BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011791
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 310 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV + D + + ++++ + +P+
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 72
Query: 310 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 132
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 72
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV + D + + ++++ + +P+
Sbjct: 85 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 143
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 74
Query: 310 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 74
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV + D + + ++++ + +P+
Sbjct: 87 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 145
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E +++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAE-SKNFEVMLISWD 74
Query: 310 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAESKNFEVMLISWD 74
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV + D + + ++++ + +P+
Sbjct: 87 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 145
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 371 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHE-HELVLDRCGVYSCDGCDEEGRVW 429
G+ TEER+KEI+ +Y+E+AK WP+ VKH LHE HEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 430 AFSCDECDFCLHPNCALGED 449
++ CDECDF LH CAL ED
Sbjct: 61 SYHCDECDFDLHAKCALNED 80
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 15 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 73
Query: 313 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 368
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 74 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 131
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 19 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 77
Query: 157 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 78 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 40
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 83 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 123
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 313 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 368
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 132
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 157 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 40
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 313 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 157 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 40
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 313 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 368
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 132
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 157 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 40
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 310 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV + D + + ++++ + +P+
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 313 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 367
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156
++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 157 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 40
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315
G+V + L GKT+ LYFSA WCPPCR F P L + Y+K ++ EVV IS D +++ F
Sbjct: 19 GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDF 77
Query: 316 DEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAIGP-SGRTITKEARDMI 367
+++ MPWLALPF S L + F V IP L+ I +G I +AR +
Sbjct: 78 HDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 93 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENE 74
Query: 153 ESFKRDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPDGKTLHSNVAEA--IEE 209
F G MPWLALPF +S +L + F + ++PTL+ I D + A IE+
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 210 HGVGAFPF 217
FP+
Sbjct: 135 PDGANFPW 142
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 35
MPWLA+PF T +L + F V IP L+ ++ +
Sbjct: 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINAD 118
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
K + L+GKT+ YFSA WCPPCR F P+L++ Y+K + +++ E++ S D ++
Sbjct: 36 KQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD-SKNFEIILASWDEEE 94
Query: 313 TSFDEFFKGMPWLALPFGDARKA-SLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAVH 370
F+ ++ MPWL++PF + +L++K+ V IP L+ + +G T+T AR +
Sbjct: 95 DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQD 154
Query: 371 G-AEAYPFTEE 380
E +P+ +E
Sbjct: 155 PMGEQFPWRDE 165
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159
+ L GKT+ YFS S FTP+LVE YEK ++FEI+L S D+EE+ F
Sbjct: 43 MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYY 101
Query: 160 GSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVG-AFP 216
MPWL++PF +++ E L + + + ++PTL+ + D G T+ + A+ + +G FP
Sbjct: 102 AKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFP 161
Query: 217 FTPE 220
+ E
Sbjct: 162 WRDE 165
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 35
MPWL++PF++ + L + + V IP L+ L+ +
Sbjct: 104 MPWLSIPFANRNIVEALTKKYSVESIPTLIGLNAD 138
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 250 VVGKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
+V KN +V ++ L K I+ YFSAHWCPPCR F P L D Y ++ + + E++F+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 308 SDRDQTSFDEFFKGM-----PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362
