Query 011792
Match_columns 477
No_of_seqs 135 out of 1208
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.5E-64 5.5E-69 498.6 44.3 441 1-471 1-449 (451)
2 PLN02555 limonoid glucosyltran 100.0 4.9E-64 1.1E-68 498.1 44.8 457 1-474 1-471 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 2.1E-63 4.5E-68 493.7 43.4 433 6-470 6-447 (448)
4 PLN02207 UDP-glycosyltransfera 100.0 9.2E-63 2E-67 486.8 43.3 441 6-472 3-465 (468)
5 PLN02173 UDP-glucosyl transfer 100.0 3E-62 6.4E-67 481.5 42.0 433 1-471 1-447 (449)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.1E-62 1.1E-66 485.5 43.0 447 6-474 9-473 (477)
7 PLN02210 UDP-glucosyl transfer 100.0 8.8E-62 1.9E-66 482.4 44.3 436 6-471 8-454 (456)
8 PLN02448 UDP-glycosyltransfera 100.0 1E-61 2.2E-66 485.4 42.3 437 5-473 9-458 (459)
9 PLN02992 coniferyl-alcohol glu 100.0 4.9E-61 1.1E-65 475.3 42.5 436 1-472 1-469 (481)
10 PLN02152 indole-3-acetate beta 100.0 5.3E-61 1.2E-65 473.3 42.4 435 6-470 3-454 (455)
11 PLN02554 UDP-glycosyltransfera 100.0 4.7E-61 1E-65 482.2 42.3 444 6-473 2-479 (481)
12 PLN00164 glucosyltransferase; 100.0 1.7E-60 3.6E-65 476.3 42.2 442 6-474 3-475 (480)
13 PLN02534 UDP-glycosyltransfera 100.0 3.4E-60 7.3E-65 471.3 43.4 450 6-475 8-489 (491)
14 PLN02670 transferase, transfer 100.0 1.4E-59 3.1E-64 464.6 40.8 449 1-473 1-466 (472)
15 PLN03007 UDP-glucosyltransfera 100.0 1.6E-59 3.5E-64 471.8 41.8 449 1-472 1-480 (482)
16 PLN03015 UDP-glucosyl transfer 100.0 4.6E-59 1E-63 458.5 43.3 439 6-470 3-466 (470)
17 PLN02167 UDP-glycosyltransfera 100.0 1.4E-59 3.1E-64 470.8 39.9 447 6-474 3-474 (475)
18 PLN03004 UDP-glycosyltransfera 100.0 1.6E-59 3.6E-64 462.3 38.0 431 6-461 3-450 (451)
19 PLN02764 glycosyltransferase f 100.0 2.1E-58 4.5E-63 452.6 42.2 429 1-476 1-449 (453)
20 PLN02208 glycosyltransferase f 100.0 2.1E-58 4.5E-63 455.3 39.9 418 1-472 1-439 (442)
21 PLN00414 glycosyltransferase f 100.0 2.5E-57 5.4E-62 448.1 39.7 420 1-474 1-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.4E-54 1.2E-58 432.3 26.4 412 7-472 21-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-53 2.4E-58 437.8 1.3 391 8-452 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-43 4.1E-48 350.9 27.4 381 12-471 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.2E-43 9.2E-48 350.0 20.8 380 7-469 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 7.7E-42 1.7E-46 335.2 20.7 386 6-473 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-41 3.7E-46 347.8 18.5 407 6-451 5-438 (496)
28 PRK12446 undecaprenyldiphospho 99.9 7.9E-24 1.7E-28 205.4 26.2 318 8-444 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 7.7E-24 1.7E-28 204.6 23.8 304 7-430 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 3E-21 6.6E-26 185.0 28.4 325 7-452 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 7.2E-22 1.6E-26 190.4 21.4 127 286-439 187-318 (321)
32 PRK00726 murG undecaprenyldiph 99.8 1.1E-17 2.4E-22 164.3 25.8 321 7-449 2-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.8E-16 8.2E-21 153.0 26.1 320 8-441 1-330 (350)
34 TIGR01133 murG undecaprenyldip 99.7 8.5E-15 1.8E-19 143.3 24.5 89 356-452 243-335 (348)
35 COG4671 Predicted glycosyl tra 99.7 1.5E-14 3.2E-19 132.3 21.2 337 6-432 9-364 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 1.1E-14 2.3E-19 143.6 20.7 348 7-467 6-383 (385)
37 PRK13609 diacylglycerol glucos 99.6 4E-13 8.8E-18 133.1 26.0 138 286-441 201-344 (380)
38 TIGR03590 PseG pseudaminic aci 99.6 1.2E-13 2.5E-18 129.9 20.1 104 287-403 170-278 (279)
39 PRK13608 diacylglycerol glucos 99.5 3.6E-12 7.8E-17 126.4 21.7 147 285-452 200-352 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.5 8.7E-12 1.9E-16 123.6 24.3 109 357-473 255-377 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 2.3E-15 5E-20 130.9 -1.8 135 289-433 1-144 (167)
42 PLN02605 monogalactosyldiacylg 99.4 4.9E-11 1.1E-15 118.1 23.5 96 347-452 265-362 (382)
43 PF03033 Glyco_transf_28: Glyc 99.3 1E-12 2.3E-17 110.4 4.9 122 9-144 1-134 (139)
44 TIGR03492 conserved hypothetic 99.3 6.8E-10 1.5E-14 109.7 24.8 335 14-443 4-372 (396)
45 cd03814 GT1_like_2 This family 99.2 1.6E-08 3.5E-13 99.0 29.9 137 287-444 196-341 (364)
46 cd03823 GT1_ExpE7_like This fa 99.2 1.1E-07 2.3E-12 92.9 31.8 80 346-433 242-329 (359)
47 PLN02871 UDP-sulfoquinovose:DA 99.2 1.4E-07 2.9E-12 96.1 33.3 130 288-439 263-404 (465)
48 cd03808 GT1_cap1E_like This fa 99.2 6.9E-08 1.5E-12 93.9 29.2 140 286-441 186-335 (359)
49 cd03794 GT1_wbuB_like This fam 99.1 5.7E-08 1.2E-12 95.7 27.1 138 286-443 218-373 (394)
50 COG3980 spsG Spore coat polysa 99.1 8.6E-09 1.9E-13 92.2 18.3 146 288-449 159-307 (318)
51 cd03818 GT1_ExpC_like This fam 99.1 6.4E-07 1.4E-11 89.3 33.3 80 346-433 280-366 (396)
52 cd04962 GT1_like_5 This family 99.1 2.5E-07 5.3E-12 91.3 29.7 80 346-433 252-336 (371)
53 cd03800 GT1_Sucrose_synthase T 99.1 5.1E-07 1.1E-11 89.8 31.1 80 346-433 282-368 (398)
54 cd03801 GT1_YqgM_like This fam 99.0 1.2E-06 2.7E-11 85.2 31.3 86 345-440 254-346 (374)
55 cd03817 GT1_UGDG_like This fam 99.0 1.1E-06 2.3E-11 86.2 30.9 79 346-433 258-343 (374)
56 PRK10307 putative glycosyl tra 99.0 2.5E-06 5.5E-11 85.5 33.4 81 347-433 284-373 (412)
57 PF04007 DUF354: Protein of un 99.0 5.8E-07 1.2E-11 85.8 25.5 303 7-432 1-309 (335)
58 PRK05749 3-deoxy-D-manno-octul 98.9 5.9E-07 1.3E-11 90.5 26.3 74 358-439 314-392 (425)
59 cd03816 GT1_ALG1_like This fam 98.9 2.6E-06 5.5E-11 85.4 29.8 77 347-433 294-381 (415)
60 cd03798 GT1_wlbH_like This fam 98.9 7.1E-06 1.5E-10 80.1 32.1 131 287-433 201-344 (377)
61 TIGR03449 mycothiol_MshA UDP-N 98.9 1.2E-05 2.6E-10 80.4 33.8 85 346-440 282-373 (405)
62 cd03821 GT1_Bme6_like This fam 98.9 3.8E-06 8.2E-11 82.2 29.5 78 346-433 261-345 (375)
63 cd03825 GT1_wcfI_like This fam 98.9 3.1E-06 6.6E-11 83.1 28.7 81 345-433 242-330 (365)
64 cd03820 GT1_amsD_like This fam 98.8 9.4E-06 2E-10 78.4 30.2 91 346-446 234-330 (348)
65 TIGR00236 wecB UDP-N-acetylglu 98.8 4E-07 8.7E-12 89.7 20.6 86 347-444 255-343 (365)
66 cd05844 GT1_like_7 Glycosyltra 98.8 6.7E-06 1.4E-10 80.9 28.1 80 346-433 244-336 (367)
67 cd03795 GT1_like_4 This family 98.8 4.7E-06 1E-10 81.5 26.7 130 287-433 190-332 (357)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 4.5E-07 9.8E-12 89.2 19.0 130 286-433 197-337 (363)
69 cd03805 GT1_ALG2_like This fam 98.8 1E-05 2.2E-10 80.4 28.6 79 346-433 279-364 (392)
70 TIGR02472 sucr_P_syn_N sucrose 98.8 1.2E-05 2.7E-10 81.1 29.1 82 346-433 316-406 (439)
71 cd03822 GT1_ecORF704_like This 98.8 1.6E-05 3.4E-10 77.8 29.3 79 346-433 246-334 (366)
72 cd03796 GT1_PIG-A_like This fa 98.8 1.5E-05 3.2E-10 79.6 29.2 78 346-433 249-333 (398)
73 cd03799 GT1_amsK_like This is 98.7 3.1E-05 6.8E-10 75.6 28.2 80 346-433 235-327 (355)
74 cd03802 GT1_AviGT4_like This f 98.7 9.3E-06 2E-10 78.7 24.1 126 290-433 173-308 (335)
75 PRK09922 UDP-D-galactose:(gluc 98.6 1.3E-05 2.8E-10 78.8 24.1 130 288-433 180-324 (359)
76 cd03819 GT1_WavL_like This fam 98.6 7.3E-05 1.6E-09 73.0 28.9 133 286-432 183-329 (355)
77 cd03807 GT1_WbnK_like This fam 98.6 6.6E-05 1.4E-09 73.1 27.7 78 346-433 250-332 (365)
78 cd04951 GT1_WbdM_like This fam 98.6 2.9E-05 6.4E-10 75.9 24.6 88 346-444 244-336 (360)
79 PRK14089 ipid-A-disaccharide s 98.6 3E-05 6.4E-10 74.8 23.0 145 287-449 167-332 (347)
80 cd03811 GT1_WabH_like This fam 98.5 4.7E-05 1E-09 73.5 24.9 80 346-433 245-332 (353)
81 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00059 1.3E-08 73.9 33.4 90 346-443 547-645 (1050)
82 TIGR02470 sucr_synth sucrose s 98.5 0.0013 2.9E-08 69.6 34.2 134 6-139 255-416 (784)
83 KOG3349 Predicted glycosyltran 98.4 1.2E-06 2.5E-11 70.8 8.5 127 288-430 4-144 (170)
84 cd03809 GT1_mtfB_like This fam 98.4 7.7E-05 1.7E-09 72.9 23.4 91 345-447 251-348 (365)
85 PLN02275 transferase, transfer 98.4 0.00041 8.8E-09 68.5 27.5 75 347-431 286-371 (371)
86 cd04955 GT1_like_6 This family 98.4 0.00024 5.2E-09 69.6 25.9 77 345-433 246-330 (363)
87 PLN00142 sucrose synthase 98.4 0.00046 1E-08 73.0 28.4 117 25-141 319-441 (815)
88 PLN02949 transferase, transfer 98.4 0.00073 1.6E-08 68.4 28.9 116 346-474 334-461 (463)
89 TIGR02149 glgA_Coryne glycogen 98.4 0.0013 2.8E-08 65.3 30.5 79 348-433 261-352 (388)
90 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00061 1.3E-08 65.6 26.0 306 12-433 54-386 (419)
91 TIGR03087 stp1 sugar transfera 98.3 6.8E-05 1.5E-09 74.8 20.1 110 346-471 279-394 (397)
92 cd03812 GT1_CapH_like This fam 98.3 0.00044 9.6E-09 67.6 25.6 86 346-442 248-338 (358)
93 PRK00654 glgA glycogen synthas 98.3 0.00057 1.2E-08 69.7 25.5 134 287-432 281-427 (466)
94 cd03806 GT1_ALG11_like This fa 98.2 0.0019 4.1E-08 64.8 28.3 79 346-433 304-392 (419)
95 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00017 3.8E-09 70.7 19.5 131 286-432 200-338 (365)
96 PF02350 Epimerase_2: UDP-N-ac 98.1 0.0001 2.3E-09 71.5 14.5 142 285-444 178-327 (346)
97 PLN02846 digalactosyldiacylgly 98.0 0.0049 1.1E-07 61.8 25.8 72 351-433 288-363 (462)
98 TIGR03088 stp2 sugar transfera 98.0 0.012 2.6E-07 58.0 28.8 79 347-433 255-338 (374)
99 cd04950 GT1_like_1 Glycosyltra 98.0 0.017 3.7E-07 57.1 29.6 77 347-433 254-340 (373)
100 PRK15179 Vi polysaccharide bio 98.0 0.015 3.3E-07 61.5 29.7 92 346-446 573-674 (694)
101 cd03792 GT1_Trehalose_phosphor 98.0 0.012 2.5E-07 58.1 27.8 84 346-441 251-343 (372)
102 TIGR02095 glgA glycogen/starch 98.0 0.0044 9.6E-08 63.3 25.3 130 288-432 291-436 (473)
103 PRK01021 lpxB lipid-A-disaccha 97.9 0.0026 5.7E-08 64.9 22.0 145 285-444 411-580 (608)
104 cd03791 GT1_Glycogen_synthase_ 97.9 0.0038 8.2E-08 63.9 24.0 135 287-433 295-442 (476)
105 PRK15484 lipopolysaccharide 1, 97.7 0.0023 5E-08 63.4 16.8 114 345-472 255-376 (380)
106 COG0381 WecB UDP-N-acetylgluco 97.6 0.0064 1.4E-07 58.2 18.5 144 285-448 202-354 (383)
107 cd04946 GT1_AmsK_like This fam 97.6 0.0011 2.4E-08 66.3 14.3 110 347-466 289-405 (407)
108 PF13844 Glyco_transf_41: Glyc 97.6 0.0029 6.3E-08 62.9 16.3 145 285-440 282-435 (468)
109 PLN02316 synthase/transferase 97.6 0.12 2.6E-06 56.7 29.0 113 346-466 899-1027(1036)
110 PF00534 Glycos_transf_1: Glyc 97.5 0.003 6.5E-08 54.6 13.8 90 345-444 71-167 (172)
111 PRK15427 colanic acid biosynth 97.5 0.0026 5.7E-08 63.5 15.0 80 346-433 278-371 (406)
112 PF02684 LpxB: Lipid-A-disacch 97.5 0.014 3.1E-07 56.8 18.8 162 285-461 182-366 (373)
113 COG5017 Uncharacterized conser 97.4 0.0016 3.4E-08 52.1 9.6 108 290-415 2-122 (161)
114 TIGR02918 accessory Sec system 97.4 0.037 8E-07 56.7 22.1 98 346-449 375-484 (500)
115 PRK09814 beta-1,6-galactofuran 97.3 0.0012 2.7E-08 64.0 9.5 111 345-468 205-331 (333)
116 cd03804 GT1_wbaZ_like This fam 97.2 0.0018 4E-08 63.2 9.4 124 290-433 197-326 (351)
117 PRK10125 putative glycosyl tra 97.1 0.34 7.4E-06 48.3 26.6 115 290-428 243-366 (405)
118 PF13692 Glyco_trans_1_4: Glyc 97.0 0.004 8.8E-08 51.4 8.1 127 289-433 3-135 (135)
119 COG0763 LpxB Lipid A disacchar 97.0 0.14 3E-06 49.2 19.0 170 284-470 185-379 (381)
120 PLN02501 digalactosyldiacylgly 96.9 0.39 8.5E-06 50.2 23.0 75 348-433 602-681 (794)
121 KOG4626 O-linked N-acetylgluco 96.8 0.015 3.2E-07 58.4 11.3 142 285-433 756-904 (966)
122 cd01635 Glycosyltransferase_GT 96.7 0.28 6.1E-06 43.8 18.8 49 346-396 160-216 (229)
123 PF13477 Glyco_trans_4_2: Glyc 96.7 0.026 5.7E-07 46.8 10.8 103 8-139 1-107 (139)
124 cd03813 GT1_like_3 This family 96.4 0.13 2.7E-06 52.7 15.9 86 346-441 353-448 (475)
125 PF06722 DUF1205: Protein of u 96.3 0.0047 1E-07 47.5 3.7 50 277-326 30-84 (97)
126 cd04949 GT1_gtfA_like This fam 96.2 0.052 1.1E-06 53.4 11.9 83 346-433 260-345 (372)
127 COG1817 Uncharacterized protei 96.2 1.1 2.3E-05 41.9 19.8 107 14-142 7-115 (346)
128 TIGR02193 heptsyl_trn_I lipopo 96.0 0.26 5.6E-06 47.4 15.2 131 286-431 178-319 (319)
129 PRK10916 ADP-heptose:LPS hepto 95.8 1.4 3E-05 43.0 19.5 103 7-136 1-106 (348)
130 PF13579 Glyco_trans_4_4: Glyc 95.8 0.026 5.6E-07 47.6 6.5 97 22-139 6-104 (160)
131 PF01975 SurE: Survival protei 95.3 0.095 2.1E-06 46.2 8.3 40 7-47 1-40 (196)
132 PHA01633 putative glycosyl tra 95.2 0.51 1.1E-05 45.5 13.6 85 345-432 199-306 (335)
133 PRK10017 colanic acid biosynth 95.2 0.4 8.7E-06 47.9 13.2 99 359-471 323-423 (426)
134 TIGR02195 heptsyl_trn_II lipop 95.1 2.7 5.8E-05 40.7 18.6 101 8-135 1-104 (334)
135 PRK15490 Vi polysaccharide bio 95.0 1.1 2.5E-05 45.9 15.7 74 346-427 454-532 (578)
136 PF06258 Mito_fiss_Elm1: Mitoc 94.8 1.6 3.4E-05 41.7 15.6 57 356-415 221-281 (311)
137 COG3914 Spy Predicted O-linked 94.6 0.13 2.8E-06 51.7 7.7 104 285-398 427-542 (620)
138 PF13524 Glyco_trans_1_2: Glyc 94.5 0.37 8.1E-06 36.6 8.8 82 372-467 9-91 (92)
139 TIGR02201 heptsyl_trn_III lipo 94.4 5.4 0.00012 38.7 19.0 105 8-136 1-108 (344)
140 PRK14098 glycogen synthase; Pr 94.3 0.54 1.2E-05 48.2 11.9 132 288-432 307-450 (489)
141 COG0859 RfaF ADP-heptose:LPS h 93.8 3.5 7.5E-05 40.0 16.0 104 7-136 2-107 (334)
142 PHA01630 putative group 1 glyc 93.7 1.2 2.6E-05 43.1 12.5 109 353-471 196-328 (331)
143 PF08660 Alg14: Oligosaccharid 93.2 0.44 9.5E-06 41.1 7.7 116 10-139 2-129 (170)
144 PF12000 Glyco_trans_4_3: Gkyc 91.9 1.9 4.2E-05 37.0 9.9 41 97-138 54-95 (171)
145 TIGR00715 precor6x_red precorr 91.8 1.4 3.1E-05 40.7 9.7 92 7-137 1-98 (256)
146 PF13439 Glyco_transf_4: Glyco 91.4 0.62 1.3E-05 39.7 6.6 27 18-44 13-39 (177)
147 PRK13933 stationary phase surv 90.0 6.5 0.00014 36.2 12.0 38 7-46 1-38 (253)
148 COG0496 SurE Predicted acid ph 90.0 3.9 8.4E-05 37.3 10.3 112 7-140 1-126 (252)
149 COG4394 Uncharacterized protei 89.4 18 0.00039 33.6 17.6 31 13-43 10-41 (370)
150 COG3660 Predicted nucleoside-d 89.2 18 0.00038 33.2 20.0 38 353-391 234-271 (329)
151 PRK13932 stationary phase surv 89.0 7.7 0.00017 35.8 11.7 116 5-139 4-133 (257)
152 PRK10422 lipopolysaccharide co 88.7 5.5 0.00012 38.9 11.5 110 1-136 1-113 (352)
153 TIGR02400 trehalose_OtsA alpha 88.7 2.8 6E-05 42.6 9.5 102 353-470 342-454 (456)
154 PRK13935 stationary phase surv 87.6 11 0.00024 34.7 11.7 38 7-46 1-38 (253)
155 TIGR00087 surE 5'/3'-nucleotid 86.3 12 0.00026 34.3 11.2 113 7-139 1-128 (244)
156 PRK00346 surE 5'(3')-nucleotid 86.2 14 0.0003 34.0 11.6 111 7-139 1-124 (250)
157 PLN02939 transferase, transfer 86.1 29 0.00062 38.3 15.5 84 346-432 836-930 (977)
158 PRK14099 glycogen synthase; Pr 85.7 11 0.00024 38.6 12.0 37 6-42 3-45 (485)
159 PF02951 GSH-S_N: Prokaryotic 85.2 1.3 2.9E-05 35.4 4.0 39 7-45 1-42 (119)
160 cd03788 GT1_TPS Trehalose-6-Ph 83.6 3.9 8.4E-05 41.6 7.6 103 352-470 346-459 (460)
161 PRK13931 stationary phase surv 82.8 25 0.00055 32.6 11.8 113 7-139 1-129 (261)
162 PRK02261 methylaspartate mutas 81.7 2.9 6.3E-05 34.5 4.8 46 6-51 3-48 (137)
163 PRK05986 cob(I)alamin adenolsy 81.3 19 0.0004 31.6 9.8 105 6-121 22-126 (191)
164 COG2910 Putative NADH-flavin r 80.6 2 4.3E-05 37.0 3.4 33 7-43 1-33 (211)
165 PF02441 Flavoprotein: Flavopr 79.7 2.1 4.6E-05 34.9 3.4 44 7-51 1-44 (129)
166 PRK13934 stationary phase surv 79.3 9.1 0.0002 35.4 7.6 37 7-45 1-37 (266)
167 COG1618 Predicted nucleotide k 79.2 18 0.0004 30.6 8.5 100 6-120 5-110 (179)
168 cd00561 CobA_CobO_BtuR ATP:cor 78.6 25 0.00053 29.9 9.5 103 8-121 4-106 (159)
169 PRK10964 ADP-heptose:LPS hepto 78.5 10 0.00022 36.4 8.3 43 7-49 1-45 (322)
170 COG4370 Uncharacterized protei 78.3 6 0.00013 36.9 6.0 93 352-451 300-396 (412)
171 cd02067 B12-binding B12 bindin 78.1 3.3 7.2E-05 33.1 4.0 36 8-43 1-36 (119)
172 PF05159 Capsule_synth: Capsul 78.0 13 0.00028 34.6 8.6 41 350-393 186-226 (269)
173 COG0438 RfaG Glycosyltransfera 77.5 62 0.0014 30.2 16.6 79 347-433 257-342 (381)
174 PF10649 DUF2478: Protein of u 77.0 41 0.0009 28.5 10.3 117 10-144 2-136 (159)
175 PLN03063 alpha,alpha-trehalose 77.0 13 0.00028 40.7 9.2 103 354-473 363-478 (797)
176 PF02571 CbiJ: Precorrin-6x re 75.7 16 0.00035 33.6 8.3 93 7-137 1-99 (249)
177 TIGR03713 acc_sec_asp1 accesso 74.9 9.8 0.00021 39.3 7.3 74 347-433 409-488 (519)
178 PRK02797 4-alpha-L-fucosyltran 74.0 40 0.00087 31.9 10.3 81 347-432 206-293 (322)
179 PF04413 Glycos_transf_N: 3-De 73.8 8.6 0.00019 33.7 5.7 93 14-137 28-124 (186)
180 COG0003 ArsA Predicted ATPase 73.2 23 0.00049 34.0 8.8 38 7-44 2-40 (322)
181 PF12146 Hydrolase_4: Putative 72.9 7.9 0.00017 28.4 4.5 36 7-42 16-51 (79)
182 cd01974 Nitrogenase_MoFe_beta 72.5 24 0.00052 35.6 9.3 36 97-137 366-401 (435)
183 KOG1111 N-acetylglucosaminyltr 72.2 99 0.0021 30.0 22.1 83 300-391 208-301 (426)
184 PF02310 B12-binding: B12 bind 70.8 8.2 0.00018 30.7 4.6 36 7-42 1-36 (121)
185 cd01425 RPS2 Ribosomal protein 70.1 13 0.00028 32.8 6.0 114 21-142 43-161 (193)
186 cd03793 GT1_Glycogen_synthase_ 69.8 24 0.00052 36.6 8.5 73 356-432 467-551 (590)
187 TIGR00708 cobA cob(I)alamin ad 69.1 47 0.001 28.6 9.0 103 7-121 6-108 (173)
188 cd03789 GT1_LPS_heptosyltransf 69.0 44 0.00095 31.2 9.9 102 8-136 1-105 (279)
189 PRK08057 cobalt-precorrin-6x r 67.9 48 0.001 30.5 9.4 89 7-137 3-98 (248)
190 COG2099 CobK Precorrin-6x redu 67.9 42 0.00091 30.7 8.7 91 7-137 3-99 (257)
191 PF09314 DUF1972: Domain of un 67.7 84 0.0018 27.4 10.5 38 8-45 3-45 (185)
192 PRK13789 phosphoribosylamine-- 67.2 12 0.00026 37.6 5.9 93 1-135 1-96 (426)
193 PF07429 Glyco_transf_56: 4-al 67.2 93 0.002 30.1 11.2 81 347-432 245-332 (360)
194 PRK00090 bioD dithiobiotin syn 66.9 39 0.00085 30.3 8.7 34 9-42 2-36 (222)
195 PF06925 MGDG_synth: Monogalac 66.0 13 0.00029 31.8 5.3 47 91-139 72-124 (169)
196 COG2185 Sbm Methylmalonyl-CoA 65.9 9.9 0.00021 31.4 4.0 37 6-42 12-48 (143)
197 COG0859 RfaF ADP-heptose:LPS h 65.6 26 0.00056 33.9 7.7 100 7-141 176-280 (334)
198 PF02844 GARS_N: Phosphoribosy 65.3 25 0.00053 27.2 5.9 38 97-136 51-91 (100)
199 PF01075 Glyco_transf_9: Glyco 64.6 12 0.00025 34.3 4.9 99 285-391 103-208 (247)
200 PRK01077 cobyrinic acid a,c-di 64.0 53 0.0011 33.3 9.8 107 8-141 5-124 (451)
201 TIGR02919 accessory Sec system 63.8 19 0.00041 36.3 6.5 122 286-433 282-411 (438)
202 PRK10422 lipopolysaccharide co 62.2 39 0.00084 32.9 8.3 98 286-391 182-287 (352)
203 TIGR00347 bioD dethiobiotin sy 62.2 55 0.0012 27.7 8.4 28 13-40 5-32 (166)
204 PRK14501 putative bifunctional 61.8 28 0.0006 37.8 7.8 111 351-473 346-463 (726)
205 COG0052 RpsB Ribosomal protein 61.8 31 0.00068 31.3 6.7 35 110-144 156-192 (252)
206 PRK12342 hypothetical protein; 61.3 14 0.0003 34.1 4.6 42 97-140 98-145 (254)
207 cd01980 Chlide_reductase_Y Chl 61.2 68 0.0015 32.2 9.9 26 110-138 350-375 (416)
208 PF04464 Glyphos_transf: CDP-G 61.0 12 0.00026 36.7 4.6 95 347-451 252-353 (369)
209 TIGR02195 heptsyl_trn_II lipop 60.6 51 0.0011 31.7 8.8 99 7-139 175-278 (334)
210 PRK12311 rpsB 30S ribosomal pr 60.4 23 0.00049 34.0 6.0 34 109-142 151-186 (326)
211 PRK03359 putative electron tra 60.2 15 0.00033 33.9 4.7 42 97-140 101-148 (256)
212 TIGR00379 cobB cobyrinic acid 60.1 55 0.0012 33.2 9.1 107 9-142 2-121 (449)
213 cd03789 GT1_LPS_heptosyltransf 59.5 37 0.00081 31.7 7.5 95 287-391 121-223 (279)
214 cd01423 MGS_CPS_I_III Methylgl 59.1 87 0.0019 24.7 8.5 94 11-136 4-106 (116)
215 cd01424 MGS_CPS_II Methylglyox 59.1 81 0.0018 24.6 8.2 84 18-136 10-100 (110)
216 PRK10490 sensor protein KdpD; 59.1 33 0.00071 38.3 7.9 38 6-43 24-61 (895)
217 TIGR01285 nifN nitrogenase mol 59.1 61 0.0013 32.6 9.2 87 6-137 311-397 (432)
218 COG1797 CobB Cobyrinic acid a, 58.5 11 0.00025 37.1 3.7 33 8-40 2-35 (451)
219 PRK10964 ADP-heptose:LPS hepto 58.3 28 0.0006 33.4 6.5 133 287-432 178-321 (322)
220 cd03466 Nitrogenase_NifN_2 Nit 58.1 79 0.0017 31.8 9.8 36 97-137 361-396 (429)
221 cd00550 ArsA_ATPase Oxyanion-t 57.6 46 0.001 30.7 7.5 35 10-44 4-38 (254)
222 TIGR02015 BchY chlorophyllide 56.3 97 0.0021 31.1 10.0 32 7-43 286-317 (422)
223 COG1484 DnaC DNA replication p 55.9 13 0.00028 34.4 3.5 46 6-51 105-150 (254)
224 PF00862 Sucrose_synth: Sucros 55.6 18 0.00039 36.5 4.5 42 100-141 391-434 (550)
225 cd02070 corrinoid_protein_B12- 55.5 20 0.00043 31.8 4.5 44 6-49 82-125 (201)
226 PF05693 Glycogen_syn: Glycoge 55.2 37 0.0008 35.3 6.8 92 355-449 461-566 (633)
227 COG2109 BtuR ATP:corrinoid ade 55.1 1.1E+02 0.0024 26.7 8.6 102 9-121 31-133 (198)
228 cd01965 Nitrogenase_MoFe_beta_ 55.1 33 0.00071 34.5 6.6 36 97-137 360-395 (428)
229 PRK07206 hypothetical protein; 55.0 53 0.0011 32.8 8.1 33 7-44 3-35 (416)
230 PRK08305 spoVFB dipicolinate s 54.9 19 0.00041 31.7 4.2 41 6-46 5-45 (196)
231 PF06506 PrpR_N: Propionate ca 54.8 14 0.00029 32.0 3.3 69 363-432 32-123 (176)
232 cd02071 MM_CoA_mut_B12_BD meth 54.6 20 0.00044 28.7 4.1 37 8-44 1-37 (122)
233 PHA02542 41 41 helicase; Provi 54.5 14 0.0003 37.7 3.7 41 9-49 193-233 (473)
234 PF02374 ArsA_ATPase: Anion-tr 54.0 18 0.00038 34.5 4.2 39 7-45 1-40 (305)
235 COG1703 ArgK Putative periplas 54.0 1.1E+02 0.0023 29.0 8.9 38 7-44 52-89 (323)
236 PRK06249 2-dehydropantoate 2-r 53.9 17 0.00036 34.9 4.1 38 1-44 1-38 (313)
237 TIGR02201 heptsyl_trn_III lipo 53.9 99 0.0022 29.9 9.6 101 7-139 182-287 (344)
238 TIGR02852 spore_dpaB dipicolin 53.7 16 0.00034 31.9 3.5 37 8-44 2-38 (187)
239 PF02606 LpxK: Tetraacyldisacc 53.1 39 0.00084 32.6 6.4 36 9-45 40-75 (326)
240 COG4088 Predicted nucleotide k 53.1 16 0.00035 32.3 3.4 34 9-42 4-37 (261)
241 KOG2941 Beta-1,4-mannosyltrans 52.3 1.9E+02 0.0041 28.0 10.3 126 6-144 12-142 (444)
242 PF00731 AIRC: AIR carboxylase 52.0 1.4E+02 0.0031 25.0 12.3 139 289-451 2-148 (150)
243 PRK10916 ADP-heptose:LPS hepto 51.5 33 0.00071 33.3 5.8 103 7-139 181-288 (348)
244 TIGR03029 EpsG chain length de 51.3 1.6E+02 0.0035 27.3 10.2 37 6-42 102-140 (274)
245 cd03114 ArgK-like The function 51.2 1.2E+02 0.0025 25.3 8.3 35 9-43 2-36 (148)
246 PRK06732 phosphopantothenate-- 51.0 22 0.00049 32.2 4.2 36 7-42 1-48 (229)
247 cd01981 Pchlide_reductase_B Pc 50.8 1.3E+02 0.0029 30.1 10.2 37 98-139 360-396 (430)
