+02 Score=31.76 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=21.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEe
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFW 148 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~ 148 (477)
+||+||.+. ....+|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 899999986 45667999999998874
No 477
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=24.38 E-value=1.1e+02 Score=32.47 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCCCCchhHHHhcCCCeEEEe-----eccHH---HhhccCCCCccccccCC
Q 011789 298 RDLIEIANGIAKSKVTFIWILRPDIVSSDDPNPLPEDFKKEVADRSMIIT-----WCCQT---SVLAHPAIGGFLTHCGW 369 (477)
Q Consensus 298 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~nv~v~~-----~~p~~---~lL~~~~~~~~ItHgG~ 369 (477)
...+.+++.|+..|.+.++-+.+... .++-+.+.+ .++++.+. -.-+. .-..+...+++++|.|-
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~-----~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~Gp 86 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAI-----LPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGP 86 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCccc-----HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 34677888999999998888776522 112122211 12343322 11111 11111233348888775
Q ss_pred c------hhhHHHhcCcceeccc
Q 011789 370 N------SVLEGLWCGVPLLCFP 386 (477)
Q Consensus 370 g------s~~eal~~GvP~v~~P 386 (477)
| .+++|...++|+|++-
T Consensus 87 G~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 87 GATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 7899999999999985
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.30 E-value=1.7e+02 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
+..|+|+..++-|=.--...||..|++.|++|.++..+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4456677777999999999999999999999999998875
No 479
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.29 E-value=97 Score=31.41 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=21.8
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+||++|.... ...+|+++|||++.+
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeC
Confidence 9999998864 667899999999876
No 480
>PRK09701 D-allose transporter subunit; Provisional
Probab=24.27 E-value=6.2e+02 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=19.3
Q ss_pred CccEEEecCCCc----chHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTYFV----WPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~~~----~~~~~A~~~gIP~v~~ 147 (477)
++|.||...... .....+.+.|||+|.+
T Consensus 82 ~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 82 NYKGIAFAPLSSVNLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCcEEEe
Confidence 899888765332 1234467889999998
No 481
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.21 E-value=5.4e+02 Score=25.59 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=21.9
Q ss_pred HHHHHHHhHhcCCCccEEEecCCCcchHHHHHHhCCceEEE
Q 011789 107 AEEVIGQIVRSGENVHCLIADTYFVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 107 ~~~ll~~~~~~~~~pD~iI~D~~~~~~~~~A~~~gIP~v~~ 147 (477)
+.++++.. +||+++.+.. ...+|+++++|++.+
T Consensus 333 ~~~~l~~~-----~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 333 IEELLEEL-----KPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHH-----T-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred HHHHHHhc-----CCCEEEechh---hHHHHHHhCCCeEEE
Confidence 34445555 9999999953 678899999999886
No 482
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.14 E-value=1e+02 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 011789 16 YPLQGHVNPSVQLALKLASQGFTITFVNTHFIH 48 (477)
Q Consensus 16 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 48 (477)
.|+.|++-- .|++.|.++||+|+.++-....
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~ 34 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPSK 34 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGGG
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCchh
Confidence 456666653 5899999999999999976553
No 483
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=24.03 E-value=1e+02 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCccccccCCc------hhhHHHhcCcceecccc
Q 011789 360 IGGFLTHCGWN------SVLEGLWCGVPLLCFPL 387 (477)
Q Consensus 360 ~~~~ItHgG~g------s~~eal~~GvP~v~~P~ 387 (477)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33477777744 77889999999999963
No 484
>PLN02293 adenine phosphoribosyltransferase
Probab=24.02 E-value=2.6e+02 Score=24.65 Aligned_cols=28 Identities=7% Similarity=0.161 Sum_probs=21.6
Q ss_pred CccEEEecC-CCc-chHHHHHHhCCceEEE
Q 011789 120 NVHCLIADT-YFV-WPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~-~~~-~~~~~A~~~gIP~v~~ 147 (477)
++|+|++-. ..+ .+..+|..+|+|++..
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 789988543 223 7888999999998876
No 485
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.96 E-value=1.2e+02 Score=26.68 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 47 (477)
|||.++ +.||+- +.+|..|+++||+|+.+-....
