Query 011791
Match_columns 477
No_of_seqs 551 out of 3505
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 6.3E-25 1.4E-29 188.9 13.0 130 88-217 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 1.2E-24 2.5E-29 187.9 10.8 120 96-215 16-142 (146)
3 cd03009 TryX_like_TryX_NRX Try 99.9 3.8E-24 8.3E-29 184.1 13.7 130 248-377 1-131 (131)
4 cd03008 TryX_like_RdCVF Trypar 99.9 6.7E-24 1.4E-28 183.1 11.1 119 256-374 16-141 (146)
5 cd02964 TryX_like_family Trypa 99.9 4.2E-23 9.1E-28 177.8 12.6 128 89-217 2-132 (132)
6 cd02964 TryX_like_family Trypa 99.9 1.9E-22 4E-27 173.7 13.1 127 250-377 3-132 (132)
7 KOG2501 Thioredoxin, nucleored 99.9 1.4E-22 3E-27 172.6 10.3 123 90-212 17-142 (157)
8 KOG2501 Thioredoxin, nucleored 99.9 4.2E-21 9.1E-26 163.5 12.0 120 252-371 19-141 (157)
9 PF13905 Thioredoxin_8: Thiore 99.8 9.8E-20 2.1E-24 147.4 11.2 93 105-198 1-95 (95)
10 PF13905 Thioredoxin_8: Thiore 99.8 1.5E-19 3.3E-24 146.3 12.3 93 265-358 1-95 (95)
11 PF08534 Redoxin: Redoxin; In 99.8 2.8E-19 6E-24 156.7 12.6 116 244-363 4-132 (146)
12 cd02967 mauD Methylamine utili 99.8 3.1E-19 6.8E-24 149.5 12.0 110 247-362 1-112 (114)
13 PRK14018 trifunctional thiored 99.8 2E-18 4.3E-23 177.3 16.6 128 245-387 37-170 (521)
14 PRK15412 thiol:disulfide inter 99.8 1.6E-18 3.5E-23 157.9 13.8 114 243-363 42-160 (185)
15 cd03012 TlpA_like_DipZ_like Tl 99.8 7.6E-19 1.7E-23 149.9 10.6 106 255-363 13-123 (126)
16 cd03010 TlpA_like_DsbE TlpA-li 99.8 1.3E-18 2.8E-23 148.7 11.7 112 246-362 3-117 (127)
17 PRK03147 thiol-disulfide oxido 99.8 3.1E-18 6.7E-23 154.5 14.7 117 243-362 38-155 (173)
18 cd00340 GSH_Peroxidase Glutath 99.8 9.4E-19 2E-23 154.4 9.6 113 247-363 3-140 (152)
19 cd02969 PRX_like1 Peroxiredoxi 99.8 5.3E-18 1.1E-22 152.7 14.4 146 245-398 3-157 (171)
20 PLN02399 phospholipid hydroper 99.8 4.1E-18 8.8E-23 158.9 13.3 118 243-363 76-218 (236)
21 cd02967 mauD Methylamine utili 99.8 4.3E-18 9.3E-23 142.5 11.7 111 87-203 1-113 (114)
22 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3.3E-18 7.1E-23 145.4 11.1 115 243-361 2-124 (124)
23 PTZ00102 disulphide isomerase; 99.8 7.2E-17 1.6E-21 169.2 23.5 171 177-395 294-467 (477)
24 PF08534 Redoxin: Redoxin; In 99.8 1.7E-18 3.8E-23 151.7 9.4 118 82-203 2-132 (146)
25 PTZ00056 glutathione peroxidas 99.8 8.1E-18 1.8E-22 154.5 13.5 118 243-363 16-162 (199)
26 PLN02412 probable glutathione 99.8 5.6E-18 1.2E-22 151.6 12.1 116 245-363 8-148 (167)
27 TIGR00385 dsbE periplasmic pro 99.7 1.1E-17 2.4E-22 150.8 12.7 115 241-362 35-154 (173)
28 cd03012 TlpA_like_DipZ_like Tl 99.7 5.3E-18 1.2E-22 144.7 9.0 107 94-203 12-123 (126)
29 PRK09437 bcp thioredoxin-depen 99.7 2.5E-17 5.4E-22 145.7 12.7 116 243-362 7-136 (154)
30 KOG0190 Protein disulfide isom 99.7 2.3E-17 5E-22 166.1 13.1 88 265-393 384-473 (493)
31 TIGR02661 MauD methylamine deh 99.7 5.9E-17 1.3E-21 148.0 14.5 129 242-390 48-179 (189)
32 cd03017 PRX_BCP Peroxiredoxin 99.7 2.7E-17 5.9E-22 142.9 11.8 113 246-362 3-126 (140)
33 PRK00522 tpx lipid hydroperoxi 99.7 4.8E-17 1E-21 145.6 12.7 116 243-363 21-148 (167)
34 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 1.7E-17 3.7E-22 140.9 9.2 116 82-201 1-124 (124)
35 cd03010 TlpA_like_DsbE TlpA-li 99.7 2.5E-17 5.4E-22 140.8 9.5 114 85-203 2-118 (127)
36 PRK14018 trifunctional thiored 99.7 1.5E-16 3.3E-21 163.5 16.2 118 82-203 34-157 (521)
37 TIGR01626 ytfJ_HI0045 conserve 99.7 6.9E-17 1.5E-21 144.4 11.9 140 236-393 27-183 (184)
38 TIGR02540 gpx7 putative glutat 99.7 8.3E-17 1.8E-21 142.1 11.9 114 247-363 3-137 (153)
39 cd03015 PRX_Typ2cys Peroxiredo 99.7 1.8E-16 3.9E-21 143.0 14.3 136 244-392 3-156 (173)
40 cd03014 PRX_Atyp2cys Peroxired 99.7 6.9E-17 1.5E-21 141.0 11.3 116 243-363 3-127 (143)
41 cd03018 PRX_AhpE_like Peroxire 99.7 1.4E-16 3E-21 140.0 12.8 117 243-363 4-131 (149)
42 PRK15412 thiol:disulfide inter 99.7 4.2E-17 9.2E-22 148.5 9.8 117 80-204 39-161 (185)
43 PTZ00256 glutathione peroxidas 99.7 1.2E-16 2.7E-21 145.1 12.8 116 245-363 19-165 (183)
44 PTZ00056 glutathione peroxidas 99.7 1.1E-16 2.4E-21 147.0 12.2 120 82-203 15-162 (199)
45 TIGR02187 GlrX_arch Glutaredox 99.7 1.1E-15 2.4E-20 142.7 19.0 171 107-357 21-197 (215)
46 cd02966 TlpA_like_family TlpA- 99.7 1.3E-16 2.9E-21 132.7 11.5 111 248-361 1-113 (116)
47 TIGR03137 AhpC peroxiredoxin. 99.7 1.3E-16 2.9E-21 145.4 11.8 118 242-362 4-135 (187)
48 cd00340 GSH_Peroxidase Glutath 99.7 4E-17 8.6E-22 144.0 7.6 115 86-204 2-141 (152)
49 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 2.3E-16 5E-21 133.9 11.6 106 247-361 1-108 (123)
50 PLN02399 phospholipid hydroper 99.7 1.6E-16 3.5E-21 148.2 11.1 123 79-203 72-218 (236)
51 TIGR02661 MauD methylamine deh 99.7 3.7E-16 8.1E-21 142.7 12.8 114 81-202 47-163 (189)
52 PRK03147 thiol-disulfide oxido 99.7 2.2E-16 4.8E-21 142.4 11.1 119 81-202 36-155 (173)
53 COG1225 Bcp Peroxiredoxin [Pos 99.7 8.2E-16 1.8E-20 132.7 13.3 117 242-362 6-136 (157)
54 cd02969 PRX_like1 Peroxiredoxi 99.7 2.8E-16 6.1E-21 141.5 10.8 118 83-203 1-127 (171)
55 PLN02412 probable glutathione 99.7 1.3E-16 2.9E-21 142.7 8.6 117 84-203 7-148 (167)
56 PRK00522 tpx lipid hydroperoxi 99.7 3.6E-16 7.7E-21 140.0 11.0 118 81-203 19-148 (167)
57 cd03014 PRX_Atyp2cys Peroxired 99.7 3.3E-16 7.2E-21 136.7 10.6 117 82-203 2-127 (143)
58 cd02971 PRX_family Peroxiredox 99.7 6.2E-16 1.3E-20 134.3 11.7 115 246-363 2-127 (140)
59 PRK10382 alkyl hydroperoxide r 99.7 7.6E-16 1.6E-20 139.5 12.6 119 242-363 4-136 (187)
60 cd02968 SCO SCO (an acronym fo 99.7 5.4E-16 1.2E-20 135.1 10.3 116 246-362 2-140 (142)
61 PRK13190 putative peroxiredoxi 99.7 1E-15 2.2E-20 141.1 12.3 138 243-393 5-154 (202)
62 cd02968 SCO SCO (an acronym fo 99.6 7E-16 1.5E-20 134.3 10.6 116 86-201 2-139 (142)
63 PRK13599 putative peroxiredoxi 99.6 1.3E-15 2.8E-20 141.3 11.9 140 241-392 3-155 (215)
64 cd03015 PRX_Typ2cys Peroxiredo 99.6 1.9E-15 4.1E-20 136.3 12.7 117 82-203 1-137 (173)
65 TIGR00385 dsbE periplasmic pro 99.6 4.2E-16 9.1E-21 140.5 8.1 117 81-203 35-155 (173)
66 PLN02919 haloacid dehalogenase 99.6 1.7E-15 3.7E-20 170.5 14.0 117 243-362 394-519 (1057)
67 TIGR03137 AhpC peroxiredoxin. 99.6 8.1E-16 1.7E-20 140.2 9.2 121 81-203 3-136 (187)
68 PRK09437 bcp thioredoxin-depen 99.6 1.1E-15 2.3E-20 135.2 9.7 115 82-202 6-136 (154)
69 cd02970 PRX_like2 Peroxiredoxi 99.6 2.2E-15 4.7E-20 132.3 11.4 113 246-362 2-146 (149)
70 cd03017 PRX_BCP Peroxiredoxin 99.6 1.2E-15 2.6E-20 132.5 9.6 115 85-203 2-127 (140)
71 cd02950 TxlA TRX-like protein 99.6 3.3E-15 7.1E-20 129.8 12.1 97 264-398 19-115 (142)
72 PTZ00256 glutathione peroxidas 99.6 1.7E-15 3.7E-20 137.7 10.1 118 83-203 17-165 (183)
73 PRK13728 conjugal transfer pro 99.6 4.7E-15 1E-19 131.8 12.6 94 246-360 55-151 (181)
74 PRK15000 peroxidase; Provision 99.6 3.7E-15 8.1E-20 136.9 12.4 139 242-392 4-161 (200)
75 cd03018 PRX_AhpE_like Peroxire 99.6 2.2E-15 4.9E-20 132.3 10.4 118 82-203 3-131 (149)
76 cd03016 PRX_1cys Peroxiredoxin 99.6 6.8E-15 1.5E-19 135.9 12.9 136 243-392 2-153 (203)
77 cd02966 TlpA_like_family TlpA- 99.6 4.3E-15 9.4E-20 123.5 10.5 109 91-202 5-114 (116)
78 KOG0191 Thioredoxin/protein di 99.6 1.4E-14 3.1E-19 147.1 16.3 207 104-395 46-254 (383)
79 PRK10382 alkyl hydroperoxide r 99.6 3.8E-15 8.1E-20 135.0 10.2 122 80-203 2-136 (187)
80 PRK13191 putative peroxiredoxi 99.6 7.6E-15 1.6E-19 136.2 12.2 138 242-392 9-160 (215)
81 TIGR02540 gpx7 putative glutat 99.6 5.3E-15 1.2E-19 130.6 10.3 113 88-203 4-137 (153)
82 cd02985 TRX_CDSP32 TRX family, 99.6 9.7E-15 2.1E-19 119.8 10.9 74 263-361 13-86 (103)
83 cd02971 PRX_family Peroxiredox 99.6 8.8E-15 1.9E-19 127.0 11.2 117 86-205 2-129 (140)
84 PTZ00137 2-Cys peroxiredoxin; 99.6 1.4E-14 3E-19 137.0 12.7 140 241-392 69-224 (261)
85 PLN02919 haloacid dehalogenase 99.6 1.4E-14 2.9E-19 163.2 14.5 121 80-203 391-520 (1057)
86 TIGR01130 ER_PDI_fam protein d 99.6 3.4E-13 7.3E-18 140.7 23.0 183 140-357 235-431 (462)
87 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 7.6E-15 1.6E-19 124.5 8.6 107 87-202 1-109 (123)
88 PTZ00253 tryparedoxin peroxida 99.6 2.2E-14 4.8E-19 132.2 12.3 138 242-392 8-163 (199)
89 cd02954 DIM1 Dim1 family; Dim1 99.6 1.8E-14 3.9E-19 118.5 10.2 71 265-362 14-84 (114)
90 PRK13190 putative peroxiredoxi 99.6 9.6E-15 2.1E-19 134.6 9.3 118 82-202 4-133 (202)
91 PRK13599 putative peroxiredoxi 99.6 1.1E-14 2.4E-19 135.0 9.2 121 81-203 3-136 (215)
92 cd02970 PRX_like2 Peroxiredoxi 99.5 1.7E-14 3.7E-19 126.5 9.5 114 86-203 2-147 (149)
93 TIGR01626 ytfJ_HI0045 conserve 99.5 1E-14 2.2E-19 130.5 7.6 115 82-204 25-165 (184)
94 PRK13189 peroxiredoxin; Provis 99.5 5.8E-14 1.3E-18 131.1 12.9 118 242-362 11-142 (222)
95 PHA02278 thioredoxin-like prot 99.5 4.3E-14 9.2E-19 115.3 10.2 76 264-362 13-88 (103)
96 cd02948 TRX_NDPK TRX domain, T 99.5 4.7E-14 1E-18 115.6 10.4 71 264-361 16-86 (102)
97 PRK10606 btuE putative glutath 99.5 8.5E-14 1.9E-18 125.4 12.4 81 246-330 5-94 (183)
98 COG1225 Bcp Peroxiredoxin [Pos 99.5 5.6E-14 1.2E-18 121.4 10.7 118 81-202 5-136 (157)
99 PRK15000 peroxidase; Provision 99.5 3.9E-14 8.4E-19 130.2 9.8 122 80-203 2-142 (200)
100 KOG0910 Thioredoxin-like prote 99.5 4.9E-14 1.1E-18 119.3 9.5 70 265-361 61-130 (150)
101 TIGR02738 TrbB type-F conjugat 99.5 6.9E-14 1.5E-18 122.3 10.1 86 255-360 44-133 (153)
102 PTZ00137 2-Cys peroxiredoxin; 99.5 8.4E-14 1.8E-18 131.7 10.5 122 80-203 68-205 (261)
103 PRK13728 conjugal transfer pro 99.5 5E-14 1.1E-18 125.3 7.9 95 85-200 54-151 (181)
104 cd02963 TRX_DnaJ TRX domain, D 99.5 1.9E-13 4E-18 113.8 10.8 72 264-361 23-94 (111)
105 PRK13191 putative peroxiredoxi 99.5 8.8E-14 1.9E-18 129.1 9.4 121 80-203 7-141 (215)
106 cd02999 PDI_a_ERp44_like PDIa 99.5 1E-13 2.2E-18 113.0 8.6 70 261-357 14-83 (100)
107 cd02956 ybbN ybbN protein fami 99.5 3.6E-13 7.7E-18 109.0 10.8 71 264-361 11-81 (96)
108 PTZ00253 tryparedoxin peroxida 99.5 2.6E-13 5.6E-18 125.1 10.5 121 81-203 7-144 (199)
109 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 3.4E-13 7.5E-18 110.2 9.8 81 254-361 7-87 (101)
110 KOG0907 Thioredoxin [Posttrans 99.5 2.5E-13 5.4E-18 110.9 8.5 69 265-361 21-89 (106)
111 cd03016 PRX_1cys Peroxiredoxin 99.5 2.5E-13 5.3E-18 125.5 9.5 119 82-203 1-134 (203)
112 cd02951 SoxW SoxW family; SoxW 99.4 1E-12 2.3E-17 111.8 11.5 86 264-362 12-102 (125)
113 PRK13189 peroxiredoxin; Provis 99.4 5.4E-13 1.2E-17 124.6 10.1 120 81-203 10-143 (222)
114 COG3118 Thioredoxin domain-con 99.4 5E-13 1.1E-17 125.2 9.7 70 265-361 43-112 (304)
115 cd03006 PDI_a_EFP1_N PDIa fami 99.4 9.3E-13 2E-17 109.3 10.3 71 264-361 28-99 (113)
116 PRK09381 trxA thioredoxin; Pro 99.4 1.6E-12 3.5E-17 107.8 10.8 70 265-361 21-90 (109)
117 cd02950 TxlA TRX-like protein 99.4 1.6E-12 3.5E-17 112.9 10.6 77 103-203 18-94 (142)
118 TIGR02738 TrbB type-F conjugat 99.4 8.1E-13 1.8E-17 115.6 7.7 87 95-200 44-133 (153)
119 PTZ00102 disulphide isomerase; 99.4 9.3E-12 2E-16 130.6 16.7 72 104-198 48-119 (477)
120 cd03000 PDI_a_TMX3 PDIa family 99.4 5.6E-12 1.2E-16 103.6 11.9 71 264-358 14-84 (104)
121 cd02953 DsbDgamma DsbD gamma f 99.4 3.5E-12 7.5E-17 104.8 10.0 76 264-361 10-89 (104)
122 cd02985 TRX_CDSP32 TRX family, 99.4 2E-12 4.4E-17 106.0 8.3 75 103-202 13-87 (103)
123 cd02994 PDI_a_TMX PDIa family, 99.4 5E-12 1.1E-16 103.3 10.6 69 263-358 15-83 (101)
124 PRK10996 thioredoxin 2; Provis 99.4 7.4E-12 1.6E-16 108.4 12.0 71 264-361 51-121 (139)
125 cd03005 PDI_a_ERp46 PDIa famil 99.4 4.2E-12 9.2E-17 103.7 9.8 71 267-361 18-88 (102)
126 cd02996 PDI_a_ERp44 PDIa famil 99.4 2.9E-12 6.2E-17 106.1 8.7 71 265-359 18-91 (108)
127 PTZ00062 glutaredoxin; Provisi 99.4 2.5E-12 5.5E-17 117.3 9.1 108 266-424 18-133 (204)
128 TIGR02740 TraF-like TraF-like 99.4 3.1E-12 6.7E-17 122.9 10.0 88 256-360 157-244 (271)
129 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 5.8E-12 1.3E-16 103.5 10.2 71 265-361 19-89 (104)
130 cd02959 ERp19 Endoplasmic reti 99.3 2.3E-12 4.9E-17 108.0 7.5 73 264-361 18-92 (117)
131 cd02962 TMX2 TMX2 family; comp 99.3 6.1E-12 1.3E-16 109.8 10.3 74 264-363 46-125 (152)
132 cd03013 PRX5_like Peroxiredoxi 99.3 6.7E-12 1.4E-16 110.8 10.7 115 244-362 3-137 (155)
133 cd02986 DLP Dim1 family, Dim1- 99.3 5.6E-12 1.2E-16 102.9 9.2 73 264-363 13-85 (114)
134 PRK10606 btuE putative glutath 99.3 5E-12 1.1E-16 113.9 9.2 73 85-160 4-84 (183)
135 cd03002 PDI_a_MPD1_like PDI fa 99.3 7.3E-12 1.6E-16 103.7 9.1 69 264-356 17-85 (109)
136 PLN00410 U5 snRNP protein, DIM 99.3 2E-11 4.3E-16 104.5 11.8 71 264-361 22-94 (142)
137 COG0450 AhpC Peroxiredoxin [Po 99.3 1.6E-11 3.4E-16 108.5 11.3 139 241-392 4-160 (194)
138 PF13098 Thioredoxin_2: Thiore 99.3 9.1E-12 2E-16 103.7 9.2 95 264-361 4-98 (112)
139 cd02993 PDI_a_APS_reductase PD 99.3 1E-11 2.2E-16 103.0 9.1 73 264-360 20-93 (109)
140 cd03065 PDI_b_Calsequestrin_N 99.3 1.1E-11 2.4E-16 103.6 9.0 72 265-361 27-102 (120)
141 cd02954 DIM1 Dim1 family; Dim1 99.3 1E-11 2.3E-16 102.2 8.5 73 104-203 13-85 (114)
142 KOG0908 Thioredoxin-like prote 99.3 6.9E-12 1.5E-16 113.6 8.0 88 264-394 20-107 (288)
143 PF00085 Thioredoxin: Thioredo 99.3 3.4E-11 7.4E-16 98.3 11.5 70 265-361 17-86 (103)
144 cd02984 TRX_PICOT TRX domain, 99.3 1.8E-11 4E-16 99.0 9.8 70 265-361 14-83 (97)
145 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.9E-11 4.2E-16 101.8 9.5 70 265-362 22-91 (113)
146 PTZ00443 Thioredoxin domain-co 99.3 3.5E-11 7.5E-16 111.7 12.0 70 265-361 52-121 (224)
147 cd02949 TRX_NTR TRX domain, no 99.3 4.2E-11 9.1E-16 97.0 10.6 71 264-361 12-82 (97)
148 cd02957 Phd_like Phosducin (Ph 99.3 1.5E-11 3.2E-16 102.7 8.0 69 265-362 24-92 (113)
149 cd02965 HyaE HyaE family; HyaE 99.3 2.2E-11 4.7E-16 99.6 8.6 72 264-362 26-99 (111)
150 TIGR01126 pdi_dom protein disu 99.3 4.3E-11 9.4E-16 97.5 10.3 71 264-358 12-82 (102)
151 cd02999 PDI_a_ERp44_like PDIa 99.3 1.7E-11 3.7E-16 99.8 7.7 69 101-195 14-82 (100)
152 cd02992 PDI_a_QSOX PDIa family 99.3 5.1E-11 1.1E-15 99.5 10.7 75 265-361 19-93 (114)
153 PF02630 SCO1-SenC: SCO1/SenC; 99.2 6.3E-11 1.4E-15 106.6 11.7 120 82-201 28-170 (174)
154 cd02997 PDI_a_PDIR PDIa family 99.2 6.4E-11 1.4E-15 97.0 10.8 75 264-361 16-90 (104)
155 cd02955 SSP411 TRX domain, SSP 99.2 2E-10 4.3E-15 96.8 12.9 105 264-392 14-121 (124)
156 PTZ00062 glutaredoxin; Provisi 99.2 1.1E-10 2.5E-15 106.5 12.1 61 106-202 18-78 (204)
157 KOG0910 Thioredoxin-like prote 99.2 3.5E-11 7.7E-16 102.1 7.8 71 105-202 61-131 (150)
158 KOG0191 Thioredoxin/protein di 99.2 1.2E-10 2.6E-15 118.4 13.1 260 10-353 86-352 (383)
159 PTZ00051 thioredoxin; Provisio 99.2 6.9E-11 1.5E-15 95.8 9.1 70 265-362 18-87 (98)
160 cd02956 ybbN ybbN protein fami 99.2 6.8E-11 1.5E-15 95.5 8.8 71 104-201 11-81 (96)
161 TIGR01068 thioredoxin thioredo 99.2 2E-10 4.4E-15 93.2 11.5 70 265-361 14-83 (101)
162 PHA02278 thioredoxin-like prot 99.2 4.9E-11 1.1E-15 97.3 7.6 77 104-203 13-89 (103)
163 cd02948 TRX_NDPK TRX domain, T 99.2 6.7E-11 1.4E-15 96.8 8.4 73 104-203 16-88 (102)
164 TIGR02187 GlrX_arch Glutaredox 99.2 1.1E-10 2.3E-15 109.0 10.9 130 265-431 19-157 (215)
165 cd03013 PRX5_like Peroxiredoxi 99.2 7.4E-11 1.6E-15 104.1 9.2 118 82-203 1-138 (155)
166 TIGR02740 TraF-like TraF-like 99.2 2E-11 4.2E-16 117.4 5.4 88 95-199 156-243 (271)
167 TIGR01130 ER_PDI_fam protein d 99.2 5.8E-10 1.2E-14 116.4 16.9 70 104-196 17-86 (462)
168 TIGR01295 PedC_BrcD bacterioci 99.2 1.8E-10 3.8E-15 97.2 10.5 77 265-362 23-106 (122)
169 cd02963 TRX_DnaJ TRX domain, D 99.2 8.3E-11 1.8E-15 97.8 8.2 74 103-202 22-95 (111)
170 COG0450 AhpC Peroxiredoxin [Po 99.2 1.1E-10 2.4E-15 103.1 9.0 122 79-202 2-140 (194)
171 PF02630 SCO1-SenC: SCO1/SenC; 99.2 3.1E-10 6.8E-15 102.1 11.8 119 244-362 30-171 (174)
172 cd02951 SoxW SoxW family; SoxW 99.2 8.4E-11 1.8E-15 100.0 7.4 87 104-203 12-103 (125)
173 cd02952 TRP14_like Human TRX-r 99.2 1.1E-10 2.3E-15 97.3 7.8 78 264-360 20-105 (119)
174 cd03001 PDI_a_P5 PDIa family, 99.1 3.8E-10 8.3E-15 92.2 10.8 65 265-355 18-82 (103)
175 cd02987 Phd_like_Phd Phosducin 99.1 2E-10 4.3E-15 103.2 9.5 69 265-362 83-151 (175)
176 cd02998 PDI_a_ERp38 PDIa famil 99.1 3.1E-10 6.7E-15 93.0 9.8 72 265-359 18-89 (105)
177 cd03003 PDI_a_ERdj5_N PDIa fam 99.1 1.5E-10 3.4E-15 94.4 7.7 69 104-199 17-85 (101)
178 cd02975 PfPDO_like_N Pyrococcu 99.1 6.6E-10 1.4E-14 92.6 11.0 63 265-354 22-84 (113)
179 cd02953 DsbDgamma DsbD gamma f 99.1 3.4E-10 7.4E-15 92.9 9.1 77 104-202 10-90 (104)
180 cd02961 PDI_a_family Protein D 99.1 3E-10 6.6E-15 91.8 8.0 74 264-361 14-87 (101)
181 cd03006 PDI_a_EFP1_N PDIa fami 99.1 4.3E-10 9.4E-15 93.3 8.5 68 104-198 28-96 (113)
182 cd02962 TMX2 TMX2 family; comp 99.1 6.1E-10 1.3E-14 97.2 9.2 75 104-204 46-126 (152)
183 cd03004 PDI_a_ERdj5_C PDIa fam 99.1 7E-10 1.5E-14 91.0 8.9 71 105-201 19-89 (104)
184 cd03000 PDI_a_TMX3 PDIa family 99.1 7E-10 1.5E-14 91.1 8.8 67 104-193 14-80 (104)
185 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 4.8E-10 1E-14 91.7 7.4 67 265-356 18-84 (104)
186 PF13098 Thioredoxin_2: Thiore 99.1 3.5E-10 7.5E-15 94.1 6.7 95 104-201 4-98 (112)
187 KOG0907 Thioredoxin [Posttrans 99.0 7E-10 1.5E-14 90.6 8.1 70 105-202 21-90 (106)
188 cd02986 DLP Dim1 family, Dim1- 99.0 8.1E-10 1.8E-14 90.3 8.3 72 104-202 13-84 (114)
189 TIGR00424 APS_reduc 5'-adenyly 99.0 8.5E-10 1.8E-14 112.6 10.3 71 263-357 369-439 (463)
190 cd02988 Phd_like_VIAF Phosduci 99.0 8E-10 1.7E-14 100.6 9.0 67 265-362 102-168 (192)
191 cd03002 PDI_a_MPD1_like PDI fa 99.0 8.5E-10 1.8E-14 91.2 8.0 70 104-197 17-86 (109)
192 PRK09381 trxA thioredoxin; Pro 99.0 9.4E-10 2E-14 91.1 8.3 71 105-202 21-91 (109)
193 KOG0190 Protein disulfide isom 99.0 7.4E-10 1.6E-14 112.3 8.9 113 247-398 24-137 (493)
194 cd03005 PDI_a_ERp46 PDIa famil 99.0 7E-10 1.5E-14 90.5 7.0 70 107-200 18-87 (102)
195 cd02993 PDI_a_APS_reductase PD 99.0 1.4E-09 3E-14 90.1 8.7 71 104-198 20-91 (109)
196 cd02959 ERp19 Endoplasmic reti 99.0 6E-10 1.3E-14 93.3 6.5 75 103-202 17-93 (117)
197 cd02994 PDI_a_TMX PDIa family, 99.0 1.6E-09 3.4E-14 88.4 8.6 68 104-198 16-83 (101)
198 COG0386 BtuE Glutathione perox 99.0 6E-09 1.3E-13 88.1 11.5 114 247-363 6-144 (162)
199 COG3118 Thioredoxin domain-con 99.0 9.8E-10 2.1E-14 103.3 7.5 71 104-201 42-112 (304)
200 PRK10996 thioredoxin 2; Provis 99.0 1.9E-09 4.1E-14 93.4 8.6 72 104-202 51-122 (139)
201 cd02996 PDI_a_ERp44 PDIa famil 99.0 2.6E-09 5.7E-14 88.2 9.1 71 105-199 18-91 (108)
202 COG1999 Uncharacterized protei 99.0 1.1E-08 2.3E-13 94.4 13.7 134 248-395 49-206 (207)
203 cd02960 AGR Anterior Gradient 99.0 2.8E-09 6E-14 89.8 8.7 99 264-393 22-123 (130)
204 TIGR00411 redox_disulf_1 small 99.0 7.7E-09 1.7E-13 80.7 10.5 62 268-358 2-63 (82)
205 PLN02309 5'-adenylylsulfate re 99.0 3.3E-09 7E-14 108.3 10.6 68 264-355 364-432 (457)
206 COG1999 Uncharacterized protei 99.0 8.9E-09 1.9E-13 95.0 12.4 115 88-202 49-187 (207)
207 cd02949 TRX_NTR TRX domain, no 98.9 3.8E-09 8.2E-14 85.5 8.6 72 104-202 12-83 (97)
208 cd02947 TRX_family TRX family; 98.9 7.7E-09 1.7E-13 81.9 10.1 69 265-361 10-78 (93)
209 PLN00410 U5 snRNP protein, DIM 98.9 3.1E-09 6.7E-14 91.0 8.1 72 104-201 22-94 (142)
210 cd02952 TRP14_like Human TRX-r 98.9 2.4E-09 5.3E-14 89.2 7.0 80 104-202 20-107 (119)
211 cd02992 PDI_a_QSOX PDIa family 98.9 6.2E-09 1.4E-13 86.9 9.1 71 105-196 19-89 (114)
212 KOG0912 Thiol-disulfide isomer 98.9 5E-09 1.1E-13 97.8 8.8 95 265-394 13-107 (375)
213 PRK00293 dipZ thiol:disulfide 98.9 6.5E-09 1.4E-13 110.5 10.8 76 262-360 471-549 (571)
214 PTZ00051 thioredoxin; Provisio 98.9 5.7E-09 1.2E-13 84.5 7.7 71 105-203 18-88 (98)
215 cd02984 TRX_PICOT TRX domain, 98.9 7.1E-09 1.5E-13 83.7 8.1 71 105-202 14-84 (97)
216 TIGR01126 pdi_dom protein disu 98.9 8.3E-09 1.8E-13 83.9 8.3 70 104-197 12-81 (102)
217 cd02965 HyaE HyaE family; HyaE 98.9 8E-09 1.7E-13 84.5 8.0 73 104-203 26-100 (111)
218 KOG2792 Putative cytochrome C 98.9 1.1E-07 2.3E-12 87.3 15.5 114 90-203 124-259 (280)
219 KOG2792 Putative cytochrome C 98.9 1.9E-08 4.2E-13 92.1 10.6 135 247-395 120-277 (280)
220 PTZ00443 Thioredoxin domain-co 98.8 1.2E-08 2.6E-13 94.8 9.3 69 105-200 52-120 (224)
221 cd02982 PDI_b'_family Protein 98.8 1.6E-08 3.4E-13 82.7 9.0 64 265-354 12-77 (103)
222 cd02997 PDI_a_PDIR PDIa family 98.8 1.3E-08 2.9E-13 83.1 8.0 74 104-200 16-89 (104)
223 cd02955 SSP411 TRX domain, SSP 98.8 2.8E-08 6.1E-13 83.7 9.7 82 104-203 14-98 (124)
224 cd02957 Phd_like Phosducin (Ph 98.8 1.2E-08 2.7E-13 85.0 7.4 69 105-202 24-92 (113)
225 cd03001 PDI_a_P5 PDIa family, 98.8 1.8E-08 3.9E-13 82.2 8.2 65 105-195 18-82 (103)
226 TIGR01068 thioredoxin thioredo 98.8 2E-08 4.3E-13 81.4 8.3 70 105-201 14-83 (101)
227 cd02989 Phd_like_TxnDC9 Phosdu 98.8 2.3E-08 5E-13 83.3 8.8 71 104-202 21-91 (113)
228 cd02998 PDI_a_ERp38 PDIa famil 98.8 2.3E-08 5E-13 81.8 8.6 70 105-197 18-87 (105)
229 cd03065 PDI_b_Calsequestrin_N 98.8 2E-08 4.3E-13 84.0 7.7 70 106-200 28-101 (120)
230 KOG4277 Uncharacterized conser 98.8 5.3E-09 1.1E-13 97.2 4.3 91 245-361 25-115 (468)
231 PF00085 Thioredoxin: Thioredo 98.8 3.5E-08 7.7E-13 80.3 8.7 69 105-200 17-85 (103)
232 PHA02125 thioredoxin-like prot 98.8 4.1E-08 8.8E-13 75.4 8.1 57 269-361 2-58 (75)
233 cd02961 PDI_a_family Protein D 98.7 4.3E-08 9.4E-13 79.0 8.6 69 105-197 15-83 (101)
234 cd02975 PfPDO_like_N Pyrococcu 98.7 4.3E-08 9.3E-13 81.6 8.6 63 106-195 23-85 (113)
235 cd02958 UAS UAS family; UAS is 98.7 1.5E-07 3.3E-12 78.5 11.8 74 264-361 16-93 (114)
236 TIGR00412 redox_disulf_2 small 98.7 3.4E-08 7.4E-13 76.0 6.6 61 269-361 2-62 (76)
237 cd02973 TRX_GRX_like Thioredox 98.7 9E-08 2E-12 71.6 7.7 63 269-361 3-65 (67)
238 KOG0855 Alkyl hydroperoxide re 98.7 6.7E-08 1.5E-12 82.4 7.6 116 237-356 60-185 (211)
239 cd03007 PDI_a_ERp29_N PDIa fam 98.6 7E-08 1.5E-12 79.8 6.8 71 264-357 17-91 (116)
240 cd02995 PDI_a_PDI_a'_C PDIa fa 98.6 1.5E-07 3.2E-12 76.8 8.3 67 105-196 18-84 (104)
241 cd02987 Phd_like_Phd Phosducin 98.6 1E-07 2.3E-12 85.6 7.9 69 105-202 83-151 (175)
242 TIGR01295 PedC_BrcD bacterioci 98.6 1.5E-07 3.2E-12 79.4 8.3 81 105-203 23-107 (122)
243 TIGR00424 APS_reduc 5'-adenyly 98.6 1.1E-07 2.3E-12 97.4 8.7 69 104-195 370-438 (463)
244 KOG0852 Alkyl hydroperoxide re 98.6 2.6E-07 5.7E-12 79.6 9.0 118 82-201 6-139 (196)
245 KOG1651 Glutathione peroxidase 98.5 5.6E-07 1.2E-11 77.3 9.3 115 247-363 15-153 (171)
246 TIGR00411 redox_disulf_1 small 98.5 4.9E-07 1.1E-11 70.4 8.0 58 108-191 2-59 (82)
247 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 5.3E-07 1.1E-11 71.5 7.5 71 261-361 8-78 (89)
248 PF13728 TraF: F plasmid trans 98.5 8.9E-07 1.9E-11 82.2 10.0 81 263-360 118-198 (215)
249 PF13899 Thioredoxin_7: Thiore 98.5 3.6E-07 7.8E-12 71.4 6.0 43 264-309 16-61 (82)
250 KOG0908 Thioredoxin-like prote 98.5 2.3E-07 5E-12 84.6 5.4 69 101-197 17-85 (288)
251 PLN02309 5'-adenylylsulfate re 98.4 6.3E-07 1.4E-11 91.7 8.8 68 104-195 364-432 (457)
252 PRK00293 dipZ thiol:disulfide 98.4 6.1E-07 1.3E-11 95.5 8.8 74 103-199 472-548 (571)
253 KOG0852 Alkyl hydroperoxide re 98.4 1.5E-06 3.3E-11 75.1 9.4 111 250-362 18-140 (196)
254 cd02947 TRX_family TRX family; 98.4 1.1E-06 2.4E-11 69.3 7.6 67 106-200 11-77 (93)
255 cd02988 Phd_like_VIAF Phosduci 98.4 1.4E-06 2.9E-11 79.5 9.0 68 105-203 102-169 (192)
256 TIGR03143 AhpF_homolog putativ 98.4 2E-05 4.3E-10 84.2 19.2 176 102-361 363-542 (555)
257 KOG1731 FAD-dependent sulfhydr 98.4 3.1E-07 6.8E-12 93.2 4.7 71 266-357 58-128 (606)
258 smart00594 UAS UAS domain. 98.4 3.5E-06 7.6E-11 71.2 10.2 69 264-356 26-97 (122)
259 cd02982 PDI_b'_family Protein 98.4 1.4E-06 3E-11 71.0 7.4 65 105-195 12-78 (103)
260 KOG0855 Alkyl hydroperoxide re 98.3 2E-06 4.4E-11 73.4 7.8 110 81-196 64-185 (211)
261 TIGR02739 TraF type-F conjugat 98.3 3.7E-06 8E-11 79.5 10.3 102 263-394 148-249 (256)
262 PF00255 GSHPx: Glutathione pe 98.3 3.2E-06 7E-11 69.0 8.6 60 248-310 3-63 (108)
263 cd02973 TRX_GRX_like Thioredox 98.3 3.4E-06 7.3E-11 63.0 7.6 62 109-200 3-64 (67)
264 TIGR00412 redox_disulf_2 small 98.3 3E-06 6.5E-11 65.1 7.1 59 110-200 3-61 (76)
265 PF07649 C1_3: C1-like domain; 98.3 2.1E-07 4.6E-12 57.5 0.4 28 418-445 2-30 (30)
266 PRK13703 conjugal pilus assemb 98.2 6.2E-06 1.4E-10 77.5 10.0 102 264-395 142-243 (248)
267 PF03190 Thioredox_DsbH: Prote 98.2 6.9E-06 1.5E-10 71.8 9.2 111 264-399 36-150 (163)
268 cd02960 AGR Anterior Gradient 98.2 6.6E-06 1.4E-10 69.4 8.5 93 104-227 22-117 (130)
269 COG0386 BtuE Glutathione perox 98.2 8.2E-06 1.8E-10 69.4 8.8 114 87-203 6-144 (162)
270 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 6.2E-06 1.3E-10 65.3 7.3 71 101-201 8-78 (89)
271 PF14595 Thioredoxin_9: Thiore 98.2 5.4E-06 1.2E-10 70.5 7.1 74 263-363 39-115 (129)
272 cd02958 UAS UAS family; UAS is 98.2 1.1E-05 2.5E-10 67.1 8.7 75 104-202 16-94 (114)
273 KOG4277 Uncharacterized conser 98.2 1.6E-05 3.5E-10 74.4 10.4 178 106-328 44-236 (468)
274 COG0526 TrxA Thiol-disulfide i 98.1 9.1E-06 2E-10 66.7 7.7 72 260-358 27-101 (127)
275 PHA02125 thioredoxin-like prot 98.1 7.1E-06 1.5E-10 62.8 6.1 50 109-190 2-51 (75)
276 COG2077 Tpx Peroxiredoxin [Pos 98.1 5.1E-05 1.1E-09 64.3 11.0 116 243-363 21-148 (158)
277 COG2143 Thioredoxin-related pr 98.1 9.5E-05 2.1E-09 62.9 12.6 84 264-361 41-131 (182)
278 KOG1651 Glutathione peroxidase 98.1 2.1E-05 4.5E-10 67.8 8.6 116 86-203 14-153 (171)
279 cd01659 TRX_superfamily Thiore 98.0 2.5E-05 5.4E-10 56.4 7.8 63 269-355 1-63 (69)
280 PF13728 TraF: F plasmid trans 98.0 1.1E-05 2.4E-10 74.9 6.9 83 100-199 115-197 (215)
281 PF13899 Thioredoxin_7: Thiore 97.9 2.8E-05 6E-10 60.6 6.3 43 104-149 16-61 (82)
282 KOG0854 Alkyl hydroperoxide re 97.9 0.00012 2.7E-09 63.3 10.6 140 242-393 8-168 (224)
283 PF00255 GSHPx: Glutathione pe 97.9 5.2E-05 1.1E-09 61.9 7.9 58 90-150 6-63 (108)
284 KOG0911 Glutaredoxin-related p 97.9 9.4E-06 2E-10 73.5 3.0 125 264-424 16-156 (227)
285 TIGR02739 TraF type-F conjugat 97.8 3.2E-05 7E-10 73.1 6.5 84 100-200 145-228 (256)
286 cd01659 TRX_superfamily Thiore 97.8 8.2E-05 1.8E-09 53.6 7.4 63 109-195 1-63 (69)
287 smart00594 UAS UAS domain. 97.8 9E-05 2E-09 62.5 8.5 69 104-196 26-97 (122)
288 PF03107 C1_2: C1 domain; Int 97.8 1.3E-05 2.7E-10 49.4 2.1 29 417-445 1-30 (30)
289 PRK11509 hydrogenase-1 operon 97.8 0.00028 6E-09 59.7 10.8 80 276-395 47-126 (132)
290 PF00837 T4_deiodinase: Iodoth 97.8 0.0001 2.2E-09 68.1 8.5 121 241-366 74-221 (237)
291 COG2077 Tpx Peroxiredoxin [Pos 97.8 0.00029 6.3E-09 59.8 10.3 122 81-207 19-152 (158)
292 cd03007 PDI_a_ERp29_N PDIa fam 97.8 0.00016 3.5E-09 59.9 8.5 71 104-194 17-89 (116)
293 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00021 4.5E-09 53.8 8.7 56 269-352 2-57 (74)
294 PF06110 DUF953: Eukaryotic pr 97.7 0.00018 4E-09 59.8 8.6 77 265-360 19-104 (119)
295 PRK13703 conjugal pilus assemb 97.7 5.3E-05 1.2E-09 71.2 6.0 82 100-198 138-219 (248)
296 COG4232 Thiol:disulfide interc 97.7 5.3E-05 1.2E-09 78.2 6.4 76 264-360 473-549 (569)
297 TIGR02200 GlrX_actino Glutared 97.7 0.00015 3.2E-09 55.4 7.5 63 269-361 2-65 (77)
298 KOG1731 FAD-dependent sulfhydr 97.7 0.00014 3.1E-09 74.4 9.0 69 106-195 58-126 (606)
299 COG0526 TrxA Thiol-disulfide i 97.7 0.00015 3.2E-09 59.3 7.7 48 99-149 26-73 (127)
300 KOG0912 Thiol-disulfide isomer 97.6 0.00023 4.9E-09 67.2 8.5 76 105-202 13-88 (375)
301 KOG0854 Alkyl hydroperoxide re 97.6 0.00029 6.2E-09 61.1 7.8 120 82-203 8-148 (224)
302 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00015 3.2E-09 56.5 5.4 65 269-359 1-65 (84)
303 cd02991 UAS_ETEA UAS family, E 97.5 0.0011 2.5E-08 55.2 10.8 71 264-361 16-95 (116)
304 PF14595 Thioredoxin_9: Thiore 97.5 0.0001 2.2E-09 62.7 3.9 76 104-203 40-115 (129)
305 PRK11657 dsbG disulfide isomer 97.5 0.0023 5.1E-08 61.0 13.7 93 264-361 116-235 (251)
306 KOG0914 Thioredoxin-like prote 97.4 0.00023 5E-09 63.9 5.4 91 265-383 144-241 (265)
307 TIGR02180 GRX_euk Glutaredoxin 97.2 0.00086 1.9E-08 52.1 6.0 60 109-191 1-60 (84)
308 KOG3425 Uncharacterized conser 97.2 0.001 2.2E-08 54.1 6.2 72 265-355 25-105 (128)
309 PF06110 DUF953: Eukaryotic pr 97.2 0.0017 3.6E-08 54.0 7.5 78 104-200 18-104 (119)
310 PRK11200 grxA glutaredoxin 1; 97.1 0.0034 7.5E-08 49.1 8.8 66 269-360 3-70 (85)
311 PF13192 Thioredoxin_3: Thiore 97.1 0.0068 1.5E-07 46.3 9.7 59 272-362 5-63 (76)
312 PRK10877 protein disulfide iso 97.1 0.0057 1.2E-07 57.6 11.0 88 264-359 106-214 (232)
313 PF00462 Glutaredoxin: Glutare 97.1 0.0033 7.1E-08 45.6 7.4 59 269-358 1-59 (60)
314 COG2143 Thioredoxin-related pr 97.1 0.0038 8.1E-08 53.4 8.6 87 103-201 40-131 (182)
315 TIGR02196 GlrX_YruB Glutaredox 97.0 0.0029 6.3E-08 47.4 7.0 55 109-191 2-56 (74)
316 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0067 1.4E-07 55.7 9.7 88 265-359 77-184 (197)
317 PF02114 Phosducin: Phosducin; 96.9 0.0038 8.3E-08 59.7 8.3 69 265-362 146-214 (265)
318 PRK15317 alkyl hydroperoxide r 96.8 0.082 1.8E-06 56.2 18.4 69 263-361 114-182 (517)
319 PF03190 Thioredox_DsbH: Prote 96.8 0.0034 7.3E-08 55.1 6.4 79 105-202 37-119 (163)
320 COG4232 Thiol:disulfide interc 96.7 0.0028 6.1E-08 65.8 6.0 75 104-199 473-548 (569)
321 KOG0911 Glutaredoxin-related p 96.7 0.01 2.3E-07 54.1 8.7 62 104-192 16-77 (227)
322 TIGR02200 GlrX_actino Glutared 96.6 0.011 2.5E-07 44.7 7.5 63 109-201 2-65 (77)
323 cd02972 DsbA_family DsbA famil 96.6 0.0068 1.5E-07 47.9 6.4 81 269-353 1-91 (98)
324 TIGR03143 AhpF_homolog putativ 96.6 0.026 5.7E-07 60.4 12.8 137 3-201 397-542 (555)
325 cd02991 UAS_ETEA UAS family, E 96.6 0.0074 1.6E-07 50.3 6.7 67 104-195 16-86 (116)
326 TIGR03140 AhpF alkyl hydropero 96.5 0.16 3.6E-06 53.8 18.4 68 263-360 115-182 (515)
327 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.013 2.8E-07 45.1 7.1 63 269-359 2-64 (82)
328 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.017 3.6E-07 43.0 7.5 55 269-351 2-56 (73)
329 cd02066 GRX_family Glutaredoxi 96.2 0.029 6.3E-07 41.5 7.8 61 269-360 2-62 (72)
330 PRK11657 dsbG disulfide isomer 96.2 0.021 4.6E-07 54.5 8.6 91 103-198 115-232 (251)
331 PF13848 Thioredoxin_6: Thiore 96.2 0.13 2.9E-06 46.0 13.5 130 175-358 31-164 (184)
332 PF05988 DUF899: Bacterial pro 96.1 0.064 1.4E-06 48.8 10.7 111 247-361 47-170 (211)
333 cd03020 DsbA_DsbC_DsbG DsbA fa 96.1 0.038 8.2E-07 50.7 9.4 89 104-199 76-184 (197)
334 COG1331 Highly conserved prote 96.0 0.026 5.6E-07 59.8 8.6 79 265-362 43-125 (667)
335 PF00837 T4_deiodinase: Iodoth 96.0 0.018 3.9E-07 53.4 6.5 67 80-147 73-143 (237)
336 TIGR02190 GlrX-dom Glutaredoxi 95.9 0.028 6E-07 43.3 6.3 62 266-359 7-68 (79)
337 PF04592 SelP_N: Selenoprotein 95.9 0.1 2.2E-06 48.2 10.6 103 258-361 19-125 (238)
338 PRK10877 protein disulfide iso 95.8 0.055 1.2E-06 51.0 9.4 88 104-199 106-214 (232)
339 PF00462 Glutaredoxin: Glutare 95.5 0.056 1.2E-06 39.0 6.3 55 109-191 1-55 (60)
340 PHA03050 glutaredoxin; Provisi 95.5 0.025 5.4E-07 46.5 4.8 66 269-359 15-80 (108)
341 PRK10329 glutaredoxin-like pro 95.5 0.16 3.5E-06 39.2 9.1 54 269-351 3-56 (81)
342 PF09695 YtfJ_HI0045: Bacteria 95.4 0.37 8E-06 41.9 11.9 123 253-390 25-158 (160)
343 PF13192 Thioredoxin_3: Thiore 95.3 0.078 1.7E-06 40.4 6.8 58 113-202 6-63 (76)
344 KOG0914 Thioredoxin-like prote 95.3 0.05 1.1E-06 49.3 6.3 92 105-224 144-242 (265)
345 TIGR02181 GRX_bact Glutaredoxi 95.2 0.052 1.1E-06 41.6 5.8 59 270-359 2-60 (79)
346 cd03029 GRX_hybridPRX5 Glutare 95.2 0.072 1.6E-06 40.0 6.4 59 269-359 3-61 (72)
347 cd03418 GRX_GRXb_1_3_like Glut 95.2 0.081 1.8E-06 39.9 6.7 60 269-359 2-62 (75)
348 cd02972 DsbA_family DsbA famil 95.2 0.091 2E-06 41.2 7.4 80 109-193 1-91 (98)
349 cd03419 GRX_GRXh_1_2_like Glut 95.1 0.07 1.5E-06 40.9 6.2 58 109-191 2-59 (82)
350 TIGR02183 GRXA Glutaredoxin, G 95.0 0.049 1.1E-06 42.7 5.1 39 269-311 2-40 (86)
351 PF05988 DUF899: Bacterial pro 95.0 0.17 3.6E-06 46.2 9.0 110 88-201 48-171 (211)
352 cd03027 GRX_DEP Glutaredoxin ( 94.9 0.11 2.4E-06 39.1 6.6 61 269-360 3-63 (73)
353 TIGR02189 GlrX-like_plant Glut 94.9 0.11 2.5E-06 41.8 6.9 63 269-359 10-72 (99)
354 PF11009 DUF2847: Protein of u 94.8 0.2 4.4E-06 40.6 8.2 75 265-362 19-94 (105)
355 TIGR02194 GlrX_NrdH Glutaredox 94.8 0.1 2.2E-06 39.2 6.1 53 270-351 2-54 (72)
356 PF05176 ATP-synt_10: ATP10 pr 94.7 0.34 7.4E-06 46.1 10.8 128 247-390 102-250 (252)
357 PRK11200 grxA glutaredoxin 1; 94.7 0.09 2E-06 40.9 5.7 39 109-151 3-41 (85)
358 KOG3425 Uncharacterized conser 94.6 0.068 1.5E-06 43.8 4.8 71 105-194 25-104 (128)
359 cd03023 DsbA_Com1_like DsbA fa 94.5 0.066 1.4E-06 46.4 5.3 40 265-308 5-44 (154)
360 PRK10638 glutaredoxin 3; Provi 94.5 0.2 4.4E-06 38.7 7.4 61 269-360 4-64 (83)
361 cd03028 GRX_PICOT_like Glutare 94.4 0.16 3.4E-06 40.1 6.7 65 264-359 6-74 (90)
362 TIGR00365 monothiol glutaredox 94.4 0.16 3.5E-06 40.8 6.7 64 265-359 11-78 (97)
363 COG4312 Uncharacterized protei 94.4 0.19 4E-06 45.7 7.6 93 247-343 53-153 (247)
364 KOG1672 ATP binding protein [P 94.3 0.088 1.9E-06 47.0 5.4 70 264-361 83-152 (211)
365 PRK11509 hydrogenase-1 operon 94.1 0.35 7.5E-06 41.1 8.3 60 117-202 48-107 (132)
366 cd02976 NrdH NrdH-redoxin (Nrd 94.0 0.22 4.7E-06 36.8 6.5 55 109-191 2-56 (73)
367 PF13462 Thioredoxin_4: Thiore 94.0 0.21 4.6E-06 43.7 7.4 46 263-309 10-55 (162)
368 cd02340 ZZ_NBR1_like Zinc fing 93.9 0.034 7.3E-07 37.3 1.6 30 418-447 2-32 (43)
369 COG0678 AHP1 Peroxiredoxin [Po 93.8 0.43 9.2E-06 40.9 8.3 96 263-362 35-145 (165)
370 PF13848 Thioredoxin_6: Thiore 93.7 0.65 1.4E-05 41.5 10.3 67 105-197 94-163 (184)
371 KOG3414 Component of the U4/U6 93.2 0.52 1.1E-05 39.0 7.6 62 265-352 23-84 (142)
372 cd03023 DsbA_Com1_like DsbA fa 92.9 0.2 4.3E-06 43.3 5.3 39 104-146 4-42 (154)
373 KOG2603 Oligosaccharyltransfer 92.7 0.95 2.1E-05 43.6 9.8 77 262-359 57-141 (331)
374 TIGR02189 GlrX-like_plant Glut 92.7 0.43 9.3E-06 38.4 6.6 58 109-191 10-67 (99)
375 KOG0913 Thiol-disulfide isomer 92.6 0.026 5.6E-07 51.8 -0.7 69 267-361 41-109 (248)
376 PHA03050 glutaredoxin; Provisi 92.4 0.26 5.7E-06 40.4 5.0 66 109-199 15-80 (108)
377 PF04592 SelP_N: Selenoprotein 92.1 0.51 1.1E-05 43.6 6.9 104 97-202 18-126 (238)
378 COG0695 GrxC Glutaredoxin and 91.9 0.82 1.8E-05 35.2 6.9 20 269-288 3-22 (80)
379 cd02339 ZZ_Mind_bomb Zinc fing 91.9 0.1 2.2E-06 35.3 1.6 29 418-446 2-32 (45)
380 cd03019 DsbA_DsbA DsbA family, 91.8 0.21 4.6E-06 44.5 4.2 41 264-307 14-54 (178)
381 PF13462 Thioredoxin_4: Thiore 91.7 0.55 1.2E-05 41.0 6.8 51 99-150 6-56 (162)
382 KOG1752 Glutaredoxin and relat 91.6 0.86 1.9E-05 37.0 7.0 63 269-359 16-78 (104)
383 cd02983 P5_C P5 family, C-term 91.3 1.5 3.2E-05 37.3 8.6 76 282-396 41-118 (130)
384 TIGR02190 GlrX-dom Glutaredoxi 91.2 0.67 1.5E-05 35.4 5.9 60 108-199 9-68 (79)
385 TIGR02183 GRXA Glutaredoxin, G 91.0 0.57 1.2E-05 36.5 5.4 38 109-150 2-39 (86)
386 PRK10824 glutaredoxin-4; Provi 90.8 0.43 9.3E-06 39.5 4.6 26 265-290 14-43 (115)
387 COG1331 Highly conserved prote 90.6 1 2.3E-05 48.1 8.3 77 105-200 43-123 (667)
388 COG4545 Glutaredoxin-related p 90.4 1 2.2E-05 33.6 5.8 73 270-360 5-77 (85)
389 PF02966 DIM1: Mitosis protein 89.9 2.1 4.6E-05 35.9 8.0 70 265-361 20-89 (133)
390 PF05768 DUF836: Glutaredoxin- 89.8 1.2 2.7E-05 34.2 6.3 56 269-353 2-57 (81)
391 PRK10329 glutaredoxin-like pro 89.7 1.3 2.8E-05 34.2 6.3 54 109-191 3-56 (81)
392 PF01216 Calsequestrin: Calseq 89.4 2.5 5.4E-05 41.5 9.2 103 252-394 38-145 (383)
393 PF09695 YtfJ_HI0045: Bacteria 89.2 3.4 7.4E-05 36.0 8.9 103 96-202 28-141 (160)
394 TIGR02194 GlrX_NrdH Glutaredox 89.0 1.4 3.1E-05 32.8 6.0 53 110-191 2-54 (72)
395 cd03029 GRX_hybridPRX5 Glutare 88.9 1.4 3.1E-05 32.7 5.9 54 109-191 3-56 (72)
396 PF00130 C1_1: Phorbol esters/ 88.7 0.35 7.6E-06 33.8 2.3 36 414-449 9-47 (53)
397 COG4312 Uncharacterized protei 88.7 2.6 5.7E-05 38.5 8.2 92 88-183 54-153 (247)
398 cd03031 GRX_GRX_like Glutaredo 88.5 8.5 0.00018 33.4 11.1 15 276-290 15-29 (147)
399 cd02066 GRX_family Glutaredoxi 88.5 0.76 1.6E-05 33.6 4.2 55 109-191 2-56 (72)
400 PF13778 DUF4174: Domain of un 88.5 5.1 0.00011 33.3 9.5 90 260-362 3-95 (118)
401 cd03418 GRX_GRXb_1_3_like Glut 88.2 1.1 2.4E-05 33.5 4.9 55 109-191 2-57 (75)
402 TIGR02181 GRX_bact Glutaredoxi 87.9 0.79 1.7E-05 34.8 4.0 54 110-191 2-55 (79)
403 cd03028 GRX_PICOT_like Glutare 87.4 1.7 3.6E-05 34.2 5.6 60 104-191 6-69 (90)
404 cd03027 GRX_DEP Glutaredoxin ( 87.2 1.4 3E-05 32.9 5.0 54 110-191 4-57 (73)
405 cd03019 DsbA_DsbA DsbA family, 87.1 0.9 2E-05 40.4 4.5 40 104-146 14-53 (178)
406 PF11009 DUF2847: Protein of u 87.0 3.4 7.4E-05 33.5 7.2 75 105-202 19-94 (105)
407 PRK12759 bifunctional gluaredo 86.8 1.1 2.4E-05 46.0 5.4 63 269-351 4-66 (410)
408 PF02114 Phosducin: Phosducin; 86.3 1.2 2.6E-05 42.7 5.1 71 104-203 145-215 (265)
409 PF05176 ATP-synt_10: ATP10 pr 86.3 3.5 7.6E-05 39.3 8.1 117 84-203 99-234 (252)
410 PRK10954 periplasmic protein d 86.0 0.77 1.7E-05 42.4 3.5 33 264-296 36-71 (207)
411 COG0695 GrxC Glutaredoxin and 85.2 3.7 7.9E-05 31.5 6.4 57 109-191 3-59 (80)
412 COG0678 AHP1 Peroxiredoxin [Po 85.0 2.1 4.5E-05 36.8 5.2 117 81-203 4-146 (165)
413 cd00029 C1 Protein kinase C co 84.8 0.7 1.5E-05 31.6 2.0 35 415-449 10-47 (50)
414 TIGR00365 monothiol glutaredox 84.6 2.7 5.8E-05 33.6 5.6 58 106-191 12-73 (97)
415 KOG3414 Component of the U4/U6 84.2 5.9 0.00013 33.0 7.3 62 105-192 23-84 (142)
416 PF13831 PHD_2: PHD-finger; PD 84.0 0.29 6.2E-06 31.4 -0.2 18 430-447 4-21 (36)
417 cd03073 PDI_b'_ERp72_ERp57 PDI 83.7 10 0.00022 31.1 8.9 53 278-356 31-88 (111)
418 cd02249 ZZ Zinc finger, ZZ typ 82.6 0.83 1.8E-05 31.0 1.6 32 417-448 1-33 (46)
419 cd03060 GST_N_Omega_like GST_N 80.9 9.5 0.00021 28.1 7.1 60 271-361 3-62 (71)
420 KOG1752 Glutaredoxin and relat 80.8 8 0.00017 31.4 7.0 62 110-199 17-78 (104)
421 PRK15317 alkyl hydroperoxide r 80.5 4.8 0.0001 42.8 7.3 62 103-191 114-175 (517)
422 cd03072 PDI_b'_ERp44 PDIb' fam 80.0 15 0.00032 30.1 8.6 51 280-356 29-84 (111)
423 cd02983 P5_C P5 family, C-term 80.0 12 0.00026 31.7 8.2 49 123-196 42-92 (130)
424 PF10571 UPF0547: Uncharacteri 80.0 0.96 2.1E-05 26.7 1.0 23 418-440 2-24 (26)
425 PRK10638 glutaredoxin 3; Provi 79.6 3.6 7.8E-05 31.6 4.5 60 109-199 4-63 (83)
426 PF02966 DIM1: Mitosis protein 78.4 13 0.00029 31.3 7.6 44 105-151 20-63 (133)
427 KOG0541 Alkyl hydroperoxide re 77.1 8.2 0.00018 33.5 6.1 103 257-362 34-151 (171)
428 PF07449 HyaE: Hydrogenase-1 e 74.6 3.3 7.1E-05 33.8 3.0 26 335-361 72-97 (107)
429 KOG0913 Thiol-disulfide isomer 74.3 0.98 2.1E-05 41.7 -0.1 65 108-198 42-106 (248)
430 KOG0541 Alkyl hydroperoxide re 73.8 7.1 0.00015 33.8 5.0 63 97-161 34-102 (171)
431 cd02335 ZZ_ADA2 Zinc finger, Z 73.2 2.6 5.6E-05 29.0 1.8 31 417-447 1-33 (49)
432 KOG3171 Conserved phosducin-li 72.9 22 0.00047 32.6 8.0 86 248-362 138-227 (273)
433 TIGR03140 AhpF alkyl hydropero 72.3 11 0.00023 40.1 7.2 62 103-191 115-176 (515)
434 KOG4498 Uncharacterized conser 70.5 7.3 0.00016 34.9 4.4 56 91-148 35-92 (197)
435 PRK10824 glutaredoxin-4; Provi 70.3 6.5 0.00014 32.5 3.9 63 106-199 15-81 (115)
436 PRK12759 bifunctional gluaredo 69.7 8.2 0.00018 39.7 5.4 32 109-147 4-35 (410)
437 COG3054 Predicted transcriptio 69.5 28 0.00061 30.0 7.5 121 257-393 51-183 (184)
438 KOG3170 Conserved phosducin-li 68.7 21 0.00046 32.3 6.9 91 265-390 111-201 (240)
439 PF13778 DUF4174: Domain of un 68.0 46 0.001 27.6 8.6 90 100-202 3-95 (118)
440 PRK10954 periplasmic protein d 67.7 5.9 0.00013 36.4 3.6 34 104-137 36-72 (207)
441 PRK11788 tetratricopeptide rep 67.3 8 0.00017 38.9 4.8 22 416-437 354-375 (389)
442 PF13911 AhpC-TSA_2: AhpC/TSA 67.2 13 0.00028 30.4 5.2 53 288-344 3-55 (115)
443 cd03073 PDI_b'_ERp72_ERp57 PDI 65.6 28 0.00061 28.5 6.8 49 122-196 35-88 (111)
444 smart00109 C1 Protein kinase C 65.1 2 4.4E-05 29.0 -0.1 35 414-448 9-45 (49)
445 PF07449 HyaE: Hydrogenase-1 e 64.9 5.3 0.00011 32.6 2.3 27 11-38 68-94 (107)
446 smart00291 ZnF_ZZ Zinc-binding 64.0 7.2 0.00016 26.1 2.5 33 415-447 3-36 (44)
447 KOG2507 Ubiquitin regulatory p 63.6 62 0.0013 32.8 9.7 27 335-361 67-93 (506)
448 cd03035 ArsC_Yffb Arsenate Red 62.6 21 0.00046 28.9 5.5 45 270-323 2-49 (105)
449 cd03036 ArsC_like Arsenate Red 62.0 5.4 0.00012 32.7 1.9 31 271-310 3-33 (111)
450 cd03032 ArsC_Spx Arsenate Redu 60.6 22 0.00048 29.2 5.4 44 270-322 3-49 (115)
451 COG4545 Glutaredoxin-related p 60.1 22 0.00048 26.7 4.6 70 110-200 5-77 (85)
452 cd02341 ZZ_ZZZ3 Zinc finger, Z 59.7 6.2 0.00013 27.1 1.6 31 417-447 1-35 (48)
453 cd02977 ArsC_family Arsenate R 59.4 12 0.00027 30.0 3.6 20 270-289 2-21 (105)
454 PRK14890 putative Zn-ribbon RN 59.1 5.9 0.00013 28.3 1.4 12 428-439 46-57 (59)
455 PF06953 ArsD: Arsenical resis 58.8 64 0.0014 27.0 7.8 62 123-202 25-86 (123)
456 COG2761 FrnE Predicted dithiol 58.7 24 0.00051 32.9 5.7 41 107-148 5-46 (225)
457 TIGR02742 TrbC_Ftype type-F co 57.7 58 0.0013 27.6 7.4 23 333-355 59-81 (130)
458 cd02981 PDI_b_family Protein D 57.3 74 0.0016 24.6 7.9 30 265-297 17-46 (97)
459 cd02343 ZZ_EF Zinc finger, ZZ 57.2 5.8 0.00013 27.2 1.1 30 418-447 2-32 (48)
460 TIGR01617 arsC_related transcr 54.7 25 0.00054 29.0 4.8 32 271-311 3-34 (117)
461 PF06053 DUF929: Domain of unk 54.3 39 0.00084 32.1 6.4 42 264-309 57-98 (249)
462 KOG3507 DNA-directed RNA polym 54.0 5.6 0.00012 28.1 0.6 28 416-443 20-50 (62)
463 PRK01655 spxA transcriptional 52.9 28 0.0006 29.5 4.9 45 269-322 2-49 (131)
464 cd03072 PDI_b'_ERp44 PDIb' fam 52.0 61 0.0013 26.4 6.6 50 121-196 30-84 (111)
465 cd03041 GST_N_2GST_N GST_N fam 51.3 39 0.00084 25.2 5.0 20 270-289 3-22 (77)
466 PHA03075 glutaredoxin-like pro 50.6 22 0.00048 29.2 3.6 30 266-295 2-31 (123)