248 PRK14478 nitrogenase molybdenu 50.5 1.1E+02 0.0024 31.2 9.6 93 6-136 324-416 (475)
249 cd07039 TPP_PYR_POX Pyrimidine 50.5 1.4E+02 0.003 25.4 8.8 26 367-392 65-96 (164)
250 PRK05114 hypothetical protein; 50.5 63 0.0014 21.9 5.0 36 436-475 11-46 (59)
251 TIGR02398 gluc_glyc_Psyn gluco 50.3 62 0.0013 33.1 7.6 110 350-474 365-484 (487)
252 PF00551 Formyl_trans_N: Formy 50.2 66 0.0014 27.9 6.9 42 97-140 68-110 (181)
253 PF04127 DFP: DNA / pantothena 50.0 18 0.00038 31.7 3.2 38 7-44 4-53 (185)
254 PRK10353 3-methyl-adenine DNA 49.7 70 0.0015 27.9 6.7 61 390-452 22-99 (187)
255 PF07355 GRDB: Glycine/sarcosi 49.6 34 0.00073 32.9 5.1 45 91-137 63-117 (349)
256 cd01968 Nitrogenase_NifE_I Nit 49.2 1.4E+02 0.003 29.8 10.0 35 98-137 346-380 (410)
257 PRK05920 aromatic acid decarbo 49.1 25 0.00055 31.2 4.1 43 6-49 3-45 (204)
258 PRK08006 replicative DNA helic 48.8 44 0.00095 34.1 6.3 41 9-49 227-268 (471)
259 PRK14098 glycogen synthase; Pr 48.8 30 0.00066 35.5 5.2 37 6-42 5-47 (489)
260 PRK05595 replicative DNA helic 48.6 53 0.0012 33.2 6.9 42 9-50 204-246 (444)
261 TIGR01283 nifE nitrogenase mol 48.3 1.4E+02 0.0031 30.3 10.0 36 97-137 384-419 (456)
262 PRK08760 replicative DNA helic 48.2 11 0.00023 38.6 1.8 41 9-49 232-273 (476)
263 PRK14099 glycogen synthase; Pr 47.7 33 0.00071 35.2 5.3 85 346-433 349-447 (485)
264 PRK07313 phosphopantothenoylcy 47.7 21 0.00046 31.1 3.4 42 7-49 2-43 (182)
265 COG1090 Predicted nucleoside-d 47.6 94 0.002 29.0 7.5 20 24-43 12-31 (297)
266 smart00851 MGS MGS-like domain 47.4 1.2E+02 0.0025 22.7 7.5 79 23-135 2-89 (90)
267 PF03701 UPF0181: Uncharacteri 47.3 80 0.0017 20.8 5.2 36 436-475 11-46 (51)
268 cd00532 MGS-like MGS-like doma 47.3 1.4E+02 0.003 23.4 8.1 84 19-136 10-104 (112)
269 TIGR02370 pyl_corrinoid methyl 47.2 30 0.00066 30.5 4.3 46 6-51 84-129 (197)
270 PF01210 NAD_Gly3P_dh_N: NAD-d 46.8 11 0.00025 31.8 1.5 32 8-44 1-32 (157)
271 COG0132 BioD Dethiobiotin synt 46.7 2.2E+02 0.0048 25.7 11.4 124 8-142 3-147 (223)
272 PF01075 Glyco_transf_9: Glyco 46.4 32 0.0007 31.3 4.6 103 6-141 105-212 (247)
273 TIGR01501 MthylAspMutase methy 46.3 36 0.00079 27.9 4.3 45 7-51 2-46 (134)
274 COG1663 LpxK Tetraacyldisaccha 45.7 44 0.00096 32.0 5.3 34 9-42 52-85 (336)
275 PRK11519 tyrosine kinase; Prov 45.5 59 0.0013 35.3 7.0 38 6-43 525-564 (719)
276 KOG0853 Glycosyltransferase [C 44.9 16 0.00035 37.0 2.4 59 377-444 381-442 (495)
277 TIGR02113 coaC_strep phosphopa 44.9 29 0.00062 30.1 3.7 41 8-49 2-42 (177)
278 PF08323 Glyco_transf_5: Starc 44.8 19 0.0004 33.1 2.7 23 21-43 20-42 (245)
279 PRK06904 replicative DNA helic 44.8 28 0.00061 35.5 4.2 42 9-50 224-266 (472)
280 PRK06749 replicative DNA helic 44.5 66 0.0014 32.4 6.7 41 9-49 189-229 (428)
281 PRK10867 signal recognition pa 44.4 94 0.002 31.3 7.7 40 8-47 102-142 (433)
282 cd01121 Sms Sms (bacterial rad 43.6 71 0.0015 31.4 6.6 41 9-49 85-125 (372)
283 PRK11823 DNA repair protein Ra 42.5 75 0.0016 32.2 6.8 41 9-49 83-123 (446)
284 TIGR00421 ubiX_pad polyprenyl 42.4 22 0.00048 30.9 2.6 41 8-49 1-41 (181)
285 TIGR00416 sms DNA repair prote 42.3 1E+02 0.0022 31.3 7.7 41 9-49 97-137 (454)
286 COG0299 PurN Folate-dependent 41.7 2.5E+02 0.0053 24.8 9.9 133 288-447 52-186 (200)
287 PRK00784 cobyric acid synthase 41.6 2.5E+02 0.0053 28.9 10.5 35 8-42 4-39 (488)
288 PRK06321 replicative DNA helic 41.6 78 0.0017 32.3 6.8 41 9-49 229-270 (472)
289 PLN02470 acetolactate synthase 41.6 65 0.0014 33.9 6.5 92 293-392 2-109 (585)
290 TIGR01286 nifK nitrogenase mol 41.3 2E+02 0.0044 29.7 9.8 36 97-137 426-461 (515)
291 COG3516 Predicted component of 41.3 90 0.0019 26.4 5.8 56 408-473 93-150 (169)
292 PRK06849 hypothetical protein; 41.2 54 0.0012 32.4 5.6 35 6-44 4-38 (389)
293 KOG0780 Signal recognition par 41.0 76 0.0017 31.1 6.1 39 7-45 102-140 (483)
294 PF10083 DUF2321: Uncharacteri 40.8 68 0.0015 26.8 5.0 79 390-476 77-155 (158)
295 PRK05632 phosphate acetyltrans 40.6 2E+02 0.0044 31.0 10.1 103 8-142 4-117 (684)
296 PRK06395 phosphoribosylamine-- 40.1 1.6E+02 0.0034 29.8 8.7 32 6-42 2-33 (435)
297 cd02032 Bchl_like This family 40.0 48 0.001 30.7 4.8 37 7-43 1-37 (267)
298 CHL00072 chlL photochlorophyll 39.9 53 0.0012 31.0 5.0 38 7-44 1-38 (290)
299 PF03808 Glyco_tran_WecB: Glyc 39.8 1.9E+02 0.0041 24.8 8.1 97 21-142 35-136 (172)
300 PRK06029 3-octaprenyl-4-hydrox 38.8 35 0.00075 29.8 3.3 43 7-50 2-45 (185)
301 cd02069 methionine_synthase_B1 38.7 56 0.0012 29.3 4.7 44 6-49 88-131 (213)
302 PRK07414 cob(I)yrinic acid a,c 38.5 2.6E+02 0.0057 24.2 8.5 104 8-121 23-126 (178)
303 PRK09165 replicative DNA helic 38.5 69 0.0015 32.9 5.9 43 9-51 220-277 (497)
304 PRK14618 NAD(P)H-dependent gly 38.3 40 0.00087 32.4 4.1 36 1-43 1-36 (328)
305 TIGR01918 various_sel_PB selen 38.3 63 0.0014 32.0 5.2 48 89-138 57-114 (431)
306 PRK01175 phosphoribosylformylg 38.3 3.3E+02 0.0072 25.3 11.1 57 6-75 3-59 (261)
307 TIGR01917 gly_red_sel_B glycin 38.2 63 0.0014 32.0 5.2 49 88-138 56-114 (431)
308 TIGR01281 DPOR_bchL light-inde 37.9 55 0.0012 30.3 4.8 36 7-42 1-36 (268)
309 COG2861 Uncharacterized protei 37.9 1.3E+02 0.0028 27.4 6.6 40 96-136 136-178 (250)
310 TIGR00640 acid_CoA_mut_C methy 37.5 69 0.0015 26.2 4.7 38 6-43 2-39 (132)
311 PRK07236 hypothetical protein; 37.5 61 0.0013 31.9 5.3 37 1-42 1-37 (386)
312 PF02702 KdpD: Osmosensitive K 37.5 57 0.0012 28.9 4.3 38 6-43 5-42 (211)
313 COG0801 FolK 7,8-dihydro-6-hyd 37.2 73 0.0016 27.0 4.8 35 289-323 3-37 (160)
314 COG0205 PfkA 6-phosphofructoki 36.8 1.4E+02 0.003 29.0 7.3 37 6-42 2-40 (347)
315 PRK09620 hypothetical protein; 36.7 61 0.0013 29.4 4.7 37 7-43 4-52 (229)
316 PF04493 Endonuclease_5: Endon 36.4 73 0.0016 28.3 5.0 41 97-137 76-123 (206)
317 TIGR02655 circ_KaiC circadian 36.3 1.4E+02 0.0031 30.6 7.8 44 8-51 265-308 (484)
318 COG0151 PurD Phosphoribosylami 36.2 2E+02 0.0043 28.6 8.2 88 7-136 1-92 (428)
319 PHA02754 hypothetical protein; 35.9 73 0.0016 21.5 3.6 25 426-452 6-30 (67)
320 PRK05784 phosphoribosylamine-- 35.9 2.2E+02 0.0048 29.2 9.1 31 7-42 1-33 (486)
321 PRK05234 mgsA methylglyoxal sy 35.7 2.6E+02 0.0055 23.2 9.3 97 6-137 4-112 (142)
322 PRK12446 undecaprenyldiphospho 35.7 97 0.0021 30.2 6.3 32 360-391 86-120 (352)
323 PLN02939 transferase, transfer 35.6 62 0.0013 35.9 5.2 37 6-42 481-523 (977)
324 cd00672 CysRS_core catalytic c 35.4 1.2E+02 0.0027 27.1 6.4 89 17-134 36-129 (213)
325 COG1748 LYS9 Saccharopine dehy 35.2 2.9E+02 0.0062 27.4 9.2 98 7-143 2-104 (389)
326 PRK07004 replicative DNA helic 35.0 88 0.0019 31.8 6.0 41 9-49 216-257 (460)
327 PRK00207 sulfur transfer compl 35.0 91 0.002 25.3 5.0 36 7-42 1-40 (128)
328 COG3349 Uncharacterized conser 35.0 38 0.00082 34.3 3.3 34 7-45 1-34 (485)
329 cd02065 B12-binding_like B12 b 35.0 57 0.0012 25.9 3.9 35 9-43 2-36 (125)
330 KOG0832 Mitochondrial/chloropl 34.9 28 0.00061 31.1 2.1 113 17-142 91-207 (251)
331 TIGR02193 heptsyl_trn_I lipopo 34.9 1.7E+02 0.0037 27.8 7.8 98 7-139 180-281 (319)
332 PRK12475 thiamine/molybdopteri 34.8 3E+02 0.0064 26.7 9.3 32 6-42 24-56 (338)
333 cd06559 Endonuclease_V Endonuc 34.8 44 0.00095 29.8 3.3 39 99-137 82-127 (208)
334 PRK07773 replicative DNA helic 34.7 59 0.0013 36.2 5.1 43 9-51 220-263 (886)
335 PRK05636 replicative DNA helic 34.5 52 0.0011 33.9 4.3 41 9-49 268-309 (505)
336 PF02572 CobA_CobO_BtuR: ATP:c 34.4 48 0.001 28.5 3.4 102 8-120 5-106 (172)
337 PF13450 NAD_binding_8: NAD(P) 34.4 49 0.0011 23.3 3.0 19 24-42 9-27 (68)
338 PF02776 TPP_enzyme_N: Thiamin 34.3 1.6E+02 0.0034 25.2 6.7 66 363-432 64-145 (172)
339 TIGR00313 cobQ cobyric acid sy 34.3 3.1E+02 0.0067 28.1 9.8 29 15-43 8-36 (475)
340 PRK12921 2-dehydropantoate 2-r 34.0 39 0.00085 32.0 3.2 32 7-43 1-32 (305)
341 PRK13982 bifunctional SbtC-lik 33.9 60 0.0013 33.0 4.5 39 6-44 256-306 (475)
342 PF12695 Abhydrolase_5: Alpha/ 33.8 84 0.0018 25.3 4.9 34 9-42 1-34 (145)
343 PRK14477 bifunctional nitrogen 33.8 2.7E+02 0.0059 31.2 9.9 96 6-139 320-415 (917)
344 PRK05579 bifunctional phosphop 33.6 59 0.0013 32.4 4.4 44 6-50 6-49 (399)
345 PRK06522 2-dehydropantoate 2-r 33.5 45 0.00097 31.5 3.5 31 7-42 1-31 (304)
346 PF01372 Melittin: Melittin; 33.4 6.6 0.00014 21.2 -1.2 17 374-390 1-17 (26)
347 TIGR01005 eps_transp_fam exopo 33.1 3.5E+02 0.0076 29.5 10.7 37 7-43 546-584 (754)
348 PF08433 KTI12: Chromatin asso 32.9 2.8E+02 0.006 25.9 8.5 100 9-143 4-109 (270)
349 PRK15062 hydrogenase isoenzyme 32.8 92 0.002 30.2 5.3 139 284-472 128-268 (364)
350 PF01695 IstB_IS21: IstB-like 32.5 48 0.001 28.7 3.2 46 6-51 47-92 (178)
351 PRK00750 lysK lysyl-tRNA synth 32.4 96 0.0021 32.0 5.8 31 21-51 46-76 (510)
352 PF04244 DPRP: Deoxyribodipyri 32.2 41 0.00088 30.4 2.8 26 19-44 47-72 (224)
353 PRK09219 xanthine phosphoribos 32.2 96 0.0021 27.2 5.0 38 99-138 41-80 (189)
354 PF06564 YhjQ: YhjQ protein; 32.2 89 0.0019 28.6 4.9 35 8-42 3-38 (243)
355 cd02034 CooC The accessory pro 32.0 1.1E+02 0.0024 24.3 4.9 37 8-44 1-37 (116)
356 PF10163 EnY2: Transcription f 31.8 89 0.0019 23.3 4.1 52 419-475 15-66 (86)
357 PF00148 Oxidored_nitro: Nitro 31.8 2.1E+02 0.0046 28.2 8.2 89 7-137 272-365 (398)
358 PRK13604 luxD acyl transferase 31.8 90 0.002 29.7 5.1 35 6-40 36-70 (307)
359 TIGR01007 eps_fam capsular exo 31.6 85 0.0018 27.6 4.8 37 7-43 17-55 (204)
360 cd00861 ProRS_anticodon_short 31.5 83 0.0018 23.4 4.1 35 7-41 2-38 (94)
361 COG0162 TyrS Tyrosyl-tRNA synt 31.3 66 0.0014 31.9 4.2 39 6-46 34-75 (401)
362 cd00674 LysRS_core_class_I cat 31.1 1.1E+02 0.0024 29.8 5.7 31 21-51 42-72 (353)
363 PRK08535 translation initiatio 30.7 2.6E+02 0.0056 26.8 8.1 33 110-142 195-233 (310)
364 TIGR02329 propionate_PrpR prop 30.3 2.4E+02 0.0053 29.3 8.3 109 18-140 37-172 (526)
365 PRK10037 cell division protein 30.2 76 0.0016 29.1 4.3 35 8-42 3-38 (250)
366 TIGR02699 archaeo_AfpA archaeo 30.2 58 0.0013 28.1 3.2 37 9-46 2-40 (174)
367 PRK09841 cryptic autophosphory 30.0 6.6E+02 0.014 27.3 12.0 39 6-44 530-570 (726)
368 PF00070 Pyr_redox: Pyridine n 30.0 80 0.0017 22.8 3.6 23 22-44 10-32 (80)
369 PRK06835 DNA replication prote 29.9 60 0.0013 31.3 3.7 43 7-49 184-226 (329)
370 PRK06718 precorrin-2 dehydroge 29.8 3.9E+02 0.0085 23.6 12.5 148 280-452 5-165 (202)
371 COG2086 FixA Electron transfer 29.4 97 0.0021 28.7 4.7 41 97-139 100-146 (260)
372 TIGR02700 flavo_MJ0208 archaeo 29.4 69 0.0015 29.2 3.8 40 9-49 2-44 (234)
373 TIGR02853 spore_dpaA dipicolin 29.3 3.7E+02 0.008 25.3 8.8 108 286-414 151-260 (287)
374 COG0541 Ffh Signal recognition 29.3 1.3E+02 0.0028 30.1 5.7 41 6-46 100-140 (451)
375 PRK00048 dihydrodipicolinate r 29.2 2.6E+02 0.0056 25.8 7.7 56 356-415 53-114 (257)
376 PF10727 Rossmann-like: Rossma 29.2 90 0.0019 25.3 4.0 33 6-43 10-42 (127)
377 PRK12815 carB carbamoyl phosph 29.2 5.7E+02 0.012 29.4 11.7 44 1-44 1-51 (1068)
378 PRK03094 hypothetical protein; 29.0 51 0.0011 24.2 2.3 20 23-42 10-29 (80)
379 TIGR01380 glut_syn glutathione 29.0 72 0.0016 30.5 4.1 39 7-45 1-42 (312)
380 cd01983 Fer4_NifH The Fer4_Nif 28.9 1.3E+02 0.0028 22.0 4.9 33 9-41 2-34 (99)
381 PRK14077 pnk inorganic polypho 28.5 72 0.0016 30.1 3.8 53 362-432 63-119 (287)
382 PF01656 CbiA: CobQ/CobB/MinD/ 28.5 88 0.0019 27.0 4.3 32 14-45 7-38 (195)
383 cd01141 TroA_d Periplasmic bin 28.4 98 0.0021 26.7 4.5 38 98-138 60-99 (186)
384 TIGR00511 ribulose_e2b2 ribose 28.4 1.5E+02 0.0034 28.1 6.1 32 110-141 190-227 (301)
385 CHL00076 chlB photochlorophyll 28.4 80 0.0017 32.6 4.5 36 98-138 364-399 (513)
386 PLN02948 phosphoribosylaminoim 28.3 7.3E+02 0.016 26.2 12.5 86 366-456 466-563 (577)
387 TIGR01470 cysG_Nterm siroheme 28.3 4.2E+02 0.0092 23.4 9.6 149 280-451 4-164 (205)
388 PF07015 VirC1: VirC1 protein; 28.2 1.3E+02 0.0029 27.2 5.3 38 9-46 4-42 (231)
389 COG3140 Uncharacterized protei 28.2 1.9E+02 0.0041 19.4 4.7 35 436-474 11-45 (60)
390 PF03693 RHH_2: Uncharacterise 28.1 98 0.0021 22.8 3.7 52 418-474 28-79 (80)
391 PLN02929 NADH kinase 28.1 70 0.0015 30.3 3.7 63 367-433 66-137 (301)
392 COG0569 TrkA K+ transport syst 28.0 69 0.0015 28.9 3.6 32 7-43 1-32 (225)
393 PRK13236 nitrogenase reductase 28.0 1.2E+02 0.0026 28.7 5.3 38 7-44 6-44 (296)
394 cd06533 Glyco_transf_WecG_TagA 28.0 3.1E+02 0.0067 23.4 7.4 91 22-136 34-129 (171)
395 cd01976 Nitrogenase_MoFe_alpha 27.8 69 0.0015 32.2 3.8 36 98-138 359-394 (421)
396 PRK02910 light-independent pro 27.7 98 0.0021 32.1 5.0 35 99-138 353-387 (519)
397 TIGR01278 DPOR_BchB light-inde 27.7 96 0.0021 32.1 5.0 36 99-139 355-390 (511)
398 PRK14476 nitrogenase molybdenu 27.6 4.2E+02 0.009 26.9 9.4 85 6-137 311-395 (455)
399 PF13460 NAD_binding_10: NADH( 27.6 69 0.0015 27.4 3.4 29 14-44 4-32 (183)
400 COG1066 Sms Predicted ATP-depe 27.5 85 0.0018 31.1 4.1 103 9-140 96-219 (456)
401 COG0240 GpsA Glycerol-3-phosph 27.2 79 0.0017 30.3 3.8 32 7-43 2-33 (329)
402 COG0503 Apt Adenine/guanine ph 27.1 1.1E+02 0.0024 26.5 4.6 37 99-137 44-82 (179)
403 PRK01911 ppnK inorganic polyph 27.1 77 0.0017 30.0 3.8 54 362-433 63-120 (292)
404 PLN02935 Bifunctional NADH kin 27.0 74 0.0016 32.4 3.8 52 363-433 262-318 (508)
405 COG2120 Uncharacterized protei 26.9 1.1E+02 0.0024 27.8 4.7 37 6-42 10-46 (237)
406 KOG1250 Threonine/serine dehyd 26.8 1.1E+02 0.0025 30.0 4.7 116 286-433 193-316 (457)
407 cd02037 MRP-like MRP (Multiple 26.8 1.1E+02 0.0025 25.8 4.6 35 9-43 2-37 (169)
408 TIGR03358 VI_chp_5 type VI sec 26.5 2.9E+02 0.0063 23.4 6.6 56 408-473 88-145 (159)
409 PF03721 UDPG_MGDP_dh_N: UDP-g 26.5 95 0.002 27.1 4.0 32 7-43 1-32 (185)
410 cd01715 ETF_alpha The electron 26.5 1.3E+02 0.0027 25.7 4.8 42 96-139 71-115 (168)
411 PRK00885 phosphoribosylamine-- 26.3 2E+02 0.0043 28.8 6.9 30 7-41 1-31 (420)
412 TIGR00521 coaBC_dfp phosphopan 26.3 77 0.0017 31.4 3.8 43 6-49 3-45 (390)
413 PRK13869 plasmid-partitioning 26.2 1.1E+02 0.0023 30.7 4.8 38 7-44 121-160 (405)
414 PF14626 RNase_Zc3h12a_2: Zc3h 26.1 74 0.0016 25.3 2.8 30 20-49 9-38 (122)
415 PRK14619 NAD(P)H-dependent gly 25.9 77 0.0017 30.2 3.7 32 6-42 4-35 (308)
416 PF05591 DUF770: Protein of un 25.9 3.6E+02 0.0078 22.8 7.1 57 408-474 87-145 (157)
417 TIGR02482 PFKA_ATP 6-phosphofr 25.7 56 0.0012 31.1 2.6 39 360-398 86-128 (301)
418 KOG1209 1-Acyl dihydroxyaceton 25.4 1.2E+02 0.0027 27.1 4.3 38 1-40 1-38 (289)
419 PF03698 UPF0180: Uncharacteri 25.3 63 0.0014 23.8 2.2 22 23-44 10-31 (80)
420 PRK08229 2-dehydropantoate 2-r 25.2 79 0.0017 30.5 3.7 32 7-43 3-34 (341)
421 PRK00652 lpxK tetraacyldisacch 25.2 1.2E+02 0.0026 29.3 4.7 31 12-42 57-87 (325)
422 TIGR00467 lysS_arch lysyl-tRNA 25.1 1.2E+02 0.0026 31.4 5.0 32 20-51 40-71 (515)
423 cd06318 PBP1_ABC_sugar_binding 25.1 5.3E+02 0.011 23.5 9.8 30 110-139 55-88 (282)
424 PRK02649 ppnK inorganic polyph 25.0 83 0.0018 30.0 3.6 53 363-433 68-124 (305)
425 COG2085 Predicted dinucleotide 24.7 1.1E+02 0.0025 27.2 4.1 26 16-43 8-33 (211)
426 COG2894 MinD Septum formation 24.7 1.4E+02 0.0031 26.9 4.6 36 8-43 3-40 (272)
427 COG3195 Uncharacterized protei 24.7 3E+02 0.0065 23.4 6.2 93 356-450 64-164 (176)
428 TIGR03453 partition_RepA plasm 24.4 1.2E+02 0.0025 30.1 4.7 39 6-44 103-143 (387)
429 COG2084 MmsB 3-hydroxyisobutyr 24.3 1E+02 0.0022 29.0 4.0 31 8-43 2-32 (286)
430 PF06180 CbiK: Cobalt chelatas 24.3 1.1E+02 0.0024 28.4 4.2 40 287-326 1-43 (262)
431 COG2230 Cfa Cyclopropane fatty 24.3 46 0.00099 31.2 1.7 39 373-411 81-121 (283)
432 TIGR01744 XPRTase xanthine pho 24.2 1.6E+02 0.0034 25.9 5.0 28 110-137 50-79 (191)
433 COG0107 HisF Imidazoleglycerol 24.1 1.8E+02 0.0039 26.3 5.2 84 279-415 91-174 (256)
434 PRK04885 ppnK inorganic polyph 24.1 45 0.00098 31.0 1.6 50 367-432 37-92 (265)
435 PRK05579 bifunctional phosphop 23.9 5.1E+02 0.011 25.8 9.0 51 381-432 112-182 (399)
436 PF08844 DUF1815: Domain of un 23.7 1.2E+02 0.0027 22.8 3.4 23 20-42 16-38 (105)
437 PRK01372 ddl D-alanine--D-alan 23.7 1.4E+02 0.003 28.2 5.0 38 6-43 4-45 (304)
438 PRK14092 2-amino-4-hydroxy-6-h 23.6 1.9E+02 0.0042 24.6 5.2 31 286-316 6-36 (163)
439 PRK15408 autoinducer 2-binding 23.6 6.6E+02 0.014 24.1 10.0 38 99-139 72-113 (336)
440 COG0287 TyrA Prephenate dehydr 23.6 1.2E+02 0.0025 28.6 4.2 41 6-51 3-43 (279)
441 TIGR00624 tag DNA-3-methyladen 23.5 2.4E+02 0.0052 24.5 5.8 61 390-452 21-98 (179)
442 PRK08155 acetolactate synthase 23.4 1.6E+02 0.0034 30.9 5.7 80 303-392 14-109 (564)
443 TIGR01761 thiaz-red thiazoliny 23.3 3.5E+02 0.0075 26.3 7.6 78 353-433 52-136 (343)
444 PF06032 DUF917: Protein of un 23.3 1.3E+02 0.0028 29.4 4.6 102 12-136 16-121 (353)
445 KOG3339 Predicted glycosyltran 23.3 5.1E+02 0.011 22.7 8.3 26 7-33 39-64 (211)
446 PF01012 ETF: Electron transfe 23.2 83 0.0018 26.6 3.0 41 97-139 79-122 (164)
447 PLN00016 RNA-binding protein; 23.2 1E+02 0.0022 30.3 4.1 36 6-43 52-89 (378)
448 PRK03378 ppnK inorganic polyph 23.1 96 0.0021 29.4 3.6 53 363-433 63-119 (292)
449 PF00391 PEP-utilizers: PEP-ut 23.1 1.3E+02 0.0029 21.9 3.7 28 110-137 30-59 (80)
450 TIGR03026 NDP-sugDHase nucleot 23.0 1.1E+02 0.0024 30.5 4.3 31 7-42 1-31 (411)
451 KOG0081 GTPase Rab27, small G 22.9 1.4E+02 0.0031 25.1 4.1 37 108-144 122-168 (219)
452 PRK06276 acetolactate synthase 22.9 5.7E+02 0.012 26.9 9.8 26 367-392 65-96 (586)
453 cd00763 Bacterial_PFK Phosphof 22.9 66 0.0014 30.8 2.5 37 360-396 87-126 (317)
454 COG0771 MurD UDP-N-acetylmuram 22.9 1.4E+02 0.003 30.2 4.8 35 6-45 7-41 (448)
455 PHA02518 ParA-like protein; Pr 22.9 1.7E+02 0.0037 25.6 5.1 36 9-44 3-39 (211)
456 PRK04020 rps2P 30S ribosomal p 22.6 77 0.0017 28.1 2.7 33 110-142 114-148 (204)
457 PRK08558 adenine phosphoribosy 22.5 1.6E+02 0.0034 26.9 4.8 28 110-137 111-140 (238)
458 PF00289 CPSase_L_chain: Carba 22.4 2.4E+02 0.0053 22.1 5.2 73 300-382 9-89 (110)
459 PRK12825 fabG 3-ketoacyl-(acyl 22.3 1.8E+02 0.0039 26.0 5.3 38 1-42 1-38 (249)
460 CHL00067 rps2 ribosomal protei 22.2 85 0.0018 28.5 3.0 35 109-143 160-196 (230)
461 PRK03372 ppnK inorganic polyph 22.2 1E+02 0.0022 29.4 3.6 53 363-433 72-128 (306)
462 TIGR01743 purR_Bsub pur operon 22.0 1.8E+02 0.0038 27.2 5.0 29 110-138 128-158 (268)
463 cd07025 Peptidase_S66 LD-Carbo 21.8 1.5E+02 0.0032 27.9 4.6 28 298-325 44-71 (282)
464 PRK08125 bifunctional UDP-gluc 21.8 5.2E+02 0.011 27.7 9.3 39 100-140 67-106 (660)
465 PRK00421 murC UDP-N-acetylmura 21.8 1.3E+02 0.0029 30.5 4.7 32 6-41 7-38 (461)
466 COG1422 Predicted membrane pro 21.7 5.6E+02 0.012 22.6 7.6 84 376-472 23-109 (201)
467 PRK07533 enoyl-(acyl carrier p 21.7 1.8E+02 0.0039 26.6 5.2 34 7-42 10-44 (258)
468 PF10087 DUF2325: Uncharacteri 21.4 2.3E+02 0.0049 21.5 4.8 36 110-145 48-89 (97)
469 TIGR01969 minD_arch cell divis 21.4 1.7E+02 0.0037 26.4 5.0 35 9-43 3-38 (251)
470 PF13614 AAA_31: AAA domain; P 21.4 1.5E+02 0.0033 24.4 4.3 38 9-46 3-41 (157)
471 smart00096 UTG Uteroglobin. 21.3 2.2E+02 0.0047 20.3 4.2 51 418-473 16-66 (69)
472 cd02072 Glm_B12_BD B12 binding 21.3 1.3E+02 0.0029 24.4 3.6 42 8-49 1-42 (128)
473 TIGR03837 efp_adjacent_2 conse 21.3 1.7E+02 0.0037 28.5 4.9 35 9-43 3-38 (371)
474 PRK09213 pur operon repressor; 21.2 1.9E+02 0.004 27.1 5.0 29 110-138 130-160 (271)
475 PHA02519 plasmid partition pro 21.2 1.6E+02 0.0034 29.3 4.8 35 7-41 106-142 (387)
476 PRK03767 NAD(P)H:quinone oxido 21.1 1.8E+02 0.0038 25.6 4.8 36 7-42 2-39 (200)
477 TIGR00075 hypD hydrogenase exp 21.1 2E+02 0.0043 28.0 5.3 138 285-472 135-274 (369)
478 PRK08939 primosomal protein Dn 21.1 1E+02 0.0022 29.4 3.4 43 7-49 157-199 (306)
479 PF14359 DUF4406: Domain of un 21.1 1.5E+02 0.0033 22.5 3.7 18 21-38 16-33 (92)
480 PRK06603 enoyl-(acyl carrier p 21.0 1.9E+02 0.0042 26.4 5.3 34 7-41 8-41 (260)
481 TIGR02483 PFK_mixed phosphofru 20.9 79 0.0017 30.4 2.6 37 360-396 89-128 (324)
482 PRK13849 putative crown gall t 20.9 1.6E+02 0.0035 26.7 4.5 38 8-45 3-41 (231)
483 PF05762 VWA_CoxE: VWA domain 20.9 1.7E+02 0.0036 26.4 4.6 37 7-43 151-188 (222)
484 cd08783 Death_MALT1 Death doma 20.9 2.6E+02 0.0056 21.3 4.7 66 396-475 21-86 (97)
485 cd01421 IMPCH Inosine monophos 20.7 4.6E+02 0.01 22.9 6.9 87 21-121 11-102 (187)
486 cd01985 ETF The electron trans 20.7 1.6E+02 0.0034 25.4 4.3 39 97-137 80-121 (181)
487 PF01924 HypD: Hydrogenase for 20.6 1.5E+02 0.0032 28.7 4.2 138 284-472 123-263 (355)
488 PRK06505 enoyl-(acyl carrier p 20.6 1.9E+02 0.0041 26.8 5.1 39 1-41 1-40 (271)
489 PRK06719 precorrin-2 dehydroge 20.5 1.2E+02 0.0026 25.6 3.4 31 7-42 14-44 (157)
490 COG0467 RAD55 RecA-superfamily 20.5 1.5E+02 0.0033 27.3 4.4 45 7-51 24-68 (260)
491 PRK04761 ppnK inorganic polyph 20.5 57 0.0012 30.0 1.5 26 367-392 27-56 (246)
492 COG1058 CinA Predicted nucleot 20.5 3.3E+02 0.0071 25.2 6.3 27 110-136 60-92 (255)
493 PF10657 RC-P840_PscD: Photosy 20.3 1.4E+02 0.0031 23.6 3.3 39 6-44 46-84 (144)
494 cd02040 NifH NifH gene encodes 20.3 1.7E+02 0.0037 27.0 4.7 37 8-44 3-39 (270)
495 COG3245 CycB Cytochrome c5 [En 20.3 73 0.0016 25.2 1.8 48 382-431 60-122 (126)
496 PRK14569 D-alanyl-alanine synt 20.3 2.2E+02 0.0048 26.8 5.6 37 6-42 3-43 (296)
497 KOG3062 RNA polymerase II elon 20.2 2E+02 0.0042 26.1 4.6 34 9-42 4-38 (281)
498 COG1515 Nfi Deoxyinosine 3'end 20.2 95 0.0021 27.6 2.7 39 99-137 84-129 (212)
499 PF03720 UDPG_MGDP_dh_C: UDP-g 20.1 1.3E+02 0.0027 23.4 3.2 22 21-42 17-38 (106)
500 COG4306 Uncharacterized protei 20.1 2.9E+02 0.0062 22.1 5.0 57 416-476 96-155 (160)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-64 Score=498.58 Aligned_cols=441 Identities=34% Similarity=0.603 Sum_probs=339.9
Q ss_pred CCCCC-CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCC
Q 011792 1 MEQTR-VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNP 79 (477)
Q Consensus 1 m~~~~-~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (477)
|+.+. +.||+++|++++||++|++.||+.|+.+|+.|||++++.+... . . ...+.+.+..+|+++|....