SDR + D+ F+ M WLA+P+ ++++ K+ ++GIP LV + G I+
Sbjct: 69 SDRSE---DDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMN 125
Query: 363 ARDMIAVHGAEAY 375
R + G A+
Sbjct: 126 GRGEVQSLGPRAF 138
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGSM-PWL 165
IG YFS FTP L ++Y +L FEI+ +S D E++ F+ + S WL
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 166 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 215
A+P++ + + ++ +P LVI+ DG + N ++ G AF
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGY 55
WLA+P+ S + + + GIP LVI+ ++G ++S G ++ G +
Sbjct: 87 WLAIPYR-SGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WCP C+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154
G S++DL+GK + + F++ + SA L E+Y K +G FEI ISLD +E
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 155 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 192
+K ++PW+ + + + + ++ LP++ ++
Sbjct: 83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLV 120
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WC C+ P + + YK K ++ +E+V ++ +
Sbjct: 12 NGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 69
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 70 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 114
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG--VE 58
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 59 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 114
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WC P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F W PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F WC PC+ P + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGP 354
+ F K + P + + VS +P I P
Sbjct: 73 AVHNFXKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 84 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + P Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 195
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+
Sbjct: 62 IVAVNVGESKIAVHNFXKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPE 113
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI--SSDRD 311
NG V ++DL GK I + A WC PCR LP L K+++E+ ++ F+ S D++
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPAL----KELEEKYAGKDIHFVSLSCDKN 74
Query: 312 QTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
+ +++ + + L G R + + ++GIP + + G+ I+
Sbjct: 75 KKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKIIS 123
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 76 QSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK 135
SLRS S + +G+ +S++DL+GK I + + P L E+ EK
Sbjct: 1 MSLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA 60
Query: 136 GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 195
GK F V +S D +++++ + + + + ++ +P +++ D
Sbjct: 61 GKDIHF--VSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRD 118
Query: 196 GKTLHSNVAEAIEEHGVGAFPFTPEKF 222
GK + +N+ + P T EKF
Sbjct: 119 GKIISANMTRPSD-------PKTAEKF 138
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEF 318
+SD GKT+L+ A WC PCR +P L + K+ N EVV I+ D RD F
Sbjct: 55 LSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTF 112
Query: 319 FKGMPWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSG 356
K L + + +KA + + K G+P V + P G
Sbjct: 113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG ++ +SDL GK + L F W P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 84 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 142
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 143 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 248 DFVVGK-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
DF + NG V +SDL G+ +++ F A WCPPCR +P + + +
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPS--XXRLNAAXAGKPFRXLCV 67
Query: 307 SSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
S D + + +EFF+ + DA K + + + +G+P I G + K
Sbjct: 68 SIDEGGKVAVEEFFRKTGFTLPVLLDADK-RVGKLYGTTGVPETFVIDRHGVILKK 122
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS- 308
++G +G +SD GK + L F A WC C A LP D + KE + V+ + S
Sbjct: 7 LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLP---DTDEIAKEAGDDYVVLTVVSP 63
Query: 309 ----DRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
++ + F ++KG+ + LP L + V P I G+ +
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLV 118
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV-FISSDRDQTSFDEFFKGMP 323
G+ +L+F WCPPC+ LP+ Y + L V ++S+++Q ++F K
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANK 93
Query: 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383
L P K L +++ + IP + G + + P T E++K
Sbjct: 94 -LTFPIVLDSKGELXKEYHIITIPTSFLLNEKGE-----------IEKTKIGPXTAEQLK 141
Query: 384 E 384
E
Sbjct: 142 E 142
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314
G V ++D GK +L+ F C CR P L+ Y K++ + +S+DR +
Sbjct: 19 GNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREED 76
Query: 315 FDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
+ + + W + + + + G P ++ + P G+ + KE R
Sbjct: 77 WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 40
W V + +D L E + ++G PH++++D GK+++
Sbjct: 88 WNQVLLQKDDVKDVL-ESYCIVGFPHIILVDPEGKIVA 124
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 248 DFVVGKNGGK-VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
DF + GK V +S L GK ++L F+A WC CR +P I+ +K ++ + + I
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEKDIWLKHKDNA-DFALI 72
Query: 307 SSDRDQTSFDEF-FKGMPWLALPFGDARKASLSRKFKV--SGIPMLVAIGPSGRTITKEA 363
DRD+ F + P G A + K+ + +GI V I G+ I K
Sbjct: 73 GIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGK-IVKLT 131