467 smart00249 PHD PHD zinc finger 50.3 24 0.00052 23.0 3.3 43 419-470 2-45 (47)
468 PF13743 Thioredoxin_5: Thiore 49.8 27 0.00059 31.2 4.5 35 271-308 2-36 (176)
469 COG1651 DsbG Protein-disulfide 49.8 35 0.00075 32.0 5.6 46 92-137 71-116 (244)
470 PF00628 PHD: PHD-finger; Int 49.7 7.9 0.00017 26.5 0.8 31 419-449 2-33 (51)
471 KOG2640 Thioredoxin [Function 49.2 7 0.00015 37.8 0.6 86 266-393 77-162 (319)
472 KOG2603 Oligosaccharyltransfer 49.2 76 0.0016 31.0 7.5 75 104-199 59-141 (331)
473 cd03045 GST_N_Delta_Epsilon GS 48.9 28 0.00061 25.5 3.9 31 271-308 3-33 (74)
474 COG3019 Predicted metal-bindin 48.3 1.5E+02 0.0033 25.3 8.3 61 268-362 27-90 (149)
475 PF09673 TrbC_Ftype: Type-F co 48.2 80 0.0017 25.9 6.7 21 334-354 60-80 (113)
476 COG1651 DsbG Protein-disulfide 47.9 37 0.0008 31.8 5.4 45 252-296 71-115 (244)
477 PRK12559 transcriptional regul 47.2 70 0.0015 27.1 6.4 44 269-321 2-48 (131)
478 KOG0954 PHD finger protein [Ge 46.6 26 0.00057 37.9 4.3 68 376-445 233-303 (893)
479 cd03051 GST_N_GTT2_like GST_N 46.6 33 0.00071 24.9 3.9 20 271-290 3-22 (74)
480 cd02342 ZZ_UBA_plant Zinc fing 46.2 13 0.00028 24.8 1.3 32 418-449 2-35 (43)
481 cd03040 GST_N_mPGES2 GST_N fam 46.1 1.2E+02 0.0025 22.3 8.1 20 270-289 3-22 (77)
482 PF13417 GST_N_3: Glutathione 44.9 1.2E+02 0.0027 22.2 8.7 58 272-361 2-59 (75)
483 KOG1672 ATP binding protein [P 44.2 47 0.001 30.1 4.9 70 104-201 83-152 (211)
484 cd03060 GST_N_Omega_like GST_N 43.5 48 0.001 24.2 4.4 32 111-149 3-34 (71)
485 KOG4498 Uncharacterized conser 43.0 38 0.00083 30.5 4.2 56 251-308 35-92 (197)
486 cd03037 GST_N_GRX2 GST_N famil 42.9 91 0.002 22.5 5.8 18 272-289 4-21 (71)
487 cd00570 GST_N_family Glutathio 42.8 50 0.0011 23.0 4.4 20 271-290 3-22 (71)
488 PF13240 zinc_ribbon_2: zinc-r 42.3 13 0.00027 21.2 0.7 22 419-440 2-23 (23)
489 KOG2824 Glutaredoxin-related p 41.7 3.3E+02 0.0071 26.2 10.5 20 414-436 260-279 (281)
490 COG2888 Predicted Zn-ribbon RN 41.7 11 0.00024 26.9 0.5 11 429-439 49-59 (61)
491 COG1198 PriA Primosomal protei 41.5 54 0.0012 36.2 6.0 52 300-361 349-401 (730)
492 PRK11823 DNA repair protein Ra 41.4 17 0.00036 37.9 2.0 24 414-437 5-28 (446)
493 PRK13344 spxA transcriptional 41.0 71 0.0015 27.0 5.5 44 270-322 3-49 (132)
494 PF07754 DUF1610: Domain of un 40.7 24 0.00053 20.3 1.7 11 428-438 14-24 (24)
495 cd02977 ArsC_family Arsenate R 40.6 55 0.0012 26.2 4.7 44 110-160 2-46 (105)
496 TIGR00416 sms DNA repair prote 40.4 18 0.00039 37.7 2.1 24 414-437 5-28 (454)
497 PF13248 zf-ribbon_3: zinc-rib 39.8 15 0.00032 21.5 0.8 23 418-440 4-26 (26)
498 smart00659 RPOLCX RNA polymera 39.6 18 0.00038 24.3 1.2 26 416-441 2-30 (44)
499 cd02337 ZZ_CBP Zinc finger, ZZ 39.2 14 0.0003 24.4 0.7 30 417-447 1-31 (41)
500 PF03604 DNA_RNApol_7kD: DNA d 38.4 7.5 0.00016 24.2 -0.6 9 432-440 19-27 (32)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.92 E-value=6.3e-25 Score=188.95 Aligned_cols=130 Identities=51% Similarity=0.911 Sum_probs=120.6
Q ss_pred CceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccc
Q 011791 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 167 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~ 167 (477)
||+.+.+|+.+++++++||+|+|+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+.+.++++.++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 57789999999999999999999999999999999999999999999876556999999999999999999999999888
Q ss_pred cCCc-hhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCC
Q 011791 168 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPF 217 (477)
Q Consensus 168 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~ 217 (477)
++.. +....+.+.|++.++|+++|+|++|+++.+++.+++..+|..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8766 4456789999999999999999999999999999999999999997
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.91 E-value=1.2e-24 Score=187.88 Aligned_cols=120 Identities=31% Similarity=0.597 Sum_probs=107.7
Q ss_pred CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcC-----CCcEEEEEEEcCCCHHHHHHhhcCCC--Ccccc
Q 011791 96 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-----GESFEIVLISLDDEEESFKRDLGSMP--WLALP 168 (477)
Q Consensus 96 ~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----g~~~~vv~is~D~~~~~~~~~~~~~~--~~~~~ 168 (477)
+.+++++++||+|+|+|||+||+||+.++|.|.++|++++++ +.+|+||+||.|.+.+.+.+++++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 355778999999999999999999999999999999998763 23599999999999888999999886 88888
Q ss_pred CCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCC
Q 011791 169 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 215 (477)
Q Consensus 169 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~ 215 (477)
+.......+.+.|++.++|+++|||++|+++.++++..|+++|..+|
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 88766678999999999999999999999999999999999887654
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=3.8e-24 Score=184.08 Aligned_cols=130 Identities=54% Similarity=1.107 Sum_probs=119.5
Q ss_pred cceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCcee
Q 011791 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 327 (477)
Q Consensus 248 ~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~ 327 (477)
+|..+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+++++++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 45668999999999999999999999999999999999999999999876557999999999999999999999999888
Q ss_pred ccCc-chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCC
Q 011791 328 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 377 (477)
Q Consensus 328 p~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~ 377 (477)
|+.. +....+.+.|+|.++|+++|||++|+++.+.+++++..+|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5556889999999999999999999999999999999999999986
No 4
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=6.7e-24 Score=183.14 Aligned_cols=119 Identities=32% Similarity=0.649 Sum_probs=105.8
Q ss_pred CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-----CCcEEEEEEeCCCChhHHHHHHhcCC--Cceec
Q 011791 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-----NESLEVVFISSDRDQTSFDEFFKGMP--WLALP 328 (477)
Q Consensus 256 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~p 328 (477)
..+++++++||+|+|+|||+||++|++++|.|+++|++++++ ..+++||+|+.|.+.+.+++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999999864 23699999999988888999999997 77888
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEA 374 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~ 374 (477)
+..+....+.+.|+|.++|+++|||++|+|+.++++..|..+|..+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8877667899999999999999999999999999988887777443
No 5
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.90 E-value=4.2e-23 Score=177.77 Aligned_cols=128 Identities=48% Similarity=0.877 Sum_probs=113.0
Q ss_pred ceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC-CCccc
Q 011791 89 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM-PWLAL 167 (477)
Q Consensus 89 fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~-~~~~~ 167 (477)
|++|.+ +++++++++||+|+|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+.+..+++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 455666 7999999999999999999999999999999999999998763349999999999988999999988 68888
Q ss_pred cCCc-hhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHh-hcCCCCCCC
Q 011791 168 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE-EHGVGAFPF 217 (477)
Q Consensus 168 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~-~~g~~a~P~ 217 (477)
++.+ .....+.+.|++.++|+++|+|++|+++++++.+.+. ++|..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8765 3456788899999999999999999999999876665 599999997
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.89 E-value=1.9e-22 Score=173.73 Aligned_cols=127 Identities=52% Similarity=1.020 Sum_probs=111.2
Q ss_pred eeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC-CCceec
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM-PWLALP 328 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~p 328 (477)
.+|.+ +++++++++||++||+||++||++|+.++|.|++++++++++..+++|++|++|.+.+++++|++++ +|..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 33444 6999999999999999999999999999999999999998654479999999999888999999999 688888
Q ss_pred cCc-chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhh-cCCCCCCC
Q 011791 329 FGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAV-HGAEAYPF 377 (477)
Q Consensus 329 ~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~-~g~~~~~~ 377 (477)
+.. .....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+||+
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 765 34567888999999999999999999999998887777 88888875
No 7
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.88 E-value=1.4e-22 Score=172.58 Aligned_cols=123 Identities=36% Similarity=0.643 Sum_probs=115.9
Q ss_pred eecCCCCeEecC-CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC--CCCcc
Q 011791 90 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 166 (477)
Q Consensus 90 l~~~~g~~v~ls-~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~--~~~~~ 166 (477)
+...+|..+..+ .++||+|++||.|.||+||+.|+|.|.++|+.+++.+.+|+||+||.|.+.+++.+++.. ++|+.
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 557788888887 689999999999999999999999999999999999899999999999999999999995 68999
Q ss_pred ccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCC
Q 011791 167 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 212 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~ 212 (477)
+|+.+...+++.+.|+|.++|++++++++|+++..+++..|...|.
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998874
No 8
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.85 E-value=4.2e-21 Score=163.55 Aligned_cols=120 Identities=48% Similarity=0.917 Sum_probs=113.1
Q ss_pred ccCCCceecc-cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc--CCCceec
Q 011791 252 GKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG--MPWLALP 328 (477)
Q Consensus 252 ~~~g~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~p 328 (477)
..+|..+..+ .++||.|++||.|.||++|+.+.|.|.++|+++++.+..++||+||.|++.+++..|+.. ++|+.+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 7777777776 789999999999999999999999999999999988788999999999999999999995 5799999
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHG 371 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g 371 (477)
+.++..+++.++|+|.++|++++++++|++|..++|..+...|
T Consensus 99 f~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g 141 (157)
T KOG2501|consen 99 FGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGG 141 (157)
T ss_pred CCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhc
Confidence 9999999999999999999999999999999999999998887
No 9
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.82 E-value=9.8e-20 Score=147.35 Aligned_cols=93 Identities=38% Similarity=0.711 Sum_probs=84.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC--CCccccCCchhHHHHHHHcC
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM--PWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 182 (477)
||+++|+|||+||++|+.++|.|.+++++|++ +.++++|+|+.|.+.++++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999995 4559999999999999999999987 89999999888889999999
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 10
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.82 E-value=1.5e-19 Score=146.26 Aligned_cols=93 Identities=45% Similarity=0.983 Sum_probs=85.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC--CCceeccCcchhHHHHHhcC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM--PWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~ 342 (477)
||+++|+|||+||++|++++|.|.++++++++ +.+++||+|++|.+.++++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999995 4579999999999999999999988 89999999988889999999
Q ss_pred CCCcceEEEECCCCcE
Q 011791 343 VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 343 v~~~Pt~~lid~~G~i 358 (477)
|.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.81 E-value=2.8e-19 Score=156.73 Aligned_cols=116 Identities=33% Similarity=0.622 Sum_probs=103.2
Q ss_pred cCCCccee-c--cCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 244 SGDLDFVV-G--KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 244 ~~~p~f~l-~--~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
...|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.+.+++++++++ ++.+++|+.+.+.. ..+|+
T Consensus 4 ~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~~~ 80 (146)
T PF08534_consen 4 DKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VREFL 80 (146)
T ss_dssp SB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHHHH
T ss_pred CCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHHHH
Confidence 34588887 5 99999999999999999999999 9999999999999999999876 79999999997765 88999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCC---------CcceEEEECCCCcEEEecc
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~iv~~~~ 363 (477)
++.+ .++|+..|....+.+.|++. ++|+++|||++|+|++.+.
T Consensus 81 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 81 KKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp HHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred HhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 8866 77888888889999999998 9999999999999999843
No 12
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.80 E-value=3.1e-19 Score=149.46 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.9
Q ss_pred Cccee-ccCCCceecccCC-CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 247 LDFVV-GKNGGKVPVSDLA-GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++++ ++.++.++ +.+.++.++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 67888 8999999999997 99999999999999999999999999888754 47888775 6677899999999986
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
..+|...+ ..+.+.|++.++|++++||++|+|++++
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 66776653 4588999999999999999999999874
No 13
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.79 E-value=2e-18 Score=177.29 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=108.7
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CChhHHHHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEF 318 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~ 318 (477)
..|+|.+ +.+|+++.++ +||+|||+|||+||++|+.++|.|++++++++.+ +++||.|+++ .+..+++++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHH
Confidence 4699998 9999999988 7999999999999999999999999999998754 6899999873 234678888
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
++.+++.++|+..|....+.+.|+|+++|+++|||++|+++.+.. | ..+.+.+.++++
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~-------G----~~~~eeL~a~Ie 170 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVK-------G----SISEAQALALIR 170 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEe-------C----CCCHHHHHHHHH
Confidence 888888888999998999999999999999999999999998843 3 345555555554
No 14
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.79 E-value=1.6e-18 Score=157.86 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=95.2
Q ss_pred ccCCCccee-ccC--CCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKN--GGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~--g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+ |+.++++.+ +||+++|+|||+||++|++++|.|+++++ + +++|++|+.+.+.+..++|
T Consensus 42 g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~ 115 (185)
T PRK15412 42 GKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISW 115 (185)
T ss_pred CCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHH
Confidence 455689998 777 466776665 79999999999999999999999988753 2 5889999998888889999
Q ss_pred HhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+++++ ..+| +..|....+.+.|+|.++|++++||++|+|+.++.
T Consensus 116 ~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 116 LKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 160 (185)
T ss_pred HHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEe
Confidence 99887 4455 35567778889999999999999999999998854
No 15
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.78 E-value=7.6e-19 Score=149.93 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=96.0
Q ss_pred CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CChhHHHHHHhcCCCceecc
Q 011791 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 255 g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~~~~~p~ 329 (477)
|+++++++++||++||+||++||++|+.++|.|++++++|+++ ++.|++|+.+ .+.+.+++|+++++ +++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 5789999999999999999999999999999999999999865 7999999863 45778999999888 57899
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEecc
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
..|....+.+.|++.++|++++||++|+++.+..
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 8898899999999999999999999999998853
No 16
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.78 E-value=1.3e-18 Score=148.69 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=98.0
Q ss_pred CCccee-ccCC--CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 DLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~p~f~l-~~~g--~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
.|+|.+ +.+| +.+++++++||+++|+||++||++|++++|.|+++.+++ +++|++|+.+.+.+++++|++++
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhc
Confidence 588988 8888 889999999999999999999999999999999987664 38899999988889999999988
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
.....++..|....+++.|++.++|+++++|++|+++.+.
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 7533345567778899999999999999999999999874
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=3.1e-18 Score=154.51 Aligned_cols=117 Identities=24% Similarity=0.515 Sum_probs=106.8
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.+.++++++++. ++.+++|+.|.+.+++++++++
T Consensus 38 g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 38 GKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHH
Confidence 445589999 9999999999999999999999999999999999999999999865 6999999999888999999998
Q ss_pred CCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 322 ~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++ .++|+..|....+.+.|++.++|++++||++|+++...
T Consensus 116 ~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 116 YG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred hC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 87 57888888888999999999999999999999999773
No 18
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.77 E-value=9.4e-19 Score=154.38 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=93.2
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
|+|.+ +.+|+++++++++||+|||+|||+||+ |+.++|.|++++++|+++ ++.|++|++|. +.+..++|
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHH
Confidence 78888 999999999999999999999999999 999999999999999865 69999998753 35678999
Q ss_pred Hhc-CCCceeccCcch--hHH-HHHhcC--CCCcc-----------eEEEECCCCcEEEecc
Q 011791 319 FKG-MPWLALPFGDAR--KAS-LSRKFK--VSGIP-----------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~-~~~~~~p~~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~iv~~~~ 363 (477)
+++ ++ ++||+..|. ... ..+.|+ +.++| +++|||++|+|+.+..
T Consensus 80 ~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 80 CETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred HHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 986 56 678877542 222 344555 45666 8999999999999854
No 19
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.77 E-value=5.3e-18 Score=152.74 Aligned_cols=146 Identities=16% Similarity=0.301 Sum_probs=119.6
Q ss_pred CCCccee-ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
..|+|.+ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++|+++ ++++|+|++|. +.+++
T Consensus 3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHH
Confidence 3588988 999999999998 8999999999999999999999999999999865 69999999985 56789
Q ss_pred HHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 316 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 316 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++++++++ +.+|++.|....+.+.|++..+|+++|||++|+|++....+. ..+. .....+..++.++|+.++.+
T Consensus 81 ~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 81 KAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHHHHHHHHHHcC
Confidence 99999887 458888888889999999999999999999999998753210 0110 01233457788888888876
Q ss_pred Cch
Q 011791 396 WPE 398 (477)
Q Consensus 396 ~~~ 398 (477)
.+.
T Consensus 155 ~~~ 157 (171)
T cd02969 155 KPV 157 (171)
T ss_pred CCC
Confidence 544
No 20
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.77 E-value=4.1e-18 Score=158.94 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=94.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~ 314 (477)
+...|+|.+ +.+|+.+++++++||++||+|||+||++|+.++|.|++++++|+++ +++||+|++| .+.++
T Consensus 76 g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHH
Confidence 445699999 9999999999999999999999999999999999999999999876 7999999975 34567
Q ss_pred HHHHHh-cCCCceeccCc--chhH-HHHHhc-------C------CCCcceEEEECCCCcEEEecc
Q 011791 315 FDEFFK-GMPWLALPFGD--ARKA-SLSRKF-------K------VSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 315 ~~~~~~-~~~~~~~p~~~--d~~~-~l~~~~-------~------v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.++|+. +++ +.+|+.. |.++ .+...| + +...|+++|||++|+|+.+..
T Consensus 154 i~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 154 IKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred HHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 889984 554 6677763 2222 222222 1 456799999999999999854
No 21
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.76 E-value=4.3e-18 Score=142.54 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=91.8
Q ss_pred CCce-ecCCCCeEecCCCC-CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCC
Q 011791 87 RDFV-ISSDGRKISVSDLE-GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 164 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~ 164 (477)
|+|. .+.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++.+. +.++.++ |.+.+...+++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence 4664 47899999999997 999999999999999999999999999887543 7888776 6677888888887664
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|... ...+.+.|++..+|++++||++|+++++++
T Consensus 77 ~~~p~~~--~~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVL--SAELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CCCcEEe--cHHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 4444433 245788999999999999999999998764
No 22
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.76 E-value=3.3e-18 Score=145.38 Aligned_cols=115 Identities=32% Similarity=0.650 Sum_probs=105.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||+++|.||++ ||++|+..++.|++++++|+++ ++++++|+.| +.++.+++.+
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-SHHHHHHHHH
T ss_pred cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccc-cccchhhhhh
Confidence 445699999 999999999999999999999999 9999999999999999999976 7999999997 5568888888
Q ss_pred cCCCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEe
Q 011791 321 GMPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~ 361 (477)
.++ ..+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 79 ~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 79 EYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 777 88899999899999999998 99999999999999874
No 23
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=7.2e-17 Score=169.19 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=107.9
Q ss_pred HHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCC-CChhhHHHHHHHHHHHhhhhhhhhhhccCCCccee-ccC
Q 011791 177 LARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFP-FTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKN 254 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l-~~~ 254 (477)
+.+.||+..+|++++.+.+|+.+..... .+ .+.+.+..+.+..........+.+.......+..+ .+.
T Consensus 294 ~~~~~gi~~~P~~~i~~~~~~y~~~~~~----------~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~ 363 (477)
T PTZ00102 294 AKEHLLIEEFPGLAYQSPAGRYLLPPAK----------ESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV 363 (477)
T ss_pred HHHhcCcccCceEEEEcCCcccCCCccc----------cccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence 6778999999999888877754432110 01 14555555554433332223332222222222223 566
Q ss_pred CCceecc-cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 255 GGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 255 g~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
|.++... .-.||+|+|+|||+||++|+.+.|.++++++.+++. ..+.+..++.+...
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~--------------------- 421 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANE--------------------- 421 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCc---------------------
Confidence 6666543 234899999999999999999999999999988753 24666666555332
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
..++.|+++++||++++++++++..+ +.| ....+.|.+.+++.+..
T Consensus 422 --~~~~~~~v~~~Pt~~~~~~~~~~~~~-------~~G-------~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 422 --TPLEEFSWSAFPTILFVKAGERTPIP-------YEG-------ERTVEGFKEFVNKHATN 467 (477)
T ss_pred --cchhcCCCcccCeEEEEECCCcceeE-------ecC-------cCCHHHHHHHHHHcCCC
Confidence 35778999999999999877665332 222 12236677777776654
No 24
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.76 E-value=1.7e-18 Score=151.68 Aligned_cols=118 Identities=29% Similarity=0.448 Sum_probs=99.2
Q ss_pred ccCcCCCcee---cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 82 LTSHSRDFVI---SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~---~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
.|+.+|+|.+ +.+|+++++++++||+++|+||++ |||+|+.++|.|.+++++|+++| +.+|+|+.+.+.. ..+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence 4788999954 599999999999999999999999 99999999999999999999988 9999999998876 666
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
++++.. ..+++..+....+.+.|++. ++|+++|||++|+|++...
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 79 FLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp HHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred HHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 666533 33333444556789999988 9999999999999999875
No 25
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.76 E-value=8.1e-18 Score=154.51 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=94.2
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~ 314 (477)
....|+|.+ +.+|+.+++++++||+|||+|||+||++|+.++|.|++++++|+++ +++||+|+++ .+.++
T Consensus 16 ~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~ 93 (199)
T PTZ00056 16 RKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKD 93 (199)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHH
Confidence 345699999 9999999999999999999999999999999999999999999876 7999999974 35678
Q ss_pred HHHHHhcCCCceeccCcch------hHH--------HHHhcCCC----Cc---ceEEEECCCCcEEEecc
Q 011791 315 FDEFFKGMPWLALPFGDAR------KAS--------LSRKFKVS----GI---PMLVAIGPSGRTITKEA 363 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~------~~~--------l~~~~~v~----~~---Pt~~lid~~G~iv~~~~ 363 (477)
+++|+++++ +.+|+..+. ... +...|++. ++ |+++|||++|+|+.+..
T Consensus 94 ~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 94 IRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 999999887 567765431 111 22234432 23 37999999999998753
No 26
>PLN02412 probable glutathione peroxidase
Probab=99.76 E-value=5.6e-18 Score=151.56 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 316 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~ 316 (477)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.++..
T Consensus 8 ~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHH
Confidence 4589999 9999999999999999999999999999999999999999999976 79999999863 344555
Q ss_pred HHH-hcCCCceeccCcc--hh-HHHHHhcC-------------CCCcceEEEECCCCcEEEecc
Q 011791 317 EFF-KGMPWLALPFGDA--RK-ASLSRKFK-------------VSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 317 ~~~-~~~~~~~~p~~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+++ ++++ +.||+..+ .+ ....+.|+ |.+.|+++|||++|+|+.+..
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 554 5555 67887642 22 13333332 677899999999999999853
No 27
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.75 E-value=1.1e-17 Score=150.77 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=95.5
Q ss_pred hhccCCCccee-ccCCC--ceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 241 VLVSGDLDFVV-GKNGG--KVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~--~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
..+...|+|.+ +.+|+ .++++++ +||+++|+||++||++|+.+.|.+++++++ ++++++|+.+.+.++.+
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHH
Confidence 34556799998 88886 4555565 699999999999999999999999877542 48899999987777888
Q ss_pred HHHhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++++ ..+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus 109 ~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 109 KFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred HHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 9999887 4455 4557778899999999999999999999999884
No 28
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.74 E-value=5.3e-18 Score=144.72 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCHHHHHHhhcCCCCcccc
Q 011791 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPWLALP 168 (477)
Q Consensus 94 ~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-----~~~~~~~~~~~~~~~~~~~ 168 (477)
.|+++++++++||+++|+||++||++|+.++|.|++++++|++++ ++||+|+.+ .+.+..++++++.. +.+|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 367899999999999999999999999999999999999999877 999999863 45677777777654 2345
Q ss_pred CCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 169 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 169 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
...+....+.+.|++.++|+++|||++|++++...
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 55555677899999999999999999999998764
No 29
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.74 E-value=2.5e-17 Score=145.70 Aligned_cols=116 Identities=21% Similarity=0.329 Sum_probs=102.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++ ||+.|..+.+.|++++++++++ ++++|+|+.| +.+++++|++
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~~ 83 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFAE 83 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHH
Confidence 445689999 999999999999999999999986 6888999999999999999876 6999999998 5688899999
Q ss_pred cCCCceeccCcchhHHHHHhcCCCCc------------ceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDARKASLSRKFKVSGI------------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~iv~~~ 362 (477)
+++ ..+|++.|....+.+.|++... |+++|||++|+|+...
T Consensus 84 ~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 84 KEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 887 5788888888889999998754 6789999999999884
No 30
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-17 Score=166.15 Aligned_cols=88 Identities=24% Similarity=0.477 Sum_probs=65.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|.|||.||||||+||+++.|.+++|+++|++. -.||...+|.+.++ .....+.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAKmDaTaNd-----------------------~~~~~~~ 437 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAKMDATAND-----------------------VPSLKVD 437 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEEecccccc-----------------------Ccccccc
Confidence 899999999999999999999999999999873 35677788876531 2345678
Q ss_pred CcceEEEECCCC--cEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 345 GIPMLVAIGPSG--RTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 345 ~~Pt~~lid~~G--~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
++||++++-..+ +++... | +++++.|...+++..
T Consensus 438 ~fPTI~~~pag~k~~pv~y~--------g-------~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 438 GFPTILFFPAGHKSNPVIYN--------G-------DRTLEDLKKFIKKSA 473 (493)
T ss_pred ccceEEEecCCCCCCCcccC--------C-------CcchHHHHhhhccCC
Confidence 899999994433 233322 2 455677777776544
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.73 E-value=5.9e-17 Score=148.00 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=100.8
Q ss_pred hccCCCccee-ccCCCceecc--cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+...|+|.+ +.+|+.++++ .++||+++|+||++||++|+.++|.+++++++. ++.+++|+.| +.++.++|
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~~-~~~~~~~~ 121 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISDG-TPAEHRRF 121 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeCC-CHHHHHHH
Confidence 3455699999 9999999994 578999999999999999999999999987653 3668889855 67788999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
+++++. .++... ...++.+.|++.++|++++||++|+|+.++. .-+.++++++++.++
T Consensus 122 ~~~~~~-~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 122 LKDHEL-GGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADR 179 (189)
T ss_pred HHhcCC-Ccceee-chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHH
Confidence 998874 232221 3467889999999999999999999998632 123455666665553
No 32
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.73 E-value=2.7e-17 Score=142.92 Aligned_cols=113 Identities=27% Similarity=0.419 Sum_probs=102.8
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|++++++++++ +++||+|++| +.+.+++|.++++
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~~~~~ 79 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPD-SVESHAKFAEKYG 79 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHHhC
Confidence 488888 8999999999999999999999 589999999999999999999865 6999999998 4578899999887
Q ss_pred CceeccCcchhHHHHHhcCCCCc---------ceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~iv~~~ 362 (477)
..+|++.|....+.+.||+... |++++||++|+|+...
T Consensus 80 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 80 -LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred -CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 5788888888899999999988 9999999999999984
No 33
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.72 E-value=4.8e-17 Score=145.63 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=101.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. +++|++|+.|. ....++|.+
T Consensus 21 G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~-~~~~~~f~~ 95 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL-PFAQKRFCG 95 (167)
T ss_pred CCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC-HHHHHHHHH
Confidence 455699998 8999999999999999999999999 9999999999999998883 58999999984 466788999
Q ss_pred cCCCceeccCcc-hhHHHHHhcCCCCcc---------eEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~iv~~~~ 363 (477)
+++...++++.| ....+++.||+...| ++++||++|+|+..+.
T Consensus 96 ~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 96 AEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred hCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 887545788888 556899999998877 9999999999999853
No 34
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.72 E-value=1.7e-17 Score=140.94 Aligned_cols=116 Identities=34% Similarity=0.563 Sum_probs=97.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+||++ ||++|+..++.|++++++|+++| +.+++|+.|.. +..+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhh
Confidence 5889999965 899999999999999999999999 99999999999999999999887 99999999754 3556666
Q ss_pred cCCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCcccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 201 (477)
+... +.++...+....+.+.|++. .+|+++|||++|+|+++
T Consensus 78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 5433 33333344556789999998 99999999999999863
No 35
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.72 E-value=2.5e-17 Score=140.75 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=92.8
Q ss_pred cCCCcee-cCCC--CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 85 HSRDFVI-SSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 85 ~~p~fl~-~~~g--~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
++|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|.++++++ + ++||+|+.+++.+.+++++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence 5688854 6777 889999999999999999999999999999999988764 3 899999999888888888876
Q ss_pred CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 162 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
......+...+....+++.|++.++|+++++|++|+++.+..
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~ 118 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHV 118 (127)
T ss_pred cCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEe
Confidence 532211222234456889999999999999999999887653
No 36
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.71 E-value=1.5e-16 Score=163.48 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=101.7
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCHHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESF 155 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-----~~~~~~ 155 (477)
.+.++|+|.+ |.+|+.+.++ +||+|+|+|||+||+||+.++|.|.+++++++..+ ++||+|+++ .+.+.+
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHH
Confidence 3567999955 9999999987 89999999999999999999999999999998666 999999873 345667
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++++.+.+..++...+....+++.|+|.++|+++|||++|+++....
T Consensus 110 ~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~ 157 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVK 157 (521)
T ss_pred HHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEe
Confidence 778777777677777777778999999999999999999999997764
No 37
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.71 E-value=6.9e-17 Score=144.42 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=102.9
Q ss_pred hhhhhhhccCCCccee---ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEE------EEE
Q 011791 236 QTLESVLVSGDLDFVV---GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV------VFI 306 (477)
Q Consensus 236 ~~l~~~~~~~~p~f~l---~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i------v~i 306 (477)
+.++++.+...-+..+ +.+.+.++.++++||+.||+|||+||++|+.+.|.|.++.+ + ++.+ +.|
T Consensus 27 ~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~--~~~~~~y~~t~~I 100 (184)
T TIGR01626 27 QSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A--KFPPVKYQTTTII 100 (184)
T ss_pred CcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c--CCCcccccceEEE
Confidence 3343433333333444 34456778889999999999999999999999999998833 2 4667 899
Q ss_pred eCCCChhHHHHHH----hcCCCcee---ccCcchhHHHHHhcCCCCcceE-EEECCCCcEEEeccchhhhhcCCCCCCCC
Q 011791 307 SSDRDQTSFDEFF----KGMPWLAL---PFGDARKASLSRKFKVSGIPML-VAIGPSGRTITKEARDMIAVHGAEAYPFT 378 (477)
Q Consensus 307 ~~d~~~~~~~~~~----~~~~~~~~---p~~~d~~~~l~~~~~v~~~Pt~-~lid~~G~iv~~~~~~~~~~~g~~~~~~~ 378 (477)
+.|.+......|+ ++.. ..+ ++..|..+.+...|++.++|++ |+||++|+|+.+.. ++.+
T Consensus 101 N~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~-----------G~l~ 168 (184)
T TIGR01626 101 NADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKE-----------GALS 168 (184)
T ss_pred ECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEe-----------CCCC
Confidence 9987655544444 4333 233 4777778888999999999988 89999999999854 3567
Q ss_pred HHHHHHHHHHHHHHH
Q 011791 379 EERMKEIDGQYNEMA 393 (477)
Q Consensus 379 ~~~~~~l~~~~~~~~ 393 (477)
++.++++...+++++
T Consensus 169 ~ee~e~~~~li~~ll 183 (184)
T TIGR01626 169 DSDIQTVISLVNGLL 183 (184)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777777765
No 38
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.71 E-value=8.3e-17 Score=142.14 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=90.8
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~ 318 (477)
-+|.+ +.+|+++++++++||++||+|||+||++|+..+|.|++++++|+++ ++.|++|+++ .+.+..++|
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHH
Confidence 36777 8999999999999999999999999999999999999999999876 6999999852 345678999
Q ss_pred Hhc-CCCceeccCcc-----hhHHHHHhcC---CCCcce----EEEECCCCcEEEecc
Q 011791 319 FKG-MPWLALPFGDA-----RKASLSRKFK---VSGIPM----LVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~-~~~~~~p~~~d-----~~~~l~~~~~---v~~~Pt----~~lid~~G~iv~~~~ 363 (477)
+++ ++ +.+|+..+ ........|. ..++|+ ++|||++|+++.+..
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 975 55 56777644 1112122232 246898 999999999999853
No 39
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.71 E-value=1.8e-16 Score=142.97 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=106.7
Q ss_pred cCCCccee-ccCC----CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 244 SGDLDFVV-GKNG----GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 244 ~~~p~f~l-~~~g----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
...|+|.+ +.+| +.+++++++||++||+|| ++||++|...++.|++++++|+++ ++.|++|++|.. ...+.