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCChH
Confidence 677777 455553 7788999999999998866554
No 486
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=23.92 E-value=2.6e+02 Score=21.82 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=30.1
Q ss_pred cEEEEEcC--CCccC-HHHHHHHHHHHHhCC---CeEEEEeCCcchhhh
Q 011789 9 PHAIFISY--PLQGH-VNPSVQLALKLASQG---FTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~--~~~GH-~~p~l~La~~L~~rG---h~Vt~~~~~~~~~~~ 51 (477)
|+|+++.. |.... ..-.+.++..+...| |+|+++........+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~ 49 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLA 49 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHH
Confidence 46666555 33333 677888899999999 999999888776665
No 487
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.89 E-value=1.2e+02 Score=31.67 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.9
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEe
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFW 148 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~ 148 (477)
+||+||.+. ....+|+++|||++.++
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999875 46778999999998873
No 488
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.88 E-value=97 Score=29.36 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCCCccccccCCchhhHHH---hcCcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHHHhcCC
Q 011789 357 HPAIGGFLTHCGWNSVLEGL---WCGVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHLLMGEK 430 (477)
Q Consensus 357 ~~~~~~~ItHgG~gs~~eal---~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~~l~~~ 430 (477)
.+++ +|.-||-||+.+++ ..++|++.+|.. .+|-.- .++.+++.+++.+++++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G--------------~lGFl~----~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMG--------------TLGFLT----EVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCC--------------CCCccc----cCCHHHHHHHHHHHHcCC
No 489
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=23.80 E-value=2.6e+02 Score=26.21 Aligned_cols=57 Identities=7% Similarity=0.081 Sum_probs=39.8
Q ss_pred CcCHHHHHHHHHHHhc--CCch-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 011789 413 VITKEEVSKNVHLLMG--EKSG-AKYRNAAKQVKKAMEYALQPNGSSDKNMDQFIKDLKT 469 (477)
Q Consensus 413 ~~~~~~l~~~i~~~l~--~~~~-~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 469 (477)
..+-+.+.+++.++|+ |.++ +..+.+-+++-++++......||++..+.-|.+.+..
T Consensus 81 ~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~ 140 (302)
T PTZ00119 81 YDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILN 140 (302)
T ss_pred ccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4566778888888864 5433 3455666777788887777789999887777665553
No 490
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.76 E-value=4.4e+02 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 17 PLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 17 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
|+.|.+- ..+++.|.+.||+|+.++.+...+..
T Consensus 5 GatG~~G--~~v~~~L~~~~~~V~~l~R~~~~~~~ 37 (233)
T PF05368_consen 5 GATGNQG--RSVVRALLSAGFSVRALVRDPSSDRA 37 (233)
T ss_dssp TTTSHHH--HHHHHHHHHTTGCEEEEESSSHHHHH
T ss_pred CCccHHH--HHHHHHHHhCCCCcEEEEeccchhhh
Confidence 4555544 57889999999999999998865444
No 491
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=23.69 E-value=1.3e+02 Score=28.34 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=36.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 011789 9 PHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQQM 51 (477)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 51 (477)
+||+|+--|+-|-=--...|+.+|+..|++|..+...+..+..
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccc
Confidence 4899999999999999999999999999999999887776554
No 492
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=23.69 E-value=1.4e+02 Score=27.78 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=31.7
Q ss_pred EEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 011789 10 HAIFISYP---LQGHVNPSVQLALKLASQGFTITFVNTHFIHQQ 50 (477)
Q Consensus 10 ~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 50 (477)
|.+|++.| +.|--.-...|+..|.+||++|+..=.+++-..
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNv 44 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNV 44 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccC
Confidence 35666665 556777888999999999999999876666544
No 493
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.64 E-value=2e+02 Score=25.49 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=22.5
Q ss_pred CccEEEecCC--CcchHHHHHHhCCceEEE
Q 011789 120 NVHCLIADTY--FVWPSKLAKKFGLYYISF 147 (477)
Q Consensus 120 ~pD~iI~D~~--~~~~~~~A~~~gIP~v~~ 147 (477)
++|+|++-.. .+.+..+|..+|+|++..
