Query 011790
Match_columns 477
No_of_seqs 242 out of 1914
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfd_A Acyl-COA dehydrogenase; 100.0 6.8E-67 2.3E-71 533.4 30.6 378 43-476 10-390 (393)
2 1ukw_A Acyl-COA dehydrogenase; 100.0 3.8E-66 1.3E-70 525.5 33.1 372 48-476 1-375 (379)
3 2d29_A Acyl-COA dehydrogenase; 100.0 5.3E-66 1.8E-70 525.9 32.8 373 48-476 3-382 (387)
4 3p4t_A Putative acyl-COA dehyd 100.0 5.3E-66 1.8E-70 528.4 32.0 378 43-476 17-398 (403)
5 2jif_A Short/branched chain sp 100.0 5.5E-66 1.9E-70 528.1 32.0 373 47-476 24-399 (404)
6 2vig_A Short-chain specific ac 100.0 1.6E-65 5.3E-70 523.0 33.4 372 48-475 2-376 (391)
7 1w07_A Acyl-COA oxidase; oxido 100.0 7.4E-66 2.5E-70 555.3 32.6 412 39-476 12-437 (659)
8 2ddh_A Acyl-COA oxidase; beta 100.0 6.6E-65 2.2E-69 547.1 39.2 413 39-476 10-434 (661)
9 3r7k_A Probable acyl COA dehyd 100.0 1.1E-65 3.7E-70 526.2 31.2 374 46-476 23-400 (403)
10 1buc_A Butyryl-COA dehydrogena 100.0 1.4E-65 4.9E-70 522.1 31.7 373 48-476 1-380 (383)
11 2pg0_A Acyl-COA dehydrogenase; 100.0 4.1E-65 1.4E-69 518.9 33.2 371 48-476 5-382 (385)
12 1egd_A Medium chain acyl-COA d 100.0 1.4E-65 4.9E-70 524.2 29.4 372 47-475 11-388 (396)
13 3nf4_A Acyl-COA dehydrogenase; 100.0 3.3E-65 1.1E-69 520.1 30.5 369 49-476 13-384 (387)
14 3ii9_A Glutaryl-COA dehydrogen 100.0 5E-66 1.7E-70 527.5 23.6 375 44-476 11-388 (396)
15 2dvl_A Acyl-COA dehydrogenase; 100.0 6.9E-65 2.4E-69 515.0 30.7 364 52-476 3-369 (372)
16 1ivh_A Isovaleryl-COA dehydrog 100.0 9E-65 3.1E-69 517.9 31.1 369 51-475 12-387 (394)
17 3sf6_A Glutaryl-COA dehydrogen 100.0 1.2E-64 4.2E-69 518.3 30.5 373 41-476 19-395 (403)
18 1rx0_A Acyl-COA dehydrogenase 100.0 2.6E-64 8.9E-69 514.2 32.2 370 50-476 17-389 (393)
19 2eba_A Putative glutaryl-COA d 100.0 1.1E-64 3.9E-69 515.7 28.2 368 47-475 6-377 (385)
20 2ix5_A Acyl-coenzyme A oxidase 100.0 1.9E-64 6.4E-69 520.9 27.6 371 44-475 47-420 (436)
21 3owa_A Acyl-COA dehydrogenase; 100.0 8.6E-64 2.9E-68 532.6 33.4 371 51-475 32-420 (597)
22 3swo_A Glutaryl-COA dehydrogen 100.0 2.4E-64 8.1E-69 515.6 27.3 371 43-476 17-390 (399)
23 2z1q_A Acyl-COA dehydrogenase; 100.0 3.3E-63 1.1E-67 528.1 34.6 368 52-476 28-411 (577)
24 3mpi_A Glutaryl-COA dehydrogen 100.0 3.9E-64 1.3E-68 513.9 26.4 371 48-475 1-380 (397)
25 4hr3_A Putative acyl-COA dehyd 100.0 2.9E-63 9.9E-68 510.3 32.9 377 45-475 2-406 (415)
26 1siq_A GCD, glutaryl-COA dehyd 100.0 1.1E-62 3.6E-67 502.4 28.4 369 47-475 9-380 (392)
27 1r2j_A Protein FKBI; polyketid 100.0 6.2E-63 2.1E-67 499.5 26.3 353 62-475 3-359 (366)
28 2uxw_A VERY-long-chain specifi 100.0 6.8E-62 2.3E-66 519.4 31.5 362 58-474 56-425 (607)
29 2wbi_A Acyl-COA dehydrogenase 100.0 1.2E-61 4.2E-66 499.8 32.1 380 43-475 14-414 (428)
30 3mkh_A Nitroalkane oxidase; ox 100.0 1.7E-61 5.9E-66 500.5 31.6 380 48-475 3-412 (438)
31 2c12_A Nitroalkane oxidase; ox 100.0 2.4E-60 8.2E-65 491.9 33.7 375 48-475 2-415 (439)
32 3mxl_A Nitrososynthase; flavin 100.0 9.7E-58 3.3E-62 466.3 20.1 369 48-476 5-390 (395)
33 3m9v_A FAD-dependent oxidoredu 100.0 1.2E-56 4.2E-61 464.3 24.6 372 44-475 12-400 (439)
34 2or0_A Hydroxylase; APC7385, r 100.0 3E-56 1E-60 458.0 25.2 365 50-475 16-397 (414)
35 2rfq_A 3-HSA hydroxylase, oxyg 100.0 4.9E-55 1.7E-59 446.2 28.8 362 57-475 10-382 (394)
36 2jbr_A P-hydroxyphenylacetate 100.0 2.4E-55 8.3E-60 452.2 24.9 358 57-475 38-410 (422)
37 3djl_A Protein AIDB; alpha hel 100.0 2.7E-50 9.3E-55 423.6 33.1 334 99-475 88-437 (541)
38 1u8v_A Gamma-aminobutyrate met 100.0 4.3E-37 1.5E-41 319.6 27.3 273 156-474 120-423 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 2.3E-36 7.8E-41 313.7 29.2 267 161-475 122-420 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 4.1E-31 1.4E-35 274.1 22.7 243 159-445 127-391 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 2.2E-24 7.7E-29 223.9 24.1 249 163-455 134-400 (517)
42 3owa_A Acyl-COA dehydrogenase; 92.1 0.98 3.4E-05 47.5 12.0 123 339-475 464-587 (597)
43 2uxw_A VERY-long-chain specifi 81.8 13 0.00044 39.0 12.8 67 370-440 510-576 (607)
44 2z1q_A Acyl-COA dehydrogenase; 43.5 2.7E+02 0.0094 28.5 13.4 93 370-475 472-565 (577)
No 1
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=6.8e-67 Score=533.44 Aligned_cols=378 Identities=18% Similarity=0.232 Sum_probs=338.7
Q ss_pred CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch
Q 011790 43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE 122 (477)
Q Consensus 43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg 122 (477)
.++..|++.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus 10 ~~p~~m~~~~~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG 75 (393)
T 3pfd_A 10 GNPSFELFQLPEEHIALREAIRALAEK-------------EIAPYA-AEVDEKARFPEEALAALNSSGFSAIHVPEEYGG 75 (393)
T ss_dssp ------------CHHHHHHHHHHHHHH-------------HTGGGH-HHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTC
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHHH-------------hCchHH-HHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCC
Confidence 466779999999999999999999988 355544 357777889999999999999999999999987
Q ss_pred ---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEE
Q 011790 123 ---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199 (477)
Q Consensus 123 ---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A 199 (477)
++.+.+.++|++++.|+++++.+..|. ++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|
T Consensus 76 ~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A 154 (393)
T 3pfd_A 76 QGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRA 154 (393)
T ss_dssp CCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEE
T ss_pred CCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEE
Confidence 889999999999999999998777774 6667789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcc
Q 011790 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGV 279 (477)
Q Consensus 200 ~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~ 279 (477)
++++ |||+|| |+|.||||+.. |||++|+|+++++.+..++++|+||.+ .|||++.++|+++|++++
T Consensus 155 ~~~~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~ 220 (393)
T 3pfd_A 155 VADG--DDWILN-----GSKCWITNGGK-STWYTVMAVTDPDKGANGISAFMVHKD------DEGFTVGPKERKLGIKGS 220 (393)
T ss_dssp EEET--TEEEEE-----EEEEEEETTTT-CSEEEEEEESCGGGGGGGEEEEEEETT------STTEEEEEECCBSSCTTS
T ss_pred EEcC--CEEEEe-----eEEEEecCCcc-cCEEEEEEEeCCCCCCCceEEEEEECC------CCCeEecCCCCcccCCCC
Confidence 9996 899999 99999999997 999999999976655678999999976 699999999999999999
Q ss_pred cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011790 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359 (477)
Q Consensus 280 ~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf 359 (477)
++++|.||||+||++++|+. ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 221 ~~~~v~fddv~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~f 284 (393)
T 3pfd_A 221 PTTELYFENCRIPGDRIIGE----------------PGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQF 284 (393)
T ss_dssp CEEEEEEEEEEEEGGGEESS----------------TTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred CceEEEEccEEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Confidence 99999999999999999996 67899999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011790 360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACG 439 (477)
Q Consensus 360 g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G 439 (477)
|+| |+++|.+|++|++|.+.+++++++++++++.++.. ..+....++++|+++++.+.++++.|+|+||
T Consensus 285 g~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~----~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~G 353 (393)
T 3pfd_A 285 GRP-------VSDNQGVQFMLADMAMKIEAARLMVYSAAARAERG----EGDLGFISAASKCFASDVAMEVTTDAVQLFG 353 (393)
T ss_dssp TEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred Ccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998 99999999999999999999999999999999873 2225667899999999999999999999999
Q ss_pred cccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 440 GQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 440 g~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 354 g~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 390 (393)
T 3pfd_A 354 GYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRA 390 (393)
T ss_dssp GGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874
No 2
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.8e-66 Score=525.49 Aligned_cols=372 Identities=20% Similarity=0.259 Sum_probs=342.7
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.+++|+.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~ 66 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEV-------------ILPVA-QEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKM 66 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHT-------------TGGGH-HHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-------------CchhH-HHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCH
Confidence 44557788899999999999873 44543 456777789999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011790 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++++.|+++++.+.+| .++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|++++
T Consensus 67 ~~~~~~~eel~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~- 144 (379)
T 1ukw_A 67 LDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQG- 144 (379)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEET-
T ss_pred HHHHHHHHHHHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeC-
Confidence 999999999999999999888888 477888999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011790 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|||+|| |+|+||||+.. |||++|+|+++++++.+|+++|+||.+ .|||++.+.|+++|++++++++|
T Consensus 145 -~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~~Gv~v~~~~~~~G~~~~~~~~v 211 (379)
T 1ukw_A 145 -DHYVLN-----GTKMWISNGGE-AEWVVVFATVNPELRHKGVVALVVERG------TPGFKAIKIHGKMGQRASGTYEL 211 (379)
T ss_dssp -TEEEEE-----EEEEEEETTTT-EEEEEEEEESCGGGGGGGEEEEEEETT------CTTEEEEECCCCSSCTTSCEEEE
T ss_pred -CEEEEE-----EEEecccCCCc-CCEEEEEEEcCCCCCCCceEEEEEeCC------CCCeEecCccccccCCCCCeeEE
Confidence 899999 99999999997 999999999865444568999999975 69999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011790 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 212 ~fd~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~-- 273 (379)
T 1ukw_A 212 VFEDVKVPVENRLGE----------------EGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEP-- 273 (379)
T ss_dssp EEEEEEEEGGGEESC----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSB--
T ss_pred EEeeEEecHHhcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcc--
Confidence 999999999999996 67889988889999999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011790 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||.||+
T Consensus 274 -----i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~ 343 (379)
T 1ukw_A 274 -----IANFQAIQFKLVDMLIGIETARMYTYYAAWLADQG-----LPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYV 343 (379)
T ss_dssp -----GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecC
Confidence 99999999999999999999999999999999862 24456889999999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+++++|+|||+++..+++|++++++..|++.
T Consensus 344 ~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 375 (379)
T 1ukw_A 344 REFPVEKLLRDVKLNQIYEGTNEIQRLIIARH 375 (379)
T ss_dssp TTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHhcCceecCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999863
No 3
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=5.3e-66 Score=525.87 Aligned_cols=373 Identities=19% Similarity=0.237 Sum_probs=343.2
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++
T Consensus 3 m~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~ 68 (387)
T 2d29_A 3 LWFEEGAEERQVLGPFREFLKA-------------EVAPGA-AERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68 (387)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHH-------------HTGGGH-HHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-------------hcchhH-HHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCH
Confidence 5566788889999999999987 345543 456777789999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011790 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|++++
T Consensus 69 ~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~- 147 (387)
T 2d29_A 69 RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVE- 147 (387)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEET-
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeC-
Confidence 8999999999999999998888875577888999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCC----CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEING----KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~----~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
|||+|| |+|+||||+.. |||++|+|++++++ +.+|+++|+||.+ .|||++.+.|+++|+++++
T Consensus 148 -~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~g~~~~~ 214 (387)
T 2d29_A 148 -GGWRLN-----GTKQFITQGSV-AGVYVVMARTDPPPSPERKHQGISAFAFFRP------ERGLKVGRKEEKLGLTASD 214 (387)
T ss_dssp -TEEEEE-----EEEEEEETTTT-CSEEEEEEECSCCSCGGGTTTTEEEEEEECC------SSSEEECCCCCCSSCTTSC
T ss_pred -CEEEEE-----eEEeccCCCCc-CCEEEEEEEeCCccccCCCCCCeEEEEEeCC------CCCeeccCcccccCCCCCC
Confidence 899999 99999999997 99999999986442 4558999999975 6999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 215 ~~~v~f~~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg 278 (387)
T 2d29_A 215 TAQLILEDLFVPEEALLGE----------------RGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFG 278 (387)
T ss_dssp EEEEEEEEEEEEGGGEESS----------------TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred eeEEEEeeEEECHHHcCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC
Confidence 9999999999999999996 678999888899999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||
T Consensus 279 ~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 346 (387)
T 2d29_A 279 RP-------IAEFEGVSFKLAEAATELEAARLLYLKAAELKDAG-----RPFTLEAAQAKLFASEAAVKACDEAIQILGG 346 (387)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cc-------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 99999999999999999999999999999999852 2345788999999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.||+.+++++|+|||+++..+++|++++++..|++.
T Consensus 347 ~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~ 382 (387)
T 2d29_A 347 YGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARR 382 (387)
T ss_dssp GGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHH
T ss_pred eecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999863
No 4
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=5.3e-66 Score=528.41 Aligned_cols=378 Identities=16% Similarity=0.159 Sum_probs=345.6
Q ss_pred CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch
Q 011790 43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE 122 (477)
Q Consensus 43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg 122 (477)
=++..|++.+++++.++++.+++|+++ ++.|.. .+.|+.+.+|.++|++|.+.||+++.+|+++||
T Consensus 17 ~~~~~M~~~~~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG 82 (403)
T 3p4t_A 17 QGPGSMSIWTTAEREALRKTVRAFAER-------------EVLPHA-HEWERAGEIPRELHRKAAELGLLGAGFPEDAGG 82 (403)
T ss_dssp ------CTTSSHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHH-------------hCchhH-HHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCC
Confidence 356678899999999999999999998 355543 457788889999999999999999999999987
Q ss_pred ---HHHHHHHHHHHHhcccccc-hhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeE
Q 011790 123 ---AELRKLALLEVTGIFDHSL-AIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETV 198 (477)
Q Consensus 123 ---~~~~~~~~~e~la~~~~s~-~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~ 198 (477)
++.+.+.++|++++.|+++ ++.+.+|..++...|..+|+++|+++||+++.+|++++|+++|||++|||+.+++|+
T Consensus 83 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~ 162 (403)
T 3p4t_A 83 SGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTR 162 (403)
T ss_dssp CBCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCE
T ss_pred CCCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEE
Confidence 7889999999999999998 777777766777889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCc
Q 011790 199 TTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278 (477)
Q Consensus 199 A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g 278 (477)
|++++ |||+|| |+|+||||+.. |||++|+|+++++ +.+|+++|+||.+ .|||++.+.|+++|+++
T Consensus 163 A~~~~--~g~~ln-----G~K~~vs~a~~-Ad~~~v~a~~~~~-~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~ 227 (403)
T 3p4t_A 163 ADLDG--DHYVIN-----GAKTYITSGVR-ADYVVTAARTGGP-GAGGVSLIVVDKG------TPGFEVTRKLDKMGWRS 227 (403)
T ss_dssp EEEET--TEEEEE-----EEEEEEETTTT-CSEEEEEEECSSS-SGGGEEEEEEETT------CTTEEEEEECCBSSCTT
T ss_pred EEEeC--CEEEEE-----EEEEEecCCcc-cCEEEEEEEeCCC-CCCceEEEEEeCC------CCCeEecCCCCcccCCC
Confidence 99996 899999 99999999997 9999999998765 4568999999976 69999999999999999
Q ss_pred ccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011790 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRA 358 (477)
Q Consensus 279 ~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~q 358 (477)
+++++|.||||+||++++|+. ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+|
T Consensus 228 ~~~~~v~fddv~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~ 291 (403)
T 3p4t_A 228 SDTAELSYTDVRVPVANLVGS----------------ENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDT 291 (403)
T ss_dssp SCEEEEEEEEEEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred CCeeEEEEcceEecHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999996 6789999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011790 359 FSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREAC 438 (477)
Q Consensus 359 fg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~ 438 (477)
||+| |+++|.+|++|++|.+.+++++++++++++.++... ......++++|+++++.+.++++.|+|+|
T Consensus 292 fg~p-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~ 360 (403)
T 3p4t_A 292 FGRP-------LISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGE----TNLIAEVCFAKNTAVEAGEWVANQAVQLF 360 (403)
T ss_dssp TTEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998 999999999999999999999999999999998631 11267889999999999999999999999
Q ss_pred ccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 439 GGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 439 Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
||.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 361 Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 398 (403)
T 3p4t_A 361 GGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKT 398 (403)
T ss_dssp GGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHH
T ss_pred ChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999873
No 5
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=5.5e-66 Score=528.15 Aligned_cols=373 Identities=19% Similarity=0.280 Sum_probs=341.9
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011790 47 EMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 47 ~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
.|.+.+++|+.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| +
T Consensus 24 ~~~~~~~~e~~~l~~~~r~~~~~-------------~~~p~~-~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~ 89 (404)
T 2jif_A 24 APLQTFTDEEMMIKSSVKKFAQE-------------QIAPLV-STMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGAS 89 (404)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHH-------------HTGGGH-HHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHH-------------hCcccH-HHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCC
Confidence 34455788889999999999998 355643 356777789999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011790 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
+.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|. ++|+++|||++|||+..++|+|++++
T Consensus 90 ~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g 168 (404)
T 2jif_A 90 FLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEG 168 (404)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEET
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeC
Confidence 88999999999999999999888887677888999999999999999999986 78999999999999999999999986
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011790 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
|+|+|| |+|+||||+.. |||++|+|+++++++.+|+++|+||.+ .|||++.+.|+++|++++++++
T Consensus 169 --~g~vln-----G~K~~is~a~~-Ad~~~v~ar~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~~~~~ 234 (404)
T 2jif_A 169 --DYYVLN-----GSKMWISSAEH-AGLFLVMANVDPTIGYKGITSFLVDRD------TPGLHIGKPENKLGLRASSTCP 234 (404)
T ss_dssp --TEEEEE-----EEEEEEETTTT-CSEEEEEEESCGGGGGGGEEEEEEETT------CTTEEECCCCCBSSCTTSCEEE
T ss_pred --CEEEEE-----eEEEeecCCcc-cCEEEEEEEeCCCCCCCceEEEEEecC------CCCeEeccCcccccCCCCceEE
Confidence 899999 99999999997 999999999865544568999999975 6999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011790 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
|.|+||+||++++|+. ++.||...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 235 v~fd~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~- 297 (404)
T 2jif_A 235 LTFENVKVPEANILGQ----------------IGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKR- 297 (404)
T ss_dssp EEEEEEEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE-
T ss_pred EEEccEEECHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCc-
Confidence 9999999999999996 67889988889999999999999999999999999999999999998
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011790 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|.++|.+|++|++|.+++++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.||
T Consensus 298 ------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~ 366 (404)
T 2jif_A 298 ------LFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAG-----KPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGY 366 (404)
T ss_dssp ------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHhcCccee
Confidence 99999999999999999999999999999998753 2345678899999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+.+++++|+|||+++..+++|++++++..|++.