T Consensus 3 ~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~~ 79 (173)
T cd03015 3 KKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHLA 79 (173)
T ss_pred CcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHHH
Confidence 45689998 7776 789999999999999999 899999999999999999999875 799999999853 33344
Q ss_pred HHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 318 FFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 318 ~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
+.+.. .-+++|+..|....+++.|++. .+|+++|||++|+|+..+. +..+ . .+..+++
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~-------~~~~--~-~~~~~~i 149 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV-------NDLP--V-GRSVDET 149 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe-------cCCC--C-CCCHHHH
Confidence 54432 2357888889899999999986 6789999999999999853 2221 1 2234666
Q ss_pred HHHHHHH
Q 011791 386 DGQYNEM 392 (477)
Q Consensus 386 ~~~~~~~ 392 (477)
++.|+.+
T Consensus 150 l~~l~~~ 156 (173)
T cd03015 150 LRVLDAL 156 (173)
T ss_pred HHHHHHh
Confidence 6666654
No 40
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.71 E-value=6.9e-17 Score=140.98 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=101.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++| |++|+.++|.|++++++++ ++.|++|++|. ....++|.+
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHHH
Confidence 345699999 9999999999999999999999998 6999999999999999873 58999999985 567788888
Q ss_pred cCCCceeccCcchh-HHHHHhcCCCC------cceEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDARK-ASLSRKFKVSG------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~iv~~~~ 363 (477)
+++...+++..|.. ..+.+.|++.. .|+++|||++|+|+..+.
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 88766788888875 88999999863 799999999999999853
No 41
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.70 E-value=1.4e-16 Score=140.00 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=101.2
Q ss_pred ccCCCccee-ccCCCceecccCCC-CEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|++++++++++ ++++++|+.| +.+..++|.
T Consensus 4 G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d-~~~~~~~~~ 80 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVD-SPFSLRAWA 80 (149)
T ss_pred CCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCC-CHHHHHHHH
Confidence 344588988 89999999999999 99999888 899999999999999999999865 6999999988 456788999
Q ss_pred hcCCCceeccCcchh--HHHHHhcCCC----Ccc--eEEEECCCCcEEEecc
Q 011791 320 KGMPWLALPFGDARK--ASLSRKFKVS----GIP--MLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~--~~l~~~~~v~----~~P--t~~lid~~G~iv~~~~ 363 (477)
++++ ..+|+..|.. ..+.+.|++. ++| ++++||++|+++..+.
T Consensus 81 ~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 81 EENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred HhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 8887 6788888866 8899999997 333 8999999999999853
No 42
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.70 E-value=4.2e-17 Score=148.54 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=92.7
Q ss_pred hhccCcCCCcee-cCC--CCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 80 SVLTSHSRDFVI-SSD--GRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~--g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
...|.++|+|.+ +.+ |+.++++++ +||+++|+|||+||++|+.++|.|.++++ +| ++||+|+.|++.+..
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence 346888999954 665 577777665 79999999999999999999999988754 35 899999998888888
Q ss_pred HHhhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchh
Q 011791 156 KRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 204 (477)
.++++++. |..+.. +....+.+.|++.++|+++++|++|+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~--D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 113 ISWLKELGNPYALSLF--DGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHHHHHcCCCCceEEE--cCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 88887653 332222 233557789999999999999999999988753
No 43
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.70 E-value=1.2e-16 Score=145.14 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=91.2
Q ss_pred CCCccee-ccCCCceecccCCCCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
..|+|.+ +.+|+.+++++++||++ |+.|||+||++|+.++|.|++++++|+++ ++.|++|++|. +.++.
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHH
Confidence 3489998 99999999999999965 45669999999999999999999999876 69999999752 34678
Q ss_pred HHHHh-cCCCceeccCcc--hhH----HHH------------HhcCCCCcce---EEEECCCCcEEEecc
Q 011791 316 DEFFK-GMPWLALPFGDA--RKA----SLS------------RKFKVSGIPM---LVAIGPSGRTITKEA 363 (477)
Q Consensus 316 ~~~~~-~~~~~~~p~~~d--~~~----~l~------------~~~~v~~~Pt---~~lid~~G~iv~~~~ 363 (477)
++|+. +++ ++||+..+ .+. .+. ..+++.++|+ ++|||++|+|+.+..
T Consensus 97 ~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 97 KEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 88876 555 66787643 111 222 1236789995 699999999999853
No 44
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.70 E-value=1.1e-16 Score=146.97 Aligned_cols=120 Identities=10% Similarity=0.162 Sum_probs=90.2
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~ 153 (477)
.+..+|+|.+ +.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|++| ++.+
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence 4667899955 89999999999999999999999999999999999999999999888 999999975 3566
Q ss_pred HHHHhhcCC--CCccccC---CchhHHH--------HHHHcCcc----cC---CeEEEECCCCCccccch
Q 011791 154 SFKRDLGSM--PWLALPF---KDKSREK--------LARYFELS----TL---PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~--~~~~~~~---~~~~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~~~ 203 (477)
..++++++. +|..+.. ....... +...|++. .+ |+.+|||++|+++.+..
T Consensus 93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 778887754 3333211 1111111 12233332 23 37999999999997664
No 45
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=1.1e-15 Score=142.67 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=107.4
Q ss_pred EEEEEEec---CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 107 TIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 107 ~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
..++.|.+ +||++|+...|.+.++.+.+.+ +++..+.+|.+.. ..+++.|+|
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~---------------------~~l~~~~~V 75 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED---------------------KEEAEKYGV 75 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc---------------------HHHHHHcCC
Confidence 34444666 9999999999999999988832 5666777764321 458899999
Q ss_pred ccCCeEEEECCCCCccc-cchhhHHhhcCCCCCCCChhhHHHHHHHH-HHHhhhhhhhhhhccCCCcceeccCCCc-eec
Q 011791 184 STLPTLVIIGPDGKTLH-SNVAEAIEEHGVGAFPFTPEKFAELAEIQ-RAKEESQTLESVLVSGDLDFVVGKNGGK-VPV 260 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~-~~~~~~i~~~g~~a~P~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l 260 (477)
.++||+++++ +|+.+. +... +| +...+..+.+.. ......+ .+ +... -.+
T Consensus 76 ~~~Pt~~~f~-~g~~~~~~~~G----------~~-~~~~l~~~i~~~~~~~~~~~-------------~L--~~~~~~~l 128 (215)
T TIGR02187 76 ERVPTTIILE-EGKDGGIRYTG----------IP-AGYEFAALIEDIVRVSQGEP-------------GL--SEKTVELL 128 (215)
T ss_pred CccCEEEEEe-CCeeeEEEEee----------cC-CHHHHHHHHHHHHHhcCCCC-------------CC--CHHHHHHH
Confidence 9999999987 565542 2211 01 222222222111 0000000 01 1110 111
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
..+.+..+++.||++||++|+.+.+.++++..+. +++.+..++.+... ++++.
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~-----------------------~~~~~ 181 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENP-----------------------DLAEK 181 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCH-----------------------HHHHH
Confidence 2233445666699999999999998888776653 24666666665443 68899
Q ss_pred cCCCCcceEEEECCCCc
Q 011791 341 FKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~ 357 (477)
|+|.++||+++. .+|+
T Consensus 182 ~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 182 YGVMSVPKIVIN-KGVE 197 (215)
T ss_pred hCCccCCEEEEe-cCCE
Confidence 999999999988 5665
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.70 E-value=1.3e-16 Score=132.65 Aligned_cols=111 Identities=34% Similarity=0.632 Sum_probs=100.6
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHhcCCCc
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWL 325 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~ 325 (477)
+|.+ +.+|+.+++++++||+++|+||++||++|+..++.+.++.+++++. ++.++.|++|.. .+++++++++++ .
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 3556 7899999999999999999999999999999999999999998733 699999999986 899999999988 6
Q ss_pred eeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++..+....+.+.|++.++|+++++|++|+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 778877877889999999999999999999999876
No 47
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.69 E-value=1.3e-16 Score=145.43 Aligned_cols=118 Identities=24% Similarity=0.322 Sum_probs=98.0
Q ss_pred hccCCCccee-c-cCCC--ceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-G-KNGG--KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~-~~g~--~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|+++ +++|++|++|.. ...+
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~-~~~~ 80 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTH-FVHK 80 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHH
Confidence 4556799998 6 4676 68888999999999999 999999999999999999999876 799999999953 4444
Q ss_pred HHHhcC---CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 317 EFFKGM---PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~---~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+.. .-+.||++.|....+++.|||. ..|++++||++|+|+...
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 444332 2366888888889999999986 469999999999999874
No 48
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.69 E-value=4e-17 Score=144.00 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHH
Q 011791 86 SRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 157 (477)
Q Consensus 86 ~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~ 157 (477)
.|+|. .+.+|+++++++++||+|+|+|||+||+ |+.++|.|++++++|+++| +.||+|++|. +.+..++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 56774 4899999999999999999999999999 9999999999999999887 9999999763 3566777
Q ss_pred hhcC-CCCccccCCch---hHHHHHHHcC--cccCC-----------eEEEECCCCCccccchh
Q 011791 158 DLGS-MPWLALPFKDK---SREKLARYFE--LSTLP-----------TLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 158 ~~~~-~~~~~~~~~~~---~~~~l~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 204 (477)
++++ .. +.+|...+ ......+.|+ +..+| +++|||++|+++++...
T Consensus 79 f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 79 FCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 7764 33 22333211 1111233344 35566 79999999999987653
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.69 E-value=2.3e-16 Score=133.92 Aligned_cols=106 Identities=25% Similarity=0.475 Sum_probs=94.1
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHhcCCC
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPW 324 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~ 324 (477)
|+|.+ +.+|+.++++.++||+++|+||++||++|+.+.|.|++++++ +++++|+.|.+ .+++++++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 67888 899999999999999999999999999999999999998776 44788888754 788999999988
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+.+|+..|.+..+.+.|+|.++|++++||++| ++.+
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 67888888888899999999999999999998 7766
No 50
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.68 E-value=1.6e-16 Score=148.22 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=92.3
Q ss_pred hhhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------C
Q 011791 79 RSVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 150 (477)
Q Consensus 79 ~~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~ 150 (477)
....|..+|+|.+ +.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|+.| +
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPG 149 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCC
Confidence 3457889999965 89999999999999999999999999999999999999999999888 999999975 3
Q ss_pred CHHHHHHhh-cC--CCCccccCCchhHHHHHHH-------cC------cccCCeEEEECCCCCccccch
Q 011791 151 EEESFKRDL-GS--MPWLALPFKDKSREKLARY-------FE------LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~-------~~------v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.++..+++ ++ +++..+...+.....+... ++ +...|+.+|||++|+++.+..
T Consensus 150 s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 150 SNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred CHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 445666765 33 2332221111111112122 22 355799999999999998765
No 51
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.68 E-value=3.7e-16 Score=142.71 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=91.5
Q ss_pred hccCcCCCcee-cCCCCeEecC--CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls--~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
-+|..+|+|.+ +.+|+.++++ +++||+++|+||++||++|+.++|.+.++++++ + +.+++|+.| +.++..+
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~ 120 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRR 120 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHH
Confidence 46889999965 8999999995 579999999999999999999999999988653 3 668888854 6677788
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++...-...+. ....+.+.|++..+|+.+++|++|++++..
T Consensus 121 ~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 121 FLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred HHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 8886542211111 235688999999999999999999998764
No 52
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.68 E-value=2.2e-16 Score=142.36 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=102.9
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
-.|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.+++.|.++++++++.+ +.+++|+.|.+.+.+.+++
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHH
Confidence 35788999965 89999999999999999999999999999999999999999999876 9999999999988888888
Q ss_pred cCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++ +.++...+....+.+.|++..+|+++++|++|+++...
T Consensus 114 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 114 NRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred HHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 8654 23333334456788999999999999999999998654
No 53
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.2e-16 Score=132.71 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=106.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
++...|+|.+ +.+|+.++|++++||+|||||| ..++|.|..++-.+.+.+.+|++. +.+|++||.| +....++|.
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~D-s~~~~~~F~ 82 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPD-SPKSHKKFA 82 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHHHH
Confidence 3566799999 9999999999999999999999 589999999999999999999976 7999999999 567899999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~ 362 (477)
++++ ++||+++|.+..+++.|||. ..+++||||++|+|+...
T Consensus 83 ~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 83 EKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 9998 77999999999999999983 357899999999999874
No 54
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.67 E-value=2.8e-16 Score=141.47 Aligned_cols=118 Identities=22% Similarity=0.413 Sum_probs=99.2
Q ss_pred cCcCCCcee-cCCCCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHH
Q 011791 83 TSHSRDFVI-SSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 153 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~ 153 (477)
|..+|+|.+ +.+|+.++++++ +||+++|+||++||+.|..+++.|.+++++|++++ +++|+|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 457888854 889999999998 99999999999999999999999999999998766 9999999985 567
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++++++.... +++..+....+.+.|++..+|+++|+|++|++++...
T Consensus 79 ~~~~~~~~~~~~-~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHGYP-FPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCCCC-ceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 888888765421 3333344567889999999999999999999997653
No 55
>PLN02412 probable glutathione peroxidase
Probab=99.67 E-value=1.3e-16 Score=142.68 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=87.2
Q ss_pred CcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHH
Q 011791 84 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESF 155 (477)
Q Consensus 84 ~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~ 155 (477)
..+|+|.+ +.+|+.+++++++||+++|+|||+||++|+.++|.|++++++|+++| ++||+|+.|. +.+..
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence 56889965 89999999999999999999999999999999999999999999988 9999999863 34444
Q ss_pred HHhh-cCCCCccccCC-----ch-hHHHHHH--------HcC--cccCCeEEEECCCCCccccch
Q 011791 156 KRDL-GSMPWLALPFK-----DK-SREKLAR--------YFE--LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~-~~~~~~~~~~~-----~~-~~~~l~~--------~~~--v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++ ++.. +.+|.. .+ ......+ .++ +...|+.+|||++|+++++..
T Consensus 85 ~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 85 QQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 4443 3321 222221 11 1111111 112 566899999999999998875
No 56
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.67 E-value=3.6e-16 Score=139.97 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=97.0
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. + ++||+||.|.. ...+++
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHH
Confidence 36889999964 8899999999999999999999999 9999999999999999983 4 99999999853 445666
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCcccCC---------eEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDK-SREKLARYFELSTLP---------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~ 203 (477)
.++.....++...+ ....+++.||+...| +++|||++|+|++..+
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 66654322444444 345789999998777 9999999999998875
No 57
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.67 E-value=3.3e-16 Score=136.66 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=95.1
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|+.++|.|++++++++ | +.||+||.|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 4788999955 8999999999999999999999998 6999999999999999974 4 8999999986 44455566
Q ss_pred cCCCCccccCCchhH-HHHHHHcCccc------CCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSR-EKLARYFELST------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~i~~~~~ 203 (477)
+++....++...+.. ..+.+.||+.. .|+++|||++|+|+....
T Consensus 77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 655433444444443 67888999853 799999999999998875
No 58
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.66 E-value=6.2e-16 Score=134.31 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=102.4
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|+|.+ +.+|+.+++++++||+++|+|| ++||++|...+|.|++++++++.+ ++.+++|+.| +....++|.++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhccc
Confidence 478998 9999999999999999999999 789999999999999999999754 6999999998 5577889999884
Q ss_pred CceeccCcchhHHHHHhcCCCCcc---------eEEEECCCCcEEEecc
Q 011791 324 WLALPFGDARKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~P---------t~~lid~~G~iv~~~~ 363 (477)
-..++++.|....+.+.||+...| ++++||++|+|+.++.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEV 127 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEe
Confidence 477888888888999999998766 8999999999999853
No 59
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.66 E-value=7.6e-16 Score=139.53 Aligned_cols=119 Identities=17% Similarity=0.270 Sum_probs=99.3
Q ss_pred hccCCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.. +-+..++++++++||++||+|| +.||+.|..+++.|++++++|+++ +++|++||.|. ....+
T Consensus 4 ~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~-~~~~~ 80 (187)
T PRK10382 4 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDT-HFTHK 80 (187)
T ss_pred cCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCC-HHHHH
Confidence 4566788876 2344567888999999999999 999999999999999999999876 69999999984 45666
Q ss_pred HHHhcC---CCceeccCcchhHHHHHhcCC----CCc--ceEEEECCCCcEEEecc
Q 011791 317 EFFKGM---PWLALPFGDARKASLSRKFKV----SGI--PMLVAIGPSGRTITKEA 363 (477)
Q Consensus 317 ~~~~~~---~~~~~p~~~d~~~~l~~~~~v----~~~--Pt~~lid~~G~iv~~~~ 363 (477)
+|.+.. .-+.||++.|.+..+++.||+ .++ |++++||++|+|+....
T Consensus 81 a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 81 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred HHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 666543 236789999999999999998 366 99999999999998853
No 60
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.65 E-value=5.4e-16 Score=135.07 Aligned_cols=116 Identities=27% Similarity=0.459 Sum_probs=97.4
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhcC-CcEEEEEEeCCC---ChhHHHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFF 319 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~i~~d~---~~~~~~~~~ 319 (477)
.|+|.+ +.+|+.+++++++||++||+||++||++ |...++.|+++++++++++ .++++++|++|. +.+.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 478998 9999999999999999999999999997 9999999999999998753 359999999975 357788999
Q ss_pred hcCCCceeccCcch---hHHHHHhcCCCCc--------------ceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDAR---KASLSRKFKVSGI--------------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~---~~~l~~~~~v~~~--------------Pt~~lid~~G~iv~~~ 362 (477)
++++ ..++++.+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 9886 455555543 4688999997644 5699999999999863
No 61
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.65 E-value=1e-15 Score=141.08 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=106.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEE-EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HH-HH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SF-DE 317 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~-~~ 317 (477)
+...|+|.+ +..| .+++++++||+++| +||++||++|..+++.|++++++|+++ +++|++||+|.... +| ++
T Consensus 5 G~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~ 81 (202)
T PRK13190 5 GQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRD 81 (202)
T ss_pred CCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHh
Confidence 455699999 6666 79999999997766 689999999999999999999999976 79999999995422 33 23
Q ss_pred HHhcCC-CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 318 FFKGMP-WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 318 ~~~~~~-~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
+.+..+ .+.||++.|.+..+++.||+. .+|+++|||++|+|+.... +. .-..++++++++.++
T Consensus 82 ~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~------~~----~~~gr~~~ellr~l~ 151 (202)
T PRK13190 82 IEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY------YP----AETGRNIDEIIRITK 151 (202)
T ss_pred HHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE------eC----CCCCCCHHHHHHHHH
Confidence 334444 267999999999999999984 5899999999999997642 11 012345677777776
Q ss_pred HHH
Q 011791 391 EMA 393 (477)
Q Consensus 391 ~~~ 393 (477)
.+.
T Consensus 152 ~l~ 154 (202)
T PRK13190 152 ALQ 154 (202)
T ss_pred Hhh
Confidence 654
No 62
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.65 E-value=7e-16 Score=134.34 Aligned_cols=116 Identities=27% Similarity=0.505 Sum_probs=96.9
Q ss_pred CCCcee-cCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcCC-CcEEEEEEEcCC---CHHHHHHhh
Q 011791 86 SRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEESFKRDL 159 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~g-~~~~vv~is~D~---~~~~~~~~~ 159 (477)
+|+|.+ +.+|+.+++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|. +.+.+++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 678854 8999999999999999999999999998 9999999999999998764 469999999985 356777777
Q ss_pred cCC--CCccccCCchhHHHHHHHcCccc--------------CCeEEEECCCCCcccc
Q 011791 160 GSM--PWLALPFKDKSREKLARYFELST--------------LPTLVIIGPDGKTLHS 201 (477)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~l~~~~~v~~--------------~P~~~lid~~G~i~~~ 201 (477)
+++ +|..+....+....+++.||+.. .|+++|||++|+++..
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 765 57777666555578999999744 3579999999998864
No 63
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.64 E-value=1.3e-15 Score=141.28 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=111.7
Q ss_pred hhccCCCccee-ccCCCceecccCCCCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--hhHHH
Q 011791 241 VLVSGDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFD 316 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~~~~~ 316 (477)
.++...|+|.+ +.+|+...+++++||++ |+.||++||++|..+++.|++++++|+++ +++|++||+|.. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHH
Confidence 45667799999 88998888899999975 67899999999999999999999999877 699999999964 34567
Q ss_pred HHHhcC--CCceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 317 EFFKGM--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 317 ~~~~~~--~~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
++++++ .-+.||+..|.+..+++.||+. .+|++||||++|+|+.... +... ..++++++++
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~------~p~~----~gr~~~eilr 150 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY------YPQE----VGRNVDEILR 150 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE------cCCC----CCCCHHHHHH
Confidence 777653 1367999999989999999983 6899999999999998742 1111 2345667777
Q ss_pred HHHHH
Q 011791 388 QYNEM 392 (477)
Q Consensus 388 ~~~~~ 392 (477)
.++.+
T Consensus 151 ~l~~l 155 (215)
T PRK13599 151 ALKAL 155 (215)
T ss_pred HHHHh
Confidence 76654
No 64
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.64 E-value=1.9e-15 Score=136.27 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=94.2
Q ss_pred ccCcCCCcee-cCCC----CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--
Q 011791 82 LTSHSRDFVI-SSDG----RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE-- 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g----~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~-- 153 (477)
+|..+|+|.+ +.+| +.+++++++||+++|+|| ++||++|..+++.|+++++++.+.| +.|++||+|....
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHH
Confidence 4788999965 5555 799999999999999999 8999999999999999999999877 9999999986432
Q ss_pred HHHHhhc------CCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLG------SMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+... ..+| +...+....+.+.||+. .+|+++|||++|++++...
T Consensus 79 ~~~~~~~~~~~~~~~~f---~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 79 AWRNTPRKEGGLGKINF---PLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred HHHHhhhhhCCccCcce---eEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 3443332 2333 33344457788999986 5789999999999998875
No 65
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.64 E-value=4.2e-16 Score=140.48 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=91.1
Q ss_pred hccCcCCCcee-cCCCC--eEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGR--KISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~--~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|.+ +.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ ++ ++||+|+.+++.+...
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHH
Confidence 56889999965 77776 4454565 79999999999999999999999887764 34 8999999987777777
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++++++.+.......+....+.+.|++.++|++++||++|+++++..
T Consensus 109 ~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~ 155 (173)
T TIGR00385 109 KFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHA 155 (173)
T ss_pred HHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEe
Confidence 77776542211122233456888999999999999999999998754
No 66
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.63 E-value=1.7e-15 Score=170.47 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=101.0
Q ss_pred ccCCCccee-c--cCCCceec-ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC---C--CChh
Q 011791 243 VSGDLDFVV-G--KNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---D--RDQT 313 (477)
Q Consensus 243 ~~~~p~f~l-~--~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~---d--~~~~ 313 (477)
+...|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+. | .+.+
T Consensus 394 g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~ 471 (1057)
T PLN02919 394 ATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLE 471 (1057)
T ss_pred CCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHH
Confidence 344588876 3 68899988 6899999999999999999999999999999999865 699999974 3 2457
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++++++.+++ +.+|...|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 472 ~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 472 AIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred HHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 8889998887 56788788888999999999999999999999999873
No 67
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.63 E-value=8.1e-16 Score=140.25 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=94.2
Q ss_pred hccCcCCCcee-c-CCCC--eEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--H
Q 011791 81 VLTSHSRDFVI-S-SDGR--KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--E 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~-~~g~--~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~ 153 (477)
++|..+|+|.+ + .+|+ .+++++++||+++|+|| ++||++|..+++.|++++++++++| ++||+||.|... .
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHH
Confidence 67999999965 5 5676 68888999999999999 9999999999999999999999887 999999999643 2
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+......-+.+|...+....+++.||+. ..|+++|||++|++++...
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 2333221111122334444457789999985 4699999999999998764
No 68
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.63 E-value=1.1e-15 Score=135.21 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=95.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
.|..+|+|.+ +.+|+.+++++++||+++|+||++ ||+.|+.+++.|.+++++++++| +++|+|+.|. .+...++.
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~ 82 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFA 82 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHH
Confidence 5888999965 899999999999999999999987 67889999999999999999887 9999999984 56677777
Q ss_pred cCC--CCccccCCchhHHHHHHHcCcccC------------CeEEEECCCCCccccc
Q 011791 160 GSM--PWLALPFKDKSREKLARYFELSTL------------PTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~~ 202 (477)
+++ +|..+ .+....+.+.||+... |+.+|||++|+|+...
T Consensus 83 ~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 83 EKELLNFTLL---SDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HHhCCCCeEE---ECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 754 44444 3334668889998654 6789999999998875
No 69
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.63 E-value=2.2e-15 Score=132.26 Aligned_cols=113 Identities=23% Similarity=0.457 Sum_probs=95.9
Q ss_pred CCccee-ccCCCceecccCC-CCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 DLDFVV-GKNGGKVPVSDLA-GKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~-gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
.|+|.+ +.+|+.++++++. +|++ |++||++||++|+.++|.|++++++++++ +++||+|+.|.. +...+|.++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 478888 8999999999875 4554 55556999999999999999999999865 699999999854 4555777776
Q ss_pred CCceeccCcchhHHHHHhcCCC-----------------------------CcceEEEECCCCcEEEec
Q 011791 323 PWLALPFGDARKASLSRKFKVS-----------------------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~iv~~~ 362 (477)
+ +++|++.|.+..+.+.|++. .+|+.+|||++|+|++.+
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 6 68999999999999999984 799999999999999874
No 70
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.63 E-value=1.2e-15 Score=132.51 Aligned_cols=115 Identities=27% Similarity=0.401 Sum_probs=95.6
Q ss_pred cCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC
Q 011791 85 HSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 162 (477)
Q Consensus 85 ~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~ 162 (477)
++|+|. .+.+|+.+++++++||+++|+|| ++||++|...++.|.++++++.+++ ++||+|+.|. .+...++.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence 468885 48899999999999999999999 5899999999999999999998877 9999999985 46677777754
Q ss_pred CCccccCCchhHHHHHHHcCcccC---------CeEEEECCCCCccccch
Q 011791 163 PWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~~ 203 (477)
. +.++...+....+.+.||+... |+++|+|++|++++...
T Consensus 79 ~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 79 G-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred C-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 4 2333444445678999999888 99999999999988764
No 71
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=3.3e-15 Score=129.78 Aligned_cols=97 Identities=22% Similarity=0.479 Sum_probs=77.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.||++||+|||+||++|+.+.|.+.+++++++++ +.++.|++|.+. ...+.+.|+|
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~---------------------~~~~~~~~~V 74 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK---------------------WLPEIDRYRV 74 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc---------------------cHHHHHHcCC
Confidence 5899999999999999999999999999998754 789999888543 1256789999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
.++|+++||+++|+++.+. .|.. .. ++|.+.+++++++.|.
T Consensus 75 ~~iPt~v~~~~~G~~v~~~-------~G~~----~~---~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 75 DGIPHFVFLDREGNEEGQS-------IGLQ----PK---QVLAQNLDALVAGEPL 115 (142)
T ss_pred CCCCEEEEECCCCCEEEEE-------eCCC----CH---HHHHHHHHHHHcCCCC
Confidence 9999999999999999873 3322 22 5566777777765543
No 72
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.62 E-value=1.7e-15 Score=137.71 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=87.1
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHH
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 153 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~ 153 (477)
+..+|+|.+ +.+|+.+++++++||++ ++.+||+||++|+.++|.|++++++|+++| ++||+|++|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 567899954 89999999999999964 556699999999999999999999999887 9999999752 345
Q ss_pred HHHHhhc-CCCCccccCC-----ch-hHHHHHH------------HcCcccCCe---EEEECCCCCccccch
Q 011791 154 SFKRDLG-SMPWLALPFK-----DK-SREKLAR------------YFELSTLPT---LVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~-----~~-~~~~l~~------------~~~v~~~P~---~~lid~~G~i~~~~~ 203 (477)
...+++. ++. +.+|.. .+ ....+.+ .+++.++|+ .+|||++|+++.+..
T Consensus 95 ~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 95 EIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 6666654 332 222222 11 1112221 235778995 699999999998765
No 73
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.62 E-value=4.7e-15 Score=131.83 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc
Q 011791 246 DLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325 (477)
Q Consensus 246 ~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~ 325 (477)
.++|.+ .+|+.+++++++ ||+||++||++|++++|.|+++++++ +++|++|++|...+ .
T Consensus 55 ~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~-----------~ 113 (181)
T PRK13728 55 PRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGD-----------T 113 (181)
T ss_pred CCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCC-----------C
Confidence 467776 489999999997 77899999999999999999999997 38899999986532 5
Q ss_pred eeccCcc-hhHHHHHhcCC--CCcceEEEECCCCcEEE
Q 011791 326 ALPFGDA-RKASLSRKFKV--SGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 326 ~~p~~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~iv~ 360 (477)
.||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 114 ~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 114 AFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 7787764 55667888995 69999999999999964
No 74
>PRK15000 peroxidase; Provisional
Probab=99.62 E-value=3.7e-15 Score=136.89 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=103.9
Q ss_pred hccCCCccee-cc--CCCc---eecccC-CCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-
Q 011791 242 LVSGDLDFVV-GK--NGGK---VPVSDL-AGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ- 312 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~- 312 (477)
++...|+|.+ +. +|+. ++++++ +||+++|+||+. ||+.|..+++.|++++++|+++ +++|++||+|...
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~ 81 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFV 81 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHH
Confidence 4556799998 54 3453 345554 799999999995 9999999999999999999976 7999999999542
Q ss_pred -hHHHH-HHhcCC--CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 313 -TSFDE-FFKGMP--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 313 -~~~~~-~~~~~~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
..|.+ +.+..+ -+.+|++.|....+++.||+. ++|++++||++|+|+.... +.. + ..+++
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~-------~~~--~-~gr~~ 151 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV-------NDL--P-LGRNI 151 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe-------cCC--C-CCCCH
Confidence 23333 233333 258999999999999999997 7999999999999998742 111 1 12456
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
+++++.++.+
T Consensus 152 ~eilr~l~al 161 (200)
T PRK15000 152 DEMLRMVDAL 161 (200)
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 75
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.62 E-value=2.2e-15 Score=132.31 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=94.6
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCC-CEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+|..+|+|.+ +.+|+.+++++++| |+++|.|| ++||++|+..+|.|+++++++++++ +.+|+|+.|. .+..+++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAW 79 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHH
Confidence 5788999955 88999999999999 99888887 9999999999999999999998877 9999999885 4456666
Q ss_pred hcCCCCccccCCchhH--HHHHHHcCcc----cC--CeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSR--EKLARYFELS----TL--PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~l~~~~~v~----~~--P~~~lid~~G~i~~~~~ 203 (477)
.+++. +.++...+.. ..+.+.||+. ++ |+++|||++|++++...
T Consensus 80 ~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 80 AEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred HHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 66543 2233333333 6788899986 33 48999999999998875
No 76
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.61 E-value=6.8e-15 Score=135.89 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=101.5
Q ss_pred ccCCCccee-ccCCCceecccCCC-CEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAG-KTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+| .+++++++| |++ |+.||++||+.|..+++.|++++++|+++ +++|++||+|.. ...+++.
T Consensus 2 G~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~-~~~~~~~ 77 (203)
T cd03016 2 GDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSV-ESHIKWI 77 (203)
T ss_pred cCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCH-HHHHHHH
Confidence 345689998 6666 689999988 755 55888999999999999999999999876 799999999953 3333333
Q ss_pred h---cC--CCceeccCcchhHHHHHhcCCC----C----cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHH
Q 011791 320 K---GM--PWLALPFGDARKASLSRKFKVS----G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 386 (477)
Q Consensus 320 ~---~~--~~~~~p~~~d~~~~l~~~~~v~----~----~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~ 386 (477)
+ ++ .-+.||++.|.+..+++.||+. + .|++||||++|+|+.... +... ..++.++++
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~------~~~~----~gr~~~ell 147 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY------YPAT----TGRNFDEIL 147 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe------cCCC----CCCCHHHHH
Confidence 2 21 2377899999999999999985 2 457999999999998742 1111 123456676
Q ss_pred HHHHHH
Q 011791 387 GQYNEM 392 (477)
Q Consensus 387 ~~~~~~ 392 (477)
+.++++
T Consensus 148 ~~l~~l 153 (203)
T cd03016 148 RVVDAL 153 (203)
T ss_pred HHHHHH
Confidence 666654
No 77
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.61 E-value=4.3e-15 Score=123.48 Aligned_cols=109 Identities=27% Similarity=0.397 Sum_probs=93.7
Q ss_pred ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHhhcCCCCccccC
Q 011791 91 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPWLALPF 169 (477)
Q Consensus 91 ~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~~~~~~~~~~~~ 169 (477)
.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+.+ +.+++|++|.+ .+.++++++.++ ..+++
T Consensus 5 ~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~~~~ 81 (116)
T cd02966 5 PDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-ITFPV 81 (116)
T ss_pred cCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CCcce
Confidence 368899999999999999999999999999999999999999997555 99999999987 888999998765 33333
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
..+....+.+.|++.++|+++|+|++|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 82 LLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred EEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 334456789999999999999999999988653
No 78
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-14 Score=147.09 Aligned_cols=207 Identities=19% Similarity=0.284 Sum_probs=129.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.++.++|.|+++||++|....|.+.++...+++. +.+..| |.+. ...+++.|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v--d~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV--DCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe--Cchh---------------------hHHHHHhcCC
Confidence 3568999999999999999999999999999874 444444 4332 2568999999
Q ss_pred ccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCceeccc-
Q 011791 184 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSD- 262 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~- 262 (477)
.++|++.++.++..++.... +-+...+.......- .......... .-+.+ .-..+..-.
T Consensus 100 ~gfPtl~~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~--~v~~l--~~~~~~~~~~ 159 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPIDYSG------------PRNAESLAEFLIKEL----EPSVKKLVEG--EVFEL--TKDNFDETVK 159 (383)
T ss_pred ccCcEEEEEcCCCceeeccC------------cccHHHHHHHHHHhh----ccccccccCC--ceEEc--cccchhhhhh
Confidence 99999999987733322211 012222222211110 0000000000 01111 111111101
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.....+++.||+|||++|+.+.|.+.++...++. ...+++..++.+ . ...++..++
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~--~---------------------~~~~~~~~~ 215 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDAT--V---------------------HKSLASRLE 215 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccc--h---------------------HHHHhhhhc
Confidence 1256899999999999999999999999998875 235666666554 2 236889999
Q ss_pred CCCcceEEEECCCCc-EEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 343 VSGIPMLVAIGPSGR-TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 343 v~~~Pt~~lid~~G~-iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
|+++||+.++-++.. +... -..++.+.+...+......
T Consensus 216 v~~~Pt~~~f~~~~~~~~~~---------------~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEEDIYYY---------------SGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ccCCceEEEecCCCcccccc---------------cccccHHHHHHHHHhhcCC
Confidence 999999999955555 2222 1244456676666665544
No 79
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.60 E-value=3.8e-15 Score=134.99 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=96.3
Q ss_pred hhccCcCCCce----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--
Q 011791 80 SVLTSHSRDFV----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 152 (477)
Q Consensus 80 ~~~g~~~p~fl----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~-- 152 (477)
..+|..+|+|. .+.+...+++++++||+++|+|| +.||++|..+++.|.++++++.+.| ++||+||.|...
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~ 79 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTH 79 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHH
Confidence 45789999993 24556778888999999999999 9999999999999999999999888 999999998643
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCc----ccC--CeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFEL----STL--PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~~~ 203 (477)
..|.+....+.-+.+|...+....+++.||+ .++ |+++|||++|+|++...
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 2344333222123445555566889999998 356 99999999999988764
No 80
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.60 E-value=7.6e-15 Score=136.24 Aligned_cols=138 Identities=12% Similarity=0.203 Sum_probs=107.4
Q ss_pred hccCCCccee-ccCCCceec-ccCCCCEEEE-EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPV-SDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~ 316 (477)
++...|+|.+ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|+++ +++|++||+|.... .|.
T Consensus 9 iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 9 IGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWV 85 (215)
T ss_pred CCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHH
Confidence 4566799999 77776 555 5589997665 788999999999999999999999977 79999999996533 466
Q ss_pred HHHhcC-C-CceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 317 EFFKGM-P-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 317 ~~~~~~-~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
+++++. + -+.||++.|.+..+++.||+. ..|++||||++|+|+...... . + ..++++++++
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~------~---~-~gr~~~eilr 155 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP------M---E-IGRNIDEILR 155 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC------C---C-CCCCHHHHHH
Confidence 666642 2 377999999999999999973 479999999999999874311 1 1 2346777777
Q ss_pred HHHHH
Q 011791 388 QYNEM 392 (477)
Q Consensus 388 ~~~~~ 392 (477)
.++.+
T Consensus 156 ~l~al 160 (215)
T PRK13191 156 AIRAL 160 (215)
T ss_pred HHHHh
Confidence 77764
No 81
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.59 E-value=5.3e-15 Score=130.60 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=83.5
Q ss_pred Cce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHHHHHHhh
Q 011791 88 DFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKRDL 159 (477)
Q Consensus 88 ~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~~~~~~~ 159 (477)
+|. .+.+|+.+++++++||+++|+|||+||++|+.++|.|++++++|+++| ++|++|+.+ ++.+...+++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHH
Confidence 453 489999999999999999999999999999999999999999999888 999999952 3456677777
Q ss_pred cC-CCCccccCCc-----hhHHHHHHHcC---cccCCe----EEEECCCCCccccch
Q 011791 160 GS-MPWLALPFKD-----KSREKLARYFE---LSTLPT----LVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~-~~~~~~~~~~-----~~~~~l~~~~~---v~~~P~----~~lid~~G~i~~~~~ 203 (477)
++ .. +.+|... +........|. ...+|+ .+|||++|+++....
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 53 32 2223211 11111111222 235898 999999999998764
No 82
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.59 E-value=9.7e-15 Score=119.81 Aligned_cols=74 Identities=16% Similarity=0.402 Sum_probs=62.7
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.+||+|||+|||+||++|+.+.|.|+++++++ . ++.++.|+.|.+.. ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcC
Confidence 35899999999999999999999999999988 2 47788888775431 236889999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++||++|+ ++|+++.+
T Consensus 69 V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 89999877
No 83
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.59 E-value=8.8e-15 Score=127.02 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=94.2
Q ss_pred CCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCC
Q 011791 86 SRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 163 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~ 163 (477)
+|+|.+ +.+|+++++++++||+++|+|| ++||++|...+|.|.+++++++..+ +.+|+|+.|. .+..+++.+++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhccc
Confidence 578854 8899999999999999999999 7899999999999999999997766 9999999984 455666666552
Q ss_pred CccccCCchhHHHHHHHcCcccCC---------eEEEECCCCCccccchhh
Q 011791 164 WLALPFKDKSREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAE 205 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 205 (477)
-..+++..+....+.+.||+...| +++|||++|++++.....
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 123333344445788999987665 899999999999987543
No 84
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.58 E-value=1.4e-14 Score=137.03 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=106.2
Q ss_pred hhccCCCccee-c-cCC--CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--h
Q 011791 241 VLVSGDLDFVV-G-KNG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--Q 312 (477)
Q Consensus 241 ~~~~~~p~f~l-~-~~g--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~ 312 (477)
.++...|+|.+ + .+| +.++++++ +||++||+|| +.||++|..+++.|++++++|+++ +++|++||+|.. .
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSH 146 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHH
Confidence 45666799997 5 355 46899998 8998888888 899999999999999999999977 799999999963 2
Q ss_pred hHHHH-HHhcC--CCceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 313 TSFDE-FFKGM--PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 313 ~~~~~-~~~~~--~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
..|.+ ..++. .-+.||++.|.+..+++.||+. ..|+++|||++|+|+.... +... ..+++++
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~------~~~~----~gr~v~e 216 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV------YDLG----LGRSVDE 216 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE------eCCC----CCCCHHH
Confidence 23333 22222 2367999999999999999985 5899999999999998753 1111 1235666
Q ss_pred HHHHHHHH
Q 011791 385 IDGQYNEM 392 (477)
Q Consensus 385 l~~~~~~~ 392 (477)
+++.++.+
T Consensus 217 iLr~l~al 224 (261)
T PTZ00137 217 TLRLFDAV 224 (261)
T ss_pred HHHHHHHh
Confidence 76666643
No 85
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=1.4e-14 Score=163.23 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=97.9
Q ss_pred hhccCcCCCcee---cCCCCeEec-CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc---CC--
Q 011791 80 SVLTSHSRDFVI---SSDGRKISV-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---DD-- 150 (477)
Q Consensus 80 ~~~g~~~p~fl~---~~~g~~v~l-s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~---D~-- 150 (477)
...|.++|+|.. ..+|+++++ ++++||+|+|+|||+||+||+.++|.|++++++|++++ |.||+|+. |.
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 345889999954 368999998 68999999999999999999999999999999998877 99999974 33
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 151 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.+.+++++.+.. +.+|...+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 469 ~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 469 DLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred cHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 4566777777554 223333344457889999999999999999999987753
No 86
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.57 E-value=3.4e-13 Score=140.74 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=108.2
Q ss_pred cEEEEEEEcCCCH---HHH----HHhhcCCC--CccccCCch-hHHHHHHHcCcc--cCCeEEEECCCCCccccchhhHH
Q 011791 140 SFEIVLISLDDEE---ESF----KRDLGSMP--WLALPFKDK-SREKLARYFELS--TLPTLVIIGPDGKTLHSNVAEAI 207 (477)
Q Consensus 140 ~~~vv~is~D~~~---~~~----~~~~~~~~--~~~~~~~~~-~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~~~~~i 207 (477)
++.++++..+.+. +.+ ++...+++ ++.+...+. ....+++.||+. .+|++++++.+|...+...
T Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~---- 310 (462)
T TIGR01130 235 PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD---- 310 (462)
T ss_pred CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCC----
Confidence 3556666655443 222 22333333 343333332 345688899997 6999999998872222110
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCC-CcceeccCCCceecccC-CCCEEEEEEeCCCChhhHhHhH
Q 011791 208 EEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD-LDFVVGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLP 285 (477)
Q Consensus 208 ~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-p~f~l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p 285 (477)
....+.+.+..+..........+...+...... ..-+..+.+.++.-.-. .++++||+|||+||++|+.+.|
T Consensus 311 ------~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p 384 (462)
T TIGR01130 311 ------QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAP 384 (462)
T ss_pred ------cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHH
Confidence 002466666766655433332222222111111 11122455555543222 4799999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCc
Q 011791 286 KLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 286 ~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 357 (477)
.+.++++.++....++.++.++++... +.. ++|.++|+++++.++++
T Consensus 385 ~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 385 IYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred HHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccCEEEEEeCCCC
Confidence 999999999862224667766665332 233 89999999999954444
No 87
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=7.6e-15 Score=124.54 Aligned_cols=107 Identities=18% Similarity=0.359 Sum_probs=86.8
Q ss_pred CCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHhhcCCCC
Q 011791 87 RDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPW 164 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~~~~~~~ 164 (477)
|+|. .+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|+.|.+ .+.+.++.+++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 5664 4889999999999999999999999999999999999999876 45788888764 777888777654
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++...+....+.+.|++.++|+++++|++| ++...
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 33444334446789999999999999999998 66543
No 88
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.57 E-value=2.2e-14 Score=132.18 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=105.4
Q ss_pred hccCCCccee-----ccCCCceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 242 LVSGDLDFVV-----GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 242 ~~~~~p~f~l-----~~~g~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
++...|+|.+ +.+|+++++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++||+||+|.... .
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~ 84 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-H 84 (199)
T ss_pred cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-H
Confidence 3556699985 35668999999999999999995 88999999999999999999986 79999999996533 2
Q ss_pred HHHHh---c---CCCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 316 DEFFK---G---MPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 316 ~~~~~---~---~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.++.. . .+-++||++.|.+..+++.||+. .+|+.+|||++|+|+.... +.. + ..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~-------~~~--~-~~r~~~ 154 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV-------NDM--P-VGRNVE 154 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe-------cCC--C-CCCCHH
Confidence 22221 1 22368999999999999999985 4699999999999998742 111 1 234556
Q ss_pred HHHHHHHHH
Q 011791 384 EIDGQYNEM 392 (477)
Q Consensus 384 ~l~~~~~~~ 392 (477)
++++.|+.+
T Consensus 155 e~l~~l~a~ 163 (199)
T PTZ00253 155 EVLRLLEAF 163 (199)
T ss_pred HHHHHHHhh
Confidence 666666543
No 89
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.57 E-value=1.8e-14 Score=118.49 Aligned_cols=71 Identities=11% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++++||+|||+||+||+.+.|.|.++++++++. +.++.|++|... +++..|+|.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V~ 67 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYELY 67 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999998754 677778777654 689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 68 ~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 68 DPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999885
No 90
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.56 E-value=9.6e-15 Score=134.64 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=93.8
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEE-EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--HHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~~~~ 157 (477)
+|..+|+|.+ +.+| .+++++++||+++| +||++||++|..+++.|.+++++++++| ++||+||+|+... +|.+
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence 6889999965 5666 79999999997766 6899999999999999999999999887 9999999997533 3433
Q ss_pred h-hcCCC-CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 158 D-LGSMP-WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~-~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
. .+... .+.+|...+....+++.||+. .+|+++|||++|+|.+..
T Consensus 81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred hHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 2 22222 134555556667899999984 589999999999998765
No 91
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.55 E-value=1.1e-14 Score=134.98 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=98.8
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~~~ 156 (477)
.+|..+|+|.+ +.+|+.+.+++++||++ |++||++||++|..+++.|++++++|+++| ++||+||+|+. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 68999999965 78899888889999975 678999999999999999999999999988 99999999974 34566
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
++++++ .-+.+|...+....+++.||+. .+|+++|||++|+|+....
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 666532 1234555555566789999983 5899999999999988753
No 92
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.55 E-value=1.7e-14 Score=126.54 Aligned_cols=114 Identities=24% Similarity=0.402 Sum_probs=89.9
Q ss_pred CCCcee-cCCCCeEecCCCC-CC-EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC
Q 011791 86 SRDFVI-SSDGRKISVSDLE-GK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 162 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~-gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~ 162 (477)
+|+|.+ +.+|+.++++++. +| +++++||++||++|+.++|.|+++++++++.| ++||+|+.|.... ...+.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhc
Confidence 678854 8899999999875 45 55666679999999999999999999999877 9999999986543 33455443
Q ss_pred CCccccCCchhHHHHHHHcCcc-----------------------------cCCeEEEECCCCCccccch
Q 011791 163 PWLALPFKDKSREKLARYFELS-----------------------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~~ 203 (477)
. +.+|...+....+.+.||+. .+|+.+|||++|+|++...
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 3 34555555567788999984 7999999999999987653
No 93
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.54 E-value=1e-14 Score=130.48 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=85.6
Q ss_pred ccCcCCCceec-----------CCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEE------E
Q 011791 82 LTSHSRDFVIS-----------SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI------V 144 (477)
Q Consensus 82 ~g~~~p~fl~~-----------~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~v------v 144 (477)
+|+++|...+. .+.++++.++++||+++|+|||+||+||+.+.|.|.++ +++| |.+ +
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~ 98 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTT 98 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceE
Confidence 56677665321 23467778889999999999999999999999999988 4445 777 8
Q ss_pred EEEcCCCHHHHHHhhc--------CCCCccccCCchhHHHHHHHcCcccCCeE-EEECCCCCccccchh
Q 011791 145 LISLDDEEESFKRDLG--------SMPWLALPFKDKSREKLARYFELSTLPTL-VIIGPDGKTLHSNVA 204 (477)
Q Consensus 145 ~is~D~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~i~~~~~~ 204 (477)
.|+.|++......+++ ..||..+ ..+..+.+...||+.++|+. +|||++|+++.....
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v--llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G 165 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQV--VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG 165 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceE--EECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC
Confidence 9999986544333333 3455433 33335567889999999988 899999999988753
No 94
>PRK13189 peroxiredoxin; Provisional
Probab=99.54 E-value=5.8e-14 Score=131.06 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=93.4
Q ss_pred hccCCCccee-ccCCCceeccc-CCCCEEE-EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~ 316 (477)
++...|+|.+ +..| .+.+++ ++||+++ ++||++||+.|..+++.|++++++|+++ +++|++||+|.... +|.
T Consensus 11 vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 11 IGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred CCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHH
Confidence 4566799999 6777 477776 5999655 5778999999999999999999999876 79999999996432 233
Q ss_pred HHHhc-CC-CceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEec
Q 011791 317 EFFKG-MP-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~-~~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~ 362 (477)
+.+.+ .+ -+.||++.|.+..+++.||+. .+|++||||++|+|+...
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 32222 22 267899999999999999985 579999999999998774
No 95
>PHA02278 thioredoxin-like protein
Probab=99.54 E-value=4.3e-14 Score=115.33 Aligned_cols=76 Identities=12% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||+||+.+.|.+.++++++.. ...++.|++|.+.. + ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 478999999999999999999999999877543 36788888886520 0 1358999999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
.++||++++ ++|+.+.+.
T Consensus 71 ~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred ccccEEEEE-ECCEEEEEE
Confidence 999999999 789999873
No 96
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=4.7e-14 Score=115.57 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=61.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+|||+||++|+.+.|.+.++++++++. .+.++.++.| .. .+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~~-----------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-TI-----------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-CH-----------------------HHHHHcCC
Confidence 3789999999999999999999999999988743 4677777777 32 46899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999999999 79999887
No 97
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.53 E-value=8.5e-14 Score=125.38 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=70.1
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDE 317 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~ 317 (477)
.++|.+ +++|+.+++++++||++||.|||+||++|. ..+.|++++++|+++ +++|++++++ .+.+++++
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHH
Confidence 467888 999999999999999999999999999996 599999999999876 7999999985 35678899
Q ss_pred HHh-cCCCceeccC
Q 011791 318 FFK-GMPWLALPFG 330 (477)
Q Consensus 318 ~~~-~~~~~~~p~~ 330 (477)
|++ +++ +.||+.
T Consensus 82 f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 82 YCRTTWG-VTFPMF 94 (183)
T ss_pred HHHHccC-CCceeE
Confidence 997 555 567766
No 98
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.6e-14 Score=121.39 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=99.9
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
-+|.++|||. .+.+|+.++|++++||+|+|||+ ..++|.|..++-.+++.+.++.+.| .+|++||.|+ .+..+++
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds-~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDS-PKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCC-HHHHHHH
Confidence 3689999995 59999999999999999999998 5689999999999999999999988 9999999994 4556666
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccc
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 202 (477)
..+.. +.++...+...++++.||+. ..++++|||++|+|.+.-
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 66655 45677777778899999972 358999999999988754
No 99
>PRK15000 peroxidase; Provisional
Probab=99.52 E-value=3.9e-14 Score=130.19 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=93.2
Q ss_pred hhccCcCCCcee-cC--CCCeEe---cCCC-CCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 80 SVLTSHSRDFVI-SS--DGRKIS---VSDL-EGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~--~g~~v~---ls~l-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
..+|..+|+|.+ +. +|+.++ ++++ +||+++|+||+. ||++|..+++.|++++++++++| ++||+||.|+.