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~-~------~~~~~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--P-S------DDFTDFQFVTIPESLPESDF 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--c-c------cCCCCeEEEeCCCCCCcccc
Confidence 66333 6899999999999999999999999999999999999765421 1 0 11134899999988876432
Q ss_pred CCCCChHHHHHhhchhcHHHHHHHHhc----CCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhh
Q 011792 80 RFGIYTKDWFCSNKPVSKLAFRQLLMT----PGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLA 155 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (477)
... ....++..+...+.+.+.+++++ ...+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++...
T Consensus 72 ~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 72 KNL-GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred ccc-CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 222 23345555554556666666654 2336799999999999999999999999999999998877666543332
Q ss_pred hcCC-CCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhh
Q 011792 156 EEGE-LPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGS 234 (477)
Q Consensus 156 ~~~~-~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~ 234 (477)
.... .|..... ......+|+++. +...+++..... ........+ .......+++.+++|||.+||+..++..+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~iPg~~~-~~~~dlp~~~~~--~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 225 (451)
T PLN02410 151 ANNVLAPLKEPK-GQQNELVPEFHP-LRCKDFPVSHWA--SLESIMELY-RNTVDKRTASSVIINTASCLESSSLSRLQQ 225 (451)
T ss_pred hccCCCCccccc-cCccccCCCCCC-CChHHCcchhcC--CcHHHHHHH-HHHhhcccCCEEEEeChHHhhHHHHHHHHh
Confidence 2211 2322110 011224667665 666666643321 111122222 222234678899999999999999999987
Q ss_pred cC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHH
Q 011792 235 RL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIV 313 (477)
Q Consensus 235 ~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 313 (477)
.. ++++.|||++..+.. + ...++.++++.+||+.++.+++|||||||....+.+.+..++.+++
T Consensus 226 ~~~~~v~~vGpl~~~~~~----------~-----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 226 QLQIPVYPIGPLHLVASA----------P-----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred ccCCCEEEecccccccCC----------C-----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 55 689999999864321 0 1112334567899999888999999999999999999999999999
Q ss_pred hCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCc
Q 011792 314 NSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ 393 (477)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 393 (477)
.++.+|||+++.+...+..+...+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 291 ~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~ 370 (451)
T PLN02410 291 SSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPF 370 (451)
T ss_pred hcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccc
Confidence 99999999997432111111124799999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 394 VGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN-KRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 394 ~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
++||+.||+++++.+|+|+.+.+.+++++|+++|+++|.+ +++.|+++++++++.+++++++|||+..++++||+++.
T Consensus 371 ~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 371 SSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred cccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999987779999998789999999999999974 35689999999999999999999999999999999875
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.9e-64 Score=498.12 Aligned_cols=457 Identities=29% Similarity=0.518 Sum_probs=351.3
Q ss_pred CCCCC-CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcc-cc--cccCCCCeEEEeCCCCCCC
Q 011792 1 MEQTR-VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDV-TA--FYKHFPNFLCTSIPDGLPP 76 (477)
Q Consensus 1 m~~~~-~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~-~~--~~~~~~~~~~~~l~~~~~~ 76 (477)
|+++. +.||+++|+|++||++||+.||+.|+.+|..|||++++.+..++.+.... .. .....+.+.|..+|+++|.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 77555 79999999999999999999999999999999999998776665431100 00 0011233677778877765
Q ss_pred CCCCCCCChHHHHHhhchhcHHHHHHHHhcC---CCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhh
Q 011792 77 DNPRFGIYTKDWFCSNKPVSKLAFRQLLMTP---GRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSK 153 (477)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 153 (477)
+.. ...+...++..+.....+.+.++++.. ..+++|||+|.+..|+..+|+++|||.+.+++++++.+..+.+++.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 DDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred Ccc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 432 122444566666555677788888752 2234999999999999999999999999999999998877765521
Q ss_pred hhhcCCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhh
Q 011792 154 LAEEGELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLG 233 (477)
Q Consensus 154 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~ 233 (477)
...|............+|+++. +...+++.++............+.+......+++.+++|||.+||+..++..+
T Consensus 160 ----~~~~~~~~~~~~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 160 ----GLVPFPTETEPEIDVQLPCMPL-LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred ----cCCCcccccCCCceeecCCCCC-cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 2222111110111224788876 77888887654222233334445555566678899999999999999998887
Q ss_pred hcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHH
Q 011792 234 SRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIV 313 (477)
Q Consensus 234 ~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 313 (477)
...| ++.|||+....... -. +.+...++.++++.+||+.++.+++|||||||+...+.+.+..++.+++
T Consensus 235 ~~~~-v~~iGPl~~~~~~~--------~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~ 303 (480)
T PLN02555 235 KLCP-IKPVGPLFKMAKTP--------NS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVL 303 (480)
T ss_pred hCCC-EEEeCcccCccccc--------cc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHH
Confidence 6555 99999997542210 00 0001123445679999998888899999999999999999999999999
Q ss_pred hCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCc
Q 011792 314 NSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ 393 (477)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 393 (477)
..+.+|||+++.....+......+|+++.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|+
T Consensus 304 ~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~ 383 (480)
T PLN02555 304 NSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQ 383 (480)
T ss_pred hcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCC
Confidence 99999999997421100001124777888888899999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHhhhhceeeecc------CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 011792 394 VGDQQVNSRCVSEIWKIGFDMK------DTCDRSTIEKLVRDLMD-NKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKL 466 (477)
Q Consensus 394 ~~DQ~~na~rv~~~~G~G~~l~------~~~~~~~l~~~v~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 466 (477)
++||+.||.++++.+|+|+++. +.++.++|.++|++++. ++++++|+||++|++++++++++|||++.++++|
T Consensus 384 ~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~ 463 (480)
T PLN02555 384 WGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEF 463 (480)
T ss_pred ccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999999988789999993 36899999999999996 4568999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 011792 467 IEDIRLMA 474 (477)
Q Consensus 467 i~~~~~~~ 474 (477)
|+++..+.
T Consensus 464 v~~i~~~~ 471 (480)
T PLN02555 464 VDKLVRKS 471 (480)
T ss_pred HHHHHhcc
Confidence 99998763
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-63 Score=493.67 Aligned_cols=433 Identities=27% Similarity=0.456 Sum_probs=336.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
+.||+++|++++||++|++.||+.|+.+|++|||++++.+..++..... ..+.+.+..+|++++.+. ..++
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~------~~~~i~~v~lp~g~~~~~---~~~~ 76 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD------PKLGITFMSISDGQDDDP---PRDF 76 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC------CCCCEEEEECCCCCCCCc---cccH
Confidence 5799999999999999999999999999999999999887666544211 112489999998765421 1234
Q ss_pred HHHHHhhchhcHHHHHHHHhcCC--CCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCC
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPG--RLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVT 163 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~--~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (477)
..+...+...+.+.+++++++.. .+++|||+|.+..|+..+|+++|||++.++++++..+....+.+.....+..+..
T Consensus 77 ~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 77 FSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 44445555456778888887632 1458999999999999999999999999999988777665554433222222211
Q ss_pred C-CCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhh-----hcCC
Q 011792 164 D-ENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLG-----SRLT 237 (477)
Q Consensus 164 ~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~-----~~~p 237 (477)
. .........+|+++. +..++++.++............+.+.+....+++.+++|||.+||+..++... +..|
T Consensus 157 ~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 157 GCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred cccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 1 011111224677766 77778876654321122234555566666777899999999999998887554 4568
Q ss_pred ceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcc-cCCHHHHHHHHHHHHhCC
Q 011792 238 KIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFI-KLSGDQILEFWHGIVNSG 316 (477)
Q Consensus 238 ~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~ 316 (477)
+++.|||++..+... .. +...+..+.++.+||++++.+++|||||||+. ..+.++++.++.+++..+
T Consensus 236 ~v~~iGpl~~~~~~~--------~~----~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g 303 (448)
T PLN02562 236 QILQIGPLHNQEATT--------IT----KPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASG 303 (448)
T ss_pred CEEEecCcccccccc--------cC----CCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCC
Confidence 999999998643210 00 01112334567899998878899999999986 578999999999999999
Q ss_pred CcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccch
Q 011792 317 KGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGD 396 (477)
Q Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~D 396 (477)
.+|||+++.. +.+.+++++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 304 ~~fiW~~~~~------~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 377 (448)
T PLN02562 304 RPFIWVLNPV------WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGD 377 (448)
T ss_pred CCEEEEEcCC------chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccc
Confidence 9999999642 1125788888888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011792 397 QQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDI 470 (477)
Q Consensus 397 Q~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 470 (477)
|+.||+++++.+|+|+.+ +.++.++|.++|+++|.| ++|++||++++++++++ ++|||+++++++||+++
T Consensus 378 Q~~na~~~~~~~g~g~~~-~~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 378 QFVNCAYIVDVWKIGVRI-SGFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred hHHHHHHHHHHhCceeEe-CCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 999999997767999888 468999999999999998 89999999999999887 66799999999999986
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=9.2e-63 Score=486.78 Aligned_cols=441 Identities=24% Similarity=0.404 Sum_probs=333.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCccch-hccCCCcccccccCCCCeEEEeCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAG--FRITFVNTDQYHD-RLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFG 82 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (477)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. .+.. ... ......+.+.|..+|+..........
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~-~~~-~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDT-YVK-SIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHH-hhh-hccCCCCCeEEEEeCCCCCCCccccc
Confidence 47999999999999999999999999998 9999999976552 2211 000 00011235999999964321110112
Q ss_pred CChHHHHHhhchhc----HHHHHHHHhcC--CCC-CeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhh
Q 011792 83 IYTKDWFCSNKPVS----KLAFRQLLMTP--GRL-PTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLA 155 (477)
Q Consensus 83 ~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~-~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (477)
.+....+......+ .+.+.+++++. +.+ ++|||+|.+..|+..+|+++|||++.+++++++.+....+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 23343333333233 44566666542 113 499999999999999999999999999999998777665543321
Q ss_pred hcC-CCCCCCCCCCCCceecCCC-CCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhh
Q 011792 156 EEG-ELPVTDENFDKPVTCIPEL-ENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLG 233 (477)
Q Consensus 156 ~~~-~~p~~~~~~~~~~~~~~~l-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~ 233 (477)
... ..+.... .....+|++ +. +...+++.++.... . ...+.+......+++.+++|||++||++.++..+
T Consensus 161 ~~~~~~~~~~~---~~~~~vPgl~~~-l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 161 SKDTSVFVRNS---EEMLSIPGFVNP-VPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred ccccccCcCCC---CCeEECCCCCCC-CChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 110 0110000 122357887 45 78888887653211 1 3334455556678999999999999999988884
Q ss_pred --hcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHH
Q 011792 234 --SRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHG 311 (477)
Q Consensus 234 --~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 311 (477)
+..|+++.|||++..+.+ +.+ ......++++.+||++++++++|||||||....+.++++.++.+
T Consensus 233 ~~~~~p~v~~VGPl~~~~~~--------~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~ 299 (468)
T PLN02207 233 DEQNYPSVYAVGPIFDLKAQ--------PHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHG 299 (468)
T ss_pred hccCCCcEEEecCCcccccC--------CCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHH
Confidence 456899999999864321 122 11112345699999998888999999999999999999999999
Q ss_pred HHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 312 IVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 312 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
++.++.+|||+++.+.. ...+.+|+++.++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 300 l~~~~~~flW~~r~~~~---~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 300 LELCQYRFLWSLRTEEV---TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred HHHCCCcEEEEEeCCCc---cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 99999999999974321 012257889999899999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhHHHHhhhhceeeecc--------CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 011792 392 PQVGDQQVNSRCVSEIWKIGFDMK--------DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNL 463 (477)
Q Consensus 392 P~~~DQ~~na~rv~~~~G~G~~l~--------~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 463 (477)
|+++||+.||+++++.+|+|+++. +..+.++|.++|+++|.+++++||+||+++++++++++++|||+++++
T Consensus 377 P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l 456 (468)
T PLN02207 377 PMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAI 456 (468)
T ss_pred CccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999998877789999762 235999999999999984448999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011792 464 EKLIEDIRL 472 (477)
Q Consensus 464 ~~~i~~~~~ 472 (477)
++||++++.
T Consensus 457 ~~~v~~~~~ 465 (468)
T PLN02207 457 EKFIHDVIG 465 (468)
T ss_pred HHHHHHHHh
Confidence 999999864
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3e-62 Score=481.47 Aligned_cols=433 Identities=27% Similarity=0.502 Sum_probs=335.6
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPR 80 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (477)
|+.. +.||+++|++++||++|++.||+.|+.+|+.|||++++.+..++... ..+.+.+..+|+++|.....
T Consensus 1 ~~~~-~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--------~~~~i~~~~ipdglp~~~~~ 71 (449)
T PLN02173 1 MEKM-RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--------PSSPISIATISDGYDQGGFS 71 (449)
T ss_pred CCCC-CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--------CCCCEEEEEcCCCCCCcccc
Confidence 5543 58999999999999999999999999999999999998776655321 11249999999888863222
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcC--CCCC-eEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhc
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTP--GRLP-TCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEE 157 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (477)
...+...++..+...+.+.++++++.. ..+| ||||+|.+..|+..+|+.+|||.+.+++++++.+..+.+ ... ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~ 149 (449)
T PLN02173 72 SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NN 149 (449)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-cc
Confidence 233455677766666778888888762 1245 999999999999999999999999999988877644332 111 00
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCC
Q 011792 158 GELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLT 237 (477)
Q Consensus 158 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p 237 (477)
.. ....+++++. +...+++.++............+.+......+++.+++|||.+||+..++..+.. +
T Consensus 150 -------~~---~~~~~pg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~ 217 (449)
T PLN02173 150 -------GS---LTLPIKDLPL-LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-C 217 (449)
T ss_pred -------CC---ccCCCCCCCC-CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-C
Confidence 00 0011456665 6667777655432222223444555566678899999999999999999888764 4
Q ss_pred ceeEeCcccccc--ccccccccccCCCCccCcccCc--cccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHH
Q 011792 238 KIYTVGPLHALL--KSRIQEDSVESSPLESNNCVLS--KEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIV 313 (477)
Q Consensus 238 ~~~~vG~l~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 313 (477)
+++.|||++... .... .... ..+...| +.++++.+||+.++++++|||||||....+.+.+..++.++
T Consensus 218 ~v~~VGPl~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL- 289 (449)
T PLN02173 218 PVLTIGPTVPSMYLDQQI------KSDN-DYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI- 289 (449)
T ss_pred CeeEEcccCchhhccccc------cccc-cccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh-
Confidence 699999997421 0000 0000 0001122 23456899999988889999999999999999999999999
Q ss_pred hCCCcEEEEEecCCcCCCCCCCCCchhhHhhh-cCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCC
Q 011792 314 NSGKGFLWVIRSDLIDGESGVGPVPAELDQGT-KERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWP 392 (477)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 392 (477)
.+.+|+|+++.+.. ..+|+++.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 290 -s~~~flWvvr~~~~------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 290 -SNFSYLWVVRASEE------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred -cCCCEEEEEeccch------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC
Confidence 67789999974311 24777887776 57899999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHhhhhceeeecc-C----CCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 011792 393 QVGDQQVNSRCVSEIWKIGFDMK-D----TCDRSTIEKLVRDLMD-NKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKL 466 (477)
Q Consensus 393 ~~~DQ~~na~rv~~~~G~G~~l~-~----~~~~~~l~~~v~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 466 (477)
+++||+.||+++++.+|+|+.+. . .++.++|.++|+++|. ++++.+|+||+++++++++++++|||+..++++|
T Consensus 363 ~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~ 442 (449)
T PLN02173 363 QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTF 442 (449)
T ss_pred chhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999988779999885 2 2699999999999997 4457899999999999999999999999999999
Q ss_pred HHHHH
Q 011792 467 IEDIR 471 (477)
Q Consensus 467 i~~~~ 471 (477)
|+++.
T Consensus 443 v~~~~ 447 (449)
T PLN02173 443 VSKIQ 447 (449)
T ss_pred HHHhc
Confidence 99874
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.1e-62 Score=485.49 Aligned_cols=447 Identities=26% Similarity=0.434 Sum_probs=333.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCC--C--CCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIP--D--GLPPDNPRF 81 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--~--~~~~~~~~~ 81 (477)
++||+++|++++||++||+.||+.|+.+|+.|||++++.+..++..... ..+.+.+..+| + ++|.+....
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~------~~~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS------KHPSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc------cCCCeeEEeCCCCCcCCCCCCCcCh
Confidence 7999999999999999999999999999999999999988777654211 11236665543 1 333322110
Q ss_pred ---CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcC
Q 011792 82 ---GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEG 158 (477)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (477)
..+....+........+.+.+++.+...+++|||+|.+..|+..+|+.+|||++.|++++++.+..+.++...
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~---- 158 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE---- 158 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc----
Confidence 1111222333333456677777776434789999999999999999999999999999999988887754321
Q ss_pred CCCCCC--CCC--CCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhh
Q 011792 159 ELPVTD--ENF--DKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGS 234 (477)
Q Consensus 159 ~~p~~~--~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~ 234 (477)
.|... ... ......+|+++. +...+++.++............+.+.......++.+++|||.+||+..++..+.
T Consensus 159 -~~~~~~~~~~~~~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 159 -MPTKINPDDQNEILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred -ccccccccccccccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 12111 000 011224677766 777777765542222222333344444444567889999999999999999987
Q ss_pred cC--CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHH
Q 011792 235 RL--TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGI 312 (477)
Q Consensus 235 ~~--p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~ 312 (477)
.. ++++.|||++...... ... .+++...+..++++.+||+.++++++|||||||....+.+.+..++.++
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~-------~~~-~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL 308 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEK-------SGL-MERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGL 308 (477)
T ss_pred hcCCCCeEEeCCCccccccc-------ccc-cccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHH
Confidence 54 6899999997532100 000 0001111123457999999988889999999999999999999999999
Q ss_pred HhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhc-CCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 313 VNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTK-ERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 313 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
+.++.+|||+++.+... ......+|.++.++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 309 ~~~~~~flw~~~~~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 387 (477)
T PLN02863 309 EKSGVHFIWCVKEPVNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAW 387 (477)
T ss_pred HhCCCcEEEEECCCccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeC
Confidence 99999999999743211 0011246777766653 466677999999999999999999999999999999999999999
Q ss_pred CccchhhhhHHHHhhhhceeeecc----CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 011792 392 PQVGDQQVNSRCVSEIWKIGFDMK----DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLI 467 (477)
Q Consensus 392 P~~~DQ~~na~rv~~~~G~G~~l~----~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i 467 (477)
|++.||+.||+++++++|+|+++. ...+.++|.+++++++. ++++||+||+++++++++++++|||++.++++||
T Consensus 388 P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v 466 (477)
T PLN02863 388 PMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKDLDGFV 466 (477)
T ss_pred CccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 999999999999877789999994 24689999999999994 2389999999999999999999999999999999
Q ss_pred HHHHHhh
Q 011792 468 EDIRLMA 474 (477)
Q Consensus 468 ~~~~~~~ 474 (477)
+++...+
T Consensus 467 ~~i~~~~ 473 (477)
T PLN02863 467 KHVVELG 473 (477)
T ss_pred HHHHHhc
Confidence 9998654
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.8e-62 Score=482.45 Aligned_cols=436 Identities=28% Similarity=0.475 Sum_probs=332.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHH--HHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKL--FSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGI 83 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~--L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (477)
+.||+++|+|++||++|++.||+. |++||++|||++++.+.+++.. .. ...+.+.+..+|++++.... .
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~-~~-----~~~~~~~~~~~~~glp~~~~---~ 78 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLST-VE-----KPRRPVDLVFFSDGLPKDDP---R 78 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcc-cc-----CCCCceEEEECCCCCCCCcc---c
Confidence 689999999999999999999999 5699999999999988766533 11 11234788878877776431 2
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCC
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVT 163 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (477)
+...++..+.+.+.+.+.+++++. ++||||+|.+..|+..+|+++|||.+.+++.++..+....+.... ....+..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~~ 154 (456)
T PLN02210 79 APETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPDL 154 (456)
T ss_pred CHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCcc
Confidence 344566666666677888888765 799999999999999999999999999999988877665543211 1111211
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHH-HhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEe
Q 011792 164 DENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFI-RDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTV 242 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~v 242 (477)
. + ......+|+++. +...+++.++... ......... ........++.+++|||.+||+..++..+.. +++++|
T Consensus 155 ~-~-~~~~~~~Pgl~~-~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-~~v~~V 228 (456)
T PLN02210 155 E-D-LNQTVELPALPL-LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL-KPVIPI 228 (456)
T ss_pred c-c-cCCeeeCCCCCC-CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-CCEEEE
Confidence 0 0 011223666665 6677777654431 112122222 2223446678999999999999999988764 689999
Q ss_pred CccccccccccccccccCCC-CccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEE
Q 011792 243 GPLHALLKSRIQEDSVESSP-LESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLW 321 (477)
Q Consensus 243 G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 321 (477)
||++........ +.. ..+.+...|+.++++.+|++.++++++|||||||....+.++++.++.+++..+.+|||
T Consensus 229 GPl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 229 GPLVSPFLLGDD-----EEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred cccCchhhcCcc-----cccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 999742100000 000 00000123455677899999888889999999999999999999999999999999999
Q ss_pred EEecCCcCCCCCCCCCchhhHhhh-cCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhh
Q 011792 322 VIRSDLIDGESGVGPVPAELDQGT-KERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVN 400 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 400 (477)
+++..... ..+..+.++. +++..+++|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.|
T Consensus 304 ~~~~~~~~------~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~n 377 (456)
T PLN02210 304 VIRPKEKA------QNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPID 377 (456)
T ss_pred EEeCCccc------cchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHH
Confidence 99743111 2234455544 3777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhceeeecc-----CCCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 401 SRCVSEIWKIGFDMK-----DTCDRSTIEKLVRDLMDN-KRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 401 a~rv~~~~G~G~~l~-----~~~~~~~l~~~v~~ll~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
|+++++.+|+|+.+. +.+++++|.++|+++|.+ +|+++|+||++|++.+++++++|||++.++++||+++.
T Consensus 378 a~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 378 ARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999976689999995 258999999999999974 35679999999999999999999999999999999875
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-61 Score=485.36 Aligned_cols=437 Identities=32% Similarity=0.547 Sum_probs=337.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCC
Q 011792 5 RVPHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFG 82 (477)
Q Consensus 5 ~~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (477)
++.||+++|+|++||++|++.||++|++| ||+|||++++.+.+++..... .+.+.|..+|++.+.... ..
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-------~~gi~fv~lp~~~p~~~~-~~ 80 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-------PDNIRFATIPNVIPSELV-RA 80 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-------CCCEEEEECCCCCCCccc-cc
Confidence 37899999999999999999999999999 999999999888777655311 134999999976655321 22
Q ss_pred CChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCC
Q 011792 83 IYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPV 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (477)
.+...++..+.+.+.+.+++++++...++||||+|.++.|+..+|+++|||++.++++++..+....+++........|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 81 ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 34555666655557778888887743478999999999999999999999999999999877666555443222222222
Q ss_pred CCCC-CCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcC-Ccee
Q 011792 163 TDEN-FDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRL-TKIY 240 (477)
Q Consensus 163 ~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~-p~~~ 240 (477)
.... ......++|++.. +...+++.++.. ........+...+....+++.+++|||.+||+..++..+... ++++
T Consensus 161 ~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 161 ELSESGEERVDYIPGLSS-TRLSDLPPIFHG--NSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred ccccccCCccccCCCCCC-CChHHCchhhcC--CchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 2111 1111224666665 666677765432 122224445555555567789999999999999999988754 5899
Q ss_pred EeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEE
Q 011792 241 TVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFL 320 (477)
Q Consensus 241 ~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 320 (477)
.|||+....... ... .+....+.+.++.+|++.++.+++|||||||....+.+.++.++.+++..+.+||
T Consensus 238 ~iGP~~~~~~~~-------~~~---~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 238 PIGPSIPYMELK-------DNS---SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred EecCcccccccC-------CCc---cccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 999997532100 000 0000011234688999988888999999999988889999999999999999999
Q ss_pred EEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhh
Q 011792 321 WVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVN 400 (477)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 400 (477)
|+++.+ ..++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 308 w~~~~~-----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 308 WVARGE-----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred EEEcCc-----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 988532 123444445789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhceeeecc------CCCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 401 SRCVSEIWKIGFDMK------DTCDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 401 a~rv~~~~G~G~~l~------~~~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
|+++++.+|+|+.+. ...++++|+++|+++|.+ ++++||+|++++++++++++++|||+.+++++||+++.
T Consensus 377 a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~ 456 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDIS 456 (459)
T ss_pred HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999987678888884 247999999999999973 56799999999999999999999999999999999987
Q ss_pred Hh
Q 011792 472 LM 473 (477)
Q Consensus 472 ~~ 473 (477)
+.
T Consensus 457 ~~ 458 (459)
T PLN02448 457 QG 458 (459)
T ss_pred cc
Confidence 54
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.9e-61 Score=475.32 Aligned_cols=436 Identities=28% Similarity=0.458 Sum_probs=332.0
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCC----CCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPD----GLP 75 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~ 75 (477)
|+.+ +.||+++|++++||++|++.||+.|+ ++|++|||++++.+..++.+... ..+.+.+..+|. +++
T Consensus 1 ~~~~-~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~------~~~~i~~~~lp~p~~~glp 73 (481)
T PLN02992 1 MHIT-KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL------NSTGVDIVGLPSPDISGLV 73 (481)
T ss_pred CCCC-CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc------cCCCceEEECCCccccCCC
Confidence 7766 68999999999999999999999998 79999999999877655433111 112488888884 333
Q ss_pred CCCCCCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhh
Q 011792 76 PDNPRFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLA 155 (477)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (477)
... ......+........+.+++++++...+|+|||+|.+..|+..+|+++|||++.+++++++.+....+.+...
T Consensus 74 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 74 DPS----AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred CCC----ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 111 1222233333334667888888774447899999999999999999999999999999998776555443221
Q ss_pred hcCCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhc
Q 011792 156 EEGELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSR 235 (477)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~ 235 (477)
.....+.. .......+|+++. +...+++..+.. ........+.+......+++.+++|||.+||+..++..+..