Query: 364 RDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394
R + EE + Q NEM K
Sbjct: 132 R-----------LYNEEEFASLVQQINEMLK 151
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
DF + G V +SD G + L F A WC PCR P K K + +VV ++
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAK--GFQVVAVN 68
Query: 308 SDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
D +F +P K R + V G P I +G+ + +
Sbjct: 69 LDAKTGDAXKFLAQVP-AEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQ 121
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 238 LESVLVSGDLDFVVGK-----NGGKVPVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAY 291
LE L + +++ +VGK P+ AG K ++L WC PC+A PK Y
Sbjct: 4 LELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK----Y 59
Query: 292 KKIKERNESLEVVFISSDRDQ 312
+K+ E E L+V+F+ D +Q
Sbjct: 60 EKLAE--EYLDVIFLKLDCNQ 78
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 297
+ L GK ++ F A WCPPCR+ +P + K R
Sbjct: 30 ASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASR 66
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 259 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
P+ AG K ++L WC PC+A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 18 PIVKAAGDKPVVLDMFTQWCGPCKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 66
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+G V +DL GK L+ F CP C + +PK+I K +N +V+ ++ D
Sbjct: 17 HGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPI 74
Query: 314 -SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
S ++ K G+P+ + DA KA + + F P V IG G +
Sbjct: 75 ESVRQYVKDYGLPFTVMY--DADKA-VGQAFGTQVYPTSVLIGKKGEIL 120
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 152
G+ +S +DL+GK + F S P++++ K K V +D E
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77
Query: 153 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 205
+ +D G +P+ + DK+ + + F PT V+IG G+ L + V E
Sbjct: 78 RQYVKDYG-LPFTVMYDADKA---VGQAFGTQVYPTSVLIGKKGEILKTYVGE 126
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 322
A + +L+YF A WC PC+ P + A +R L+VV + D + T+ ++ +G+
Sbjct: 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNPTTVKKYKVEGV 80
Query: 323 PWLALPFGD 331
P L L G+
Sbjct: 81 PALRLVKGE 89
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 247 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVV 304
+DF + G V +S K +LL+F CP C L L AY+K+ + E ++V+
Sbjct: 17 VDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVI 76
Query: 305 FISSD 309
F+S D
Sbjct: 77 FVSVD 81
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 304
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 22 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 65
Query: 305 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 352
F+ D D+ +RK+ +S +P +AI
Sbjct: 66 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 92
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 304
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 13 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 56
Query: 305 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 352
F+ D D+ +RK+ +S +P +AI
Sbjct: 57 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 83
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
+G + ++++ G ++L+F A WCP C ++ L+D ++ E+ + V+ I
Sbjct: 26 DGEVISLNNVGGDVVILWFMAAWCPSC-VYMADLLD---RLTEKYREISVIAI 74
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 244 SGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV 303
+ DL+ ++ +N G++ V D F A WC PCR PK+ K+I EV
Sbjct: 7 AADLEKLINENKGRLIVVD---------FFAQWCGPCRNIAPKVEALAKEIP------EV 51
Query: 304 VFISSDRDQ 312
F D DQ
Sbjct: 52 EFAKVDVDQ 60
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
AGK +++ F+A WC PCR P + KK VF+ D D+
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP------GAVFLKVDVDE 77
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 257 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
++ ++ A K +++ F+A WC PCR P D KK VF+ D D+
Sbjct: 26 QIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP------NAVFLKVDVDE 75
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
++ +GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 67
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 242 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 299
L G++ + K +S+ + GK +L FSA WC PC+ P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAP----YYIELSENYP 76
Query: 300 SLEVVFISSD 309
SL + I D
Sbjct: 77 SLMFLVIDVD 86
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 62
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKK 293
GK +++ F+A WC PCR P + KK
Sbjct: 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKK 56
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
K I++ F+A WCPPC+ P + KK V F+ D D+
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP------NVTFLKVDVDE 67
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325
K I+LYF W PC+A L ++ I + V F+S D D+ S
Sbjct: 22 KLIVLYFHTSWAEPCKA----LKQVFEAISNEPSNSNVSFLSIDADENS----------- 66
Query: 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362
+S F++S +P + I TI KE
Sbjct: 67 ----------EISELFEISAVPYFIIIHKG--TILKE 91
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL-EVVFISSDRDQ 312
+++ K +++ F A WC PC+ PKL +E ++S+ +VVF+ D D+
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKL-------EELSQSMSDVVFLKVDVDE 61
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 259 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