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 8999985432 237888999999999998
No 494
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=23.64 E-value=1.2e+02 Score=31.76 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=22.3
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEe
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFW 148 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~ 148 (477)
+||+||.+. ....+|+++|||++.++
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 899999986 46778999999998873
No 495
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=23.62 E-value=2.3e+02 Score=28.23 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHhhccCCCCccccccCCchhhHHHhcCcceeccccccchhhHHHHHHhhhccee-eecCCCCcCHHHHHHHHHHHhcC
Q 011789 352 TSVLAHPAIGGFLTHCGWNSVLEGLWCGVPLLCFPLYTDQFTNRKLAVDDWNVGL-NLSNEKVITKEEVSKNVHLLMGE 429 (477)
Q Consensus 352 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~-~~~~~~~~~~~~l~~~i~~~l~~ 429 (477)
..+++++++ +| -.=+=++.-|++.|+|.+++-+. +-+....++. |+-- .++ .+.++.+.+...+.+.+++
T Consensus 280 ~~~l~~~dl--~V-g~R~HsaI~al~~g~p~i~i~Y~---~K~~~l~~~~-gl~~~~~~-i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 280 GGILAACDL--IV-GMRLHSAIMALAFGVPAIAIAYD---PKVRGLMQDL-GLPGFAID-IDPLDAEILSAVVLERLTK 350 (385)
T ss_pred HHHhccCce--EE-eehhHHHHHHHhcCCCeEEEeec---HHHHHHHHHc-CCCccccc-CCCCchHHHHHHHHHHHhc
Confidence 347777774 33 33455788899999999997653 4444555566 6642 231 0288999999998888765
No 496
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=1.1e+02 Score=29.39 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 011789 8 KPHAIFISYPLQGHVNPSVQLALKLASQGFTITFVNTHFIHQ 49 (477)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 49 (477)
||||+|+..+.. ....-++|.++||+|.-+.+.....
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCCc
Confidence 799999988864 4666788888999998877666553
No 497
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.53 E-value=5.3e+02 Score=22.98 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=24.5
Q ss_pred CccEEEecCCCcchHHHHHHhCCceEEEecchh
Q 011789 120 NVHCLIADTYFVWPSKLAKKFGLYYISFWTESA 152 (477)
Q Consensus 120 ~pD~iI~D~~~~~~~~~A~~~gIP~v~~~~~~~ 152 (477)
+.+.+|+-.+.......+++.|+|++.=..++.
T Consensus 80 GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tpt 112 (196)
T PF01081_consen 80 GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPT 112 (196)
T ss_dssp T-SEEEESS--HHHHHHHHHHTSEEEEEESSHH
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcccCCcCCHH
Confidence 889999998888889999999999987544433
No 498
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=23.51 E-value=1.3e+02 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.6
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEE
Q 011789 8 KPHAIFISYP--LQGHVNPSVQLALKLASQGFTITFV 42 (477)
Q Consensus 8 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~ 42 (477)
||+.+|++.- .-|=..-.-.|++.|+++|++|.++
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 6777777764 5688899999999999999999985
No 499
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.37 E-value=1.4e+02 Score=28.57 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred cHHHhhccCCCCccccccCCchhhHHHhc----CcceeccccccchhhHHHHHHhhhcceeeecCCCCcCHHHHHHHHHH
Q 011789 350 CQTSVLAHPAIGGFLTHCGWNSVLEGLWC----GVPLLCFPLYTDQFTNRKLAVDDWNVGLNLSNEKVITKEEVSKNVHL 425 (477)
Q Consensus 350 p~~~lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~l~~~i~~ 425 (477)
+..++...+++ +|+=||=||++.+.+. ++|++.+-.. .+|-.. .++.+++.+++.+
T Consensus 61 ~~~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~----~~~~~~~~~~l~~ 120 (296)
T PRK04539 61 NKTELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT----QIPREYMTDKLLP 120 (296)
T ss_pred chhhcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee----ccCHHHHHHHHHH
Q ss_pred HhcCC
Q 011789 426 LMGEK 430 (477)
Q Consensus 426 ~l~~~ 430 (477)
++++.
T Consensus 121 i~~g~ 125 (296)
T PRK04539 121 VLEGK 125 (296)
T ss_pred HHcCC
No 500
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=1.4e+02 Score=31.34 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.6
Q ss_pred CcEEEEEcCC-------CccCHHHHHH---HHHHHHhCCCeEEEEeCCcc
Q 011789 8 KPHAIFISYP-------LQGHVNPSVQ---LALKLASQGFTITFVNTHFI 47 (477)
Q Consensus 8 ~~~il~~~~~-------~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~~ 47 (477)
|+++++.+.. =.||++++++ +|+-+..+||+|.|+|...-
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4566665432 2499997764 68888889999999986553
Done!