T Consensus 150 ~~~~~~~~---~~~~~~~iPg~~~-l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~ 223 (481)
T PLN02992 150 KDIKEEHT---VQRKPLAMPGCEP-VRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDP 223 (481)
T ss_pred cccccccc---cCCCCcccCCCCc-cCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhc
Confidence 11000000 0011234677765 666677653322 11123445555556667899999999999999999888642
Q ss_pred -------CCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHH
Q 011792 236 -------LTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEF 308 (477)
Q Consensus 236 -------~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 308 (477)
-++++.|||+..... + . ..++++.+||+.++.+++|||||||....+.+.++.+
T Consensus 224 ~~~~~~~~~~v~~VGPl~~~~~-----------~-----~---~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 284 (481)
T PLN02992 224 KLLGRVARVPVYPIGPLCRPIQ-----------S-----S---KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTEL 284 (481)
T ss_pred cccccccCCceEEecCccCCcC-----------C-----C---cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHH
Confidence 256999999974211 0 1 1345588999988888999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCcCC--------------CCCCCCCchhhHhhhcCC-CceeeccCHHHHHhccccccccccc
Q 011792 309 WHGIVNSGKGFLWVIRSDLIDG--------------ESGVGPVPAELDQGTKER-GCIVSWAPQEEVLAHQAIGGFLTHS 373 (477)
Q Consensus 309 ~~a~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~n-v~~~~~~p~~~ll~~~~~~~~I~HG 373 (477)
+.+++.++.+|||+++.+...+ ......+|++|.++..++ +.+.+|+||.+||+|+++++|||||
T Consensus 285 a~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~ 364 (481)
T PLN02992 285 AWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHC 364 (481)
T ss_pred HHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecC
Confidence 9999999999999997431100 000124778888877664 4556999999999999999999999
Q ss_pred CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC---CCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHH
Q 011792 374 GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD---TCDRSTIEKLVRDLMD-NKRDKIMESTVQIAKMA 449 (477)
Q Consensus 374 G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~---~~~~~~l~~~v~~ll~-~~~~~~~~~a~~l~~~~ 449 (477)
||||++||+++|||||++|+++||+.||+++++++|+|+.+++ .++.++|.++|++++. ++++.++++++++++.+
T Consensus 365 G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 365 GWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTA 444 (481)
T ss_pred chhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999756999999973 5899999999999997 35679999999999999
Q ss_pred HHHHH--cCCChHHHHHHHHHHHHH
Q 011792 450 RDAVK--EGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 450 ~~~~~--~gg~~~~~~~~~i~~~~~ 472 (477)
+++++ +|||+..++++||+++.+
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHH
Confidence 99995 599999999999999865
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.3e-61 Score=473.34 Aligned_cols=435 Identities=28% Similarity=0.474 Sum_probs=330.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCcc-chhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSH-AGFRITFVNTDQY-HDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGI 83 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (477)
+.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+.... ...+.+.|..++++++.+......
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~------~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH------NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC------CCCCCEEEEEcCCCCCCccccccc
Confidence 469999999999999999999999996 7999999999754 22222210 111358999999888765322233
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcC---CCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCC
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTP---GRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGEL 160 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~---~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (477)
+...++..+...+.+.+.+++++. ..+++|||+|.+..|+..+|+.+|||++.+++++++.+..+.++...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~------ 150 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG------ 150 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc------
Confidence 444556666656778888888762 22459999999999999999999999999999999887776543210
Q ss_pred CCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhccc--CCceEEEcChhhhchHHHHHhhhcCCc
Q 011792 161 PVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATT--RTSALVINTFNEIEGPIISKLGSRLTK 238 (477)
Q Consensus 161 p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~le~p~l~~~~~~~p~ 238 (477)
. .....+|+++. +...+++.++............+.+...... .++.+++|||.+||+..++..+.. .
T Consensus 151 ---~----~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~ 220 (455)
T PLN02152 151 ---N----NSVFEFPNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNI--E 220 (455)
T ss_pred ---C----CCeeecCCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcC--C
Confidence 0 01224677766 7777887765432222222233333333222 246999999999999999888652 6
Q ss_pred eeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCc
Q 011792 239 IYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKG 318 (477)
Q Consensus 239 ~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 318 (477)
++.|||+........ ... .++...++.++++.+||+.++++++|||||||....+.+.++.++.+++.++.+
T Consensus 221 v~~VGPL~~~~~~~~------~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 221 MVAVGPLLPAEIFTG------SES--GKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred EEEEcccCccccccc------ccc--CccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 999999975321000 000 000011233457999999888889999999999999999999999999999999
Q ss_pred EEEEEecCCcCC---CCCC---CCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCC
Q 011792 319 FLWVIRSDLIDG---ESGV---GPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWP 392 (477)
Q Consensus 319 ~i~~~~~~~~~~---~~~~---~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 392 (477)
|||+++.+...+ .+.. -.+++++.++.++|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 293 flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 293 FLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred eEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc
Confidence 999997532110 0000 0246788888899999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHhhhhceeeecc---C-CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 011792 393 QVGDQQVNSRCVSEIWKIGFDMK---D-TCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIE 468 (477)
Q Consensus 393 ~~~DQ~~na~rv~~~~G~G~~l~---~-~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~ 468 (477)
+++||+.||+++++.+|+|+.+. . ..+.++|.++|+++|+|++.+||+|+++++++++++..+||++++++++||+
T Consensus 373 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~ 452 (455)
T PLN02152 373 MWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVK 452 (455)
T ss_pred ccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999987667776664 2 4699999999999998766779999999999999999999999999999999
Q ss_pred HH
Q 011792 469 DI 470 (477)
Q Consensus 469 ~~ 470 (477)
++
T Consensus 453 ~i 454 (455)
T PLN02152 453 TL 454 (455)
T ss_pred Hh
Confidence 86
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.7e-61 Score=482.23 Aligned_cols=444 Identities=27% Similarity=0.426 Sum_probs=332.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCccchhccC-CCccccccc--CCCCeEEEeCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAG--FRITFVNTDQYHDRLFG-NTDVTAFYK--HFPNFLCTSIPDGLPPDNPR 80 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~~~~~~~~~~l~~-~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 80 (477)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+..++.. .... .... ..+.+.+..+|++.+... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~~-~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYI-ASLSASSEDRLRYEVISAGDQPTT-E 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhh-hhcccCCCCCeEEEEcCCCCCCcc-c
Confidence 68999999999999999999999999998 88999999876543321 0000 0001 123499999987654221 1
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcC---CCC-CeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhh
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTP---GRL-PTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAE 156 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 156 (477)
...+..++..+.......+++++.+. ..+ .+|||+|.++.|+..+|+++|||++.|++++++.+..+.+.+....
T Consensus 80 -~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 80 -DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 11333344444444455556665431 113 3899999999999999999999999999999998887776544221
Q ss_pred cCCCCCCCCCCCCCceecCCCC-CCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhh-
Q 011792 157 EGELPVTDENFDKPVTCIPELE-NIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGS- 234 (477)
Q Consensus 157 ~~~~p~~~~~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~- 234 (477)
..-.+............+|++. . +...+++.++.. ......+.+....+..++.+++||+.+||+..+.....
T Consensus 159 ~~~~~~~~~~~~~~~v~iPgl~~p-l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 159 EKKYDVSELEDSEVELDVPSLTRP-YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred ccccCccccCCCCceeECCCCCCC-CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 1101101100001122467763 4 666677655432 12234445555666789999999999999998888775
Q ss_pred --cCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHH
Q 011792 235 --RLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGI 312 (477)
Q Consensus 235 --~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~ 312 (477)
..|+++.|||+....... .. . ..+.++++.+|++.++.+++|||||||+...+.+.++.++.++
T Consensus 234 ~~~~~~v~~vGpl~~~~~~~-------~~------~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l 299 (481)
T PLN02554 234 SGDLPPVYPVGPVLHLENSG-------DD------S-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIAL 299 (481)
T ss_pred ccCCCCEEEeCCCccccccc-------cc------c-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHH
Confidence 457899999995322110 00 0 0123457999999888889999999999889999999999999
Q ss_pred HhCCCcEEEEEecCCcC----CCC----CCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhc
Q 011792 313 VNSGKGFLWVIRSDLID----GES----GVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVA 384 (477)
Q Consensus 313 ~~~~~~~i~~~~~~~~~----~~~----~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~ 384 (477)
+.++.+|||+++.+... +.+ ....+|+++.++.++|+++++|+||.+||.|+++++|||||||||++||+++
T Consensus 300 ~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~ 379 (481)
T PLN02554 300 ERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWF 379 (481)
T ss_pred HHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHc
Confidence 99999999999753210 000 1113588898888999999999999999999999999999999999999999
Q ss_pred CCceecCCccchhhhhHHHHhhhhceeeecc------------CCCCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHH
Q 011792 385 GVPMICWPQVGDQQVNSRCVSEIWKIGFDMK------------DTCDRSTIEKLVRDLMD-NKRDKIMESTVQIAKMARD 451 (477)
Q Consensus 385 GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~------------~~~~~~~l~~~v~~ll~-~~~~~~~~~a~~l~~~~~~ 451 (477)
|||||++|+++||+.||+++++++|+|+.++ +.+++++|.++|+++|. | ++||+||+++++++++
T Consensus 380 GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~ 457 (481)
T PLN02554 380 GVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHV 457 (481)
T ss_pred CCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999966556799999985 25799999999999997 6 8999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHh
Q 011792 452 AVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 452 ~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
++++|||++.++++||+++...
T Consensus 458 av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 458 ALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999998753
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-60 Score=476.25 Aligned_cols=442 Identities=27% Similarity=0.447 Sum_probs=335.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC----CeEEEEeCCccch----hccCCCcccccccCCCCeEEEeCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAG----FRITFVNTDQYHD----RLFGNTDVTAFYKHFPNFLCTSIPDGLPPD 77 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rG----H~Vt~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (477)
+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. ++..... ........+.+..+|++.+..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVR--REAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHh--hcccCCCCEEEEECCCCCCCC
Confidence 57999999999999999999999999997 7999999865432 2222100 000001148999999664322
Q ss_pred CCCCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhc
Q 011792 78 NPRFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEE 157 (477)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 157 (477)
. ......++..+...+.+.+++++.+...+++|||+|.+..|+..+|+++|||++.|++++++.+..+.+++.....
T Consensus 81 ~---~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 81 D---AAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred c---cccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 1 1133345555555677888888887433569999999999999999999999999999999888777655432111
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhc--
Q 011792 158 GELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSR-- 235 (477)
Q Consensus 158 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~-- 235 (477)
.-.+... .. ....+|+++. +...+++.++.... ......+........+++.+++|||.+||+..++..+..
T Consensus 158 ~~~~~~~--~~-~~~~iPGlp~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 158 VAVEFEE--ME-GAVDVPGLPP-VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred ccCcccc--cC-cceecCCCCC-CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 0000011 01 1123677766 77778876554211 122334444455567789999999999999999998764
Q ss_pred -----CCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHH
Q 011792 236 -----LTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWH 310 (477)
Q Consensus 236 -----~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~ 310 (477)
.|+++.|||++..... + . .+..++++.+||+.++.+++|||||||+...+.+.+++++.
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~----------~-----~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~ 295 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFT----------P-----P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAA 295 (480)
T ss_pred cccCCCCceEEeCCCcccccc----------C-----C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHH
Confidence 2689999999843211 0 0 11345679999999888899999999998889999999999
Q ss_pred HHHhCCCcEEEEEecCCcCC------CCCCCCCchhhHhhhcCCCcee-eccCHHHHHhcccccccccccCchhHHHHhh
Q 011792 311 GIVNSGKGFLWVIRSDLIDG------ESGVGPVPAELDQGTKERGCIV-SWAPQEEVLAHQAIGGFLTHSGWNSTLESMV 383 (477)
Q Consensus 311 a~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~ 383 (477)
+++.++.+|||+++.+...+ .+....+|+++.++..+...++ +|+||.+||+|+++++|||||||||++||++
T Consensus 296 gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~ 375 (480)
T PLN00164 296 GLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLW 375 (480)
T ss_pred HHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHH
Confidence 99999999999997542210 0111236778877766655555 9999999999999999999999999999999
Q ss_pred cCCceecCCccchhhhhHHHHhhhhceeeecc-C-----CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHH
Q 011792 384 AGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-D-----TCDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVK 454 (477)
Q Consensus 384 ~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~-----~~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~ 454 (477)
+|||||++|+++||+.||.++++.+|+|+.+. . ..++++|.++|+++|.| +++.+|++|++|+++++++++
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~ 455 (480)
T PLN00164 376 HGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVE 455 (480)
T ss_pred cCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998877789999985 1 36999999999999974 478899999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhh
Q 011792 455 EGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 455 ~gg~~~~~~~~~i~~~~~~~ 474 (477)
+|||++.++++||+++...+
T Consensus 456 ~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 456 EGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred CCCcHHHHHHHHHHHHHhcc
Confidence 99999999999999997654
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-60 Score=471.28 Aligned_cols=450 Identities=30% Similarity=0.479 Sum_probs=329.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCC-----CCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIP-----DGLPPDNPR 80 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~ 80 (477)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..++...... ...... .+.|..+| +++|.+..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~-~~~~~~-~i~~~~lp~p~~~dglp~~~~- 84 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDR-ARESGL-PIRLVQIPFPCKEVGLPIGCE- 84 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhh-ccccCC-CeEEEEcCCCCccCCCCCCcc-
Confidence 47999999999999999999999999999999999998876665442110 000111 38888887 56765421
Q ss_pred CCC-----ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhh
Q 011792 81 FGI-----YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLA 155 (477)
Q Consensus 81 ~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (477)
... .....+........+.+.+++.+...+++|||+|.+..|+..+|+.+|||++.|++++++.+.....+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~- 163 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH- 163 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh-
Confidence 111 12222222223466788888876434789999999999999999999999999999988876654322110
Q ss_pred hcCCCCCCCCCCCCCceecCCCCC--CCCCCCCCccccCCCCCChHHHHHHHhhhc-ccCCceEEEcChhhhchHHHHHh
Q 011792 156 EEGELPVTDENFDKPVTCIPELEN--IFRNRDLPSICRHGGPDDPILQTFIRDTSA-TTRTSALVINTFNEIEGPIISKL 232 (477)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ns~~~le~p~l~~~ 232 (477)
....+... ......+|+++. .+...+++.++... .....+...+.. ...++.+++|||.+||+..++..
T Consensus 164 -~~~~~~~~---~~~~~~iPg~p~~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 164 -NAHLSVSS---DSEPFVVPGMPQSIEITRAQLPGAFVSL----PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred -cccccCCC---CCceeecCCCCccccccHHHCChhhcCc----ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 11111111 111223555542 14445565443211 112333333332 24577999999999999999998
Q ss_pred hhcC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHH
Q 011792 233 GSRL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHG 311 (477)
Q Consensus 233 ~~~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 311 (477)
+... ++++.|||+........ + ... ++.....+++++.+||+.++++++|||||||.....++....++.+
T Consensus 236 ~~~~~~~v~~VGPL~~~~~~~~--~---~~~---~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~g 307 (491)
T PLN02534 236 EKAIKKKVWCVGPVSLCNKRNL--D---KFE---RGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLG 307 (491)
T ss_pred HhhcCCcEEEECcccccccccc--c---ccc---cCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 7755 68999999975321100 0 000 0011011235689999998889999999999999999999999999
Q ss_pred HHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhh-cCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceec
Q 011792 312 IVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGT-KERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMIC 390 (477)
Q Consensus 312 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~ 390 (477)
++.++.+|||+++.+..........+|++|.++. +.++.+.+|+||..||+|+++++|||||||||++||+++|||||+
T Consensus 308 l~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 308 LEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred HHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 9999999999997431110000113577887663 567777899999999999999999999999999999999999999
Q ss_pred CCccchhhhhHHHHhhhhceeeecc-------------C-CCCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHH
Q 011792 391 WPQVGDQQVNSRCVSEIWKIGFDMK-------------D-TCDRSTIEKLVRDLMD---NKRDKIMESTVQIAKMARDAV 453 (477)
Q Consensus 391 ~P~~~DQ~~na~rv~~~~G~G~~l~-------------~-~~~~~~l~~~v~~ll~---~~~~~~~~~a~~l~~~~~~~~ 453 (477)
+|+++||+.||+++++.+|+|+++. . ..++++|.++|++++. ++|+++|+||++|++++++++
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av 467 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM 467 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 0 2789999999999995 567899999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHhhh
Q 011792 454 KEGGSSYRNLEKLIEDIRLMAF 475 (477)
Q Consensus 454 ~~gg~~~~~~~~~i~~~~~~~~ 475 (477)
++|||+++++++||+++..++.
T Consensus 468 ~~GGSS~~nl~~fv~~i~~~~~ 489 (491)
T PLN02534 468 ELGGSSHINLSILIQDVLKQQS 489 (491)
T ss_pred cCCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-59 Score=464.59 Aligned_cols=449 Identities=25% Similarity=0.400 Sum_probs=325.7
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCC----CCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIP----DGLPP 76 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~ 76 (477)
|....+.||+++|++++||++|++.||+.|+.||..|||++++.+..++..... ...+.+.+..+| +++|.
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-----~~~~~i~~~~lp~p~~dglp~ 75 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-----QLSSSITLVSFPLPSVPGLPS 75 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-----cCCCCeeEEECCCCccCCCCC
Confidence 443346899999999999999999999999999999999999887766643111 111248888887 56665
Q ss_pred CCCCCCCCh----HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhh
Q 011792 77 DNPRFGIYT----KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFS 152 (477)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (477)
+.. ...+. ..++....+.+.+.+++++++. +++|||+|.+..|+..+|+++|||++.++++++..+..+.+..
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 76 SAE-SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred Ccc-cccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhH
Confidence 422 11222 1244455555778888888775 7899999999999999999999999999999988776654322
Q ss_pred hhhhcCCCCCCCCCCCCCceecCCCCC-CCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHH
Q 011792 153 KLAEEGELPVTDENFDKPVTCIPELEN-IFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISK 231 (477)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~ 231 (477)
.....+..+...........++|.... .+...+++.++............+.+......+++.+++|||.+||+..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 153 SLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred hhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 111111111111111001112221111 1334566655432121212233344444445678899999999999999999
Q ss_pred hhhcC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHH
Q 011792 232 LGSRL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWH 310 (477)
Q Consensus 232 ~~~~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~ 310 (477)
.+... ++++.|||+........ +.. . ... ..++++.+|||+++++++|||||||....+.+.++.++.
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~~------~~~---~-~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~ 301 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDDE------EDD---T-IDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELAL 301 (472)
T ss_pred HHHhhCCCeEEEecCCccccccc------ccc---c-ccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 98754 68999999975311000 000 0 000 112568899998888899999999999999999999999
Q ss_pred HHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCce-eeccCHHHHHhcccccccccccCchhHHHHhhcCCcee
Q 011792 311 GIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCI-VSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMI 389 (477)
Q Consensus 311 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~-~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l 389 (477)
+++.++.+|||+++.+..........+|+++.++..++..+ .+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 302 gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 302 GLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred HHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 99999999999997532110011125788888877666555 59999999999999999999999999999999999999
Q ss_pred cCCccchhhhhHHHHhhhhceeeeccC-----CCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 011792 390 CWPQVGDQQVNSRCVSEIWKIGFDMKD-----TCDRSTIEKLVRDLMDN-KRDKIMESTVQIAKMARDAVKEGGSSYRNL 463 (477)
Q Consensus 390 ~~P~~~DQ~~na~rv~~~~G~G~~l~~-----~~~~~~l~~~v~~ll~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 463 (477)
++|++.||+.||+++++ +|+|+.+++ .++.++|.++|+++|.| +|++||+||+++++++++. +...+++
T Consensus 382 ~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~ 456 (472)
T PLN02670 382 LFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYV 456 (472)
T ss_pred eCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHH
Confidence 99999999999999964 899999962 38999999999999974 3558999999999999984 4556778
Q ss_pred HHHHHHHHHh
Q 011792 464 EKLIEDIRLM 473 (477)
Q Consensus 464 ~~~i~~~~~~ 473 (477)
+++++.+...
T Consensus 457 ~~~~~~l~~~ 466 (472)
T PLN02670 457 DELVHYLREN 466 (472)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.6e-59 Score=471.78 Aligned_cols=449 Identities=27% Similarity=0.497 Sum_probs=319.0
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCccccc---ccCC-CCeEEEeCC---CC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAF---YKHF-PNFLCTSIP---DG 73 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~l~---~~ 73 (477)
|.+. ++||+++|+|++||++|++.||+.|+.|||+|||++++.+.+.+.+. +. .. .... -.+.+..+| ++
T Consensus 1 ~~~~-~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~-~a-~~~~~~~~~~~~~~~~~~p~~~~g 77 (482)
T PLN03007 1 MNHE-KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKP-IE-AFKNLNPGLEIDIQIFNFPCVELG 77 (482)
T ss_pred CCCC-CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhh-hh-hhcccCCCCcceEEEeeCCCCcCC
Confidence 5554 68999999999999999999999999999999999998887666542 21 10 0110 135555565 34
Q ss_pred CCCCCCCC-------CCChHHHHHhhc---hhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchh
Q 011792 74 LPPDNPRF-------GIYTKDWFCSNK---PVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAY 143 (477)
Q Consensus 74 ~~~~~~~~-------~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 143 (477)
+|.+.... ......++..+. ....+.+.+++++. +|||||+|.++.|+..+|+++|||++.|++++++
T Consensus 78 lP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 78 LPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 55431100 001112222222 23455666666654 8999999999999999999999999999999987
Q ss_pred hHHHHhhhhhhhhcCCCCCCCCCCCCCceecCCCCC--CCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcCh
Q 011792 144 CSWSDFHFSKLAEEGELPVTDENFDKPVTCIPELEN--IFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTF 221 (477)
Q Consensus 144 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~ 221 (477)
.+.....+....+....+.. .....+++++. .+...+++.. .........+........+++.+++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~ 226 (482)
T PLN03007 156 SLCASYCIRVHKPQKKVASS-----SEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSF 226 (482)
T ss_pred HHHHHHHHHhcccccccCCC-----CceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECH
Confidence 76554433211111111100 01112444431 0222233221 1112222333333344677889999999
Q ss_pred hhhchHHHHHhhhcC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccC
Q 011792 222 NEIEGPIISKLGSRL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKL 300 (477)
Q Consensus 222 ~~le~p~l~~~~~~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~ 300 (477)
++||++.++.+++.. +.+++|||+.....+....+ ..+ ...+..++++.+|++.++++++|||||||+...
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~---~~~-----~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~ 298 (482)
T PLN03007 227 YELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKA---ERG-----KKANIDEQECLKWLDSKKPDSVIYLSFGSVASF 298 (482)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcccccccccccccc---ccC-----CccccchhHHHHHHhcCCCCceEEEeecCCcCC
Confidence 999999888887755 47999999865432100000 001 112223466899999888899999999999988
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhh-cCCCceeeccCHHHHHhcccccccccccCchhHH
Q 011792 301 SGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGT-KERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTL 379 (477)
Q Consensus 301 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~ 379 (477)
+.+.+..++.+++.++.+|||+++.+.... .....+|+++.++. +.|+++.+|+||.+||+|+++++|||||||||++
T Consensus 299 ~~~~~~~~~~~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~ 377 (482)
T PLN03007 299 KNEQLFEIAAGLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLL 377 (482)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHH
Confidence 889999999999999999999997532110 00124677777664 5678888999999999999999999999999999
Q ss_pred HHhhcCCceecCCccchhhhhHHHHhhhhceeeec--------c-CCCCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHH
Q 011792 380 ESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDM--------K-DTCDRSTIEKLVRDLMDN-KRDKIMESTVQIAKMA 449 (477)
Q Consensus 380 eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l--------~-~~~~~~~l~~~v~~ll~~-~~~~~~~~a~~l~~~~ 449 (477)
||+++|||||++|+++||+.||+++++.+++|+.+ + ..+++++|.++|++++.| ++++||+|++++++++
T Consensus 378 Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a 457 (482)
T PLN03007 378 EGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMA 457 (482)
T ss_pred HHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887655555554 3 358999999999999985 3459999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHH
Q 011792 450 RDAVKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 450 ~~~~~~gg~~~~~~~~~i~~~~~ 472 (477)
++++++|||+++++++||+++..
T Consensus 458 ~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 458 KAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 16
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.6e-59 Score=458.50 Aligned_cols=439 Identities=23% Similarity=0.378 Sum_probs=330.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHA-GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (477)
+.||+++|++++||++|++.||+.|+.+ |..|||+++..+...+...... ......+.+.+..+|.....+-.....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAI-HAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccc-ccccCCCceEEEECCCCccccCCCCCcc
Confidence 4699999999999999999999999977 9999999887655444211100 0000112488999985332110000013
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCC-eEEEccCchhhHHHHhhhhhhhhcCCCCCC
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIP-IITFRPYSAYCSWSDFHFSKLAEEGELPVT 163 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (477)
....+....+...+.+++++++...+++|||+|.+..|+..+|+++||| .+.++++.++.+..+.+.+.... ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~~~~ 159 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VVEGE 159 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--ccccc
Confidence 3333333444577888999987544789999999999999999999999 57777777766655555443211 11110
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhc-------C
Q 011792 164 DENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSR-------L 236 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~-------~ 236 (477)
..... ....+|+++. +...+++..+.... ......+.+......+++.+++|||.+||+..++..+.. -
T Consensus 160 ~~~~~-~~~~vPg~p~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~ 235 (470)
T PLN03015 160 YVDIK-EPLKIPGCKP-VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK 235 (470)
T ss_pred cCCCC-CeeeCCCCCC-CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC
Confidence 00111 1234788876 78888876543211 222344445555578899999999999999999888764 1
Q ss_pred CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCC
Q 011792 237 TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSG 316 (477)
Q Consensus 237 p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 316 (477)
+.++.|||+.... .. . +.++++.+|||.++.+++|||||||....+.+..+.++.+++.++
T Consensus 236 ~~v~~VGPl~~~~-----------~~-----~---~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 236 VPVYPIGPIVRTN-----------VH-----V---EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred CceEEecCCCCCc-----------cc-----c---cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 5699999998421 11 1 123469999999888999999999999999999999999999999
Q ss_pred CcEEEEEecCCcC-------CCCCCCCCchhhHhhhcCCCc-eeeccCHHHHHhcccccccccccCchhHHHHhhcCCce
Q 011792 317 KGFLWVIRSDLID-------GESGVGPVPAELDQGTKERGC-IVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPM 388 (477)
Q Consensus 317 ~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~nv~-~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~ 388 (477)
.+|||+++.+... .....+.+|+++.++..+... +.+|+||.+||+|+++++|||||||||++|++++||||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~ 376 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPI 376 (470)
T ss_pred CcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCE
Confidence 9999999743210 000112477888887766665 45999999999999999999999999999999999999
Q ss_pred ecCCccchhhhhHHHHhhhhceeeecc-----CCCCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHHcCCChH
Q 011792 389 ICWPQVGDQQVNSRCVSEIWKIGFDMK-----DTCDRSTIEKLVRDLMD---NKRDKIMESTVQIAKMARDAVKEGGSSY 460 (477)
Q Consensus 389 l~~P~~~DQ~~na~rv~~~~G~G~~l~-----~~~~~~~l~~~v~~ll~---~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 460 (477)
|++|++.||+.||+++++.+|+|+++. +..+.++|.++|++++. ++|+++|+||+++++++++++++|||++
T Consensus 377 v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~ 456 (470)
T PLN03015 377 VAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSY 456 (470)
T ss_pred EecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999999988899999994 26899999999999994 5678999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011792 461 RNLEKLIEDI 470 (477)
Q Consensus 461 ~~~~~~i~~~ 470 (477)
+++++||+++
T Consensus 457 ~nl~~~~~~~ 466 (470)
T PLN03015 457 NSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-59 Score=470.75 Aligned_cols=447 Identities=25% Similarity=0.378 Sum_probs=321.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC---CeEEEEeCCccch-hccCCCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAG---FRITFVNTDQYHD-RLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF 81 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rG---H~Vt~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (477)
+.||+++|++++||++||+.||+.|+.+| +.||++++..... .... ... ......+.+.|..+|++........
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~-~~~-~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADA-FLK-SLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhH-HHh-hcccCCCCeEEEECCCCCCCccccc
Confidence 47999999999999999999999999998 3567766543221 1100 000 0001123599999986542111000
Q ss_pred -CCChHHHHHhhchhcHHHHHHHHhcC-------CC-CCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhh
Q 011792 82 -GIYTKDWFCSNKPVSKLAFRQLLMTP-------GR-LPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFS 152 (477)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (477)
.......+..+...+.+.+.+.+++. .. +++|||+|.+..|+..+|+++|||++.|++++++.+..+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11111222223333444444444331 11 3599999999999999999999999999999998877666544
Q ss_pred hhhhcCCCCCCCCCCCCCceecCCCC-CCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHH
Q 011792 153 KLAEEGELPVTDENFDKPVTCIPELE-NIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISK 231 (477)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~ 231 (477)
................ ....+|+++ . +...+++...... .....+.+.+....+++.+++|||.+||+..++.
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~iPgl~~~-l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 161 ERHRKTASEFDLSSGE-EELPIPGFVNS-VPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HhccccccccccCCCC-CeeECCCCCCC-CChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 3211100000000001 122367763 3 5666666543221 1123344555556778999999999999999988
Q ss_pred hhhc---CCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHH
Q 011792 232 LGSR---LTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEF 308 (477)
Q Consensus 232 ~~~~---~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 308 (477)
.+.. .|+++.|||++........ .++ ...+.++.+||+.++.+++|||||||+...+...+..+
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~~~~-----~~~--------~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~el 301 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDRTSP-----NLD--------SSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEI 301 (475)
T ss_pred HHhhcccCCeeEEeccccccccccCC-----CCC--------cchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHH
Confidence 8653 4789999999864321000 011 12235699999988888999999999988899999999
Q ss_pred HHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCce
Q 011792 309 WHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPM 388 (477)
Q Consensus 309 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~ 388 (477)
+.+++.++.+|||+++.+..........+|+++.++..+++++++|+||.+||+|+++++|||||||||++||+++||||
T Consensus 302 a~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~ 381 (475)
T PLN02167 302 AQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPI 381 (475)
T ss_pred HHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCE
Confidence 99999999999999975311100111247888888877788889999999999999999999999999999999999999
Q ss_pred ecCCccchhhhhHHHHhhhhceeeecc-C-------CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChH
Q 011792 389 ICWPQVGDQQVNSRCVSEIWKIGFDMK-D-------TCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSY 460 (477)
Q Consensus 389 l~~P~~~DQ~~na~rv~~~~G~G~~l~-~-------~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 460 (477)
|++|+++||+.||+++++.+|+|+.+. . .+++++|.++|+++|.++ +.|++|++++++.+++++++|||+.
T Consensus 382 l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 382 ATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred EeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999987556799999885 1 469999999999999852 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 011792 461 RNLEKLIEDIRLMA 474 (477)
Q Consensus 461 ~~~~~~i~~~~~~~ 474 (477)
.++++||+++..++
T Consensus 461 ~~l~~~v~~i~~~~ 474 (475)
T PLN02167 461 VAVKRFIDDLLGDH 474 (475)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-59 Score=462.28 Aligned_cols=431 Identities=27% Similarity=0.455 Sum_probs=319.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEE--EeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCC-C
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAG--FRITF--VNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNP-R 80 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 80 (477)
+.||+++|++++||++||+.||+.|+.+| +.||+ +++..+...+..... ......+.+.+..+|++.+.... .
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS--SVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc--cccCCCCCeEEEEcCCCCCCCCccc
Confidence 46999999999999999999999999998 45655 444332222221000 00011235999999976542111 1
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcC--CCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcC
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTP--GRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEG 158 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (477)
........+......+.+.+.+++++. ..+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~-- 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE-- 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc--
Confidence 112223333333345666777777763 2245999999999999999999999999999999988877766443211
Q ss_pred CCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhc--C
Q 011792 159 ELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSR--L 236 (477)
Q Consensus 159 ~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~--~ 236 (477)
..|..... ......+|+++. +...+++.++.... ......+......+.+++.+++|||.+||+..++..+.. .