T Consensus 367 ~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 399 (404)
T 2jif_A 367 TKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKH 399 (404)
T ss_dssp BTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHH
T ss_pred cCCCcHHHHHhhccceeecCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999873
No 6
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=1.6e-65 Score=523.05 Aligned_cols=372 Identities=19% Similarity=0.263 Sum_probs=340.7
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~ 67 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEK-------------ELFPIA-AQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDY 67 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-------------hCcccH-HHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCH
Confidence 5667888899999999999987 355543 456777889999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011790 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|++++
T Consensus 68 ~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~- 146 (391)
T 2vig_A 68 LAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEG- 146 (391)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEET-
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeC-
Confidence 8999999999999999998888885467888999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011790 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|||+|| |+|+||||+.. |||++|+|+++++++.+|+++|+||.+ .|||++.+.|+++|++++++++|
T Consensus 147 -~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~g~r~~~~~~v 213 (391)
T 2vig_A 147 -DSWVLN-----GTKAWITNAWE-ASAAVVFASTDRALQNKSISAFLVPMP------TPGLTLGKKEDKLGIRGSSTANL 213 (391)
T ss_dssp -TEEEEE-----EEEEEEETTTT-CSEEEEEEECCSSSTTSCEEEEEEESS------CTTEEECCCCCBSSCTTSCEEEE
T ss_pred -CEEEEe-----eEEEeecCCCc-CCEEEEEEEeCCCCCCCceEEEEEeCC------CCCeEecCccccccCCCCCeeEE
Confidence 899999 99999999997 999999999865434568999999975 69999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011790 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 214 ~fd~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~-- 275 (391)
T 2vig_A 214 IFEDCRIPKDSILGE----------------PGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAP-- 275 (391)
T ss_dssp EEEEEEEEGGGEESS----------------TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE--
T ss_pred EECcEEECHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCc--
Confidence 999999999999996 67899988889999999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011790 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.||+
T Consensus 276 -----i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~ 345 (391)
T 2vig_A 276 -----LTKLQVIQFKLADMALALESARLLTWRAAMLKDNK-----KPFIKEAAMAKLAASEAATAISHQAIQILGGMGYV 345 (391)
T ss_dssp -----GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEec
Confidence 99999999999999999999999999999999753 22456789999999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
.+++++|+|||+++..+++|++++++..|++
T Consensus 346 ~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~ 376 (391)
T 2vig_A 346 TEMPAERHYRDARITEIYEGTSEIQRLVIAG 376 (391)
T ss_dssp TTSSHHHHHHHHHHHTTTTSCHHHHHHHHHH
T ss_pred CCChHHHHHHHhhcceeecCHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 7
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=7.4e-66 Score=555.28 Aligned_cols=412 Identities=32% Similarity=0.521 Sum_probs=353.9
Q ss_pred cCCCCCHHHHhhhcCC--CcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCcccccc
Q 011790 39 EVYDFDLKEMRKLLDG--HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWL 116 (477)
Q Consensus 39 ~~~~~~~~~m~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~ 116 (477)
..++||+++|..++.+ |+.++|+.+++|++++|.|... +.. ...++.+.|+.|.+.|++.. +
T Consensus 12 ~~~~f~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~~~---------~~~------~~~~~~~~~~~l~~~g~l~~-~ 75 (659)
T 1w07_A 12 NKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKS---------NRA------RLSRKELFKSTLRKCAHAFK-R 75 (659)
T ss_dssp TTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCT---------TTT------SSCHHHHHHHHHHHHHHHHH-H
T ss_pred ccCCCCHHHHHHHHCCChHHHHHHHHHHHHHhcCcccccC---------Ccc------CCChHHHHHHHHHHHHHHHH-h
Confidence 5688999999877765 4679999999999998776421 111 12356788999999888874 7
Q ss_pred ccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCe
Q 011790 117 TAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIE 196 (477)
Q Consensus 117 p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~ 196 (477)
|+++|++..+...+.|++ +.+++ +.+|+.+++..|..+|+++|+++|||++.+|++++|+++|||++|||+.+++
T Consensus 76 p~e~G~~~~~~~~v~e~~---~~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~ 150 (659)
T 1w07_A 76 IIELRLNEEEAGRLRHFI---DQPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLE 150 (659)
T ss_dssp HHHTTCCHHHHHHHHHHH---CCCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCC
T ss_pred HHHhCCCchHHHHHHHHh---ccchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccce
Confidence 888887666666666665 44554 6777668889999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEecCCCCceeeeecC-ccccccEEEEEEEeeeCCCcCceEEEEEEeeC-CCCCCCCCeEEccCCCcc
Q 011790 197 TVTTYDANTGEFIINTPCESAQKYWIGG-AANHATHTIVFSQLEINGKNQGVHAFICQIRD-AAGNICPNIRIADCGHKI 274 (477)
Q Consensus 197 t~A~~~~~~~~~ilntp~~~G~K~~is~-a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~-~~~~~~pGv~i~~~~~~~ 274 (477)
|+|++++++|+|+|||||.+|+|+||+| +.. |||++|+|++..+++++|+++|+||+++ .+|.+.|||++.++|+++
T Consensus 151 TtA~~d~~~~g~vLntP~~~G~K~~is~~a~~-Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~ 229 (659)
T 1w07_A 151 TTATLDPKTDEFVIHTPTQTASKWWPGGLGKV-STHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKM 229 (659)
T ss_dssp CEEEEETTTTEEEEECCSGGGSEECCTTTTTT-CSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBS
T ss_pred eEEEEcCCCCEEEEcCCCCCeEEEeecCCCCC-CCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCc
Confidence 9999996568999999999999999999 675 9999999999876666789999999766 678889999999999999
Q ss_pred c---cCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011790 275 G---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIR 351 (477)
Q Consensus 275 G---l~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 351 (477)
| +++++++.|.|+||+||++++|+++++|.++|.+..++..+ ...+..+..+|+.+++.++|+++++++++++
T Consensus 230 G~~~~~g~~~~~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~----~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ 305 (659)
T 1w07_A 230 GNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPK----QLVYGTMVYVRQTIVADASNALSRAVCIATR 305 (659)
T ss_dssp SSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEECSSCG----GGCTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCceEEEeccEEECHHHhcCCcCccCCCCceecCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999988888888876643222 2334567789999999999999999999999
Q ss_pred HHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCCc----hhhHHHHHHHHHHHH
Q 011790 352 YSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNR---TPQSN----KTIHVVSSAFKAILT 424 (477)
Q Consensus 352 ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~---~~~~~----~~~~~~~~~~K~~a~ 424 (477)
|++.|+|||++++.+|.||++||.+|++|+++.+.+++++++++++++.++.. ..... .+.+..++++|++++
T Consensus 306 ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at 385 (659)
T 1w07_A 306 YSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTT 385 (659)
T ss_dssp HHHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccCCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHH
Confidence 99999999987777888999999999999999999999999999999887531 01111 256788999999999
Q ss_pred HHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 425 WHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 425 ~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+.+.++++.|+|+|||+||+.+++++++|||+++..+++|+|+++++++++.
T Consensus 386 ~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~ 437 (659)
T 1w07_A 386 TATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARF 437 (659)
T ss_dssp HHHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999873
No 8
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=6.6e-65 Score=547.07 Aligned_cols=413 Identities=31% Similarity=0.519 Sum_probs=348.8
Q ss_pred cCCCCCHHHHhhhcCC--CcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCcccccc
Q 011790 39 EVYDFDLKEMRKLLDG--HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWL 116 (477)
Q Consensus 39 ~~~~~~~~~m~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~ 116 (477)
..++||+++|+.+|++ +..++|++++++++++|.|... +.+..+.++.++...+..+.|.+. +
T Consensus 10 ~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~---------~~~~~~~~e~~~~~~~~~~~l~~~-~----- 74 (661)
T 2ddh_A 10 ASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHE---------DYNFLTRSQRYEVAVKKSATMVKK-M----- 74 (661)
T ss_dssp HHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCS---------CGGGSCHHHHHHHHHHHHHHHHHH-H-----
T ss_pred hhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccC---------CcCCCCHHHHHHHHHHHHHHHHHH-H-----
Confidence 4578999999999988 4478899999999999887532 222356677777777777777764 2
Q ss_pred ccccch-HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCC
Q 011790 117 TAKGAE-AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGI 195 (477)
Q Consensus 117 p~~~Gg-~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~ 195 (477)
+++|+ ...... +.+++... +++..+++|+.+++..|..+|+++|+++|||++.+|++++||++|||+||||+.++
T Consensus 75 -~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l 150 (661)
T 2ddh_A 75 -REYGISDPEEIM-WFKNSVHR--GHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGL 150 (661)
T ss_dssp -HHTTCCCHHHHH-HHHHHHHT--TCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGC
T ss_pred -HHcCCCCchHHH-HHHHHhcc--chhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccc
Confidence 33443 222222 25555443 33456778877899999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCeEEEecCCCCceeeeecC-ccccccEEEEEEEeeeCCCcCceEEEEEEeeC-CCCCCCCCeEEccCCCc
Q 011790 196 ETVTTYDANTGEFIINTPCESAQKYWIGG-AANHATHTIVFSQLEINGKNQGVHAFICQIRD-AAGNICPNIRIADCGHK 273 (477)
Q Consensus 196 ~t~A~~~~~~~~~ilntp~~~G~K~~is~-a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~-~~~~~~pGv~i~~~~~~ 273 (477)
+|+|++++++|+|+|||||.+|+|+|||| +.. |||++|+|++..+++++|+++|+||+++ .+|.+.|||++.++|++
T Consensus 151 ~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~-Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k 229 (661)
T 2ddh_A 151 ETTATYDPKTQEFILNSPTVTSIKWWPGGLGKT-SNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPK 229 (661)
T ss_dssp CCEEEEETTTTEEEEECCSSTTSEECCTTTTTT-CSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCC
T ss_pred eeEEEEcCCCCeEEEcCCCCCeEEEecCCCccc-CCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccc
Confidence 99999996669999999999999999999 665 9999999999876666789999999876 57888999999999999
Q ss_pred cccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011790 274 IGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYS 353 (477)
Q Consensus 274 ~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya 353 (477)
+|+++++++.|.|+||+||++++|+++++|+++|.|..++ .+...+..+..+|+.+++.++|+++++++++++|+
T Consensus 230 ~Gl~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~-----~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya 304 (661)
T 2ddh_A 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPL-----SNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYS 304 (661)
T ss_dssp SSCTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceEEEeccEEECHHHhcCcccccCCCCceeccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888889887653 13455677788999999999999999999999999
Q ss_pred hhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCCc----hhhHHHHHHHHHHHHHH
Q 011790 354 LSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRT---PQSN----KTIHVVSSAFKAILTWH 426 (477)
Q Consensus 354 ~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~---~~~~----~~~~~~~~~~K~~a~~~ 426 (477)
+.|+|||.+++.+|.||++||.+|++|+++.+.+++++++++++++.+++.. .... .+.+..++++|+++++.
T Consensus 305 ~~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~ 384 (661)
T 2ddh_A 305 AVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWT 384 (661)
T ss_dssp HHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred hhCcccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 9999999877778889999999999999999999999999999999886421 0111 25678899999999999
Q ss_pred HHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 427 NMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 427 a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+.++++.|+|+|||+||..+++++++|||+++..+++|+|+++++++||.
T Consensus 385 a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~ 434 (661)
T 2ddh_A 385 ANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARF 434 (661)
T ss_dssp HHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999873
No 9
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=1.1e-65 Score=526.17 Aligned_cols=374 Identities=15% Similarity=0.157 Sum_probs=344.6
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---
Q 011790 46 KEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE--- 122 (477)
Q Consensus 46 ~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg--- 122 (477)
..++..+++|+.++++.+++|+++ .+.|.. .+.|+.+.+|.++|++|.+.||+++.+|+++||
T Consensus 23 ~~~~~~~~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~ 88 (403)
T 3r7k_A 23 VAPEAWTTPERRALSQMARSFVER-------------EIAPKL-AEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGG 88 (403)
T ss_dssp --CGGGGCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH-------------hCChhH-HHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCC
Confidence 345677899999999999999998 355644 457778889999999999999999999999987
Q ss_pred HHHHHHHHHHHHhcc-cccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEE
Q 011790 123 AELRKLALLEVTGIF-DHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTY 201 (477)
Q Consensus 123 ~~~~~~~~~e~la~~-~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~ 201 (477)
++.+.+.++|++++. |+++++.+.+|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+.+++|+|++
T Consensus 89 ~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~ 168 (403)
T 3r7k_A 89 NAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVR 168 (403)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEE
Confidence 889999999999998 8888877765555778889999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccc
Q 011790 202 DANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDN 281 (477)
Q Consensus 202 ~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~ 281 (477)
++ |||+|| |+|+||||+.. |||++|+|+++++ +..|+++|+||.+ .|||++.++|+++|++++++
T Consensus 169 ~~--~g~~ln-----G~K~~vs~a~~-Ad~~~v~a~~~~~-~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~~~ 233 (403)
T 3r7k_A 169 EG--DTYVVN-----GAKTFITSGVR-ADFVTTAVRTGGP-GYGGVSLLVIDKN------SPGFEVSRRLDKMGWRCSDT 233 (403)
T ss_dssp CS--SEEEEE-----EEEEEEETTTT-CSEEEEEEECSSS-SGGGEEEEEEETT------CTTEEEEEECCBSSCTTSCE
T ss_pred EC--CEEEEE-----EEEEcccCCcc-CCEEEEEEEcCCC-CCCceEEEEEeCC------CCCeEecCcccccCCCCCCc
Confidence 86 899999 99999999997 9999999998765 5668999999976 69999999999999999999
Q ss_pred eeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 011790 282 GRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSI 361 (477)
Q Consensus 282 ~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~ 361 (477)
++|.|+||+||++++|+. ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 234 ~~v~fd~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~ 297 (403)
T 3r7k_A 234 AELSFVDVRVPADNLVGA----------------ENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGR 297 (403)
T ss_dssp EEEEEEEEEEEGGGEESS----------------TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE
T ss_pred eEEEEeeEEECHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCC
Confidence 999999999999999996 6789999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011790 362 TPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQ 441 (477)
Q Consensus 362 ~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~ 441 (477)
| |.++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.
T Consensus 298 ~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~ 365 (403)
T 3r7k_A 298 P-------LTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAG-----EDVVAEVSMAKNTAVYACDYVVNEAVQIFGGM 365 (403)
T ss_dssp E-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred c-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 8 99999999999999999999999999999999863 33456789999999999999999999999999
Q ss_pred cccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 442 GLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 442 G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 366 G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 400 (403)
T 3r7k_A 366 GYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKR 400 (403)
T ss_dssp GGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHH
T ss_pred EecCCchHHHHHHHhCcceeecCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999873
No 10
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.4e-65 Score=522.08 Aligned_cols=373 Identities=23% Similarity=0.294 Sum_probs=342.8
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch-----
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE----- 122 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg----- 122 (477)
|++.+++++.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~ 66 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKK-------------LAPTV-TERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDG 66 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHT-------------TTTTH-HHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-------------CchhH-HHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCC
Confidence 44557888899999999999873 55543 456777889999999999999999999999876
Q ss_pred -HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEE
Q 011790 123 -AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTY 201 (477)
Q Consensus 123 -~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~ 201 (477)
++.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+..++|+|++
T Consensus 67 ~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~ 146 (383)
T 1buc_A 67 GDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATK 146 (383)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEE
T ss_pred CCHHHHHHHHHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEE
Confidence 3578899999999999999988888865778889999999999999999999999999999999999999999999999
Q ss_pred e-CCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 202 D-ANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 202 ~-~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
+ + |+|+|| |+|+||||+.. |||++|+|+++++++.+|+++|+||.+ .|||++.+.|+++|+++++
T Consensus 147 ~~~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~~Gv~v~~~~~~~g~~~~~ 212 (383)
T 1buc_A 147 NDD--GTYTLN-----GSKIFITNGGA-ADIYIVFAMTDKSKGNHGITAFILEDG------TPGFTYGKKEDKMGIHTSQ 212 (383)
T ss_dssp CTT--SCEEEE-----EEEEEEETTTT-CSEEEEEEESCSSSSTTSEEEEEEETT------CTTEEEEEECCCSSCTTSC
T ss_pred cCC--CEEEEE-----EEEeccCCCCc-CCEEEEEEEeCCCCCCCceEEEEEECC------CCCeEecCccccccccCCc
Confidence 8 5 899999 99999999997 999999999875545668999999965 6999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 213 ~~~v~f~~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG 276 (383)
T 1buc_A 213 TMELVFQDVKVPAENMLGE----------------EGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFG 276 (383)
T ss_dssp EEEEEEEEEEECGGGEESC----------------TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred eeEEEEccEEeCHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCC
Confidence 9999999999999999996 678999888899999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||
T Consensus 277 ~~-------i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 344 (383)
T 1buc_A 277 KP-------LCKFQSISFKLADMKMQIEAARNLVYKAACKKQEG-----KPFTVDAAIAKRVASDVAMRVTTEAVQIFGG 344 (383)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 99999999999999999999999999999999863 3456788999999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.||+.+++++|+|||+++..+++|++++++..|++.
T Consensus 345 ~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 380 (383)
T 1buc_A 345 YGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGA 380 (383)
T ss_dssp GGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHH
T ss_pred eecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999873
No 11
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=4.1e-65 Score=518.95 Aligned_cols=371 Identities=20% Similarity=0.272 Sum_probs=340.0
Q ss_pred Hh-hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011790 48 MR-KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 48 m~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
|+ ..|++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| +
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~ 70 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEK-------------EAYPHY-NDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNAD 70 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH-------------hCchhH-HHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCC
Confidence 55 55788889999999999987 355543 456777889999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhccc-ccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEe
Q 011790 124 ELRKLALLEVTGIFD-HSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYD 202 (477)
Q Consensus 124 ~~~~~~~~e~la~~~-~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~ 202 (477)
+.+.+.++|++++.| +++++.+ |..++...|..+|+++|+++|+|++.+|++++|+++|||++|||+..++|+|+++
T Consensus 71 ~~~~~~v~eela~~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~ 148 (385)
T 2pg0_A 71 FAYSVVINEELEKVGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD 148 (385)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEc
Confidence 899999999999999 8887755 5556778899999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeC--CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 203 ANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN--GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 203 ~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~--~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
+ |||+|| |+|+||||+.. |||++|+|+++++ ++.+|+++|+||.+ .|||++.+.|+++|+++++
T Consensus 149 ~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~g~~~~~ 214 (385)
T 2pg0_A 149 G--DYYIVN-----GQKTFITNGIH-ADLIVVACKTDPQAKPPHRGISLLVVERD------TPGFTRGRKLEKVGLHAQD 214 (385)
T ss_dssp T--TEEEEE-----EEEEEETTTTT-CSEEEEEEESCTTCSSGGGGEEEEEEETT------CTTEEECCCCCBSSCTTSC
T ss_pred C--CEEEEE-----eEEecccCCcc-cCEEEEEEEeCCccCCCCCceEEEEEeCC------CCCeEecCCccccccCCCc
Confidence 6 899999 99999999997 9999999998644 34568999999965 6999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 215 ~~~v~fd~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg 278 (385)
T 2pg0_A 215 TAELFFQDAKVPAYNLLGE----------------EGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFG 278 (385)
T ss_dssp CEEEEEEEEEEEGGGEESC----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred eEEEEEcceEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 9999999999999999996 678999888899999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||
T Consensus 279 ~~-------i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g-----~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg 346 (385)
T 2pg0_A 279 KR-------VSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAG-----KQIVTEVSMAKWWITEMAKRVAAEAMQLHGG 346 (385)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred Cc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 98 99999999999999999999999999999999862 3456788999999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.||+.+++++|+|||+++..+++|++++++..|++.