P+ AG K ++L WC P +A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 17 PIVKAAGDKPVVLDMFTQWCGPSKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 65
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSDGGVEIIREYGVEGYP 56
+P + VP S T + LD LF ++ G+P + N K + G+ G++ YP
Sbjct: 92 LPVIGVPVKTS-TLNGLDSLFSIVQMPGGVPVATVAINNAK---NAGILAASILGIK-YP 146
Query: 57 FTVERIKEMKEQEERAKREQSLR 79
++KE KE+ +R E++ R
Sbjct: 147 EIARKVKEYKERMKREVLEKAQR 169
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ---TSFDEFFKGMP 323
+++ F+A WC PCR P D KK+ V+F+ D D+ + D + MP
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLP------NVLFLKVDTDELKSVASDWAIQAMP 93
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326
T+LL F A WC C+ F P+ +K+ + + V I
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI-------------------- 75
Query: 327 LPFGDARKAS-LSRKFKVSGIPML 349
DA AS L+ KF VSG P +
Sbjct: 76 ----DATSASMLASKFDVSGYPTI 95
>pdb|1WOU|A Chain A, Crystal Structure Of Human Trp14
Length = 123
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 26/111 (23%)
Query: 260 VSDLAGKTILLYFSAH-------WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
V GKTI YF+ WCP C P + + K I E VFI +
Sbjct: 19 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG-----CVFIYCQVGE 73
Query: 313 TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
P+ P D RK KV+ +P L+ G + + E
Sbjct: 74 K---------PYWKDPNNDFRK-----NLKVTAVPTLLKYGTPQKLVESEC 110
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318
+ L GK +L+F WCP C A P L ++ N ++ V I++ D + F
Sbjct: 20 ASLQGKPAVLWFWTPWCPFCNAEAPSL----SQVAAANPAVTFVGIATRADVGAMQSF 73
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 242 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 299
L G++ + K +S+ + GK +L FSA WC P R P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP----YYIELSENYP 76
Query: 300 SLEVVFISSD 309
SL + I D
Sbjct: 77 SLMFLVIDVD 86
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 321
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKD-GEFQKWYAG 97
Query: 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
+ + LP ++++ +S P IG G
Sbjct: 98 LNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDG 132
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 321
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 25 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 83
Query: 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
+ + LP ++++ +S P IG G
Sbjct: 84 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 118
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 321
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 24 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 82
Query: 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
+ + LP ++++ +S P IG G
Sbjct: 83 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 117
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPK 286
G + VV KN ++ + D K +L+ F A WC C+A PK
Sbjct: 7 GPVTVVVAKNYNEIVLDDT--KDVLIEFYAPWCGHCKALAPK 46
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
++ A K +++ F+A WC P R P D KK VF+ D D+
Sbjct: 33 ANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFP------NAVFLKVDVDE 78
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 25/84 (29%)
Query: 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326
T+LL F A WC C+ F P+ Y+KI I D+D P +
Sbjct: 34 TVLLEFYAPWCGHCKQFAPE----YEKIAN---------ILKDKD-----------PPIP 69
Query: 327 LPFGDARKAS-LSRKFKVSGIPML 349
+ DA AS L+ +F VSG P +
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTI 93
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 412
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 82 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 134
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 135 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 190
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 191 IIGPDGKTLHSNVAEAI 207
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 433
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 82 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 134
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 135 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 190
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 191 IIGPDGKTLHSNVAEAI 207
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|1V9W|A Chain A, Solution Structure Of Mouse Putative 42-9-9 Protein
Length = 130
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 26/111 (23%)
Query: 260 VSDLAGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
V + KTI YFS WCP C P + + K + E + VFI
Sbjct: 26 VKEHESKTIFAYFSGSKDTEGKSWCPDCVEAEPVIREGLKHVTE-----DCVFIYCQVGD 80
Query: 313 TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
P+ P D R +K K++ +P L+ G + + E
Sbjct: 81 K---------PYWKDPNNDFR-----QKLKITAVPTLLKYGTPQKLVESEC 117
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325
K LL F A+WC CRA L K + K + EVV I D +FD + L
Sbjct: 30 KPTLLVFGANWCTDCRA-LDKSLRNQKNTALIAKHFEVVKI----DVGNFDRNLE----L 80
Query: 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
+ +GD + GIP +V + G+
Sbjct: 81 SQAYGDPIQ---------DGIPAVVVVNSDGK 103
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 283 FLPKLIDAYKKIKERNESLEVVFI 306
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 283 FLPKLIDAYKKIKERNESLEVVFI 306
F KL D KKIK+RNE+LEV +I
Sbjct: 1030 FQDKLEDISKKIKQRNENLEVPYI 1053
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 283 FLPKLIDAYKKIKERNESLEVVFI 306
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 283 FLPKLIDAYKKIKERNESLEVVFI 306