T Consensus 159 ~~~~~~~~-~~~~v~iPg~p~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~ 234 (451)
T PLN03004 159 TTPGKNLK-DIPTVHIPGVPP-MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCF 234 (451)
T ss_pred cccccccc-cCCeecCCCCCC-CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCC
Confidence 11110000 011234677776 77788887654321 223344455555667788999999999999999998765 2
Q ss_pred CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCC
Q 011792 237 TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSG 316 (477)
Q Consensus 237 p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 316 (477)
++++.|||+...+. .. ++ . . ..+.++.+||+.++++++|||||||....+.+.++.++.+++.++
T Consensus 235 ~~v~~vGPl~~~~~----------~~--~~-~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~ 299 (451)
T PLN03004 235 RNIYPIGPLIVNGR----------IE--DR-N-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSG 299 (451)
T ss_pred CCEEEEeeeccCcc----------cc--cc-c-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCC
Confidence 68999999984321 11 00 1 1 123568999999888999999999999999999999999999999
Q ss_pred CcEEEEEecCCcCCC---CCCCCCchhhHhhhcC-CCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCC
Q 011792 317 KGFLWVIRSDLIDGE---SGVGPVPAELDQGTKE-RGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWP 392 (477)
Q Consensus 317 ~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~-nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 392 (477)
.+|||+++.+...+. .....+|++|.++..+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 300 ~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P 379 (451)
T PLN03004 300 QRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP 379 (451)
T ss_pred CCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc
Confidence 999999985311000 0011378888887765 667779999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHhhhhceeeecc-C---CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHH
Q 011792 393 QVGDQQVNSRCVSEIWKIGFDMK-D---TCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYR 461 (477)
Q Consensus 393 ~~~DQ~~na~rv~~~~G~G~~l~-~---~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 461 (477)
++.||+.||+++++++|+|++++ . ..++++|.++|+++++| ++|++|+++++++.+.++++|||+++
T Consensus 380 ~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 380 LYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred ccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999977689999996 2 47999999999999998 89999999999999999999999854
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-58 Score=452.59 Aligned_cols=429 Identities=22% Similarity=0.347 Sum_probs=320.1
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCC--CCCCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIP--DGLPPDN 78 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 78 (477)
|.+. ++||+++|++++||++|++.||+.|+.+|+.|||++++.+..++..... ......+.+..+| +++|.+.
T Consensus 1 ~~~~-~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~----~~~~~~v~~~~~p~~~glp~g~ 75 (453)
T PLN02764 1 MGGL-KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNL----FPHNIVFRSVTVPHVDGLPVGT 75 (453)
T ss_pred CCCC-CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccccc----CCCCceEEEEECCCcCCCCCcc
Confidence 6666 6999999999999999999999999999999999999877655543100 0001126777777 5666542
Q ss_pred CCCC---C-ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhh
Q 011792 79 PRFG---I-YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKL 154 (477)
Q Consensus 79 ~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 154 (477)
. .. . .....+........+.+.+++++. ++||||+|. ..|+..+|+.+|||.+.+++++++.+..... +
T Consensus 76 e-~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~-- 148 (453)
T PLN02764 76 E-TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P-- 148 (453)
T ss_pred c-ccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c--
Confidence 1 11 1 111223333334567888888775 789999995 7899999999999999999999977665532 1
Q ss_pred hhcCCCCCCCCCCCCCceecCCCCC---CCCCCCCCcccc--CCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHH
Q 011792 155 AEEGELPVTDENFDKPVTCIPELEN---IFRNRDLPSICR--HGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPII 229 (477)
Q Consensus 155 ~~~~~~p~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l 229 (477)
....+ .. .++++. .+...+++.+.. ....................+++.+++|||.+||+.++
T Consensus 149 --~~~~~-------~~---~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~ 216 (453)
T PLN02764 149 --GGELG-------VP---PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFC 216 (453)
T ss_pred --cccCC-------CC---CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHH
Confidence 01110 00 133331 023334433211 00111112222222224457788999999999999999
Q ss_pred HHhhhcC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHH
Q 011792 230 SKLGSRL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEF 308 (477)
Q Consensus 230 ~~~~~~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 308 (477)
+..+... ++++.|||+...+.. . ...++++.+|||.++++++|||||||....+.+.+..+
T Consensus 217 ~~~~~~~~~~v~~VGPL~~~~~~----------------~--~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~el 278 (453)
T PLN02764 217 DYIEKHCRKKVLLTGPVFPEPDK----------------T--RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQEL 278 (453)
T ss_pred HHHHhhcCCcEEEeccCccCccc----------------c--ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHH
Confidence 9997753 679999999753210 0 01245689999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCcee-eccCHHHHHhcccccccccccCchhHHHHhhcCCc
Q 011792 309 WHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIV-SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVP 387 (477)
Q Consensus 309 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP 387 (477)
..+|+..+.+|+|+++.+.... .....+|++|.++..++..++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 279 a~gL~~s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP 357 (453)
T PLN02764 279 CLGMELTGSPFLVAVKPPRGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQ 357 (453)
T ss_pred HHHHHhCCCCeEEEEeCCCCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCC
Confidence 9999999999999998532110 011258889988876666555 99999999999999999999999999999999999
Q ss_pred eecCCccchhhhhHHHHhhhhceeeecc-C---CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHcCCChH
Q 011792 388 MICWPQVGDQQVNSRCVSEIWKIGFDMK-D---TCDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVKEGGSSY 460 (477)
Q Consensus 388 ~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~---~~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~ 460 (477)
||++|++.||+.||+++++.+|+|+.+. + .++.++|.++|+++|++ +++++|++++++++++++ |||+.
T Consensus 358 ~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~ 433 (453)
T PLN02764 358 IVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLT 433 (453)
T ss_pred EEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHH
Confidence 9999999999999999977789999985 2 58999999999999974 356799999999999965 89999
Q ss_pred HHHHHHHHHHHHhhhc
Q 011792 461 RNLEKLIEDIRLMAFK 476 (477)
Q Consensus 461 ~~~~~~i~~~~~~~~~ 476 (477)
.++++||+++.....|
T Consensus 434 ~~l~~lv~~~~~~~~~ 449 (453)
T PLN02764 434 GYVDNFIESLQDLVSG 449 (453)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887665
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-58 Score=455.33 Aligned_cols=418 Identities=20% Similarity=0.349 Sum_probs=311.3
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeC--C--CCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSI--P--DGLPP 76 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~--~~~~~ 76 (477)
|+. ++||+++|++++||++|++.||+.|+++||+|||++++.+...+..... ..+.+.+..+ + ++++.
T Consensus 1 ~~~--~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a------~~~~i~~~~l~~p~~dgLp~ 72 (442)
T PLN02208 1 MEP--KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL------FPDSIVFHPLTIPPVNGLPA 72 (442)
T ss_pred CCC--CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC------CCCceEEEEeCCCCccCCCC
Confidence 665 6899999999999999999999999999999999999877766544211 0112555544 3 45554
Q ss_pred CCCCCCCCh----HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhh
Q 011792 77 DNPRFGIYT----KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFS 152 (477)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (477)
+.. ...++ ..++........+.+++++++. ++||||+| ++.|+..+|+.+|||++.++++++..+. +.+.+
T Consensus 73 g~~-~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 73 GAE-TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred Ccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 421 11122 2223333445667788888765 88999999 5789999999999999999999887543 33221
Q ss_pred hhhhcCCCCCCCCCCCCCceecCCCCC---CCCCCCCCccccCCCCCChHHHHHHHhh-hcccCCceEEEcChhhhchHH
Q 011792 153 KLAEEGELPVTDENFDKPVTCIPELEN---IFRNRDLPSICRHGGPDDPILQTFIRDT-SATTRTSALVINTFNEIEGPI 228 (477)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ns~~~le~p~ 228 (477)
. ...+ .. .++++. .+...+++.+ . ........+.+.. ....+++.+++|||.+||+.+
T Consensus 148 ~----~~~~-------~~---~pglp~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 148 G----GKLG-------VP---PPGYPSSKVLFRENDAHAL-A---TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred c----cccC-------CC---CCCCCCcccccCHHHcCcc-c---ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 1 0000 00 234432 1334444432 1 1112233333322 345678999999999999999
Q ss_pred HHHhhhc-CCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHH
Q 011792 229 ISKLGSR-LTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILE 307 (477)
Q Consensus 229 l~~~~~~-~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~ 307 (477)
++..+.. .|+++.|||++..+.. + ...++++.+|||.++++++|||||||....+.+.+..
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~----------~--------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e 271 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDT----------S--------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQE 271 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCC----------C--------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHH
Confidence 9888654 4899999999864320 0 0234568999998888899999999999889998999
Q ss_pred HHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcC-CCceeeccCHHHHHhcccccccccccCchhHHHHhhcCC
Q 011792 308 FWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKE-RGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGV 386 (477)
Q Consensus 308 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~Gv 386 (477)
++.+++..+.+++|+++.+...+ .....+|++|.++..+ |+.+.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 272 ~~~~l~~s~~pf~wv~r~~~~~~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GV 350 (442)
T PLN02208 272 LCLGMELTGLPFLIAVKPPRGSS-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDC 350 (442)
T ss_pred HHHHHHhCCCcEEEEEeCCCccc-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCC
Confidence 99988888999999997531110 0112578888877644 666669999999999999999999999999999999999
Q ss_pred ceecCCccchhhhhHHHHhhhhceeeeccC-C---CCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHcCCCh
Q 011792 387 PMICWPQVGDQQVNSRCVSEIWKIGFDMKD-T---CDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVKEGGSS 459 (477)
Q Consensus 387 P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~-~---~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~~ 459 (477)
|||++|+++||+.||+++++.+|+|+.+++ + +++++|.++|++++++ +++++|++++++++.+.+ +||+
T Consensus 351 P~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS 426 (442)
T PLN02208 351 QMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLL 426 (442)
T ss_pred CEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcH
Confidence 999999999999999988777999999973 3 8999999999999963 367799999999999854 7899
Q ss_pred HHHHHHHHHHHHH
Q 011792 460 YRNLEKLIEDIRL 472 (477)
Q Consensus 460 ~~~~~~~i~~~~~ 472 (477)
..++++||+++..
T Consensus 427 ~~~l~~~v~~l~~ 439 (442)
T PLN02208 427 TGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999854
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-57 Score=448.12 Aligned_cols=420 Identities=21% Similarity=0.329 Sum_probs=311.0
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeC--C--CCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSI--P--DGLPP 76 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~--~~~~~ 76 (477)
|.+ +.||+++|++++||++|++.||+.|+.+|++|||++++.+..++..... ..+.+.|..+ | +++|.
T Consensus 1 ~~~--~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~------~~~~i~~~~i~lP~~dGLP~ 72 (446)
T PLN00414 1 MGS--KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL------FPDSIVFEPLTLPPVDGLPF 72 (446)
T ss_pred CCC--CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc------CCCceEEEEecCCCcCCCCC
Confidence 554 6899999999999999999999999999999999999877666544211 1123677444 3 45655
Q ss_pred CCCCCCCCh----HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhh
Q 011792 77 DNPRFGIYT----KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFS 152 (477)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 152 (477)
+.. ...++ ...+........+.+++++... +|||||+|. +.|+..+|+.+|||++.|+++++..+....+ +
T Consensus 73 g~e-~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~ 147 (446)
T PLN00414 73 GAE-TASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-P 147 (446)
T ss_pred ccc-ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-c
Confidence 421 11122 2223333334566777777654 789999995 7899999999999999999999987766553 1
Q ss_pred hhhhcCCCCCCCCCCCCCceecCCCCCC---CCCCC--CCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchH
Q 011792 153 KLAEEGELPVTDENFDKPVTCIPELENI---FRNRD--LPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGP 227 (477)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~---~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p 227 (477)
. ..... ..++++.. +...+ ++.++.. ....+.+......+++.+++|||.+||+.
T Consensus 148 ~-~~~~~-------------~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 148 R-AELGF-------------PPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred H-hhcCC-------------CCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 1 00000 01222210 11111 1111110 11233334445577899999999999999
Q ss_pred HHHHhhhcC-CceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHH
Q 011792 228 IISKLGSRL-TKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQIL 306 (477)
Q Consensus 228 ~l~~~~~~~-p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 306 (477)
.++..+... +.++.|||+..... . . .. ...++++.+|||.++++++|||||||....+.+.+.
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~---------~-~-----~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~ 271 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQ---------N-K-----SG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQ 271 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCcc---------c-c-----cC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 999988754 57999999975321 0 0 00 012345889999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCcee-eccCHHHHHhcccccccccccCchhHHHHhhcC
Q 011792 307 EFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIV-SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAG 385 (477)
Q Consensus 307 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~G 385 (477)
.+..+|+..+.+|+|+++.+...+ ...+.+|++|.++..++..++ +|+||..||+|+++++|||||||||++||+++|
T Consensus 272 e~a~gL~~s~~~Flwvvr~~~~~~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~G 350 (446)
T PLN00414 272 EFCLGMELTGLPFLIAVMPPKGSS-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSD 350 (446)
T ss_pred HHHHHHHHcCCCeEEEEecCCCcc-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcC
Confidence 999999999999999997642210 012258899999888877766 999999999999999999999999999999999
Q ss_pred CceecCCccchhhhhHHHHhhhhceeeeccC----CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHcCCC
Q 011792 386 VPMICWPQVGDQQVNSRCVSEIWKIGFDMKD----TCDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVKEGGS 458 (477)
Q Consensus 386 vP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~----~~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~ 458 (477)
||||++|++.||+.||+++++++|+|+++.+ .+++++|.++++++|.| +++++|++++++++.+.+. ||+
T Consensus 351 vP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~ 427 (446)
T PLN00414 351 CQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLL 427 (446)
T ss_pred CCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCc
Confidence 9999999999999999999877999999962 48999999999999963 3567999999999998554 773
Q ss_pred hHHHHHHHHHHHHHhh
Q 011792 459 SYRNLEKLIEDIRLMA 474 (477)
Q Consensus 459 ~~~~~~~~i~~~~~~~ 474 (477)
+ ..+++||+++....
T Consensus 428 s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 428 S-GYADKFVEALENEV 442 (446)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 3 34899999986543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.4e-54 Score=432.27 Aligned_cols=412 Identities=15% Similarity=0.171 Sum_probs=297.3
Q ss_pred CEEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCC-------CC
Q 011792 7 PHVVLL-PFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPP-------DN 78 (477)
Q Consensus 7 ~~il~~-~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 78 (477)
.||+++ |.++.||+..+.+|+++|++|||+||++++.... .... ....++..+.++...+. ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS--------HLCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc--------CCCCCEEEEEcCCChHHHHHHHhhhh
Confidence 578765 8899999999999999999999999999874311 1000 01123544444311000 00
Q ss_pred CC----CCCCh----HHHHHhhchhc-----HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEccCchhh
Q 011792 79 PR----FGIYT----KDWFCSNKPVS-----KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEEL-NIPIITFRPYSAYC 144 (477)
Q Consensus 79 ~~----~~~~~----~~~~~~~~~~~-----~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~ 144 (477)
.. ...+. ...+..+...| .+.+.++++..+.+||+||+|.+..|+..+|+++ ++|.|.++++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 00 00000 00111112112 4455677763233899999999888999999999 99999888866654
Q ss_pred HHHHhhhh-hhhhcCCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCC--CCCChHHHHHHH-----hhhcccCCceE
Q 011792 145 SWSDFHFS-KLAEEGELPVTDENFDKPVTCIPELENIFRNRDLPSICRHG--GPDDPILQTFIR-----DTSATTRTSAL 216 (477)
Q Consensus 145 ~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~ 216 (477)
..... .+ .|.+++|+|...+.+.++|++++|+.| +.......+.... ...+...+..+. ..+...+.+++
T Consensus 172 ~~~~~-~gg~p~~~syvP~~~~~~~~~Msf~~R~~N-~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~ 249 (507)
T PHA03392 172 ENFET-MGAVSRHPVYYPNLWRSKFGNLNVWETINE-IYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLL 249 (507)
T ss_pred hHHHh-hccCCCCCeeeCCcccCCCCCCCHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEE
Confidence 33332 45 788899999999999999999999988 3211100000000 001111111111 11223667899
Q ss_pred EEcChhhhchHHHHHhhhcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecC
Q 011792 217 VINTFNEIEGPIISKLGSRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGS 296 (477)
Q Consensus 217 l~ns~~~le~p~l~~~~~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs 296 (477)
++|+.+.+++| +|.+|++++|||++.++.+. ...++++.+|++.. ++++|||||||
T Consensus 250 lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~~~------------------~~l~~~l~~fl~~~-~~g~V~vS~GS 305 (507)
T PHA03392 250 FVNVHPVFDNN-----RPVPPSVQYLGGLHLHKKPP------------------QPLDDYLEEFLNNS-TNGVVYVSFGS 305 (507)
T ss_pred EEecCccccCC-----CCCCCCeeeecccccCCCCC------------------CCCCHHHHHHHhcC-CCcEEEEECCC
Confidence 99998887776 89999999999998753210 13456688899854 55899999999
Q ss_pred ccc---CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhccccccccccc
Q 011792 297 FIK---LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHS 373 (477)
Q Consensus 297 ~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HG 373 (477)
+.. .+.++++.+++++++.+.++||+++.+ ..+ ...|+|+++.+|+||.+||+|+++++|||||
T Consensus 306 ~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~---------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHG 372 (507)
T PHA03392 306 SIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE---------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQG 372 (507)
T ss_pred CCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC---------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecC
Confidence 864 578899999999999999999999532 111 1257899999999999999999999999999
Q ss_pred CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 374 GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 374 G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
|+||++||+++|||+|++|+++||+.||+|+++ +|+|+.++ ..++.++|.++|+++|+| ++|++||+++++.+++.
T Consensus 373 G~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 373 GVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ 449 (507)
T ss_pred CcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999965 89999998 689999999999999999 99999999999999974
Q ss_pred HHcCCChHHHHHHHHHHHHH
Q 011792 453 VKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 453 ~~~gg~~~~~~~~~i~~~~~ 472 (477)
.-...+.+..-||.+.+
T Consensus 450 ---p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 450 ---PMTPLHKAIWYTEHVIR 466 (507)
T ss_pred ---CCCHHHHHHHHHHHHHh
Confidence 32344556677777665
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-53 Score=437.76 Aligned_cols=391 Identities=22% Similarity=0.328 Sum_probs=247.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCC-CCh-
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFG-IYT- 85 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~- 85 (477)
||+++|. ++||+.++..|+++|++|||+||++++.. ...+.. ....++.+..++...+....... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSP-SSSLNP--------SKPSNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHH-HHT--------------S-CCEEEE-----TT------TTHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeec-cccccc--------ccccceeeEEEcCCcchHHHhhhhHHHH
Confidence 6888885 77999999999999999999999998843 222221 11223556666544443221111 110
Q ss_pred HHHHH-------------h---hc----hhc-----HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccC
Q 011792 86 KDWFC-------------S---NK----PVS-----KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 86 ~~~~~-------------~---~~----~~~-----~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (477)
...+. . +. ..| .+.+.+.+++. ++|++|+|.+..|+..+|+.+|+|.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 11111 0 00 011 11111222222 7999999999889999999999999887665
Q ss_pred chhhHHHHhhhhhhhhcCCCCCCCCCCCCCceecCCCCCCCCCCC---CCccccCC--CCCChHHHHHHHhhhcccCCce
Q 011792 141 SAYCSWSDFHFSKLAEEGELPVTDENFDKPVTCIPELENIFRNRD---LPSICRHG--GPDDPILQTFIRDTSATTRTSA 215 (477)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~---l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 215 (477)
...........+.+.+++|+|...+.+...+.+.+|+.|.+.... +...+... ..............+.+.+.+.
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASL 229 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHH
Confidence 443322222235677889999998888999999999988221100 00000000 0000000000011122345677
Q ss_pred EEEcChhhhchHHHHHhhhcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEec
Q 011792 216 LVINTFNEIEGPIISKLGSRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFG 295 (477)
Q Consensus 216 ~l~ns~~~le~p~l~~~~~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~G 295 (477)
+++|+.+.++.| +|..|++++||+++..+.+ ++ +.++.+|++..+++++||||||
T Consensus 230 ~l~ns~~~ld~p-----rp~~p~v~~vGgl~~~~~~--------~l------------~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 230 VLINSHPSLDFP-----RPLLPNVVEVGGLHIKPAK--------PL------------PEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp CCSSTEEE---------HHHHCTSTTGCGC-S------------TC------------HHHHHHHTSTTTTTEEEEEE-T
T ss_pred HhhhccccCcCC-----cchhhcccccCcccccccc--------cc------------ccccchhhhccCCCCEEEEecC
Confidence 889997766655 8999999999999876543 33 3446679986467899999999
Q ss_pred Cccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccC
Q 011792 296 SFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSG 374 (477)
Q Consensus 296 s~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG 374 (477)
|... .+.+..+.+++++++++.+|||++++. .. +..++|+++.+|+||.+||.|+++++||||||
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----------~~---~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG 350 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----------PP---ENLPKNVLIVKWLPQNDLLAHPRVKLFITHGG 350 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----------HG---CHHHTTEEEESS--HHHHHTSTTEEEEEES--
T ss_pred cccchhHHHHHHHHHHHHhhCCCccccccccc-----------cc---ccccceEEEeccccchhhhhcccceeeeeccc
Confidence 9986 444558899999999999999999532 11 12568999999999999999999999999999
Q ss_pred chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 375 WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 375 ~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
+||++||+++|||||++|+++||+.||+++++ +|+|+.++ +++|.++|.++|+++|+| ++|++||+++++++++-
T Consensus 351 ~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 351 LNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT--
T ss_pred cchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999965 89999999 699999999999999999 99999999999999874
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-43 Score=350.94 Aligned_cols=381 Identities=20% Similarity=0.278 Sum_probs=254.8
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCC---CCChHHH
Q 011792 12 LPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF---GIYTKDW 88 (477)
Q Consensus 12 ~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~ 88 (477)
+.+|++||++|+++||++|++|||+|+|++++.+.+.+.. .+ ++|..++...+...... ..+....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AG----------AEFVLYGSALPPPDNPPENTEEEPIDI 69 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cC----------CEEEecCCcCccccccccccCcchHHH
Confidence 3579999999999999999999999999999888877766 33 67777775433211000 0233334
Q ss_pred HHhhchhcHHHHHHHHhc-CCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCCCCCC
Q 011792 89 FCSNKPVSKLAFRQLLMT-PGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVTDENF 167 (477)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~-~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 167 (477)
++.+.......+.++... ...+||+||+|.+++++..+|+.+|||+|.+++.+.... .++.+ ..|... ..
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~----~~~~~~-~~ 140 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM----VSPAGE-GS 140 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc----ccccch-hh
Confidence 444443333333333322 122899999999888999999999999999865432110 01110 001000 00
Q ss_pred CCCceecCCCCCCCCCCCC----CccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEeC
Q 011792 168 DKPVTCIPELENIFRNRDL----PSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVG 243 (477)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~vG 243 (477)
.. ... ..+ .....+ ..+............ .+. ....+..++.+.+.|+++. ..++++++++|
T Consensus 141 ~~---~~~-~~~-~~~~~~~~~~~~~r~~~gl~~~~~~----~~~-~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~G 206 (392)
T TIGR01426 141 AE---EGA-IAE-RGLAEYVARLSALLEEHGITTPPVE----FLA-APRRDLNLVYTPKAFQPAG----ETFDDSFTFVG 206 (392)
T ss_pred hh---hhc-ccc-chhHHHHHHHHHHHHHhCCCCCCHH----HHh-cCCcCcEEEeCChHhCCCc----cccCCCeEEEC
Confidence 00 000 000 000000 000000000000000 000 1223345666666665541 33456899999
Q ss_pred ccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 011792 244 PLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVI 323 (477)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 323 (477)
|+...+.+ ...|.....++++||+|+||+....+.+++.+++++...+.++||..
T Consensus 207 p~~~~~~~-------------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 261 (392)
T TIGR01426 207 PCIGDRKE-------------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSV 261 (392)
T ss_pred CCCCCccc-------------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 98754321 11265555678999999999877677789999999999999999888
Q ss_pred ecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHH
Q 011792 324 RSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRC 403 (477)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~r 403 (477)
+... ....+ +..++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||.+
T Consensus 262 g~~~---------~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~ 329 (392)
T TIGR01426 262 GRGV---------DPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARR 329 (392)
T ss_pred CCCC---------ChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHH
Confidence 4321 11111 225689999999999999999887 99999999999999999999999999999999999
Q ss_pred Hhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 404 VSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 404 v~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
+.+ +|+|..+. ..++++.|.++|.++|+| ++|+++++++++.++.. +| ...+.++|++++
T Consensus 330 l~~-~g~g~~l~~~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~~--~~~aa~~i~~~~ 390 (392)
T TIGR01426 330 IAE-LGLGRHLPPEEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---GG--ARRAADEIEGFL 390 (392)
T ss_pred HHH-CCCEEEeccccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHhh
Confidence 954 89999998 589999999999999999 89999999999999986 65 456677777764
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.2e-43 Score=350.03 Aligned_cols=380 Identities=14% Similarity=0.109 Sum_probs=246.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCC------
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPR------ 80 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 80 (477)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...+.. .| ++|..+++..+.....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G----------~~~~~~~~~~~~~~~~~~~~~~ 69 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AG----------LEFVPVGGDPDELLASPERNAG 69 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cC----------CceeeCCCCHHHHHhhhhhccc
Confidence 699999999999999999999999999999999999877666554 33 7777776533221000
Q ss_pred ----CCCChHHHHHhhchhcHHHHHHHHhc-CCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhh
Q 011792 81 ----FGIYTKDWFCSNKPVSKLAFRQLLMT-PGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLA 155 (477)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (477)
...........+.......++++++. ...+||+||+|.+.+++..+|+++|||++.+++++........ .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~---~~- 145 (401)
T cd03784 70 LLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP---PP- 145 (401)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC---Cc-
Confidence 00111222223333333344444433 1239999999998889999999999999999887654321110 00
Q ss_pred hcCCCCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcc-------cCCceEEEcChhhhchHH
Q 011792 156 EEGELPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSAT-------TRTSALVINTFNEIEGPI 228 (477)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~ns~~~le~p~ 228 (477)
. .+... ..+..+ .................... .+ ...+..+....+.+.++
T Consensus 146 -------~-----------~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~- 203 (401)
T cd03784 146 -------L-----------GRANL-RLYALL-EAELWQDLLGAWLRARRRRL-GLPPLSLLDGSDVPELYGFSPAVLPP- 203 (401)
T ss_pred -------c-----------chHHH-HHHHHH-HHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCCcEEEecCcccCCC-
Confidence 0 00000 000000 00000000000000000100 00 11222333333333222
Q ss_pred HHHhhhcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCccc-CCHHHHHH
Q 011792 229 ISKLGSRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIK-LSGDQILE 307 (477)
Q Consensus 229 l~~~~~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~ 307 (477)
..++.++..++|+....++ .+ ...++++..|++. ++++||||+||+.. ....+...
T Consensus 204 ---~~~~~~~~~~~g~~~~~~~----------~~--------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~ 260 (401)
T cd03784 204 ---PPDWPRFDLVTGYGFRDVP----------YN--------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARL 260 (401)
T ss_pred ---CCCccccCcEeCCCCCCCC----------CC--------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHH
Confidence 1233356677763332211 10 1223445567763 67899999999976 44578889
Q ss_pred HHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCc
Q 011792 308 FWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVP 387 (477)
Q Consensus 308 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP 387 (477)
+++++...+.++||+++.... .. ...++|+++.+|+||.++|+++++ ||||||+||++|++++|||
T Consensus 261 ~~~a~~~~~~~~i~~~g~~~~--------~~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP 326 (401)
T cd03784 261 DVEAVATLGQRAILSLGWGGL--------GA----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVP 326 (401)
T ss_pred HHHHHHHcCCeEEEEccCccc--------cc----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCC
Confidence 999999999999999854311 11 125689999999999999999888 9999999999999999999
Q ss_pred eecCCccchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 011792 388 MICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKL 466 (477)
Q Consensus 388 ~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 466 (477)
+|++|+..||+.||+++++ +|+|+.++ ..+++++|.+++++++++ + ++++++++++.++.. +| ...+.++
T Consensus 327 ~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~--~-~~~~~~~~~~~~~~~---~g--~~~~~~~ 397 (401)
T cd03784 327 QLVVPFFGDQPFWAARVAE-LGAGPALDPRELTAERLAAALRRLLDP--P-SRRRAAALLRRIREE---DG--VPSAADV 397 (401)
T ss_pred EEeeCCCCCcHHHHHHHHH-CCCCCCCCcccCCHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHhc---cC--HHHHHHH
Confidence 9999999999999999955 89999998 578999999999999996 4 566777777777665 55 5567777
Q ss_pred HHH
Q 011792 467 IED 469 (477)
Q Consensus 467 i~~ 469 (477)
|++
T Consensus 398 ie~ 400 (401)
T cd03784 398 IER 400 (401)
T ss_pred Hhh
Confidence 765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-42 Score=335.24 Aligned_cols=386 Identities=17% Similarity=0.207 Sum_probs=250.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCC-CCCCCCCC---
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDG-LPPDNPRF--- 81 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~--- 81 (477)
+|||+++..|++||++|+++||++|.++||+|+|+|++.+.+.+.+++ +.|..++.. .+......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag-----------~~f~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG-----------LAFVAYPIRDSELATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC-----------cceeeccccCChhhhhhhhhh
Confidence 489999999999999999999999999999999999999988888754 334444321 11111101
Q ss_pred -CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhh-hhhhhhcCC
Q 011792 82 -GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFH-FSKLAEEGE 159 (477)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (477)
...+...+..+.. ....+.+++.+. .+|+++.|.....+ .+++..++|++............... .+.....+.
T Consensus 70 ~~~~~~~~~~~~~~-~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
T COG1819 70 GVKSFRRLLQQFKK-LIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGK 145 (406)
T ss_pred ccchhHHHhhhhhh-hhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccc
Confidence 1111112222222 333444455554 89999999866555 89999999998866554443222110 000000000
Q ss_pred CCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHh--------hhcccCCceEEEcChhhhchHHHHH
Q 011792 160 LPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRD--------TSATTRTSALVINTFNEIEGPIISK 231 (477)
Q Consensus 160 ~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ns~~~le~p~l~~ 231 (477)
++..... ....+ ........... .......... ...........+...+...+|.
T Consensus 146 ~~~~~~~------~~~~~---~~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (406)
T COG1819 146 LPIPLYP------LPPRL---VRPLIFARSWL-----PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG--- 208 (406)
T ss_pred ccccccc------cChhh---ccccccchhhh-----hhhhhhhhccccccccchHHHhcCCCCccccccccccCCC---
Confidence 0000000 00000 00000000000 0000000000 0000111111111111111110
Q ss_pred hhhcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHH
Q 011792 232 LGSRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHG 311 (477)
Q Consensus 232 ~~~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 311 (477)
+..+....++||+......+ +..|. ..++++||+|+||.... .++++.++++
T Consensus 209 -~~~p~~~~~~~~~~~~~~~~------------------------~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a 260 (406)
T COG1819 209 -DRLPFIGPYIGPLLGEAANE------------------------LPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEA 260 (406)
T ss_pred -CCCCCCcCcccccccccccc------------------------Ccchh--cCCCCeEEEEcCCcccH-HHHHHHHHHH
Confidence 22233556677766544321 11243 34789999999999876 9999999999
Q ss_pred HHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 312 IVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 312 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
+..++.++|+.... . .. .....|.|+++.+|+||..+|+++++ ||||||+|||+|||++|||+|++
T Consensus 261 ~~~l~~~vi~~~~~-~--------~~---~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~ 326 (406)
T COG1819 261 LADLDVRVIVSLGG-A--------RD---TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVI 326 (406)
T ss_pred HhcCCcEEEEeccc-c--------cc---ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEe
Confidence 99999999999943 1 11 11126789999999999999999998 99999999999999999999999
Q ss_pred CccchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011792 392 PQVGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDI 470 (477)
Q Consensus 392 P~~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 470 (477)
|...||++||.|+. ++|+|..+. ..++++.|+++|+++|+| +.|+++++++++.++++ +| ...++++|+++
T Consensus 327 P~~~DQ~~nA~rve-~~G~G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~ 398 (406)
T COG1819 327 PDGADQPLNAERVE-ELGAGIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLEEF 398 (406)
T ss_pred cCCcchhHHHHHHH-HcCCceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHH
Confidence 99999999999995 589999998 599999999999999999 99999999999999998 77 67789999987
Q ss_pred HHh
Q 011792 471 RLM 473 (477)
Q Consensus 471 ~~~ 473 (477)
.+.