T Consensus 347 ~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 382 (385)
T 2pg0_A 347 YGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQ 382 (385)
T ss_dssp GGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHH
T ss_pred cccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999873
No 12
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.4e-65 Score=524.16 Aligned_cols=372 Identities=19% Similarity=0.234 Sum_probs=340.5
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011790 47 EMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 47 ~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
.|++.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| +
T Consensus 11 ~m~~~~~~~~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~ 76 (396)
T 1egd_A 11 GFSFEFTEQQKEFQATARKFARE-------------EIIPVA-AEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLG 76 (396)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHH-------------HTHHHH-HHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH-------------hCchhH-HHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCC
Confidence 36667888999999999999987 344433 456777789999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011790 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
+.+.+.++|++++.|+++++.+ +|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|++++
T Consensus 77 ~~~~~~v~eel~~~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~ 155 (396)
T 1egd_A 77 TFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG 155 (396)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECS
T ss_pred HHHHHHHHHHHHhhCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeC
Confidence 8899999999999999998876 665566677889999999999999999999999999999999999999999999986
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCc---CceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKN---QGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~---~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
|||+|| |+|+||||+.. |||++|+|+++++++. +++++|+||.+ .|||++.+.|+++|+++++
T Consensus 156 --~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~~ 221 (396)
T 1egd_A 156 --DEYIIN-----GQKMWITNGGK-ANWYFLLARSDPDPKAPANKAFTGFIVEAD------TPGIQIGRKELNMGQRCSD 221 (396)
T ss_dssp --SEEEEE-----EEEEEEETTTT-CSEEEEEEECCCCTTSCGGGTEEEEEEETT------CTTEEECCCCCBSSCTTSC
T ss_pred --CEEEEE-----EEEEcccCCcc-cCEEEEEEEeCCCCCCCCCCCeEEEEEeCC------CCCeeeCCccccccccCCC
Confidence 899999 99999999997 9999999998754333 68999999975 7999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 222 ~~~v~fd~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG 285 (396)
T 1egd_A 222 TRGIVFEDVKVPKENVLIG----------------DGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFG 285 (396)
T ss_dssp EEEEEEEEEEEEGGGBSSS----------------TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETT
T ss_pred eeEEEECcEEECHHHcCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 9999999999999999996 678999888899999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||
T Consensus 286 ~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 353 (396)
T 1egd_A 286 KL-------LVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSG-----RRNTYYASIAKAFAGDIANQLATDAVQILGG 353 (396)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 98 99999999999999999999999999999999852 3345678999999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
.||+.+++++|+|||+++..+++|++++++..|++
T Consensus 354 ~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~ 388 (396)
T 1egd_A 354 NGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAR 388 (396)
T ss_dssp GTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999986
No 13
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=3.3e-65 Score=520.13 Aligned_cols=369 Identities=20% Similarity=0.251 Sum_probs=335.0
Q ss_pred hhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHH
Q 011790 49 RKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AEL 125 (477)
Q Consensus 49 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~ 125 (477)
+..+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.
T Consensus 13 ~~~~~~~~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~ 78 (387)
T 3nf4_A 13 RLLPSQEAAELIELTREIADK-------------VLDPIV-DRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYE 78 (387)
T ss_dssp CCCSSHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHH
T ss_pred cccCCHHHHHHHHHHHHHHHH-------------hCCccH-HHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHH
Confidence 345677889999999999987 355544 457788889999999999999999999999987 789
Q ss_pred HHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCC
Q 011790 126 RKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANT 205 (477)
Q Consensus 126 ~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~ 205 (477)
+.+.++|++++.|+++++.+.+|. ++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|++++
T Consensus 79 ~~~~v~eel~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~-- 155 (387)
T 3nf4_A 79 VYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTD-- 155 (387)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEET--
T ss_pred HHHHHHHHHHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeC--
Confidence 999999999999999999888885 77788999999999999999999999999999999999999999999999986
Q ss_pred CeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEE
Q 011790 206 GEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIW 285 (477)
Q Consensus 206 ~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~ 285 (477)
|||+|| |+|+||||+.. |||++|+|++. ++.+++++|+||.+ .|||++.+.|+++|++++++++|.
T Consensus 156 ~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~--~~~~g~~~flV~~~------~pGv~~~~~~~~~G~~~~~~~~v~ 221 (387)
T 3nf4_A 156 GGYVIN-----GSKSWITHGGK-ADFYTLFARTG--EGSRGVSCFLVPAD------QPGLSFGKPEEKMGLHAVPTTSAF 221 (387)
T ss_dssp TEEEEE-----EEEEEEETTTT-CSEEEEEEECC----CCCEEEEEEETT------CTTEEECCCCCBSSCCSSCEEEEE
T ss_pred CEEEEE-----eEEecccCCcc-cCEEEEEEEeC--CCCCceEEEEEECC------CCCeEecCcccccccCCCCeeEEE
Confidence 899999 99999999997 99999999986 33567999999976 699999999999999999999999
Q ss_pred ecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 011790 286 FDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNG 365 (477)
Q Consensus 286 f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 365 (477)
|+||+||++++|+. ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 222 fd~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~--- 282 (387)
T 3nf4_A 222 YDNARIDADRRIGE----------------EGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRK--- 282 (387)
T ss_dssp EEEEEEEGGGEESS----------------TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C---
T ss_pred EeeEEecHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCc---
Confidence 99999999999996 67899999999999999999999999999999999999999999999
Q ss_pred CccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011790 366 PEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 366 ~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
|+++|.+|++|+++.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.||+.
T Consensus 283 ----i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~ 353 (387)
T 3nf4_A 283 ----IIDHQGLGFLLADMAAAVATARATYLDAARRRDQG-----RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTR 353 (387)
T ss_dssp ----TTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcC
Confidence 99999999999999999999999999999999863 345567899999999999999999999999999999
Q ss_pred cCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 446 ENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 446 ~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+++++|+|||+++..+++|++++++..|+|.
T Consensus 354 ~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 384 (387)
T 3nf4_A 354 DYRVERYMREAKIMQIFEGTNQIQRLVIARG 384 (387)
T ss_dssp TSSHHHHHHHHHHHTTSSSCHHHHHHHHHHT
T ss_pred CCcHHHHHhHhhcCeeecChHHHHHHHHHHH
Confidence 9999999999999999999999999999975
No 14
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=5e-66 Score=527.52 Aligned_cols=375 Identities=20% Similarity=0.218 Sum_probs=339.0
Q ss_pred CHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch-
Q 011790 44 DLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE- 122 (477)
Q Consensus 44 ~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg- 122 (477)
|+..|++.+++|+.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus 11 ~~~~m~~~~~~e~~~l~~~~r~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~ 76 (396)
T 3ii9_A 11 DPLLLDQQLADDERMVRDAAHAYAQGK-------------LAPRV-TEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGP 76 (396)
T ss_dssp STTCGGGGSCHHHHHHHHHHHHHCCCC-------------CHHHH-HHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSC
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHh-------------CChhH-HHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCC
Confidence 455688999999999999999999873 44543 456777889999999999999999999999987
Q ss_pred --HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEE
Q 011790 123 --AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT 200 (477)
Q Consensus 123 --~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~ 200 (477)
++.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+
T Consensus 77 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~ 156 (396)
T 3ii9_A 77 GLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRAR 156 (396)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEE
Confidence 789999999999999999998888886666778999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 201 YDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 201 ~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
+++ |||+|| |+|.||||+.. |||++|+|+++++ +.+|+++|+||.+ .|||++.+.|+++|+++++
T Consensus 157 ~~~--~g~~ln-----G~K~~vs~a~~-Ad~~~v~a~~~~~-g~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~~ 221 (396)
T 3ii9_A 157 KVP--GGYSLS-----GSKMWITNSPI-ADVFVVWAKLDED-GRDEIRGFILEKG------CKGLSAPAIHGKVGLRASI 221 (396)
T ss_dssp EET--TEEEEE-----EEEEEEETGGG-CSEEEEEEEEEET-TEEEEEEEEEETT------CTTEECCBCCCCSSCTTSC
T ss_pred EeC--CEEEEE-----EEEEeECCCcc-CCEEEEEEEecCC-CCCceEEEEEecC------CCCeEeccccccccCCcCC
Confidence 986 999999 99999999997 9999999999743 3457999999976 6999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. +.|+...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 222 ~~~v~fddv~Vp~~~~l~~-----------------~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg 284 (396)
T 3ii9_A 222 TGEIVLDEAFVPEENILPH-----------------VKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFG 284 (396)
T ss_dssp EEEEEEEEEEEEGGGBCTT-----------------CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred eeEEEEccEEECHHHccCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCC
Confidence 9999999999999999973 45677778889999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||
T Consensus 285 ~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg 352 (396)
T 3ii9_A 285 RP-------LAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEG-----TAAVEITSIMKRNSCGKALDIARLARDMLGG 352 (396)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred Cc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 98 99999999999999999999999999999999873 3455678999999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 353 ~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~ 388 (396)
T 3ii9_A 353 NGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388 (396)
T ss_dssp CSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred ccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999873
No 15
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=6.9e-65 Score=514.98 Aligned_cols=364 Identities=21% Similarity=0.249 Sum_probs=336.5
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHH
Q 011790 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKL 128 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~ 128 (477)
+++|+.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+
T Consensus 3 ~~~e~~~l~~~~r~~~~~~-------------~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~ 68 (372)
T 2dvl_A 3 LTQEQRLVLDAVRRVAREV-------------LYPLA-PEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWA 68 (372)
T ss_dssp CCHHHHHHHHHHHHHHHHT-------------HHHHH-HHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh-------------CchhH-HHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHH
Confidence 5677889999999999873 44433 356667779999999999999999999999987 789999
Q ss_pred HHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeE
Q 011790 129 ALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEF 208 (477)
Q Consensus 129 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ 208 (477)
.++|++++.|+++++.+.+|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|++++ |||
T Consensus 69 ~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~ 146 (372)
T 2dvl_A 69 LALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVK--GGF 146 (372)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEET--TEE
T ss_pred HHHHHHHhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEEC--CEE
Confidence 999999999999998888885567888999999999999999999999999999999999999999999999986 899
Q ss_pred EEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecc
Q 011790 209 IINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDN 288 (477)
Q Consensus 209 ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~ 288 (477)
+|| |+|+||||+.. |||++|+|++++ |+++|+||.+ .|||++.+.|+++|++++++++|.|||
T Consensus 147 ~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~-----g~~~flV~~~------~pGv~v~~~~~~~G~~~~~~~~v~fd~ 209 (372)
T 2dvl_A 147 VLN-----GVKSWITSAGH-AHLYVVMARTEK-----GISAFLVEKG------TPGLSFGRPEEKMGLHAAHTAEVRLEE 209 (372)
T ss_dssp EEE-----EEEEEEETTTT-CSEEEEEEEETT-----EEEEEEEETT------CTTEEECCCCCCSSCTTSCEEEEEEEE
T ss_pred EEE-----eEEEeecCCCc-CCEEEEEEEeCC-----CcEEEEEeCC------CCCeEecCcccccccCcCCeeEEEECc
Confidence 999 99999999997 999999999742 6899999965 699999999999999999999999999
Q ss_pred eecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcc
Q 011790 289 VRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEV 368 (477)
Q Consensus 289 v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~ 368 (477)
|+||++++|+. ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 210 v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~------ 267 (372)
T 2dvl_A 210 VFVPEENLLGE----------------EGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKK------ 267 (372)
T ss_dssp EEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE------
T ss_pred EEeCHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCc------
Confidence 99999999996 67889888889999999999999999999999999999999999998
Q ss_pred ccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCc
Q 011790 369 LLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENR 448 (477)
Q Consensus 369 ~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~ 448 (477)
|.++|.+|++|++|.+++++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.||+.+++
T Consensus 268 -i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~ 341 (372)
T 2dvl_A 268 -LKEHQAIAFKIADMHVKIAAARALVLEAARKKDRG-----ERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYR 341 (372)
T ss_dssp -GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGS
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCCc
Confidence 99999999999999999999999999999998752 345568899999999999999999999999999999999
Q ss_pred hHHhhhcccccccccccHHHHHHHhhcC
Q 011790 449 VGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 449 l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++|+|||+++..+++|++++++..|++.
T Consensus 342 ~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 369 (372)
T 2dvl_A 342 VERYYRDAKVTEIYEGTSEIQRLVIARE 369 (372)
T ss_dssp HHHHHHHHHGGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999999873
No 16
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=9e-65 Score=517.92 Aligned_cols=369 Identities=18% Similarity=0.241 Sum_probs=340.2
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHH--HHHHHHHHcCccccccccccch---HHH
Q 011790 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTM--KRISYLLERNVFEGWLTAKGAE---AEL 125 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~l~~~Gl~~~~~p~~~Gg---~~~ 125 (477)
.+++|+.++++.+++|+++ .+.|.. .+.|+.+.+|. +.|++|.+.||+++.+|+++|| ++.
T Consensus 12 ~~~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~ 77 (394)
T 1ivh_A 12 GLSEEQRQLRQTMAKFLQE-------------HLAPKA-QEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYL 77 (394)
T ss_dssp TCCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHH-------------hCChhH-HHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHH
Confidence 3677888999999999987 355533 45677777888 9999999999999999999987 789
Q ss_pred HHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCC
Q 011790 126 RKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANT 205 (477)
Q Consensus 126 ~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~ 205 (477)
+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|++++
T Consensus 78 ~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~-- 155 (394)
T 1ivh_A 78 EHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKG-- 155 (394)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECS--
T ss_pred HHHHHHHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcC--
Confidence 999999999999999999888886577888999999999999999999999999999999999999999999999986
Q ss_pred CeEEEecCCCCceeeeecCccccccEEEEEEEeeeC--CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011790 206 GEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN--GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 206 ~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~--~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
|||+|| |+|+||||+.. |||++|+|+++++ ++.+|+++|+||.+ .|||++.+.|+++|++++++++
T Consensus 156 ~g~~ln-----G~K~~vs~~~~-Ad~~~v~ar~~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~~~~~ 223 (394)
T 1ivh_A 156 NHYILN-----GNKFWITNGPD-ADVLIVYAKTDLAAVPASRGITAFIVEKG------MPGFSTSKKLDKLGMRGSNTCE 223 (394)
T ss_dssp SEEEEE-----EEEEEEETGGG-CSEEEEEEESCTTCSSGGGGEEEEEEETT------CTTEEECCCCCBSSCTTSCEEE
T ss_pred CEEEEE-----eEEEeeCCCCc-CCEEEEEEEeCCcccCCCCCeEEEEEeCC------CCCeEeccccccccCCCCCeeE
Confidence 899999 99999999997 9999999998644 33468999999975 6999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011790 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
|.|+||+||++++|+. ++.||...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 224 v~fd~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~- 286 (394)
T 1ivh_A 224 LIFEDCKIPAANILGH----------------ENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQK- 286 (394)
T ss_dssp EEEEEEEEEGGGEESC----------------TTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEE-
T ss_pred EEECcEEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcc-
Confidence 9999999999999996 67889888889999999999999999999999999999999999998
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011790 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||.||
T Consensus 287 ------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~ 355 (394)
T 1ivh_A 287 ------IGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEG-----HCTAKDCAGVILYSAECATQVALDGIQCFGGNGY 355 (394)
T ss_dssp ------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999998752 2345678999999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
+.+++++|+|||+++..+++|++++++..|++
T Consensus 356 ~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~ 387 (394)
T 1ivh_A 356 INDFPMGRFLRDAKLYEIGAGTSEVRRLVIGR 387 (394)
T ss_dssp BTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHH
T ss_pred cCCchHHHHHHhcccccccCChHHHHHHHHHH
Confidence 99999999999999999999999999999986
No 17
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-64 Score=518.31 Aligned_cols=373 Identities=20% Similarity=0.228 Sum_probs=344.8
Q ss_pred CCCCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHH-HHHHHHHHHcCccccccccc
Q 011790 41 YDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMT-MKRISYLLERNVFEGWLTAK 119 (477)
Q Consensus 41 ~~~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~p~~ 119 (477)
...|...|++.+++++.++++.+++|+++ ++.|.. .+.|+.+.+| .++|++|.+.||+++.+ ++
T Consensus 19 ~~~~~~~m~~~l~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e 83 (403)
T 3sf6_A 19 GADDLIGINAVLSAEEREIRDTVRSVVQR-------------RIKPHI-ASWYEDGELPARELAVELGELGLLGMHL-KG 83 (403)
T ss_dssp CHHHHHTCGGGSCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTCCCHHHHHHHHHHTTCSSTTS-CS
T ss_pred CCcchhccCCCCCHHHHHHHHHHHHHHHH-------------hcChhH-HHHHhcCCCCHHHHHHHHHHCCCCcccc-hh
Confidence 34566779999999999999999999998 355643 4567778899 99999999999999999 99
Q ss_pred cch---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCe
Q 011790 120 GAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIE 196 (477)
Q Consensus 120 ~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~ 196 (477)
+|| ++.+.+.++|++++.|+++++.+.+|.+++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++
T Consensus 84 ~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~ 163 (403)
T 3sf6_A 84 YGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMR 163 (403)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCC
T ss_pred hCCCCCCHHHHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcE
Confidence 987 78999999999999999999888888767788899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCcccc
Q 011790 197 TVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGL 276 (477)
Q Consensus 197 t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl 276 (477)
|+|++++ |||+|| |+|.||||+.. |||++|+|+++ +|+++|+||.+ .|||++.+.|+++|+
T Consensus 164 t~A~~~~--~g~~ln-----G~K~~is~a~~-Ad~~~v~ar~~-----~g~~~flV~~~------~pGv~v~~~~~~~G~ 224 (403)
T 3sf6_A 164 TRATRSG--DDWILT-----GTKMWITNGSV-ADVAVVWARTD-----EGIRGFVVPTD------TPGFTANTIKSKMSL 224 (403)
T ss_dssp CEEEEET--TEEEEE-----EEEEEEETGGG-CSEEEEEEEET-----TEEEEEEEETT------STTEEEEECCSCSSC
T ss_pred EEEEEEC--CEEEEE-----EEEEeecCCcc-cCEEEEEEEeC-----CceEEEEEECC------CCCeEecCCCCccCC
Confidence 9999996 899999 99999999997 99999999974 36999999976 699999999999999
Q ss_pred CcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011790 277 NGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSR 356 (477)
Q Consensus 277 ~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R 356 (477)
+++++++|.|+||+||++++|+. +.++...+..+..+|+.+++.++|+++++++.+++|+++|
T Consensus 225 r~~~~~~v~fd~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R 287 (403)
T 3sf6_A 225 RASVTSELVLDGVRLPDSARLPG-----------------ATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSR 287 (403)
T ss_dssp TTSCEEEEEEEEEEEEGGGBCTT-----------------CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeEEEEccEEEcHHHccCC-----------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999983 4566777888999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011790 357 RAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECRE 436 (477)
Q Consensus 357 ~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~ 436 (477)
+|||+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|
T Consensus 288 ~~fg~p-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~q 355 (403)
T 3sf6_A 288 EQFDRP-------IGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAG-----ELAPEQVSLGKLNNVREAIEIARTART 355 (403)
T ss_dssp EETTEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999999999999999999863 344577899999999999999999999
Q ss_pred HhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 437 ACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 437 ~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+|||.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 356 ~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 395 (403)
T 3sf6_A 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQA 395 (403)
T ss_dssp HHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred hcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999873
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.6e-64 Score=514.23 Aligned_cols=370 Identities=18% Similarity=0.225 Sum_probs=340.0
Q ss_pred hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011790 50 KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
..+++|+.++++.+++|++++ +.|.. .++|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+
T Consensus 17 ~~~~~e~~~~~~~~r~~~~~~-------------~~~~~-~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~ 82 (393)
T 1rx0_A 17 MGLNEEQKEFQKVAFDFAARE-------------MAPNM-AEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLD 82 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-------------THHHH-HHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh-------------CCccH-HHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHH
Confidence 347888899999999999883 44533 356777788999999999999999999999987 7889
Q ss_pred HHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCC
Q 011790 127 KLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~ 206 (477)
.+.++|++++.|+++++.+.+|. ++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|++++ |
T Consensus 83 ~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~--~ 159 (393)
T 1rx0_A 83 TSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQG--D 159 (393)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEET--T
T ss_pred HHHHHHHHHHhCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcC--C
Confidence 99999999999999988888875 67788999999999999999999999999999999999999999999999986 8
Q ss_pred eEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEe
Q 011790 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWF 286 (477)
Q Consensus 207 ~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f 286 (477)
+|+|| |+|.||||+.. ||+++|+|++.+ ++.+|+++|+||.+ .|||++.+.++++|++++++++|.|
T Consensus 160 g~~ln-----G~K~~is~a~~-Ad~~~v~a~~~~-~~~~g~~~flV~~~------~pGv~v~~~~~~~g~~~~~~~~v~f 226 (393)
T 1rx0_A 160 HYILN-----GSKAFISGAGE-SDIYVVMCRTGG-PGPKGISCIVVEKG------TPGLSFGKKEKKVGWNSQPTRAVIF 226 (393)
T ss_dssp EEEEE-----EEEEEEETTTT-CSEEEEEEESSS-SSGGGEEEEEEETT------CTTEEECCCCCBSSCTTSCEEEEEE
T ss_pred EEEEE-----eEEEeecCCcc-CCEEEEEEEcCC-CCCCceEEEEEeCC------CCCeEecCcccccccCCCCceEEEE
Confidence 99999 99999999997 999999999864 34568999999975 7999999999999999999999999
Q ss_pred cceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 011790 287 DNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGP 366 (477)
Q Consensus 287 ~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~ 366 (477)
|||+||++++|+. ++.+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 227 d~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~---- 286 (393)
T 1rx0_A 227 EDCAVPVANRIGS----------------EGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEP---- 286 (393)
T ss_dssp EEEEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE----
T ss_pred cCeEeCHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCc----
Confidence 9999999999996 67789888888999999999999999999999999999999999998
Q ss_pred ccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 011790 367 EVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTE 446 (477)
Q Consensus 367 ~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~ 446 (477)
|+++|.+|++|++|.+++++++++++++++.++.. .......++++|+++++.+.++++.|+|++||.||+.+
T Consensus 287 ---i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~----~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~ 359 (393)
T 1rx0_A 287 ---LASNQYLQFTLADMATRLVAARLMVRNAAVALQEE----RKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKD 359 (393)
T ss_dssp ---GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTT
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 99999999999999999999999999999999852 23456788999999999999999999999999999999
Q ss_pred CchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 447 NRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 447 ~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++++|+|||+++..+++|++++++..|+|.