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 283 FLPKLIDAYKKIKERNESLEVVFI 306
F KL D KKIK+RNE+LEV +I
Sbjct: 663 FQDKLEDISKKIKQRNENLEVPYI 686
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 322
A K +L+ F A WC C+A P+ A K+K + + + + + ++ +G
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 323 P 323
P
Sbjct: 83 P 83
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 265 GKTILLYFSAHWCPPCRAFLP---KLIDAYKK 293
GK +L+ F A WCP CR P +L+ ++ K
Sbjct: 41 GKIVLVNFWASWCPYCRDEXPSXDRLVKSFPK 72
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 322
A IL+ F A WC PC+ P L D E L V ++ D++ + ++ +G+
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDDI---ADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 75
Query: 323 PWLAL 327
P L L
Sbjct: 76 PTLLL 80
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
Query: 18 DELFKVMGIP---HLVILDENGKVLSDGGVEIIREYGVEGYPFTVER----IKEMKEQEE 70
++ F +GIP HL + E G+V + +R G+ G T+ I + E +E
Sbjct: 43 NDAFARLGIPARYHLFSV-EPGQV--GAAIAGVRALGIAGVNVTIPHKLAVIPFLDEVDE 99
Query: 71 RAKREQSLRSVLTSHSR-----------------DFVISSDGRKISVSDLEGKTIGLYFS 113
A+R ++ +++ + R + I+ DG++I V G G+YFS
Sbjct: 100 HARRIGAVNTIINNDGRLVGYNTDGLGYVQALEEEMNITLDGKRILVIGAGGGARGIYFS 159
Query: 114 MSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152
+ S A + R VE E+L +G+ SL + E
Sbjct: 160 LLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAE 199
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 263 LAGKTILLYFSAHWCPPCRAFLP 285
L GK +L+F A WCP C+ P
Sbjct: 23 LLGKPAVLWFWAPWCPTCQGEAP 45
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 263 LAGKTILLYFSAHWCPPCRAFLP 285
L GK +L+F A WCP C+ P
Sbjct: 37 LLGKPAVLWFWAPWCPTCQGEAP 59
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 232 KEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAY 291
K+E TL VL + D V+ N K +L+ A WC PC + P Y
Sbjct: 1 KKEDVTL--VLTEENFDEVIRNN-----------KLVLVDCWAEWCAPCHLYEP----IY 43
Query: 292 KKIKERNESLEVVF--ISSDRDQTSFDEF 318
KK+ E+ + + VF ++ D +Q D++
Sbjct: 44 KKVAEKYKG-KAVFGRLNVDENQKIADKY 71
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 216 PFTPEKFAELAE-IQRAKEESQTLESVLVSGDLDFVVGKNGGKVP 259
P TPE + ELAE I KE S+ L +VSG++ G ++P
Sbjct: 492 PETPEGYHELAETIAGLKEASEALGVPVVSGNVSLYNESGGKRIP 536
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGMPWL 325
+L F A WC PC+ P L + +E + L++V I D +Q + ++ +P L
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELD---QEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 326 ALPFGDARKASLSRKFK 342
L D S FK
Sbjct: 76 -LVLKDGEVVETSVGFK 91
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 39 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 98
L+DG + E G P + + E +R+ L H DF ISSDG +
Sbjct: 21 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISSDGTAM 80
Query: 99 SVSDLE 104
+ SD+E
Sbjct: 81 NKSDVE 86
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 266 KTILLYFSAHWCPPCRAFLPKL 287
K +L+ F A WC PCR P L
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSL 45
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
+L F A WC C+ P+ + A + + E+N +L + + ++D
Sbjct: 34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD 77
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 12 ETRDKLDEL---FKVMGIPHLVILDENGKVLSDGGVE 45
E R K EL +KV G P LV +D GK L+ G E
Sbjct: 100 EQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFE 136
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314
K +++ F A WC PC+ P ++KI + +V F D D+ S
Sbjct: 34 KVVVIDFWATWCGPCKMIGP----VFEKISDTPAGDKVGFYKVDVDEQS 78
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 261 SDLAGKTILLYFSAHWCPPCRAFLPKL 287
+DL GK L+ WCP CR P+L
Sbjct: 54 ADLKGKPALVNVWGTWCPSCRVEHPEL 80
>pdb|2FHX|A Chain A, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
pdb|2FHX|B Chain B, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
Length = 246
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 4 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE--- 60
++ PF + T+ +D + K M +V ++ + + GG EI ++ G E + +
Sbjct: 45 VSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQL 104
Query: 61 RIKEMKEQEERA----KREQSLRSVLTSH 85
R++E K+ +A K E R +L+SH
Sbjct: 105 RLEENKKDRIKAAEFYKNEDLKRRILSSH 133
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 262 DLAG-KTILLYFSAHWCPPCRAFLP 285
D AG K +++ FSA WC PC+ P
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP 40
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 20/115 (17%)
Query: 148 LDDEEESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGKTL-----HS 201
+DD + G W + D + LA+ F L T V++ PDGKT+ H
Sbjct: 251 IDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 310
Query: 202 NVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE-------------SQTLESVLV 243
V EH G P + A + R E +QTLE V V
Sbjct: 311 TVTRHYREHQKGR-PTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCV 364
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 118 KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL--GSMPW-LALPFKDKSR 174
+A+AE RL + Y+K K +F + ISLD + E+++ + ++ W F S
Sbjct: 50 EANAELK-RLNKEYKKNK----NFAXLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSS 104
Query: 175 EKLARYFELSTLPTLVIIGPDGKTLHSNV 203
E A+ + + TLPT +++ P GK L ++
Sbjct: 105 ET-AKQYAILTLPTNILLSPTGKILARDI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,848,020
Number of Sequences: 62578
Number of extensions: 647659
Number of successful extensions: 2264
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2095
Number of HSP's gapped (non-prelim): 179
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)