T Consensus 399 ~~~ 401 (406)
T COG1819 399 ARE 401 (406)
T ss_pred Hhc
Confidence 654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.7e-41 Score=347.77 Aligned_cols=407 Identities=27% Similarity=0.397 Sum_probs=258.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCccccccc--CCCCeEEEeCCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYK--HFPNFLCTSIPDGLPPDNPRFGI 83 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 83 (477)
+.++++++.|++||++|+..||+.|+++||+||++++.......... ....... ....+.+...+++++........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 36788999999999999999999999999999999986654443321 1000000 00011111111122222110000
Q ss_pred ChHHHHHhhchhcHHHHHHHHhc----CCCCCeEEEECCCcchHHHHHHHcC-CCeEEEccCchhhHHHHhhhhhhhhcC
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMT----PGRLPTCIISDSIMSFAIDVAEELN-IPIITFRPYSAYCSWSDFHFSKLAEEG 158 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~----~~~~~D~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (477)
........+...+...+.+.+.. ...++|++|+|.+..+...+|.... |+...+.+....... ++.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~g~~~~~~ 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLA----LGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHh----cCCcCccc
Confidence 01111233333343344332222 2224999999998666776776665 888777766665433 33333444
Q ss_pred CCCCCCCCCC-CCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHh-----------hhcccCCceEEEcChhhhch
Q 011792 159 ELPVTDENFD-KPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRD-----------TSATTRTSALVINTFNEIEG 226 (477)
Q Consensus 159 ~~p~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~ns~~~le~ 226 (477)
++|....... ..+.+..+..| +....++................... .....+.+..++|+.+.++.
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPN-LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred ccCcccCccccccCcHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 6665554332 34444444443 22222222111100000000000000 02234556777777655444
Q ss_pred HHHHHhhhcCCceeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCC--cEEEEEecCcc---cCC
Q 011792 227 PIISKLGSRLTKIYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSR--SVLYVSFGSFI---KLS 301 (477)
Q Consensus 227 p~l~~~~~~~p~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~---~~~ 301 (477)
+ +++..+++++|||++....+. . . ...++|++..... ++|||||||+. ..+
T Consensus 239 ~----~~~~~~~v~~IG~l~~~~~~~--------~----------~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp 294 (496)
T KOG1192|consen 239 E----PRPLLPKVIPIGPLHVKDSKQ--------K----------S--PLPLEWLDILDESRHSVVYISFGSMVNSADLP 294 (496)
T ss_pred C----CCCCCCCceEECcEEecCccc--------c----------c--cccHHHHHHHhhccCCeEEEECCcccccccCC
Confidence 2 356679999999999873321 0 0 0233466644444 89999999998 699
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHH-HhcccccccccccCchhHH
Q 011792 302 GDQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEV-LAHQAIGGFLTHSGWNSTL 379 (477)
Q Consensus 302 ~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-l~~~~~~~~I~HGG~gs~~ 379 (477)
.+....++.+++.. +..|||+++..... .++.++.++.++||...+|+||.++ |.|+++++||||||+|||+
T Consensus 295 ~~~~~~l~~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~ 368 (496)
T KOG1192|consen 295 EEQKKELAKALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTL 368 (496)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHH
Confidence 99999999999999 88899999753211 1233332212468999999999998 5999999999999999999
Q ss_pred HHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011792 380 ESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARD 451 (477)
Q Consensus 380 eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~ 451 (477)
|++++|||+|++|+++||+.||.+++++ |.|..+. .+.+.+.+.+++..++.+ ++|+++++++++.+++
T Consensus 369 E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 369 ESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRD 438 (496)
T ss_pred HHHhcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999875 5555554 567776699999999999 9999999999999985
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=7.9e-24 Score=205.37 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=195.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc-chhccCCCcccccccCCCCeEEEeCCC-CCCCCCCCCCCCh
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY-HDRLFGNTDVTAFYKHFPNFLCTSIPD-GLPPDNPRFGIYT 85 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 85 (477)
+|++.+.|+-||+.|.++||++|.++||+|.|++...- ...+.+.. .+.+..++. ++.. ...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~----------g~~~~~~~~~~l~~-----~~~- 66 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE----------NIPYYSISSGKLRR-----YFD- 66 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc----------CCcEEEEeccCcCC-----Cch-
Confidence 78888888889999999999999999999999987432 22222211 256666552 1111 001
Q ss_pred HHHHHhhchh--cHHHHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCC
Q 011792 86 KDWFCSNKPV--SKLAFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELP 161 (477)
Q Consensus 86 ~~~~~~~~~~--~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (477)
...+....+. ..-....++++. +||+|++..... .+..+|..+++|++......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------------- 124 (352)
T PRK12446 67 LKNIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------------
Confidence 1122222211 122334556666 999999987555 36889999999998853221
Q ss_pred CCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeE
Q 011792 162 VTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYT 241 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~ 241 (477)
.+++.| +... ..++.++ .+|++ . ..... ..++++
T Consensus 125 ------------~~g~~n---------------------r~~~------~~a~~v~-~~f~~---~-~~~~~--~~k~~~ 158 (352)
T PRK12446 125 ------------TPGLAN---------------------KIAL------RFASKIF-VTFEE---A-AKHLP--KEKVIY 158 (352)
T ss_pred ------------CccHHH---------------------HHHH------HhhCEEE-EEccc---h-hhhCC--CCCeEE
Confidence 112222 1111 1122222 22221 1 00111 136788
Q ss_pred eCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCH-HHHHHHHHHHHhCCCcEE
Q 011792 242 VGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSG-DQILEFWHGIVNSGKGFL 320 (477)
Q Consensus 242 vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i 320 (477)
+|+.....-. . ...+...+.++..+++++|+|..||.....- +.+..++..+.. +.+++
T Consensus 159 tG~Pvr~~~~----------------~---~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv 218 (352)
T PRK12446 159 TGSPVREEVL----------------K---GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIV 218 (352)
T ss_pred ECCcCCcccc----------------c---ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEE
Confidence 9986643210 0 0011111122223467899999999985333 444445544432 47888
Q ss_pred EEEecCCcCCCCCCCCCchhhHhhhcCCCceeecc-C-HHHHHhcccccccccccCchhHHHHhhcCCceecCCcc----
Q 011792 321 WVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWA-P-QEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQV---- 394 (477)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~-p-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---- 394 (477)
|+++.. .+..... . -.++.+.+|+ + -..++..+++ +|||||.+|++|++++|+|+|++|+.
T Consensus 219 ~~~G~~---------~~~~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 219 HLCGKG---------NLDDSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred EEeCCc---------hHHHHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCC
Confidence 888532 1111111 1 1355666787 4 4468989888 99999999999999999999999984
Q ss_pred -chhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011792 395 -GDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 395 -~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
.||..||..+++ .|+|..+. .+++++.|.+++.++++|. +.|++++++
T Consensus 286 ~~~Q~~Na~~l~~-~g~~~~l~~~~~~~~~l~~~l~~ll~~~-~~~~~~~~~ 335 (352)
T PRK12446 286 RGDQILNAESFER-QGYASVLYEEDVTVNSLIKHVEELSHNN-EKYKTALKK 335 (352)
T ss_pred CchHHHHHHHHHH-CCCEEEcchhcCCHHHHHHHHHHHHcCH-HHHHHHHHH
Confidence 489999999965 89999997 6899999999999999861 355544444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=7.7e-24 Score=204.59 Aligned_cols=304 Identities=15% Similarity=0.187 Sum_probs=188.7
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 7 PHVVLLPFP-AYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 7 ~~il~~~~~-~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
|||+|...+ |.||+.++++||++| |||+|+|++.....+.+.+. +.+..+++-..... ....+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------------FPVREIPGLGPIQE-NGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------------cCEEEccCceEecc-CCccch
Confidence 688888886 779999999999999 69999999987554444321 33344432111111 111122
Q ss_pred HHHHHhhc------hhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCC
Q 011792 86 KDWFCSNK------PVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGE 159 (477)
Q Consensus 86 ~~~~~~~~------~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 159 (477)
...+.... ......+.+++++. +||+||+|. .+.+..+|+..|||++.+..........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~------------ 130 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN------------ 130 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc------------
Confidence 22111111 11223344555555 899999996 5567789999999999976554321000
Q ss_pred CCCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCce
Q 011792 160 LPVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKI 239 (477)
Q Consensus 160 ~p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~ 239 (477)
.+.+ .. .........+.... ....++..+.-+++ .+ .+...++
T Consensus 131 ------------~~~~-------~~---------~~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~-----~~~~~~~ 173 (318)
T PF13528_consen 131 ------------FWLP-------WD---------QDFGRLIERYIDRY-HFPPADRRLALSFY---PP-----LPPFFRV 173 (318)
T ss_pred ------------CCcc-------hh---------hhHHHHHHHhhhhc-cCCcccceecCCcc---cc-----ccccccc
Confidence 0000 00 00000001111110 12334444444433 11 1112256
Q ss_pred eEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCC-Cc
Q 011792 240 YTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSG-KG 318 (477)
Q Consensus 240 ~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~ 318 (477)
.++||+...... . .- ..+++.|+|++|..... .++++++..+ .+
T Consensus 174 ~~~~p~~~~~~~----------~-----------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~ 218 (318)
T PF13528_consen 174 PFVGPIIRPEIR----------E-----------------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQ 218 (318)
T ss_pred cccCchhccccc----------c-----------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCe
Confidence 678887753221 0 00 12456799999988643 6677777766 45
Q ss_pred EEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeecc--CHHHHHhcccccccccccCchhHHHHhhcCCceecCCc--c
Q 011792 319 FLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWA--PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ--V 394 (477)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~--~ 394 (477)
+++. +... . +..++|+.+.+|. ...++|+.|++ +|+|||.||++|++++|+|+|++|. .
T Consensus 219 ~~v~-g~~~----------~----~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~ 281 (318)
T PF13528_consen 219 FIVF-GPNA----------A----DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQ 281 (318)
T ss_pred EEEE-cCCc----------c----cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 5544 3221 0 0125799999886 45669988887 9999999999999999999999999 7
Q ss_pred chhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHH
Q 011792 395 GDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDL 430 (477)
Q Consensus 395 ~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~l 430 (477)
.||..||.++. ++|+|..++ .+++++.|.++|.++
T Consensus 282 ~EQ~~~a~~l~-~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 282 DEQEYNARKLE-ELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred chHHHHHHHHH-HCCCeEEcccccCCHHHHHHHHhcC
Confidence 89999999995 589999998 799999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=3e-21 Score=184.96 Aligned_cols=325 Identities=19% Similarity=0.197 Sum_probs=199.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCC-ccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGF-RITFVNTD-QYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH-~Vt~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (477)
++|++...++-||+.|.++|+++|.++|+ +|.+..+. .....+.+.. .+.++.++-+-..... ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~----------~~~~~~I~~~~~~~~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY----------GIEFELIPSGGLRRKG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecccc----------CceEEEEecccccccC-cHHH
Confidence 46888888888999999999999999999 57777443 3333443322 2666666532222111 0111
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCC
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPV 162 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (477)
....+..+. ...+.+.++++. +||+||...-+. .+..+|..+|||++..-.
T Consensus 70 ~~~~~~~~~--~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq----------------------- 122 (357)
T COG0707 70 LKAPFKLLK--GVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ----------------------- 122 (357)
T ss_pred HHHHHHHHH--HHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEec-----------------------
Confidence 111111111 234567778876 999999966555 677899999999998422
Q ss_pred CCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEe
Q 011792 163 TDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTV 242 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~v 242 (477)
...+++.|.+. .+. ++.+ ..+|+..+. .....++..+
T Consensus 123 ---------n~~~G~ank~~---------------------~~~------a~~V-~~~f~~~~~------~~~~~~~~~t 159 (357)
T COG0707 123 ---------NAVPGLANKIL---------------------SKF------AKKV-ASAFPKLEA------GVKPENVVVT 159 (357)
T ss_pred ---------CCCcchhHHHh---------------------HHh------hcee-eeccccccc------cCCCCceEEe
Confidence 22333333000 000 1111 122221000 0011256777
Q ss_pred CccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEE
Q 011792 243 GPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLS-GDQILEFWHGIVNSGKGFLW 321 (477)
Q Consensus 243 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~ 321 (477)
|-....+- . ..+..-..+.. ..++++|+|+-||..... .+.+..+...+.. +.++++
T Consensus 160 G~Pvr~~~-----------~---------~~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~ 217 (357)
T COG0707 160 GIPVRPEF-----------E---------ELPAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIH 217 (357)
T ss_pred cCcccHHh-----------h---------ccchhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEE
Confidence 75443211 0 00000011111 126789999999997532 2333444444433 467777
Q ss_pred EEecCCcCCCCCCCCCchhhHhhhc-CC-CceeeccCHHH-HHhcccccccccccCchhHHHHhhcCCceecCCcc----
Q 011792 322 VIRSDLIDGESGVGPVPAELDQGTK-ER-GCIVSWAPQEE-VLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQV---- 394 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~~p~~~-ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---- 394 (477)
..+... ......... .+ +.+.+|..+.. +++.+|+ +||++|.+|+.|++++|+|+|.+|.-
T Consensus 218 ~~G~~~----------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~ 285 (357)
T COG0707 218 QTGKND----------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGAD 285 (357)
T ss_pred EcCcch----------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCcc
Confidence 774331 111111111 23 66779988655 8877777 99999999999999999999999972
Q ss_pred chhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 395 GDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 395 ~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
.||..||..+++ .|+|..++ .++|.+.+.+.|.+++++ .++.++|++..++.
T Consensus 286 ~~Q~~NA~~l~~-~gaa~~i~~~~lt~~~l~~~i~~l~~~-----~~~l~~m~~~a~~~ 338 (357)
T COG0707 286 GHQEYNAKFLEK-AGAALVIRQSELTPEKLAELILRLLSN-----PEKLKAMAENAKKL 338 (357)
T ss_pred chHHHHHHHHHh-CCCEEEeccccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHhc
Confidence 389999999955 89999998 689999999999999986 46666777777665
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=7.2e-22 Score=190.40 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=90.3
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccC--HHHHHhc
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAP--QEEVLAH 363 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p--~~~ll~~ 363 (477)
+++.|++.+|+... +.+++++...+. +.+.+.... .... ..++|+.+.+|.| ...+|+.
T Consensus 187 ~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~--------~~~~----~~~~~v~~~~~~~~~~~~~l~~ 247 (321)
T TIGR00661 187 GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE--------VAKN----SYNENVEIRRITTDNFKELIKN 247 (321)
T ss_pred CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--------CCcc----ccCCCEEEEECChHHHHHHHHh
Confidence 44667788887542 455677766653 223322110 1111 1357999999997 4457777
Q ss_pred ccccccccccCchhHHHHhhcCCceecCCccc--hhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHH
Q 011792 364 QAIGGFLTHSGWNSTLESMVAGVPMICWPQVG--DQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIM 439 (477)
Q Consensus 364 ~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~ 439 (477)
|++ +|||||.+|++|++++|+|++++|... ||..||..+++ +|+|+.++ .++ ++.+++.++++| +.|+
T Consensus 248 ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~~~~~~~~~~~--~~~~ 318 (321)
T TIGR00661 248 AEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RLLEAILDIRNM--KRYK 318 (321)
T ss_pred CCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HHHHHHHhcccc--cccc
Confidence 777 999999999999999999999999855 89999999965 89999997 344 666677777766 5553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=1.1e-17 Score=164.34 Aligned_cols=321 Identities=14% Similarity=0.124 Sum_probs=186.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchh-ccCCCcccccccCCCCeEEEeCCCC-CCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDR-LFGNTDVTAFYKHFPNFLCTSIPDG-LPPDNPRFGIY 84 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 84 (477)
|||+|...+..||...++.|++.|.++||+|++++.+..... ..+. ..+.+..++.. .... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~------~ 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK----------AGIEFHFIPSGGLRRK------G 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc----------CCCcEEEEeccCcCCC------C
Confidence 789999988889999999999999999999999988542111 1010 12445554421 1111 1
Q ss_pred hHHHHHhhch--hcHHHHHHHHhcCCCCCeEEEECCCc--chHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCC
Q 011792 85 TKDWFCSNKP--VSKLAFRQLLMTPGRLPTCIISDSIM--SFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGEL 160 (477)
Q Consensus 85 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (477)
....+..... .....+.+++++. +||+|++.... ..+..++...++|++..... .
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~------------------ 124 (357)
T PRK00726 66 SLANLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A------------------ 124 (357)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C------------------
Confidence 1111111111 1233456677765 89999999743 24566788889999863110 0
Q ss_pred CCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCcee
Q 011792 161 PVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIY 240 (477)
Q Consensus 161 p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~ 240 (477)
.++ ...+..+ ..++.+++.+...+ . .....++.
T Consensus 125 -------------~~~---------------------~~~r~~~------~~~d~ii~~~~~~~-----~--~~~~~~i~ 157 (357)
T PRK00726 125 -------------VPG---------------------LANKLLA------RFAKKVATAFPGAF-----P--EFFKPKAV 157 (357)
T ss_pred -------------Ccc---------------------HHHHHHH------HHhchheECchhhh-----h--ccCCCCEE
Confidence 000 0000011 12233333331111 0 11124778
Q ss_pred EeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCC--c
Q 011792 241 TVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGK--G 318 (477)
Q Consensus 241 ~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~ 318 (477)
++|......... + .. .. .++ ...++.++|++..|+... ......+.+++++... .
T Consensus 158 vi~n~v~~~~~~---------~-----~~---~~---~~~-~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~ 214 (357)
T PRK00726 158 VTGNPVREEILA---------L-----AA---PP---ARL-AGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQ 214 (357)
T ss_pred EECCCCChHhhc---------c-----cc---hh---hhc-cCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcE
Confidence 888665432110 0 00 00 011 111244566665555432 1222333355554433 3
Q ss_pred EEEEEecCCcCCCCCCCCCchhhHhh--hcCCCceeeccC-HHHHHhcccccccccccCchhHHHHhhcCCceecCCc--
Q 011792 319 FLWVIRSDLIDGESGVGPVPAELDQG--TKERGCIVSWAP-QEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ-- 393 (477)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~-- 393 (477)
+++.++. |. . +.+.+. ..-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|.
T Consensus 215 ~~~~~G~------g~---~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 215 VIHQTGK------GD---L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPH 282 (357)
T ss_pred EEEEcCC------Cc---H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCC
Confidence 4445532 11 1 222111 122367789984 5679999888 9999999999999999999999997
Q ss_pred --cchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 011792 394 --VGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMA 449 (477)
Q Consensus 394 --~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~ 449 (477)
..+|..|+..+.+ .|.|..+. ++++++.|.+++.++++| +.++++..+-+..+
T Consensus 283 ~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~ 338 (357)
T PRK00726 283 AADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKLLELLSD--PERLEAMAEAARAL 338 (357)
T ss_pred CCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHHHHHHcC--HHHHHHHHHHHHhc
Confidence 4689999999965 79999997 577899999999999998 77766555555444
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=3.8e-16 Score=153.05 Aligned_cols=320 Identities=16% Similarity=0.141 Sum_probs=182.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCC-CCCCCCCCCCChH
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDG-LPPDNPRFGIYTK 86 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 86 (477)
||++...++.||....+.|++.|.++||+|++++..... .... ....++++..++-. ..... ....+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGL-EARL--------VPKAGIPLHTIPVGGLRRKG--SLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcc-hhhc--------ccccCCceEEEEecCcCCCC--hHHHHH
Confidence 588888888899999999999999999999999874321 1000 00112555555421 11110 000111
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCCC
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVTD 164 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 164 (477)
.++.. . .....+..++++. +||+|+++.... .+..+|...|+|++..... .
T Consensus 70 ~~~~~-~-~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~---------------------- 122 (350)
T cd03785 70 APFKL-L-KGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A---------------------- 122 (350)
T ss_pred HHHHH-H-HHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C----------------------
Confidence 11111 1 1233456667665 899999976432 4567888999998763110 0
Q ss_pred CCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEeCc
Q 011792 165 ENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVGP 244 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~vG~ 244 (477)
+++. ...+. ...++.+++.+....+. -...++.++|.
T Consensus 123 ---------~~~~----------------------~~~~~-----~~~~~~vi~~s~~~~~~-------~~~~~~~~i~n 159 (350)
T cd03785 123 ---------VPGL----------------------ANRLL-----ARFADRVALSFPETAKY-------FPKDKAVVTGN 159 (350)
T ss_pred ---------CccH----------------------HHHHH-----HHhhCEEEEcchhhhhc-------CCCCcEEEECC
Confidence 0000 00000 02245555555322111 01136777776
Q ss_pred cccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCC-HHHHHHHHHHHHhCCCcEEEEE
Q 011792 245 LHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLS-GDQILEFWHGIVNSGKGFLWVI 323 (477)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~ 323 (477)
....... . ..+. ........++++|++..|+..... .+++..++..+...+..+++.+
T Consensus 160 ~v~~~~~----------~----------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~ 218 (350)
T cd03785 160 PVREEIL----------A----------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQT 218 (350)
T ss_pred CCchHHh----------h----------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEc
Confidence 5432110 0 0000 111121234556666666654221 1223233344433233445555
Q ss_pred ecCCcCCCCCCCCCchhhHhhhcCCCceeecc-CHHHHHhcccccccccccCchhHHHHhhcCCceecCCc----cchhh
Q 011792 324 RSDLIDGESGVGPVPAELDQGTKERGCIVSWA-PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ----VGDQQ 398 (477)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~-p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~ 398 (477)
+. |..+.+..... ...+|+.+.+|+ ....+|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|.
T Consensus 219 G~------g~~~~l~~~~~-~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 219 GK------GDLEEVKKAYE-ELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred CC------ccHHHHHHHHh-ccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 32 11011111111 113689999998 45668988888 9999999999999999999999986 35788
Q ss_pred hhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHHHHHHH
Q 011792 399 VNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRDKIMES 441 (477)
Q Consensus 399 ~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~~~~~~ 441 (477)
.|+..+.+ .|.|..++ ...+.+++.+++..+++| +..+++
T Consensus 290 ~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i~~ll~~--~~~~~~ 330 (350)
T cd03785 290 ANARALVK-AGAAVLIPQEELTPERLAAALLELLSD--PERLKA 330 (350)
T ss_pred HhHHHHHh-CCCEEEEecCCCCHHHHHHHHHHHhcC--HHHHHH
Confidence 89999965 79999987 357999999999999987 554443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.69 E-value=8.5e-15 Score=143.35 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=71.3
Q ss_pred CHHHHHhcccccccccccCchhHHHHhhcCCceecCCcc---chhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHH
Q 011792 356 PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQV---GDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLM 431 (477)
Q Consensus 356 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll 431 (477)
....+|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++ ++.+++.|.+++.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEecccCCHHHHHHHHHHHH
Confidence 45678988888 99999988999999999999999863 467788888855 79999887 5678999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 011792 432 DNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 432 ~~~~~~~~~~a~~l~~~~~~~ 452 (477)
+| ++.+ ++|++..++.
T Consensus 320 ~~--~~~~---~~~~~~~~~~ 335 (348)
T TIGR01133 320 LD--PANL---EAMAEAARKL 335 (348)
T ss_pred cC--HHHH---HHHHHHHHhc
Confidence 97 6544 3444444443
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=132.27 Aligned_cols=337 Identities=15% Similarity=0.135 Sum_probs=201.6
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCC-CC
Q 011792 6 VPHVVLLPF--PAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDN-PR 80 (477)
Q Consensus 6 ~~~il~~~~--~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 80 (477)
.+||+|.+. .|.||+..++.+|++|+.. |.+|++++......- ......++|+.+|.-.-..+ ..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~----------F~~~~gVd~V~LPsl~k~~~G~~ 78 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGG----------FPGPAGVDFVKLPSLIKGDNGEY 78 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCC----------CCCcccCceEecCceEecCCCce
Confidence 569999999 4669999999999999998 999999998543211 23334589999984222211 01
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCC
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGEL 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (477)
...+...-...+.+.....+...++.. +||++|+|.+-++. .-+.+ ++..+.. .
T Consensus 79 ~~~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Gl--r~EL~-------------ptL~yl~--~------- 132 (400)
T COG4671 79 GLVDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGL--RFELL-------------PTLEYLK--T------- 132 (400)
T ss_pred eeeecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccch--hhhhh-------------HHHHHHh--h-------
Confidence 111111114444443444555556655 99999999976541 11110 0111110 0
Q ss_pred CCCCCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHH--HHhhhcCCc
Q 011792 161 PVTDENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPII--SKLGSRLTK 238 (477)
Q Consensus 161 p~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l--~~~~~~~p~ 238 (477)
.. +... +..+.+........ .+...+...+... ...|.+++...|.|.-+.. +++......
T Consensus 133 --~~---t~~v---------L~lr~i~D~p~~~~-~~w~~~~~~~~I~--r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 133 --TG---TRLV---------LGLRSIRDIPQELE-ADWRRAETVRLIN--RFYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred --cC---Ccce---------eehHhhhhchhhhc-cchhhhHHHHHHH--HhheEEEEecCccccChhhcCCccHhhhhh
Confidence 00 0000 11111110000000 0000111111111 3357788877776555432 333445578
Q ss_pred eeEeCccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHh-CCC
Q 011792 239 IYTVGPLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVN-SGK 317 (477)
Q Consensus 239 ~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~ 317 (477)
+.|+|.+....+.- +.| |.. .+.+.-|+||-|... ...+++.+++.|-.. .+.
T Consensus 196 ~~ytG~vq~~~~~~-------~~p-----------------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l 249 (400)
T COG4671 196 MRYTGFVQRSLPHL-------PLP-----------------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGL 249 (400)
T ss_pred eeEeEEeeccCcCC-------CCC-----------------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCC
Confidence 99999993321100 122 111 134456888888765 466778887777766 344
Q ss_pred cEEEEEecCCcCCCCCCCCCchhhHhhh----c--CCCceeeccCH-HHHHhcccccccccccCchhHHHHhhcCCceec
Q 011792 318 GFLWVIRSDLIDGESGVGPVPAELDQGT----K--ERGCIVSWAPQ-EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMIC 390 (477)
Q Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~--~nv~~~~~~p~-~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~ 390 (477)
+-.|.+-. |. ..|....++. + +++.+..|-.+ ..++..++. +|+-||.||+.|-|.+|+|.|+
T Consensus 250 ~~~~~ivt------GP--~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLi 319 (400)
T COG4671 250 NHKWLIVT------GP--FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALI 319 (400)
T ss_pred CcceEEEe------CC--CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEE
Confidence 42333211 21 3444333322 3 67888899764 458877777 9999999999999999999999
Q ss_pred CCccc---hhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHh
Q 011792 391 WPQVG---DQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 391 ~P~~~---DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~ 432 (477)
+|... +|-.-|.|+. ++|+--.+- +.++++.+++++...++
T Consensus 320 vPr~~p~eEQliRA~Rl~-~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 320 VPRAAPREEQLIRAQRLE-ELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred eccCCCcHHHHHHHHHHH-hcCcceeeCcccCChHHHHHHHHhccc
Confidence 99854 8999999995 599988887 78999999999999987
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=1.1e-14 Score=143.61 Aligned_cols=348 Identities=12% Similarity=0.016 Sum_probs=190.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
.||+|...++.||+.|. +|+++|.++|++|.|++.... .+.+.+.. ..+++..++ .... . ...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-------~~~~~~~l~----v~G~--~-~~l 68 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-------VLYSMEELS----VMGL--R-EVL 68 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-------cccChHHhh----hccH--H-HHH
Confidence 68999999999999999 999999999999999987431 33332210 012222222 1000 0 011
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc-h--HHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCC
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS-F--AIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVT 163 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~-~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (477)
..+..+.+ ...++..++++. +||+||.-.... . ....|+.+|||++.+.+-..
T Consensus 69 ~~~~~~~~-~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~--------------------- 124 (385)
T TIGR00215 69 GRLGRLLK-IRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV--------------------- 124 (385)
T ss_pred HHHHHHHH-HHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH---------------------
Confidence 11222222 233566677765 999999855322 3 23388999999987531000
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEeC
Q 011792 164 DENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVG 243 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~vG 243 (477)
+.|. +..| +.+. ..+|.+++.+..+ ... ....--+..+||
T Consensus 125 -------waw~-~~~~---------------------r~l~------~~~d~v~~~~~~e--~~~---~~~~g~~~~~vG 164 (385)
T TIGR00215 125 -------WAWR-KWRA---------------------KKIE------KATDFLLAILPFE--KAF---YQKKNVPCRFVG 164 (385)
T ss_pred -------hhcC-cchH---------------------HHHH------HHHhHhhccCCCc--HHH---HHhcCCCEEEEC
Confidence 0011 0000 1111 2233333333221 111 122223566788
Q ss_pred ccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhC-----CCc
Q 011792 244 PLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNS-----GKG 318 (477)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~ 318 (477)
....+... ... ....+..+-++-..++++|.+-.||....-......+++++... +.+
T Consensus 165 nPv~~~~~--------~~~---------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~ 227 (385)
T TIGR00215 165 HPLLDAIP--------LYK---------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLR 227 (385)
T ss_pred Cchhhhcc--------ccC---------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeE
Confidence 54433210 000 00111111122224567888888887542133445555544432 234
Q ss_pred EEEEEecCCcCCCCCCCCCchhhH---hhhcCCCceeecc-CHHHHHhcccccccccccCchhHHHHhhcCCceecC---
Q 011792 319 FLWVIRSDLIDGESGVGPVPAELD---QGTKERGCIVSWA-PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW--- 391 (477)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~-p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~--- 391 (477)
+++..... .....+. +....+..+..+. ....++..+|+ +|+-+|..|+ |++++|+|+|++
T Consensus 228 ~vi~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 228 RVLPVVNF---------KRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRM 295 (385)
T ss_pred EEEEeCCc---------hhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcC
Confidence 55544211 1111111 1111133332221 33458888887 9999999888 999999999999
Q ss_pred -Cccc---------hhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhHhHH----HHHHHHHHHHHHHHHHHHcC
Q 011792 392 -PQVG---------DQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDNKRD----KIMESTVQIAKMARDAVKEG 456 (477)
Q Consensus 392 -P~~~---------DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~~~~----~~~~~a~~l~~~~~~~~~~g 456 (477)
|+.. +|..|+..++. .++...+. .++|++.|.+.+.++|+| + +++++.++--..+++...++
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEECTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCN 372 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCCCCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCC
Confidence 7632 27779998965 58888887 789999999999999998 6 55555555545555544456
Q ss_pred CChHHHHHHHH
Q 011792 457 GSSYRNLEKLI 467 (477)
Q Consensus 457 g~~~~~~~~~i 467 (477)
|.+.++++.++
T Consensus 373 ~~~~~~a~~i~ 383 (385)
T TIGR00215 373 ADSERAAQAVL 383 (385)
T ss_pred CHHHHHHHHHh
Confidence 66666654443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=4e-13 Score=133.08 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=96.1
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhH---hhhcCCCceeeccCHH-HH
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELD---QGTKERGCIVSWAPQE-EV 360 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~p~~-~l 360 (477)
++++|++..|+..... .+..+++++... +.++++..+.+ ..+...+. +..++|+.+.+|+++. .+
T Consensus 201 ~~~~il~~~G~~~~~k--~~~~li~~l~~~~~~~~viv~G~~--------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVLG--NVKELCQSLMSVPDLQVVVVCGKN--------EALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCCc--CHHHHHHHHhhCCCcEEEEEeCCC--------HHHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 4567777778775321 234566666543 45666665321 01111221 1223589999999864 69
Q ss_pred HhcccccccccccCchhHHHHhhcCCceecC-CccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHH
Q 011792 361 LAHQAIGGFLTHSGWNSTLESMVAGVPMICW-PQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIM 439 (477)
Q Consensus 361 l~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~ 439 (477)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|+|+.. .+.+++.+++.++++| ++.+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~---~~~~~l~~~i~~ll~~--~~~~ 342 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI---RDDEEVFAKTEALLQD--DMKL 342 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE---CCHHHHHHHHHHHHCC--HHHH
Confidence 989888 99999988999999999999985 666777889888854 6998865 4789999999999997 6544
Q ss_pred HH
Q 011792 440 ES 441 (477)
Q Consensus 440 ~~ 441 (477)
++
T Consensus 343 ~~ 344 (380)
T PRK13609 343 LQ 344 (380)
T ss_pred HH
Confidence 43
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.59 E-value=1.2e-13 Score=129.95 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=76.1
Q ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHhC--CCcEEEEEecCCcCCCCCCCCCchhhHh--hhcCCCceeeccCHH-HHH
Q 011792 287 RSVLYVSFGSFIKLSGDQILEFWHGIVNS--GKGFLWVIRSDLIDGESGVGPVPAELDQ--GTKERGCIVSWAPQE-EVL 361 (477)
Q Consensus 287 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~-~ll 361 (477)
.+.|+++||..... .+...+++++... +.++.++++.. ......+.+ ....|+.+..++++. .+|
T Consensus 170 ~~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~--------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSS--------NPNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCC--------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 35799999966532 2455666777654 34666766332 122222222 124588889999976 699
Q ss_pred hcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHH
Q 011792 362 AHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRC 403 (477)
Q Consensus 362 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~r 403 (477)
+.+++ +||+|| +|++|+++.|+|+|++|...+|..||..