T Consensus 360 ~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 389 (393)
T 1rx0_A 360 YAVQQYVRDSRVHQILEGSNEVMRILISRS 389 (393)
T ss_dssp STHHHHHHHHHHTTTSSSCHHHHHHHHHHH
T ss_pred ChHHHHHHhccCceecCChHHHHHHHHHHH
Confidence 999999999999999999999999999873
No 19
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-64 Score=515.73 Aligned_cols=368 Identities=18% Similarity=0.220 Sum_probs=334.7
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011790 47 EMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 47 ~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
.|++.+++|+.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| +
T Consensus 6 ~~~~~~~~~~~~l~~~~r~~~~~~-------------~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~ 71 (385)
T 2eba_A 6 ALEDLLTPEEKEVQKAARRFLEKE-------------ALPHI-RDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVS 71 (385)
T ss_dssp CGGGGSCHHHHHHHHHHHHHHHHH-------------THHHH-HHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHh-------------CCccH-HHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCC
Confidence 477788889999999999999873 44433 345666778899999999999999999999987 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCC-CCCeeEEEEe
Q 011790 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV-RGIETVTTYD 202 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~-~~~~t~A~~~ 202 (477)
+.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+ .+++|+|+++
T Consensus 72 ~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~ 151 (385)
T 2eba_A 72 SAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARRE 151 (385)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC-
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEe
Confidence 889999999999999999998888876777889999999999999999999999999999999999999 9999999998
Q ss_pred CCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccce
Q 011790 203 ANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNG 282 (477)
Q Consensus 203 ~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~ 282 (477)
+ |||+|| |+|+||||+.. |||++|+|+++ ++ + +++|+||.+ .|||++.+.|+++|+++++++
T Consensus 152 ~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~-~g--~-~~~flV~~~------~pGv~v~~~~~~~G~~~~~~~ 213 (385)
T 2eba_A 152 G--DTWVLN-----GTKMWITNGNL-AHLAVIWAKDE-GG--E-VLGFLVPTD------TPGFQAREVKRKMSLRASVTS 213 (385)
T ss_dssp ---CEEEEE-----EEEEEEETTTT-CSEEEEEEECC-------EEEEEEETT------STTEEEEECCSBSSSCSSCEE
T ss_pred C--CEEEEE-----eeeeccCCCcc-cCEEEEEEEeC-CC--c-EEEEEEeCC------CCCeEecccccccccccCcee
Confidence 6 899999 99999999997 99999999985 22 2 899999975 699999999999999999999
Q ss_pred eEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 011790 283 RIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSIT 362 (477)
Q Consensus 283 ~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 362 (477)
+|.|+||+||++++| . ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 214 ~v~f~~v~Vp~~~~l-~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~ 276 (385)
T 2eba_A 214 ELVLEEVRVPESLRL-P----------------KALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEP 276 (385)
T ss_dssp EEEEEEEEEEGGGBC-T----------------TCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSB
T ss_pred EEEEccEEEcHHHcc-C----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCee
Confidence 999999999999999 4 45677777888889999999999999999999999999999999998
Q ss_pred CCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011790 363 PNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQG 442 (477)
Q Consensus 363 ~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G 442 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||.|
T Consensus 277 -------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g-----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g 344 (385)
T 2eba_A 277 -------LAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEG-----KLTPAQVSLAKRQNVWKALQAARMARDILGGSG 344 (385)
T ss_dssp -------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -------HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999852 334567889999999999999999999999999
Q ss_pred ccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 443 LKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 443 ~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
|+.+++++|+|||+++..+++|++++++..|+|
T Consensus 345 ~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~ 377 (385)
T 2eba_A 345 ITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGR 377 (385)
T ss_dssp GBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cCCcChHHHHHHhccCceeeCChHHHHHHHHHH
Confidence 999999999999999999999999999999986
No 20
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=1.9e-64 Score=520.92 Aligned_cols=371 Identities=24% Similarity=0.268 Sum_probs=337.3
Q ss_pred CHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch-
Q 011790 44 DLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE- 122 (477)
Q Consensus 44 ~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg- 122 (477)
|.-.|++.+++|+.++++.+++|+++ ++.|.. .+.++.+.+|.+.|++|.+.||+++.+| ++||
T Consensus 47 ~~~~~~~~l~~e~~~l~~~~r~f~~~-------------~~~p~~-~~~~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~ 111 (436)
T 2ix5_A 47 DYYHFNDLLTPEEQAIRKKVRECMEK-------------EVAPIM-TEYWEKAEFPFHITPKLGAMGVAGGSIK-GYGCP 111 (436)
T ss_dssp CTTCGGGGSCHHHHHHHHHHHHHHHH-------------HTHHHH-HHHHHHTCCCGGGHHHHHTTTCTTTTCC-STTCC
T ss_pred chhhcCCCCCHHHHHHHHHHHHHHHh-------------hCChhh-HHHHhcCCCCHHHHHHHHHcCCCcCcCC-CCCCC
Confidence 33346778999999999999999988 344543 3445567789999999999999999999 8877
Q ss_pred --HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEE
Q 011790 123 --AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT 200 (477)
Q Consensus 123 --~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~ 200 (477)
++.+.+.++|+++++|+++++.+.+|..+++..|..+|+++|+++|||++.+|++++|+++|||++|||+.+++|+|+
T Consensus 112 G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~ 191 (436)
T 2ix5_A 112 GLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTAT 191 (436)
T ss_dssp CCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEE
T ss_pred CCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEE
Confidence 788999999999999999988788886677888999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011790 201 YDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 201 ~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
+++ |||+|| |+|+||||+.. |||++|+|++.++ .++++|+||.+ .|||++.+.|+++|+++++
T Consensus 192 ~~g--dg~vLn-----G~K~~is~a~~-Ad~~lv~Ar~~~~---~~~~~flV~~~------~pGv~v~~~~~~~G~r~~~ 254 (436)
T 2ix5_A 192 KVE--GGWKIN-----GQKRWIGNSTF-ADLLIIFARNTTT---NQINGFIVKKD------APGLKATKIPNKIGLRMVQ 254 (436)
T ss_dssp EET--TEEEEE-----EEEEEEETTTT-CSEEEEEEEETTT---SSEEEEEEETT------CTTEEEEECCCBSSSTTSC
T ss_pred EeC--CEEEEe-----eeccCCCCCcc-cCEEEEEEEECCC---CcEEEEEEECC------CCCeEeeccccccCCCcCC
Confidence 986 899999 99999999997 9999999997532 36899999975 7999999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011790 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+||++++|+. + .+|...+..+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 255 ~~~v~fddv~VP~~~~lg~----------------~-~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG 317 (436)
T 2ix5_A 255 NGDILLQNVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFG 317 (436)
T ss_dssp EEEEEEEEEEEEGGGBCTT----------------C-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETT
T ss_pred ceeEEeccEEECHHHcCCc----------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCC
Confidence 9999999999999999984 2 4577778889999999999999999999999999999999999
Q ss_pred CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 361 ~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+| |+++|.+|++|++|.+++++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||
T Consensus 318 ~p-------i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g-----~~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg 385 (436)
T 2ix5_A 318 AP-------LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETG-----QMTPGQASLGKAWISSKARETASLGRELLGG 385 (436)
T ss_dssp EE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred cc-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 98 99999999999999999999999999999999863 2345678899999999999999999999999
Q ss_pred ccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 441 QGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 441 ~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
.||+.+++++|+|||+++..+++|++++++..|+|
T Consensus 386 ~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar 420 (436)
T 2ix5_A 386 NGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGR 420 (436)
T ss_dssp GGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cccccCChHHHHHHHhhcceeecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999986
No 21
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=8.6e-64 Score=532.57 Aligned_cols=371 Identities=20% Similarity=0.269 Sum_probs=333.9
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHH-HHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011790 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQ-REMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
.+++|+.++++.+++|++++ +.|.. .++++. ..+|.++|++|.+.||+++.+|++||| ++.+
T Consensus 32 ~lt~eq~~l~~~vr~f~~~~-------------~~p~~-~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~ 97 (597)
T 3owa_A 32 DFSSEHKMIAKTTEDFIVNE-------------VLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVS 97 (597)
T ss_dssp GCCHHHHHHHHHHHHHHHHH-------------TGGGH-HHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh-------------CchhH-HHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHH
Confidence 46778899999999999983 44543 234443 368999999999999999999999988 7889
Q ss_pred HHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCC
Q 011790 127 KLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~ 206 (477)
.+.+.|++++.+++ +..+..|.+++...|..+|+++|+++|||++.+|++++|+++|||++|||+.+++|+|+++++++
T Consensus 98 ~~~v~Eel~~~~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~ 176 (597)
T 3owa_A 98 SALIAEKFSRAGGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGT 176 (597)
T ss_dssp HHHHHHHHGGGTHH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSS
T ss_pred HHHHHHHHHccchH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCC
Confidence 99999999998743 44455665566667889999999999999999999999999999999999999999999987667
Q ss_pred eEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEe
Q 011790 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWF 286 (477)
Q Consensus 207 ~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f 286 (477)
+|+|| |+|+||||+.. |||++|+|++++ .|+++|+||.+ .|||++.+.|+++|++++++++|.|
T Consensus 177 ~yvLn-----G~K~~is~a~~-Ad~~lV~Art~~----~g~s~flV~~~------~pGv~v~~~~~~~Glrgs~t~~v~f 240 (597)
T 3owa_A 177 HYVLN-----GEKQWITNSAF-ADVFIVYAKIDG----EHFSAFIVEKD------YAGVSTSPEEKKMGIKCSSTRTLIL 240 (597)
T ss_dssp EEEEE-----EEEEEEETTTT-CSEEEEEEEETT----TEEEEEEEETT------STTEEECCCCCBSSCTTSCEEEEEE
T ss_pred EEEEe-----eEEEEeCCCcc-CCEEEEEEEeCC----CceEEEEEeCC------CCCeEEecccccccCCCCCceEEEE
Confidence 89999 99999999997 999999999742 37999999965 6999999999999999999999999
Q ss_pred cceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 011790 287 DNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGP 366 (477)
Q Consensus 287 ~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~ 366 (477)
+||+||++++||. ++.|+...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 241 ddV~VP~~~lLG~----------------~g~G~~~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~p---- 300 (597)
T 3owa_A 241 EDALVPKENLLGE----------------IGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQP---- 300 (597)
T ss_dssp EEEEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE----
T ss_pred eceeecHHHhcCc----------------ccchHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcc----
Confidence 9999999999996 67899999999999999999999999999999999999999999998
Q ss_pred ccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHHHHHHHHHHHHH
Q 011790 367 EVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN--------------KTIHVVSSAFKAILTWHNMRTLQ 432 (477)
Q Consensus 367 ~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~K~~a~~~a~~~~~ 432 (477)
|+++|.+|++|++|.+.+++++++++++++.++....... .+....++++|+++++.+.++++
T Consensus 301 ---i~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~ 377 (597)
T 3owa_A 301 ---IARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVD 377 (597)
T ss_dssp ---GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986422210 13456789999999999999999
Q ss_pred HHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 433 ECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 433 ~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
.|+|+|||+||+.++|++|+|||+++..+++|+|++++..|++
T Consensus 378 ~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~ 420 (597)
T 3owa_A 378 EGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPG 420 (597)
T ss_dssp HHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHH
T ss_pred HHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886
No 22
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.4e-64 Score=515.65 Aligned_cols=371 Identities=20% Similarity=0.241 Sum_probs=342.4
Q ss_pred CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch
Q 011790 43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE 122 (477)
Q Consensus 43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg 122 (477)
.|+..|++.+++|+.++++.+++|++++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+ +++||
T Consensus 17 ~~~~~m~~~l~~e~~~l~~~~r~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG 81 (399)
T 3swo_A 17 LELFDTDRLLDQDERDIAATVRQFVDTR-------------LKPNV-EGWFESATLPSELAKEFGNLGVLGMHL-QGYGC 81 (399)
T ss_dssp HHHHTGGGGSCHHHHHHHHHHHHHHHHH-------------THHHH-HHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTC
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHh-------------CChhH-HHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCC
Confidence 3455678889999999999999999983 44543 456777789999999999999999999 99987
Q ss_pred ---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEE
Q 011790 123 ---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199 (477)
Q Consensus 123 ---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A 199 (477)
++.+.+.++|+++++|+++++.+.+|..++...|..+|+++|+++|||++.+|++++|+++|||++|||+.+++|+|
T Consensus 82 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A 161 (399)
T 3swo_A 82 AGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRA 161 (399)
T ss_dssp CCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEE
Confidence 78999999999999999998888888667788899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcc
Q 011790 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGV 279 (477)
Q Consensus 200 ~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~ 279 (477)
++++ |||+|| |+|+||||+.. |||++|+|+++ +|+++|+||.+ .|||++.+.|+++|++++
T Consensus 162 ~~~~--~g~~ln-----G~K~~vs~a~~-Ad~~~v~a~~~-----~g~~~flV~~~------~pGv~v~~~~~~~G~r~~ 222 (399)
T 3swo_A 162 RRDG--SDWILN-----GTKMWITNGNL-ADVATVWAQTD-----DGIRGFLVPTD------TPGFTANEIHRKLSLRAS 222 (399)
T ss_dssp EEET--TEEEEE-----EEEEEEETTTT-CSEEEEEEBCT-----TSCEEEEEETT------STTEEEEECCCBSSCCSS
T ss_pred EEeC--CEEEEE-----EEEEeECCCCc-cCEEEEEEEeC-----CceEEEEEeCC------CCCeEeecCcCcccCCCC
Confidence 9996 899999 99999999997 99999999974 46899999976 699999999999999999
Q ss_pred cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011790 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359 (477)
Q Consensus 280 ~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf 359 (477)
++++|.|+||+||++++|+. +.|+...+..+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 223 ~~~~v~fd~v~Vp~~~~lg~-----------------~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~f 285 (399)
T 3swo_A 223 VTSELVLDNVRLPASAQLPL-----------------AEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVF 285 (399)
T ss_dssp CEEEEEEEEEEECGGGBCTT-----------------CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred ceeEEEEccEEEcHHHcCCC-----------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeC
Confidence 99999999999999999983 4567777888999999999999999999999999999999999
Q ss_pred CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011790 360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACG 439 (477)
Q Consensus 360 g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G 439 (477)
|+| |+++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|+||
T Consensus 286 G~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~G 353 (399)
T 3swo_A 286 DKP-------LSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAE-----GVRPEQISLGKLNNVREAIAIARECRTLLG 353 (399)
T ss_dssp TEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred Ccc-------hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 998 99999999999999999999999999999999863 445678899999999999999999999999
Q ss_pred cccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 440 GQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 440 g~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus 354 g~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~ 390 (399)
T 3swo_A 354 GSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKA 390 (399)
T ss_dssp GGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999873
No 23
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-63 Score=528.14 Aligned_cols=368 Identities=19% Similarity=0.244 Sum_probs=333.4
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHH----HHHHHHHHHHHHcCccccccccccch---HH
Q 011790 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQR----EMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
+++|++++++.+++|++++ +.|. .++.. .+|.+.|+.|.+.||+++.+|++||| +.