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence 357899999965 33 456444 4444 799999999995 99999999999999999999888 99999999965
Q ss_pred H--HHHHHhh-cCCC--CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 152 E--ESFKRDL-GSMP--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~--~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
. ..|.+.+ +... -+.+|...+....+++.||+. .+|+.+|||++|+|++...
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~ 142 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV 142 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe
Confidence 3 3444432 2111 134555555567899999997 6999999999999988654
No 100
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.9e-14 Score=119.32 Aligned_cols=70 Identities=20% Similarity=0.589 Sum_probs=64.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+.||+|+|||+||+||+.+.|.|+++..+|+++ +.+..|++|... +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~-----------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP-----------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc-----------------------chHhhccee
Confidence 789999999999999999999999999999776 888888888654 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+++| ++|+.+.+
T Consensus 115 avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDR 130 (150)
T ss_pred eeeEEEEE-ECCEEeee
Confidence 99999999 79999876
No 101
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=6.9e-14 Score=122.34 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 255 g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
|+++++ +++.||+|||+||++|++++|.|++++++++ +.|++|++|.... ..+|...+..
T Consensus 44 G~~~~l----~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~ 103 (153)
T TIGR02738 44 GRHANQ----DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPAT 103 (153)
T ss_pred chhhhc----CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCc
Confidence 555555 4556999999999999999999999998873 6799999886431 1233332212
Q ss_pred HH-HHHhc---CCCCcceEEEECCCCcEEE
Q 011791 335 AS-LSRKF---KVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 335 ~~-l~~~~---~v~~~Pt~~lid~~G~iv~ 360 (477)
.. +...| ++.++|+++|||++|+++.
T Consensus 104 ~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 104 PEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred hHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 22 33455 8899999999999988654
No 102
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.50 E-value=8.4e-14 Score=131.71 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=95.2
Q ss_pred hhccCcCCCcee-c-CCC--CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--
Q 011791 80 SVLTSHSRDFVI-S-SDG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-- 151 (477)
Q Consensus 80 ~~~g~~~p~fl~-~-~~g--~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-- 151 (477)
..+|..+|+|.+ + .+| +.++++++ +||+++|+|| +.||++|..+++.|++++++++++| ++|++||.|+.
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~ 145 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFS 145 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 478999999964 3 344 56899998 8988888877 8999999999999999999999988 99999999973
Q ss_pred HHHHHHh-hcCC--CCccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 152 EESFKRD-LGSM--PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
...|.+. .++. .-+.+|...+....+++.||+. .+|+.+|||++|+|++...
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 2344442 2221 1234455555567899999985 5899999999999998764
No 103
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.50 E-value=5e-14 Score=125.27 Aligned_cols=95 Identities=20% Similarity=0.371 Sum_probs=75.1
Q ss_pred cCCCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCC
Q 011791 85 HSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 164 (477)
Q Consensus 85 ~~p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~ 164 (477)
+.++|-+ .+|+.+++++++ +|+||++||++|+.++|.|++++++| | ++|++|++|.+.+
T Consensus 54 ~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC-----------
Confidence 4555533 599999999997 77799999999999999999999998 4 8999999986642
Q ss_pred ccccCCch-hHHHHHHHcCc--ccCCeEEEECCCCCccc
Q 011791 165 LALPFKDK-SREKLARYFEL--STLPTLVIIGPDGKTLH 200 (477)
Q Consensus 165 ~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 200 (477)
..+|...+ ....+.+.|++ .++|+++|||++|+++.
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 23333322 23457778995 69999999999999864
No 104
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.49 E-value=1.9e-13 Score=113.78 Aligned_cols=72 Identities=18% Similarity=0.439 Sum_probs=62.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+|||+||++|+.+.|.+.++++++++. ++.+..|++|... .+++.|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHER-----------------------RLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccH-----------------------HHHHHcCC
Confidence 5899999999999999999999999999999753 4777777766443 57899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 78 ~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 78 HSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68988776
No 105
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.49 E-value=8.8e-14 Score=129.13 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=94.6
Q ss_pred hhccCcCCCcee-cCCCCeEec-CCCCCCEEEE-EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--H
Q 011791 80 SVLTSHSRDFVI-SSDGRKISV-SDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--S 154 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~l-s~l~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~ 154 (477)
..+|..+|+|.+ +.+|+ +.+ ++++||+++| +||++||++|..+++.|.+++++++++| ++|++||+|+... .
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~a 83 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIE 83 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHH
Confidence 357999999965 67786 555 5589997665 8899999999999999999999999988 9999999997643 4
Q ss_pred HHHhhcCC-C-CccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSM-P-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
|.+.+++. . -+.+|...+....+++.||+. .+|+.+|||++|+|.+...
T Consensus 84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 141 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILY 141 (215)
T ss_pred HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEe
Confidence 65555421 1 133455555567899999973 3799999999999988654
No 106
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.49 E-value=1e-13 Score=112.95 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++++||+++|+|||+||++|+.+.|.|.++++++++ +.++.|+.+. . ...+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~---------------------~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-I---------------------KPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-C---------------------CHHHHHh
Confidence 346799999999999999999999999999998853 5566664441 1 2368999
Q ss_pred cCCCCcceEEEECCCCc
Q 011791 341 FKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~ 357 (477)
|+|+++||+++++ +|.
T Consensus 68 ~~V~~~PT~~lf~-~g~ 83 (100)
T cd02999 68 YGVVGFPTILLFN-STP 83 (100)
T ss_pred cCCeecCEEEEEc-CCc
Confidence 9999999999995 553
No 107
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.47 E-value=3.6e-13 Score=108.97 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=60.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+++++||+|||+||++|+++.|.++++++.+++. +.++.|+++... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-----------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998653 666767666543 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|++++++ +|+++.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999995 8988765
No 108
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.47 E-value=2.6e-13 Score=125.06 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred hccCcCCCcee-----cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 81 VLTSHSRDFVI-----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 81 ~~g~~~p~fl~-----~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
.+|.++|+|.. +.+|+.+++++++||+++|+||+ .||++|..+++.|.+++++++++| ++||+||.|.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence 46899999952 45678999999999999999995 789999999999999999999988 99999999976432
Q ss_pred --HHHhhcC---CCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 155 --FKRDLGS---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 --~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
|...... ..-+.+|...+...++++.||+. .+|+.+|||++|+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe
Confidence 2211111 11245666666778899999984 3689999999999887653
No 109
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.46 E-value=3.4e-13 Score=110.20 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=64.6
Q ss_pred CCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 254 ~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
+++.+......+++++|+|||+||++|+++.|.+.++++++++. +.+..|++|...
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~--------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR--------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH---------------------
Confidence 33333333334789999999999999999999999999999753 777777777543
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 58999999999999999 78876544
No 110
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.5e-13 Score=110.92 Aligned_cols=69 Identities=25% Similarity=0.583 Sum_probs=60.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+|+|+||+||+.+.|.+.+++.+|.+ +.++.+++|. . .++++.++|+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-~----------------------~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-L----------------------EEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-C----------------------HhHHHhcCce
Confidence 69999999999999999999999999999863 6677777775 2 3689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 74 ~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDE 89 (106)
T ss_pred EeeEEEEE-ECCEEEEE
Confidence 99999999 89998887
No 111
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.45 E-value=2.5e-13 Score=125.52 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=91.0
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCC-CEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--HHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEG-KTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESFK 156 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~~~~ 156 (477)
+|..+|+|.+ +.+| .+++++++| |++ +++||++||+.|..+++.|++++++++++| ++|++||+|... .+|.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 4788999965 6666 589999998 654 558999999999999999999999999888 999999999643 2343
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCcc----c----CCeEEEECCCCCccccch
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFELS----T----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~~~ 203 (477)
+.+... .-+.+|...+....+++.||+. + .|+.+|||++|+|+....
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 333221 1234455555667899999985 2 457999999999987754
No 112
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.44 E-value=1e-12 Score=111.79 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=65.0
Q ss_pred CC-CEEEEEEeCCCChhhHhHhHHHH---HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AG-KTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
.| |+++|+|||+||++|+.+.|.+. ++.+.+++ ++.++.|++|.+.... . ++........+.+
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 37 99999999999999999999885 55566654 4788888887653211 1 1111123567899
Q ss_pred hcCCCCcceEEEECCC-CcEEEec
Q 011791 340 KFKVSGIPMLVAIGPS-GRTITKE 362 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~-G~iv~~~ 362 (477)
.|+|.++||+++++++ |+++.+.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~ 102 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARL 102 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEe
Confidence 9999999999999999 8998873
No 113
>PRK13189 peroxiredoxin; Provisional
Probab=99.43 E-value=5.4e-13 Score=124.60 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=92.3
Q ss_pred hccCcCCCcee-cCCCCeEecCC-CCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--HH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSD-LEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~-l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~~ 155 (477)
.+|..+|+|.+ +.+|+ +++++ ++||++ |++||++||++|..+++.|++++++++++| ++||+||+|+... +|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence 47999999965 66775 77776 599965 557899999999999999999999999887 9999999997543 34
Q ss_pred HHhhcC-CC-CccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGS-MP-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.+ .. -+.+|...+....+++.||+. .+|+++|||++|+|++...
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 443322 11 134455555567899999975 4799999999999987654
No 114
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5e-13 Score=125.17 Aligned_cols=70 Identities=24% Similarity=0.555 Sum_probs=63.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
-+||||+||+|||++|+.++|.|.++..+|+++ +.+..|++|..+ .++..|||+
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-----------------------~vAaqfgiq 96 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-----------------------MVAAQFGVQ 96 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-----------------------hHHHHhCcC
Confidence 579999999999999999999999999999886 777777777655 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+|+| ++|+.|.-
T Consensus 97 sIPtV~af-~dGqpVdg 112 (304)
T COG3118 97 SIPTVYAF-KDGQPVDG 112 (304)
T ss_pred cCCeEEEe-eCCcCccc
Confidence 99999999 89999876
No 115
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.43 E-value=9.3e-13 Score=109.28 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH-HhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~-~~~~ 342 (477)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 4789999999999999999999999999999754 667777666443 466 5899
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++||++++ ++|+...+
T Consensus 82 I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred CcccCEEEEE-ECCccceE
Confidence 9999999999 78875443
No 116
>PRK09381 trxA thioredoxin; Provisional
Probab=99.41 E-value=1.6e-12 Score=107.79 Aligned_cols=70 Identities=27% Similarity=0.581 Sum_probs=61.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.++++++++.++ +.++.+++|... .+.+.|+|+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 789999999999999999999999999998753 788888887554 468889999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 75 GIPTLLLF-KNGEVAAT 90 (109)
T ss_pred cCCEEEEE-eCCeEEEE
Confidence 99999999 79998876
No 117
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.40 E-value=1.6e-12 Score=112.88 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+|||+||++|+.+.|.|.++++.+.+. +.++.|.+|.+.. ..+++.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcC
Confidence 36899999999999999999999999999998754 7888888875421 23678999
Q ss_pred cccCCeEEEECCCCCccccch
Q 011791 183 LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~~ 203 (477)
|.++|++++++++|+++.+..
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEe
Confidence 999999999999999887654
No 118
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.39 E-value=8.1e-13 Score=115.61 Aligned_cols=87 Identities=21% Similarity=0.372 Sum_probs=62.8
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
|+.+++++ +.+|+|||+||+||+.++|.|+++++++ + +.|++|++|.... ..+| ..++.. .
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp-~~~~~~---~ 104 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP-DPLPAT---P 104 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc-cccCCc---h
Confidence 56666654 4599999999999999999999999987 3 7899999986531 1222 111111 1
Q ss_pred HHHHHHc---CcccCCeEEEECCCCCccc
Q 011791 175 EKLARYF---ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 175 ~~l~~~~---~v~~~P~~~lid~~G~i~~ 200 (477)
..+...| ++.++|++++||++|+++.
T Consensus 105 ~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2233455 8899999999999988644
No 119
>PTZ00102 disulphide isomerase; Provisional
Probab=99.38 E-value=9.3e-12 Score=130.57 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++.++|+|||+||++|+.+.|.+.++++.+++.+.++.+..|..+.. ..+++.|++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----------------------~~l~~~~~i 104 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----------------------MELAQEFGV 104 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----------------------HHHHHhcCC
Confidence 578999999999999999999999999998876653455555544432 458899999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|++++++.++.+
T Consensus 105 ~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 105 RGYPTIKFFNKGNPV 119 (477)
T ss_pred CcccEEEEEECCceE
Confidence 999999999866544
No 120
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.38 E-value=5.6e-12 Score=103.60 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+.+.|.|+++++++++.+.++.+..++++.. ..+++.|+|
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 467999999999999999999999999999976433466665655533 257889999
Q ss_pred CCcceEEEECCCCcE
Q 011791 344 SGIPMLVAIGPSGRT 358 (477)
Q Consensus 344 ~~~Pt~~lid~~G~i 358 (477)
.++||++++ .+|.+
T Consensus 71 ~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 71 RGYPTIKLL-KGDLA 84 (104)
T ss_pred ccccEEEEE-cCCCc
Confidence 999999999 45543
No 121
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.37 E-value=3.5e-12 Score=104.82 Aligned_cols=76 Identities=20% Similarity=0.440 Sum_probs=61.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.||++||+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHHH
Confidence 489999999999999999999887 567777764 47777777764321 12468889
Q ss_pred cCCCCcceEEEECC-CCcEEEe
Q 011791 341 FKVSGIPMLVAIGP-SGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~-~G~iv~~ 361 (477)
|+|+++||++++++ +|+++.+
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcc
Confidence 99999999999988 8887766
No 122
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.36 E-value=2e-12 Score=106.01 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=61.3
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+|+|+|||+||+||+.++|.|.++++++ . + +.++.|+.|.+.+ ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH--------------------HHHHHHHcC
Confidence 35799999999999999999999999999998 2 2 7777888775431 135788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
|.++||++++ ++|+++.+.
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred CCcCCEEEEE-eCCeEEEEE
Confidence 9999998887 789887654
No 123
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.36 E-value=5e-12 Score=103.26 Aligned_cols=69 Identities=23% Similarity=0.515 Sum_probs=56.2
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
++|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..++++... .+++.|+
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~ 68 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQEP-----------------------GLSGRFF 68 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCCH-----------------------hHHHHcC
Confidence 3465 689999999999999999999999876532 4667766666433 5788999
Q ss_pred CCCcceEEEECCCCcE
Q 011791 343 VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 343 v~~~Pt~~lid~~G~i 358 (477)
|+++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 78985
No 124
>PRK10996 thioredoxin 2; Provisional
Probab=99.36 E-value=7.4e-12 Score=108.42 Aligned_cols=71 Identities=24% Similarity=0.612 Sum_probs=60.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.++++++.++ +.++.++++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-----------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-----------------------HHHHhcCC
Confidence 4799999999999999999999999999887653 667767665443 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++|+++++ ++|+++.+
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999999 58999877
No 125
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.36 E-value=4.2e-12 Score=103.72 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=58.6
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
+++|+|||+||++|+.+.|.+.++++++++...++.++.|+++... .+++.|+|.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----------------------ELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----------------------hhHhhcCCCcC
Confidence 5999999999999999999999999999763235777766665432 57889999999
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
||++++ ++|+.+.+
T Consensus 75 Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 75 PTLLLF-KDGEKVDK 88 (102)
T ss_pred CEEEEE-eCCCeeeE
Confidence 999999 68886654
No 126
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.36 E-value=2.9e-12 Score=106.10 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=58.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcC---CcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+++++|+|||+||++|+++.|.+.++++++++.. ..+.+..|++|... .+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----------------------~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----------------------DIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----------------------HHHHhC
Confidence 6899999999999999999999999999886532 13556666665443 689999
Q ss_pred CCCCcceEEEECCCCcEE
Q 011791 342 KVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv 359 (477)
+|+++||++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 788854
No 127
>PTZ00062 glutaredoxin; Provisional
Probab=99.35 E-value=2.5e-12 Score=117.34 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=80.6
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
..++++|||+||++|+.+.|.|.++.++|. ++ .++.+|.+ |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~--~F~~V~~d-----------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SL--EFYVVNLA-----------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----Cc--EEEEEccc-----------------------------cCccc
Confidence 457999999999999999999999999874 24 44455521 79999
Q ss_pred cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh-h----hccccccceeeccCCce---
Q 011791 346 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN-V----KHALHEHELVLDRCGVY--- 417 (477)
Q Consensus 346 ~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~--- 417 (477)
+||++++ ++|+.+.+ ..|+++ .+|...+.......+.+ . +..-.+|+++++|++.+
T Consensus 63 vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p 126 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFP 126 (204)
T ss_pred ceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 9999999 79999988 556555 67777777766654432 2 22223899999999765
Q ss_pred eccCCCC
Q 011791 418 SCDGCDE 424 (477)
Q Consensus 418 ~~~~C~~ 424 (477)
.|+.|..
T Consensus 127 ~C~~C~~ 133 (204)
T PTZ00062 127 FCRFSNA 133 (204)
T ss_pred CChhHHH
Confidence 5555553
No 128
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.35 E-value=3.1e-12 Score=122.88 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=69.9
Q ss_pred CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhH
Q 011791 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKA 335 (477)
Q Consensus 256 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 335 (477)
+...+++++|+++||+||++||++|+.+.|.|++++++++ ++|++|++|.... ..+|...+ +.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~~~-d~ 219 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNARP-DA 219 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcccC-CH
Confidence 3456677889999999999999999999999999998873 7899999997542 12444422 34
Q ss_pred HHHHhcCCCCcceEEEECCCCcEEE
Q 011791 336 SLSRKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 336 ~l~~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.+.+.|||.++|+++|++++|+.+.
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999998554443
No 129
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=5.8e-12 Score=103.46 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=59.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|+++... .+++.|+|+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-----------------------SLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-----------------------HHHHHcCCC
Confidence 679999999999999999999999999998643 667777666433 688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999655466655
No 130
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.34 E-value=2.3e-12 Score=108.03 Aligned_cols=73 Identities=26% Similarity=0.599 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|||+|||+||++|+.+.|.+.+....... +..++.|++|.+.+ ...+.|++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~---~~~fv~v~vd~~~~----------------------~~~~~~~~ 72 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISEL---SHNFVMVNLEDDEE----------------------PKDEEFSP 72 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh---cCcEEEEEecCCCC----------------------chhhhccc
Confidence 489999999999999999999999887665432 23467777775431 23456788
Q ss_pred CC--cceEEEECCCCcEEEe
Q 011791 344 SG--IPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~--~Pt~~lid~~G~iv~~ 361 (477)
.+ +||+++++++|+++.+
T Consensus 73 ~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 73 DGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred CCCccceEEEECCCCCCchh
Confidence 76 9999999999999875
No 131
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.34 E-value=6.1e-12 Score=109.76 Aligned_cols=74 Identities=24% Similarity=0.481 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+++.|.++++++++++. ++.++.|++|... ++++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~~-----------------------~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRFP-----------------------NVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3679999999999999999999999999998643 5888888888654 57778888
Q ss_pred CC------cceEEEECCCCcEEEecc
Q 011791 344 SG------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 344 ~~------~Pt~~lid~~G~iv~~~~ 363 (477)
.+ +||++++ ++|+.+.+..
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~~ 125 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARRP 125 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEEe
Confidence 77 9999999 6999998753
No 132
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.34 E-value=6.7e-12 Score=110.78 Aligned_cols=115 Identities=16% Similarity=0.293 Sum_probs=96.9
Q ss_pred cCCCccee-ccC---CCceeccc-CCCCEEEEEEe-CCCChhhHhH-hHHHHHHHHHHHhcCCcE-EEEEEeCCCChhHH
Q 011791 244 SGDLDFVV-GKN---GGKVPVSD-LAGKTILLYFS-AHWCPPCRAF-LPKLIDAYKKIKERNESL-EVVFISSDRDQTSF 315 (477)
Q Consensus 244 ~~~p~f~l-~~~---g~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~~ 315 (477)
...|+|.+ +.+ |+.+++++ ++||+++|+|| +.||+.|..+ ++.|++.+++|.+. +. +|++||.| +....
T Consensus 3 ~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D-~~~~~ 79 (155)
T cd03013 3 DKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVN-DPFVM 79 (155)
T ss_pred CcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECC-CHHHH
Confidence 45699998 664 89999999 58887777776 7899999999 99999999999876 67 69999999 55678
Q ss_pred HHHHhcCCC-ceeccCcchhHHHHHhcCCC------C-----cceEEEECCCCcEEEec
Q 011791 316 DEFFKGMPW-LALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~iv~~~ 362 (477)
++|.++++. ..+|++.|.+..+++.||+. + ...+++|| +|+|+...
T Consensus 80 ~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 80 KAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred HHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 889888886 48999999999999999983 1 36789998 79999874
No 133
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.34 E-value=5.6e-12 Score=102.87 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|||.|+|+||++|+.+.|.|.++++++++. +.++.|++|..+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 4899999999999999999999999999998643 566777777443 68999999
Q ss_pred CCcceEEEECCCCcEEEecc
Q 011791 344 SGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~ 363 (477)
++.||++++ ++|+-+..+-
T Consensus 67 ~amPtfvff-kngkh~~~d~ 85 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVDY 85 (114)
T ss_pred eeCcEEEEE-ECCcEEEEec
Confidence 999999999 7888877653
No 134
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.33 E-value=5e-12 Score=113.91 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred cCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHHHHH
Q 011791 85 HSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFK 156 (477)
Q Consensus 85 ~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~~~~ 156 (477)
.+++|.+ +.+|+.+++++++||+|+|.|||+||++|. .++.|+++|++|+++| ++|++|+++ .+.++..
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence 4566744 889999999999999999999999999996 6999999999999888 999999986 3456667
Q ss_pred Hhhc
Q 011791 157 RDLG 160 (477)
Q Consensus 157 ~~~~ 160 (477)
++.+
T Consensus 81 ~f~~ 84 (183)
T PRK10606 81 TYCR 84 (183)
T ss_pred HHHH
Confidence 7765
No 135
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.32 E-value=7.3e-12 Score=103.73 Aligned_cols=69 Identities=29% Similarity=0.574 Sum_probs=59.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+|||+||++|+++.|.+.++++++++. +.++.++++.+. ...+++.|+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3789999999999999999999999999998653 778888887532 2368899999
Q ss_pred CCcceEEEECCCC
Q 011791 344 SGIPMLVAIGPSG 356 (477)
Q Consensus 344 ~~~Pt~~lid~~G 356 (477)
+++||++++++++
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997666
No 136
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.32 E-value=2e-11 Score=104.47 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++|||.|||+||+||+.+.|.|.++++++++. +.|+.|++|..+ +++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3789999999999999999999999999998764 677888888654 68999999
Q ss_pred CCcceEE-EECCCCc-EEEe
Q 011791 344 SGIPMLV-AIGPSGR-TITK 361 (477)
Q Consensus 344 ~~~Pt~~-lid~~G~-iv~~ 361 (477)
++.|+++ ++ ++|+ .+.+
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEE
Confidence 9887776 77 7887 6666
No 137
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.6e-11 Score=108.46 Aligned_cols=139 Identities=20% Similarity=0.344 Sum_probs=112.0
Q ss_pred hhccCCCccee-cc-CCC---ceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--h
Q 011791 241 VLVSGDLDFVV-GK-NGG---KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--Q 312 (477)
Q Consensus 241 ~~~~~~p~f~l-~~-~g~---~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~ 312 (477)
+++...|+|.. .. .|. +++++++.||+++|+|| +...+.|..++..++++|.+|+++ +.+|+++|+|.. .
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH 81 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSH 81 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHH
Confidence 45667799998 44 553 89999998999999999 789999999999999999999988 799999999963 4
Q ss_pred hHHHHHHhcCCC---ceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCC-HHHH
Q 011791 313 TSFDEFFKGMPW---LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EERM 382 (477)
Q Consensus 313 ~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~-~~~~ 382 (477)
..|.+...+..- +.+|+..|.+.++++.||+- ..-.+|+|||+|+|+.... ++.+ .+++
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v-----------~~~~iGRn~ 150 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV-----------NPLTIGRNV 150 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE-----------ecCCCCcCH
Confidence 567777655543 78999999999999999984 4567999999999987632 1222 5666
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
++++..++.+
T Consensus 151 dEilR~idAl 160 (194)
T COG0450 151 DEILRVIDAL 160 (194)
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 138
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.31 E-value=9.1e-12 Score=103.70 Aligned_cols=95 Identities=19% Similarity=0.447 Sum_probs=65.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.||+++|+||++||++|+.+.+.+.+..+-...-..++.++.++++...+....+....+. +.......++.+.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 4899999999999999999999888654321111124888999888665544455443321 2222334579999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++|++|+++.+
T Consensus 81 ~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp -SSSEEEECTTTSCEEEE
T ss_pred CccCEEEEEcCCCCEEEE
Confidence 999999999999999876
No 139
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.30 E-value=1e-11 Score=102.96 Aligned_cols=73 Identities=18% Similarity=0.436 Sum_probs=59.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~ 342 (477)
.||+++|.||++||++|+++.|.+.++++++++. ++.+..|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 3799999999999999999999999999999843 5888888877532 13554 599
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
|+++||+++++++++...
T Consensus 76 v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 76 LKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCcCCEEEEEcCCCCCce
Confidence 999999999977665443
No 140
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.30 E-value=1.1e-11 Score=103.62 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCEEEEEEeCCCChh--hH--hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 265 GKTILLYFSAHWCPP--CR--AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 265 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
..++|++||++||++ |+ .+.|.+.++++++-.. .++.|+.|++|... .++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~-----------------------~La~~ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDA-----------------------KVAKK 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCH-----------------------HHHHH
Confidence 468999999999987 99 8889999999887221 14778877777554 69999
Q ss_pred cCCCCcceEEEECCCCcEEEe
Q 011791 341 FKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+|+++||++++ ++|+++..
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred cCCccccEEEEE-ECCEEEEe
Confidence 999999999999 79998763
No 141
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.29 E-value=1e-11 Score=102.16 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+|+|||+||+||+.+.|.|.++.+++++. +.++-|.+|..+ .+++.|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCC
Confidence 3578999999999999999999999999999765 677778877653 48899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++||++++. +|+.+.+..
T Consensus 67 ~~iPTf~~fk-~G~~v~~~~ 85 (114)
T cd02954 67 YDPPTVMFFF-RNKHMKIDL 85 (114)
T ss_pred CCCCEEEEEE-CCEEEEEEc
Confidence 9999999996 788887664
No 142
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.9e-12 Score=113.64 Aligned_cols=88 Identities=26% Similarity=0.552 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|.|+|+|+|+||+||++..|.+..+.++|+. .||+.+|-++ .+..+..+||
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~---------------------c~~taa~~gV 72 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDE---------------------CRGTAATNGV 72 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHH---------------------hhchhhhcCc
Confidence 379999999999999999999999999999964 3555655443 3457888999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
+++||++++ .+|+-+.+ +.|+++ ..|++++.+.+.
T Consensus 73 ~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~s 107 (288)
T KOG0908|consen 73 NAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYAS 107 (288)
T ss_pred ccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhc
Confidence 999999999 88988887 778776 677777777664
No 143
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.29 E-value=3.4e-11 Score=98.31 Aligned_cols=70 Identities=30% Similarity=0.770 Sum_probs=60.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|+.+... .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~-----------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENK-----------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSH-----------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccc-----------------------hhhhccCCC
Confidence 79999999999999999999999999999876 3677777666443 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+.+.+
T Consensus 71 ~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCcEEEE
Confidence 99999999 67887765
No 144
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.29 E-value=1.8e-11 Score=99.02 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=57.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.++.+.. ..+.+.|+|.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 355555544422 3688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 58998877
No 145
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.28 E-value=1.9e-11 Score=101.81 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++. ++.++-|+++... .+++.|+|.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~-----------------------~l~~~~~v~ 74 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAP-----------------------FLVEKLNIK 74 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCH-----------------------HHHHHCCCc
Confidence 5789999999999999999999999998874 3677777776543 689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 75 ~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 75 VLPTVILF-KNGKTVDRI 91 (113)
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 799988764
No 146
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.28 E-value=3.5e-11 Score=111.75 Aligned_cols=70 Identities=24% Similarity=0.525 Sum_probs=58.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+++.|.++++++++++. +.+..++++.. ..+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 579999999999999999999999999998753 55555544432 3689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+++++ +|+++..
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999995 8887765
No 147
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.26 E-value=4.2e-11 Score=97.04 Aligned_cols=71 Identities=21% Similarity=0.432 Sum_probs=60.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.+.++.++++++ +.++.++.|... ++...++|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 3789999999999999999999999999888643 777777776443 57889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 66 ~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 66 MGTPTVQFF-KDKELVKE 82 (97)
T ss_pred eeccEEEEE-ECCeEEEE
Confidence 999999999 58998876
No 148
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.26 E-value=1.5e-11 Score=102.69 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=57.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.++++++++. ++.++.|+++ . . .+++.|+|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~--~---------------------~-~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAE--K---------------------A-FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEch--h---------------------h-HHHHhcCCC
Confidence 5899999999999999999999999998874 3555555544 2 2 478899999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 76 ~~Pt~~~f-~~G~~v~~~ 92 (113)
T cd02957 76 VLPTLLVY-KNGELIDNI 92 (113)
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 789998774
No 149
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.26 E-value=2.2e-11 Score=99.56 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCCEEEEEEeCCC--ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.|.+++|.||++| ||+|+.+.|.|.+++++|.++ +.++.|++|... .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHc
Confidence 4788999999997 999999999999999999765 677777777554 689999
Q ss_pred CCCCcceEEEECCCCcEEEec
Q 011791 342 KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++||++++ ++|+++.+.
T Consensus 80 ~V~sIPTli~f-kdGk~v~~~ 99 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGVL 99 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEEE
Confidence 99999999999 799999873
No 150
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.26 E-value=4.3e-11 Score=97.54 Aligned_cols=71 Identities=23% Similarity=0.505 Sum_probs=57.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.+.++++++.++.. .++.++.++.+.. ..+++.|+|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccch-----------------------HHHHHhCCC
Confidence 5899999999999999999999999999988753 1365655555433 368899999
Q ss_pred CCcceEEEECCCCcE
Q 011791 344 SGIPMLVAIGPSGRT 358 (477)
Q Consensus 344 ~~~Pt~~lid~~G~i 358 (477)
+++|+++++++++.+
T Consensus 68 ~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 68 SGFPTIKFFPKGKKP 82 (102)
T ss_pred CcCCEEEEecCCCcc
Confidence 999999999777653
No 151
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.25 E-value=1.7e-11 Score=99.84 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++++||+++|+|||+||++|+.++|.|.++++.+++ +.++.|..+. ....+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~----------------------~~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS----------------------IKPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC----------------------CCHHHHHh
Confidence 356899999999999999999999999999999853 5555554331 11357899
Q ss_pred cCcccCCeEEEECCC
Q 011791 181 FELSTLPTLVIIGPD 195 (477)
Q Consensus 181 ~~v~~~P~~~lid~~ 195 (477)
|+|.++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999854
No 152
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.25 E-value=5.1e-11 Score=99.51 Aligned_cols=75 Identities=25% Similarity=0.497 Sum_probs=58.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++++++..+.+.+..++++.+. ...+++.|+|+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 479999999999999999999999999999754334666666554332 24688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+....
T Consensus 78 ~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 78 GYPTLRYF-PPFSKEAT 93 (114)
T ss_pred CCCEEEEE-CCCCccCC
Confidence 99999999 55554443
No 153
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.24 E-value=6.3e-11 Score=106.59 Aligned_cols=120 Identities=23% Similarity=0.404 Sum_probs=94.1
Q ss_pred ccCcCCCc-eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC---CHHHHH
Q 011791 82 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESFK 156 (477)
Q Consensus 82 ~g~~~p~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~---~~~~~~ 156 (477)
.....++| +.|.+|+++++++++||+++|+|..+.|+ .|...+..|.++++++.+.+.++++|+||+|. +++..+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 34456778 45999999999999999999999999996 89999999999999999877789999999995 356677
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCc----------------ccCCeEEEECCCCCcccc
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFEL----------------STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v----------------~~~P~~~lid~~G~i~~~ 201 (477)
++.+.+ .|..+....+....+++.|++ .+...++|||++|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 777754 466665555555678888875 234588999999998754
No 154
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.24 E-value=6.4e-11 Score=97.02 Aligned_cols=75 Identities=23% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+++.|.++++++.++.. ..+.++.++++.+. ...+++.|+|
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCC
Confidence 3679999999999999999999999999998752 24556656655421 2368899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 74 ~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 74 KGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred ccccEEEEE-eCCCeeEE
Confidence 999999999 67887655
No 155
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=2e-10 Score=96.76 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+|+|+|+|+|+||++|+.+.+.. .++.+.+.+. +.+|.++++...+..+.+.+ .+...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~~---------------~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYMN---------------AAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHHH---------------HHHHh
Confidence 489999999999999999997632 2455555433 55555555543221111111 22336
Q ss_pred cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 011791 341 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 392 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 392 (477)
|++.|+|+++++|++|++++..+. ..+.+ .+.+..+..+.+.++++
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGTY----FPPED--RYGRPGFKTVLEKIREL 121 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeeee----cCCCC--cCCCcCHHHHHHHHHHH
Confidence 799999999999999999988641 11111 13344456666666553
No 156
>PTZ00062 glutaredoxin; Provisional
Probab=99.22 E-value=1.1e-10 Score=106.49 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=49.1
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
..++++|||+||++|+.+.|.|.++.++|.+ +.++-| |.+ |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V--~~d-----------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVV--NLA-----------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEE--ccc-----------------------------cCccc
Confidence 3478999999999999999999999999854 444444 411 88999
Q ss_pred CCeEEEECCCCCccccc
Q 011791 186 LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 186 ~P~~~lid~~G~i~~~~ 202 (477)
+|+++++. +|+.+.+.
T Consensus 63 vPtfv~~~-~g~~i~r~ 78 (204)
T PTZ00062 63 YGVFEFYQ-NSQLINSL 78 (204)
T ss_pred ceEEEEEE-CCEEEeee
Confidence 99999995 88877764
No 157
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.5e-11 Score=102.05 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||+||+...|.|.++..+|.++ |.+.-|.+|+..+ ++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~e-----------------------la~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPE-----------------------LAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccc-----------------------hHhhccee
Confidence 478999999999999999999999999999776 8888888886643 78899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++. +|..+.+.
T Consensus 115 avPtvlvfk-nGe~~d~~ 131 (150)
T KOG0910|consen 115 AVPTVLVFK-NGEKVDRF 131 (150)
T ss_pred eeeEEEEEE-CCEEeeee
Confidence 999999997 66655443
No 158
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-10 Score=118.44 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=138.2
Q ss_pred ChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcCCC-
Q 011791 10 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD- 88 (477)
Q Consensus 10 D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~p~- 88 (477)
||+.+..+|++|+|+|+||+++|..+..++...|.. +.+.+.+..... +........+.
T Consensus 86 d~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~ 145 (383)
T KOG0191|consen 86 DCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPR------------NAESLAEFLIKE--------LEPSVKKLVEGE 145 (383)
T ss_pred CchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcc------------cHHHHHHHHHHh--------hccccccccCCc
Confidence 889999999999999999999999542344333311 112222111110 00011111111
Q ss_pred c--eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCcc
Q 011791 89 F--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA 166 (477)
Q Consensus 89 f--l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~ 166 (477)
. +...+-... .. -....+++.|+++||++|+..+|.+.++...++. +..+++..+..+ .
T Consensus 146 v~~l~~~~~~~~-~~-~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~--~-------------- 206 (383)
T KOG0191|consen 146 VFELTKDNFDET-VK-DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDAT--V-------------- 206 (383)
T ss_pred eEEccccchhhh-hh-ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccc--h--------------
Confidence 0 000100000 00 0135688999999999999999999999998876 334777666544 1
Q ss_pred ccCCchhHHHHHHHcCcccCCeEEEECCCCC-ccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhh-hhhhhhcc
Q 011791 167 LPFKDKSREKLARYFELSTLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ-TLESVLVS 244 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~-i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~-~l~~~~~~ 244 (477)
...++..++|..+|++.++-++.. +....... +...+.+...... ... ....+...
T Consensus 207 -------~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R------------~~~~i~~~v~~~~---~~~~~~~~~~~~ 264 (383)
T KOG0191|consen 207 -------HKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR------------DSDSIVSFVEKKE---RRNIPEPELKEI 264 (383)
T ss_pred -------HHHHhhhhcccCCceEEEecCCCcccccccccc------------cHHHHHHHHHhhc---CCCCCCcccccc
Confidence 245788999999999999987666 22221110 2222222222111 110 00001111
Q ss_pred CCCc-cee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 245 GDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 245 ~~p~-f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
..++ +.. -.+..........-+..++.|+++||.+|....|.+...+....... ..+-...++...-
T Consensus 265 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~--------- 333 (383)
T KOG0191|consen 265 EDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDL--SKIKAAKLDCALL--------- 333 (383)
T ss_pred cCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhcccccc--ccceeeccccccc---------
Confidence 1111 111 01111111111112457889999999999999999998877711111 2222223332220
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEEC
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIG 353 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid 353 (477)
..++....++++|+..+..
T Consensus 334 ------------~~~~~~~~~~~~~~~~~~~ 352 (383)
T KOG0191|consen 334 ------------KSLCQKAIVRGYPTIKLYN 352 (383)
T ss_pred ------------cchhhHhhhhcCceeEeec
Confidence 1256777788999988884
No 159
>PTZ00051 thioredoxin; Provisional
Probab=99.21 E-value=6.9e-11 Score=95.82 Aligned_cols=70 Identities=19% Similarity=0.465 Sum_probs=58.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++++. ++.++.++.+.. ..+++.|+|.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~-----------------------~~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDEL-----------------------SEVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcch-----------------------HHHHHHCCCc
Confidence 7899999999999999999999999988753 356666655532 3689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+++.+.
T Consensus 71 ~~Pt~~~~-~~g~~~~~~ 87 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTL 87 (98)
T ss_pred eeeEEEEE-eCCeEEEEE
Confidence 99999988 799998773
No 160
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.20 E-value=6.8e-11 Score=95.52 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.. ..+++.|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ-----------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998653 66777766643 347889999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|++++++ +|+.+.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999997 8876643
No 161
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.20 E-value=2e-10 Score=93.23 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=59.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.+.+.++.+++..+ +.++.++.+... .+.+.|+|.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999888643 778877776543 578899999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++..
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 78887765
No 162
>PHA02278 thioredoxin-like protein
Probab=99.20 E-value=4.9e-11 Score=97.31 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+|||+||+||+.+.|.+.++.+++..+ ..++.|.+|.+.. ....+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-------------------d~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-------------------DREKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-------------------ccHHHHHHCCC
Confidence 4689999999999999999999999998775433 5678888875421 01347899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++||++++. +|+.+.+..
T Consensus 71 ~~iPT~i~fk-~G~~v~~~~ 89 (103)
T PHA02278 71 MSTPVLIGYK-DGQLVKKYE 89 (103)
T ss_pred ccccEEEEEE-CCEEEEEEe
Confidence 9999999996 688776653
No 163
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.19 E-value=6.7e-11 Score=96.80 Aligned_cols=73 Identities=7% Similarity=0.017 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.|++++|+|||+||++|+.+.|.|.++++.+++.. +.++.++.| + ..+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~-----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T-----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C-----------------------HHHHHHcCC
Confidence 36899999999999999999999999999987543 677777766 2 236789999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++|+++++. +|+.+.+..
T Consensus 70 ~~~Pt~~~~~-~g~~~~~~~ 88 (102)
T cd02948 70 KCEPTFLFYK-NGELVAVIR 88 (102)
T ss_pred CcCcEEEEEE-CCEEEEEEe
Confidence 9999988885 888776553
No 164
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.19 E-value=1.1e-10 Score=109.04 Aligned_cols=130 Identities=12% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCEEEEEEeC---CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSA---HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+...++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+. ...+++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~~ 73 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEKY 73 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHHc
Confidence 3344555766 999999999999999988873 3667777777543 24789999
Q ss_pred CCCCcceEEEECCCCcEEE-eccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc---CCchhhhcc--ccccceeeccCC
Q 011791 342 KVSGIPMLVAIGPSGRTIT-KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK---GWPENVKHA--LHEHELVLDRCG 415 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~--~~~~~~~l~~~~ 415 (477)
+|.++||++++ ++|+.+. + ..|.. +...+..+++.+-.+.. ..+.+.... ..+.+..+..+.
T Consensus 74 ~V~~~Pt~~~f-~~g~~~~~~-------~~G~~----~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~ 141 (215)
T TIGR02187 74 GVERVPTTIIL-EEGKDGGIR-------YTGIP----AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFV 141 (215)
T ss_pred CCCccCEEEEE-eCCeeeEEE-------EeecC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999 5777763 4 22311 23334444444322211 111111111 124556666678
Q ss_pred ceeccCCCCCCCeEEE
Q 011791 416 VYSCDGCDEEGRVWAF 431 (477)
Q Consensus 416 ~~~~~~C~~~g~~w~~ 431 (477)
++||+.|......+.-
T Consensus 142 a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 142 TPTCPYCPYAVLMAHK 157 (215)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 8999999987665543
No 165
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.19 E-value=7.4e-11 Score=104.13 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=89.9
Q ss_pred ccCcCCCcee-cCC---CCeEecCC-CCCCEE-EEEEecCCCccchhh-HHHHHHHHHHHhcCCCcE-EEEEEEcCCCHH
Q 011791 82 LTSHSRDFVI-SSD---GRKISVSD-LEGKTI-GLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESF-EIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~---g~~v~ls~-l~gk~v-ll~F~a~wC~~C~~~-~p~l~~l~~~~~~~g~~~-~vv~is~D~~~~ 153 (477)
+|..+|+|.+ +.+ |+.+++++ ++||++ +++|.+.||+.|..+ ++.+++.++++.+.| . +|++||.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~- 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF- 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-
Confidence 3778999965 554 99999999 588755 555568899999999 999999999999888 8 59999999643
Q ss_pred HHHHhhcCCCC-ccccCCchhHHHHHHHcCcc------c-----CCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPW-LALPFKDKSREKLARYFELS------T-----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~~~ 203 (477)
..+++.++... ..++...+....+++.||+. + ...++||| +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 34445554443 24555556668899999982 1 36779999 799988764
No 166
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.18 E-value=2e-11 Score=117.36 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=69.9
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
.+...+++++|++++|+||++||++|+.++|.|++++++| | ++|++|++|.+... . +|.... .
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~------~-----fp~~~~-d 218 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP------G-----FPNARP-D 218 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc------c-----CCcccC-C
Confidence 4457788899999999999999999999999999999988 4 88999999976421 1 222211 2
Q ss_pred HHHHHHcCcccCCeEEEECCCCCcc
Q 011791 175 EKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
..+++.|||.++|+++|++++|+.+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEE
Confidence 3478899999999999999965443
No 167
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.18 E-value=5.8e-10 Score=116.41 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++++.+.+.+.++.++.|..+.. ..+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----------------------KDLAQKYGV 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----------------------HHHHHhCCC
Confidence 457899999999999999999999999999987665566666655533 348899999
Q ss_pred ccCCeEEEECCCC
Q 011791 184 STLPTLVIIGPDG 196 (477)
Q Consensus 184 ~~~P~~~lid~~G 196 (477)
.++|+++++..++
T Consensus 74 ~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 74 SGYPTLKIFRNGE 86 (462)
T ss_pred ccccEEEEEeCCc
Confidence 9999999986433
No 168
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.18 E-value=1.8e-10 Score=97.24 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=57.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-------hHHHHHHhcCCCceeccCcchhHHH
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~-------~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|+.++|+|+++|||+|+.+.|.|.++.++. +..|+.|++|.+. +++.+|.+.++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~-------------- 83 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG-------------- 83 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHHcC--------------
Confidence 778999999999999999999999998873 3669999998542 12222222221
Q ss_pred HHhcCCCCcceEEEECCCCcEEEec
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
..++|.++||++++ ++|+.+.+.
T Consensus 84 -i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 84 -IPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred -CcccCCCCCEEEEE-eCCeEEEEE
Confidence 11356779999999 899999873
No 169
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.17 E-value=8.3e-11 Score=97.80 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+|++++|+|||+||++|+.+.|.+.++.+++++.+ +.++.|++|.+ ..+++.|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE-----------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc-----------------------HHHHHHcC
Confidence 367999999999999999999999999999997644 77777776643 34788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
|.++|+++++. +|+.+...
T Consensus 77 V~~~Pt~~i~~-~g~~~~~~ 95 (111)
T cd02963 77 AHSVPAIVGII-NGQVTFYH 95 (111)
T ss_pred CccCCEEEEEE-CCEEEEEe
Confidence 99999999995 88776553
No 170
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-10 Score=103.14 Aligned_cols=122 Identities=23% Similarity=0.373 Sum_probs=99.5
Q ss_pred hhhccCcCCCcee-cC-CC---CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-
Q 011791 79 RSVLTSHSRDFVI-SS-DG---RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE- 151 (477)
Q Consensus 79 ~~~~g~~~p~fl~-~~-~g---~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~- 151 (477)
+.++|.++|+|.. .. .| .+++++++.||+++|+|| +...+.|..++..+++.|++++++| .+||+||+|+.
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence 4578999999954 22 45 399999999999999998 4566899999999999999999999 99999999974
Q ss_pred -HHHHHHhhcCCC---CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 152 -EESFKRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 152 -~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
..+|.....+.. -+.+|...+...++++.||+. ++-.++|||++|.+.+..
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~ 140 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHIL 140 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEE
Confidence 456777755433 267777788888999999983 466899999999987654
No 171
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.16 E-value=3.1e-10 Score=102.09 Aligned_cols=119 Identities=26% Similarity=0.457 Sum_probs=95.3
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC---hhHHHHH
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDRD---QTSFDEF 318 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~ 318 (477)
...++|.+ |.+|+.+++++++||++||+|..+.|+ .|...+..|.++.+++.+++.++++++|++|.. ++.+++|
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred ccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 34588999 999999999999999999999999997 999999999999999987666899999999963 5678899
Q ss_pred HhcC--CCceeccCcchhHHHHHhcCCCC----------------cceEEEECCCCcEEEec
Q 011791 319 FKGM--PWLALPFGDARKASLSRKFKVSG----------------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 319 ~~~~--~~~~~p~~~d~~~~l~~~~~v~~----------------~Pt~~lid~~G~iv~~~ 362 (477)
.+.+ .|..+....+....+.+.|++.. ...++||||+|+++...
T Consensus 110 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 110 AKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp HHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred HHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 8865 35556555555667888888641 13689999999998763
No 172
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.15 E-value=8.4e-11 Score=100.00 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=65.1
Q ss_pred CC-CEEEEEEecCCCccchhhHHHHH---HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EG-KTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+| |+|+|+||++||++|+.+.|.+. ++.+.+++ + +.++.|++|.+..... +.........+++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~d~~~~~~~----------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-H--FVVVYINIDGDKEVTD----------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-h--eEEEEEEccCCceeec----------cCCCCccHHHHHH
Confidence 46 89999999999999999998775 56666654 3 8888898886543111 1111123467889
Q ss_pred HcCcccCCeEEEECCC-CCccccch
Q 011791 180 YFELSTLPTLVIIGPD-GKTLHSNV 203 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~-G~i~~~~~ 203 (477)
.|++.++|++++++++ |+++.+..
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEec
Confidence 9999999999999999 88877653
No 173
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.15 E-value=1.1e-10 Score=97.31 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=61.2
Q ss_pred CCCEEEEEEeC-------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 264 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
+|++++|+||| +||++|+.+.|.+.++.++++++ +.++.|++|... ...+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 99999999999999999988643 778888887532 11122346
Q ss_pred HHHhcCCC-CcceEEEECCCCcEEE
Q 011791 337 LSRKFKVS-GIPMLVAIGPSGRTIT 360 (477)
Q Consensus 337 l~~~~~v~-~~Pt~~lid~~G~iv~ 360 (477)
+...|+|+ ++||+++++..++++.
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecc
Confidence 88899998 9999999965555544
No 174
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.15 E-value=3.8e-10 Score=92.23 Aligned_cols=65 Identities=28% Similarity=0.556 Sum_probs=54.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+++.|.+.+++++++.+ +.++.++.+.. ..+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 567999999999999999999999999998754 77777766643 2688999999
Q ss_pred CcceEEEECCC
Q 011791 345 GIPMLVAIGPS 355 (477)
Q Consensus 345 ~~Pt~~lid~~ 355 (477)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999543
No 175
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.14 E-value=2e-10 Score=103.21 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|||+||++||++|+.+.|.|.+++++|. .+.++-|+++.. .++..|+|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch------------------------hhHHhCCCC
Confidence 4599999999999999999999999998874 356666655521 478889999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||+++| ++|+++.+.
T Consensus 135 ~vPTllly-k~G~~v~~~ 151 (175)
T cd02987 135 ALPALLVY-KGGELIGNF 151 (175)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999864
No 176
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.14 E-value=3.1e-10 Score=93.00 Aligned_cols=72 Identities=22% Similarity=0.467 Sum_probs=57.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|.||++||++|+.+.|.+.+++++++.. .++.++.++.+.. ...+++.|+|+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 679999999999999999999999999998732 2466666665541 12689999999
Q ss_pred CcceEEEECCCCcEE
Q 011791 345 GIPMLVAIGPSGRTI 359 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv 359 (477)
++|++++++++|+..