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99998 999999 9999999999999999999999999864
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.49 E-value=3.6e-12 Score=126.37 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=99.6
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHh--CCCcEEEEEecCCcCCCCCCCCCchhhHhh--hcCCCceeeccCHH-H
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVN--SGKGFLWVIRSDLIDGESGVGPVPAELDQG--TKERGCIVSWAPQE-E 359 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~~-~ 359 (477)
+++++|++..|+.... ..+..+++++.. .+.++++..+.. ..+-..+.+. ..+++.+.+|+.+. .
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~--------~~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKS--------KELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCC--------HHHHHHHHHHhccCCCeEEEeccchHHH
Confidence 3567888888887621 223334444322 234666665321 1111122211 23578888999754 5
Q ss_pred HHhcccccccccccCchhHHHHhhcCCceecC-CccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHH
Q 011792 360 VLAHQAIGGFLTHSGWNSTLESMVAGVPMICW-PQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKI 438 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~ 438 (477)
++..+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.+++.++|.++++| ++
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~---~~~~l~~~i~~ll~~--~~- 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD---TPEEAIKIVASLTNG--NE- 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC---CHHHHHHHHHHHhcC--HH-
Confidence 8988888 99998888999999999999998 666667789988854 79998763 889999999999987 43
Q ss_pred HHHHHHHHHHHHHH
Q 011792 439 MESTVQIAKMARDA 452 (477)
Q Consensus 439 ~~~a~~l~~~~~~~ 452 (477)
..++|++..++.
T Consensus 341 --~~~~m~~~~~~~ 352 (391)
T PRK13608 341 --QLTNMISTMEQD 352 (391)
T ss_pred --HHHHHHHHHHHh
Confidence 334555555554
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.49 E-value=8.7e-12 Score=123.62 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHHhcccccccccccCchhHHHHhhcCCceecCCccc------h--hhhh-----HHHHhhhhceeeecc-CCCCHHH
Q 011792 357 QEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVG------D--QQVN-----SRCVSEIWKIGFDMK-DTCDRST 422 (477)
Q Consensus 357 ~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~------D--Q~~n-----a~rv~~~~G~G~~l~-~~~~~~~ 422 (477)
-..++..+|+ +|+-+|.+++ |++++|+|+|+.|-.. + |..| +..+++ .|++..+. ...+++.
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEEATPEK 330 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCCCCHHH
Confidence 3558888887 9999998887 9999999999985422 2 2112 222322 23333344 5789999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 423 IEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 423 l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
|.+++.++++| ++.+++..+-.+.+++.. ..|+. ..+.++|.++..+
T Consensus 331 l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~-~~~~~~i~~~~~~ 377 (380)
T PRK00025 331 LARALLPLLAD--GARRQALLEGFTELHQQL-RCGAD-ERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHH-HHHHHHHHHHhhh
Confidence 99999999998 665554444333333322 23333 3344555554443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.48 E-value=2.3e-15 Score=130.85 Aligned_cols=135 Identities=13% Similarity=0.230 Sum_probs=93.8
Q ss_pred EEEEEecCcccCC-HHHHHHHHHHHHhC--CCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccC-HHHHHhcc
Q 011792 289 VLYVSFGSFIKLS-GDQILEFWHGIVNS--GKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAP-QEEVLAHQ 364 (477)
Q Consensus 289 ~v~vs~Gs~~~~~-~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~ 364 (477)
+|+|+.||..... ...+..+...+... ..+++++++..... .....+ +....|+.+.+|++ ...++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~------~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE------ELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH------HHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH------HHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 5899999875321 12222233333332 46788888533111 001100 11125788999999 77899999
Q ss_pred cccccccccCchhHHHHhhcCCceecCCccc----hhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHHHHHhH
Q 011792 365 AIGGFLTHSGWNSTLESMVAGVPMICWPQVG----DQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 365 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~----DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~~ll~~ 433 (477)
|+ +|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+. ...+.+.|.++|.+++.+
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcC
Confidence 98 999999999999999999999999988 99999999965 79999998 577799999999999996
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.41 E-value=4.9e-11 Score=118.08 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCceeeccCHH-HHHhcccccccccccCchhHHHHhhcCCceecCCccchhh-hhHHHHhhhhceeeeccCCCCHHHHH
Q 011792 347 ERGCIVSWAPQE-EVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQ-VNSRCVSEIWKIGFDMKDTCDRSTIE 424 (477)
Q Consensus 347 ~nv~~~~~~p~~-~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~~l~ 424 (477)
.++.+.+|+++. .++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+ .|.|+.. -++++|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec---CCHHHHH
Confidence 467888999854 48888888 999999999999999999999998776675 58887855 7999866 5899999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 425 KLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 425 ~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
+++.++++| . .+..++|++..++.
T Consensus 339 ~~i~~ll~~--~--~~~~~~m~~~~~~~ 362 (382)
T PLN02605 339 RIVAEWFGD--K--SDELEAMSENALKL 362 (382)
T ss_pred HHHHHHHcC--C--HHHHHHHHHHHHHh
Confidence 999999985 2 23445566665554
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=1e-12 Score=110.44 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=81.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHH
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDW 88 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (477)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+ .| ++|..++.. .... ........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-~G----------l~~~~~~~~-~~~~--~~~~~~~~ 66 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-AG----------LEFVPIPGD-SRLP--RSLEPLAN 66 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-TT-----------EEEESSSC-GGGG--HHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-cC----------ceEEEecCC-cCcC--cccchhhh
Confidence 7899999999999999999999999999999999888888744 44 888888744 0000 00001111
Q ss_pred HHhhch------hcHHHHHHHHhc----C--CCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhh
Q 011792 89 FCSNKP------VSKLAFRQLLMT----P--GRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYC 144 (477)
Q Consensus 89 ~~~~~~------~~~~~l~~~l~~----~--~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 144 (477)
+....+ .....+.+...+ . ....|+++.+.....+..+|+++|||++.....+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 67 LRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 111111 122222332222 1 1268899999988899999999999999988877754
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.32 E-value=6.8e-10 Score=109.71 Aligned_cols=335 Identities=13% Similarity=0.033 Sum_probs=176.0
Q ss_pred CCCCCCHHHHHHHHHHHHh--CCCeEE---EEeCCcc-chhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 14 FPAYGHIKPMLSLAKLFSH--AGFRIT---FVNTDQY-HDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 14 ~~~~GHv~p~l~La~~L~~--rGH~Vt---~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
.-|+|-=.--++||++|.+ .|++|. +++...- ...+.+. .. .+.. ++..... ......
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~---------~g--~~~~----~~sgg~~-~~~~~~ 67 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI---------IG--PTKE----LPSGGFS-YQSLRG 67 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce---------eC--CCCC----CCCCCcc-CCCHHH
Confidence 3456777788999999998 699999 9887532 2222111 01 2222 2332221 122233
Q ss_pred HHHhhch----hcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCC
Q 011792 88 WFCSNKP----VSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVT 163 (477)
Q Consensus 88 ~~~~~~~----~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (477)
.+..... .+..+ ..++++...+||+||+-.-+. +..+|...|+|++.+.+.-....... .|
T Consensus 68 ~~~~~~~gl~~~~~~~-~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~-----------~~-- 132 (396)
T TIGR03492 68 LLRDLRAGLVGLTLGQ-WRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWES-----------GP-- 132 (396)
T ss_pred HHHHHHhhHHHHHHHH-HHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecC-----------CC--
Confidence 3332222 22222 233333333899999988554 88899999999999644322110000 00
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEeC
Q 011792 164 DENFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVG 243 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~vG 243 (477)
.....+.+..++|... .++ + ..... -..++.+++.+-. ..++.+..--++.+||
T Consensus 133 ~~~~~~~~~~~~G~~~-----------------~p~-e-~n~l~--~~~a~~v~~~~~~-----t~~~l~~~g~k~~~vG 186 (396)
T TIGR03492 133 RRSPSDEYHRLEGSLY-----------------LPW-E-RWLMR--SRRCLAVFVRDRL-----TARDLRRQGVRASYLG 186 (396)
T ss_pred CCccchhhhccCCCcc-----------------CHH-H-HHHhh--chhhCEEeCCCHH-----HHHHHHHCCCeEEEeC
Confidence 0000001111122111 011 1 00111 1445556655522 1222333324899999
Q ss_pred ccccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhC----CCcE
Q 011792 244 PLHALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNS----GKGF 319 (477)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~ 319 (477)
-...+.- . . .... . + .+++++|.+--||....-...+..+++++... +..|
T Consensus 187 nPv~d~l-----------~-----~----~~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~ 241 (396)
T TIGR03492 187 NPMMDGL-----------E-----P----PERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVF 241 (396)
T ss_pred cCHHhcC-----------c-----c----cccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEE
Confidence 7665421 1 0 0000 1 1 23457888888988542223334555555443 4567
Q ss_pred EEEEecCCcCCCCCCCCCchhhHh-hh--------------cCCCceeeccC-HHHHHhcccccccccccCchhHHHHhh
Q 011792 320 LWVIRSDLIDGESGVGPVPAELDQ-GT--------------KERGCIVSWAP-QEEVLAHQAIGGFLTHSGWNSTLESMV 383 (477)
Q Consensus 320 i~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~nv~~~~~~p-~~~ll~~~~~~~~I~HGG~gs~~eal~ 383 (477)
++.+.+.... ..+...+.+ .. .+++.+..+.. -..++..+++ +|+-+|..| .|+..
T Consensus 242 v~~~~~~~~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~ 313 (396)
T TIGR03492 242 LAAIVPSLSL-----EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVG 313 (396)
T ss_pred EEEeCCCCCH-----HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHH
Confidence 7777322100 011010100 00 12345555544 4558888888 999999766 99999
Q ss_pred cCCceecCCccchhhhhHHHHhhhh----ceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011792 384 AGVPMICWPQVGDQQVNSRCVSEIW----KIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTV 443 (477)
Q Consensus 384 ~GvP~l~~P~~~DQ~~na~rv~~~~----G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~ 443 (477)
+|+|+|++|.-..|. |+... ++. |.++.+. ..+.+.|.+++.++++| ++..++..
T Consensus 314 lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~-~~~~~~l~~~l~~ll~d--~~~~~~~~ 372 (396)
T TIGR03492 314 LGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA-SKNPEQAAQVVRQLLAD--PELLERCR 372 (396)
T ss_pred hCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC-CCCHHHHHHHHHHHHcC--HHHHHHHH
Confidence 999999999876675 88655 322 6666664 45669999999999997 65544443
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=1.6e-08 Score=98.96 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=85.4
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHH---HH
Q 011792 287 RSVLYVSFGSFIK-LSGDQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEE---VL 361 (477)
Q Consensus 287 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---ll 361 (477)
++.+++..|+... ...+.+..++..+... +..+++.-.+. ....+. ....|+.+.+|+++.+ ++
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----------~~~~~~-~~~~~v~~~g~~~~~~~~~~~ 264 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP----------ARARLE-ARYPNVHFLGFLDGEELAAAY 264 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc----------hHHHHh-ccCCcEEEEeccCHHHHHHHH
Confidence 3456677787653 2334444444444332 23333333211 111111 2457899999999776 68
Q ss_pred hcccccccccccC----chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHH
Q 011792 362 AHQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDK 437 (477)
Q Consensus 362 ~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~ 437 (477)
..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|... ...+.+++.+++.+++.| ++
T Consensus 265 ~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~-~~~~~~~l~~~i~~l~~~--~~ 334 (364)
T cd03814 265 ASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLV-EPGDAEAFAAALAALLAD--PE 334 (364)
T ss_pred HhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEc-CCCCHHHHHHHHHHHHcC--HH
Confidence 77887 886654 478999999999999887553 44455 334788776 445788899999999997 55
Q ss_pred HHHHHHH
Q 011792 438 IMESTVQ 444 (477)
Q Consensus 438 ~~~~a~~ 444 (477)
.+++..+
T Consensus 335 ~~~~~~~ 341 (364)
T cd03814 335 LRRRMAA 341 (364)
T ss_pred HHHHHHH
Confidence 4444333
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.18 E-value=1.1e-07 Score=92.86 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=58.6
Q ss_pred cCCCceeeccCHHH---HHhccccccccc----ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT----HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDT 417 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~----HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 417 (477)
..++.+.+|+++.. ++..+++ +|+ ..|. .++.||+++|+|+|+.+.. .....+ +.-+.|...+ .
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~-~ 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFP-P 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEEC-C
Confidence 46888999998666 5777777 663 2344 4799999999999987643 345555 3334677663 3
Q ss_pred CCHHHHHHHHHHHHhH
Q 011792 418 CDRSTIEKLVRDLMDN 433 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~ 433 (477)
-+.+++.+++.++++|
T Consensus 314 ~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 314 GDAEDLAAALERLIDD 329 (359)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4689999999999986
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.17 E-value=1.4e-07 Score=96.13 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHHhCC-CcEEEEEecCCcCCCCCCCCCchhhHhh-hcCCCceeeccCHHH---HHh
Q 011792 288 SVLYVSFGSFIKLSGDQILEFWHGIVNSG-KGFLWVIRSDLIDGESGVGPVPAELDQG-TKERGCIVSWAPQEE---VLA 362 (477)
Q Consensus 288 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~~---ll~ 362 (477)
..+++..|+... ...+..++++++..+ .+++ .++. | .....+.+. ...++.+.+++++.+ ++.
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~------G---~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGD------G---PYREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeC------C---hHHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 345566687653 334566777776654 3444 3321 2 111222211 124788889998665 677
Q ss_pred cccccccccccC----chhHHHHhhcCCceecCCccchhhhhHHHHhhh---hceeeeccCCCCHHHHHHHHHHHHhHhH
Q 011792 363 HQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEI---WKIGFDMKDTCDRSTIEKLVRDLMDNKR 435 (477)
Q Consensus 363 ~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~---~G~G~~l~~~~~~~~l~~~v~~ll~~~~ 435 (477)
.+|+ +|.-.. ..++.||+++|+|+|+....+ ....+ +. -+.|...+ .-+.+++.+++.++++|
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~-- 400 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYT-PGDVDDCVEKLETLLAD-- 400 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeC-CCCHHHHHHHHHHHHhC--
Confidence 7777 774332 357899999999999876432 22233 32 36677664 34789999999999986
Q ss_pred HHHH
Q 011792 436 DKIM 439 (477)
Q Consensus 436 ~~~~ 439 (477)
++.+
T Consensus 401 ~~~~ 404 (465)
T PLN02871 401 PELR 404 (465)
T ss_pred HHHH
Confidence 5443
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.15 E-value=6.9e-08 Score=93.89 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=80.5
Q ss_pred CCcEEEEEecCccc-CCHHHHHHHHHHHHhCCCcE-EEEEecCCcCCCCCCCCCchh--h-HhhhcCCCceeeccC-HHH
Q 011792 286 SRSVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGF-LWVIRSDLIDGESGVGPVPAE--L-DQGTKERGCIVSWAP-QEE 359 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~nv~~~~~~p-~~~ 359 (477)
.++.+++..|+... ...+.+-..+..+...+..+ ++.++.. ........ . ......++.+.++.. ...
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~------~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDG------DEENPAAILEIEKLGLEGRVEFLGFRDDVPE 259 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCC------CcchhhHHHHHHhcCCcceEEEeeccccHHH
Confidence 34567888888753 33444444444444323333 2333221 10011110 0 011235777777754 445
Q ss_pred HHhcccccccccccC----chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhH
Q 011792 360 VLAHQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKR 435 (477)
Q Consensus 360 ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~ 435 (477)
++..+++ +|.-+. .+++.||+++|+|+|+.+... ....+ +..+.|... ..-+.+++.+++.+++.|
T Consensus 260 ~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i-~~~~~g~~~-~~~~~~~~~~~i~~l~~~-- 329 (359)
T cd03808 260 LLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAV-IDGVNGFLV-PPGDAEALADAIERLIED-- 329 (359)
T ss_pred HHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhh-hcCcceEEE-CCCCHHHHHHHHHHHHhC--
Confidence 8888887 765432 578999999999999865432 34444 324667665 345789999999999987
Q ss_pred HHHHHH
Q 011792 436 DKIMES 441 (477)
Q Consensus 436 ~~~~~~ 441 (477)
++..++
T Consensus 330 ~~~~~~ 335 (359)
T cd03808 330 PELRAR 335 (359)
T ss_pred HHHHHH
Confidence 544433
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.12 E-value=5.7e-08 Score=95.72 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCcEEEEEecCccc-CCHHHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhH----hhhcCCCceeeccCHHH
Q 011792 286 SRSVLYVSFGSFIK-LSGDQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELD----QGTKERGCIVSWAPQEE 359 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~nv~~~~~~p~~~ 359 (477)
.++.+++..|+... ...+.+...+..+... +.++++ ++. | .....+. ....+|+.+.+++++..
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~------~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 287 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGD------G---PEKEELKELAKALGLDNVTFLGRVPKEE 287 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCC------c---ccHHHHHHHHHHcCCCcEEEeCCCChHH
Confidence 34567777888754 3334444444444433 334333 321 1 1111111 12346889999998765
Q ss_pred ---HHhcccccccccccC---------chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHH
Q 011792 360 ---VLAHQAIGGFLTHSG---------WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLV 427 (477)
Q Consensus 360 ---ll~~~~~~~~I~HGG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v 427 (477)
++..+++ +|..+. -+++.||+++|+|+|+.+....+. .+.+ .+.|...+ .-+.+++.+++
T Consensus 288 ~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~-~~~~~~l~~~i 359 (394)
T cd03794 288 LPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVP-PGDPEALAAAI 359 (394)
T ss_pred HHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeC-CCCHHHHHHHH
Confidence 6777777 664322 234799999999999998765444 2212 25666653 34889999999
Q ss_pred HHHHhHhHHHHHHHHH
Q 011792 428 RDLMDNKRDKIMESTV 443 (477)
Q Consensus 428 ~~ll~~~~~~~~~~a~ 443 (477)
.++++| +..+++..
T Consensus 360 ~~~~~~--~~~~~~~~ 373 (394)
T cd03794 360 LELLDD--PEERAEMG 373 (394)
T ss_pred HHHHhC--hHHHHHHH
Confidence 999986 55444433
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=8.6e-09 Score=92.16 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=104.9
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhh--hcCCCceeeccC-HHHHHhcc
Q 011792 288 SVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQG--TKERGCIVSWAP-QEEVLAHQ 364 (477)
Q Consensus 288 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p-~~~ll~~~ 364 (477)
.-|+|++|.. .+..+..+++..+.+.++.+=++++ +.......+..+ ..+|+.+.-... -..|+..|
T Consensus 159 r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~g--------s~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 159 RDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVG--------SSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred heEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEec--------CCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 3489999876 3456778888888887766655553 212322322222 235666655555 33489888
Q ss_pred cccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011792 365 AIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 365 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
++ .|+-|| .|+.|++.-|+|.+++|+...|--.|... +.+|+-..+.-.++.......+..+.+| ...+++.-.
T Consensus 229 d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~l~~~~~~~~~~~i~~d--~~~rk~l~~ 302 (318)
T COG3980 229 DL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYHLKDLAKDYEILQIQKD--YARRKNLSF 302 (318)
T ss_pred ch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCCCchHHHHHHHHHhhhC--HHHhhhhhh
Confidence 87 888866 59999999999999999999999999999 4578888886458888888888888887 666666655
Q ss_pred HHHHH
Q 011792 445 IAKMA 449 (477)
Q Consensus 445 l~~~~ 449 (477)
-.+.+
T Consensus 303 ~~~~i 307 (318)
T COG3980 303 GSKLI 307 (318)
T ss_pred cccee
Confidence 55444
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.09 E-value=6.4e-07 Score=89.31 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=57.0
Q ss_pred cCCCceeeccCHHH---HHhccccccccc---ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT---HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.++|.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+... ......+ +.-..|... ...
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv-~~~ 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLV-DFF 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEc-CCC
Confidence 35788999999776 5667777 552 2233 489999999999998643 3444455 322356655 345
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
++++++++|.++++|
T Consensus 352 d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 DPDALAAAVIELLDD 366 (396)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999997
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=2.5e-07 Score=91.27 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=56.6
Q ss_pred cCCCceeeccCH-HHHHhccccccccc----ccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLT----HSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
.+++.+.++.++ ..++..+++ +|. -|...++.||+++|+|+|+... ...+..+ +.-..|... ..-+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~-~~~~~ 323 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLV-DVGDV 323 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEc-CCCCH
Confidence 357888888764 447888887 662 2334699999999999998644 3445555 322466555 34578
Q ss_pred HHHHHHHHHHHhH
Q 011792 421 STIEKLVRDLMDN 433 (477)
Q Consensus 421 ~~l~~~v~~ll~~ 433 (477)
+++.+++..+++|
T Consensus 324 ~~l~~~i~~l~~~ 336 (371)
T cd04962 324 EAMAEYALSLLED 336 (371)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.06 E-value=5.1e-07 Score=89.83 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=59.6
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
..|+.+.+|+|+.+ ++..+++ +|+. |-..++.||+++|+|+|+....+ ....+ +.-+.|...+ .-
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~-~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVD-PR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeC-CC
Confidence 36788999999876 5777777 7743 22368999999999999876433 44445 4346787774 34
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
+.+++.++|.++++|
T Consensus 354 ~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 DPEALAAALRRLLTD 368 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999986
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.01 E-value=1.2e-06 Score=85.23 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=62.6
Q ss_pred hcCCCceeeccCHHH---HHhccccccccc----ccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCC
Q 011792 345 TKERGCIVSWAPQEE---VLAHQAIGGFLT----HSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDT 417 (477)
Q Consensus 345 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 417 (477)
.+.++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......+ +..+.|... ..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~-~~ 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLV-PP 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEe-CC
Confidence 457899999997554 6777777 663 3556799999999999998765 3345555 324667666 34
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHH
Q 011792 418 CDRSTIEKLVRDLMDNKRDKIME 440 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~~~~~~~~ 440 (477)
.+.+++.+++.++++| +..++
T Consensus 326 ~~~~~l~~~i~~~~~~--~~~~~ 346 (374)
T cd03801 326 GDPEALAEAILRLLDD--PELRR 346 (374)
T ss_pred CCHHHHHHHHHHHHcC--hHHHH
Confidence 5689999999999987 54433
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.01 E-value=1.1e-06 Score=86.16 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=57.3
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+ +..+.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC-C
Confidence 46889999999765 6777887 6633 335789999999999998754 3344555 33367777752 2
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
+. ++.+++.++++|
T Consensus 330 ~~-~~~~~i~~l~~~ 343 (374)
T cd03817 330 DE-ALAEALLRLLQD 343 (374)
T ss_pred CH-HHHHHHHHHHhC
Confidence 22 899999999986
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.00 E-value=2.5e-06 Score=85.52 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCceeeccCHHH---HHhcccccccccccCc------hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCC
Q 011792 347 ERGCIVSWAPQEE---VLAHQAIGGFLTHSGW------NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDT 417 (477)
Q Consensus 347 ~nv~~~~~~p~~~---ll~~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 417 (477)
+|+.+.+|+|+.. ++..+++-++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+..+ .
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~-~ 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVE-P 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeC-C
Confidence 4788899998765 6778887334334322 2368999999999998653311 12223 3 5676663 4
Q ss_pred CCHHHHHHHHHHHHhH
Q 011792 418 CDRSTIEKLVRDLMDN 433 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~ 433 (477)
-+.++++++|.++++|
T Consensus 358 ~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 358 ESVEALVAAIAALARQ 373 (412)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5789999999999986
No 57
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=5.8e-07 Score=85.77 Aligned_cols=303 Identities=16% Similarity=0.161 Sum_probs=156.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc-chhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY-HDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
|||.+--.-. -|+..+..+.++|.++||+|.+.+-+.. ...+.+..+ +++..+...- ...
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg----------~~y~~iG~~g--------~~~ 61 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG----------IDYIVIGKHG--------DSL 61 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC----------CCeEEEcCCC--------CCH
Confidence 4555543333 4999999999999999999999886421 122222222 6666665211 112
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCCCC
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVTDE 165 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 165 (477)
...+..... ....+..++++. +||++|+-. ...+..+|..+|+|+|.+.=+........+ ..|...
T Consensus 62 ~~Kl~~~~~-R~~~l~~~~~~~--~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~L---------t~Pla~- 127 (335)
T PF04007_consen 62 YGKLLESIE-RQYKLLKLIKKF--KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRL---------TLPLAD- 127 (335)
T ss_pred HHHHHHHHH-HHHHHHHHHHhh--CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhcccee---------ehhcCC-
Confidence 222222222 233455555554 899999865 567888999999999997544222110000 000000
Q ss_pred CCCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhcCCceeEeCcc
Q 011792 166 NFDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVGPL 245 (477)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~~p~~~~vG~l 245 (477)
....| ..+ .......+- .+....-.+.+.|+- ++=+.
T Consensus 128 -----~i~~P------------~~~---------~~~~~~~~G--~~~~i~~y~G~~E~a---------------yl~~F 164 (335)
T PF04007_consen 128 -----VIITP------------EAI---------PKEFLKRFG--AKNQIRTYNGYKELA---------------YLHPF 164 (335)
T ss_pred -----eeECC------------ccc---------CHHHHHhcC--CcCCEEEECCeeeEE---------------eecCC
Confidence 00000 000 000000000 010111133333221 11111
Q ss_pred ccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCccc----CCHHHHHHHHHHHHhCCCcEEE
Q 011792 246 HALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIK----LSGDQILEFWHGIVNSGKGFLW 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~i~ 321 (477)
. .++++.+-++. .+++.|++-+-+... ...+.+..+++.+++.+..+|.
T Consensus 165 ~--------------------------Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ 217 (335)
T PF04007_consen 165 K--------------------------PDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVI 217 (335)
T ss_pred C--------------------------CChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEE
Confidence 1 12222223331 245677777766432 3345677889999888877444
Q ss_pred EEecCCcCCCCCCCCCchhhHhhhcCCCcee-eccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhh
Q 011792 322 VIRSDLIDGESGVGPVPAELDQGTKERGCIV-SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVN 400 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~n 400 (477)
..+.. .... ..++. ++.+. .-++-.+||.++++ ||+-|| ....||...|+|.|.+ +.++-...
T Consensus 218 ipr~~---------~~~~-~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~v 281 (335)
T PF04007_consen 218 IPRYE---------DQRE-LFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAV 281 (335)
T ss_pred ecCCc---------chhh-HHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhH
Confidence 43221 1111 11111 23333 45666689999998 998776 7788999999999975 22221122
Q ss_pred HHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 401 SRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 401 a~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
-..+.+ .|+-. ...+.+++.+.+.+.+.
T Consensus 282 d~~L~~-~Gll~---~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 282 DKYLIE-KGLLY---HSTDPDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHH-CCCeE---ecCCHHHHHHHHHHhhh
Confidence 233545 46522 44678888886655543
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.94 E-value=5.9e-07 Score=90.46 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=55.9
Q ss_pred HHHHhcccccccccc-----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 358 EEVLAHQAIGGFLTH-----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 358 ~~ll~~~~~~~~I~H-----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
..++..+++ ++.. ||..++.||+++|+|+|+.|...++.+....+.+ .|+++.. -+.+++.+++.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE---CCHHHHHHHHHHHhc
Confidence 347777776 4331 3445699999999999999998888887777633 5777665 378999999999999
Q ss_pred HhHHHHH
Q 011792 433 NKRDKIM 439 (477)
Q Consensus 433 ~~~~~~~ 439 (477)
| +..+
T Consensus 388 ~--~~~~ 392 (425)
T PRK05749 388 D--PDAR 392 (425)
T ss_pred C--HHHH
Confidence 7 5443
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.92 E-value=2.6e-06 Score=85.42 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=54.0
Q ss_pred CCCcee-eccCHHH---HHhccccccccc-c----c-C-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc
Q 011792 347 ERGCIV-SWAPQEE---VLAHQAIGGFLT-H----S-G-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 347 ~nv~~~-~~~p~~~---ll~~~~~~~~I~-H----G-G-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 415 (477)
+|+.+. +|+|..+ +|..+++ +|. + | | -.++.||+++|+|+|+... ......+ +.-+.|...+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEEC
Confidence 355554 6888666 5777887 652 1 1 2 3479999999999998654 2344445 4346787773
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011792 416 DTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 416 ~~~~~~~l~~~v~~ll~~ 433 (477)
+.+++++++..+++|
T Consensus 367 ---d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 ---DSEELAEQLIDLLSN 381 (415)
T ss_pred ---CHHHHHHHHHHHHhc
Confidence 899999999999986
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.91 E-value=7.1e-06 Score=80.10 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=79.9
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHh-----hhcCCCceeeccCHHH-
Q 011792 287 RSVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQ-----GTKERGCIVSWAPQEE- 359 (477)
Q Consensus 287 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~p~~~- 359 (477)
+..+++..|+... ...+.+-..+..+...+..+.+.+.+. +. ....+.+ ...+|+.+.+++++.+
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~-----~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGD-----GP---LREALEALAAELGLEDRVTFLGAVPHEEV 272 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcC-----Cc---chHHHHHHHHhcCCcceEEEeCCCCHHHH
Confidence 4567777887754 223333333444433333454444332 11 1111111 1346889999999754
Q ss_pred --HHhcccccccc----cccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 360 --VLAHQAIGGFL----THSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 360 --ll~~~~~~~~I----~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+ +..+.|... ..-+.+++.+++.+++++
T Consensus 273 ~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~-~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 273 PAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLV-PPGDPEALAEAILRLLAD 344 (377)
T ss_pred HHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEE-CCCCHHHHHHHHHHHhcC
Confidence 6777777 55 234567899999999999986543 334445 334556655 456899999999999997
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.89 E-value=1.2e-05 Score=80.37 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred cCCCceeeccCHHH---HHhccccccccc---ccC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT---HSG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.+++.+.+++|+.+ +|..+++ +|. +.| ..++.||+++|+|+|+.... .....+ +.-+.|...+ .-
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~-~~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVD-GH 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECC-CC
Confidence 35788999998654 6888887 653 233 45899999999999987543 333344 3335676663 35
Q ss_pred CHHHHHHHHHHHHhHhHHHHHH
Q 011792 419 DRSTIEKLVRDLMDNKRDKIME 440 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~~~~~~~~ 440 (477)
+.+++.+++.++++| +..++
T Consensus 354 d~~~la~~i~~~l~~--~~~~~ 373 (405)
T TIGR03449 354 DPADWADALARLLDD--PRTRI 373 (405)
T ss_pred CHHHHHHHHHHHHhC--HHHHH
Confidence 889999999999986 54433
No 62
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.89 E-value=3.8e-06 Score=82.22 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=56.7
Q ss_pred cCCCceeeccCHHH---HHhccccccccccc----CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTHS----GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.+++.+.+|+++.+ ++..+++ +|.-. -..++.||+++|+|+|+.+. ......+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 56888999999655 5777777 55422 24689999999999999753 3344444 33 66766643
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
+.+++.+++.++++|
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 459999999999997
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.89 E-value=3.1e-06 Score=83.08 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=56.9
Q ss_pred hcCCCceeeccC-HH---HHHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 345 TKERGCIVSWAP-QE---EVLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 345 ~~~nv~~~~~~p-~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ..-+.|..+ .