T Consensus 28 ~~~e~~~l~~~~~~~~~~~-------------~~p~----~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~ 90 (577)
T 2z1q_A 28 FDESVKEIARTTRTFVERE-------------VLPL----LERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPK 90 (577)
T ss_dssp CCHHHHHHHHHHHHHHHTT-------------THHH----HHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCH
T ss_pred CCHHHHHHHHHHHHHHhcc-------------Cchh----HHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCH
Confidence 4677889999999999883 4443 23322 68999999999999999999999988 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011790 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++ ..|+++++.+.+|.+++...|..+|+++||++|||++.+|++++|+++|||++|||+.+++|+|+++++
T Consensus 91 ~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~d 169 (577)
T 2z1q_A 91 VISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSED 169 (577)
T ss_dssp HHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTT
T ss_pred HHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCC
Confidence 8999999999 778999888888876767789999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011790 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
+++|+|| |+|+||||+.. |||++|+|+++ + +|+++|+||.+ .|||++.+.|+++|+++++++.|
T Consensus 170 G~~~vLn-----G~K~~it~a~~-Ad~~~V~Ar~~--g--~gis~flVp~~------~pGv~v~~~~~~~G~~~~~~~~v 233 (577)
T 2z1q_A 170 GKHYILN-----GVKQWISNAGF-AHLFTVFAKVD--G--EHFTAFLVERD------TPGLSFGPEEKKMGIKASSTRQV 233 (577)
T ss_dssp SSEEEEE-----EEEEEEETTTT-CSEEEEEEEET--T--TEEEEEEEETT------CTTEEECCCCCBSSCTTSCEEEE
T ss_pred CCEEEEE-----EEeeCCCCCCc-cCEEEEEEEeC--C--CeeEEEEEeCC------CCCeEecCCCCCCCCCCCceeEE
Confidence 6799999 99999999997 99999999974 2 57999999954 79999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011790 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||.+++||. ++.||..++..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 234 ~fddv~VP~~~llg~----------------~g~g~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~p-- 295 (577)
T 2z1q_A 234 ILEDVKVPVENVLGE----------------IGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRP-- 295 (577)
T ss_dssp EEEEEEEEGGGEESC----------------TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSSB--
T ss_pred EecceeccHHHccCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCc--
Confidence 999999999999996 67889999999999999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--C-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011790 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQ--S-------NKTIHVVSSAFKAILTWHNMRTLQECR 435 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~--~-------~~~~~~~~~~~K~~a~~~a~~~~~~~~ 435 (477)
|++||.+|++|++|.+.+++++++++++++.++..... . ..+....++++|+++++.+.++++.|+
T Consensus 296 -----i~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~ 370 (577)
T 2z1q_A 296 -----IGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGV 370 (577)
T ss_dssp -----GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753100 0 023457789999999999999999999
Q ss_pred HHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011790 436 EACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 436 ~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|+|||+||+.+++++++|||+++..+++|+|++++..|++.
T Consensus 371 qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~ 411 (577)
T 2z1q_A 371 QIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGM 411 (577)
T ss_dssp HHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGG
T ss_pred HHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764
No 24
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=3.9e-64 Score=513.91 Aligned_cols=371 Identities=19% Similarity=0.240 Sum_probs=342.3
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHH-HHHHHHHHHcCccccccccccch----
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMT-MKRISYLLERNVFEGWLTAKGAE---- 122 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~p~~~Gg---- 122 (477)
|++.+++++.++++.+++|+++ .+.|.. .+.|+.+.+| .++|++|.+.||+++.+|+++||
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~ 66 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNK-------------KIVPFA-DQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMD 66 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHH-------------HTTTTH-HHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-------------hCChhH-HHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCC
Confidence 5667888999999999999998 355543 4577778899 99999999999999999999987
Q ss_pred -HHHHHHHHHHHHhcccccchhhHhhhhhhHHH-HHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEE
Q 011790 123 -AELRKLALLEVTGIFDHSLAIKIGVHFFLWGG-AIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT 200 (477)
Q Consensus 123 -~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~-~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~ 200 (477)
++.+.+.+.|++++.|+++++.+.+|. ++.. .|..+|+++|+++|+|++.+|++++|+++|||++|||+..++|+|+
T Consensus 67 ~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~ 145 (397)
T 3mpi_A 67 QGWLAAMIVTEEIARGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAE 145 (397)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEE
T ss_pred CCHHHHHHHHHHHHhhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEE
Confidence 567888999999999999999888884 5666 8999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEE-EeeCCCCCCCCCeEEccCCCccccCcc
Q 011790 201 YDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFIC-QIRDAAGNICPNIRIADCGHKIGLNGV 279 (477)
Q Consensus 201 ~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV-~~~~~~~~~~pGv~i~~~~~~~Gl~g~ 279 (477)
+++ |||+|| |+|.||||+.. |||++|+|++.++++..|+++|+| |.+ .|||++ +.|+++|++++
T Consensus 146 ~~~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~~------~~Gv~v-~~~~~~G~~~~ 210 (397)
T 3mpi_A 146 DKG--DHWLLN-----GSKTWISNAAQ-ADVLIYYAYTDKAAGSRGLSAFVIEPRN------FPGIKT-SNLEKLGSHAS 210 (397)
T ss_dssp ECS--SEEEEE-----EEEEEEETTTT-CSSEEEEEESCGGGGGGSEEEEEECTTT------STTEEE-EECCCSSCTTS
T ss_pred EeC--CEEEEE-----EEEEeeCCCcc-cCEEEEEEEcCCCCCCCceEEEEEEcCC------CCCeEe-ccCccccCcCC
Confidence 986 899999 99999999997 999999999876555668999999 865 699999 88999999999
Q ss_pred cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011790 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359 (477)
Q Consensus 280 ~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf 359 (477)
++++|.|+||+||++++|+. ++.++...+..+...|+.+++.++|+++++++.+++|+++|+||
T Consensus 211 ~~~~v~fddv~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 274 (397)
T 3mpi_A 211 PTGELFLDNVKVPKENILGK----------------PGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQF 274 (397)
T ss_dssp CEEEEEEEEEEEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred ceeEEEEeeEEECHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 99999999999999999996 67889998999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011790 360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACG 439 (477)
Q Consensus 360 g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G 439 (477)
|+| |+++|.+|++|++|.+.+++++++++++++.++.. .......++++|+++++.+.++++.++|+||
T Consensus 275 g~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~----~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~G 343 (397)
T 3mpi_A 275 GKP-------IGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEG----RLNNGLDVAMAKYAAGEAVSKCANYAMRILG 343 (397)
T ss_dssp TEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTEEHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998 99999999999999999999999999999999862 1455678899999999999999999999999
Q ss_pred cccccCcCchHHhhhcccccccccccHHHHHHHhh-c
Q 011790 440 GQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVL-L 475 (477)
Q Consensus 440 g~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va-~ 475 (477)
|.||+.+++++|+|||+++..+++|++++++..|+ |
T Consensus 344 g~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ 380 (397)
T 3mpi_A 344 AYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALD 380 (397)
T ss_dssp GGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHH
T ss_pred CeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5
No 25
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2.9e-63 Score=510.29 Aligned_cols=377 Identities=16% Similarity=0.162 Sum_probs=332.8
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHH------------------HHHHHHHHH
Q 011790 45 LKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQRE------------------MTMKRISYL 106 (477)
Q Consensus 45 ~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------------~~~~~~~~l 106 (477)
|..|++.+++++.++++.+++|++++ +.|.. .+.++.+. +|.++|++|
T Consensus 2 ~~~M~~~~~~~~~~l~~~~r~~~~~~-------------~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 67 (415)
T 4hr3_A 2 PGSMDFAPSARAAELIAAVREFIDAE-------------VMPVE-RAVLAHHDELLGARAGTTAELWHVPPELDSLKAKA 67 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHT-------------HHHHH-HHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHh-------------CCccH-HHHhhhccccccccccccccccCcchhHHHHHHHH
Confidence 34588889999999999999999984 44433 33444442 889999999
Q ss_pred HHcCccccccccccch---HHHHHHHHHHHHhcccccchhhHh-hhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEE
Q 011790 107 LERNVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIG-VHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFA 182 (477)
Q Consensus 107 ~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~-~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a 182 (477)
.+.||+++.+|+++|| ++.+.+.++|++++.|.+..+... .+...+...|..+|+++|+++|||++.+|++++|++
T Consensus 68 ~e~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a 147 (415)
T 4hr3_A 68 RAAGLWNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFC 147 (415)
T ss_dssp HHTTCSSTTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEE
T ss_pred HhCCCcCcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEE
Confidence 9999999999999988 889999999999998855433222 222223467899999999999999999999999999
Q ss_pred ccCCC-CCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCc--cccccEEEEEEEeeeCC-CcCceEEEEEEeeCCC
Q 011790 183 MTELG-HGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGA--ANHATHTIVFSQLEING-KNQGVHAFICQIRDAA 258 (477)
Q Consensus 183 ~tE~~-~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a--~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~ 258 (477)
+|||+ +|||+..++|+|++++ |||+|| |+|+||||+ +. |||++|+|+++++. +.+++++|+||.+
T Consensus 148 ~tEp~~~gsd~~~~~t~A~~~g--~g~~ln-----G~K~~is~a~~~~-Ad~~~v~a~~~~~~~~~~g~~~flV~~~--- 216 (415)
T 4hr3_A 148 MTEPDVASSDATNMAATAVVEG--DEVVIN-----GRKWWSTGVGHPD-CKVIIFMGLTDPNAHRYARHSMVLVPMD--- 216 (415)
T ss_dssp CCCTTSCTTSGGGCCCEEEEET--TEEEEE-----EEEEEEETTTSTT-EEEEEEEEECCTTSCTTSSEEEEEEETT---
T ss_pred EcCCCCCCCchhhCeeEEEEEC--CEEEEe-----eEEeeECCCCCCC-CCEEEEEEEeCCCCCCCCceEEEEEEcC---
Confidence 99999 9999999999999986 899999 999999999 44 99999999987543 3468999999975
Q ss_pred CCCCCCeEEccCCCccccCccc--ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHH
Q 011790 259 GNICPNIRIADCGHKIGLNGVD--NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAG 336 (477)
Q Consensus 259 ~~~~pGv~i~~~~~~~Gl~g~~--~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa 336 (477)
.|||++.+.|+++|+++++ +++|.|+||+||++++|+. ++.++...+..+..+|+.+++
T Consensus 217 ---~pGv~v~~~~~~~g~r~~~~~~~~v~fddv~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa 277 (415)
T 4hr3_A 217 ---TPGITVERMLPTMGFYDEPGGHGVVSFDNVRLPADAFIAG----------------PGKGFEIAQGRLGPGRVHHAM 277 (415)
T ss_dssp ---STTEEEEEECCBTTBCCTTTCEEEEEEEEEEEEGGGBSSC----------------TTCHHHHHHHHCSHHHHHHHH
T ss_pred ---CCceEecCCCCccccCCCCCCeeEEEEccEEECHHHcCCC----------------CCchHHHHHHHHhHHHHHHHH
Confidence 6999999999999999987 9999999999999999996 678999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Q 011790 337 SSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVS 416 (477)
Q Consensus 337 ~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (477)
.++|+++++++.+++|+++|+|||+| |+++|.+|++|++|.+.+++++++++++++.++.. ........+
T Consensus 278 ~~~G~a~~al~~a~~~a~~R~~fg~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~---~~~~~~~~~ 347 (415)
T 4hr3_A 278 RLIGLAEVALEHACRRGLDRTAFGKP-------LVNLGGNRERIADARIAINQTRLLVLHAAWLLDTV---GIMGALSAV 347 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEETTEE-------GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCc-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCchHHHH
Confidence 99999999999999999999999998 99999999999999999999999999999999862 124566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 417 SAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 417 ~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
+++|+++++.+.++++.|+|+|||.||+.+++++|+|||+++..+++|++++++..|++
T Consensus 348 ~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~ 406 (415)
T 4hr3_A 348 SEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVAR 406 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986
No 26
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=1.1e-62 Score=502.37 Aligned_cols=369 Identities=20% Similarity=0.243 Sum_probs=333.4
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011790 47 EMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 47 ~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
.|++.+++|+.++++.+++|++++ +.|.. .+.++.+.+|.+.|++|.+.||+++.+ +++|| +
T Consensus 9 ~m~~~~~~e~~~l~~~~r~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~ 73 (392)
T 1siq_A 9 VLEEQLTTDEILIRDTFRTYCQER-------------LMPRI-LLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVS 73 (392)
T ss_dssp CGGGGSCHHHHHHHHHHHHHHHHH-------------THHHH-HHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHh-------------cCcch-HHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCC
Confidence 477788999999999999999873 44433 345666778999999999999999999 99887 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011790 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
+.+.+.+.|++++.|+++++.+.+|..++...|..+|+++|+++|+|++.+|++++|+++|||++|||+.+++|+|++++
T Consensus 74 ~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~ 153 (392)
T 1siq_A 74 SVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNS 153 (392)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeC
Confidence 88999999999999999988777776566778899999999999999999999999999999999999999999999983
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011790 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
++|+|+|| |+|+||||+.. |||++|+|++++ .++++|+||.+ .|||++.+.|+++|++++++++
T Consensus 154 ~~~g~~ln-----G~K~~vs~~~~-Ad~~~v~a~~~~----g~~~~flV~~~------~pGv~v~~~~~~~G~~~~~~~~ 217 (392)
T 1siq_A 154 SNKSYTLN-----GTKTWITNSPM-ADLFVVWARCED----GCIRGFLLEKG------MRGLSAPRIQGKFSLRASATGM 217 (392)
T ss_dssp TTTEEEEE-----EEEEEEETGGG-CSEEEEEEEETT----SCEEEEEEETT------CTTEECCBCCCCSSSTTSCEEE
T ss_pred CCCEEEEE-----EEEEeecCCcc-cCEEEEEEEECC----CCEEEEEEeCC------CCCeEeccccccccccCCceEE
Confidence 34899999 99999999997 999999999842 24899999975 6999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011790 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
|.|+||+||++++|+. + .|+...+..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 218 v~fd~v~Vp~~~~lg~----------------~-~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~- 279 (392)
T 1siq_A 218 IIMDGVEVPEENVLPG----------------A-SSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVP- 279 (392)
T ss_dssp EEEEEEEEEGGGBCTT----------------C-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE-
T ss_pred EEEccEEECHHHcCCc----------------c-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcc-
Confidence 9999999999999984 2 345566778888999999999999999999999999999999998
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011790 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ......++++|.++++.+.++++.|+|+|||.||
T Consensus 280 ------i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~ 348 (392)
T 1siq_A 280 ------LARNQLIQKKLADMLTEITLGLHACLQLGRLKDQD-----KAAPEMVSLLKRNNCGKALDIARQARDMLGGNGI 348 (392)
T ss_dssp ------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999998863 2345578999999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
+.+++++|+|||+++..+++|++++++..+++
T Consensus 349 ~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~ 380 (392)
T 1siq_A 349 SDEYHVIRHAMNLEAVNTYEGTHDIHALILGR 380 (392)
T ss_dssp SGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cCCCcHHHHHhhCcCCeeecCcHHHHHHHHHH
Confidence 99999999999999999999999999999986
No 27
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.2e-63 Score=499.50 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=315.9
Q ss_pred HHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHHhccc
Q 011790 62 WLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVTGIFD 138 (477)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~ 138 (477)
.+++|+++ ++.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+.++|++++.|
T Consensus 3 ~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 68 (366)
T 1r2j_A 3 ERDALLTD-------------LVGDRA-AEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLC 68 (366)
T ss_dssp CCHHHHHH-------------HHSSCH-HHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-------------hccccH-HHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHC
Confidence 45677776 355543 456777789999999999999999999999987 7899999999999999
Q ss_pred ccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCce
Q 011790 139 HSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQ 218 (477)
Q Consensus 139 ~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~ 218 (477)
+++++.+++|..++...|. +|+++|+++|||++.+|+ ++|+++|||++|||+..++|+|++++ |+|+|| |+
T Consensus 69 ~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~ln-----G~ 139 (366)
T 1r2j_A 69 SSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDG--DTAVVD-----GH 139 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEET--TEEEEE-----EE
T ss_pred hHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeC--CEEEEE-----EE
Confidence 9999988888556778888 999999999999999999 99999999999999999999999986 899999 99
Q ss_pred eeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccC
Q 011790 219 KYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLN 298 (477)
Q Consensus 219 K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~ 298 (477)
|.||||+.. |||++|+|++++ + |+++|+||.+ .|||++.+.|+++|++++++++|.|+||+||++++|+
T Consensus 140 K~~~s~~~~-Ad~~~v~a~~~~--~--g~~~flV~~~------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg 208 (366)
T 1r2j_A 140 KVWTTAAAY-ADHLVVFGLQED--G--SGAVVVVPAD------TPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLA 208 (366)
T ss_dssp EEEETTTTT-CSEEEEEEBCSS--S--CCEEEEEETT------STTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCT
T ss_pred EecccCCcc-cCEEEEEEEeCC--C--ceEEEEEECC------CCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCC
Confidence 999999997 999999999743 1 7899999975 6999999999999999999999999999999999998
Q ss_pred CCCCcCCCCcccccCCCcchHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHH
Q 011790 299 SVADVSPDGQYLSSIKDPDQRFAAF-MAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQ 377 (477)
Q Consensus 299 ~~~~v~~~g~~~~~~~~~~~~~~~~-~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q 377 (477)
. ++.+|... +..+..+|+.+++.++|+++++++.+++|+++|+|||+| |+++|.+|
T Consensus 209 ~----------------~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~-------i~~~q~v~ 265 (366)
T 1r2j_A 209 G----------------SGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRP-------LGDHQLVA 265 (366)
T ss_dssp T----------------TTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEE-------GGGSHHHH
T ss_pred C----------------CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCc-------hhhhHHHH
Confidence 5 55667666 777889999999999999999999999999999999998 99999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhccc
Q 011790 378 RRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFD 457 (477)
Q Consensus 378 ~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~ 457 (477)
++|++|.+++++++++++++++.++.. .......++++|+++++.+.++++.++|++||.||+.+++++|+|||++
T Consensus 266 ~~la~~~~~~~~ar~~~~~aa~~~~~g----~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~ 341 (366)
T 1r2j_A 266 GHIADLWTAEQIAARVCEYASDHWDEG----SPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAK 341 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhcc
Confidence 999999999999999999999988752 1344567899999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHhhc
Q 011790 458 VQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 458 ~~~~~~G~~~vl~~~va~ 475 (477)
+..+++|++++++..+++
T Consensus 342 ~~~~~~G~~~~~~~~ia~ 359 (366)
T 1r2j_A 342 LMEIIEGSSEMCRVMLAQ 359 (366)
T ss_dssp HHHHSSSCHHHHHHHHHH
T ss_pred CceecCCHHHHHHHHHHH
Confidence 999999999999999986
No 28
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=6.8e-62 Score=519.36 Aligned_cols=362 Identities=20% Similarity=0.289 Sum_probs=331.2
Q ss_pred HHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHH
Q 011790 58 QERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVT 134 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~l 134 (477)
++++.+++|+++. +.| ..+|+.+.+|.+.|+.|.+.||+++.+|++||| +....+.+.|++
T Consensus 56 ~l~~~~~~~~~~~-------------~~~---~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l 119 (607)
T 2uxw_A 56 ELVEPVSRFFEEV-------------NDP---AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIV 119 (607)
T ss_dssp HHHHHHHHHHHHT-------------CCH---HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-------------cCH---HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 4789999999884 223 235666778999999999999999999999998 788899999999
Q ss_pred hcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCC
Q 011790 135 GIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPC 214 (477)
Q Consensus 135 a~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~ 214 (477)
+++|+++++.+++|.+++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|++++++++|+||
T Consensus 120 ~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln--- 196 (607)
T 2uxw_A 120 GMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN--- 196 (607)