T Consensus 75 ~~P~~~~~~~~~~~~ 89 (105)
T cd02998 75 GFPTLKFFPKGSTEP 89 (105)
T ss_pred CcCEEEEEeCCCCCc
Confidence 999999997665443
No 177
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.13 E-value=1.5e-10 Score=94.42 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+++++. +.+..|++|.. ..+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD-----------------------RMLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc-----------------------HHHHHHcCC
Confidence 4588999999999999999999999999999753 77777777744 247889999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
+++|+++++ ++|+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 71 NSYPSLYVF-PSGMNP 85 (101)
T ss_pred CccCEEEEE-cCCCCc
Confidence 999999999 577654
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.12 E-value=6.6e-10 Score=92.62 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++.++|+||++||++|+.+.|.+.++.+++ + .++++.++.|... .+++.|+|.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~-----------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDK-----------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCH-----------------------HHHHHcCCC
Confidence 567899999999999999999999998775 3 3788888887543 688999999
Q ss_pred CcceEEEECC
Q 011791 345 GIPMLVAIGP 354 (477)
Q Consensus 345 ~~Pt~~lid~ 354 (477)
++||+++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999954
No 179
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.11 E-value=3.4e-10 Score=92.91 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+++|+||++||++|+.+.+.+ .++.+.+++ + +.++.|.++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHHH
Confidence 478999999999999999999877 567777765 3 8888887764321 12457889
Q ss_pred cCcccCCeEEEECC-CCCccccc
Q 011791 181 FELSTLPTLVIIGP-DGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~-~G~i~~~~ 202 (477)
|++.++|+++++++ +|+.+.+.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCccc
Confidence 99999999999998 88876554
No 180
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.09 E-value=3e-10 Score=91.85 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=58.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.|.+.++++.++. ..++.++.++.+.. ..+++.|+|
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-----------------------~~~~~~~~i 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTAN-----------------------NDLCSEYGV 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccch-----------------------HHHHHhCCC
Confidence 356999999999999999999999999998851 12466666665542 368999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++|++++++++|+.+.+
T Consensus 70 ~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 70 RGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCCEEEEEcCCCccccc
Confidence 999999999877644433
No 181
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.08 E-value=4.3e-10 Score=93.30 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH-HHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 182 (477)
++++++|.|||+||++|+.+.|.+.++.+++++. +.++.|..|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 4689999999999999999999999999999754 677777766443 256 5899
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
|.++||+.++ ++|+.
T Consensus 82 I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 82 FFYFPVIHLY-YRSRG 96 (113)
T ss_pred CcccCEEEEE-ECCcc
Confidence 9999999999 56664
No 182
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.07 E-value=6.1e-10 Score=97.21 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++.+++.+.+ +.++.|++|...+ +++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~~-----------------------la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFPN-----------------------VAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCHH-----------------------HHHHcCc
Confidence 35789999999999999999999999999987654 8888888886643 5666777
Q ss_pred cc------CCeEEEECCCCCccccchh
Q 011791 184 ST------LPTLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 184 ~~------~P~~~lid~~G~i~~~~~~ 204 (477)
.. +||++++. +|+.+.+...
T Consensus 101 ~~~~~v~~~PT~ilf~-~Gk~v~r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQ-GGKEVARRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEE-CCEEEEEEec
Confidence 66 99999996 8888776543
No 183
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.06 E-value=7e-10 Score=90.98 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||++|+.+.|.+.++.+++++. +.+..|..|.. ..+++.|+|.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY-----------------------ESLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch-----------------------HHHHHHcCCC
Confidence 568999999999999999999999999998543 67766766633 3478899999
Q ss_pred cCCeEEEECCCCCcccc
Q 011791 185 TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~ 201 (477)
++|+++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999866455443
No 184
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.06 E-value=7e-10 Score=91.05 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.|.++++.+++.+.++.+..+..+.. ..+++.|++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 457899999999999999999999999999976554466655655432 246789999
Q ss_pred ccCCeEEEEC
Q 011791 184 STLPTLVIIG 193 (477)
Q Consensus 184 ~~~P~~~lid 193 (477)
.++|++++++
T Consensus 71 ~~~Pt~~l~~ 80 (104)
T cd03000 71 RGYPTIKLLK 80 (104)
T ss_pred ccccEEEEEc
Confidence 9999999995
No 185
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.05 E-value=4.8e-10 Score=91.72 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=53.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++.+++. ..+.+..++.+.. .+...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 689999999999999999999999999998752 2455555555432 356778899
Q ss_pred CcceEEEECCCC
Q 011791 345 GIPMLVAIGPSG 356 (477)
Q Consensus 345 ~~Pt~~lid~~G 356 (477)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995443
No 186
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.05 E-value=3.5e-10 Score=94.10 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++++||++||++|+.+.+.+.+..+-......++.++.++++++............. +........+.+.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 5899999999999999999888887654422221123889999998766544443332111 1222344679999999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|+++++|++|+++..
T Consensus 81 ~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp -SSSEEEECTTTSCEEEE
T ss_pred CccCEEEEEcCCCCEEEE
Confidence 999999999999998764
No 187
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7e-10 Score=90.64 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|.++|+|+|+||+||+...|.+.++..+|.+ +.++-|++|+ ...+++.++|.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCce
Confidence 69999999999999999999999999999976 4566666664 14478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||++++ ++|+.+...
T Consensus 74 ~~PTf~f~-k~g~~~~~~ 90 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEV 90 (106)
T ss_pred EeeEEEEE-ECCEEEEEE
Confidence 99999999 567665554
No 188
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.04 E-value=8.1e-10 Score=90.26 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+|+|+|+|+||+||+...|.|.++.++|++. +.++-|.+|+.+ .+++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 5799999999999999999999999999999653 566667776543 48899999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
..+|+++++- +|+-+.-+
T Consensus 67 ~amPtfvffk-ngkh~~~d 84 (114)
T cd02986 67 SYIPSTIFFF-NGQHMKVD 84 (114)
T ss_pred eeCcEEEEEE-CCcEEEEe
Confidence 9999999885 56655444
No 189
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.04 E-value=8.5e-10 Score=112.56 Aligned_cols=71 Identities=18% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
..++++||+|||+||++|+.+.|.|.++++++++. ++.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCcc---------------------HHHHHHcC
Confidence 36899999999999999999999999999999754 57888888886531 13346899
Q ss_pred CCCcceEEEECCCCc
Q 011791 343 VSGIPMLVAIGPSGR 357 (477)
Q Consensus 343 v~~~Pt~~lid~~G~ 357 (477)
|+++||++||. +|.
T Consensus 426 I~~~PTii~Fk-~g~ 439 (463)
T TIGR00424 426 LGSFPTILFFP-KHS 439 (463)
T ss_pred CCccceEEEEE-CCC
Confidence 99999999994 443
No 190
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.04 E-value=8e-10 Score=100.62 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|||.||++||++|+.+.|.|.+++++|. .+.++-|+++ . ....|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad--~------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIIST--Q------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhH--H------------------------hHhhCCCC
Confidence 4699999999999999999999999999974 2555555544 2 25679999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||+++| ++|+++.+.
T Consensus 152 ~lPTlliy-k~G~~v~~i 168 (192)
T cd02988 152 NLPTILVY-RNGDIVKQF 168 (192)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999874
No 191
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.03 E-value=8.5e-10 Score=91.25 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.|++++|+|||+||++|+.+.|.+.++++.+.+. +.++.|+.|.+. ...+++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3688999999999999999999999999998753 778888877532 1457889999
Q ss_pred ccCCeEEEECCCCC
Q 011791 184 STLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~~~P~~~lid~~G~ 197 (477)
.++|+++++++++.
T Consensus 73 ~~~Pt~~~~~~~~~ 86 (109)
T cd03002 73 QGFPTLKVFRPPKK 86 (109)
T ss_pred CcCCEEEEEeCCCc
Confidence 99999999987763
No 192
>PRK09381 trxA thioredoxin; Provisional
Probab=99.03 E-value=9.4e-10 Score=91.07 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.|++|... .+++.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 678999999999999999999999999999763 788888777543 256789999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+|+++++ ++|+++.+.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATK 91 (109)
T ss_pred cCCEEEEE-eCCeEEEEe
Confidence 99999999 588877654
No 193
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.4e-10 Score=112.28 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=80.8
Q ss_pred CcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCce
Q 011791 247 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 326 (477)
.+.++.++...+...-.....+||.||||||+||+++.|.+++++..+++.++. |....+|++.+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~--i~LakVDat~~------------- 88 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSP--VKLAKVDATEE------------- 88 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCC--ceeEEeecchh-------------
Confidence 344554444445444444678999999999999999999999999999987444 44456676652
Q ss_pred eccCcchhHHHHHhcCCCCcceEEEECCCCcE-EEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 327 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRT-ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 327 ~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
..++.+|+|+++||+-++ ++|+. ....| ++..+.+...|++...+...
T Consensus 89 --------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G---------------~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 89 --------SDLASKYEVRGYPTLKIF-RNGRSAQDYNG---------------PREADGIVKWLKKQSGPASK 137 (493)
T ss_pred --------hhhHhhhcCCCCCeEEEE-ecCCcceeccC---------------cccHHHHHHHHHhccCCCce
Confidence 479999999999999999 89986 33222 34456677777765544443
No 194
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.02 E-value=7e-10 Score=90.49 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccC
Q 011791 107 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 107 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
.++|+|||+||++|+.+.|.+.++++++++...++.++.|..+.. ..+++.|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----------------------hhhHhhcCCCcC
Confidence 489999999999999999999999999987323377776665533 247789999999
Q ss_pred CeEEEECCCCCccc
Q 011791 187 PTLVIIGPDGKTLH 200 (477)
Q Consensus 187 P~~~lid~~G~i~~ 200 (477)
|+++++ ++|+.+.
T Consensus 75 Pt~~~~-~~g~~~~ 87 (102)
T cd03005 75 PTLLLF-KDGEKVD 87 (102)
T ss_pred CEEEEE-eCCCeee
Confidence 999999 5776543
No 195
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.01 E-value=1.4e-09 Score=90.11 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 182 (477)
+||+++|.||++||++|+.+.|.+.++++.+++.+ +.++.|..|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhcC
Confidence 46899999999999999999999999999998655 888888777421 12444 589
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
++++|++++++++++.
T Consensus 76 v~~~Pti~~f~~~~~~ 91 (109)
T cd02993 76 LKSFPTILFFPKNSRQ 91 (109)
T ss_pred CCcCCEEEEEcCCCCC
Confidence 9999999999877653
No 196
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.01 E-value=6e-10 Score=93.35 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=54.7
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+|+|+|||+||++|+.+.|.+.+..+.... . ..++.|.+|.+.+. ..+.|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~----------------------~~~~~~ 71 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEP----------------------KDEEFS 71 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCc----------------------hhhhcc
Confidence 3579999999999999999999998887665432 2 23555666644211 223566
Q ss_pred ccc--CCeEEEECCCCCccccc
Q 011791 183 LST--LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~--~P~~~lid~~G~i~~~~ 202 (477)
+.+ +|+++++|++|+++.+.
T Consensus 72 ~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 72 PDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred cCCCccceEEEECCCCCCchhh
Confidence 655 99999999999987753
No 197
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.00 E-value=1.6e-09 Score=88.36 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|+ ++|+|||+||++|+.+.|.+.++++.++..+ +.+..|..|.+. .+++.|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-----------------------~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP-----------------------GLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH-----------------------hHHHHcCC
Confidence 455 6799999999999999999999998876444 776666665432 36789999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|+++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999987 67874
No 198
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6e-09 Score=88.13 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=89.0
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
-+|.+ +++|+.+++++++||++||.-.|+-|+.-.+ ...|+.||++|+++ +++|+++.++. +.+++++|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHH
Confidence 46777 9999999999999999999999999998774 55899999999988 89999999863 56789999
Q ss_pred HhcCCCceeccCcch------hHHHHHhc-----------CCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALPFGDAR------KASLSRKF-----------KVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~------~~~l~~~~-----------~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.+.+-..+||+.... ...|.+.+ .|..-=+-+|||++|+||.|..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 997766888875321 11122221 1222237899999999999965
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.8e-10 Score=103.29 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+-++|+|+||++||+||+..+|.|.++...|+++ |.+.-|++|.++. ++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~-----------------------vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM-----------------------VAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh-----------------------HHHHhCc
Confidence 3479999999999999999999999999999987 8888888886643 7899999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
++||+.+++- +|+.+..
T Consensus 96 qsIPtV~af~-dGqpVdg 112 (304)
T COG3118 96 QSIPTVYAFK-DGQPVDG 112 (304)
T ss_pred CcCCeEEEee-CCcCccc
Confidence 9999999884 7776653
No 200
>PRK10996 thioredoxin 2; Provisional
Probab=98.98 E-value=1.9e-09 Score=93.38 Aligned_cols=72 Identities=19% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.|..|.. ..+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE-----------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC-----------------------HHHHHhcCC
Confidence 4799999999999999999999999999887653 77777766543 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++...
T Consensus 105 ~~~Ptlii~~-~G~~v~~~ 122 (139)
T PRK10996 105 RSIPTIMIFK-NGQVVDML 122 (139)
T ss_pred CccCEEEEEE-CCEEEEEE
Confidence 9999999885 88877653
No 201
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.98 E-value=2.6e-09 Score=88.25 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC---CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g---~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|..|.. ..+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHhC
Confidence 5789999999999999999999999999886431 1366666666543 3478999
Q ss_pred CcccCCeEEEECCCCCcc
Q 011791 182 ELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~ 199 (477)
+|+++|+++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999998 577743
No 202
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=94.45 Aligned_cols=134 Identities=23% Similarity=0.456 Sum_probs=104.2
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHH-hcCCcEEEEEEeCCCC---hhHHHHHHh-
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIK-ERNESLEVVFISSDRD---QTSFDEFFK- 320 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~iv~i~~d~~---~~~~~~~~~- 320 (477)
+|.+ +.+|+.+++..++||+++|+|..+.|| .|..++..|.++.+++. ....++++++|++|.+ ++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7888 999999999999999999999999998 99999999999999998 5567899999999864 456777777
Q ss_pred cC--CCceeccCcchhHHHHHhcCCCC--c-------------ceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 321 GM--PWLALPFGDARKASLSRKFKVSG--I-------------PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 321 ~~--~~~~~p~~~d~~~~l~~~~~v~~--~-------------Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.. +|..+....+...++++.|+|.. + ..++++|++|+++.... ++.. -+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~------~~~~--------~~ 194 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYD------YGEP--------PE 194 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEec------CCCC--------hH
Confidence 22 25556655566778889888863 2 25899999999988742 2211 25
Q ss_pred HHHHHHHHHHcC
Q 011791 384 EIDGQYNEMAKG 395 (477)
Q Consensus 384 ~l~~~~~~~~~~ 395 (477)
++.+.++.++++
T Consensus 195 ~i~~~l~~l~~~ 206 (207)
T COG1999 195 EIAADLKKLLKE 206 (207)
T ss_pred HHHHHHHHHhhc
Confidence 666777766543
No 203
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.96 E-value=2.8e-09 Score=89.79 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHH---HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++|+|+|+|++.||++|+.+...+- ++.+.+.+. +-+|-+..|.... .+. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~----------------------~~~-~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK----------------------NLS-P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC----------------------CcC-c
Confidence 4899999999999999999887652 233333332 4334444442210 000 1
Q ss_pred cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 341 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.+ .++||++|+|++|+++.+- ..+++...+.+.+.+++.|.+-+++.+
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred cC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 23 5899999999999998763 446777777788888888888777644
No 204
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.95 E-value=7.7e-09 Score=80.70 Aligned_cols=62 Identities=19% Similarity=0.406 Sum_probs=50.6
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 347 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P 347 (477)
.+..||++||++|+.+.|.+++++++++.. +.++.|+++.+. ++.+.|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 356899999999999999999999988643 777777776544 467889999999
Q ss_pred eEEEECCCCcE
Q 011791 348 MLVAIGPSGRT 358 (477)
Q Consensus 348 t~~lid~~G~i 358 (477)
++++ +|+.
T Consensus 56 t~~~---~g~~ 63 (82)
T TIGR00411 56 AIVI---NGDV 63 (82)
T ss_pred EEEE---CCEE
Confidence 9886 5654
No 205
>PLN02309 5'-adenylylsulfate reductase
Probab=98.95 E-value=3.3e-09 Score=108.30 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=56.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~ 342 (477)
.++++||+|||+||++|+.+.|.+.+++++|+.. ++.++.|++|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc----------------------hHHHHhhCC
Confidence 5899999999999999999999999999998754 5778777777332 24564 699
Q ss_pred CCCcceEEEECCC
Q 011791 343 VSGIPMLVAIGPS 355 (477)
Q Consensus 343 v~~~Pt~~lid~~ 355 (477)
|+++||++||.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999443
No 206
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.95 E-value=8.9e-09 Score=94.98 Aligned_cols=115 Identities=23% Similarity=0.464 Sum_probs=94.4
Q ss_pred Cc-eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHh-cCCCcEEEEEEEcCC---CHHHHHHhhc-
Q 011791 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLK-GKGESFEIVLISLDD---EEESFKRDLG- 160 (477)
Q Consensus 88 ~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~g~~~~vv~is~D~---~~~~~~~~~~- 160 (477)
+| +.+.+|+++++..++||+++|+|..+.|| .|..++..|..+.+++. ..+.++++++|++|. +++..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 56 55999999999999999999999999997 89999999999999999 667789999999985 3556677777
Q ss_pred CC--CCccccCCchhHHHHHHHcCccc---------------CCeEEEECCCCCccccc
Q 011791 161 SM--PWLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 ~~--~~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~ 202 (477)
.. .|..+........++++.|++.. ...++++|++|+++..-
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 22 37777776667778888888742 34678999999887654
No 207
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.94 E-value=3.8e-09 Score=85.50 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+++||++||++|+...|.+.++.+++.+. +.++.|..|.+. .+.+.+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 4689999999999999999999999999988653 777777776443 36789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 66 ~~vPt~~i~~-~g~~v~~~ 83 (97)
T cd02949 66 MGTPTVQFFK-DKELVKEI 83 (97)
T ss_pred eeccEEEEEE-CCeEEEEE
Confidence 9999999995 78877554
No 208
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.94 E-value=7.7e-09 Score=81.88 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=57.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.+.+.++.++ . .++.++.++.+... .+.+.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~-----------------------~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENP-----------------------ELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCCh-----------------------hHHHhcCcc
Confidence 48899999999999999999999998877 2 35788888877543 578899999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 57776655
No 209
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.94 E-value=3.1e-09 Score=91.02 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+|+|||+||+||+...|.|.++.+++++. +.|+-|.+|..+ .+++.|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3589999999999999999999999999999775 677788888664 38899999
Q ss_pred ccCCeEEEECCCCC-cccc
Q 011791 184 STLPTLVIIGPDGK-TLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~-i~~~ 201 (477)
.+.|+++++=++|. .+.+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEEECCeEEEEE
Confidence 98877774445776 4443
No 210
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.93 E-value=2.4e-09 Score=89.21 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCCEEEEEEec-------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+|++|+|+||| +||+||+...|.|.++.+++++. +.++-|.+|.... ..+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------------w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------------WRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------------ccCcchh
Confidence 57899999999 99999999999999999998743 6778888775431 0111245
Q ss_pred HHHHcCcc-cCCeEEEECCCCCccccc
Q 011791 177 LARYFELS-TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 177 l~~~~~v~-~~P~~~lid~~G~i~~~~ 202 (477)
+...|+|. ++||+++++..++++..+
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchh
Confidence 77899998 999999997666666554
No 211
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.91 E-value=6.2e-09 Score=86.88 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+++++....+.+..|..+.+. ...+++.|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 379999999999999999999999999998754323555555443221 13578899999
Q ss_pred cCCeEEEECCCC
Q 011791 185 TLPTLVIIGPDG 196 (477)
Q Consensus 185 ~~P~~~lid~~G 196 (477)
++|+++++.+..
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999997654
No 212
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.90 E-value=5e-09 Score=97.79 Aligned_cols=95 Identities=19% Similarity=0.368 Sum_probs=81.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
...|+|.|||.||+.++.+.|.+.+.+++++++.++-++|+.++|++.+ ..++.+|.|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 5689999999999999999999999999999988888999999999874 4799999999
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+||+-++ .+|.+..+.- .| .+.++.|.+.+++.+.
T Consensus 72 KyPTlKvf-rnG~~~~rEY------Rg-------~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREY------RG-------QRSVEALIEFIEKQLS 107 (375)
T ss_pred cCceeeee-eccchhhhhh------cc-------chhHHHHHHHHHHHhc
Confidence 99999999 8999888642 22 4556777777776654
No 213
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.90 E-value=6.5e-09 Score=110.46 Aligned_cols=76 Identities=18% Similarity=0.445 Sum_probs=58.8
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
..+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++.+.+ ...++.
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~ 527 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALL 527 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHH
Confidence 34589999999999999999998764 45555553 36677777664321 134788
Q ss_pred HhcCCCCcceEEEECCCCcEEE
Q 011791 339 RKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
++|++.++||++++|++|+++.
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCcc
Confidence 9999999999999999999863
No 214
>PTZ00051 thioredoxin; Provisional
Probab=98.89 E-value=5.7e-09 Score=84.47 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.+.++.+++.+ +.++.|..+.. ..+++.|++.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL-----------------------SEVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch-----------------------HHHHHHCCCc
Confidence 57899999999999999999999999887642 45555544322 3578899999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++|+++++ ++|+++.+..
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred eeeEEEEE-eCCeEEEEEe
Confidence 99998777 6888876653
No 215
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.88 E-value=7.1e-09 Score=83.73 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||++|+.+.|.|.++.+++.. ++.++.|..+.. ..+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 58999999999999999999999999988722 255555543321 3478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|++++++ +|+++.+.
T Consensus 68 ~~Pt~~~~~-~g~~~~~~ 84 (97)
T cd02984 68 AVPTFVFFR-NGTIVDRV 84 (97)
T ss_pred cccEEEEEE-CCEEEEEE
Confidence 999999996 78877654
No 216
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.87 E-value=8.3e-09 Score=83.94 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=57.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.+.+.++.+.+++.+ ++.++.+..|.. ..+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch-----------------------HHHHHhCCC
Confidence 57899999999999999999999999999987653 366555555432 447889999
Q ss_pred ccCCeEEEECCCCC
Q 011791 184 STLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~~~P~~~lid~~G~ 197 (477)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999998775
No 217
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.87 E-value=8e-09 Score=84.53 Aligned_cols=73 Identities=21% Similarity=0.374 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCC--CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.|..++|+||++| ||+|+...|.|.++.++|.++ +.++-|..|.+. .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHc
Confidence 3567899999997 999999999999999999876 677777777553 488999
Q ss_pred CcccCCeEEEECCCCCccccch
Q 011791 182 ELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+|.++||++++. +|+++.+..
T Consensus 80 ~V~sIPTli~fk-dGk~v~~~~ 100 (111)
T cd02965 80 GVLRTPALLFFR-DGRYVGVLA 100 (111)
T ss_pred CCCcCCEEEEEE-CCEEEEEEe
Confidence 999999999996 788877653
No 218
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.86 E-value=1.1e-07 Score=87.26 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=92.1
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcC-CCcEEEEEEEcCC---CHHHHHHhhcCCC-
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGK-GESFEIVLISLDD---EEESFKRDLGSMP- 163 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-g~~~~vv~is~D~---~~~~~~~~~~~~~- 163 (477)
|+|.+|+.+.-.++.||+++|||-.+.|| .|..++..|.++.+.+.++ |.+..-|||++|. +.+...++++...
T Consensus 124 L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~p 203 (280)
T KOG2792|consen 124 LVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHP 203 (280)
T ss_pred EEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcCh
Confidence 66999999999999999999999999998 8999999999999998865 5556689999996 6677888888653
Q ss_pred -CccccCCchhHHHHHHHcCccc---------------CCeEEEECCCCCccccch
Q 011791 164 -WLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 164 -~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.-..+.-..+++.|.|-- .=.++||||+|..+...+
T Consensus 204 kllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 204 KLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred hhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 4555555566678899998722 225789999998775443
No 219
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.85 E-value=1.9e-08 Score=92.07 Aligned_cols=135 Identities=22% Similarity=0.358 Sum_probs=103.4
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCC---ChhHHHHHHh
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEVVFISSDR---DQTSFDEFFK 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~---~~~~~~~~~~ 320 (477)
-.|.| +.+|+.++-.+|.||++||||..+.|| .|-.++..|.++.+++.++ +..+.-+||++|. +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 35777 999999999999999999999999999 8999999999999998865 2233468999987 5678889999
Q ss_pred cCC--CceeccCcchhHHHHHhcCCC--Ccc-------------eEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 321 GMP--WLALPFGDARKASLSRKFKVS--GIP-------------MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 321 ~~~--~~~~p~~~d~~~~l~~~~~v~--~~P-------------t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
+.. .+.++-..+.-..+++.|.|. ..| .++||||+|+.+...|++ .+.+
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN--------------~~~~ 265 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN--------------YDAD 265 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc--------------CCHH
Confidence 774 355555556667889999884 223 479999999998765532 2235
Q ss_pred HHHHHHHHHHcC
Q 011791 384 EIDGQYNEMAKG 395 (477)
Q Consensus 384 ~l~~~~~~~~~~ 395 (477)
++.+.|.+.+..
T Consensus 266 ~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 266 ELADSILKHVAS 277 (280)
T ss_pred HHHHHHHHHHHh
Confidence 566666655443
No 220
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=94.82 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=55.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|..+.. ..+++.|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 578999999999999999999999999998753 55555544322 3478899999
Q ss_pred cCCeEEEECCCCCccc
Q 011791 185 TLPTLVIIGPDGKTLH 200 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~ 200 (477)
++|++++++ +|+.+.
T Consensus 106 ~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQ 120 (224)
T ss_pred cCCEEEEEE-CCEEEE
Confidence 999999998 677554
No 221
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.84 E-value=1.6e-08 Score=82.66 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|.. ..+++.|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999865 66776666543 2588899999
Q ss_pred --CcceEEEECC
Q 011791 345 --GIPMLVAIGP 354 (477)
Q Consensus 345 --~~Pt~~lid~ 354 (477)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999965
No 222
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.82 E-value=1.3e-08 Score=83.12 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+.+++.+ .+.++.|..+.+ ....+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~---------------------~~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP---------------------EHDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC---------------------ccHHHHHhCCC
Confidence 35789999999999999999999999999987533 255555554431 12457889999
Q ss_pred ccCCeEEEECCCCCccc
Q 011791 184 STLPTLVIIGPDGKTLH 200 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~ 200 (477)
.++|+++++. +|+++.
T Consensus 74 ~~~Pt~~~~~-~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYFE-NGKFVE 89 (104)
T ss_pred ccccEEEEEe-CCCeeE
Confidence 9999988775 677543
No 223
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.81 E-value=2.8e-08 Score=83.73 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|+|+|+|+|+||++|+.+.+.. .++.+.+.+. |.+|-|..+..++..+.+ .......
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~---------------~~~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIY---------------MNAAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHH---------------HHHHHHh
Confidence 469999999999999999876522 2455555443 777766665543221111 1123346
Q ss_pred cCcccCCeEEEECCCCCccccch
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
|++.++|+++++|++|++++...
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeee
Confidence 79999999999999999998763
No 224
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.81 E-value=1.2e-08 Score=84.96 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.|.++.+++.+ +.++-|..+.. .+++.|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh------------------------HHHHhcCCC
Confidence 57899999999999999999999999998853 44554544311 478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++. +|+.+.+.
T Consensus 76 ~~Pt~~~f~-~G~~v~~~ 92 (113)
T cd02957 76 VLPTLLVYK-NGELIDNI 92 (113)
T ss_pred cCCEEEEEE-CCEEEEEE
Confidence 999999885 78877654
No 225
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.81 E-value=1.8e-08 Score=82.20 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++++++++. +.++.+..|.. ..+++.|++.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 467999999999999999999999999988754 66776765532 3478899999
Q ss_pred cCCeEEEECCC
Q 011791 185 TLPTLVIIGPD 195 (477)
Q Consensus 185 ~~P~~~lid~~ 195 (477)
++|++++++.+
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999754
No 226
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.80 E-value=2e-08 Score=81.39 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=57.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.+.+.++.+.+.+. +.++.|..|.+. .+.+.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 468999999999999999999999999888643 778777766442 367899999
Q ss_pred cCCeEEEECCCCCcccc
Q 011791 185 TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~ 201 (477)
.+|+++++ ++|+.+..
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 57775543
No 227
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.80 E-value=2.3e-08 Score=83.25 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+||++||++|+...|.|.++.+++.+ +.++-|..|.. ..+++.|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~-----------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA-----------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC-----------------------HHHHHHCCC
Confidence 357899999999999999999999999988753 56666666644 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
..+|+++++. +|+.+.+.
T Consensus 74 ~~vPt~l~fk-~G~~v~~~ 91 (113)
T cd02989 74 KVLPTVILFK-NGKTVDRI 91 (113)
T ss_pred ccCCEEEEEE-CCEEEEEE
Confidence 9999999986 78777654
No 228
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.80 E-value=2.3e-08 Score=81.77 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=56.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+.++.. .++.++.+..+.+ ...+++.|++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 578999999999999999999999999998733 2366666655541 13478899999
Q ss_pred cCCeEEEECCCCC
Q 011791 185 TLPTLVIIGPDGK 197 (477)
Q Consensus 185 ~~P~~~lid~~G~ 197 (477)
++|++++++++|+
T Consensus 75 ~~P~~~~~~~~~~ 87 (105)
T cd02998 75 GFPTLKFFPKGST 87 (105)
T ss_pred CcCEEEEEeCCCC
Confidence 9999999987764
No 229
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.78 E-value=2e-08 Score=84.03 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=55.9
Q ss_pred CEEEEEEecCCCcc--ch--hhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFSMSSYKA--SA--EFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++++||++||+| |+ ...|.+.++..++-+.+ ++.++-|.+|.+. .+++.|
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~-----------------------~La~~~ 83 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDA-----------------------KVAKKL 83 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCH-----------------------HHHHHc
Confidence 58999999999988 99 77788888888873221 2777778777553 489999
Q ss_pred CcccCCeEEEECCCCCccc
Q 011791 182 ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~ 200 (477)
||.++||++++. +|+++.
T Consensus 84 ~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 84 GLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred CCccccEEEEEE-CCEEEE
Confidence 999999999996 788664
No 230
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.77 E-value=5.3e-09 Score=97.25 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 245 ~~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
..|.++.|++.+-.... ....++|.||||||+||+++.|.+.+...++++- +..|-.-.+|.+.
T Consensus 25 kgpt~VeDLddkFkdnk--dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi--g~PikVGKlDaT~------------ 88 (468)
T KOG4277|consen 25 KGPTAVEDLDDKFKDNK--DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI--GLPIKVGKLDATR------------ 88 (468)
T ss_pred CCchhhhhhhHHhhhcc--cCCeEEEEeechhhhhcccccchhHHhCcchhhc--CCceeeccccccc------------
Confidence 33555555544322111 1468999999999999999999999999888876 4555555666554
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
-..++..|+|+|+||+.++ ++|-.+..
T Consensus 89 ---------f~aiAnefgiqGYPTIk~~-kgd~a~dY 115 (468)
T KOG4277|consen 89 ---------FPAIANEFGIQGYPTIKFF-KGDHAIDY 115 (468)
T ss_pred ---------chhhHhhhccCCCceEEEe-cCCeeeec
Confidence 2368999999999999999 55555543
No 231
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.77 E-value=3.5e-08 Score=80.28 Aligned_cols=69 Identities=19% Similarity=0.452 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+|+++||++|+.+.|.|.++.+.+.+ + +.++.|..+.. ..+++.|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~-----------------------~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN-----------------------KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS-----------------------HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc-----------------------chhhhccCCC
Confidence 58999999999999999999999999999987 3 77777766644 3488999999
Q ss_pred cCCeEEEECCCCCccc
Q 011791 185 TLPTLVIIGPDGKTLH 200 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~ 200 (477)
++|+++++. +|+...
T Consensus 71 ~~Pt~~~~~-~g~~~~ 85 (103)
T PF00085_consen 71 SVPTIIFFK-NGKEVK 85 (103)
T ss_dssp SSSEEEEEE-TTEEEE
T ss_pred CCCEEEEEE-CCcEEE
Confidence 999999996 555444
No 232
>PHA02125 thioredoxin-like protein
Probab=98.75 E-value=4.1e-08 Score=75.37 Aligned_cols=57 Identities=26% Similarity=0.606 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+++|||+||++|+.+.|.|.++. +.++-|+.|.. .++++.|+|.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 68999999999999999986531 23444443332 36899999999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
++ +|+.+.+
T Consensus 50 ~~----~g~~~~~ 58 (75)
T PHA02125 50 LV----NTSTLDR 58 (75)
T ss_pred EE----CCEEEEE
Confidence 87 5666654
No 233
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.75 E-value=4.3e-08 Score=79.04 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+.++.. .++.++.|+.+.. ..+++.|++.
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-----------------------~~~~~~~~i~ 70 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN-----------------------NDLCSEYGVR 70 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch-----------------------HHHHHhCCCC
Confidence 458999999999999999999999999998621 2267666665532 4578999999
Q ss_pred cCCeEEEECCCCC
Q 011791 185 TLPTLVIIGPDGK 197 (477)
Q Consensus 185 ~~P~~~lid~~G~ 197 (477)
++|++++++++|+
T Consensus 71 ~~Pt~~~~~~~~~ 83 (101)
T cd02961 71 GYPTIKLFPNGSK 83 (101)
T ss_pred CCCEEEEEcCCCc
Confidence 9999999998764
No 234
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.74 E-value=4.3e-08 Score=81.65 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=52.2
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
+.++|+||++||++|+...|.|.++.+.+ +. ++++.|..|..+ .+++.|++.+
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~-----------------------~l~~~~~v~~ 75 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDK-----------------------EKAEKYGVER 75 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCH-----------------------HHHHHcCCCc
Confidence 56889999999999999999999998775 32 777778777542 4788999999
Q ss_pred CCeEEEECCC
Q 011791 186 LPTLVIIGPD 195 (477)
Q Consensus 186 ~P~~~lid~~ 195 (477)
+|++++++.+
T Consensus 76 vPt~~i~~~g 85 (113)
T cd02975 76 VPTTIFLQDG 85 (113)
T ss_pred CCEEEEEeCC
Confidence 9999999754
No 235
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.74 E-value=1.5e-07 Score=78.51 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=54.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++|+++|+|+++||++|+.+.... .++.+.+++. +|++..|.+..+ ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e-------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSE-------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCcc-------------------HHHHHHH
Confidence 489999999999999999987643 3344445443 444444433211 2467889
Q ss_pred cCCCCcceEEEECC-CCcEEEe
Q 011791 341 FKVSGIPMLVAIGP-SGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~-~G~iv~~ 361 (477)
|++.++|+++++|+ +|+++.+
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEE
Confidence 99999999999999 8999987
No 236
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.71 E-value=3.4e-08 Score=75.96 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=47.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
.|.||++||++|+.+.|.+.++.+++..+ +++ +.+| +. ..+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~-~~-----------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVT-DM-----------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeC-CH-----------------------HHHHHcCCCcCCE
Confidence 37899999999999999999999988643 555 4555 22 1256699999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 999 7887743
No 237
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.67 E-value=9e-08 Score=71.61 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=49.3
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|+++||++|+.+.+.|+++.+.. +++++..++++.++ ++.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~-----------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP-----------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH-----------------------hHHHHcCCcccCE
Confidence 57899999999999999998886543 24778878777544 5788999999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
+++ +|+++..
T Consensus 56 i~i---~~~~~~~ 65 (67)
T cd02973 56 IVI---NGKVEFV 65 (67)
T ss_pred EEE---CCEEEEe
Confidence 865 4666654
No 238
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.7e-08 Score=82.36 Aligned_cols=116 Identities=21% Similarity=0.314 Sum_probs=92.7
Q ss_pred hhhhhhccCCCccee-ccCCCceecccCCCC-EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh
Q 011791 237 TLESVLVSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313 (477)
Q Consensus 237 ~l~~~~~~~~p~f~l-~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~ 313 (477)
.+.-..+...|||+| |.+|+.++|..+.|+ +|+++|| +...|.|.+..-.+..-|++++.. +.+|++++.|.. .
T Consensus 60 s~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s-~ 136 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDS-A 136 (211)
T ss_pred ceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCch-H
Confidence 334445666799999 999999999999875 8888888 567899999999999999999875 589999999954 5
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc-------eEEEECCCC
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP-------MLVAIGPSG 356 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P-------t~~lid~~G 356 (477)
..++|..++. +.+.++.|+..++.+.+|+...| ..++++++|
T Consensus 137 sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 137 SQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred HHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 6667766655 56667789899999999987654 567776654
No 239
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.64 E-value=7e-08 Score=79.83 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCCEEEEEEeC--CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+.+.+||.|+| |||+ . .|.+.+|+.++...... |+...+|.+.. ....+.+|+.+|
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~--v~lakVd~~d~----------------~~~~~~~L~~~y 74 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDD--LLVAEVGIKDY----------------GEKLNMELGERY 74 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCc--eEEEEEecccc----------------cchhhHHHHHHh
Confidence 46889999999 7777 2 24444444444322112 44455554210 000135799999
Q ss_pred CCC--CcceEEEECCCCc
Q 011791 342 KVS--GIPMLVAIGPSGR 357 (477)
Q Consensus 342 ~v~--~~Pt~~lid~~G~ 357 (477)
+|+ ++||+.|+ ++|.
T Consensus 75 ~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 75 KLDKESYPVIYLF-HGGD 91 (116)
T ss_pred CCCcCCCCEEEEE-eCCC
Confidence 999 99999999 5563
No 240
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.63 E-value=1.5e-07 Score=76.84 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.+.++.+.+++. .++.+..|..+.. .+...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 578999999999999999999999999998773 2266665655421 245677889
Q ss_pred cCCeEEEECCCC
Q 011791 185 TLPTLVIIGPDG 196 (477)
Q Consensus 185 ~~P~~~lid~~G 196 (477)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999997655
No 241
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.62 E-value=1e-07 Score=85.60 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||+||+.+.|.|.++..+|.. +.++-|..|.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch------------------------hhHHhCCCC
Confidence 45999999999999999999999999998852 55555555421 267889999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||++++. +|+++.+.
T Consensus 135 ~vPTlllyk-~G~~v~~~ 151 (175)
T cd02987 135 ALPALLVYK-GGELIGNF 151 (175)
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999885 78887654
No 242
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.62 E-value=1.5e-07 Score=79.44 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE-- 182 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 182 (477)
|+.++|+|+++|||+|+.+.|.|.++.++. + ..++.|.+|.+... .+... ..-..+.+.|+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~--~~~y~vdvd~~~~~-----------~~~~~-~~~~~~~~~~~i~ 85 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT---K--APIYYIDSENNGSF-----------EMSSL-NDLTAFRSRFGIP 85 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc---C--CcEEEEECCCccCc-----------CcccH-HHHHHHHHHcCCc
Confidence 577899999999999999999999998872 2 56888988854310 00000 01123445544
Q ss_pred --cccCCeEEEECCCCCccccch
Q 011791 183 --LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 --v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.++|+++++. +|+.+.+..
T Consensus 86 ~~i~~~PT~v~~k-~Gk~v~~~~ 107 (122)
T TIGR01295 86 TSFMGTPTFVHIT-DGKQVSVRC 107 (122)
T ss_pred ccCCCCCEEEEEe-CCeEEEEEe
Confidence 56699999886 888776653
No 243
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.62 E-value=1.1e-07 Score=97.35 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+|||+||++|+.+.|.+.++.++|++.+ +.++.|.+|.+.. ....+.|+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~I 426 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQL 426 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcCC
Confidence 67899999999999999999999999999998765 7788888875421 113468999
Q ss_pred ccCCeEEEECCC
Q 011791 184 STLPTLVIIGPD 195 (477)
Q Consensus 184 ~~~P~~~lid~~ 195 (477)
.++||++++..+
T Consensus 427 ~~~PTii~Fk~g 438 (463)
T TIGR00424 427 GSFPTILFFPKH 438 (463)
T ss_pred CccceEEEEECC
Confidence 999999999754
No 244
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.6e-07 Score=79.65 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=92.2
Q ss_pred ccCcCCCc----eecCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHH
Q 011791 82 LTSHSRDF----VISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EES 154 (477)
Q Consensus 82 ~g~~~p~f----l~~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~ 154 (477)
+..+.|+| +++..-+.++|++++||+|+++|+. .+--.|..++-.+...+.++++.+ -+|+++|+|+. .-+
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLA 83 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhh
Confidence 34566787 4577778999999999999999984 455689999999999999999987 89999999964 234
Q ss_pred HHHhhcCC---CCccccCCchhHHHHHHHcCc----cc--CCeEEEECCCCCcccc
Q 011791 155 FKRDLGSM---PWLALPFKDKSREKLARYFEL----ST--LPTLVIIGPDGKTLHS 201 (477)
Q Consensus 155 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v----~~--~P~~~lid~~G~i~~~ 201 (477)
|...-.+. .-+.+|...+...++++.||| .+ +-.+++||++|.+...
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 44443332 235678888888999999998 33 5578999999987663
No 245
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.6e-07 Score=77.31 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=87.8
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
-+|.. +++|+.++++.++||++||.--|+.|+.-...-..|++|+++|+++ +++|++..++. ..+++..|
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHH
Confidence 67887 9999999999999999999999999999998888999999999987 79999998863 34678888
Q ss_pred HhcCCCceeccCcc------hhHHHHHhc----------CCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALPFGDA------RKASLSRKF----------KVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p~~~d------~~~~l~~~~----------~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+....-..+|+... ....+.+.+ +|..-=+-+|+|++|+++.|.+
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 87554454554321 111222222 1222236899999999999975
No 246
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.51 E-value=4.9e-07 Score=70.40 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=47.4
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
.+..||++||++|+...|.|.++.+.++.. +.++.|..+.+. .+.+.||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 356799999999999999999999888643 777778776543 256789999999
Q ss_pred eEEE
Q 011791 188 TLVI 191 (477)
Q Consensus 188 ~~~l 191 (477)
++++
T Consensus 56 t~~~ 59 (82)
T TIGR00411 56 AIVI 59 (82)
T ss_pred EEEE
Confidence 9886
No 247
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.48 E-value=5.3e-07 Score=71.48 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.++++..-+..|+++||++|....+.+.++.+.+ +++++..++++... +++..
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~-----------------------e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQ-----------------------DEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCH-----------------------HHHHH
Confidence 3566777888999999999999999998887764 24778877777443 57899
Q ss_pred cCCCCcceEEEECCCCcEEEe
Q 011791 341 FKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+|.++|++++ +|+++..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999974 6887765
No 248
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.47 E-value=8.9e-07 Score=82.18 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=64.8
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+++-|++|+.+.|++|+.+.|.|..+.++| +++|+.||+|.... ..||.... +..+++.++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~l~ 180 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKRLG 180 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC-CHHHHHHcC
Confidence 34678899999999999999999999999998 48899999996531 23333322 456888999
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
|..+|+++|+++++....
T Consensus 181 v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 181 VKVTPALFLVNPNTKKWY 198 (215)
T ss_pred CCcCCEEEEEECCCCeEE
Confidence 999999999999884443
No 249
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.46 E-value=3.6e-07 Score=71.40 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.||+++|+|+++||++|+.+...+ .++.+.+.++ +..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 389999999999999999998777 3444445544 555555554
No 250
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.3e-07 Score=84.62 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+.--+|.|+|+|.|.||+||+...|.+..+..+|++. ||+-+|.++ ++..+..
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~a------VFlkVdVd~---------------------c~~taa~ 69 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGA------VFLKVDVDE---------------------CRGTAAT 69 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCccc------EEEEEeHHH---------------------hhchhhh
Confidence 3345699999999999999999999999999999653 555555332 2446778
Q ss_pred cCcccCCeEEEECCCCC
Q 011791 181 FELSTLPTLVIIGPDGK 197 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~ 197 (477)
+||+++||++++. +|.
T Consensus 70 ~gV~amPTFiff~-ng~ 85 (288)
T KOG0908|consen 70 NGVNAMPTFIFFR-NGV 85 (288)
T ss_pred cCcccCceEEEEe-cCe
Confidence 9999999999886 443
No 251
>PLN02309 5'-adenylylsulfate reductase
Probab=98.44 E-value=6.3e-07 Score=91.74 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 182 (477)
++++++|+|||+||++|+.+.|.+.++.++|++.+ +.++.|+.|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 58899999999999999999999999999998665 777777776221 22454 699
Q ss_pred cccCCeEEEECCC
Q 011791 183 LSTLPTLVIIGPD 195 (477)
Q Consensus 183 v~~~P~~~lid~~ 195 (477)
|.++||++++.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999654
No 252
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.43 E-value=6.1e-07 Score=95.51 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=57.1
Q ss_pred CCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
.+||+|+|+|||+||++|+.+.+.. .++.++++ + +.++-|.++++.+ ....+.+
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~-------------------~~~~l~~ 528 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA-------------------EDVALLK 528 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh-------------------hhHHHHH
Confidence 3589999999999999999887754 45666664 2 6666666654321 2246888
Q ss_pred HcCcccCCeEEEECCCCCcc
Q 011791 180 YFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~ 199 (477)
.|++.++|+++++|++|+++
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HcCCCCCCEEEEECCCCCCc
Confidence 99999999999999999875
No 253
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-06 Score=75.07 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=88.5
Q ss_pred eeccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--hHHHHHHhcCC---
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TSFDEFFKGMP--- 323 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~--- 323 (477)
+++..-+.++|++++||+|++.|| ..+--.|-.+.-.+.+.+.+|+.. +-+|+++|+|..- -.|...-++.+
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 346677899999999999999999 467778999999999999999976 7899999999532 23333333333
Q ss_pred CceeccCcchhHHHHHhcCCC----C--cceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVS----G--IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~----~--~Pt~~lid~~G~iv~~~ 362 (477)
-+++|++.|.+.++++.|||- | +-.+++||++|.++...
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 366999999999999999983 4 45699999999887643
No 254
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.40 E-value=1.1e-06 Score=69.28 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=53.8
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
++++|+||++||++|+.+.+.+.++.+. ..+ +.++.|+.+.. ..+.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~--~~~~~i~~~~~-----------------------~~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPK--VKFVKVDVDEN-----------------------PELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCC--ceEEEEECCCC-----------------------hhHHHhcCccc
Confidence 7899999999999999999999999887 222 77777777643 34678899999
Q ss_pred CCeEEEECCCCCccc
Q 011791 186 LPTLVIIGPDGKTLH 200 (477)
Q Consensus 186 ~P~~~lid~~G~i~~ 200 (477)
+|++++++ +|+.+.
T Consensus 64 ~P~~~~~~-~g~~~~ 77 (93)
T cd02947 64 IPTFLFFK-NGKEVD 77 (93)
T ss_pred ccEEEEEE-CCEEEE
Confidence 99999986 555443
No 255
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.39 E-value=1.4e-06 Score=79.50 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||++|+.+.|.|.++..+|.. +.++-|..+ . ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad--~------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST--Q------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH--H------------------------hHhhCCCC
Confidence 46899999999999999999999999999853 445545443 1 13689999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
.+||++++. +|+++.+.+
T Consensus 152 ~lPTlliyk-~G~~v~~iv 169 (192)
T cd02988 152 NLPTILVYR-NGDIVKQFI 169 (192)
T ss_pred CCCEEEEEE-CCEEEEEEe
Confidence 999999885 888877654
No 256
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.39 E-value=2e-05 Score=84.20 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 102 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 102 ~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++++.++.|+...|..|......|.++. .+.++ +.+..+..+. ...+++.|
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~---i~~~~~~~~~-----------------------~~~~~~~~ 415 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK---LNSEAVNRGE-----------------------EPESETLP 415 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc---EEEEEecccc-----------------------chhhHhhc
Confidence 456677777888777777765555554444 23332 5554433322 24467899
Q ss_pred CcccCCeEEEECCCCC---ccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCce
Q 011791 182 ELSTLPTLVIIGPDGK---TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 258 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~---i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~ 258 (477)
++...|++.+++.+|. +.+..+ |...+ +..|....-. +..+.+ . ++.+..
T Consensus 416 ~v~~~P~~~i~~~~~~~~~i~f~g~------------P~G~E-f~s~i~~i~~----------~~~~~~--~--l~~~~~ 468 (555)
T TIGR03143 416 KITKLPTVALLDDDGNYTGLKFHGV------------PSGHE-LNSFILALYN----------AAGPGQ--P--LGEELL 468 (555)
T ss_pred CCCcCCEEEEEeCCCcccceEEEec------------CccHh-HHHHHHHHHH----------hcCCCC--C--CCHHHH
Confidence 9999999999976654 444332 22222 2222211100 000000 0 010000
Q ss_pred -ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 259 -PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 259 -~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
.+..+.++.-+-.|.+++|++|......++++..+. ++++.-.|.....+ ++
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~----~~i~~~~i~~~~~~-----------------------~~ 521 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN----PNVEAEMIDVSHFP-----------------------DL 521 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC----CCceEEEEECcccH-----------------------HH
Confidence 122333444455668999999999888777776663 24666666655333 68
Q ss_pred HHhcCCCCcceEEEECCCCcEEEe
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+..|+|.++|++++ ||+++..
T Consensus 522 ~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 522 KDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHhCCceecCEEEE---CCEEEEe
Confidence 88999999999887 4666654
No 257
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=3.1e-07 Score=93.21 Aligned_cols=71 Identities=30% Similarity=0.579 Sum_probs=57.1
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
+.-+|.||++||++|+++.|.+.++++.+..-.+-+.|..|++-.+. +..+++.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 57889999999999999999999999998765444555555554333 467999999999
Q ss_pred cceEEEECCCCc
Q 011791 346 IPMLVAIGPSGR 357 (477)
Q Consensus 346 ~Pt~~lid~~G~ 357 (477)
+|++.++.++-+
T Consensus 117 ~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 117 YPTLRYFPPDSQ 128 (606)
T ss_pred CceeeecCCccc
Confidence 999999977743
No 258
>smart00594 UAS UAS domain.