T ss_dssp HHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE---
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE---
Confidence 99999999988888656677899999999999999999999999999999999999999999999998655699999
Q ss_pred CCceeeeecCccccccEEEEEEEeeeCC---C--cCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecce
Q 011790 215 ESAQKYWIGGAANHATHTIVFSQLEING---K--NQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNV 289 (477)
Q Consensus 215 ~~G~K~~is~a~~~A~~~~v~A~~~~~~---~--~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v 289 (477)
|+|+||||+.. ||+++|+|++.+.+ + .+|+++|+||.+ .|||++.+.|+++|+++++++.|.|+||
T Consensus 197 --G~K~~is~~~~-Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~------~~Gv~v~~~~~~~G~rg~~t~~v~fddv 267 (607)
T 2uxw_A 197 --GSKLWISNGGL-ADIFTVFAKTPVTDPATGAVKEKITAFVVERG------FGGITHGPPEKKMGIKASNTAEVFFDGV 267 (607)
T ss_dssp --EEEEEEETTTT-CSEEEEEEEEEEECTTTCCEEEEEEEEEEEGG------GSSEEECCCCCCSSCTTSCEEEEEEEEE
T ss_pred --eEEEeecCCcc-cCEEEEEEEecCCCcccCCCCCceEEEEEeCC------CCCeEEecCccccCCCCCCeeEEEeccE
Confidence 99999999997 99999999986422 1 458999999975 6999999999999999999999999999
Q ss_pred ecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccc
Q 011790 290 RIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVL 369 (477)
Q Consensus 290 ~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~ 369 (477)
+||.+++||. ++.|+..++..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 268 ~VP~~~llG~----------------~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~p------- 324 (607)
T 2uxw_A 268 RVPSENVLGE----------------VGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK------- 324 (607)
T ss_dssp EEEGGGEESS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE-------
T ss_pred EecHHHhcCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc-------
Confidence 9999999996 77899999999999999999999999999999999999999999988
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCch
Q 011790 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRV 449 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l 449 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. ..+....++++|+++++.+.++++.|+|+|||.||..++++
T Consensus 325 i~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~~----~~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l 400 (607)
T 2uxw_A 325 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQG----ATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 400 (607)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSH
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHH
Confidence 99999999999999999999999999999988852 23456788999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccHHHHHHHhh
Q 011790 450 GHLKGEFDVQLTFEGDNNVLMQQVL 474 (477)
Q Consensus 450 ~r~~rda~~~~~~~G~~~vl~~~va 474 (477)
+|+|||+++..+++|+|++++..|+
T Consensus 401 ~r~~Rda~~~~i~eGt~~i~~~~ia 425 (607)
T 2uxw_A 401 ERVLRDLRIFRIFEGTNDILRLFVA 425 (607)
T ss_dssp HHHHHHHGGGGTSSSCHHHHHHHHH
T ss_pred HHHHHhcccceeeCChHHHHHHHHH
Confidence 9999999999999999999998875
No 29
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-61 Score=499.78 Aligned_cols=380 Identities=16% Similarity=0.178 Sum_probs=324.7
Q ss_pred CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCccc--CCHHHH----H------HHHHHHHHHHHHcC
Q 011790 43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYN--QTMEQQ----R------EMTMKRISYLLERN 110 (477)
Q Consensus 43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~----~------~~~~~~~~~l~~~G 110 (477)
++...|++.+++|+.++++.+++|++++ +.|... ...++. . .++.++|++|.+.|
T Consensus 14 ~~~~~m~~~~~~e~~~l~~~~r~f~~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 80 (428)
T 2wbi_A 14 IDTTGQLFVQTRKGQEVLIKVKHFMKQH-------------ILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEG 80 (428)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHT-------------HHHHHHHHHC----------CCSCCHHHHHHHHHHHHTT
T ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHhh-------------CCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCC
Confidence 5667799889999999999999999984 333211 022211 1 47889999999999
Q ss_pred ccccccccccch-HHHHHHHHHHHHhccccc-chhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCC-
Q 011790 111 VFEGWLTAKGAE-AELRKLALLEVTGIFDHS-LAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELG- 187 (477)
Q Consensus 111 l~~~~~p~~~Gg-~~~~~~~~~e~la~~~~s-~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~- 187 (477)
|+++.+|+ +.| ++.+.+.+.|+++++|.+ .++....+..++...|..+|+++|+++|||++.+|++++|+++|||+
T Consensus 81 l~~l~~P~-G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~ 159 (428)
T 2wbi_A 81 LWNLFLPA-VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDV 159 (428)
T ss_dssp CCSTTCHH-HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTS
T ss_pred CCeecCCC-CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCc
Confidence 99999999 323 788899999999999843 33322222224566788999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccc-cccEEEEEEEeeeCC--CcCceEEEEEEeeCCCCCCCCC
Q 011790 188 HGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAAN-HATHTIVFSQLEING--KNQGVHAFICQIRDAAGNICPN 264 (477)
Q Consensus 188 ~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~-~A~~~~v~A~~~~~~--~~~g~~~flV~~~~~~~~~~pG 264 (477)
+|||+.+++|+|++++ |||+|| |+|+||||+.+ .|||++|+|++++++ +..|+++|+||.+ .||
T Consensus 160 aGsd~~~~~t~A~~~~--~g~~ln-----G~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~------~pG 226 (428)
T 2wbi_A 160 ASSDATNIECSIQRDE--DSYVIN-----GKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMN------TPG 226 (428)
T ss_dssp CTTSGGGCCCEEEEET--TEEEEE-----EEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETT------STT
T ss_pred CCCCcccceEEEEEeC--CEEEEE-----eEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECC------CCc
Confidence 9999999999999986 899999 99999999961 299999999986542 3457999999975 799
Q ss_pred eEEccCCCccccCccc---ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHH
Q 011790 265 IRIADCGHKIGLNGVD---NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYK 341 (477)
Q Consensus 265 v~i~~~~~~~Gl~g~~---~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~ 341 (477)
|++.+.|+++|+++++ +++|.|+||+||++++|+. ++.||...+..+..+|+.+++.++|+
T Consensus 227 v~v~~~~~~~G~~~~~~~~~~~v~fddv~VP~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~ 290 (428)
T 2wbi_A 227 VKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILG----------------EGRGFEISQGRLGPGRIHHCMRTVGL 290 (428)
T ss_dssp EEEEEECCBTTBCCGGGCCEEEEEEEEEEEEGGGBCSC----------------TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCccccCCCCCCCeEEEEeCceEECHHHhcCC----------------ccchHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999995 9999999999999999996 67889888888999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 011790 342 AKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKA 421 (477)
Q Consensus 342 a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~ 421 (477)
++++++.+++|+++|+|||+| |+++|.+|++|++|.+.+++++++++++++.++.. ........++++|+
T Consensus 291 a~~al~~a~~ya~~R~~fG~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~---g~~~~~~~~~~aK~ 360 (428)
T 2wbi_A 291 AERALQIMCERATQRIAFKKK-------LYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTL---GSAGAKKEIAMIKV 360 (428)
T ss_dssp HHHHHHHHHHHHHHCEETTEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccCCC-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcchHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999999998751 01345678899999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 422 ILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 422 ~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
++++.+.++++.|+|+|||.||+.+++++|+|||+++..+++|++++++..|++
T Consensus 361 ~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~ 414 (428)
T 2wbi_A 361 AAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIAT 414 (428)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986
No 30
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=1.7e-61 Score=500.50 Aligned_cols=380 Identities=14% Similarity=0.149 Sum_probs=331.4
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcc---cCCHHHHH-HHH--HHHHHHHHHcCccccccccccc
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDY---NQTMEQQR-EMT--MKRISYLLERNVFEGWLTAKGA 121 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~-~~~--~~~~~~l~~~Gl~~~~~p~~~G 121 (477)
|++.+++|++++++.+++|++++ +.|.. ....++.+ .+| .++|++|.+.||+++.+|+++|
T Consensus 3 m~~~~~~e~~~l~~~~r~f~~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~G 69 (438)
T 3mkh_A 3 IDFHLSASQKGTYQAARSLARNL-------------LMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHG 69 (438)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHT-------------HHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-------------cCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccC
Confidence 56678889999999999999994 33432 11112234 677 8999999999999999999998
Q ss_pred h---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhccc--ceEEEEEccCCCCCC-----C
Q 011790 122 E---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENY--VVLGCFAMTELGHGS-----N 191 (477)
Q Consensus 122 g---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g--~~~~~~a~tE~~~Gs-----d 191 (477)
| ++.+.+.++|++++.|+++++.+..| .++...|..+|+++ +++||+++.+| +.++|+++|||++|| |
T Consensus 70 G~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd 147 (438)
T 3mkh_A 70 GTGGTLIESAILVEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKG 147 (438)
T ss_dssp CCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTT
T ss_pred CCCCCHHHHHHHHHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccc
Confidence 8 78999999999999999998877665 36667788899999 89999999986 589999999999998 6
Q ss_pred CCCCeeEEEEeCCCCeEEEecCCCCceeeeecCcc-----ccccEEEEEEEeee------CCCcCceEEEEEEeeCCCCC
Q 011790 192 VRGIETVTTYDANTGEFIINTPCESAQKYWIGGAA-----NHATHTIVFSQLEI------NGKNQGVHAFICQIRDAAGN 260 (477)
Q Consensus 192 ~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~-----~~A~~~~v~A~~~~------~~~~~g~~~flV~~~~~~~~ 260 (477)
+.+++|+|++++ |+|+|| |+|+||||+. . ||+++|+|++.. .++..++++|+||.++.+ .
T Consensus 148 ~~~~~t~A~~~g--~g~~ln-----G~K~~is~a~~~~~~~-Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~-~ 218 (438)
T 3mkh_A 148 APGFQTTARLEG--DEWVIN-----GEKMWATNCAGWDFKG-CDLACVVCRDATTPLEEGQDPENKVMIILVTRADLD-R 218 (438)
T ss_dssp SCCCSCEEEEET--TEEEEE-----EEECSCTTTTCTTSSC-CSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHH-H
T ss_pred cccceeEEEEeC--CEEEEE-----eEEEEecCCCcccccc-CcEEEEEEEecCcccCcccCCCCceEEEEEecCccc-c
Confidence 899999999986 899999 9999999997 5 999999999864 123457999999965200 0
Q ss_pred CCCC-eEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHH
Q 011790 261 ICPN-IRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSV 339 (477)
Q Consensus 261 ~~pG-v~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~ 339 (477)
..|| |++.+.|+++|++++++++|.|+||+||++++|+. ++.|+..++..+..+|+.+++.++
T Consensus 219 ~~pG~v~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~l 282 (438)
T 3mkh_A 219 NGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCP----------------AGQGAKVAFGAFDGSAVLVGAMGV 282 (438)
T ss_dssp HCTTSEEEEECCCCSSCTTCCCCEEEEEEEEEEGGGEEEC----------------TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEecCcCCCcCCcCCCceEEEECcEEECHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 0388 99999999999999999999999999999999996 778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccC-CCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 011790 340 YKAKIGLAIAIRYSLSRRAFS-ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSA 418 (477)
Q Consensus 340 G~a~~al~~a~~ya~~R~qfg-~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (477)
|+++++++.+++|+++|+||| +| |+++|.+|++|++|.+++++++++++++++.++..... .......+++
T Consensus 283 G~a~~al~~a~~ya~~R~~~g~~p-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~-~~~~~~~~~~ 354 (438)
T 3mkh_A 283 GLMRAAFDAALKFAKEDNRGGAVP-------LLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGD-YDARRELALA 354 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCSSC-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcEeCCCee-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-chhHHHHHHH
Confidence 999999999999999999999 88 99999999999999999999999999999999874210 1123345778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccH-HHHHHHhhc
Q 011790 419 FKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDN-NVLMQQVLL 475 (477)
Q Consensus 419 ~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~-~vl~~~va~ 475 (477)
+|+++++.+.++++.|+|+|||.||+.+++++|+|||+++..+++|++ ++++++|++
T Consensus 355 aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r 412 (438)
T 3mkh_A 355 AKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQ 412 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999988876
No 31
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=2.4e-60 Score=491.95 Aligned_cols=375 Identities=13% Similarity=0.111 Sum_probs=330.6
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHH----HHHHHH--HHHHHHHHHcCccccccccccc
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTME----QQREMT--MKRISYLLERNVFEGWLTAKGA 121 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~--~~~~~~l~~~Gl~~~~~p~~~G 121 (477)
|++.+++|+.++++.+++|++++ +.|.. .+++ ..+.+| .++|++|.+.||+++.+|+++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~-------------~~p~~-~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~G 67 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTV-------------LTKAS-AEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLG 67 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHT-------------GGGHH-HHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-------------CChhH-HHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhC
Confidence 55667888999999999999984 44432 1111 235677 8999999999999999999998
Q ss_pred h---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhc--ccceEEEEEccCCCCCC-----C
Q 011790 122 E---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTE--NYVVLGCFAMTELGHGS-----N 191 (477)
Q Consensus 122 g---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~--~g~~~~~~a~tE~~~Gs-----d 191 (477)
| ++.+.+.++|++++.|+++++.+.+|. ++...|..+|+++|+++|||++. +|++++|+++|||++|| |
T Consensus 68 G~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd 146 (439)
T 2c12_A 68 GTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKG 146 (439)
T ss_dssp CCBCCHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTT
T ss_pred CCCCCHHHHHHHHHHHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccc
Confidence 7 788999999999999999998887774 66778899999999999999998 69999999999999998 5
Q ss_pred CCCCeeEEEEeCCCCeEEEecCCCCceeeeecCcc-----ccccEEEEEEEe-e----eC----CCcCceEEEEEEeeCC
Q 011790 192 VRGIETVTTYDANTGEFIINTPCESAQKYWIGGAA-----NHATHTIVFSQL-E----IN----GKNQGVHAFICQIRDA 257 (477)
Q Consensus 192 ~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~-----~~A~~~~v~A~~-~----~~----~~~~g~~~flV~~~~~ 257 (477)
+.+++|+|++++ |||+|| |+|+||||+. . |||++|+|++ + ++ ++.+|+++|+||.+
T Consensus 147 ~~~~~t~A~~~~--~g~~ln-----G~K~~is~~~~~~~~~-Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~-- 216 (439)
T 2c12_A 147 GPGLQTTARKVG--NEWVIS-----GEKLWPSNSGGWDYKG-ADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRE-- 216 (439)
T ss_dssp SCCCSCEEEEET--TEEEEE-----EEEECCTTTTTTTSSC-CSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHH--
T ss_pred cccceeEEEEcC--CEEEEE-----eEEEeecCCCcccccc-CcEEEEEEEcCCcccCccccccCCCCceEEEEEECC--
Confidence 888999999986 899999 9999999997 6 9999999998 5 22 34468999999976
Q ss_pred CCCCCC------CeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHH-HHHhHHHHH
Q 011790 258 AGNICP------NIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFA-AFMAPLTSG 330 (477)
Q Consensus 258 ~~~~~p------Gv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~-~~~~~l~~~ 330 (477)
.| ||++.+.|+++|++++++++|.|+||+||++++|+. ++.|+. ..+..+..+
T Consensus 217 ----~pGv~~~~Gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~----------------~~~g~~~~~~~~l~~~ 276 (439)
T 2c12_A 217 ----TIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCT----------------PGLKAQGLVETAFAMS 276 (439)
T ss_dssp ----HHHTSCGGGEEEEECCCBSSCTTCCCCEEEEEEEEEEGGGBCSC----------------TTHHHHHHHHHHHHHH
T ss_pred ----CCcccCCCceEeCCcccccccCCCCceEEEEccEEecHHHcCCC----------------CCccHHHHHHHHHHHH
Confidence 46 899999999999999999999999999999999996 678888 888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 011790 331 RVIIAGSSVYKAKIGLAIAIRYSLS-RRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN 409 (477)
Q Consensus 331 r~~~aa~~~G~a~~al~~a~~ya~~-R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~ 409 (477)
|+.+++.++|+++++++.+++|+++ |.+||+| |+++|.+|++|++|.+.+++++++++++++.++.... ..
T Consensus 277 r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~-~~ 348 (439)
T 2c12_A 277 AALVGAMAIGTARAAFEEALVFAKSDTRGGSKH-------IIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEAL-EW 348 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSC-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhceeeCCee-------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cc
Confidence 9999999999999999999999996 7889998 9999999999999999999999999999999875311 01
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccH-HHHHHHhhc
Q 011790 410 KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDN-NVLMQQVLL 475 (477)
Q Consensus 410 ~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~-~vl~~~va~ 475 (477)
......++++|+++++.+.++++.|+|+|||.||+.+++++|+|||+++..+++|++ ++++..+++
T Consensus 349 ~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~ 415 (439)
T 2c12_A 349 KVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQR 415 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHH
Confidence 123456889999999999999999999999999999999999999999999999988 688888765
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=9.7e-58 Score=466.33 Aligned_cols=369 Identities=13% Similarity=0.079 Sum_probs=314.0
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch----H
Q 011790 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE----A 123 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg----~ 123 (477)
|+..|++|+.++++.+++|+++ +.|.. .++|+.+.+|.+.|++|.+.||+++.+|+++|| +
T Consensus 5 ~~~~lt~e~~~~~~~~r~~~~~--------------~~~~a-~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~ 69 (395)
T 3mxl_A 5 LRAPLTPAGRTVVDLLAGVIPR--------------ISAEA-ADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTR 69 (395)
T ss_dssp SSSCCSHHHHHHHHHHTTTHHH--------------HHHHH-HHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCC
T ss_pred cccCCCHHHHHHHHHHHHHHHH--------------Hhhch-HHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcC
Confidence 4556788899999999999964 33432 467888889999999999999999999999887 4
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHH--hccCCHHHH---HHhhhhhcccceEEEEEccCCCCCCCCCCCeeE
Q 011790 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAI--QFFGTQRHH---EKWLRDTENYVVLGCFAMTELGHGSNVRGIETV 198 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i--~~~gt~~q~---~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~ 198 (477)
+.+.+.++|++++.|+++++.+.+|..++...+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..++|+
T Consensus 70 ~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t~ 147 (395)
T 3mxl_A 70 LYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHSD 147 (395)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEEC
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEEe
Confidence 678899999999999999998888865554443 356999999 9999999999999999999998763 233332
Q ss_pred EEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCc
Q 011790 199 TTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278 (477)
Q Consensus 199 A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g 278 (477)
+ +|||+|| |+|+||||+.. |||++|+|+++++++.+++++|+||.+ .|||++.+.|+++|+++
T Consensus 148 ---~--~~g~~ln-----G~K~~is~a~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~r~ 210 (395)
T 3mxl_A 148 ---G--AGGWLLS-----GRKVLVSMAPI-ATHFFVHAQRRDDDGSVFLAVPVVHRD------APGLTVLDNWDGLGMRA 210 (395)
T ss_dssp ---S--SSCEEEE-----EEEEEETTGGG-CSEECCCEEEECTTSCEEEECCCEETT------CTTEEEECCCCBSSCTT
T ss_pred ---c--CCEEEEe-----eEEEEecCccc-cCEEEEEEEeCCCCCCCceEEEEEECC------CCceEeCCCchhcCCCC
Confidence 3 4899999 99999999997 999999999987656668999999976 69999999999999999
Q ss_pred ccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011790 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRA 358 (477)
Q Consensus 279 ~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~q 358 (477)
+++++|.|+||+||++++|+... ++.++...+..+..+|+.+++.++|+++++++.+++|++
T Consensus 211 ~~~~~v~f~~v~Vp~~~~lg~~~--------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~---- 272 (395)
T 3mxl_A 211 SGTLEVVFDRCPVRADELLERGP--------------VGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA---- 272 (395)
T ss_dssp SCCEEEEEEEEEECGGGCCEEEE--------------SSCCCTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCcceEEEcceEcCHHHhcCCCC--------------CCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 99999999999999999998210 233333344445568999999999999999999999998
Q ss_pred cCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCC----C-C--chhhHHHHHHHHHHHHHHHHHHH
Q 011790 359 FSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTP----Q-S--NKTIHVVSSAFKAILTWHNMRTL 431 (477)
Q Consensus 359 fg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~----~-~--~~~~~~~~~~~K~~a~~~a~~~~ 431 (477)
|+| |.++|.+|++|++|.+++++++++++++++.++.... + . .......++++|.++++.+.+++
T Consensus 273 -~r~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~ 344 (395)
T 3mxl_A 273 -GRG-------GEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVV 344 (395)
T ss_dssp -TTC-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 346 9999999999999999999999999999998875210 0 0 11234677889999999999999
Q ss_pred HHHHHHhccccccCcCchHHhhhcccccc-cccccHHHHHHHhhcC
Q 011790 432 QECREACGGQGLKTENRVGHLKGEFDVQL-TFEGDNNVLMQQVLLS 476 (477)
Q Consensus 432 ~~~~~~~Gg~G~~~~~~l~r~~rda~~~~-~~~G~~~vl~~~va~~ 476 (477)
+.|+|+|||.||+.+++++|+|||+++.. +++|++++++++|+|.