Probab=98.36 E-value=3.5e-06 Score=71.15 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+|+++|+|+++||++|+.+.... .++.+.+... +-++.++++... ...++..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~---fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN---FIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC---EEEEEecCCChh---------------------HHHHHHh
Confidence 389999999999999999987653 2333444332 433334443222 2468999
Q ss_pred cCCCCcceEEEECCCC
Q 011791 341 FKVSGIPMLVAIGPSG 356 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G 356 (477)
|++.++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999997
No 259
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.36 E-value=1.4e-06 Score=71.05 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=55.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
|+++++.|+++||++|....|.+.++.++++++ +.++.|..|.. ..+++.||+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999864 67766665532 3478899998
Q ss_pred --cCCeEEEECCC
Q 011791 185 --TLPTLVIIGPD 195 (477)
Q Consensus 185 --~~P~~~lid~~ 195 (477)
++|++++++.+
T Consensus 66 ~~~~P~~~~~~~~ 78 (103)
T cd02982 66 EEDLPVIAIINLS 78 (103)
T ss_pred hhhCCEEEEEecc
Confidence 99999999863
No 260
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2e-06 Score=73.45 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=79.3
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC-EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
-.|...|||.+ |.||+.++|.++.|+ +|+++|+ +...|.|....-.+..-|++++..+ .+|+++|.|+... .+.
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~s-qKa 140 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSAS-QKA 140 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchHH-HHH
Confidence 46899999954 999999999999876 7777777 3455789888888899999999988 9999999996532 233
Q ss_pred hhc--CCCCccccCCchhHHHHHHHcCcccCC-------eEEEECCCC
Q 011791 158 DLG--SMPWLALPFKDKSREKLARYFELSTLP-------TLVIIGPDG 196 (477)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G 196 (477)
+.. ++|+.-+.+ ..+++.+.+|+...| ..++++..|
T Consensus 141 F~sKqnlPYhLLSD---pk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 141 FASKQNLPYHLLSD---PKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred hhhhccCCeeeecC---cchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 333 345444433 345677888875544 445555443
No 261
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.32 E-value=3.7e-06 Score=79.47 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=74.3
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+++-|++||.+.|++|.++.|.++.+.++| +++|+.||+|.... ..||.... +..+++.+|
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l~ 210 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHLG 210 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccC-ChHHHHhcC
Confidence 34678899999999999999999999999998 48899999997531 23444332 445788999
Q ss_pred CCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 343 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
|..+|+++|++++.+....- .+|.- + .++|.+.+...+.
T Consensus 211 v~~~Pal~Lv~~~t~~~~pv------~~G~i----S---~deL~~Ri~~v~~ 249 (256)
T TIGR02739 211 VKYFPALYLVNPKSQKMSPL------AYGFI----S---QDELKERILNVLT 249 (256)
T ss_pred CccCceEEEEECCCCcEEEE------eeccC----C---HHHHHHHHHHHHh
Confidence 99999999999985544331 23322 2 3556666665543
No 262
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.32 E-value=3.2e-06 Score=69.01 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=55.1
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 310 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~ 310 (477)
+|.+ +++|+.++++.++||++||.-.|+-|+.-. ....|++|+++|+++ +++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 5677 999999999999999999999999999998 788999999999987 79999999864
No 263
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.29 E-value=3.4e-06 Score=62.97 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|+++||++|+...+.|.++.+.+. ++++..+.+|.++ .+++.||+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~-----------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFP-----------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCH-----------------------hHHHHcCCcccCE
Confidence 567999999999999999888865432 2777777766443 3677899999999
Q ss_pred EEEECCCCCccc
Q 011791 189 LVIIGPDGKTLH 200 (477)
Q Consensus 189 ~~lid~~G~i~~ 200 (477)
+++ +|+++.
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 866 455443
No 264
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.27 E-value=3e-06 Score=65.11 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=44.9
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
|.||++||++|....|.+.++.+++... +++ +.+|+ .+ .+..|++.++|++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~~-~~-----------------------~a~~~~v~~vPti 53 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVTD-MN-----------------------EILEAGVTATPGV 53 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeCC-HH-----------------------HHHHcCCCcCCEE
Confidence 7899999999999999999999988543 555 44442 11 1456899999998
Q ss_pred EEECCCCCccc
Q 011791 190 VIIGPDGKTLH 200 (477)
Q Consensus 190 ~lid~~G~i~~ 200 (477)
++ +|+.+.
T Consensus 54 ~i---~G~~~~ 61 (76)
T TIGR00412 54 AV---DGELVI 61 (76)
T ss_pred EE---CCEEEE
Confidence 88 777663
No 265
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.26 E-value=2.1e-07 Score=57.49 Aligned_cols=28 Identities=46% Similarity=1.158 Sum_probs=14.2
Q ss_pred eccCCCCCCCe-EEEEcCCCCCCcccccc
Q 011791 418 SCDGCDEEGRV-WAFSCDECDFCLHPNCA 445 (477)
Q Consensus 418 ~~~~C~~~g~~-w~~~~~~~~~~~~~~~~ 445 (477)
.|+.|++.+.+ |.|+|.+|||.||..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 68999999999 99999999999999996
No 266
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.25 E-value=6.2e-06 Score=77.47 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=72.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++-|++||.+.|++|.++.|.|+.+.++| ++.|+.||+|.... ..||.... +......++|
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l~v 204 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRLGV 204 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhcCC
Confidence 3567789999999999999999999999998 48899999997531 23444322 3345678999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
..+|+++|++++.+....- .+|.-. .++|.+.+...+.+
T Consensus 205 ~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~t~ 243 (248)
T PRK13703 205 KYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVSTD 243 (248)
T ss_pred cccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence 9999999999986433321 333222 35676766655443
No 267
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.23 E-value=6.9e-06 Score=71.84 Aligned_cols=111 Identities=16% Similarity=0.316 Sum_probs=56.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHH-H--HHHHHHHHhcCCcEEEEEEeCCCCh-hHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQ-TSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
.+|+|+|.++++||.+|+.|... + .++++-+.+. +|.|.+|.+. ..+...+... ...
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~~~--------------~~~ 96 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYMNA--------------VQA 96 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHHHH--------------HHH
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHHHH--------------HHH
Confidence 38999999999999999998752 2 3344555544 6777777654 2222222211 112
Q ss_pred hcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh
Q 011791 340 KFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 399 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (477)
..|..|+|++++++|+|+.+.... +.-.. .......+.+++.++.++-+..+.+
T Consensus 97 ~~~~gGwPl~vfltPdg~p~~~~t-----Y~P~~-~~~g~~~f~~~l~~i~~~w~~~~~~ 150 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPDGKPFFGGT-----YFPPE-DRYGRPGFLQLLERIAELWKENREQ 150 (163)
T ss_dssp HHS---SSEEEEE-TTS-EEEEES-----S--SS--BTTB--HHHHHHHHHHHHHHSHHH
T ss_pred hcCCCCCCceEEECCCCCeeeeee-----ecCCC-CCCCCccHHHHHHHHHHHHHHCHHH
Confidence 237889999999999999988632 11111 0112234556666666554444333
No 268
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.22 E-value=6.6e-06 Score=69.45 Aligned_cols=93 Identities=11% Similarity=0.199 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH---HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+|+|+|++.||++|+.+-...- ++.+.+.+ . |.+|-+..|.... ... .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~--Fv~V~l~~d~td~------------~~~-----------~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-D--FIMLNLVHETTDK------------NLS-----------P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-C--eEEEEEEeccCCC------------CcC-----------c
Confidence 5799999999999999998876432 23333433 2 6544454442210 000 0
Q ss_pred cCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHH
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 227 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~ 227 (477)
.+ .++|+++++|++|+++.+-... ++...|-..+..+..+.+
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i~Gy----~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADITGR----YSNRLYTYEPADIPLLIE 117 (130)
T ss_pred cC-cccCeEEEECCCCCCccccccc----ccCccceeCcCcHHHHHH
Confidence 12 4689999999999988765322 333445555665555543
No 269
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.2e-06 Score=69.36 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCc-eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHHh
Q 011791 87 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRD 158 (477)
Q Consensus 87 p~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~~ 158 (477)
-|| +.+.+|+.+++++++||++||.=.|+-|+.-. ....|+.||++|+++| |+|+++.++. +.++..++
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHH
Confidence 345 34889999999999999999999999998765 5667899999999999 9999998862 34555555
Q ss_pred hcCCCCccccCC------chhHHHHHHHcC-----------cccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFK------DKSREKLARYFE-----------LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~------~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~~~~ 203 (477)
-...=-..+|.. ......|.+.+. |..-=+-+|||++|+++.+..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 542111222221 112223333321 111126789999999998874
No 270
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.18 E-value=6.2e-06 Score=65.34 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=55.0
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
.++++++.+..|+++||++|....+.+.++.+.+.+ +.+..+..|.. ..+++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHHH
Confidence 356778888999999999999998888888876532 66666766644 336789
Q ss_pred cCcccCCeEEEECCCCCcccc
Q 011791 181 FELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~ 201 (477)
|+|.++|++++ +|+.+..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 5776664
No 271
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.17 E-value=5.4e-06 Score=70.46 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh--
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK-- 340 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~-- 340 (477)
+..+..++.|..+|||.|+...|.|.++++..+ ++++-.+..|.+.+ +...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~e-----------------------l~~~~l 91 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKE-----------------------LMDQYL 91 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHH-----------------------HTTTTT
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChh-----------------------HHHHHH
Confidence 345678889999999999999999999988743 47777776664432 2221
Q ss_pred -cCCCCcceEEEECCCCcEEEecc
Q 011791 341 -FKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 341 -~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.|..++|+++++|.+|+.+.+.+
T Consensus 92 t~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 92 TNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp T-SS--SSEEEEE-TT--EEEEEE
T ss_pred hCCCeecCEEEEEcCCCCEeEEEc
Confidence 57889999999999999998865
No 272
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.15 E-value=1.1e-05 Score=67.13 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCCccchhhHHH-H--HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|+++|+|++.||++|..+... | .++.+.+++. +..+.+.+++.. ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e---------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE---------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc---------------------HHHHHHH
Confidence 57999999999999999987642 2 2344445443 444444433211 2457889
Q ss_pred cCcccCCeEEEECC-CCCccccc
Q 011791 181 FELSTLPTLVIIGP-DGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~-~G~i~~~~ 202 (477)
|++.++|+++++|+ +|+++.+.
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEEE
Confidence 99999999999999 89988764
No 273
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=74.43 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=100.9
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
-..+|+|+|+||.+|+..-|.+.++--.+++.|.++.|= .+|.+. -..++..|||++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVG--KlDaT~---------------------f~aiAnefgiqG 100 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVG--KLDATR---------------------FPAIANEFGIQG 100 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeec--cccccc---------------------chhhHhhhccCC
Confidence 478999999999999999999999988888888544431 223221 145889999999
Q ss_pred CCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHH------HHhhhhhhhhhhccCCCccee-ccCCCce
Q 011791 186 LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR------AKEESQTLESVLVSGDLDFVV-GKNGGKV 258 (477)
Q Consensus 186 ~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~p~f~l-~~~g~~~ 258 (477)
+||+.++..+-.+-++..+ +...+.+++.... ....++..+.+.....|.|++ .....++
T Consensus 101 YPTIk~~kgd~a~dYRG~R-------------~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL 167 (468)
T KOG4277|consen 101 YPTIKFFKGDHAIDYRGGR-------------EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPL 167 (468)
T ss_pred CceEEEecCCeeeecCCCc-------------cHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcH
Confidence 9999999765555454432 2222223222111 111122233344455577777 3222222
Q ss_pred e---cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHH-----HHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 259 P---VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-----IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 259 ~---l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
. ......|.++-+|++.. ....|..+.+... |++. ...|.-+.+.+.+.+++.+..|.++-
T Consensus 168 ~d~fidAASe~~~~a~FfSas----eeVaPe~~~~kempaV~VFKDe-----tf~i~de~dd~dLseWinRERf~~fL 236 (468)
T KOG4277|consen 168 FDAFIDAASEKFSVARFFSAS----EEVAPEENDAKEMPAVAVFKDE-----TFEIEDEGDDEDLSEWINRERFPGFL 236 (468)
T ss_pred HHHHHHHhhhheeeeeeeccc----cccCCcccchhhccceEEEccc-----eeEEEecCchhHHHHHHhHhhccchh
Confidence 1 11224578888888642 2334443332111 2211 23334444556777777777665543
No 274
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.13 E-value=9.1e-06 Score=66.72 Aligned_cols=72 Identities=38% Similarity=0.713 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-CChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
...+.++++++.||++||++|+.+.|.+.++.+++.. .+.++.++.. .. ..+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~-----------------------~~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDEN-----------------------PDLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCC-----------------------hHHH
Confidence 3334489999999999999999999999999999875 3677777775 22 2456
Q ss_pred HhcC--CCCcceEEEECCCCcE
Q 011791 339 RKFK--VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 339 ~~~~--v~~~Pt~~lid~~G~i 358 (477)
..|+ +..+|+++++ .+|..
T Consensus 81 ~~~~~~~~~~p~~~~~-~~~~~ 101 (127)
T COG0526 81 AEFGVAVRSIPTLLLF-KDGKE 101 (127)
T ss_pred HHHhhhhccCCeEEEE-eCcch
Confidence 6677 8888998866 34443
No 275
>PHA02125 thioredoxin-like protein
Probab=98.11 E-value=7.1e-06 Score=62.83 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.5
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+++|+++||++|+...|.|.++. ++++-|..|.. ..+++.|++.++|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 68999999999999999875431 33333333322 35788999999999
Q ss_pred EE
Q 011791 189 LV 190 (477)
Q Consensus 189 ~~ 190 (477)
++
T Consensus 50 ~~ 51 (75)
T PHA02125 50 LV 51 (75)
T ss_pred EE
Confidence 86
No 276
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.1e-05 Score=64.35 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=94.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|++ +.+...+++.++.||..+|..+ +---+.|......+++.+.++. +..|+.||+| -+-+.++|..
T Consensus 21 Gd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~RfC~ 95 (158)
T COG2077 21 GDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRFCG 95 (158)
T ss_pred CCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhhhh
Confidence 556799999 9999999999999987666555 6688999999999999888765 4789999999 5577889999
Q ss_pred cCCCceeccCcc-hhHHHHHhcCC--CCcc-------eEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKV--SGIP-------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v--~~~P-------t~~lid~~G~iv~~~~ 363 (477)
..+..+...++| ++..+.+.||+ ...| +.+++|.+|+|++...
T Consensus 96 aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 96 AEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 888776665555 56778899996 3444 6899999999998864
No 277
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9.5e-05 Score=62.92 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=60.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHH---HHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc----chhHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD----ARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~----d~~~~ 336 (477)
.+|+.++.|-++.|+.|.++...+.+ +.+-++.. +.++.+.+..... ..+-... -...+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~~E 106 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMSTEE 106 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecHHH
Confidence 48999999999999999998776633 33444443 6666666543321 1111111 12458
Q ss_pred HHHhcCCCCcceEEEECCCCcEEEe
Q 011791 337 LSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 337 l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|++.|+|+++||++++|++|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999998876
No 278
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.1e-05 Score=67.83 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=79.7
Q ss_pred CCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHH
Q 011791 86 SRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 157 (477)
Q Consensus 86 ~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~ 157 (477)
.-+|. .+.+|+.|+++.++||++||.=-|+-|+.-......|..|+++|+++| |+|++..++. +.++...
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHH
Confidence 44554 489999999999999999999999999988877789999999999999 9999998852 2334444
Q ss_pred hhcCCCCcccc------CCchhHHHHHHHcCcc-------cC---CeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALP------FKDKSREKLARYFELS-------TL---PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~------~~~~~~~~l~~~~~v~-------~~---P~~~lid~~G~i~~~~~ 203 (477)
++...+-..++ ...+....+.+.+.-. .| =+-+|+|++|.++.+..
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 44422111111 1112223333333211 12 25689999999998764
No 279
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.04 E-value=2.5e-05 Score=56.38 Aligned_cols=63 Identities=30% Similarity=0.657 Sum_probs=48.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.||++||++|+.+.+.+.++ +... .++.++.++++...... .....+++.++|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 4789999999999999999988 3322 36889999988654311 1135688999999
Q ss_pred EEEECCC
Q 011791 349 LVAIGPS 355 (477)
Q Consensus 349 ~~lid~~ 355 (477)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
No 280
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.03 E-value=1.1e-05 Score=74.91 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+..+.+++-|++|+.+.|+.|..+.|.|+.+.++| | +.|+.||+|...- ..+|.... +..+++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~ 177 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDGRPI-----------PSFPNPRP-DPGQAK 177 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCCCCC-----------cCCCCCCC-CHHHHH
Confidence 34456788899999999999999999999999998 5 9999999996431 12222222 345788
Q ss_pred HcCcccCCeEEEECCCCCcc
Q 011791 180 YFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~ 199 (477)
.|||..+|+++|+++++...
T Consensus 178 ~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 178 RLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HcCCCcCCEEEEEECCCCeE
Confidence 99999999999999987433
No 281
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.92 E-value=2.8e-05 Score=60.65 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=29.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D 149 (477)
+||+++|+|++.||++|+.+-..+ .++.+.+.++ |..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 479999999999999999887654 2334434433 555555554
No 282
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00012 Score=63.30 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=104.0
Q ss_pred hccCCCcceeccCCCceecccCCCCEEEEEEe--CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--h----
Q 011791 242 LVSGDLDFVVGKNGGKVPVSDLAGKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--T---- 313 (477)
Q Consensus 242 ~~~~~p~f~l~~~g~~~~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~---- 313 (477)
++...|+|..+..-..+.+.++.|.-+.|.|. |...|.|..++..+..++-+|..+ ++..+++|+|.-+ .
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHH
Confidence 34556999997777889999999988888888 568899999999999999999887 7999999999532 2
Q ss_pred HHHHHHhcCC-CceeccCcchhHHHHHhcCCC--------C----cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHH
Q 011791 314 SFDEFFKGMP-WLALPFGDARKASLSRKFKVS--------G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 380 (477)
Q Consensus 314 ~~~~~~~~~~-~~~~p~~~d~~~~l~~~~~v~--------~----~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~ 380 (477)
.++.|.+..+ -..+|+..|+..+++-.|+.- + .-.+++||++.++.-.. .|- ..+.+
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~------lYP----~ttGR 155 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF------LYP----STTGR 155 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE------Ecc----cccCc
Confidence 3334433222 367788889999999888752 3 34689999999987553 222 12356
Q ss_pred HHHHHHHHHHHHH
Q 011791 381 RMKEIDGQYNEMA 393 (477)
Q Consensus 381 ~~~~l~~~~~~~~ 393 (477)
++++++..++.+.
T Consensus 156 N~dEiLRvidsLq 168 (224)
T KOG0854|consen 156 NFDEILRVIDSLQ 168 (224)
T ss_pred CHHHHHHHHHHHh
Confidence 6788887777653
No 283
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.90 E-value=5.2e-05 Score=61.94 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=52.8
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
+.+.+|+.++++.++||++||.=.|+-|+.-. ....|++|+++|+++| ++|+++.++.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 34889999999999999999999999999777 7889999999999998 9999998863
No 284
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.4e-06 Score=73.48 Aligned_cols=125 Identities=16% Similarity=0.279 Sum_probs=79.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+++.++++||++||.+|.++...+..+.+.++ + ..++ +.+.+. ...++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~---~~~~--k~~a~~---------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-N---AQFL--KLEAEE---------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-h---heee--eehhhh---------------------hhHHHHHHHH
Confidence 68899999999999999999999999888873 2 4444 444333 2368999999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc-CCchhhh---------------cccccc
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK-GWPENVK---------------HALHEH 407 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---------------~~~~~~ 407 (477)
.+.|+++++ ..|+.+.+ ..|+++ +..-..++.+......-.. +...+++ ...+.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~-------l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~ 139 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDR-------LSGADP-PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAK 139 (227)
T ss_pred hcCceeeee-ecchhhhh-------hhccCc-HHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccC
Confidence 999999999 67776665 334333 1111111222111110011 1111111 123378
Q ss_pred ceeeccCCceeccCCCC
Q 011791 408 ELVLDRCGVYSCDGCDE 424 (477)
Q Consensus 408 ~~~l~~~~~~~~~~C~~ 424 (477)
+++|+|+|.+.-+.|+-
T Consensus 140 ~v~lFmKG~p~~P~CGF 156 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGF 156 (227)
T ss_pred eEEEEecCCCCcccccc
Confidence 99999999999999864
No 285
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.84 E-value=3.2e-05 Score=73.15 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+..+..++-+++|+...|+.|..+.|.|+.+.++| | ++|+.||+|...- ..+|.... +..+++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~ 207 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGTLI-----------PGLPNSRS-DSGQAQ 207 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCccC-ChHHHH
Confidence 34456788899999999999999999999999998 5 9999999996531 12222221 244688
Q ss_pred HcCcccCCeEEEECCCCCccc
Q 011791 180 YFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~~ 200 (477)
.+|+..+|+++|++++.+...
T Consensus 208 ~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 208 HLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hcCCccCceEEEEECCCCcEE
Confidence 999999999999999855433
No 286
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.84 E-value=8.2e-05 Score=53.58 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=48.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.||++||++|....+.+.++ .....+ +.++.++.+........ ...+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPALEKE--------------------LKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHHhhH--------------------HHhCCCccccE
Confidence 4789999999999999999988 333434 89999988866542221 35688899999
Q ss_pred EEEECCC
Q 011791 189 LVIIGPD 195 (477)
Q Consensus 189 ~~lid~~ 195 (477)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999865
No 287
>smart00594 UAS UAS domain.
Probab=97.83 E-value=9e-05 Score=62.52 Aligned_cols=69 Identities=17% Similarity=0.412 Sum_probs=49.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|.++|+|++.||++|..+.... .++.+.+.+ . +.++.+.+++.+ ...+++.
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCChh---------------------HHHHHHh
Confidence 579999999999999999876432 234444443 2 444444443322 2458899
Q ss_pred cCcccCCeEEEECCCC
Q 011791 181 FELSTLPTLVIIGPDG 196 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G 196 (477)
|++.++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999987
No 288
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=97.81 E-value=1.3e-05 Score=49.43 Aligned_cols=29 Identities=38% Similarity=0.900 Sum_probs=27.1
Q ss_pred eeccCCCCCCCeE-EEEcCCCCCCcccccc
Q 011791 417 YSCDGCDEEGRVW-AFSCDECDFCLHPNCA 445 (477)
Q Consensus 417 ~~~~~C~~~g~~w-~~~~~~~~~~~~~~~~ 445 (477)
++|+.|.+...+- .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4799999999988 9999999999999997
No 289
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.80 E-value=0.00028 Score=59.71 Aligned_cols=80 Identities=10% Similarity=0.171 Sum_probs=59.0
Q ss_pred CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCC
Q 011791 276 WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPS 355 (477)
Q Consensus 276 wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~ 355 (477)
-++-+....-.|.++.++|.+. ++.++.|++|.+. .++..|||.++||++|+ ++
T Consensus 47 r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~~-----------------------~LA~~fgV~siPTLl~F-kd 100 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSE-----------------------AIGDRFGVFRFPATLVF-TG 100 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCCH-----------------------HHHHHcCCccCCEEEEE-EC
Confidence 3455556677788888888632 3778888887654 69999999999999999 89
Q ss_pred CcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 356 GRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 356 G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
|+++.+. .|... .+++.+.|++++..
T Consensus 101 Gk~v~~i-------~G~~~-------k~~l~~~I~~~L~~ 126 (132)
T PRK11509 101 GNYRGVL-------NGIHP-------WAELINLMRGLVEP 126 (132)
T ss_pred CEEEEEE-------eCcCC-------HHHHHHHHHHHhcC
Confidence 9999873 33222 36677778777654
No 290
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.78 E-value=0.0001 Score=68.09 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred hhccCCCccee-ccCCCc-eecccCC--CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEe----CCC--
Q 011791 241 VLVSGDLDFVV-GKNGGK-VPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS----SDR-- 310 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~----~d~-- 310 (477)
.++..+||..+ +++|++ .++.++. ++|+||+|.+-.||+=+.-++.++++.++|.+. .++-+|.|. .|.
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCcc
Confidence 34667799988 999999 8999984 689999999999999999999999999999874 234444432 120
Q ss_pred ------------Ch-h--HHHHHHhcCCCceeccCcch-hHHHHHhcCCCCcce-EEEECCCCcEEEeccchh
Q 011791 311 ------------DQ-T--SFDEFFKGMPWLALPFGDAR-KASLSRKFKVSGIPM-LVAIGPSGRTITKEARDM 366 (477)
Q Consensus 311 ------------~~-~--~~~~~~~~~~~~~~p~~~d~-~~~l~~~~~v~~~Pt-~~lid~~G~iv~~~~~~~ 366 (477)
+. + ...+.+.+.. ...|+..|. +....+.|| ++|. +++| .+|+|++++|.++
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi-~~gkv~Y~Gg~GP 221 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYG--ALPERLYII-QDGKVVYKGGPGP 221 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhC--CCcceEEEE-ECCEEEEeCCCCC
Confidence 00 1 1222233222 456766553 556677777 4564 6666 6999999977554
No 291
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00029 Score=59.83 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=86.4
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEE-EecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLY-FSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~-F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+.+.++++++.||..+|. |-+-.-+.|-.....+++...++.+ ..|+.||.|-.- +.+.+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhh
Confidence 36899999955 88999999999999976555 5566789999999988888877754 689999999542 23333
Q ss_pred hcCCCCccc-cCCchhHHHHHHHcCc--ccCC-------eEEEECCCCCccccchhhHH
Q 011791 159 LGSMPWLAL-PFKDKSREKLARYFEL--STLP-------TLVIIGPDGKTLHSNVAEAI 207 (477)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~l~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~i 207 (477)
......-++ +..+-....+.+.||+ ...| +.+++|.+|++++..+..-|
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ei 152 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEI 152 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchh
Confidence 333221112 2222234557788886 3344 78899999999998875544
No 292
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.76 E-value=0.00016 Score=59.90 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+.+.+||.|+|+| |.|.. .|+..+|..++......+.|.-|.+|+.. ......|++.|+|
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~~~~~L~~~y~I 76 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EKLNMELGERYKL 76 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------chhhHHHHHHhCC
Confidence 3478999999944 33333 36666676666544323444445443211 1123569999999
Q ss_pred c--cCCeEEEECC
Q 011791 184 S--TLPTLVIIGP 194 (477)
Q Consensus 184 ~--~~P~~~lid~ 194 (477)
+ ++||+.++..
T Consensus 77 ~~~gyPTl~lF~~ 89 (116)
T cd03007 77 DKESYPVIYLFHG 89 (116)
T ss_pred CcCCCCEEEEEeC
Confidence 9 9999999974
No 293
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.75 E-value=0.00021 Score=53.80 Aligned_cols=56 Identities=20% Similarity=0.564 Sum_probs=41.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|+++||++|+...+.|.+ . ++.+..++++.+... ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999999887754 1 467777787765431 124567789999999
Q ss_pred EEEE
Q 011791 349 LVAI 352 (477)
Q Consensus 349 ~~li 352 (477)
+++.
T Consensus 54 ~~~~ 57 (74)
T TIGR02196 54 IVIG 57 (74)
T ss_pred EEEC
Confidence 9873
No 294
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.74 E-value=0.00018 Score=59.76 Aligned_cols=77 Identities=29% Similarity=0.656 Sum_probs=48.0
Q ss_pred CCEEEEEEeC-------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 265 GKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 265 gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|++++|+|++ +|||.|++..|.+++......+ +..+|.+.+. +...|+. ++...
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG-~r~~Wkd---------------p~n~f 79 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVG-DRPEWKD---------------PNNPF 79 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE----HHHHC----------------TTSHH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcC-CHHHhCC---------------CCCCc
Confidence 6788888885 5999999999999988777543 4777777775 3333321 11223
Q ss_pred HH--hcCCCCcceEEEECCCCcEEE
Q 011791 338 SR--KFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 338 ~~--~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.. .++++++||++-++..++++.
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEH
T ss_pred eEcceeeeeecceEEEECCCCccch
Confidence 33 589999999999976655443
No 295
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.73 E-value=5.3e-05 Score=71.24 Aligned_cols=82 Identities=13% Similarity=0.286 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+.++.+++-|++|+.+.|+.|..+.|.|+.+.++| | ++|+.||+|.... ..+|.... +...++
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g--~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~ 200 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---G--LSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQ 200 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCCcc-ChhHHH
Confidence 34456678899999999999999999999999998 5 9999999996431 22333221 233557
Q ss_pred HcCcccCCeEEEECCCCCc
Q 011791 180 YFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i 198 (477)
.+|+..+|+++|++++.+-
T Consensus 201 ~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 201 RLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcCCcccceEEEEECCCCc
Confidence 9999999999999988643
No 296
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.73 E-value=5.3e-05 Score=78.22 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=52.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHH-HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
++|+|+|+|||.||-.|+.+.+..- +.....+- .+ ++.+..|-+.+ ++...++.++||
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~--~vlLqaDvT~~-----------------~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QD--VVLLQADVTAN-----------------DPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CC--eEEEEeeecCC-----------------CHHHHHHHHHcC
Confidence 4569999999999999999887653 32222322 23 44444443221 122457788899
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
+-+.|++++++++|+-..
T Consensus 532 ~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred CCCCCEEEEECCCCCcCc
Confidence 999999999998987543
No 297
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.72 E-value=0.00015 Score=55.36 Aligned_cols=63 Identities=13% Similarity=0.360 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcCCCCcc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFKVSGIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~v~~~P 347 (477)
+..||++||++|+++.+.|.++ ++.+-.++++.+... ...+.. .+++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~---------~~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL---------GAAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5679999999999999888654 233445666654321 011112 25889999
Q ss_pred eEEEECCCCcEEEe
Q 011791 348 MLVAIGPSGRTITK 361 (477)
Q Consensus 348 t~~lid~~G~iv~~ 361 (477)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 96 46 46777654
No 298
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00014 Score=74.35 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=54.5
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
+.-+|.|+++||++|+.+.|.++++.+.+..-..=+.|..|.+.++ .+..+++.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~---------------------~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE---------------------ENVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch---------------------hhhhhHhhcCCCC
Confidence 4578899999999999999999999999887642244444444322 2467999999999
Q ss_pred CCeEEEECCC
Q 011791 186 LPTLVIIGPD 195 (477)
Q Consensus 186 ~P~~~lid~~ 195 (477)
+|++..+.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999876
No 299
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.70 E-value=0.00015 Score=59.34 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=39.9
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.....+++++++.||++||++|+...|.+.++.+.+... +.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECC
Confidence 334445899999999999999999999999999999862 677777775
No 300
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.63 E-value=0.00023 Score=67.24 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
...|+|.|+|.||+..+...|.+.+..++++++-.+-.+|+-.+|++.+ ..|+.+|.|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 3679999999999999999999999999888764335788888887765 4578999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||+-|+- +|.+..+.
T Consensus 72 KyPTlKvfr-nG~~~~rE 88 (375)
T KOG0912|consen 72 KYPTLKVFR-NGEMMKRE 88 (375)
T ss_pred cCceeeeee-ccchhhhh
Confidence 999999884 67766544
No 301
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00029 Score=61.11 Aligned_cols=120 Identities=19% Similarity=0.306 Sum_probs=91.4
Q ss_pred ccCcCCCceecCCCCeEecCCCCCCEEEEEEec--CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC--CHHHHHH
Q 011791 82 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSM--SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~~~~g~~v~ls~l~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~--~~~~~~~ 157 (477)
+|+.+|+|-.+..-.++.+.++.|....|.|+- ...|.|..++..+..+.-++.++| +..++.|+|+ +...|.+
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHHH
Confidence 688999998877767799999999888888874 467999999999999999999998 9999999995 3445655
Q ss_pred hhcC----CC-CccccCCchhHHHHHHHcCc--------cc----CCeEEEECCCCCccccch
Q 011791 158 DLGS----MP-WLALPFKDKSREKLARYFEL--------ST----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~----~~-~~~~~~~~~~~~~l~~~~~v--------~~----~P~~~lid~~G~i~~~~~ 203 (477)
-+++ .+ -+.+|...+..+.++-.|++ .+ .-.++++|++.++.-+..
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l 148 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL 148 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE
Confidence 4432 12 24455566667778877775 12 447889999998776553
No 302
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.56 E-value=0.00015 Score=56.47 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=44.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+...+.|.++. +.. .++++-|+.+.+..+++ ..+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999998865 221 26677666654433222 23566678999999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
++ + +|+.+
T Consensus 58 v~-i--~g~~i 65 (84)
T TIGR02180 58 IF-I--NGKFI 65 (84)
T ss_pred EE-E--CCEEE
Confidence 74 4 46544
No 303
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.55 E-value=0.0011 Score=55.16 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=49.3
Q ss_pred CCCEEEEEEeCC----CChhhHhHh--HHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 264 AGKTILLYFSAH----WCPPCRAFL--PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 264 ~gk~vll~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
.+|.++|+++++ ||..|+..+ |.+.+. +.. ++-+++.++.... ...+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~---~fv~w~~dv~~~e---------------------g~~l 68 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT---RMLFWACSVAKPE---------------------GYRV 68 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc---CEEEEEEecCChH---------------------HHHH
Confidence 489999999999 899998753 344333 333 3545555554332 2478
Q ss_pred HHhcCCCCcceEEEE---CCCCcEEEe
Q 011791 338 SRKFKVSGIPMLVAI---GPSGRTITK 361 (477)
Q Consensus 338 ~~~~~v~~~Pt~~li---d~~G~iv~~ 361 (477)
+..+++.++|+++++ +.+.+++.+
T Consensus 69 a~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 69 SQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 999999999999999 555556665
No 304
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.50 E-value=0.0001 Score=62.71 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=45.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
..+..++.|..+|||.|+..+|.|.++.+... + +++=.++.|++.+....+ + ..|.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~--i~~~~i~rd~~~el~~~~------------------l--t~g~ 95 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--N--IEVRIILRDENKELMDQY------------------L--TNGG 95 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--T--EEEEEE-HHHHHHHTTTT------------------T--T-SS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--C--CeEEEEEecCChhHHHHH------------------H--hCCC
Confidence 34667788999999999999999999999754 2 666667666544321111 1 1467
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|+++++|.+|+.+.+-+
T Consensus 96 ~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 96 RSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --SSEEEEE-TT--EEEEEE
T ss_pred eecCEEEEEcCCCCEeEEEc
Confidence 88999999999998876543
No 305
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.50 E-value=0.0023 Score=61.00 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC---CCC-h-------------hHHHHHHhcCCCc-
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DRD-Q-------------TSFDEFFKGMPWL- 325 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~---d~~-~-------------~~~~~~~~~~~~~- 325 (477)
.+|.+++.|.-+.||+|+++.+.+.++.+. .+++|..+.+ ..+ . ..+..+...+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 378899999999999999999888765442 1255544432 111 1 1122222211110
Q ss_pred -eecc--------CcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 326 -ALPF--------GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 326 -~~p~--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
..+. ..+.+..+.+.+||+|+|++++.|.+|++...
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 0110 11235568889999999999999999986443
No 306
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00023 Score=63.93 Aligned_cols=91 Identities=24% Similarity=0.477 Sum_probs=67.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC-
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 343 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v- 343 (477)
.++++|.|+|.|.+-|+...|.+.++..+|... .+.+-.|++..=+ +.+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfp-----------------------d~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFP-----------------------DVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCc-----------------------ChHHheeec
Confidence 468999999999999999999999999999754 4555555555433 35666776
Q ss_pred -----CCcceEEEECCCCcEEEeccchhhhhc-CCCCCCCCHHHHH
Q 011791 344 -----SGIPMLVAIGPSGRTITKEARDMIAVH-GAEAYPFTEERMK 383 (477)
Q Consensus 344 -----~~~Pt~~lid~~G~iv~~~~~~~~~~~-g~~~~~~~~~~~~ 383 (477)
+..||++++ .+|+-+.+ +-.+..- -+..+++++++.-
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVC 241 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHH
Confidence 478999999 78887776 3344444 3455788887653
No 307
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.21 E-value=0.00086 Score=52.07 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=41.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|+++||++|....+.|.++. +.. .++++-|+.+.+.+... ..+.+.+|+..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 36789999999999998887765 222 26777777664443332 33556778899999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 754
No 308
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.001 Score=54.11 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=48.9
Q ss_pred CCEEEEEEeC--------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 265 GKTILLYFSA--------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 265 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
|+.++++|++ +|||.|.+..|.+.+..+.... ++.+|-+.+..- +. ..++...
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~r-p~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNR-PY---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCC-Cc---------------ccCCCCc
Confidence 5557777775 6999999999999988886654 477777766532 11 1222233
Q ss_pred HHHhcCC-CCcceEEEECCC
Q 011791 337 LSRKFKV-SGIPMLVAIGPS 355 (477)
Q Consensus 337 l~~~~~v-~~~Pt~~lid~~ 355 (477)
+....++ .++||++=++..
T Consensus 86 FR~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred cccCCCceeecceeeEEcCc
Confidence 4455565 899999999743
No 309
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.17 E-value=0.0017 Score=54.04 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCEEEEEEec-------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+|+.++|+|.+ +|||.|+...|.+.+.+....+. ..+|.|.+. ++..|+.- ...
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG-~r~~Wkdp---------------~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG-DRPEWKDP---------------NNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC-T---------------TSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC-CHHHhCCC---------------CCC
Confidence 35677777774 49999999999999988875442 666666664 33455421 112
Q ss_pred HHH--HcCcccCCeEEEECCCCCccc
Q 011791 177 LAR--YFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 177 l~~--~~~v~~~P~~~lid~~G~i~~ 200 (477)
... .++|.++||++-.+..+++..
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 222 589999999999986655443
No 310
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.15 E-value=0.0034 Score=49.07 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc--CCCCc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF--KVSGI 346 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~--~v~~~ 346 (477)
+..|+.+||++|++....|+++..+++ ++.+..++++.+..+. .++.+.. ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~-------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISK-------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHH-------------------HHHHHHHCCCCCcC
Confidence 567899999999999999999876642 4677777777553211 1233333 45899
Q ss_pred ceEEEECCCCcEEE
Q 011791 347 PMLVAIGPSGRTIT 360 (477)
Q Consensus 347 Pt~~lid~~G~iv~ 360 (477)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9976 5 576653
No 311
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.08 E-value=0.0068 Score=46.33 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=41.4
Q ss_pred EeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEE
Q 011791 272 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 351 (477)
Q Consensus 272 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~l 351 (477)
+++++|+.|......++++.+.++ +++-.+... +. .++ ..|||.++|++ +
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~-~~----------------------~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIE-DF----------------------EEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETT-TH----------------------HHH-HHTT-SSSSEE-E
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEcc-CH----------------------HHH-HHcCCCCCCEE-E
Confidence 357779999999998888887774 334333442 32 245 88999999999 5
Q ss_pred ECCCCcEEEec
Q 011791 352 IGPSGRTITKE 362 (477)
Q Consensus 352 id~~G~iv~~~ 362 (477)
| ||+++..+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 6 58887763
No 312
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.07 E-value=0.0057 Score=57.64 Aligned_cols=88 Identities=22% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC----C---------------hhHHHHHHhcCCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR----D---------------QTSFDEFFKGMPW 324 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~----~---------------~~~~~~~~~~~~~ 324 (477)
.||.+++.|.-+.||+|+++.+.+.++.+ . +++|.++.... . ...+.+.+....-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 37889999999999999999988876532 2 36665543321 0 0122223322111
Q ss_pred c--eeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 325 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 325 ~--~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
. ......+.+..+++.+||+++|++++ ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 01112345678899999999999994 478765
No 313
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.07 E-value=0.0033 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=41.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+.+||++|++....|.+ . ++.+-.++++.+.+. ...+.+..|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~--~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K--GIPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T--TBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c--CCeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 467889999999999877743 2 466777777765421 234555559999999
Q ss_pred EEEECCCCcE
Q 011791 349 LVAIGPSGRT 358 (477)
Q Consensus 349 ~~lid~~G~i 358 (477)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 986 4554
No 314
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0038 Score=53.41 Aligned_cols=87 Identities=24% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCC--chhHHHH
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFK--DKSREKL 177 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 177 (477)
-++|+.++.|-...|+.|..+-..+ .++.+-+++. |.++-+....+... . +..... .....+|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv-~--------f~~g~kee~~s~~EL 107 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPV-L--------FKVGDKEEKMSTEEL 107 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcce-E--------eecCceeeeecHHHH
Confidence 3579999999999999998776544 3456666654 66776665433210 0 011111 0123589
Q ss_pred HHHcCcccCCeEEEECCCCCcccc
Q 011791 178 ARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
++.|+|+++|++++.|.+|+.+..
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEEe
Confidence 999999999999999999986654
No 315
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.00 E-value=0.0029 Score=47.37 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=39.2
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|+++||++|+...+.|.+ .+ +.+..+.++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 456999999999987776543 34 66777777655432 133567789999999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 876
No 316
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.90 E-value=0.0067 Score=55.68 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=54.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh----------------hHHHHHHhcCCCc-ee
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ----------------TSFDEFFKGMPWL-AL 327 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~----------------~~~~~~~~~~~~~-~~ 327 (477)
+++.++.|+.+.||+|+++.+.+.+ . ...-.+.++.+.+.... ..|.++.....-. ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~-~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----N-ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----c-cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 7899999999999999999998876 1 11123444444443211 1233333222110 11
Q ss_pred ---ccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 328 ---PFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 328 ---p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
....+.+..+++.+||+++|+++ + ++|+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 12234566889999999999998 5 467764
No 317
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.90 E-value=0.0038 Score=59.74 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=53.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+-.|||.||-+.++.|..+...|..|+.+|.. +.++-|...... +...|.+.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~------------------------~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP------------------------ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC------------------------TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC------------------------cccCCccc
Confidence 45899999999999999999999999999864 667777655321 46678999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
.+|++++| ++|.++...
T Consensus 198 ~LPtllvY-k~G~l~~~~ 214 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNF 214 (265)
T ss_dssp C-SEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEeE
Confidence 99999999 799988874
No 318
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.81 E-value=0.082 Score=56.16 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+..-+..|.+++||+|......+++++.. ++++..-.| |... ..++...|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEE--Echh---------------------CHhHHHhcC
Confidence 3345557789999999999888888777654 234555555 4322 236888999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|.++|++++ +|+.+..
T Consensus 167 v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 167 IMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CcccCEEEE---CCcEEEe
Confidence 999999976 3454433
No 319
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.79 E-value=0.0034 Score=55.09 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCEEEEEEecCCCccchhhHHH-H--HHHHHHHhcCCCcEEEEEEEcCCCH-HHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 105 GKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEE-ESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~g~~~~vv~is~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+|+|+|++.++||..|..+... + .++.+.+.+. +|.|-+|.++ .+...... ......
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~--------------~~~~~~ 97 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYM--------------NAVQAM 97 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHH--------------HHHHHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHH--------------HHHHHh
Confidence 5899999999999999866531 1 2344444433 4555555433 11211110 111123
Q ss_pred cCcccCCeEEEECCCCCccccc
Q 011791 181 FELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.|..+.|++++++++|+.+...
T Consensus 98 ~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HS---SSEEEEE-TTS-EEEEE
T ss_pred cCCCCCCceEEECCCCCeeeee
Confidence 3778999999999999987653
No 320
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.69 E-value=0.0028 Score=65.79 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH-HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV-EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
++|+|+|+|+|.||--|+.+-+..- +.....+-.+ ++.+-.|-+ -++....++.+.||
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT-----------------~~~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVT-----------------ANDPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeec-----------------CCCHHHHHHHHHcC
Confidence 3469999999999999998776432 3333333333 344444422 12233467889999
Q ss_pred cccCCeEEEECCCCCcc
Q 011791 183 LSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~ 199 (477)
+-+.|++++++++|+-.
T Consensus 532 ~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 532 VFGVPTYLFFGPQGSEP 548 (569)
T ss_pred CCCCCEEEEECCCCCcC
Confidence 99999999999988643
No 321
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.01 Score=54.06 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++.++++|||.||.+|......+..+.+..+. +.++.+..+. ...+++.+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~~-----------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAEE-----------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhhh-----------------------hhHHHHHHHH
Confidence 568899999999999999888777777776622 3433333221 2457788889
Q ss_pred ccCCeEEEE
Q 011791 184 STLPTLVII 192 (477)
Q Consensus 184 ~~~P~~~li 192 (477)
...|+++.+
T Consensus 69 ~~vp~~~~~ 77 (227)
T KOG0911|consen 69 EAVPYFVFF 77 (227)
T ss_pred hcCceeeee
Confidence 999998877
No 322
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.58 E-value=0.011 Score=44.72 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=37.7
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcCcccCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFELSTLP 187 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~P 187 (477)
+..||++||++|+...+.|.++ + +++-.+.++.+.... ..+.+ .++...+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~~-------------------~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGAA-------------------DRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhHH-------------------HHHHHHhCCCceeC
Confidence 4579999999999887766443 4 333346666443211 11212 25788999
Q ss_pred eEEEECCCCCcccc
Q 011791 188 TLVIIGPDGKTLHS 201 (477)
Q Consensus 188 ~~~lid~~G~i~~~ 201 (477)
+++ ++ +|+++..
T Consensus 54 ~i~-~~-~g~~l~~ 65 (77)
T TIGR02200 54 TVK-FA-DGSFLTN 65 (77)
T ss_pred EEE-EC-CCeEecC
Confidence 864 44 5665543
No 323
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.58 E-value=0.0068 Score=47.86 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=48.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-------hHHHHHH--hcCC-CceeccCcchhHHHH
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFF--KGMP-WLALPFGDARKASLS 338 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~-------~~~~~~~--~~~~-~~~~p~~~d~~~~l~ 338 (477)
+..|+.+.||+|..+.+.+.++...... ++.+....+.-.. ...+... .... ...+.... ....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHHH
Confidence 4678999999999999999988744433 4777766653211 1111110 0000 00000000 355678
Q ss_pred HhcCCCCcceEEEEC
Q 011791 339 RKFKVSGIPMLVAIG 353 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid 353 (477)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 889999999999986
No 324
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.57 E-value=0.026 Score=60.44 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=77.5
Q ss_pred cccccCCChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 011791 3 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYG-VEGYPFTVERIKEMKEQEERAKREQSLRSV 81 (477)
Q Consensus 3 w~~~p~~D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g-~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (477)
.+.+-+-|..+++++.++|+|...|++.+++.+|.- .| |+-+| |.++.|++--..
T Consensus 397 ~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~---~~---i~f~g~P~G~Ef~s~i~~------------------ 452 (555)
T TIGR03143 397 KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY---TG---LKFHGVPSGHELNSFILA------------------ 452 (555)
T ss_pred cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc---cc---eEEEecCccHhHHHHHHH------------------
Confidence 344555566667889999999999999999744431 11 11111 111222111000
Q ss_pred ccCcCCCceecCCCCeEe--------cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 82 LTSHSRDFVISSDGRKIS--------VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~~~~g~~v~--------ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+++..|.... +..+.++..+-.|..++|+.|......++++..... + ++.-.|.....
T Consensus 453 --------i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~--i~~~~i~~~~~-- 518 (555)
T TIGR03143 453 --------LYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--N--VEAEMIDVSHF-- 518 (555)
T ss_pred --------HHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--C--ceEEEEECccc--
Confidence 0011111111 123345555667889999999987777777666543 2 44444433322
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcccc
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
..+++.|+|.++|++++ ||+++..
T Consensus 519 ---------------------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ---------------------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ---------------------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 34788999999999877 4554443
No 325
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.57 E-value=0.0074 Score=50.26 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=46.2
Q ss_pred CCCEEEEEEecC----CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EGKTIGLYFSMS----SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
++|.++|+|+++ ||..|+..+.. .++.+.+.+ . +-+++.++...+ ..+++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~--fv~w~~dv~~~e---------------------g~~la~ 70 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-R--MLFWACSVAKPE---------------------GYRVSQ 70 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-C--EEEEEEecCChH---------------------HHHHHH
Confidence 579999999999 88999877632 233333433 2 555555554332 256889
Q ss_pred HcCcccCCeEEEECCC
Q 011791 180 YFELSTLPTLVIIGPD 195 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~ 195 (477)
.+++..+|+++++++.
T Consensus 71 ~l~~~~~P~~~~l~~~ 86 (116)
T cd02991 71 ALRERTYPFLAMIMLK 86 (116)
T ss_pred HhCCCCCCEEEEEEec
Confidence 9999999999999543
No 326
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.54 E-value=0.16 Score=53.84 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+..-+..|..+.||+|......++++... .+++..-.+ |... ..++...|+
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~i--d~~~---------------------~~~~~~~~~ 167 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMI--DGAL---------------------FQDEVEALG 167 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEE--Echh---------------------CHHHHHhcC
Confidence 3455567889999999999877777666554 234554443 3322 236889999
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
+.++|++++ +|+.+.
T Consensus 168 v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 168 IQGVPAVFL---NGEEFH 182 (515)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999986 344443
No 327
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.44 E-value=0.013 Score=45.12 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=41.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++|||+|....+.|.++.. .++++-++.+.+..+.+ ..+.+..|+.++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQ------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 467889999999999988877533 24566666654422211 23556678899999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++ +|+.+
T Consensus 57 v-~~--~g~~i 64 (82)
T cd03419 57 V-FI--GGKFI 64 (82)
T ss_pred E-EE--CCEEE
Confidence 7 45 46654
No 328
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.43 E-value=0.017 Score=43.04 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.4
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+.....|.+. ++.+..+++|.+... ...+.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 4678899999999988776542 355666677654321 112334447889999
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 875
No 329
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.24 E-value=0.029 Score=41.46 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|.++||++|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45688999999999998887542 44556666654421 124555567788997
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 753 566654
No 330
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.24 E-value=0.021 Score=54.48 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc---CC-------------CH-HHHHHhhcCCCCc
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---DD-------------EE-ESFKRDLGSMPWL 165 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~---D~-------------~~-~~~~~~~~~~~~~ 165 (477)
-.+|.+++.|.-+.||+|+.+.+.+.++.+. | +++|..+.+ .. ++ ..|..+.......
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3568889999999999999999887765442 2 144443322 11 11 1122222111100
Q ss_pred --cccC--C------chhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 166 --ALPF--K------DKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 166 --~~~~--~------~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
.-.. . ...+.++.+.+|++++|++++.|.+|.+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 0000 1 1223468889999999999999988874
No 331
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.21 E-value=0.13 Score=46.01 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=77.5
Q ss_pred HHHHHHcCcccCCeEEEECC-CCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceecc
Q 011791 175 EKLARYFELSTLPTLVIIGP-DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGK 253 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~-~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~ 253 (477)
..+++.+++.. |++++..+ +++.+.-... .++...+........ .|-+. ..
T Consensus 31 ~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-----------~~~~~~l~~fI~~~~---------------~P~v~-~~ 82 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-----------KFTPEELKKFIKKNS---------------FPLVP-EL 82 (184)
T ss_dssp HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-----------TTSHHHHHHHHHHHS---------------STSCE-EE
T ss_pred HHHHHHhCCCC-CcEEEeccCCCCceecccc-----------cCCHHHHHHHHHHhc---------------ccccc-cc
Confidence 44778899988 99999976 2332221110 124444444432221 12211 22
Q ss_pred CCCceecccCCCCE-EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcc
Q 011791 254 NGGKVPVSDLAGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 332 (477)
Q Consensus 254 ~g~~~~l~~~~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d 332 (477)
+...+..---.+++ +++.|...-..........+..++++++++ +.++.+..+...
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~-------------------- 139 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP-------------------- 139 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH--------------------
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH--------------------
Confidence 22222221123555 777777666677777888888888888765 667777666332
Q ss_pred hhHHHHHhcCCC--CcceEEEECCCCcE
Q 011791 333 RKASLSRKFKVS--GIPMLVAIGPSGRT 358 (477)
Q Consensus 333 ~~~~l~~~~~v~--~~Pt~~lid~~G~i 358 (477)
.+.+.||+. .+|++++++.....
T Consensus 140 ---~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 140 ---RLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ---HHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ---HHHHHcCCCCccCCEEEEEECCCCc
Confidence 467788998 89999999855543
No 332
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.15 E-value=0.064 Score=48.83 Aligned_cols=111 Identities=23% Similarity=0.468 Sum_probs=78.8
Q ss_pred CcceeccCCCceecccC-CCCEEEE-E-Ee-----CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 247 LDFVVGKNGGKVPVSDL-AGKTILL-Y-FS-----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~-~gk~vll-~-F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+++++....+++|+++ .|+-.|| + |- ..-|+.|..+...+.-....+..+ ++.++.|+-. ..+.+..|
T Consensus 47 ~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~af 123 (211)
T PF05988_consen 47 KDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEAF 123 (211)
T ss_pred CCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHHH
Confidence 55777444445888876 6764333 3 32 356999999999997777778776 5788888765 67899999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCC-----CCcceEEEECCCCcEEEe
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~iv~~ 361 (477)
.+.|+|. +|..+.....+...|++ ...|.+-+|-++|--|..
T Consensus 124 k~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 124 KRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred HHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 9999998 99887766677777887 456655444455544444
No 333
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.11 E-value=0.038 Score=50.68 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH----------------HHHHHhhcCCCC---
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE----------------ESFKRDLGSMPW--- 164 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~----------------~~~~~~~~~~~~--- 164 (477)
.++..++.|..+.||+|+.+.+.+.+ ...+..+.++.+.+.... +.|.+......-
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 47889999999999999999987766 222334555555554311 112222221110
Q ss_pred -ccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 165 -LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 165 -~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
-...........+++.+|++++|++++- +|+.+
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~~--~G~~~ 184 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIVLA--DGRVV 184 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEEEC--CCeEe
Confidence 0111122345678899999999999743 46653
No 334
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.026 Score=59.83 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=54.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+|||+|....+||.+|+.|...= .++++-+.+. +|-|.+|+++. |..+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 79999999999999999986432 2334444433 78889997641 22222223344433
Q ss_pred -CCCCcceEEEECCCCcEEEec
Q 011791 342 -KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 342 -~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|-.|.|-++|+.|||+.....
T Consensus 104 tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred ccCCCCceeEEECCCCceeeee
Confidence 345899999999999998753
No 335
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.99 E-value=0.018 Score=53.40 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=56.2
Q ss_pred hhccCcCCCc-eecCCCCe-EecCCCC--CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEE
Q 011791 80 SVLTSHSRDF-VISSDGRK-ISVSDLE--GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147 (477)
Q Consensus 80 ~~~g~~~p~f-l~~~~g~~-v~ls~l~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is 147 (477)
..+|.++||. +++.+|+. .++.|+. +++++|+|.+-.|||-+.-++.++++.++|.+. .+|-+|.|.
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~ 143 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIE 143 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHh
Confidence 4568999999 56889988 8998884 789999999999999999999999999999985 236666653
No 336
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.90 E-value=0.028 Score=43.25 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
+.-++.|+.+||++|++....|.+. ++.+..++++.+.. ...+.+..|...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~--------------------~~~~~~~~g~~~ 57 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDAR--------------------GRSLRAVTGATT 57 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChH--------------------HHHHHHHHCCCC
Confidence 3445678899999999998877532 34455566665432 123455678899
Q ss_pred cceEEEECCCCcEE
Q 011791 346 IPMLVAIGPSGRTI 359 (477)
Q Consensus 346 ~Pt~~lid~~G~iv 359 (477)
+|.++ + +|+.+
T Consensus 58 vP~i~-i--~g~~i 68 (79)
T TIGR02190 58 VPQVF-I--GGKLI 68 (79)
T ss_pred cCeEE-E--CCEEE
Confidence 99996 4 46654
No 337
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.86 E-value=0.1 Score=48.24 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=74.5
Q ss_pred eecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHH-HHHhcCCCceeccCc--ch
Q 011791 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFD-EFFKGMPWLALPFGD--AR 333 (477)
Q Consensus 258 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~p~~~--d~ 333 (477)
.......|+++||.+-..+|..|...+..|+.|..++... ..++.++.|+--.....+. ..+++.--..+|+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 4455667999999999999999999999999999999865 4578888887543333333 233333324577763 24
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
...+...++-.. =-++|+|+-|++.+.
T Consensus 99 q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 99 QPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 456777776543 368999999999887
No 338
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.85 E-value=0.055 Score=50.99 Aligned_cols=88 Identities=10% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC----C---------------HHHHHHhhcCCC-
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD----E---------------EESFKRDLGSMP- 163 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~----~---------------~~~~~~~~~~~~- 163 (477)
.||.+++.|..+.||+|+...+.|.++- +.| ++|.++...- + ...|.+.+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 5788999999999999999988876553 345 5665543221 1 111222222111
Q ss_pred -CccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 164 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 164 -~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
-...........++++.+||+++|++++- +|+.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 11111122345688999999999998864 56654
No 339
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.48 E-value=0.056 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|+.+||++|......| ++.| +.+-.+.++.+.+. ...+.+..|...+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 3568999999998766544 4445 55556666655321 234555558999999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 340
>PHA03050 glutaredoxin; Provisional
Probab=95.47 E-value=0.025 Score=46.45 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=39.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.++.-+. ..++++-|.-..+..++ ...+.+..|.+.+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~------------------~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENEL------------------RDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHH------------------HHHHHHHcCCCCcCE
Confidence 56788999999999988776542111 12444444321122222 234556668889999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ +|+ |+.+
T Consensus 73 I-fI~--g~~i 80 (108)
T PHA03050 73 I-FFG--KTSI 80 (108)
T ss_pred E-EEC--CEEE
Confidence 8 553 6655
No 341
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.47 E-value=0.16 Score=39.24 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=36.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|..+||++|.+....|.+ + ++.+-.++++.+.+.. ...+..|...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~--------------------~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAA--------------------ETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHH--------------------HHHHHcCCCCcCE
Confidence 456788999999998877743 2 4666667777554321 1223347789999
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 864
No 342
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.42 E-value=0.37 Score=41.85 Aligned_cols=123 Identities=10% Similarity=0.157 Sum_probs=74.1
Q ss_pred cCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHH-HHhcCCcEEEEE-EeCCCC--------hhHHHHHHhcC
Q 011791 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-IKERNESLEVVF-ISSDRD--------QTSFDEFFKGM 322 (477)
Q Consensus 253 ~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~iv~-i~~d~~--------~~~~~~~~~~~ 322 (477)
...+..+.+.+.||+-+|..-|---..=....|.+..+.+. |... ..+... |+.|+. ....++--+++
T Consensus 25 ~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~ 102 (160)
T PF09695_consen 25 ISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEF 102 (160)
T ss_pred ccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhC
Confidence 34456667788999988888776544444455555555443 4422 344333 355532 12333333455
Q ss_pred CCceeccCcchhHHHHHhcCCCC-cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 323 PWLALPFGDARKASLSRKFKVSG-IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~-~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
||..+-+ |.++.+.+.++... --.++++|++|+|+.... +.+++.++++.++-++
T Consensus 103 p~s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~-----------G~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 103 PWSQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKE-----------GALSPAEVQQVIALLK 158 (160)
T ss_pred CCcEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEEC-----------CCCCHHHHHHHHHHHh
Confidence 6655433 44455666666652 246889999999998743 4788888887776654
No 343
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.30 E-value=0.078 Score=40.39 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=38.4
Q ss_pred ecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEE
Q 011791 113 SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 192 (477)
Q Consensus 113 ~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~li 192 (477)
.+++|+.|......++++...+ |.+++++- . .+ ...+ ..||+.++|++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~--~-~~----------------------~~~~-~~ygv~~vPalvI- 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL---GIEVEIID--I-ED----------------------FEEI-EKYGVMSVPALVI- 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT---TEEEEEEE--T-TT----------------------HHHH-HHTT-SSSSEEEE-
T ss_pred eCCCCCCcHHHHHHHHHHHHhc---CCeEEEEE--c-cC----------------------HHHH-HHcCCCCCCEEEE-
Confidence 5677999998888888777776 32244433 2 11 1334 8999999999855
Q ss_pred CCCCCccccc
Q 011791 193 GPDGKTLHSN 202 (477)
Q Consensus 193 d~~G~i~~~~ 202 (477)
||+++..+
T Consensus 56 --ng~~~~~G 63 (76)
T PF13192_consen 56 --NGKVVFVG 63 (76)
T ss_dssp --TTEEEEES
T ss_pred --CCEEEEEe
Confidence 57776655
No 344
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.05 Score=49.30 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc-
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 183 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v- 183 (477)
.++.+|.|+|.|.+-|+.+.|.+.++..+|...+.+|-=|=|..= ...+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-------------------------pd~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-------------------------PDVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-------------------------cChHHheeec
Confidence 357899999999999999999999999999887643433222211 113445554
Q ss_pred -----ccCCeEEEECCCCCccccchhhHHhhcC-CCCCCCChhhHHH
Q 011791 184 -----STLPTLVIIGPDGKTLHSNVAEAIEEHG-VGAFPFTPEKFAE 224 (477)
Q Consensus 184 -----~~~P~~~lid~~G~i~~~~~~~~i~~~g-~~a~P~~~~~~~~ 224 (477)
+.+||++++. +|+-+.+. ..++..| ...|||+.+.+..
T Consensus 199 ~s~~srQLPT~ilFq-~gkE~~Rr--P~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQ-KGKEVSRR--PDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred cCcccccCCeEEEEc-cchhhhcC--ccccccCCcccccccHHHHHH
Confidence 6689999996 56544432 2334343 3458888776543
No 345
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.25 E-value=0.052 Score=41.57 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=37.7
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
..|+.+|||+|......|++. ++.+-.++++.+.+.. .++.+..|..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALR-------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 467889999999999888653 2334445555443221 234455678899997
Q ss_pred EEECCCCcEE
Q 011791 350 VAIGPSGRTI 359 (477)
Q Consensus 350 ~lid~~G~iv 359 (477)
++ +|+.+
T Consensus 54 -~i--~g~~i 60 (79)
T TIGR02181 54 -FI--GDVHV 60 (79)
T ss_pred -EE--CCEEE
Confidence 55 35544
No 346
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.22 E-value=0.072 Score=39.96 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=38.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|.+....|.+. ++.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 4668889999999998777642 34455556664431 123455568899999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++| |+.+
T Consensus 54 i-fi~--g~~i 61 (72)
T cd03029 54 V-FID--GELI 61 (72)
T ss_pred E-EEC--CEEE
Confidence 7 564 5554
No 347
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.22 E-value=0.081 Score=39.87 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC-Ccc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-GIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-~~P 347 (477)
+..|+.+||++|......|++. ++.+-.++++.+.+.. ..+.+..+.. ++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 4568889999999998877652 3455566666553321 2344455666 899
Q ss_pred eEEEECCCCcEE
Q 011791 348 MLVAIGPSGRTI 359 (477)
Q Consensus 348 t~~lid~~G~iv 359 (477)
.+ ++ +|+.+
T Consensus 54 ~v-~i--~g~~i 62 (75)
T cd03418 54 QI-FI--GDVHI 62 (75)
T ss_pred EE-EE--CCEEE
Confidence 76 45 35554
No 348
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.22 E-value=0.091 Score=41.23 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=46.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc--CCC----HHHHHHhhc---C--CCCccccCCchhHHHH
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DDE----EESFKRDLG---S--MPWLALPFKDKSREKL 177 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~--D~~----~~~~~~~~~---~--~~~~~~~~~~~~~~~l 177 (477)
+..|+...||.|....+.+.++.....+ + +.+..+.+ ... .......+. . ..|-..... ....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-G--VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL--ADTAL 75 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-c--EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH--HHHHH
Confidence 3578999999999999999888744333 2 66666554 322 111111100 0 000000000 34567
Q ss_pred HHHcCcccCCeEEEEC
Q 011791 178 ARYFELSTLPTLVIIG 193 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid 193 (477)
.+.+|+.++|++++-|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 8899999999998866
No 349
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.10 E-value=0.07 Score=40.94 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++|||+|......|.++.. +++++-|..+.+..... ..+.+..|...+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQ------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 366889999999987776655422 36777777665433222 33556778889999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 57 v~~ 59 (82)
T cd03419 57 VFI 59 (82)
T ss_pred EEE
Confidence 744
No 350
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.03 E-value=0.049 Score=42.66 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=27.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~ 311 (477)
++.|..+|||+|.+....|.++..++ .++.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~----~~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER----ADFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc----CCCcEEEEECCCC
Confidence 56788999999999998887764332 1345666666543
No 351
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=94.99 E-value=0.17 Score=46.16 Aligned_cols=110 Identities=19% Similarity=0.349 Sum_probs=70.9
Q ss_pred CceecCCCCeEecCCC-CCC--EEEEEEe-----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 88 DFVISSDGRKISVSDL-EGK--TIGLYFS-----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l-~gk--~vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
++.++....+++|+++ .|+ .++.+|. ...|+-|...+..+......+..++ +.++.||-. ..+....+-
T Consensus 48 ~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk 124 (211)
T PF05988_consen 48 DYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFK 124 (211)
T ss_pred CeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHH
Confidence 4666444445999986 666 4555554 4679999999999988888888887 777777765 455666666
Q ss_pred cCCCCccccCCchhHHHHHHHcCc-----ccCCeEEEECCC-CCcccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPD-GKTLHS 201 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~-G~i~~~ 201 (477)
+.|.|. +|......+.....|++ ...|.+-++-++ |+|.+.
T Consensus 125 ~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 125 RRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred HhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 667665 44433333334556666 456765555444 454443
No 352
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.90 E-value=0.11 Score=39.06 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|++....|.+. ++.+..++++.+.+. ..++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 3467789999999998877652 355666677654432 224555566678888
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+ ++ +|+.+.
T Consensus 55 v-~i--~~~~iG 63 (73)
T cd03027 55 I-FF--NEKLVG 63 (73)
T ss_pred E-EE--CCEEEe
Confidence 7 45 355543
No 353
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.86 E-value=0.11 Score=41.79 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=37.5
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.++ ++.+-.+++|.+.+. .+. ...+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~---------~i~~~~vdid~~~~~-~~~---------------~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL---------GVNPAVHEIDKEPAG-KDI---------------ENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCCEEEEcCCCccH-HHH---------------HHHHHHhcCCCCcCe
Confidence 4568889999999988766543 132334555543221 000 123455567889999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++ +|+.+
T Consensus 65 V-fi--~g~~i 72 (99)
T TIGR02189 65 V-FV--GGKLV 72 (99)
T ss_pred E-EE--CCEEE
Confidence 7 56 35554
No 354
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.84 E-value=0.2 Score=40.57 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.++++|+=.++.|+-+......+++.++...+. +.+.++.+-...+ -...+++.|||.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCCC
Confidence 688889888999999999999998888776543 7788887754331 145789999997
Q ss_pred -CcceEEEECCCCcEEEec
Q 011791 345 -GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 -~~Pt~~lid~~G~iv~~~ 362 (477)
.-|-+++| ++|++++..
T Consensus 77 HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp --SSEEEEE-ETTEEEEEE
T ss_pred cCCCcEEEE-ECCEEEEEC
Confidence 77999999 899999874
No 355
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.77 E-value=0.1 Score=39.23 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=34.8
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
..|..++|++|++....|.+. ++.+-.++++.+.+.. ..+. ..|..++|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 457789999999998888642 3556666776554311 1222 3478899997
Q ss_pred EE
Q 011791 350 VA 351 (477)
Q Consensus 350 ~l 351 (477)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 54
No 356
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.72 E-value=0.34 Score=46.07 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred Cccee-ccCCCceeccc-CCCCEEEEEEeC-CCChhhHhHhHHHH-HHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHh-
Q 011791 247 LDFVV-GKNGGKVPVSD-LAGKTILLYFSA-HWCPPCRAFLPKLI-DAYKKIKER-NESLEVVFISSDRDQTSFDEFFK- 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~-~~gk~vll~F~a-~wC~~C~~~~p~l~-~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~- 320 (477)
|++.- +++|+.+++.+ ++||+.||..+. .|-..|.. .+. ...++|... +..+++|-|++-.+. ++.++.
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~---sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~ 176 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD---SWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVK 176 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH---HHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHH
Confidence 77776 78888887755 589976665554 34333332 222 233444332 236899999886432 222222
Q ss_pred ----cC-------CCceeccCcch--hHHHHHhcCCC--CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 321 ----GM-------PWLALPFGDAR--KASLSRKFKVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 321 ----~~-------~~~~~p~~~d~--~~~l~~~~~v~--~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
.+ .|..+-+..+. ...+.+.+++. -+..++|+|++|+|++... +.-+++.++.|
T Consensus 177 ~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags-----------G~At~~E~~~L 245 (252)
T PF05176_consen 177 LFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS-----------GPATPEELESL 245 (252)
T ss_pred HHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc-----------CCCCHHHHHHH
Confidence 11 12222222222 44677778875 5678999999999999843 35578888888
Q ss_pred HHHHH
Q 011791 386 DGQYN 390 (477)
Q Consensus 386 ~~~~~ 390 (477)
.+.++
T Consensus 246 ~k~~~ 250 (252)
T PF05176_consen 246 WKCVK 250 (252)
T ss_pred HHHHh
Confidence 77664
No 357
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.66 E-value=0.09 Score=40.93 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=30.1
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
++.|+.+||++|......|.++..+++ + +.+..+.++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 567899999999999999988887653 3 56666776654
No 358
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.068 Score=43.77 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCEEEEEEec--------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 105 GKTIGLYFSM--------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 105 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
|+.+.++|.+ +|||.|.+..|.+.+..+.. ++++.+|-|-+- +++.|+. ....
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG-~rp~Wk~---------------p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVG-NRPYWKD---------------PANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEec-CCCcccC---------------CCCc
Confidence 4556666664 69999999999877776643 333666666554 2222321 1111
Q ss_pred HHHHcCc-ccCCeEEEECC
Q 011791 177 LARYFEL-STLPTLVIIGP 194 (477)
Q Consensus 177 l~~~~~v-~~~P~~~lid~ 194 (477)
....+++ .++||++=.+.
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 2234444 89999987764
No 359
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.53 E-value=0.066 Score=46.35 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
++++++.|+.++||+|+.+.|.+.++..+++ ++.+++..+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 6889999999999999999999988776653 355665544
No 360
>PRK10638 glutaredoxin 3; Provisional
Probab=94.48 E-value=0.2 Score=38.73 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=39.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|..+||++|++....|.+. ++.+..++++.+.+. ...+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999998877653 244445566644321 124555667889997
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+ ++ +|+.+.
T Consensus 56 i-~~--~g~~ig 64 (83)
T PRK10638 56 I-FI--DAQHIG 64 (83)
T ss_pred E-EE--CCEEEe
Confidence 7 44 466653
No 361
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.43 E-value=0.16 Score=40.10 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=40.1
Q ss_pred CCCEEEEEEeC----CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AGKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
++++|+|+--+ +||++|.+....|.+.. +.+..++++.+.+ . ...+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~-~------------------~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEE-V------------------RQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHH-H------------------HHHHHH
Confidence 35666665443 79999999887776542 3344445554432 1 234556
Q ss_pred hcCCCCcceEEEECCCCcEE
Q 011791 340 KFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv 359 (477)
..|...+|.+ ++ +|+.+
T Consensus 58 ~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 58 YSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred HhCCCCCCEE-EE--CCEEE
Confidence 6688899997 55 36654
No 362
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.39 E-value=0.16 Score=40.76 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCEEEEEEe----CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 265 GKTILLYFS----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 265 gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+.|+|+-. ++|||+|.+....|.++ ++.+..++++.+.+ . ...+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~-~------------------~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPE-I------------------RQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHH-H------------------HHHHHHH
Confidence 455666554 38999999998777653 23444556654432 1 1245555
Q ss_pred cCCCCcceEEEECCCCcEE
Q 011791 341 FKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv 359 (477)
.|...+|.++ || |+.+
T Consensus 63 tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 63 SNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred hCCCCCCEEE-EC--CEEE
Confidence 6778899885 53 6654
No 363
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=0.19 Score=45.74 Aligned_cols=93 Identities=22% Similarity=0.465 Sum_probs=68.1
Q ss_pred CcceeccCCCceecccC-CCCEEEEE---EeCC----CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 247 LDFVVGKNGGKVPVSDL-AGKTILLY---FSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~-~gk~vll~---F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+++++....+.+|++| .||-.||. +++| -|+.|..++..+.-....+... ++.++.|+-- ..+++..|
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRA-Pl~~l~~~ 129 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRA-PLEELVAY 129 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecC-cHHHHHHH
Confidence 56777555557788776 67754442 3344 5999999999997777777755 6888888754 67899999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCC
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+.|+|. ||..+.....+.+.|+|
T Consensus 130 k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 130 KRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHhcCCc-ceeEeccCccccccccc
Confidence 9999998 88877666666666755
No 364
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.34 E-value=0.088 Score=46.96 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+..-|++.||-+.-..|+-+-..|..+++++-+ ..+|-|+....+ -+..+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~P-----------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAP-----------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCc-----------------------eeeeeeee
Confidence 467899999999999999999999999888632 345555544332 47889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+.+|++.++ ++|+.+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 89988876
No 365
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.05 E-value=0.35 Score=41.07 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=44.4
Q ss_pred CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCC
Q 011791 117 YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 196 (477)
Q Consensus 117 C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 196 (477)
++-+....-.|.++.++|.+.. +.++-|.+|.+. .++..|||.++||++++. +|
T Consensus 48 ~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~-----------------------~LA~~fgV~siPTLl~Fk-dG 101 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE-----------------------AIGDRFGVFRFPATLVFT-GG 101 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH-----------------------HHHHHcCCccCCEEEEEE-CC
Confidence 3444455556778888885322 778888887664 489999999999999995 88
Q ss_pred Cccccc
Q 011791 197 KTLHSN 202 (477)
Q Consensus 197 ~i~~~~ 202 (477)
+.+.+.
T Consensus 102 k~v~~i 107 (132)
T PRK11509 102 NYRGVL 107 (132)
T ss_pred EEEEEE
Confidence 877655
No 366
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.05 E-value=0.22 Score=36.83 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=33.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++||++|......|.+ .+ +.+..+.+|.+.+.. ..+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~-------------------~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEAL-------------------EELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHH-------------------HHHHHHcCCcccCE
Confidence 466889999999976655443 34 455556666543211 22333446788998
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
No 367
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.98 E-value=0.21 Score=43.72 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
-.++++|+.|+...||+|..+.+.+.++.+++-+. +.+.+++..+-
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEcc
Confidence 34789999999999999999999999999998221 25888888773
No 368
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=93.94 E-value=0.034 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.6
Q ss_pred eccCCCCCCCeEEEEcCCC-CCCcccccccc
Q 011791 418 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 418 ~~~~C~~~g~~w~~~~~~~-~~~~~~~~~~~ 447 (477)
.|++|++...+-.|.|.+| +|||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 89999999863
No 369
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.43 Score=40.90 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCCEEEEEEe--CCCChhhHh-HhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc-eeccCcchhHHHH
Q 011791 263 LAGKTILLYFS--AHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL-ALPFGDARKASLS 338 (477)
Q Consensus 263 ~~gk~vll~F~--a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~ 338 (477)
++||.|+| |. +...|.|-. .+|-+.+++.++++++- -+|+-|+++ +.-...++.+..+.- ++.+..|.+.++.
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFT 111 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGV-DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFT 111 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCC-ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhh
Confidence 36776555 44 456788887 89999999999998732 257777887 445555566555443 6777777777777
Q ss_pred HhcC-----------CCCcceEEEECCCCcEEEec
Q 011791 339 RKFK-----------VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 339 ~~~~-----------v~~~Pt~~lid~~G~iv~~~ 362 (477)
+..| +++.-.-.++ .||.+....
T Consensus 112 k~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 112 KAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred hhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 7654 4555667788 789887653
No 370
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.73 E-value=0.65 Score=41.50 Aligned_cols=67 Identities=28% Similarity=0.539 Sum_probs=43.5
Q ss_pred CCE-EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 105 GKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 105 gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++. +++.|..............|..+.++++++ +.++.+..+.. ..+.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~-----------------------~~~~~~~~i 147 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF-----------------------PRLLKYFGI 147 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT-----------------------HHHHHHTTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh-----------------------HHHHHHcCC
Confidence 344 666676555555566666777777777654 55555554422 336678898
Q ss_pred c--cCCeEEEECCCCC
Q 011791 184 S--TLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~--~~P~~~lid~~G~ 197 (477)
. .+|++++++....
T Consensus 148 ~~~~~P~~vi~~~~~~ 163 (184)
T PF13848_consen 148 DEDDLPALVIFDSNKG 163 (184)
T ss_dssp TTSSSSEEEEEETTTS
T ss_pred CCccCCEEEEEECCCC
Confidence 7 8999999995543
No 371
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=0.52 Score=39.01 Aligned_cols=62 Identities=11% Similarity=0.321 Sum_probs=51.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.|.|+|-|.-.|-|.|..+-..|......+..- ..|..+.+|..+ .+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-----------------------~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-----------------------DFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-----------------------hhhhhhccc
Confidence 689999999999999999999999999988764 556666777443 578889999
Q ss_pred CcceEEEE
Q 011791 345 GIPMLVAI 352 (477)
Q Consensus 345 ~~Pt~~li 352 (477)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 99986655
No 372
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.88 E-value=0.2 Score=43.31 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEE
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~i 146 (477)
.++++++.|+..+||+|+.+.|.+.++..++.+ +.+++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEE
Confidence 468899999999999999999999888766532 555554
No 373
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.95 Score=43.60 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=56.2
Q ss_pred cCCCCEEEEEEeC----CCChhhHhHhHHHHHHHHHHHhcCC---cEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 262 DLAGKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNE---SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 262 ~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~---~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
.-++=.+++.|.| ..|.-|+.+..++.-+++.+....+ +-.+.+..+|-++ .
T Consensus 57 ~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---------------------~ 115 (331)
T KOG2603|consen 57 PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---------------------S 115 (331)
T ss_pred CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------c
Confidence 3345567888887 4699999999999999998875432 2345555555443 3
Q ss_pred HHHHHhcCCCCcceEEEECCC-CcEE
Q 011791 335 ASLSRKFKVSGIPMLVAIGPS-GRTI 359 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~~-G~iv 359 (477)
.++.+.++++..|+++++.|. |+..
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccc
Confidence 468999999999999999664 5555
No 374
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.72 E-value=0.43 Score=38.42 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++-|..+|||+|......|. +.|.++++ +.+|.+++.. .....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~-------~~~i~~~~--vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL-------TLGVNPAV--HEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCCEE--EEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 34588899999986555433 23433554 4454332211 11133555567888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 65 Vfi 67 (99)
T TIGR02189 65 VFV 67 (99)
T ss_pred EEE
Confidence 754
No 375
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.62 E-value=0.026 Score=51.79 Aligned_cols=69 Identities=22% Similarity=0.490 Sum_probs=49.2
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
-.+|.|+|+|||.|....|.|.+.+.--.+ -++.+-.|.+-.+. -+.-+|=|...
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~np-----------------------gLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNP-----------------------GLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEecc-----------------------ccceeeEEEec
Confidence 357899999999999999999876544322 24445444443222 35667888999
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
||++=+ +||.....
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999999 89987654
No 376
>PHA03050 glutaredoxin; Provisional
Probab=92.37 E-value=0.26 Score=40.36 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=37.1
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+|||+|......|.+. .-....++++-|.-..+... ....+.+.-|...+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence 4558999999998665544332 21111355555442112111 2245666678888999
Q ss_pred EEEECCCCCcc
Q 011791 189 LVIIGPDGKTL 199 (477)
Q Consensus 189 ~~lid~~G~i~ 199 (477)
+++ +|+.+
T Consensus 73 IfI---~g~~i 80 (108)
T PHA03050 73 IFF---GKTSI 80 (108)
T ss_pred EEE---CCEEE
Confidence 855 35544
No 377
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=92.11 E-value=0.51 Score=43.65 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=70.2
Q ss_pred eEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCC-cEEEEEEEcCCCHHHHH-Hhhc-CCCCccccCC--c
Q 011791 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE-SFEIVLISLDDEEESFK-RDLG-SMPWLALPFK--D 171 (477)
Q Consensus 97 ~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~-~~~vv~is~D~~~~~~~-~~~~-~~~~~~~~~~--~ 171 (477)
.....+..|++++|-+...+|..|...+..|..|..++...|. ++.++.|+--.....+. ..++ ..+ ..+|.. +
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~-~~ipVyqq~ 96 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVS-EHIPVYQQD 96 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCC-CCCceecCC
Confidence 4566778899999999999999999999999999999998873 56666676543332222 1222 222 223332 2
Q ss_pred hhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 172 KSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 172 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.....+...++-.. =-++|+|+-|++++.-
T Consensus 97 ~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 97 ENQPDVWELLNGSK-DDFLIYDRCGRLTYHI 126 (238)
T ss_pred ccccCHHHHhCCCc-CcEEEEeccCcEEEEe
Confidence 23344666666543 3568899999988764
No 378
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.82 Score=35.18 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.4
Q ss_pred EEEEeCCCChhhHhHhHHHH
Q 011791 269 LLYFSAHWCPPCRAFLPKLI 288 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~ 288 (477)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999999887776
No 379
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=91.86 E-value=0.1 Score=35.29 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=25.5
Q ss_pred eccCCCCCCC-eEEEEcCCC-CCCccccccc
Q 011791 418 SCDGCDEEGR-VWAFSCDEC-DFCLHPNCAL 446 (477)
Q Consensus 418 ~~~~C~~~g~-~w~~~~~~~-~~~~~~~~~~ 446 (477)
.|++|++... +-.|.|.+| ||||...|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 6999996554 899999999 8999999986
No 380
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.83 E-value=0.21 Score=44.53 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEe
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~ 307 (477)
.+++.|+.|+...||+|+.+.+.+.++.+++..+ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 4789999999999999999999999998887543 5555444
No 381
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.74 E-value=0.55 Score=41.01 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=39.2
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
.+-.-.++++++.|+...||+|..+.+.+.++.+++-+.| ++.+++..+-.
T Consensus 6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~ 56 (162)
T PF13462_consen 6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPL 56 (162)
T ss_dssp EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSS
T ss_pred eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccc
Confidence 3444566899999999999999999999999999984433 38888887643
No 382
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.86 Score=36.98 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=36.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+|.|.-+||++|.++...|.. +. ....|+-+.-+.+..++++.+ .+.-+-+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~---v~~~vvELD~~~~g~eiq~~l------------------~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG---VNPKVVELDEDEDGSEIQKAL------------------KKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC---CCCEEEEccCCCCcHHHHHHH------------------HHhcCCCCCCE
Confidence 356888999999996655544 32 234455444443333444333 33335568887
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+|+ +|+-+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 766 36666
No 383
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.31 E-value=1.5 Score=37.29 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=49.9
Q ss_pred hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC--CcceEEEECCCCcEE
Q 011791 282 AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS--GIPMLVAIGPSGRTI 359 (477)
Q Consensus 282 ~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~--~~Pt~~lid~~G~iv 359 (477)
.....|.+++++|+++ .+.+++++.+... .+.+.||+. ++|++++++.++. .
T Consensus 41 ~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~-----------------------~~~~~fgl~~~~~P~v~i~~~~~~-K 94 (130)
T cd02983 41 KYLEILKSVAEKFKKK--PWGWLWTEAGAQL-----------------------DLEEALNIGGFGYPAMVAINFRKM-K 94 (130)
T ss_pred HHHHHHHHHHHHhcCC--cEEEEEEeCcccH-----------------------HHHHHcCCCccCCCEEEEEecccC-c
Confidence 3577888888888765 3677777776443 478889985 5999999988764 3
Q ss_pred EeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 011791 360 TKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 396 (477)
Q Consensus 360 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 396 (477)
+.. + ..+++.+ .+.+.+++.+.+.
T Consensus 95 Y~~-------~---~~~~t~e---~i~~Fv~~~l~Gk 118 (130)
T cd02983 95 FAT-------L---KGSFSED---GINEFLRELSYGR 118 (130)
T ss_pred ccc-------c---cCccCHH---HHHHHHHHHHcCC
Confidence 321 0 0245554 4556666666653
No 384
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.25 E-value=0.67 Score=35.42 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=36.9
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
-++.|..+||++|......|. +.|.+++ .+.++.+.+. ..+.+..|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~--~idi~~~~~~--------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLK-------EKGYDFE--EIPLGNDARG--------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHH-------HcCCCcE--EEECCCChHH--------------------HHHHHHHCCCCcC
Confidence 355689999999997766553 3453344 4555544321 1234556788999
Q ss_pred eEEEECCCCCcc
Q 011791 188 TLVIIGPDGKTL 199 (477)
Q Consensus 188 ~~~lid~~G~i~ 199 (477)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9865 45543
No 385
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.98 E-value=0.57 Score=36.54 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=23.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
++.|..+|||+|......|.++..++. + +.+..+.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~ 39 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHA 39 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCC
Confidence 456889999999987766655543221 2 4455555553
No 386
>PRK10824 glutaredoxin-4; Provisional
Probab=90.81 E-value=0.43 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.5
Q ss_pred CCEEEEEEeC----CCChhhHhHhHHHHHH
Q 011791 265 GKTILLYFSA----HWCPPCRAFLPKLIDA 290 (477)
Q Consensus 265 gk~vll~F~a----~wC~~C~~~~p~l~~l 290 (477)
.++|+|+--. ||||+|++....|.++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 4555665443 6999999998877664
No 387
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1 Score=48.05 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+|+|+|-.-.+||..|..+...- .++.+-+++. +|.|-+|.++. |+.+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 48999999999999998765310 1333334332 56777776542 23222223344433
Q ss_pred -CcccCCeEEEECCCCCccc
Q 011791 182 -ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 182 -~v~~~P~~~lid~~G~i~~ 200 (477)
|-.+.|.++++-|||+...
T Consensus 104 tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred ccCCCCceeEEECCCCceee
Confidence 3467999999999998554
No 388
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=1 Score=33.61 Aligned_cols=73 Identities=18% Similarity=0.355 Sum_probs=46.9
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
+.|++..||.|..+...|..+. +..=+|.+-.+-..+++|++-.. +-| .-+-.+.+|--|||.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRD--s~~-----~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRD--SRP-----EFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhc--cch-----hHHhhhhcCcccceEE
Confidence 5689999999998877776542 22334455556678888887332 001 1123566788899987
Q ss_pred EEECCCCcEEE
Q 011791 350 VAIGPSGRTIT 360 (477)
Q Consensus 350 ~lid~~G~iv~ 360 (477)
.+= ||++|-
T Consensus 69 l~~--d~~vVl 77 (85)
T COG4545 69 LTD--DGKVVL 77 (85)
T ss_pred EeC--CCcEEE
Confidence 664 677764
No 389
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=89.90 E-value=2.1 Score=35.94 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.|.|+|-|...|=+.|.++-..|.+.+.+.+.- ..|..+.++.-+ .+.+.|.+.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-----------------------dfn~~yel~ 73 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-----------------------DFNQMYELY 73 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-----------------------CCHHHTTS-
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-----------------------hhhcccccC
Confidence 799999999999999999999999999988764 566677777544 466778888
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
.|.++++==+++-+..
T Consensus 74 -dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 74 -DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp -SSEEEEEEETTEEEEE
T ss_pred -CCeEEEEEecCeEEEE
Confidence 7753333123444444
No 390
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.84 E-value=1.2 Score=34.20 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
|+.|..+.|+-|......|.++.... .+++..|+++.+. .+..+|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~-----------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDP-----------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTH-----------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCH-----------------------HHHHHhcC-CCCE
Confidence 57788999999999988887643332 4788888888654 57889995 7999
Q ss_pred EEEEC
Q 011791 349 LVAIG 353 (477)
Q Consensus 349 ~~lid 353 (477)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66654
No 391
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.72 E-value=1.3 Score=34.18 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=33.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|..+||++|......| .++| +.+-.+.++.+++... .+ +..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~g--I~~~~idi~~~~~~~~-------------------~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRG--FDFEMINVDRVPEAAE-------------------TL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCC--CceEEEECCCCHHHHH-------------------HH-HHcCCCCcCE
Confidence 3568889999998765554 3456 4454556665543222 12 2347788999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 392
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=89.44 E-value=2.5 Score=41.47 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=60.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCCh--hhHhH---hHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCce
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCP--PCRAF---LPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~--~C~~~---~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 326 (477)
+++.+++.-.-.+-+.++|+|+.+--. ..++. ...+-+|+++.-++ .++.+..|++..+.
T Consensus 38 ~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~Kd~-------------- 102 (383)
T PF01216_consen 38 DLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKKDA-------------- 102 (383)
T ss_dssp EE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTTTH--------------
T ss_pred EcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHHHH--------------
Confidence 444444433222356788889886532 22221 12234555554432 37888888877664
Q ss_pred eccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 327 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 327 ~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+++++|+...++++++ ++|+++..+| ....+.|...|-.++.
T Consensus 103 ---------klAKKLgv~E~~SiyVf-kd~~~IEydG---------------~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 103 ---------KLAKKLGVEEEGSIYVF-KDGEVIEYDG---------------ERSADTLVEFLLDLLE 145 (383)
T ss_dssp ---------HHHHHHT--STTEEEEE-ETTEEEEE-S-----------------SHHHHHHHHHHHHS
T ss_pred ---------HHHHhcCccccCcEEEE-ECCcEEEecC---------------ccCHHHHHHHHHHhcc
Confidence 69999999999999999 8999998765 2223567777777765
No 393
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=89.16 E-value=3.4 Score=35.97 Aligned_cols=103 Identities=15% Similarity=0.276 Sum_probs=56.8
Q ss_pred CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHH-HhcCCCcEEEEE-EEcCCCH--------HHHHHhhcCCCCc
Q 011791 96 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEK-LKGKGESFEIVL-ISLDDEE--------ESFKRDLGSMPWL 165 (477)
Q Consensus 96 ~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~g~~~~vv~-is~D~~~--------~~~~~~~~~~~~~ 165 (477)
+..+...+.||+.+|...|-.-..=..-.|.+..+-+. +.. .+++... |+.|+.. ...++.-+++||-
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~--d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s 105 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH--DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWS 105 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc--cceeEEEEEecccccccchHHHHHHHHHhhhhCCCc
Confidence 45556678999988877664322211222333333222 332 3476666 4555421 1222333357887
Q ss_pred cccCCchhHHHHHHHcCccc-CCeEEEECCCCCccccc
Q 011791 166 ALPFKDKSREKLARYFELST-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 166 ~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~ 202 (477)
.+-.+.+ +.+.+.+++.. --.++++|++|+++...
T Consensus 106 ~~vlD~~--G~~~~aW~L~~~~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 106 QFVLDSN--GVVRKAWQLQEESSAIIVLDKQGKVQFVK 141 (160)
T ss_pred EEEEcCC--CceeccccCCCCCceEEEEcCCccEEEEE
Confidence 7644333 23566777743 35788999999998765
No 394
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.04 E-value=1.4 Score=32.81 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|..++|+.|+.....|. +.| +.+-.+.++.+.+.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~-------~~~--i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALE-------EHG--IAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCC--CceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 4577899999997766554 345 444455666554322 1222 3477889996
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
No 395
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=88.87 E-value=1.4 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=32.7
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+||+.|......|. +.| +.+..+.++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 35588899999987755544 335 4444455554331 122445567888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ifi 56 (72)
T cd03029 54 VFI 56 (72)
T ss_pred EEE
Confidence 743
No 396
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=88.73 E-value=0.35 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCceeccCCCCCC---CeEEEEcCCCCCCcccccccccC
Q 011791 414 CGVYSCDGCDEEG---RVWAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 414 ~~~~~~~~C~~~g---~~w~~~~~~~~~~~~~~~~~~~~ 449 (477)
..+..|+.|++.- ..-.|.|..|.+-+|.+|.....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 5677999999987 66799999999999999996543
No 397
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.72 E-value=2.6 Score=38.50 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=57.0
Q ss_pred CceecCCCCeEecCCC-CCCE--EEEEE-ec----CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 88 DFVISSDGRKISVSDL-EGKT--IGLYF-SM----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l-~gk~--vll~F-~a----~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+++.+...-+.+|++| .||- ++..| ++ ..|+.|...+.++......+...+ +.++.||-. ..+++..+-
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k 130 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYK 130 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHH
Confidence 5566554447899886 6664 33333 33 469999999999887777887776 788888765 445566665
Q ss_pred cCCCCccccCCchhHHHHHHHcCc
Q 011791 160 GSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+.|.|- +|......+.+.+.|++
T Consensus 131 ~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcCCc-ceeEeccCccccccccc
Confidence 666554 33332223334445544
No 398
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.52 E-value=8.5 Score=33.39 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=12.3
Q ss_pred CChhhHhHhHHHHHH
Q 011791 276 WCPPCRAFLPKLIDA 290 (477)
Q Consensus 276 wC~~C~~~~p~l~~l 290 (477)
+|++|++....|+.+
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 899999988777653
No 399
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.50 E-value=0.76 Score=33.56 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=34.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++||++|+.....|.+. + +.+..+.++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 3568899999999877665433 3 44555666554431 133455567778898
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ~~~ 56 (72)
T cd02066 54 IFI 56 (72)
T ss_pred EEE
Confidence 754
No 400
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.48 E-value=5.1 Score=33.32 Aligned_cols=90 Identities=20% Similarity=0.319 Sum_probs=50.6
Q ss_pred cccCCCCE-EEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 260 VSDLAGKT-ILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 260 l~~~~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|+++++|. +||.|. ..--+.=+.+...|.+....+.++ ++.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 45566653 333343 223344555666666666667766 56666663332211 0011112224467
Q ss_pred HHhcCCC-CcceEEEECCCCcEEEec
Q 011791 338 SRKFKVS-GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 338 ~~~~~v~-~~Pt~~lid~~G~iv~~~ 362 (477)
.+.|++. +.-+++||++||.+.-+.
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r~ 95 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLRW 95 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEec
Confidence 8888865 335799999999998774
No 401
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=88.19 E-value=1.1 Score=33.50 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc-cCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLP 187 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 187 (477)
+..|+.++|+.|......|.+ .| +.+-.+.++.+.+.. ..+.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 356888999999876665543 35 444455555543322 2244455655 789
Q ss_pred eEEE
Q 011791 188 TLVI 191 (477)
Q Consensus 188 ~~~l 191 (477)
.+++
T Consensus 54 ~v~i 57 (75)
T cd03418 54 QIFI 57 (75)
T ss_pred EEEE
Confidence 8654
No 402
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=87.95 E-value=0.79 Score=34.84 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=33.1
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|+.+||+.|......|.+ .|.++++ +.++.+.+.. ..+.+..|...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~--~di~~~~~~~-------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTE--IRVDGDPALR-------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEE--EEecCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 45889999999977665543 3533444 4455443321 234455677889997
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 54
No 403
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=87.40 E-value=1.7 Score=34.23 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCCEEEEEEe----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EGKTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+.+.|+|+-- .+||++|......|. +.|.+++.+ .++.+.+ ....+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~-------~~~i~y~~i--dv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILN-------QLGVDFGTF--DILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHH-------HcCCCeEEE--EcCCCHH-------------------HHHHHHH
Confidence 3455666432 269999986554443 334335544 4443322 1244566
Q ss_pred HcCcccCCeEEE
Q 011791 180 YFELSTLPTLVI 191 (477)
Q Consensus 180 ~~~v~~~P~~~l 191 (477)
..|...+|.+++
T Consensus 58 ~~g~~tvP~vfi 69 (90)
T cd03028 58 YSNWPTFPQLYV 69 (90)
T ss_pred HhCCCCCCEEEE
Confidence 667888999754
No 404
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.24 E-value=1.4 Score=32.94 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=33.1
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
+.|..+||+.|+.....|. +.| +.+..+.++.+.+.. ..+.+..+...+|.+
T Consensus 4 ~ly~~~~C~~C~ka~~~L~-------~~g--i~~~~~di~~~~~~~-------------------~el~~~~g~~~vP~v 55 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLR-------EKG--LPYVEINIDIFPERK-------------------AELEERTGSSVVPQI 55 (73)
T ss_pred EEEecCCChhHHHHHHHHH-------HCC--CceEEEECCCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 4577899999987665554 345 444555665544322 334555566778887
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 56 ~i 57 (73)
T cd03027 56 FF 57 (73)
T ss_pred EE
Confidence 55
No 405
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=87.08 E-value=0.9 Score=40.38 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEE
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~i 146 (477)
.+++.++.|+...||+|..+.+.+.++.+++.++ +.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEc
Confidence 5789999999999999999999999999888443 554443
No 406
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.95 E-value=3.4 Score=33.52 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=49.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.++++|+=.++.|+-.......+.+.++...+. +.+.++.+=..++ ....+++.|||.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCCC
Confidence 478888888999999988888888877776553 6677776543332 236789999996
Q ss_pred c-CCeEEEECCCCCccccc
Q 011791 185 T-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~-~P~~~lid~~G~i~~~~ 202 (477)
. -|.++|+. +|+++...
T Consensus 77 HeSPQ~ili~-~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILIK-NGKVVWHA 94 (105)
T ss_dssp --SSEEEEEE-TTEEEEEE
T ss_pred cCCCcEEEEE-CCEEEEEC
Confidence 5 79999996 78877654
No 407
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.78 E-value=1.1 Score=46.02 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=37.1
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.+. ++..-.+++|.+.. ..++.++.. ...+.+..|.+++|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 5678899999999988777653 34445566664432 222222111 001333467888998
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 855
No 408
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=86.29 E-value=1.2 Score=42.70 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++-+|+|+||-+.++.|..+...|..|+.+|.. +.++-|..... . +...|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~-----------------------~-~~~~f~~ 196 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC-----------------------P-ASENFPD 196 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC-----------------------C-TTTTS-T
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc-----------------------C-cccCCcc
Confidence 346899999999999999999999999999987 34555543311 0 2356778
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|++++.- +|.++...+
T Consensus 197 ~~LPtllvYk-~G~l~~~~V 215 (265)
T PF02114_consen 197 KNLPTLLVYK-NGDLIGNFV 215 (265)
T ss_dssp TC-SEEEEEE-TTEEEEEEC
T ss_pred cCCCEEEEEE-CCEEEEeEE
Confidence 9999998886 787776543
No 409
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=86.29 E-value=3.5 Score=39.25 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=65.1
Q ss_pred CcCCCcee-cCCCCeEecCC-CCCCEEEEEE-ecCCCccchh-hHHHHHHHHHHHh-cCCCcEEEEEEEcCCCHH-H-HH
Q 011791 84 SHSRDFVI-SSDGRKISVSD-LEGKTIGLYF-SMSSYKASAE-FTPRLVEVYEKLK-GKGESFEIVLISLDDEEE-S-FK 156 (477)
Q Consensus 84 ~~~p~fl~-~~~g~~v~ls~-l~gk~vll~F-~a~wC~~C~~-~~p~l~~l~~~~~-~~g~~~~vv~is~D~~~~-~-~~ 156 (477)
.-+|++.. +.+|+.+++.+ ++||+.+|.. +..|-..|.. ... ...+.|. ..+..+++|-|++-++.- . +.
T Consensus 99 lyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~---p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 99 LYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS---PFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh---HHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 34666643 67888888765 6899755543 3344333322 221 2222332 332359999999875532 1 12
Q ss_pred Hhhc-----CCC---Cccc--cCCchhHHHHHHHcCccc--CCeEEEECCCCCccccch
Q 011791 157 RDLG-----SMP---WLAL--PFKDKSREKLARYFELST--LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~-----~~~---~~~~--~~~~~~~~~l~~~~~v~~--~P~~~lid~~G~i~~~~~ 203 (477)
..+. .+| |-.+ .........+.+.+++.. +..++|+|.+|+|.....