T Consensus 345 ~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~ 390 (395)
T 3mxl_A 345 DDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQ 390 (395)
T ss_dssp HHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHH
T ss_pred HHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999873
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=1.2e-56 Score=464.25 Aligned_cols=372 Identities=12% Similarity=0.078 Sum_probs=313.9
Q ss_pred CHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch-
Q 011790 44 DLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE- 122 (477)
Q Consensus 44 ~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg- 122 (477)
++..|++.+++++.++++.+++|+++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus 12 ~~~~m~~~lt~e~~~l~~~~r~~~~~--------------~~~~a-~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~ 76 (439)
T 3m9v_A 12 STTGLYAPVTPAGRVLLDRLAAHLPR--------------IRSTA-AEHDRDGTFPTDTFDALRKDGLMGATVPAELGGL 76 (439)
T ss_dssp CCSTTSSCSSHHHHHHHHHHHTTHHH--------------HHHHH-HHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--------------HhhhH-HHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCC
Confidence 55568999999999999999999964 33432 457788889999999999999999999999986
Q ss_pred ---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHH--hccCCHHH---HHHhhhhhcccceEEEEEccCCCCCCCCCC
Q 011790 123 ---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAI--QFFGTQRH---HEKWLRDTENYVVLGCFAMTELGHGSNVRG 194 (477)
Q Consensus 123 ---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i--~~~gt~~q---~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~ 194 (477)
++.+++.++|++++.|+++++.+++|...+...+ ..+|+++| |++||+++.+|++++|+++|||+++ +..
T Consensus 77 gl~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~ 154 (439)
T 3m9v_A 77 GVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTT 154 (439)
T ss_dssp CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCE
T ss_pred CCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCc
Confidence 4678999999999999999998888865544443 46699999 9999999999999999999999854 333
Q ss_pred CeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCcc
Q 011790 195 IETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKI 274 (477)
Q Consensus 195 ~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~ 274 (477)
++|+ + +|+|+|| |+|+||||+.+ |||++|+|+++++++.+++++|+||.+ .|||++.+.|+++
T Consensus 155 ~~t~---~--~~g~vln-----G~K~~~s~a~~-Ad~~~v~art~~~~~~~g~~~flVp~~------~pGv~i~~~~~~~ 217 (439)
T 3m9v_A 155 LRPD---G--AGGWLLS-----GRKTLVSMAPV-GTHFVINARTDGTDGPPRLASPVVTRD------TPGFTVLDNWDGL 217 (439)
T ss_dssp EEEC---S--SSCEEEE-----EEEEEETTGGG-CSEEEECEEECC--CCCCEEEEEEETT------CTTEEECCCCCCS
T ss_pred eeec---c--CCEEEEE-----eEEEeecCccc-cCEEEEEEEecCCCCCceeEEEEEECC------CCCeEECCCcccC
Confidence 4333 3 4899999 99999999997 999999999976655678999999976 6999999999999
Q ss_pred ccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011790 275 GLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSL 354 (477)
Q Consensus 275 Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~ 354 (477)
|++++++++|.|+||+||++++|+... ++.++...+..+..+|+.+++.++|+++++++.+++|++
T Consensus 218 G~~~~~~~~v~fddv~VP~~~~lg~~~--------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~ 283 (439)
T 3m9v_A 218 GMRASGTVDIVFDDCPIPADHVLMRDP--------------VGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE 283 (439)
T ss_dssp SCTTSCCEEEEEEEEEECGGGEEECCC----------------CCCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCceeEEEeeeEcCHHHccCCCC--------------CCchHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998310 233333333334558999999999999999999999998
Q ss_pred hccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CC----chhhHHHHHHHHHHHHHHH
Q 011790 355 SRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTP---QS----NKTIHVVSSAFKAILTWHN 427 (477)
Q Consensus 355 ~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~---~~----~~~~~~~~~~~K~~a~~~a 427 (477)
. +| |.++|.+|++|+++.+++++++++++++++.++.... .. .......++++|+++++.+
T Consensus 284 ~-----r~-------i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~ak~~a~~~a 351 (439)
T 3m9v_A 284 R-----RP-------EPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLA 351 (439)
T ss_dssp T-----CS-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 4 36 9999999999999999999999999999888764110 00 1233456778999999999
Q ss_pred HHHHHHHHHHhccccccCcCchHHhhhcccccc-cccccHHHHHHHhhc
Q 011790 428 MRTLQECREACGGQGLKTENRVGHLKGEFDVQL-TFEGDNNVLMQQVLL 475 (477)
Q Consensus 428 ~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~-~~~G~~~vl~~~va~ 475 (477)
.++++.|+|+|||.||+.+++++|+|||+++.. +++|++++.++.|++
T Consensus 352 ~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~ 400 (439)
T 3m9v_A 352 PEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSA 400 (439)
T ss_dssp HHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999988876
No 34
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=3e-56 Score=457.97 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=307.1
Q ss_pred hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011790 50 KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
+.+++++.++++.+++|+++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+
T Consensus 16 ~~~~~~~~~l~~~~r~~~~~--------------~~~~a-~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~ 80 (414)
T 2or0_A 16 NLYFQGMGRVLDRIEVVAEE--------------IRGQA-VQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPRE 80 (414)
T ss_dssp -------CHHHHHHHHTHHH--------------HHHHH-HHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHH
T ss_pred CCCCccHHHHHHHHHHHHHH--------------HHHhH-HHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHH
Confidence 34567888999999999964 23332 456777789999999999999999999999987 7899
Q ss_pred HHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCC
Q 011790 127 KLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~ 206 (477)
.+.++|++++.|+++++.+.+|. ++...|..+|+++|+++|++ +|+.++|+++| | +|+|++++ |
T Consensus 81 ~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~--~ 144 (414)
T 2or0_A 81 FAETVMGVAALDGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVD--G 144 (414)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEET--T
T ss_pred HHHHHHHHHhhChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEEC--C
Confidence 99999999999999998888774 77888999999999999999 69999999988 4 67999986 8
Q ss_pred eEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcC---ceEEEEEEeeCCCCCCCCCeEEc-cCCCccccCcccce
Q 011790 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQ---GVHAFICQIRDAAGNICPNIRIA-DCGHKIGLNGVDNG 282 (477)
Q Consensus 207 ~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~---g~~~flV~~~~~~~~~~pGv~i~-~~~~~~Gl~g~~~~ 282 (477)
||+|| |+|+||||+.. |||++|+|++.++.+.. ++++|+||. .||++. +.|+++|+++++++
T Consensus 145 g~~ln-----G~K~~is~a~~-Ad~~~v~a~~~~~~g~~~~~g~~~flV~~--------~gv~v~~~~~~~~G~r~~~~~ 210 (414)
T 2or0_A 145 GYVLK-----GRWSFSSGTDH-CQWAFLGAMVGDGEGGIATPSSLHVILPR--------TDYQIVEDTWDVIGLRGTGSK 210 (414)
T ss_dssp EEEEE-----EEEEEETTGGG-CSEEEEEEEECC-----CCCSEEEEEEEG--------GGCEEETTCCCBSSCGGGCCE
T ss_pred eEEEE-----eeEeccCCCch-hhEEEEEEEecCCCCCcccceeEEEEEEh--------hhcEEecCCCccccCcccCCC
Confidence 99999 99999999997 99999999986432333 799999994 479999 99999999999999
Q ss_pred eEEecceecCcccccCCCCCcCCCCcccccCCCcc----hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011790 283 RIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD----QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRA 358 (477)
Q Consensus 283 ~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~----~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~q 358 (477)
+|.||||+||++++|+....+ +|.+ ++ .++...+..+..+|+.+++.++|+++++++.+++|+++|+|
T Consensus 211 ~v~fd~v~VP~~~~lg~~~~~--~g~~------~g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~ 282 (414)
T 2or0_A 211 DLIVDGAFVPGYRTLNAAKVM--DGRA------QKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVA 282 (414)
T ss_dssp EEEEEEEEEEGGGEEEHHHHH--HSHH------HHHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred cEEEccEEecHHHeecccccc--ccCC------CccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999741000 0000 00 11233344567889999999999999999999999999999
Q ss_pred c-CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH----hcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011790 359 F-SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYV----NRTPQSNKTIHVVSSAFKAILTWHNMRTLQE 433 (477)
Q Consensus 359 f-g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~ 433 (477)
| |+| |+++|.+|++|++|.+.+++++++++++++.++ ... ....+....++++|+++++.+.++++.
T Consensus 283 f~G~~-------i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~g~-~~~~~~~~~~~~aK~~a~e~a~~v~~~ 354 (414)
T 2or0_A 283 ITGQK-------IKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVDAGK-EITFEERAIGRRTQIAAAWRAVRAADE 354 (414)
T ss_dssp TTSCB-------GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc-------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 988 999999999999999999999999999999998 321 112235668899999999999999999
Q ss_pred HHHHhccccccCcCchHHhhhcccccccccc-cHHHHHHHhhc
Q 011790 434 CREACGGQGLKTENRVGHLKGEFDVQLTFEG-DNNVLMQQVLL 475 (477)
Q Consensus 434 ~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G-~~~vl~~~va~ 475 (477)
|+|++||.||+.+++++|+|||+++..+++| ++++++..|++
T Consensus 355 a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~ 397 (414)
T 2or0_A 355 IFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASAL 397 (414)
T ss_dssp HHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHH
T ss_pred HHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 9999999999999999999999999999999 99999999986
No 35
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=4.9e-55 Score=446.18 Aligned_cols=362 Identities=13% Similarity=0.040 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHH
Q 011790 57 LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEV 133 (477)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~ 133 (477)
.++++.+++|+++ +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+.++|+
T Consensus 10 ~~l~~~~~~~~~~--------------~~~~~-~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 74 (394)
T 2rfq_A 10 HEVMQRLDALLPT--------------LRERA-QETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRK 74 (394)
T ss_dssp SHHHHHHHHHHHH--------------HHHTH-HHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHHhH-HHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHH
Confidence 3689999999864 33332 456777889999999999999999999999987 78999999999
Q ss_pred HhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecC
Q 011790 134 TGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTP 213 (477)
Q Consensus 134 la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp 213 (477)
+++.|+++++.+.+|. ++...|..+|+++|+++|++ +|+.++|+++| | .|+|++++ |||+||
T Consensus 75 la~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~--~g~~ln-- 136 (394)
T 2rfq_A 75 IASACGSTGWVSSIIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVD--GGYTVN-- 136 (394)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEET--TEEEEE--
T ss_pred HHhhChhHHHHHHHHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeC--CeEEEe--
Confidence 9999999998877774 67788999999999999998 68999999988 3 57999986 899999
Q ss_pred CCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCc
Q 011790 214 CESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPR 293 (477)
Q Consensus 214 ~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~ 293 (477)
|+|+||||+.+ |||++|+|+++++++.+++++|+||. +||++.+.|+++|++++++++|.|+||+||+
T Consensus 137 ---G~K~~is~a~~-Ad~~~v~a~~~~~g~~~~~~~flV~~--------~gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~ 204 (394)
T 2rfq_A 137 ---GAWAWSSGCDH-ASWAVLGGPVIKDGRPVDFVSFLIPR--------EDYRIDDVWNVVGLRGTGSNTVVVEDVFVPT 204 (394)
T ss_dssp ---EEEEEETTGGG-CSEEEEEEEEEETTEEEEEEEEEEEG--------GGCEEECCCCBSSCGGGCCEEEEEEEEEEEG
T ss_pred ---eeEeccCCCcc-cceEEEeeeecCCCCCCceeEEEEEh--------hhcEEeCCccccccccCCCCceEEcceEcCh
Confidence 99999999997 99999999985444345799999994 4799999999999999999999999999999
Q ss_pred ccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccCCCCCCCcccc
Q 011790 294 ENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRR---AFSITPNGPEVLL 370 (477)
Q Consensus 294 ~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~---qfg~~~~~~~~~i 370 (477)
+++|+..... +|.+.... ...++......+..+|+.+++.++|+++++++.+++|+++|+ |||+| |
T Consensus 205 ~~~lg~~~~~--~g~~~g~~--~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~-------i 273 (394)
T 2rfq_A 205 HRVLSFKAMS--NLTAPGLE--RNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEK-------A 273 (394)
T ss_dssp GGEEEHHHHH--TTCCGGGT--TCCCGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCG-------G
T ss_pred HHhccccccc--ccCCCCcc--cCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcc-------c
Confidence 9999741000 00000000 001122333456678999999999999999999999999999 99998 9
Q ss_pred ccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH----hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 011790 371 LDYPSHQRRLLPLLAKSYAASCAANYLKMMYV----NRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTE 446 (477)
Q Consensus 371 ~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~ 446 (477)
+++|.+|++|++|.+.+++++++++++++.++ ... ....+....++++|.++++.+.++++.|+|+|||.||+.+
T Consensus 274 ~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g~-~~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~ 352 (394)
T 2rfq_A 274 KDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGE-EVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANG 352 (394)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcC
Confidence 99999999999999999999999999999998 321 1122456678999999999999999999999999999999
Q ss_pred CchHHhhhcccccccccc-cHHHHHHHhhc
Q 011790 447 NRVGHLKGEFDVQLTFEG-DNNVLMQQVLL 475 (477)
Q Consensus 447 ~~l~r~~rda~~~~~~~G-~~~vl~~~va~ 475 (477)
++++|+|||+++..+++| ++++++..+++
T Consensus 353 ~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~ 382 (394)
T 2rfq_A 353 TPLQRFWRDAHAGRVHAANDPERAYVMYGT 382 (394)
T ss_dssp CHHHHHHHHHHHHTTSGGGCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcccccCchhHHHHHHH
Confidence 999999999999999999 99999999986
No 36
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=2.4e-55 Score=452.22 Aligned_cols=358 Identities=13% Similarity=0.014 Sum_probs=307.8
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHH
Q 011790 57 LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEV 133 (477)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~ 133 (477)
.++++.+++|++. +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+.++|+
T Consensus 38 ~~l~~~~r~~~~~--------------~~~~a-~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 102 (422)
T 2jbr_A 38 VSMLEKIQQILPQ--------------IAKNA-ESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVT 102 (422)
T ss_dssp CCHHHHHHHHHHH--------------HHHTH-HHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHHhh-HHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHH
Confidence 3588999999863 23332 456777789999999999999999999999987 78999999999
Q ss_pred HhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecC
Q 011790 134 TGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTP 213 (477)
Q Consensus 134 la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp 213 (477)
+++.|+++++.+..| .++...|..+|+++|+++|+++ |+.++|+++| | +|+|++++ |||+||
T Consensus 103 la~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~--~g~~ln-- 164 (422)
T 2jbr_A 103 LAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVE--GGIILN-- 164 (422)
T ss_dssp HHHHCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEET--TEEEEE--
T ss_pred HHhhCcCHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeC--CEEEEe--
Confidence 999999999877776 4778889999999999999996 8889999988 4 57899986 899999
Q ss_pred CCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCc
Q 011790 214 CESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPR 293 (477)
Q Consensus 214 ~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~ 293 (477)
|+|+||||+.. |||++|+|++.++++.+++++|+||. .||++.+.|+++|++++++++|.|+||+||+
T Consensus 165 ---G~K~~is~a~~-Ad~~~v~a~~~~~~g~~g~~~flV~~--------~gv~v~~~~~~~G~r~~~~~~v~fddv~VP~ 232 (422)
T 2jbr_A 165 ---GDYGWSSGCDH-AEYAIVGFNRFDADGNKIYSFGVIPR--------SDYEIVDNWYAQAIKSSGSKMLKLVNVFIPE 232 (422)
T ss_dssp ---EEEEEETTGGG-CSEEEEEEEEECTTSCEEEEEEEEEG--------GGCEEECCCCBSSSGGGCCEEEEEEEEEEEG
T ss_pred ---eeEeeecCCcc-ccEEEEEEEecCCCCCceeEEEEEEc--------CceEEeCCccccCcCCCCCCcEEEeeEEecH
Confidence 99999999997 99999999987544455899999994 4799999999999999999999999999999
Q ss_pred ccccCCCCCcCCCCcccccCCCcchH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCCCC
Q 011790 294 ENLLNSVADVSPDGQYLSSIKDPDQR-----FAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRR--AFSITPNGP 366 (477)
Q Consensus 294 ~~ll~~~~~v~~~g~~~~~~~~~~~~-----~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~--qfg~~~~~~ 366 (477)
+++|+....++ |.+ ++.+ +...+..+..+|+.+++.++|+++++++.+++|+++|+ |||+|
T Consensus 233 ~~~lg~~~~~~--g~~------~g~g~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~---- 300 (422)
T 2jbr_A 233 YRISKAKDMME--GKS------AGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGAN---- 300 (422)
T ss_dssp GGEEEHHHHHH--TCS------TTTTSCTTCSSSSSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCB----
T ss_pred HHeeccccccc--CCC------CcccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc----
Confidence 99998520000 000 0112 23334566788999999999999999999999999998 99998
Q ss_pred ccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH----hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011790 367 EVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYV----NRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQG 442 (477)
Q Consensus 367 ~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G 442 (477)
|+++|.+|++|++|.+++++++++++++++.++ ... ....+....++++|+++++.+.++++.|+|+|||.|
T Consensus 301 ---i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g~-~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g 376 (422)
T 2jbr_A 301 ---VGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQ-YPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATS 376 (422)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred ---cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 999999999999999999999999999999998 321 112234567899999999999999999999999999
Q ss_pred ccCcCchHHhhhcccccccccccH-HHHHHHhhc
Q 011790 443 LKTENRVGHLKGEFDVQLTFEGDN-NVLMQQVLL 475 (477)
Q Consensus 443 ~~~~~~l~r~~rda~~~~~~~G~~-~vl~~~va~ 475 (477)
|+.+++++|+|||+++..+++|++ ++++..|++
T Consensus 377 ~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~ 410 (422)
T 2jbr_A 377 FMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGR 410 (422)
T ss_dssp GBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHH
Confidence 999999999999999999999999 999999986
No 37
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=2.7e-50 Score=423.64 Aligned_cols=334 Identities=17% Similarity=0.151 Sum_probs=285.8
Q ss_pred HHHHHHHHHHcCcccccc--ccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccc
Q 011790 99 TMKRISYLLERNVFEGWL--TAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYV 176 (477)
Q Consensus 99 ~~~~~~~l~~~Gl~~~~~--p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~ 176 (477)
..+.++.+.+.||+++.+ |+++||...... ....++..+.+....+.++. .++..|..+| ++|+++|+|++.+|+
T Consensus 88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~-~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge 164 (541)
T 3djl_A 88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAA-RFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDR 164 (541)
T ss_dssp HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHH-HHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSC
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHH-HHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCC
Confidence 467889999999999999 688987322221 11122222333333333443 3566788899 999999999999999
Q ss_pred e-------------EEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCC
Q 011790 177 V-------------LGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGK 243 (477)
Q Consensus 177 ~-------------~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~ 243 (477)
+ ++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+| +.. |||++|+|+++
T Consensus 165 ~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~-~g~y~Ln-----G~K~f~S-a~~-Ad~~lVlArt~---- 232 (541)
T 3djl_A 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLE-DGSYRLV-----GHKWFFS-VPQ-SDAHLVLAQTA---- 232 (541)
T ss_dssp CCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEE-CTT-SSEEEEEEEET----
T ss_pred cccccccccccccceeEEEeccCCcCCCcccceeEEEEcC-CCeEEEE-----EEEEeec-ccc-cCEEEEEEEEC----
Confidence 8 88999999999999999999999983 3899999 9999999 776 99999999983
Q ss_pred cCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHH
Q 011790 244 NQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAF 323 (477)
Q Consensus 244 ~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~ 323 (477)
+|+++|+||.+..++ ..+||++.+.|+++|++++++++|.|+||+ +++||. ++.|+..+
T Consensus 233 -~Gis~flVp~~~p~~-~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~----------------~g~G~~~~ 291 (541)
T 3djl_A 233 -GGLSCFFVPRFLPDG-QRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGL----------------EGEGIRLI 291 (541)
T ss_dssp -TEEEEEEEESBCTTS-CBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESS----------------TTCHHHHT
T ss_pred -CceEEEEEecCCCCC-CcCCeEEeeccccCCCcCCceeEEEEccce---eeeeec----------------CCchHHHH
Confidence 579999999764221 124999999999999999999999999995 889996 78899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011790 324 MAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVN 403 (477)
Q Consensus 324 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~ 403 (477)
+..+..+|+.+++.++|+++++++.+++|+++|++||+| |+++|.+|++|+++.+.+++++++++++++.++.