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags 234 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS 234 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc
Confidence 2221 122 2222 111112345777888743 678999999999998764
No 410
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.01 E-value=0.77 Score=42.39 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKE 296 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~ 296 (477)
.|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 478889999999999999999866 666666654
No 411
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=3.7 Score=31.53 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.-++||+|......|. .+|..++.+-+..+.. +... ..+.+..|.+.+|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~-~~~~------------------~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEP-EEAR------------------EMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcH-HHHH------------------HHHHHhCCCCCcCE
Confidence 35577889999986655443 5564455555544432 1111 12233337888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 57 I~i 59 (80)
T COG0695 57 IFI 59 (80)
T ss_pred EEE
Confidence 766
No 412
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=2.1 Score=36.79 Aligned_cols=117 Identities=17% Similarity=0.319 Sum_probs=68.1
Q ss_pred hccCcCCCcee-------cCCC-CeEecCC-CCCCEEEEEEecC--CCccchh-hHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 81 VLTSHSRDFVI-------SSDG-RKISVSD-LEGKTIGLYFSMS--SYKASAE-FTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 81 ~~g~~~p~fl~-------~~~g-~~v~ls~-l~gk~vll~F~a~--wC~~C~~-~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.+|+.+|+-.+ +..| ..++..+ ++||.|+| |..+ ..|.|-. .+|-..+++++++.+|. =+|+.||+
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D~I~cVSV 81 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGV-DEIYCVSV 81 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCC-ceEEEEEe
Confidence 45677776533 1122 2334444 47887766 5544 4577876 78999999999999883 25677888
Q ss_pred CCC--HHHHHHhhcCC-CCccccCCchhHHHHHHHcCc-----------ccCCeEEEECCCCCccccch
Q 011791 149 DDE--EESFKRDLGSM-PWLALPFKDKSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 149 D~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 203 (477)
++. ..+|.+..... .-..+++. +.+..+.+|+ ++.-...++. ||.+..-++
T Consensus 82 ND~FVm~AWak~~g~~~~I~fi~Dg---~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~-nGvV~~~~i 146 (165)
T COG0678 82 NDAFVMNAWAKSQGGEGNIKFIPDG---NGEFTKAMGMLVDKSDLGFGVRSWRYSMVVE-NGVVEKLFI 146 (165)
T ss_pred CcHHHHHHHHHhcCCCccEEEecCC---CchhhhhcCceeecccCCcceeeeeEEEEEe-CCeEEEEEe
Confidence 753 35677766654 33333433 3445555543 3333444443 666655543
No 413
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=84.84 E-value=0.7 Score=31.62 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=29.4
Q ss_pred CceeccCCCCCCCe---EEEEcCCCCCCcccccccccC
Q 011791 415 GVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 415 ~~~~~~~C~~~g~~---w~~~~~~~~~~~~~~~~~~~~ 449 (477)
.+..|..|.+.-.+ ..|.|..|.+-+|++|.....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 46689999887664 899999999999999997653
No 414
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=84.60 E-value=2.7 Score=33.64 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=33.1
Q ss_pred CEEEEEEe----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+.|+|+-. ++|||+|......|. +.|.+++ .+.++.+.+ ....+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~-------~~~i~~~--~~di~~~~~-------------------~~~~l~~~t 63 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILK-------ACGVPFA--YVNVLEDPE-------------------IRQGIKEYS 63 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHH-------HcCCCEE--EEECCCCHH-------------------HHHHHHHHh
Confidence 44555543 389999986555443 3353344 445444432 123455566
Q ss_pred CcccCCeEEE
Q 011791 182 ELSTLPTLVI 191 (477)
Q Consensus 182 ~v~~~P~~~l 191 (477)
|...+|.+++
T Consensus 64 g~~tvP~vfi 73 (97)
T TIGR00365 64 NWPTIPQLYV 73 (97)
T ss_pred CCCCCCEEEE
Confidence 7788999765
No 415
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=84.22 E-value=5.9 Score=32.96 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.|.|+|-|.-.|-|-|..+-..|.++.+.+.+- .+|..+.+|+- ..+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhccc
Confidence 488999999999999999999999999998774 45555666633 2356788888
Q ss_pred cCCeEEEE
Q 011791 185 TLPTLVII 192 (477)
Q Consensus 185 ~~P~~~li 192 (477)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 88887755
No 416
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=84.02 E-value=0.29 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=12.1
Q ss_pred EEEcCCCCCCcccccccc
Q 011791 430 AFSCDECDFCLHPNCALG 447 (477)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~ 447 (477)
..+|..|++.+|..|-=.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 468999999999999844
No 417
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=83.74 E-value=10 Score=31.08 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=36.2
Q ss_pred hhhHhHhHHHHHHHHHHH-hcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC----cceEEEE
Q 011791 278 PPCRAFLPKLIDAYKKIK-ERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG----IPMLVAI 352 (477)
Q Consensus 278 ~~C~~~~p~l~~l~~~~~-~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~----~Pt~~li 352 (477)
..-......+.+++++++ ++ + .++.+|.+.. ....+.||+.. .|.+.++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gk---i--~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P~~~i~ 84 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRK---L--NFAVADKEDF---------------------SHELEEFGLDFSGGEKPVVAIR 84 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCe---E--EEEEEcHHHH---------------------HHHHHHcCCCcccCCCCEEEEE
Confidence 344557788888889988 55 4 4444554331 23677889974 9999999
Q ss_pred CCCC
Q 011791 353 GPSG 356 (477)
Q Consensus 353 d~~G 356 (477)
+.++
T Consensus 85 ~~~~ 88 (111)
T cd03073 85 TAKG 88 (111)
T ss_pred eCCC
Confidence 8665
No 418
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=82.56 E-value=0.83 Score=30.99 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.3
Q ss_pred eeccCCCCCCCeEEEEcCCCC-CCccccccccc
Q 011791 417 YSCDGCDEEGRVWAFSCDECD-FCLHPNCALGE 448 (477)
Q Consensus 417 ~~~~~C~~~g~~w~~~~~~~~-~~~~~~~~~~~ 448 (477)
+.|+.|...-.+-.|.|.+|. |||...|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 469999998888899999998 99999999754
No 419
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.90 E-value=9.5 Score=28.05 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=35.7
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEE
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLV 350 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~ 350 (477)
.|+.+||++|++..-.|.+. +-.++++.++..... ..+.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~----------------------~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELKNKP----------------------AEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCC----------------------HHHHHHCCCCCCCEEE
Confidence 46788999999987655442 224566665543221 1344444567888884
Q ss_pred EECCCCcEEEe
Q 011791 351 AIGPSGRTITK 361 (477)
Q Consensus 351 lid~~G~iv~~ 361 (477)
. .+|..+..
T Consensus 54 ~--~~g~~l~e 62 (71)
T cd03060 54 L--GNGTVIEE 62 (71)
T ss_pred E--CCCcEEec
Confidence 2 35766543
No 420
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=8 Score=31.38 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=35.9
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
|.|..+||+.|... +++...+ +.+..|+-+.-+.+-.+++ ..+.+.-|-+.+|.+
T Consensus 17 VifSKs~C~~c~~~----k~ll~~~---~v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~v 71 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRA----KELLSDL---GVNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPNV 71 (104)
T ss_pred EEEECCcCchHHHH----HHHHHhC---CCCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCEE
Confidence 45899999999872 3444443 3224554443333322233 334455556789997
Q ss_pred EEECCCCCcc
Q 011791 190 VIIGPDGKTL 199 (477)
Q Consensus 190 ~lid~~G~i~ 199 (477)
+| +|+.+
T Consensus 72 FI---~Gk~i 78 (104)
T KOG1752|consen 72 FI---GGKFI 78 (104)
T ss_pred EE---CCEEE
Confidence 77 56666
No 421
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.49 E-value=4.8 Score=42.75 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
+.++.-+..|..++||+|......++++..... ++..-.| |... ...+++.|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--Echh---------------------CHhHHHhcC
Confidence 344566788999999999988877777766432 2444344 3221 144788999
Q ss_pred cccCCeEEE
Q 011791 183 LSTLPTLVI 191 (477)
Q Consensus 183 v~~~P~~~l 191 (477)
+.++|++++
T Consensus 167 v~~VP~~~i 175 (517)
T PRK15317 167 IMAVPTVFL 175 (517)
T ss_pred CcccCEEEE
Confidence 999999876
No 422
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=80.04 E-value=15 Score=30.10 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=35.5
Q ss_pred hHhHhHHHHHHHHH---HHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC--cceEEEECC
Q 011791 280 CRAFLPKLIDAYKK---IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG--IPMLVAIGP 354 (477)
Q Consensus 280 C~~~~p~l~~l~~~---~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~--~Pt~~lid~ 354 (477)
-......+.+++++ ++++ +.++.++.+... ...+.||++. .|.+.+++-
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~-----------------------~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA---INFLTADGDKFR-----------------------HPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh-----------------------hHHHHcCCCHhHCCEEEEEcc
Confidence 35567788888888 7765 555544444221 3688899986 899999987
Q ss_pred CC
Q 011791 355 SG 356 (477)
Q Consensus 355 ~G 356 (477)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 55
No 423
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=80.00 E-value=12 Score=31.66 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc--cCCeEEEECCCC
Q 011791 123 FTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG 196 (477)
Q Consensus 123 ~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G 196 (477)
....|.++.++|++++ +.++++..+... .+.++||+. .+|++++++.++
T Consensus 42 ~~~~l~~vAk~~kgk~--i~Fv~vd~~~~~-----------------------~~~~~fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 42 YLEILKSVAEKFKKKP--WGWLWTEAGAQL-----------------------DLEEALNIGGFGYPAMVAINFRK 92 (130)
T ss_pred HHHHHHHHHHHhcCCc--EEEEEEeCcccH-----------------------HHHHHcCCCccCCCEEEEEeccc
Confidence 3567788888888765 677777665432 267889985 499999999875
No 424
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=79.97 E-value=0.96 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=20.9
Q ss_pred eccCCCCCCCeEEEEcCCCCCCc
Q 011791 418 SCDGCDEEGRVWAFSCDECDFCL 440 (477)
Q Consensus 418 ~~~~C~~~g~~w~~~~~~~~~~~ 440 (477)
.|+.|+.+-+.=+-.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48999999999999999999986
No 425
>PRK10638 glutaredoxin 3; Provisional
Probab=79.64 E-value=3.6 Score=31.60 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=35.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|..+||++|+.....|. +.|.+++ .+.+|.+.+. ...+.+..|...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~-------~~gi~y~--~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLN-------SKGVSFQ--EIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCCcE--EEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 34577899999987665544 3453344 4555544321 133455667888998
Q ss_pred EEEECCCCCcc
Q 011791 189 LVIIGPDGKTL 199 (477)
Q Consensus 189 ~~lid~~G~i~ 199 (477)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 754 45554
No 426
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=78.43 E-value=13 Score=31.30 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=35.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
.|+|+|-|.-.|-+.|...-..|.++.++.+.- ..|..|.+++-
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V 63 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV 63 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc
Confidence 589999999999999999999999999998775 55666766643
No 427
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=77.07 E-value=8.2 Score=33.47 Aligned_cols=103 Identities=17% Similarity=0.345 Sum_probs=61.4
Q ss_pred ceecccC-CCCEEEEE-EeCCCChh-hHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC-ceeccCcc
Q 011791 257 KVPVSDL-AGKTILLY-FSAHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW-LALPFGDA 332 (477)
Q Consensus 257 ~~~l~~~-~gk~vll~-F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~p~~~d 332 (477)
++.++++ +||-++|+ .=+...|. |+.-.|-+.+-+++++.++- -+|+-+++| ++-..+.+.+..+- ..+-+..|
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVn-DpFv~~aW~k~~g~~~~V~f~aD 111 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVN-DPFVMKAWAKSLGANDHVKFVAD 111 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecC-cHHHHHHHHhhcCccceEEEEec
Confidence 6777776 68655442 22345666 56689999999999998732 257778888 44444455544431 23444445
Q ss_pred hhHHHHHhcC-----------CCCcceEEEECCCCcEEEec
Q 011791 333 RKASLSRKFK-----------VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 333 ~~~~l~~~~~-----------v~~~Pt~~lid~~G~iv~~~ 362 (477)
...++.+.+| +++--.-.++ .||++...+
T Consensus 112 ~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 112 PAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred CCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 4444444443 3333445566 689887764
No 428
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=74.59 E-value=3.3 Score=33.76 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 335 ASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
..+...||+..+|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 479999999999999999 88988865
No 429
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=74.35 E-value=0.98 Score=41.74 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=41.0
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
.++.|.|+|||.|....|.|..++.--.+-+ +.|-.|.+-.+ || |.-.|=+..+|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n-----------pg------------LsGRF~vtaLp 96 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN-----------PG------------LSGRFLVTALP 96 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec-----------cc------------cceeeEEEecc
Confidence 4577999999999999998877665444444 44444333211 11 33456678889
Q ss_pred eEEEECCCCCc
Q 011791 188 TLVIIGPDGKT 198 (477)
Q Consensus 188 ~~~lid~~G~i 198 (477)
+++=+ .||..
T Consensus 97 tIYHv-kDGeF 106 (248)
T KOG0913|consen 97 TIYHV-KDGEF 106 (248)
T ss_pred eEEEe-ecccc
Confidence 88744 25543
No 430
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.82 E-value=7.1 Score=33.84 Aligned_cols=63 Identities=32% Similarity=0.537 Sum_probs=44.3
Q ss_pred eEecCCC-CCCEEEEEEecC--CCcc-chhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHHHHHhhcC
Q 011791 97 KISVSDL-EGKTIGLYFSMS--SYKA-SAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESFKRDLGS 161 (477)
Q Consensus 97 ~v~ls~l-~gk~vll~F~a~--wC~~-C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~~~~~~~~ 161 (477)
+++++++ +||-++| |-.+ ..|. |+...|-+.+-.++++.+|. =+|+.||+|+. ...|.+.+..
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVnDpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVNDPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecCcHHHHHHHHhhcCc
Confidence 7888886 7977666 4433 3456 56778999999999999883 25677888864 3556666553
No 431
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=73.17 E-value=2.6 Score=29.02 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=27.2
Q ss_pred eeccCCCCCCCe-EEEEcCCC-CCCcccccccc
Q 011791 417 YSCDGCDEEGRV-WAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 417 ~~~~~C~~~g~~-w~~~~~~~-~~~~~~~~~~~ 447 (477)
|.|+.|.+.... -.|.|.+| ||||=..|...
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 469999998877 88999999 99999999863
No 432
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=72.92 E-value=22 Score=32.59 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=62.0
Q ss_pred ccee-ccCCCceecc---cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 248 DFVV-GKNGGKVPVS---DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~---~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|++ -.+|+.+.-. +++.-.++|..|-+.-+.|..+...+.=|+.+|.. +.++-|.....
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~~------------ 201 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSNT------------ 201 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeeccc------------
Confidence 3455 4556655332 23345788899999999999999999888888753 55665554322
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
...++|..+++|++.++ ++|.+|.-.
T Consensus 202 ------------gas~~F~~n~lP~LliY-kgGeLIgNF 227 (273)
T KOG3171|consen 202 ------------GASDRFSLNVLPTLLIY-KGGELIGNF 227 (273)
T ss_pred ------------cchhhhcccCCceEEEe-eCCchhHHH
Confidence 35778899999999999 899988653
No 433
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.27 E-value=11 Score=40.14 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=41.7
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
+.++.-+..|..+.||+|......++++..... +++.-.| |... ...+++.|+
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~i--d~~~---------------------~~~~~~~~~ 167 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMI--DGAL---------------------FQDEVEALG 167 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEE--Echh---------------------CHHHHHhcC
Confidence 345666788999999999977776666655533 2443222 2211 144778999
Q ss_pred cccCCeEEE
Q 011791 183 LSTLPTLVI 191 (477)
Q Consensus 183 v~~~P~~~l 191 (477)
+.++|++++
T Consensus 168 v~~VP~~~i 176 (515)
T TIGR03140 168 IQGVPAVFL 176 (515)
T ss_pred CcccCEEEE
Confidence 999999876
No 434
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.48 E-value=7.3 Score=34.87 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=46.2
Q ss_pred ecCCCCeEecCCC--CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 91 ISSDGRKISVSDL--EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 91 ~~~~g~~v~ls~l--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
++..|+.|++.+| +.+.|+...--+.|--|+.+...|..+..-+...| +..|+|..
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEec
Confidence 5788999999998 45677777778899999999999999966677778 77777764
No 435
>PRK10824 glutaredoxin-4; Provisional
Probab=70.32 E-value=6.5 Score=32.55 Aligned_cols=63 Identities=30% Similarity=0.467 Sum_probs=35.1
Q ss_pred CEEEEEEec----CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFSM----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
..|+|+--. +|||+|......|.++ |.++.++ .++.+.+ . ...+.+.-
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~i--di~~d~~-~------------------~~~l~~~s 66 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYV--DILQNPD-I------------------RAELPKYA 66 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEE--EecCCHH-H------------------HHHHHHHh
Confidence 345554332 5999998766544432 3334443 4444432 1 23344555
Q ss_pred CcccCCeEEEECCCCCcc
Q 011791 182 ELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~ 199 (477)
|...+|.+++ +|+.+
T Consensus 67 g~~TVPQIFI---~G~~I 81 (115)
T PRK10824 67 NWPTFPQLWV---DGELV 81 (115)
T ss_pred CCCCCCeEEE---CCEEE
Confidence 7788999776 55555
No 436
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=69.73 E-value=8.2 Score=39.66 Aligned_cols=32 Identities=3% Similarity=0.012 Sum_probs=20.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEE
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is 147 (477)
++.|..+|||+|......| .+.|.+++++-|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L-------~~~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWF-------GANDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCCeEEEECC
Confidence 4568999999998655443 3446456654443
No 437
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=69.48 E-value=28 Score=30.05 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=68.4
Q ss_pred ceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHH--HHH-hcCCcEEEEEEeCCCC--------hhHHHHHHhcCCCc
Q 011791 257 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYK--KIK-ERNESLEVVFISSDRD--------QTSFDEFFKGMPWL 325 (477)
Q Consensus 257 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~--~~~-~~~~~~~iv~i~~d~~--------~~~~~~~~~~~~~~ 325 (477)
+..-+++.||.-+|.--|--... +.+...|.+..+ +|. +++.--.| |+.|+- ....+.-.+.+||.
T Consensus 51 ~W~SAqL~GKvRV~~hiAGRtsa-KE~Na~lieaIk~a~fp~~~YQTTTI--iN~DDAi~GtgmFVkssae~~Kke~pwS 127 (184)
T COG3054 51 TWNSAQLVGKVRVLQHIAGRTSA-KEKNATLIEAIKSAKFPHDRYQTTTI--INTDDAIPGTGMFVKSSAESNKKEYPWS 127 (184)
T ss_pred ccchhhccchhhhhhhhhcccch-hhhchHHHHHHHhccCChHHceeeEE--eccCCccccccceeecchhhccccCCce
Confidence 44556678988777655543322 233333333322 222 22322233 355532 22344455577777
Q ss_pred eeccCcchhHHHHHhcCCCCc-ceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 326 ALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~~~-Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.+-+.. .+.....++.+.- -..+++|++|++....- +.+++.++.+.+..+.+++
T Consensus 128 q~vlD~--~gvak~AWqL~e~~SaivVlDk~G~Vkfvke-----------GaLt~aevQ~Vi~ll~~l~ 183 (184)
T COG3054 128 QFVLDS--NGVAKNAWQLKEESSAVVVLDKDGRVKFVKE-----------GALTQAEVQQVIDLLQKLL 183 (184)
T ss_pred eeEEcc--chhhhhhhccccccceEEEEcCCCcEEEEec-----------CCccHHHHHHHHHHHHHhc
Confidence 665543 3333336777644 35788899999988743 3578888888888887765
No 438
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=68.71 E-value=21 Score=32.35 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
|-+|+|..|...-+.|.-+...|+.++-+|.+ +.+|-|-.. . ....|-=.
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at--~------------------------cIpNYPe~ 160 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPAT--T------------------------CIPNYPES 160 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccc--c------------------------ccCCCccc
Confidence 77999999999999999999999999999864 445544322 1 12234456
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
-.||++++ ..|.+..+. .++...-|.+ .+..+++.++-+..
T Consensus 161 nlPTl~VY-~~G~lk~q~-igll~lgG~n---~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 161 NLPTLLVY-HHGALKKQM-IGLLELGGMN---LTMEDVEDFLVQAG 201 (240)
T ss_pred CCCeEEEe-ecchHHhhe-ehhhhhcCCc---CCHHHHHHHHHhcc
Confidence 78999999 678877654 2333333333 35555555544443
No 439
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=67.99 E-value=46 Score=27.57 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=50.4
Q ss_pred cCCCCCCEEEEEEecCC--CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 011791 100 VSDLEGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 177 (477)
Q Consensus 100 ls~l~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (477)
++++++|.-+|..+|+. -+.-...+..|.+....+.++. +.++.+.-+..... .-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~~-----------~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARSP-----------GKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCccccc-----------cCcCCHHHHHHH
Confidence 45666665334444542 2333444555555555677776 66666643322110 012223344678
Q ss_pred HHHcCccc-CCeEEEECCCCCccccc
Q 011791 178 ARYFELST-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 178 ~~~~~v~~-~P~~~lid~~G~i~~~~ 202 (477)
.+.|++.. --+++||++||.+..+.
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r~ 95 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLRW 95 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEec
Confidence 88888743 35788999999887663
No 440
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=67.68 E-value=5.9 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGK 137 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~ 137 (477)
.|++.++.|+.-.||+|..+-+.+ ..+.+.+.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 578889999999999999998865 5666666543
No 441
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=67.28 E-value=8 Score=38.94 Aligned_cols=22 Identities=27% Similarity=0.810 Sum_probs=20.4
Q ss_pred ceeccCCCCCCCeEEEEcCCCC
Q 011791 416 VYSCDGCDEEGRVWAFSCDECD 437 (477)
Q Consensus 416 ~~~~~~C~~~g~~w~~~~~~~~ 437 (477)
.+.|++|+....-|.+.|+.|+
T Consensus 354 ~~~c~~cg~~~~~~~~~c~~c~ 375 (389)
T PRK11788 354 RYRCRNCGFTARTLYWHCPSCK 375 (389)
T ss_pred CEECCCCCCCCccceeECcCCC
Confidence 3789999999999999999996
No 442
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=67.19 E-value=13 Score=30.43 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 288 IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 288 ~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.+...++.+. ++.+|.|..... +..++|.+... ..+|+..|++..+.+.+|..
T Consensus 3 ~~~~~~l~~~--gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 3 SRRKPELEAA--GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred hHhHHHHHHc--CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCCc
Confidence 3445566554 688999998844 44888887765 46778888888999999887
No 443
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=65.58 E-value=28 Score=28.50 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHh-cCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc----CCeEEEECCCC
Q 011791 122 EFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST----LPTLVIIGPDG 196 (477)
Q Consensus 122 ~~~p~l~~l~~~~~-~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G 196 (477)
.....+.+++++++ ++ +.++.+|.+.. ..+.+.||+.. .|++++++.++
T Consensus 35 ~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P~~~i~~~~~ 88 (111)
T cd03073 35 YWRNRVLKVAKDFPDRK-----LNFAVADKEDF---------------------SHELEEFGLDFSGGEKPVVAIRTAKG 88 (111)
T ss_pred HHHHHHHHHHHHCcCCe-----EEEEEEcHHHH---------------------HHHHHHcCCCcccCCCCEEEEEeCCC
Confidence 44567777788887 33 44444443321 22568999964 89999998765
No 444
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=65.14 E-value=2 Score=28.99 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCceeccCCCCCCCeE--EEEcCCCCCCccccccccc
Q 011791 414 CGVYSCDGCDEEGRVW--AFSCDECDFCLHPNCALGE 448 (477)
Q Consensus 414 ~~~~~~~~C~~~g~~w--~~~~~~~~~~~~~~~~~~~ 448 (477)
..+..|..|++.-.+= .|.|..|.+-+|++|....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 3466799998854321 7999999999999998654
No 445
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=64.85 E-value=5.3 Score=32.58 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.2
Q ss_pred hhHHHhHhhhcccCCcceEEEEcCCCeE
Q 011791 11 SETRDKLDELFKVMGIPHLVILDENGKV 38 (477)
Q Consensus 11 ~~~~~~L~~~f~v~g~Ptl~~~~~~g~~ 38 (477)
.+.+..|..+|+|...|+|++|.. |..
T Consensus 68 ~~~e~~L~~r~gv~~~PaLvf~R~-g~~ 94 (107)
T PF07449_consen 68 RAAERALAARFGVRRWPALVFFRD-GRY 94 (107)
T ss_dssp HHHHHHHHHHHT-TSSSEEEEEET-TEE
T ss_pred chhHHHHHHHhCCccCCeEEEEEC-CEE
Confidence 567899999999999999999994 443
No 446
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=64.04 E-value=7.2 Score=26.09 Aligned_cols=33 Identities=30% Similarity=0.616 Sum_probs=28.2
Q ss_pred CceeccCCCCCCCeEEEEcCCC-CCCcccccccc
Q 011791 415 GVYSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 415 ~~~~~~~C~~~g~~w~~~~~~~-~~~~~~~~~~~ 447 (477)
..+.|+.|+..-.+-.|.|..| ||||=+.|...
T Consensus 3 ~~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 3467999998777788999999 99999999874
No 447
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=63.56 E-value=62 Score=32.84 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.9
Q ss_pred HHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 335 ASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
..++..|-+..+|..++|+..|+.+..
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEE
Confidence 457778889999999999999999887
No 448
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.61 E-value=21 Score=28.92 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHHHHhcCC
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFFKGMP 323 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~ 323 (477)
..|+.++|+.|++....|.+. ++.+-.+++.. +.++++.+++..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 457789999999988776542 23344444432 4556666665443
No 449
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=61.96 E-value=5.4 Score=32.71 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=21.5
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 310 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~ 310 (477)
.|..++|+.|++....|++. ++.+..+++..
T Consensus 3 iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVE 33 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc---------CCceEEecccC
Confidence 46789999999998777652 34555555543
No 450
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=60.65 E-value=22 Score=29.19 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.3
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC---hhHHHHHHhcC
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD---QTSFDEFFKGM 322 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~~~~~ 322 (477)
..|+.++|+.|++....|.+. ++.+.++++..+ .++++++++..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~---------gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH---------QIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEecCCCcchHHHHHHHHHHh
Confidence 356679999999988776552 355566666433 45566665543
No 451
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=22 Score=26.73 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=42.3
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhc---CCCCccccCCchhHHHHHHHcCcccC
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG---SMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
+.|.+..||.|..+...|.++.-. ++ +|.+-.+...+++++. ++|- - .-.+.+|--+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-------yd--~VeIt~Sm~NlKrFl~lRDs~~~---------F-d~vk~~gyiGI 65 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-------YD--FVEITESMANLKRFLHLRDSRPE---------F-DEVKSNGYIGI 65 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-------ce--eeehhhhhhhHHHHHhhhccchh---------H-HhhhhcCcccc
Confidence 558899999998877766554221 33 4444555666666655 2221 0 12356778889
Q ss_pred CeEEEECCCCCccc
Q 011791 187 PTLVIIGPDGKTLH 200 (477)
Q Consensus 187 P~~~lid~~G~i~~ 200 (477)
|.+.+- ||+++-
T Consensus 66 Pall~~--d~~vVl 77 (85)
T COG4545 66 PALLTD--DGKVVL 77 (85)
T ss_pred eEEEeC--CCcEEE
Confidence 987653 566553
No 452
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=59.74 E-value=6.2 Score=27.07 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=26.6
Q ss_pred eeccCCCC-CCCeEEEEcCCCC---CCcccccccc
Q 011791 417 YSCDGCDE-EGRVWAFSCDECD---FCLHPNCALG 447 (477)
Q Consensus 417 ~~~~~C~~-~g~~w~~~~~~~~---~~~~~~~~~~ 447 (477)
|.|+.|+. .-.+-.|.|..|. |||=..|...
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 46999998 7778899999998 9999999864
No 453
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=59.44 E-value=12 Score=30.04 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.2
Q ss_pred EEEeCCCChhhHhHhHHHHH
Q 011791 270 LYFSAHWCPPCRAFLPKLID 289 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~ 289 (477)
..|+.++|+.|++....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45778999999999877765
No 454
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=59.06 E-value=5.9 Score=28.26 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=8.3
Q ss_pred eEEEEcCCCCCC
Q 011791 428 VWAFSCDECDFC 439 (477)
Q Consensus 428 ~w~~~~~~~~~~ 439 (477)
+-.|.|++|+|.
T Consensus 46 ~~~Y~CP~CGF~ 57 (59)
T PRK14890 46 SNPYTCPKCGFE 57 (59)
T ss_pred CCceECCCCCCc
Confidence 346788888774
No 455
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=58.79 E-value=64 Score=27.02 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 123 FTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 123 ~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++-.+....+.++++| ++|.=.++..++..|.+. ..-..+.+.-|...+|.++| ||+++...
T Consensus 25 eL~~~a~~~~~Lk~~g--v~v~RyNL~~~P~aF~~n-------------~~V~~~L~~~G~e~LPitlV---dGeiv~~G 86 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQG--VEVERYNLAQNPQAFVEN-------------PEVNQLLQTEGAEALPITLV---DGEIVKTG 86 (123)
T ss_dssp HHHHHHHHHHHHHHTT---EEEEEETTT-TTHHHHS-------------HHHHHHHHHH-GGG-SEEEE---TTEEEEES
T ss_pred HHHHHHHHHHHHHhCC--ceEEEEccccCHHHHHhC-------------HHHHHHHHHcCcccCCEEEE---CCEEEEec
Confidence 3455566777888888 888888888877766532 12245666778999998776 78888765
No 456
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.73 E-value=24 Score=32.87 Aligned_cols=41 Identities=17% Similarity=0.022 Sum_probs=28.5
Q ss_pred EEEEE-EecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 107 TIGLY-FSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 107 ~vll~-F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.+-|+ |+-.-||.|-.--+.|.++...+...- +++|++-+.
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~w~pf 46 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIRWRPF 46 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce-eEEEEeccc
Confidence 34444 455689999988899988888887542 466666444
No 457
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=57.74 E-value=58 Score=27.59 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=19.5
Q ss_pred hhHHHHHhcCCCCcceEEEECCC
Q 011791 333 RKASLSRKFKVSGIPMLVAIGPS 355 (477)
Q Consensus 333 ~~~~l~~~~~v~~~Pt~~lid~~ 355 (477)
-+..+.++|+|+.+|++++...+
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCC
Confidence 35678999999999999999544
No 458
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=57.29 E-value=74 Score=24.62 Aligned_cols=30 Identities=3% Similarity=0.037 Sum_probs=20.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 297 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~ 297 (477)
.++++|-|+..++. .....+.++++.+++.
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~ 46 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD 46 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC
Confidence 56778888888876 4555666777776543
No 459
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=57.23 E-value=5.8 Score=27.17 Aligned_cols=30 Identities=47% Similarity=0.986 Sum_probs=25.9
Q ss_pred eccCCCCCCCeEEEEcCCC-CCCcccccccc
Q 011791 418 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 418 ~~~~C~~~g~~w~~~~~~~-~~~~~~~~~~~ 447 (477)
.||+|.....+-.|.|.+| ||||=..|...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999888899999998 78888888764
No 460
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=54.71 E-value=25 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~ 311 (477)
.|+.++|+.|++....|.+. ++.+..+++..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~ 34 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGED 34 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCC
Confidence 46789999999998777652 355666776543
No 461
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=54.32 E-value=39 Score=32.05 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=31.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.||+.+++..+-|||.|....=.|-.+..+|. ++.+..-..|
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG----n~~l~~~~S~ 98 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG----NFSLEYHYSD 98 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC----CeeeEEeecC
Confidence 48999999999999999998766666556664 3544444444
No 462
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=53.97 E-value=5.6 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.751 Sum_probs=22.5
Q ss_pred ceeccCCCCCC---CeEEEEcCCCCCCcccc
Q 011791 416 VYSCDGCDEEG---RVWAFSCDECDFCLHPN 443 (477)
Q Consensus 416 ~~~~~~C~~~g---~~w~~~~~~~~~~~~~~ 443 (477)
.|+|..|...- +.=+++|.+|+|++..+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RIlyK 50 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRILYK 50 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHHHHH
Confidence 48999998654 55789999999998644
No 463
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=52.87 E-value=28 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=28.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHHHHhcC
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFFKGM 322 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~~~ 322 (477)
+..|..++|+.|++....|.+. ++.+..+++.. +.+++.++++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---------gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---------DIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEeeccCChhhHHHHHHHHHHh
Confidence 3456789999999988666542 34455555543 345666666654
No 464
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=51.98 E-value=61 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHH---HhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc--CCeEEEECCC
Q 011791 121 AEFTPRLVEVYEK---LKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST--LPTLVIIGPD 195 (477)
Q Consensus 121 ~~~~p~l~~l~~~---~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~lid~~ 195 (477)
......+.++.++ ++++ +.+|.+|.+.. ....+.||+.. +|.+++++.+
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~~---------------------~~~~~~fgl~~~~~P~i~i~~~~ 83 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA-----INFLTADGDKF---------------------RHPLLHLGKTPADLPVIAIDSFR 83 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce-----EEEEEEechHh---------------------hhHHHHcCCCHhHCCEEEEEcch
Confidence 3455667777777 6654 44555553322 22678899976 8999999875
Q ss_pred C
Q 011791 196 G 196 (477)
Q Consensus 196 G 196 (477)
+
T Consensus 84 ~ 84 (111)
T cd03072 84 H 84 (111)
T ss_pred h
Confidence 5
No 465
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=51.26 E-value=39 Score=25.24 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=14.7
Q ss_pred EEEeCCCChhhHhHhHHHHH
Q 011791 270 LYFSAHWCPPCRAFLPKLID 289 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~ 289 (477)
..++.++|++|++..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 34566899999998766654
No 466
>PHA03075 glutaredoxin-like protein; Provisional
Probab=50.61 E-value=22 Score=29.18 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=25.0
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHH
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIK 295 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 295 (477)
|.++|-|.-|-|+.|......|.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999998888876666654
No 467
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=49.82 E-value=27 Score=31.17 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=26.2
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
+|.-|.|+.|-...|.+.++..+|+.+ +++-+|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEc
Confidence 588999999999999999999999875 66555543
No 469
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=35 Score=32.02 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=35.2
Q ss_pred cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcC
Q 011791 92 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 137 (477)
Q Consensus 92 ~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~ 137 (477)
..++..+..-+..++++++.|....||+|....|.|.+.+....+.
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 4555555565666689999999999999998889888866665544
No 470
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.73 E-value=7.9 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.599 Sum_probs=23.5
Q ss_pred ccCCCC-CCCeEEEEcCCCCCCcccccccccC
Q 011791 419 CDGCDE-EGRVWAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 419 ~~~C~~-~g~~w~~~~~~~~~~~~~~~~~~~~ 449 (477)
|.-|++ ......-.|..|+--.|..|.-...
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCCh
Confidence 444554 4566788999999999999996543
No 471
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=49.16 E-value=7 Score=37.84 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=58.3
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
-+|-+-||++|||..+...|.+.-.+..|.. ++... ++. +.. ...+...|++.+
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~--vee-------~~~-------------lpsv~s~~~~~~ 130 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFA--VEE-------SQA-------------LPSVFSSYGIHS 130 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc----ccccc--HHH-------Hhh-------------cccchhcccccc
Confidence 4677889999999999999988877766642 22222 221 111 124677899999
Q ss_pred cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 346 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 346 ~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.|+..+.+..-..+++. .+++..|+....+.+
T Consensus 131 ~ps~~~~n~t~~~~~~~----------------~r~l~sLv~fy~~i~ 162 (319)
T KOG2640|consen 131 EPSNLMLNQTCPASYRG----------------ERDLASLVNFYTEIT 162 (319)
T ss_pred CCcceeeccccchhhcc----------------cccHHHHHHHHHhhc
Confidence 99999998776666553 344566777666544
No 472
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.16 E-value=76 Score=30.99 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=51.8
Q ss_pred CCCEEEEEEecC----CCccchhhHHHHHHHHHHHhcCC---CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSMS----SYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~g---~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
++=.+++.|.|. .|.-|..+..+..-+.+.+...+ ..-.+.|.-+|-++ ..+
T Consensus 59 rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---------------------~p~ 117 (331)
T KOG2603|consen 59 RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---------------------SPQ 117 (331)
T ss_pred CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------cHH
Confidence 444578888875 59999999888888888776442 11345554444332 245
Q ss_pred HHHHcCcccCCeEEEECCC-CCcc
Q 011791 177 LARYFELSTLPTLVIIGPD-GKTL 199 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~-G~i~ 199 (477)
+.+.++++..|+++++.|. |+..
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccc
Confidence 7789999999999999764 5554
No 473
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=48.86 E-value=28 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
.|+.++|+.|++..-.|.+. +-.++++.++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecC
Confidence 46788999999876655543 22356666654
No 474
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.31 E-value=1.5e+02 Score=25.34 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=39.9
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC---
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS--- 344 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~--- 344 (477)
-++.|++|.|+=|..-...|+ .+ +|+|-.+..|.-. .+.+++||.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~--Gf~Vk~~~~~d~~-----------------------alK~~~gIp~e~ 74 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------AN--GFEVKVVETDDFL-----------------------ALKRRLGIPYEM 74 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hC--CcEEEEeecCcHH-----------------------HHHHhcCCChhh
Confidence 356788999999998776554 22 5777766666322 456667664
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
.-=++.+| +|+.+.-+
T Consensus 75 ~SCHT~VI--~Gy~vEGH 90 (149)
T COG3019 75 QSCHTAVI--NGYYVEGH 90 (149)
T ss_pred ccccEEEE--cCEEEecc
Confidence 22357778 58877643
No 475
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=48.22 E-value=80 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=18.4
Q ss_pred hHHHHHhcCCCCcceEEEECC
Q 011791 334 KASLSRKFKVSGIPMLVAIGP 354 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~ 354 (477)
+..+.++|+|+.+|++++...
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 457899999999999999954
No 476
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=47.93 E-value=37 Score=31.83 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=33.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHh
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE 296 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 296 (477)
..++..+......++++++.|.-..||+|+...|.+.+.+...+.
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 444555545455568999999999999999999988886666544
No 477
>PRK12559 transcriptional regulator Spx; Provisional
Probab=47.16 E-value=70 Score=27.05 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=28.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC---CChhHHHHHHhc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD---RDQTSFDEFFKG 321 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d---~~~~~~~~~~~~ 321 (477)
+..|..++|+.|++....|.+. ++.+-.+++. .+.++++.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~---------gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN---------QIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 3467789999999988666542 2334444443 356778888776
No 478
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=46.57 E-value=26 Score=37.88 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCchhhhccccccceeeccCCceeccCCCCC---CCeEEEEcCCCCCCcccccc
Q 011791 376 PFTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDEE---GRVWAFSCDECDFCLHPNCA 445 (477)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~C~~~---g~~w~~~~~~~~~~~~~~~~ 445 (477)
++....++.+++.++..... ....+...+--+........+||-|... -..=+-.|+.|.+-+|..|.
T Consensus 233 ~l~~~~~eRiieelE~~c~k--qi~~~l~~eeglgie~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy 303 (893)
T KOG0954|consen 233 ELDEGTFERIIEELERRCKK--QINHALETEEGLGIEYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY 303 (893)
T ss_pred ccchHHHHHHHHHHHHHHHH--HHHhhhhhcccceeeccccceeceecCCCccccceeEEeccchhHHHHhhh
Confidence 44555555555555443221 1111111122233334467799999875 24567789999999999998
No 479
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=46.57 E-value=33 Score=24.87 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.3
Q ss_pred EEeCCCChhhHhHhHHHHHH
Q 011791 271 YFSAHWCPPCRAFLPKLIDA 290 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l 290 (477)
.|+.++|++|++..-.|.+.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 46678999999988766543
No 480
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=46.25 E-value=13 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=24.5
Q ss_pred eccCCCC-CCCeEEEEcCCC-CCCcccccccccC
Q 011791 418 SCDGCDE-EGRVWAFSCDEC-DFCLHPNCALGED 449 (477)
Q Consensus 418 ~~~~C~~-~g~~w~~~~~~~-~~~~~~~~~~~~~ 449 (477)
.||+|+. .-.+-.|.|..| ||||=..|.....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~ 35 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG 35 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence 5899996 445678889976 7999999986543
No 481
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=46.11 E-value=1.2e+02 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=14.9
Q ss_pred EEEeCCCChhhHhHhHHHHH
Q 011791 270 LYFSAHWCPPCRAFLPKLID 289 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~ 289 (477)
..|..+.|+.|++..-.|.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 34667889999998866654
No 482
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=44.92 E-value=1.2e+02 Score=22.23 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=35.9
Q ss_pred EeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEE
Q 011791 272 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 351 (477)
Q Consensus 272 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~l 351 (477)
+..++|+.|++..=.+... + -.++++.++..... ..+.+...-..+|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~--i~~~~~~v~~~~~~----------------------~~~~~~~p~~~vPvL~- 51 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----G--IPYELVPVDPEEKR----------------------PEFLKLNPKGKVPVLV- 51 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----T--EEEEEEEEBTTSTS----------------------HHHHHHSTTSBSSEEE-
T ss_pred CCcCCChHHHHHHHHHHHc-----C--CeEEEeccCcccch----------------------hHHHhhcccccceEEE-
Confidence 5678999999977555432 1 13556555544221 2455555677899997
Q ss_pred ECCCCcEEEe
Q 011791 352 IGPSGRTITK 361 (477)
Q Consensus 352 id~~G~iv~~ 361 (477)
.| |.++..
T Consensus 52 ~~--g~~l~d 59 (75)
T PF13417_consen 52 DD--GEVLTD 59 (75)
T ss_dssp ET--TEEEES
T ss_pred EC--CEEEeC
Confidence 54 777664
No 483
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=44.19 E-value=47 Score=30.10 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=50.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+..-|+++|+-+.-..|+-+-.+|..+++.+-+. =||-++... .|| +...++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eT------rFikvnae~--------------~PF-------lv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVET------RFIKVNAEK--------------APF-------LVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcccc------eEEEEeccc--------------Cce-------eeeeeee
Confidence 3456999999999999999999999999887553 344443221 122 5678899
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
..+|+++++- +|..+..
T Consensus 136 kVLP~v~l~k-~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALFK-NGKTVDY 152 (211)
T ss_pred eEeeeEEEEE-cCEEEEE
Confidence 9999999885 6665443
No 484
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=43.48 E-value=48 Score=24.16 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=20.5
Q ss_pred EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 111 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 111 ~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.|...||+.|+...-. ++.+|.+++++-|...
T Consensus 3 ly~~~~~p~~~rv~~~-------L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 3 LYSFRRCPYAMRARMA-------LLLAGITVELREVELK 34 (71)
T ss_pred EEecCCCcHHHHHHHH-------HHHcCCCcEEEEeCCC
Confidence 4677899999764432 3344555887766553
No 485
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.96 E-value=38 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=42.0
Q ss_pred eccCCCceecccCC--CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 251 VGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 251 l~~~g~~~~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
++..|+.+++.+|. .+.|+...--+.|--|+.....|..+..-+.+. ++..|+|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~--Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDEL--GVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHh--CCEEEEEec
Confidence 57889999998883 345555556799999999999999985555554 566776653
No 486
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=42.95 E-value=91 Score=22.55 Aligned_cols=18 Identities=17% Similarity=0.120 Sum_probs=13.6
Q ss_pred EeCCCChhhHhHhHHHHH
Q 011791 272 FSAHWCPPCRAFLPKLID 289 (477)
Q Consensus 272 F~a~wC~~C~~~~p~l~~ 289 (477)
++.++|++|++..-.|..
T Consensus 4 y~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 4 YIYEHCPFCVKARMIAGL 21 (71)
T ss_pred EecCCCcHhHHHHHHHHH
Confidence 456789999987766654
No 487
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=42.80 E-value=50 Score=23.01 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=14.7
Q ss_pred EEeCCCChhhHhHhHHHHHH
Q 011791 271 YFSAHWCPPCRAFLPKLIDA 290 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l 290 (477)
.|+.++|+.|++..-.|...
T Consensus 3 ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc
Confidence 45678899999887666543
No 488
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.33 E-value=13 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=13.4
Q ss_pred ccCCCCCCCeEEEEcCCCCCCc
Q 011791 419 CDGCDEEGRVWAFSCDECDFCL 440 (477)
Q Consensus 419 ~~~C~~~g~~w~~~~~~~~~~~ 440 (477)
|+.|+.+-.-=+-.|+.|+.+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 5666666555555677666543
No 489
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=3.3e+02 Score=26.21 Aligned_cols=20 Identities=45% Similarity=1.011 Sum_probs=12.2
Q ss_pred CCceeccCCCCCCCeEEEEcCCC
Q 011791 414 CGVYSCDGCDEEGRVWAFSCDEC 436 (477)
Q Consensus 414 ~~~~~~~~C~~~g~~w~~~~~~~ 436 (477)
...--|..|.+.|.. .|+.|
T Consensus 260 ~~~~rC~~CNENGLv---rCp~C 279 (281)
T KOG2824|consen 260 GGVLRCLECNENGLV---RCPVC 279 (281)
T ss_pred CcEEECcccCCCCce---eCCcc
Confidence 344567777777764 45555
No 490
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=41.72 E-value=11 Score=26.89 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=8.7
Q ss_pred EEEEcCCCCCC
Q 011791 429 WAFSCDECDFC 439 (477)
Q Consensus 429 w~~~~~~~~~~ 439 (477)
--|.|++|+|.
T Consensus 49 ~~Y~Cp~CGF~ 59 (61)
T COG2888 49 NPYRCPKCGFE 59 (61)
T ss_pred CceECCCcCcc
Confidence 36889999884
No 491
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=41.52 E-value=54 Score=36.24 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=31.9
Q ss_pred cEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC-cceEEEECCCCcEEEe
Q 011791 300 SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG-IPMLVAIGPSGRTITK 361 (477)
Q Consensus 300 ~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~-~Pt~~lid~~G~iv~~ 361 (477)
+..||..|.-.+.+++....+. .|. .-.+..+++ .. .|...+||=.+.....
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g-~y~--------~~~L~~R~~-~a~~p~v~iiDmr~e~~~~ 401 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESG-KYK--------LLRLTNRAG-RARLPRVEIIDMRKEPLET 401 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcC-ceE--------EEEcccccc-ccCCCcceEEecccccccc
Confidence 4778888888777766655332 111 113456667 44 8888888765554433
No 492
>PRK11823 DNA repair protein RadA; Provisional
Probab=41.39 E-value=17 Score=37.91 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=21.9
Q ss_pred CCceeccCCCCCCCeEEEEcCCCC
Q 011791 414 CGVYSCDGCDEEGRVWAFSCDECD 437 (477)
Q Consensus 414 ~~~~~~~~C~~~g~~w~~~~~~~~ 437 (477)
+..|.|..|+-+..-|.-+|+.|.
T Consensus 5 ~~~y~C~~Cg~~~~~~~g~Cp~C~ 28 (446)
T PRK11823 5 KTAYVCQECGAESPKWLGRCPECG 28 (446)
T ss_pred CCeEECCcCCCCCcccCeeCcCCC
Confidence 456999999999999999999995
No 493
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=40.98 E-value=71 Score=27.03 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=28.7
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHHHHhcC
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFFKGM 322 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~~~ 322 (477)
..|..++|+.|++....|.+ + ++.+..+++.. +.++++.+++..
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~--~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNA-------H--QLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------c--CCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 35667999999998766654 2 34555555532 456777777654
No 494
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=40.74 E-value=24 Score=20.33 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=7.4
Q ss_pred eEEEEcCCCCC
Q 011791 428 VWAFSCDECDF 438 (477)
Q Consensus 428 ~w~~~~~~~~~ 438 (477)
+=.|.|+.|++
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 44677777764
No 495
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=40.60 E-value=55 Score=26.17 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=24.6
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-CHHHHHHhhc
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-EEESFKRDLG 160 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-~~~~~~~~~~ 160 (477)
..|..++|+.|+.....| ++.|.+++.+-|.-+. +.+.+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L-------~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 2 TIYGNPNCSTSRKALAWL-------EEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred EEEECCCCHHHHHHHHHH-------HHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 357789999998765443 4446445555554332 2344444433
No 496
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=40.43 E-value=18 Score=37.70 Aligned_cols=24 Identities=21% Similarity=0.760 Sum_probs=21.7
Q ss_pred CCceeccCCCCCCCeEEEEcCCCC
Q 011791 414 CGVYSCDGCDEEGRVWAFSCDECD 437 (477)
Q Consensus 414 ~~~~~~~~C~~~g~~w~~~~~~~~ 437 (477)
+..|.|..|+-+.+-|.-+|+.|.
T Consensus 5 ~~~y~C~~Cg~~~~~~~g~Cp~C~ 28 (454)
T TIGR00416 5 KSKFVCQHCGADSPKWQGKCPACH 28 (454)
T ss_pred CCeEECCcCCCCCccccEECcCCC
Confidence 346999999999999999999995
No 497
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=39.80 E-value=15 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=16.6
Q ss_pred eccCCCCCCCeEEEEcCCCCCCc
Q 011791 418 SCDGCDEEGRVWAFSCDECDFCL 440 (477)
Q Consensus 418 ~~~~C~~~g~~w~~~~~~~~~~~ 440 (477)
.|+.|+..-..=+-+|+.|+-.|
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCCcCCcccccChhhCCCC
Confidence 57788877667777788887654
No 498
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=39.58 E-value=18 Score=24.31 Aligned_cols=26 Identities=27% Similarity=0.847 Sum_probs=18.0
Q ss_pred ceeccCCCCCCCeE---EEEcCCCCCCcc
Q 011791 416 VYSCDGCDEEGRVW---AFSCDECDFCLH 441 (477)
Q Consensus 416 ~~~~~~C~~~g~~w---~~~~~~~~~~~~ 441 (477)
.|.|..|+..-... ...|++|++.+-
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceEE
Confidence 36788887754433 578888888764
No 499
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=39.20 E-value=14 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.696 Sum_probs=24.5
Q ss_pred eeccCCCCCCCeEEEEcCCC-CCCcccccccc
Q 011791 417 YSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 417 ~~~~~C~~~g~~w~~~~~~~-~~~~~~~~~~~ 447 (477)
|-|+.|...+ +=.|.|..| ||||=..|...
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCC
Confidence 4689998754 488999999 99998888754
No 500
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=38.40 E-value=7.5 Score=24.15 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=5.1
Q ss_pred EcCCCCCCc
Q 011791 432 SCDECDFCL 440 (477)
Q Consensus 432 ~~~~~~~~~ 440 (477)
.|++|++.+
T Consensus 19 rC~~CG~RI 27 (32)
T PF03604_consen 19 RCPECGHRI 27 (32)
T ss_dssp SBSSSS-SE
T ss_pred ECCcCCCeE
Confidence 566676665
Done!