T Consensus 292 ~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~~-------i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~ 364 (541)
T 3djl_A 292 LKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNP-------LIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR 364 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCc-------hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998 9999999999999999999999999999999986
Q ss_pred cCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011790 404 RTPQS-NKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 404 ~~~~~-~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
..... .......++++|+++++.+.++++.|+|++||+||..+++++|+|||+++..+++|++++++..|+|
T Consensus 365 ~~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r 437 (541)
T 3djl_A 365 RADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLR 437 (541)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHH
Confidence 42100 0124567889999999999999999999999999999999999999999999999999999999986
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4.3e-37 Score=319.63 Aligned_cols=273 Identities=12% Similarity=0.080 Sum_probs=223.5
Q ss_pred HhccCC--HHHHHHhhhhhcccceEEEEEccCCCCC--------CCC-CCCeeEEEEeCCCCeEEEecCCCCceeeeecC
Q 011790 156 IQFFGT--QRHHEKWLRDTENYVVLGCFAMTELGHG--------SNV-RGIETVTTYDANTGEFIINTPCESAQKYWIGG 224 (477)
Q Consensus 156 i~~~gt--~~q~~~~l~~i~~g~~~~~~a~tE~~~G--------sd~-~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~ 224 (477)
+..+|+ ++|+++||+++.+|++++|+++|||+.| ||+ ..++ +|++++ |||+|| |+|+||||
T Consensus 120 ~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~g--dg~vln-----G~K~~iT~ 191 (490)
T 1u8v_A 120 DQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKRE--DGIVVR-----GAKAHQTG 191 (490)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECS--SEEEEE-----EEECSCTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEEC--CEEEEE-----eEEEEeeC
Confidence 458999 9999999999999999999999999874 775 4455 788775 899999 99999999
Q ss_pred ccccccEEEEEEEeeeC-CCcCceEEEEEEeeCCCCCCCCCeEEc---cCCCc----------ccc-Cc-ccceeEEecc
Q 011790 225 AANHATHTIVFSQLEIN-GKNQGVHAFICQIRDAAGNICPNIRIA---DCGHK----------IGL-NG-VDNGRIWFDN 288 (477)
Q Consensus 225 a~~~A~~~~v~A~~~~~-~~~~g~~~flV~~~~~~~~~~pGv~i~---~~~~~----------~Gl-~g-~~~~~i~f~~ 288 (477)
+.. ||+++|+|++..+ +...++++|+||.+ .|||++. +.+.+ +|+ +. .+.+.|.|||
T Consensus 192 a~~-Ad~~iV~art~~~~~~~~~~s~flVp~d------~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~Fdd 264 (490)
T 1u8v_A 192 SIN-SHEHIIMPTIAMTEADKDYAVSFACPSD------ADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDN 264 (490)
T ss_dssp CTT-CSEEEECCSSCCCGGGGGGCEEEEEETT------CTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEE
T ss_pred Ccc-cCEEEEEEecCCCCCCCCeEEEEEEECC------CCCEEEEecccccccccccccccCCccccccCCceEEEEECc
Confidence 997 9999999998532 22335889999975 7999994 44544 666 63 6778899999
Q ss_pred eecCccccc--CCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 011790 289 VRIPRENLL--NSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGP 366 (477)
Q Consensus 289 v~VP~~~ll--~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~ 366 (477)
|+||.+++| +. ++.++......+...|+.+++.++|.++.++..+...... ||
T Consensus 265 V~VP~e~vl~~g~----------------~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g------ 319 (490)
T 1u8v_A 265 VFIPNDRIFLCQE----------------YDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG------ 319 (490)
T ss_dssp EEEEGGGEEEESC----------------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT------
T ss_pred eEeCHHHccCCCC----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC------
Confidence 999999998 53 5678877777777888888777777776666666554321 33
Q ss_pred ccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011790 367 EVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 367 ~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
|.++|.+|++|++|.+.+++++++++++++.++.. ..+. ......++++|+++++.+.++++.++|++||.|++
T Consensus 320 ---i~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~-~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~- 394 (490)
T 1u8v_A 320 ---AQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPT-AAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT- 394 (490)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEC-TTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH-
T ss_pred ---chhcHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-ccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc-
Confidence 89999999999999999999999999999887631 1111 13356789999999999999999999999999998
Q ss_pred cCchHHhhhcc-cccccccccHHHHHHHhh
Q 011790 446 ENRVGHLKGEF-DVQLTFEGDNNVLMQQVL 474 (477)
Q Consensus 446 ~~~l~r~~rda-~~~~~~~G~~~vl~~~va 474 (477)
.|+++.|||. ++..++|..+..++..++
T Consensus 395 -~p~er~~rd~~~~~~~~~~~~~~l~~~~~ 423 (490)
T 1u8v_A 395 -MPSEADFKSETVVGRDGETIGDFCNKFFA 423 (490)
T ss_dssp -CCCHHHHTCCCBCSTTSCBHHHHHHHHTC
T ss_pred -ChHHHHHhCchhccccchhHHHHHHHHhC
Confidence 8999999999 899999988888887654
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=2.3e-36 Score=313.70 Aligned_cols=267 Identities=9% Similarity=0.001 Sum_probs=219.1
Q ss_pred CHHHHHHhhhhhcccceEEEEEccCCCCC--------CCCCCCeeEEE-EeCCCCeEEEecCCCCceeeeecCccccccE
Q 011790 161 TQRHHEKWLRDTENYVVLGCFAMTELGHG--------SNVRGIETVTT-YDANTGEFIINTPCESAQKYWIGGAANHATH 231 (477)
Q Consensus 161 t~~q~~~~l~~i~~g~~~~~~a~tE~~~G--------sd~~~~~t~A~-~~~~~~~~ilntp~~~G~K~~is~a~~~A~~ 231 (477)
.++|+++|||++.+|++++|+++|||+.| ||+. +.|+++ ++ +|+|+|| |+|+|||| .. ||+
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~--gdg~Vln-----G~K~~iT~-~~-Ad~ 191 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQT--EKGIVVR-----GARMTATF-PL-ADE 191 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEEC--SSEEEEE-----EEEEEEEC-CC-SSE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEE--CCEEEEE-----eEEEEecc-cc-ccE
Confidence 47999999999999999999999999976 6764 667765 45 4899999 99999999 87 999
Q ss_pred EEEEEEeeeC-CCcCceEEEEEEeeCCCCCCCCCeEEc--cCCC--------ccccCc-ccceeEEecceecCccccc--
Q 011790 232 TIVFSQLEIN-GKNQGVHAFICQIRDAAGNICPNIRIA--DCGH--------KIGLNG-VDNGRIWFDNVRIPRENLL-- 297 (477)
Q Consensus 232 ~~v~A~~~~~-~~~~g~~~flV~~~~~~~~~~pGv~i~--~~~~--------~~Gl~g-~~~~~i~f~~v~VP~~~ll-- 297 (477)
++|+|+++.+ +...++++|+||.+ .|||++. +.+. ++|.+. .+++.|.||||+||.+++|
T Consensus 192 ~iV~art~~~~~~~~~~s~flVp~d------tpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~ 265 (481)
T 2yyk_A 192 VLIFPSILLQAGSEKYALAFALPTS------TPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFIL 265 (481)
T ss_dssp EEECCCSCCCTTCGGGCEEEEEETT------CTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEE
T ss_pred EEEEEecCCCCCCCCeEEEEEEECC------CCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCC
Confidence 9999998632 22346899999975 7999994 4433 256664 6788999999999999998
Q ss_pred CCCCCcCCCCcccccCCCcchHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchh
Q 011790 298 NSVADVSPDGQYLSSIKDPDQRFAAF--MAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPS 375 (477)
Q Consensus 298 ~~~~~v~~~g~~~~~~~~~~~~~~~~--~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~ 375 (477)
|. ++.++... ...+..+|+..++..+|.++.++..+.+++.. || |.++|.
T Consensus 266 G~----------------~~~g~~~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g---------i~~~q~ 317 (481)
T 2yyk_A 266 GN----------------VELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG---------ADVYGH 317 (481)
T ss_dssp SC----------------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT---------GGGSHH
T ss_pred CC----------------ccHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC---------hhhhHH
Confidence 53 55555444 56778899999999999999999999988864 43 999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhh
Q 011790 376 HQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKG 454 (477)
Q Consensus 376 ~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~r 454 (477)
+|++|++|.+.+++++++++++++.++.. +.+. ......++++|+++++.+.++++.|+|++||.|+. .|+++.|
T Consensus 318 vq~~laem~~~leaar~l~~~aa~~~d~~-~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~~~- 393 (481)
T 2yyk_A 318 VQEKIAEIIVYLEAMRAFWTRAEEEAKEN-AYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSEKDF- 393 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEC-TTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccc-ccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccHHHh-
Confidence 99999999999999999999999887531 1111 13456799999999999999999999999998888 8988888
Q ss_pred cccccc------cccccHHHHHHHhhc
Q 011790 455 EFDVQL------TFEGDNNVLMQQVLL 475 (477)
Q Consensus 455 da~~~~------~~~G~~~vl~~~va~ 475 (477)
|.++.. ...|.+++.+..|+|
T Consensus 394 ~~~i~~~l~~~l~~~g~~~~~r~~i~r 420 (481)
T 2yyk_A 394 KGPLGPFLEKFLQGAALEAKERVALFR 420 (481)
T ss_dssp HSTTHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred ChhhhHHHHHHHhcCCCCHHHHHHHHH
Confidence 885433 234999998888875
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.97 E-value=4.1e-31 Score=274.07 Aligned_cols=243 Identities=14% Similarity=0.055 Sum_probs=182.0
Q ss_pred cCC--HHHHHHhhhhhcccceEEEEEccCCCC--------CCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCcccc
Q 011790 159 FGT--QRHHEKWLRDTENYVVLGCFAMTELGH--------GSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANH 228 (477)
Q Consensus 159 ~gt--~~q~~~~l~~i~~g~~~~~~a~tE~~~--------Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~ 228 (477)
+|+ .+|+++||+++.+|++++|+++|||+. |||+ .++++ .++ +|||+|| |+|.||||+..
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~--gdg~Vln-----G~K~~iT~a~~- 196 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKT--DDGIIVN-----GVKAVGTGIAF- 196 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EEC--SSEEEEE-----EEEEEEESGGG-
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEE--CCEEEEE-----EEEEEECCccc-
Confidence 454 567899999999999999999999986 5788 55544 333 4899999 99999999997
Q ss_pred ccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccC-----c-----ccceeEEecceecCccccc-
Q 011790 229 ATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN-----G-----VDNGRIWFDNVRIPRENLL- 297 (477)
Q Consensus 229 A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~-----g-----~~~~~i~f~~v~VP~~~ll- 297 (477)
||+++|+|++..+.....+++|+||.+ .|||++...+.++|.+ . ..++.|.||||+||.+++|
T Consensus 197 Ad~~lV~a~t~~~~~~~~~s~FlVp~d------~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~ 270 (515)
T 3hwc_A 197 GDYMHIGCLYRPGIPGEQVIFAAIPTN------TPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFH 270 (515)
T ss_dssp CSEEEECCCCCTTCCGGGCEEEEEETT------CTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEE
T ss_pred cCEEEEEEEecCCCCCCeEEEEEEECC------CCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccC
Confidence 999999999733221223899999975 7999997666666632 2 2378899999999999999
Q ss_pred -CCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhH
Q 011790 298 -NSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSH 376 (477)
Q Consensus 298 -~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~ 376 (477)
|. ++.++..++..+...+....+..+|.+..++..+..++. .|| |.++|.+
T Consensus 271 ~Ge----------------~g~g~~~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g---------I~~fQ~V 322 (515)
T 3hwc_A 271 IGN----------------PEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HIG---------TSKLPTV 322 (515)
T ss_dssp ESC----------------TTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT---------CTTSHHH
T ss_pred CCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC---------CcccHHH
Confidence 54 456665543333333211112334455555554444432 244 9999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011790 377 QRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 377 q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
|++|++|.+.+++++++++++++..+.............++++|.++++.+.++++.++|++||.+++.
T Consensus 323 q~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~ 391 (515)
T 3hwc_A 323 SARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMI 391 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeC
Confidence 999999999999999999999987764110001234567899999999999999999999999999975
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.93 E-value=2.2e-24 Score=223.92 Aligned_cols=249 Identities=13% Similarity=0.061 Sum_probs=188.4
Q ss_pred HHHHHhhhhhcccceEEEEEccCCCCC-----CCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEE
Q 011790 163 RHHEKWLRDTENYVVLGCFAMTELGHG-----SNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQ 237 (477)
Q Consensus 163 ~q~~~~l~~i~~g~~~~~~a~tE~~~G-----sd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~ 237 (477)
+...+|+..+...++..+.++|+|... +....+-...+.. .++||+|| |.|.|+||++. ||+++|+++
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~-~~dGiVVn-----GaK~~~T~a~~-Ad~i~V~a~ 206 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEK-NDKGIVVS-----GVKAIGTGVAF-ADWIHIGVF 206 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEE-CSSEEEEE-----EEEEEEESGGG-CSEEEECCC
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEE-cCCeEEEe-----eEehhhcCccc-cCEEEEEee
Confidence 345679999999999999999999632 1111112223322 24899999 99999999997 999999999
Q ss_pred eeeCCCcCceEEEEEEeeCCCCCCCCCeEEccC---------CCccccCccc-ceeEEecceecCccccc--CCCCCcCC
Q 011790 238 LEINGKNQGVHAFICQIRDAAGNICPNIRIADC---------GHKIGLNGVD-NGRIWFDNVRIPRENLL--NSVADVSP 305 (477)
Q Consensus 238 ~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~---------~~~~Gl~g~~-~~~i~f~~v~VP~~~ll--~~~~~v~~ 305 (477)
+....+.++...|+||.+ +|||++... ..+++.++.. .+.|.||||+||.++++ |.
T Consensus 207 t~~~~~~d~~~~F~VP~d------tPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge------ 274 (517)
T 4g5e_A 207 FRPGIPGDQIIFAATPVN------TPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGN------ 274 (517)
T ss_dssp CCTTCCGGGCEEEEEETT------CTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESC------
T ss_pred cCCCCCccceEEEEEecC------CCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCC------
Confidence 876655667889999975 899998322 2333333332 36799999999999987 53
Q ss_pred CCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHH
Q 011790 306 DGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLA 385 (477)
Q Consensus 306 ~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~ 385 (477)
++.++......+...|...++..+|.++.++..+..++.. +| |.++|.+|++|++|.+
T Consensus 275 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~---~G---------i~~fq~Vq~kLaEm~~ 332 (517)
T 4g5e_A 275 ----------PEHAKLYPQRVFDWLHYHALIRQSVRAELMAGLAILITEH---IG---------TNKIPAVQTRVAKLIG 332 (517)
T ss_dssp ----------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT---------CTTSHHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC---------CcccHHHHHHHHHHHH
Confidence 5677777777788888888888889999999988888853 44 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhc
Q 011790 386 KSYAASCAANYLKMMYVNRTPQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGE 455 (477)
Q Consensus 386 ~~~a~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rd 455 (477)
.+++++++++.++..-.. .+.+. ......++++|.++++...+++.+++|++||.|++. |-++.|++
T Consensus 333 ~~E~~ral~~aaa~~a~~-~~~G~~~P~~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~ 400 (517)
T 4g5e_A 333 FHQAMLAHIVASEELGFH-TPGGAYKPNILIYDFGRALYLENFSQMIYELVDLSGRSALIF--ASEDQWND 400 (517)
T ss_dssp HHHHHHHHHHHHHHTCEE-CTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--CCHHHhcC
Confidence 999999999877643322 11111 233567889999999999999999999999999984 33444444
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=92.14 E-value=0.98 Score=47.51 Aligned_cols=123 Identities=7% Similarity=-0.076 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 011790 339 VYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSA 418 (477)
Q Consensus 339 ~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (477)
+..++..+..++.++..|. |+. |.+.|.+..+|+++.+.+|++.+.+.++-+.+... +.........+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~--~~~-------~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~---~~~~~~~~~~~ 531 (597)
T 3owa_A 464 VNNAKKIGLMVAGLAAQKY--GKA-------LDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTT---GLEKNKQKVLY 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH--GGG-------GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--CCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CccchHHHHHH
Confidence 4444555555666666554 445 99999999999999999999999999999888742 13445667789
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHH-HHHHHhhc
Q 011790 419 FKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNN-VLMQQVLL 475 (477)
Q Consensus 419 ~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~-vl~~~va~ 475 (477)
+++||.+...++-..+.++. .++.+...+..++...+-+.-+...|. -++.+||+
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 587 (597)
T 3owa_A 532 TEVFCQEAFNEIEAHAKETL--IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAA 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 99999999999999999988 556665555555555554444444333 34444543
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=81.84 E-value=13 Score=39.00 Aligned_cols=67 Identities=9% Similarity=-0.073 Sum_probs=53.0
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011790 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+.+.|.+..||+++...+|++.+++.++.+.++.. .........+++.|+.+...++-..+.++..+
T Consensus 510 ~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 576 (607)
T 2uxw_A 510 IVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEG----HPTAQHEKMLCDTWCIEAAARIREGMAALQSD 576 (607)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999988777543 22333346678888888888887777776654
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=43.47 E-value=2.7e+02 Score=28.45 Aligned_cols=93 Identities=13% Similarity=0.003 Sum_probs=62.7
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCch
Q 011790 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRV 449 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l 449 (477)
+...|.+-.+++++...+++++..+.++.+. . +. ....++.++.+...++...+.+++-+ +....|.
T Consensus 472 l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~-----~~----~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 538 (577)
T 2z1q_A 472 VEEEQEVLGAVADILIDAYAAESALLRARRL--G-----GL----APVLARIYLAQALDRAQAGALSVLPR--LVEGDEA 538 (577)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----TT----HHHHHHHHHHHHHHHHHHHHHHHGGG--TCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-----Cc----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCch
Confidence 6667889999999999999999988877654 1 11 66788889988888888888888743 3333333
Q ss_pred HHhhhcccc-cccccccHHHHHHHhhc
Q 011790 450 GHLKGEFDV-QLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 450 ~r~~rda~~-~~~~~G~~~vl~~~va~ 475 (477)
.......+. ......+++-+..+||+
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~ia~ 565 (577)
T 2z1q_A 539 RVVYSAARRLTKREPGDLVALRRQAAE 565 (577)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 222222221 23344566677777775
Done!