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~-~ 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLA-K 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEe-C
Confidence 345788889998 44 36777777 7764 3357999999999999976532 222333 222456555 3
Q ss_pred CCCHHHHHHHHHHHHhH
Q 011792 417 TCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~ 433 (477)
..+.+++.+++.++++|
T Consensus 314 ~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD 330 (365)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45789999999999987
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.84 E-value=9.4e-06 Score=78.41 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=61.6
Q ss_pred cCCCceeeccC-HHHHHhccccccccccc----CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhc-eeeeccCCCC
Q 011792 346 KERGCIVSWAP-QEEVLAHQAIGGFLTHS----GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWK-IGFDMKDTCD 419 (477)
Q Consensus 346 ~~nv~~~~~~p-~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~ 419 (477)
..++.+.++.. -..++..+++ +|.-+ ..+++.||+++|+|+|+.+....+. .+.+ .| .|... ...+
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~-~~~~ 305 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLV-PNGD 305 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEe-CCCC
Confidence 34666667633 4458888887 66554 2578999999999999876544332 2323 24 77666 3457
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQIA 446 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~l~ 446 (477)
.+++.+++.++++| ++.+++..+-+
T Consensus 306 ~~~~~~~i~~ll~~--~~~~~~~~~~~ 330 (348)
T cd03820 306 VEALAEALLRLMED--EELRKRMGANA 330 (348)
T ss_pred HHHHHHHHHHHHcC--HHHHHHHHHHH
Confidence 89999999999997 66555544443
No 65
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.84 E-value=4e-07 Score=89.71 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCceeeccCHH---HHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHH
Q 011792 347 ERGCIVSWAPQE---EVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTI 423 (477)
Q Consensus 347 ~nv~~~~~~p~~---~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l 423 (477)
+++.+.+.+++. .++..+++ +|+-+|.. +.||+++|+|+|.++-..+++. +.+ .|.+..+. .++++|
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~--~d~~~i 324 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG--TDKENI 324 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC--CCHHHH
Confidence 578888776654 45667776 99987654 7999999999999976565553 223 47666553 589999
Q ss_pred HHHHHHHHhHhHHHHHHHHHH
Q 011792 424 EKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 424 ~~~v~~ll~~~~~~~~~~a~~ 444 (477)
.+++.++++| +..+++...
T Consensus 325 ~~ai~~ll~~--~~~~~~~~~ 343 (365)
T TIGR00236 325 TKAAKRLLTD--PDEYKKMSN 343 (365)
T ss_pred HHHHHHHHhC--hHHHHHhhh
Confidence 9999999987 665555443
No 66
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.81 E-value=6.7e-06 Score=80.90 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=59.5
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc----------cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceee
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH----------SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGF 412 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H----------GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 412 (477)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+..+ ++..+.+ -+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec-CCeeE
Confidence 56788889998765 5777777 5532 23579999999999999876543 4555533 46777
Q ss_pred eccCCCCHHHHHHHHHHHHhH
Q 011792 413 DMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 413 ~l~~~~~~~~l~~~v~~ll~~ 433 (477)
..+ .-+.+++.+++.++++|
T Consensus 317 ~~~-~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVP-EGDVAALAAALGRLLAD 336 (367)
T ss_pred EEC-CCCHHHHHHHHHHHHcC
Confidence 664 45789999999999997
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.80 E-value=4.7e-06 Score=81.49 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=79.6
Q ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHhCC-CcEEEEEecCCcCCCCCCCCCchhhH-----hhhcCCCceeeccCHHH-
Q 011792 287 RSVLYVSFGSFIKLSGDQILEFWHGIVNSG-KGFLWVIRSDLIDGESGVGPVPAELD-----QGTKERGCIVSWAPQEE- 359 (477)
Q Consensus 287 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nv~~~~~~p~~~- 359 (477)
+..+++..|.... ..-...+++++.... ..+++.-. | .....+. ....+||.+.+|+|+.+
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~-------g---~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGE-------G---PLEAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeC-------C---hhHHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 3456677787653 223455666666665 33333332 1 1111111 12346899999999754
Q ss_pred --HHhccccccccc---ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 360 --VLAHQAIGGFLT---HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 360 --ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
++..+++-++.+ +.|. .++.||+++|+|+|+..........-. + -+.|... ..-+.+++.++|.++++|
T Consensus 258 ~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~-~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 258 AALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVV-PPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEe-CCCCHHHHHHHHHHHHHC
Confidence 777788722222 2344 479999999999999765544432222 1 2566555 345899999999999997
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.79 E-value=4.5e-07 Score=89.25 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCcEEEEEecCcccC-CHHHHHHHHHHHHhCCC-cEEEEEecCCcCCCCCCCCCchhhHh---hh---cCCCceeeccCH
Q 011792 286 SRSVLYVSFGSFIKL-SGDQILEFWHGIVNSGK-GFLWVIRSDLIDGESGVGPVPAELDQ---GT---KERGCIVSWAPQ 357 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~~~~p~ 357 (477)
+++.|++++|..... ....+..++++++.... ++++..... + .....+.+ +. .+|+.+.++.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~-----~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH-----P---RTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC-----C---ChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 456788888876543 34557778888776543 244443221 0 11112211 11 357777776665
Q ss_pred HH---HHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 358 EE---VLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 358 ~~---ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.. ++..+++ ||+-+| |.+.|++++|+|+|+++...+ +..+.+ .|+++.+.. +.++|.+++.+++++
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecCC--CHHHHHHHHHHHhcC
Confidence 43 5666777 999999 788899999999999874322 223334 587766632 589999999999997
No 69
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.78 E-value=1e-05 Score=80.43 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=56.6
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc---cC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.+||.+.+++|+.. ++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+.+ -+.|...+ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeC--C
Confidence 46899999999764 6777777 6532 22 35789999999999987443 23334433 35666653 3
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
+.+++++++.++++|
T Consensus 350 ~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 TPEEFAEAMLKLAND 364 (392)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999987
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.77 E-value=1.2e-05 Score=81.13 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=56.4
Q ss_pred cCCCceeeccCHHHH---Hhcc--ccccccccc---C-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 346 KERGCIVSWAPQEEV---LAHQ--AIGGFLTHS---G-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 346 ~~nv~~~~~~p~~~l---l~~~--~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
.++|.+.+++++.++ +..+ ++++||.-+ | ..++.||+++|+|+|+.... .....+ +.-..|... .
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv-~ 389 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLV-D 389 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEe-C
Confidence 467778888887664 5544 123377654 4 45999999999999988643 233344 322356655 3
Q ss_pred CCCHHHHHHHHHHHHhH
Q 011792 417 TCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~ 433 (477)
.-++++++++|.++++|
T Consensus 390 ~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 390 VLDLEAIASALEDALSD 406 (439)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45889999999999997
No 71
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.77 E-value=1.6e-05 Score=77.82 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=55.5
Q ss_pred cCCCceee-ccCHHH---HHhccccccccc----c--cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc
Q 011792 346 KERGCIVS-WAPQEE---VLAHQAIGGFLT----H--SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 346 ~~nv~~~~-~~p~~~---ll~~~~~~~~I~----H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 415 (477)
.+|+.+.+ |+|+.+ ++..+++ +|. - |..++++||+++|+|+|+.+..+ ...+.. .+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEc
Confidence 46777774 488654 6767776 662 2 33568999999999999987654 222323 36666553
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011792 416 DTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 416 ~~~~~~~l~~~v~~ll~~ 433 (477)
.-+.+++.+++.++++|
T Consensus 318 -~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 318 -PGDPAALAEAIRRLLAD 334 (366)
T ss_pred -CCCHHHHHHHHHHHHcC
Confidence 34689999999999986
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.76 E-value=1.5e-05 Score=79.57 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=54.6
Q ss_pred cCCCceeeccCHHH---HHhccccccccc---ccCch-hHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT---HSGWN-STLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 418 (477)
.+++.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+.+..+ ....+ + .|.+... . .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~-~~~~~~~-~-~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-P-PDMILLA-E-P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-e-CCceeec-C-C
Confidence 45688899998655 6767777 653 33444 9999999999999977643 22334 3 2444332 2 3
Q ss_pred CHHHHHHHHHHHHhH
Q 011792 419 DRSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~ 433 (477)
+.+++.+++.+++++
T Consensus 319 ~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 DVESIVRKLEEAISI 333 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999884
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.68 E-value=3.1e-05 Score=75.58 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=57.9
Q ss_pred cCCCceeeccCHHH---HHhccccccccc----------ccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceee
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT----------HSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGF 412 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~----------HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 412 (477)
++|+.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+... ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 56899999998655 6667777 555 234579999999999999875432 22334 4323776
Q ss_pred eccCCCCHHHHHHHHHHHHhH
Q 011792 413 DMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 413 ~l~~~~~~~~l~~~v~~ll~~ 433 (477)
..+ .-+.+++.+++.++++|
T Consensus 308 ~~~-~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVP-PGDPEALADAIERLLDD 327 (355)
T ss_pred EeC-CCCHHHHHHHHHHHHhC
Confidence 663 34899999999999987
No 74
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.68 E-value=9.3e-06 Score=78.70 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=75.1
Q ss_pred EEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhh--hcCCCceeeccCHHH---HHhcc
Q 011792 290 LYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQG--TKERGCIVSWAPQEE---VLAHQ 364 (477)
Q Consensus 290 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p~~~---ll~~~ 364 (477)
+.+..|.... ......++++++..+.++++.-.+... ........+. ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 4455566642 222345666777777666554422100 0111111111 247899999999764 57777
Q ss_pred ccccccc----ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 365 AIGGFLT----HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 365 ~~~~~I~----HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
++ +|. +-|. .++.||+++|+|+|+.... .....+ +.-..|...+. .+++.+++.+++..
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 77 442 2343 5899999999999987653 333344 42226766643 99999999998764
No 75
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.64 E-value=1.3e-05 Score=78.75 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHh-----hhcCCCceeeccCH--HH-
Q 011792 288 SVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQ-----GTKERGCIVSWAPQ--EE- 359 (477)
Q Consensus 288 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~p~--~~- 359 (477)
+.+++..|.........+..+++++......+-+.+-++ |. ..+.+.+ ..++++.+.+|+++ ..
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~-----g~---~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGD-----GS---DFEKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeC-----Cc---cHHHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 456677777643222334556666665433332222221 21 1111211 23568899999753 33
Q ss_pred --HHhcccccccccc----cCchhHHHHhhcCCceecCC-ccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 360 --VLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWP-QVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 360 --ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P-~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
.+..+++ +|.- |-..++.||+++|+|+|+.- ..+ ....+ +.-..|..+ ..-+.++++++|.++++
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv-~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELY-TPGNIDEFVGKLNKVIS 323 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEE-CCCCHHHHHHHHHHHHh
Confidence 3444566 6643 33579999999999999875 322 12233 432456655 34599999999999999
Q ss_pred H
Q 011792 433 N 433 (477)
Q Consensus 433 ~ 433 (477)
|
T Consensus 324 ~ 324 (359)
T PRK09922 324 G 324 (359)
T ss_pred C
Confidence 7
No 76
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.62 E-value=7.3e-05 Score=73.03 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCcEEEEEecCccc-CCHHHHHHHHHHHHhCCCcE-EEEEecCCcCCCCCCC-CCchhh---Hh--hhcCCCceeeccC-
Q 011792 286 SRSVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGF-LWVIRSDLIDGESGVG-PVPAEL---DQ--GTKERGCIVSWAP- 356 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~-~~~~~~---~~--~~~~nv~~~~~~p- 356 (477)
++..+++..|.... ...+.+-..+..+...+..+ ++.++.. ... ...... .+ ...+++.+.+|.+
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~------~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA------QGRRFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC------cccchHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 34466777787654 33444444555555533333 2333221 100 111110 01 2346788888854
Q ss_pred HHHHHhcccccccccc----cC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHH
Q 011792 357 QEEVLAHQAIGGFLTH----SG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLM 431 (477)
Q Consensus 357 ~~~ll~~~~~~~~I~H----GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll 431 (477)
...++..+++ +|.= -| ..++.||+++|+|+|+.... .....+ ..-+.|... ..-+.+++.+++..++
T Consensus 257 ~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~-~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 257 MPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLV-PPGDAEALAQALDQIL 328 (355)
T ss_pred HHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEe-CCCCHHHHHHHHHHHH
Confidence 3448888887 4432 23 35999999999999987542 233344 322467666 3458999999997665
Q ss_pred h
Q 011792 432 D 432 (477)
Q Consensus 432 ~ 432 (477)
.
T Consensus 329 ~ 329 (355)
T cd03819 329 S 329 (355)
T ss_pred h
Confidence 4
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.59 E-value=6.6e-05 Score=73.07 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=53.7
Q ss_pred cCCCceeeccC-HHHHHhcccccccccccC----chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAP-QEEVLAHQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p-~~~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
..++.+.++.. -..++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+ .. .|...+ .-+.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~-~~~~ 319 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVP-PGDP 319 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeC-CCCH
Confidence 34566665544 3458888887 775543 479999999999999854 33444455 32 444443 3478
Q ss_pred HHHHHHHHHHHhH
Q 011792 421 STIEKLVRDLMDN 433 (477)
Q Consensus 421 ~~l~~~v~~ll~~ 433 (477)
+++.+++.++++|
T Consensus 320 ~~l~~~i~~l~~~ 332 (365)
T cd03807 320 EALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999997
No 78
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.57 E-value=2.9e-05 Score=75.93 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=58.7
Q ss_pred cCCCceeeccCH-HHHHhccccccccccc----CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLTHS----GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
.+|+.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+ +..|..+. ..+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~g~~~~---~~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDSGLIVP---ISDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCCceEeC---CCCH
Confidence 357888887654 458888887 55432 257899999999999974 444555555 33344433 3589
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
Q 011792 421 STIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 421 ~~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
+++.+++.+++++. +.+++....
T Consensus 314 ~~~~~~i~~ll~~~-~~~~~~~~~ 336 (360)
T cd04951 314 EALANKIDEILKMS-GEERDIIGA 336 (360)
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHH
Confidence 99999999998521 444444433
No 79
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.55 E-value=3e-05 Score=74.78 Aligned_cols=145 Identities=11% Similarity=0.046 Sum_probs=87.7
Q ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHhCCCc-EEEEEecCCcCCCCCCCCCchhhHhhhcC--CCceeeccCHHHHHhc
Q 011792 287 RSVLYVSFGSFIKLSGDQILEFWHGIVNSGKG-FLWVIRSDLIDGESGVGPVPAELDQGTKE--RGCIVSWAPQEEVLAH 363 (477)
Q Consensus 287 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--nv~~~~~~p~~~ll~~ 363 (477)
+++|.+--||...--...+..++++...+..+ .++.+... . .. +.+.+...+ .+.+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a-------~-~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF-------F-KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC-------C-cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 36899999998642235555455555544322 23333211 0 11 222221211 222232 33458888
Q ss_pred ccccccccccCchhHHHHhhcCCceecCCcc--chhhhhHHHHhh--hhceeeec-------------c-CCCCHHHHHH
Q 011792 364 QAIGGFLTHSGWNSTLESMVAGVPMICWPQV--GDQQVNSRCVSE--IWKIGFDM-------------K-DTCDRSTIEK 425 (477)
Q Consensus 364 ~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~--~DQ~~na~rv~~--~~G~G~~l-------------~-~~~~~~~l~~ 425 (477)
+++ +|+-+|..|+ |+..+|+|+|+ +.. .=|+.||.++.+ ..|+.--+ - +++|++.|.+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 887 9999999999 99999999998 543 457788988851 23443333 2 4799999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHH
Q 011792 426 LVRDLMDNKRDKIMESTVQIAKMA 449 (477)
Q Consensus 426 ~v~~ll~~~~~~~~~~a~~l~~~~ 449 (477)
++.+. .. +++++..+++.+.+
T Consensus 312 ~i~~~-~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 312 AYKEM-DR--EKFFKKSKELREYL 332 (347)
T ss_pred HHHHH-HH--HHHHHHHHHHHHHh
Confidence 99882 32 56666666666665
No 80
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.54 E-value=4.7e-05 Score=73.54 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=53.3
Q ss_pred cCCCceeeccCH-HHHHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
.+++.+.++.+. ..++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +.-+.|... ..-+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~-~~~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLV-PVGDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEE-CCCCH
Confidence 457888888764 358888887 6632 3356899999999999986443 445555 334677766 44577
Q ss_pred HHH---HHHHHHHHhH
Q 011792 421 STI---EKLVRDLMDN 433 (477)
Q Consensus 421 ~~l---~~~v~~ll~~ 433 (477)
+.+ .+++.+++.+
T Consensus 317 ~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 317 AALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHHhccCC
Confidence 777 4555555555
No 81
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.50 E-value=0.00059 Score=73.88 Aligned_cols=90 Identities=16% Similarity=0.237 Sum_probs=58.8
Q ss_pred cCCCceeeccCHHH---HHhccc--ccccccc---cCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 346 KERGCIVSWAPQEE---VLAHQA--IGGFLTH---SGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~--~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
.++|.+.+++++.+ ++..++ .++||.- =|+ .++.||+++|+|+|+....+ ....+ +.-.-|+.+ .
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV-d 620 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV-D 620 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE-C
Confidence 35678888888766 454442 1237663 343 58999999999999986432 22223 222346655 3
Q ss_pred CCCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011792 417 TCDRSTIEKLVRDLMDNKRDKIMESTV 443 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~~~~~~~~~a~ 443 (477)
..+++.|+++|.++++| +..+++..
T Consensus 621 P~D~eaLA~AL~~LL~D--pelr~~m~ 645 (1050)
T TIGR02468 621 PHDQQAIADALLKLVAD--KQLWAECR 645 (1050)
T ss_pred CCCHHHHHHHHHHHhhC--HHHHHHHH
Confidence 46899999999999997 55444433
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.46 E-value=0.0013 Score=69.56 Aligned_cols=134 Identities=16% Similarity=0.037 Sum_probs=71.7
Q ss_pred CCEEEEEcCCC-------------CCCHHHHHHHHHH--------HHhCCC----eEEEEeCCccchhccCCCccccccc
Q 011792 6 VPHVVLLPFPA-------------YGHIKPMLSLAKL--------FSHAGF----RITFVNTDQYHDRLFGNTDVTAFYK 60 (477)
Q Consensus 6 ~~~il~~~~~~-------------~GHv~p~l~La~~--------L~~rGH----~Vt~~~~~~~~~~l~~~~~~~~~~~ 60 (477)
.+||++++.-+ -|+..=.+.+|++ |+++|| +|+++|-......-...........
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 48898877755 3555556777776 578999 7779886321110000000001223
Q ss_pred CCCCeEEEeCCCCCCCCC-CCCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEE
Q 011792 61 HFPNFLCTSIPDGLPPDN-PRFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITF 137 (477)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~ 137 (477)
..++.....+|-+-.... ......-..++..+-.......+.+..+...+||+|++..... .|..+++.+|||.+..
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 345677777774332210 0011112223333332222223333333334899999988665 5788999999998775
Q ss_pred cc
Q 011792 138 RP 139 (477)
Q Consensus 138 ~~ 139 (477)
..
T Consensus 415 ~H 416 (784)
T TIGR02470 415 AH 416 (784)
T ss_pred CC
Confidence 43
No 83
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=70.84 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=81.8
Q ss_pred cEEEEEecCcccCCHHH-----HHHHHHHHHhCCC-cEEEEEecCCcCCCCCCCCCchhhHhh-hcCCCce--eeccCH-
Q 011792 288 SVLYVSFGSFIKLSGDQ-----ILEFWHGIVNSGK-GFLWVIRSDLIDGESGVGPVPAELDQG-TKERGCI--VSWAPQ- 357 (477)
Q Consensus 288 ~~v~vs~Gs~~~~~~~~-----~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~--~~~~p~- 357 (477)
..+|||.||... +++ ...+.+.+.+.|. ++|++++.... ..+....+. ..+.+.+ .+|-|-
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCccH
Confidence 479999999873 222 2346677777775 67888854310 122211111 1122333 477885
Q ss_pred HHHHhcccccccccccCchhHHHHhhcCCceecCC----ccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHH
Q 011792 358 EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWP----QVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDL 430 (477)
Q Consensus 358 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P----~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~l 430 (477)
....+.+++ ||.|+|.||++|.|+.|+|.|+++ +-..|-.-|..+++ .|.=.. +++.+|.+.++++
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~----C~ps~L~~~L~~~ 144 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYY----CTPSTLPAGLAKL 144 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEE----eeccchHHHHHhh
Confidence 556666777 999999999999999999999998 35678899988865 465432 3344444444433
No 84
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.43 E-value=7.7e-05 Score=72.88 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=61.0
Q ss_pred hcCCCceeeccCHHH---HHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCC
Q 011792 345 TKERGCIVSWAPQEE---VLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDT 417 (477)
Q Consensus 345 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 417 (477)
..+++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ... |..+. .
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~-~ 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFD-P 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeC-C
Confidence 457888999998764 6777777 5532 3356899999999999986542 122223 222 33332 2
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 011792 418 CDRSTIEKLVRDLMDNKRDKIMESTVQIAK 447 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~ 447 (477)
-+.+++.+++.++++| +..+.+..+-+.
T Consensus 321 ~~~~~~~~~i~~l~~~--~~~~~~~~~~~~ 348 (365)
T cd03809 321 LDPEALAAAIERLLED--PALREELRERGL 348 (365)
T ss_pred CCHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 4889999999999987 666555554443
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.40 E-value=0.00041 Score=68.49 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCceee-ccCHHHH---Hhccccccccc-c-----cC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc
Q 011792 347 ERGCIVS-WAPQEEV---LAHQAIGGFLT-H-----SG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 347 ~nv~~~~-~~p~~~l---l~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 415 (477)
+|+.+.. |+|+.++ |..+|+ +|. + -| -+++.||+++|+|+|+... ..+...+ +.-+.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 4566654 7887664 878887 663 1 12 3579999999999999743 2344455 4335788774
Q ss_pred CCCCHHHHHHHHHHHH
Q 011792 416 DTCDRSTIEKLVRDLM 431 (477)
Q Consensus 416 ~~~~~~~l~~~v~~ll 431 (477)
+++++++++.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5899999998875
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.40 E-value=0.00024 Score=69.57 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=49.7
Q ss_pred hcCCCceeeccCHHH---HHhcccccccccccCc-----hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 345 TKERGCIVSWAPQEE---VLAHQAIGGFLTHSGW-----NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 345 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~HGG~-----gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
..++|.+.+++++.+ ++..+++ ++-++-. +++.||+++|+|+|+..... +...+ +.-|. ..+
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~~g~--~~~- 315 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GDKAI--YFK- 315 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cCCee--Eec-
Confidence 346899999999875 4555565 5554332 57999999999999875432 22222 22233 222
Q ss_pred CCCHHHHHHHHHHHHhH
Q 011792 417 TCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~ 433 (477)
..+.+.+++.++++|
T Consensus 316 --~~~~l~~~i~~l~~~ 330 (363)
T cd04955 316 --VGDDLASLLEELEAD 330 (363)
T ss_pred --CchHHHHHHHHHHhC
Confidence 112299999999987
No 87
>PLN00142 sucrose synthase
Probab=98.38 E-value=0.00046 Score=72.99 Aligned_cols=117 Identities=14% Similarity=-0.020 Sum_probs=60.4
Q ss_pred HHHHHHHhCCCeEE----EEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHHH
Q 011792 25 SLAKLFSHAGFRIT----FVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLAF 100 (477)
Q Consensus 25 ~La~~L~~rGH~Vt----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (477)
.|+++|+++||+|+ ++|--.....-.............++.....+|-+-..........-..++..+-.......
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~ 398 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAA 398 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence 35678899999875 77642110100000000012233345777777743321111011111223333322222233
Q ss_pred HHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCc
Q 011792 101 RQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 101 ~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 141 (477)
+.+..+...+||+|.+..... .|..+++.+|||.+....+.
T Consensus 399 ~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL 441 (815)
T PLN00142 399 SEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHAL 441 (815)
T ss_pred HHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccc
Confidence 333343333899999998776 67889999999999875543
No 88
>PLN02949 transferase, transferring glycosyl groups
Probab=98.37 E-value=0.00073 Score=68.35 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=67.7
Q ss_pred cCCCceeeccCHHH---HHhccccccccc---ccCch-hHHHHhhcCCceecCCccchhhhhHHHHhhh-hc-eeeeccC
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLT---HSGWN-STLESMVAGVPMICWPQVGDQQVNSRCVSEI-WK-IGFDMKD 416 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~-~G-~G~~l~~ 416 (477)
.++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+--.+ .+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC--
Confidence 56889999998665 6767776 663 23444 79999999999999865431000 11010 02 23333
Q ss_pred CCCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011792 417 TCDRSTIEKLVRDLMDN---KRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 474 (477)
-+.+++++++.+++++ ....+.+++++-++.+... .....+.+.++.+..++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e-----~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQ-----RFNEDFKDAIRPILNSA 461 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHhhh
Confidence 2899999999999973 1123445555444333321 12233445555555554
No 89
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.37 E-value=0.0013 Score=65.27 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCcee-eccCHHH---HHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCC
Q 011792 348 RGCIV-SWAPQEE---VLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTC 418 (477)
Q Consensus 348 nv~~~-~~~p~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~ 418 (477)
++.+. +++++.+ ++..+++ +|.= |...++.||+++|+|+|+.... .....+ +.-+.|..++ ...
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCCCC
Confidence 35443 6777654 6777777 6642 2345779999999999987543 344445 3335677775 222
Q ss_pred C----HHHHHHHHHHHHhH
Q 011792 419 D----RSTIEKLVRDLMDN 433 (477)
Q Consensus 419 ~----~~~l~~~v~~ll~~ 433 (477)
+ .+++.+++.++++|
T Consensus 334 ~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 334 DADGFQAELAKAINILLAD 352 (388)
T ss_pred cccchHHHHHHHHHHHHhC
Confidence 1 28999999999986
No 90
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=0.00061 Score=65.62 Aligned_cols=306 Identities=17% Similarity=0.190 Sum_probs=169.3
Q ss_pred EcCCCCCCHHHHHHHHHHHHhC--CCeEEEEe-CCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHH
Q 011792 12 LPFPAYGHIKPMLSLAKLFSHA--GFRITFVN-TDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDW 88 (477)
Q Consensus 12 ~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (477)
+=.-+.|-++-.++|.++|.++ ++.+++-| ++.-.+.+.+.-+ +.+...-+| -+
T Consensus 54 iHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--------~~v~h~YlP----~D----------- 110 (419)
T COG1519 54 IHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--------DSVIHQYLP----LD----------- 110 (419)
T ss_pred EEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--------CCeEEEecC----cC-----------
Confidence 3334669999999999999999 88888877 3343444433222 112222222 11
Q ss_pred HHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchH--HHHHHHcCCCeEEEccCchhhHHHHhhhhhhhhcCCCCCCCCC
Q 011792 89 FCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFA--IDVAEELNIPIITFRPYSAYCSWSDFHFSKLAEEGELPVTDEN 166 (477)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (477)
....++.+++.+ +||++|.-....|. +.-++..|+|.+.+.- .
T Consensus 111 -------~~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa-------------R------------- 155 (419)
T COG1519 111 -------LPIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNA-------------R------------- 155 (419)
T ss_pred -------chHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEee-------------e-------------
Confidence 123455666666 89988877767754 5567788999998621 0
Q ss_pred CCCCceecCCCCCCCCCCCCCccccCCCCCChHHHHHHHhhhcccCCceEEEcChhhhchHHHHHhhhc-CCceeEeCcc
Q 011792 167 FDKPVTCIPELENIFRNRDLPSICRHGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSR-LTKIYTVGPL 245 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~p~l~~~~~~-~p~~~~vG~l 245 (477)
+.. +-+..+ . ....+.+.. ..+-+.++..|-.. .+.+... .+++...|-+
T Consensus 156 ----------LS~----rS~~~y----~----k~~~~~~~~--~~~i~li~aQse~D-----~~Rf~~LGa~~v~v~GNl 206 (419)
T COG1519 156 ----------LSD----RSFARY----A----KLKFLARLL--FKNIDLILAQSEED-----AQRFRSLGAKPVVVTGNL 206 (419)
T ss_pred ----------ech----hhhHHH----H----HHHHHHHHH--HHhcceeeecCHHH-----HHHHHhcCCcceEEecce
Confidence 110 000000 0 011111111 14556677766322 1112221 1457778877
Q ss_pred ccccccccccccccCCCCccCcccCccccccccccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCC--CcEEEEE
Q 011792 246 HALLKSRIQEDSVESSPLESNNCVLSKEDRSCMTWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSG--KGFLWVI 323 (477)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~ 323 (477)
-.+... .+ .. ...-+.+...++. ++ .+.|..+|+. ...+.+.....++.+.. ..+||+-
T Consensus 207 Kfd~~~---------~~-----~~-~~~~~~~r~~l~~--~r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVP 267 (419)
T COG1519 207 KFDIEP---------PP-----QL-AAELAALRRQLGG--HR-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVP 267 (419)
T ss_pred eecCCC---------Ch-----hh-HHHHHHHHHhcCC--CC-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEec
Confidence 655331 11 00 0011222233331 23 3556666643 45565666666666543 3445553
Q ss_pred ecCCcC--------CCCC------CCCCchhhHhhhcCCCceeeccC-HHHHHhcccc----cccccccCchhHHHHhhc
Q 011792 324 RSDLID--------GESG------VGPVPAELDQGTKERGCIVSWAP-QEEVLAHQAI----GGFLTHSGWNSTLESMVA 384 (477)
Q Consensus 324 ~~~~~~--------~~~~------~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~~----~~~I~HGG~gs~~eal~~ 384 (477)
+=+..- ..|. +...+. ...+|.+.+-+- ...++.-+++ +-++-+||+| ..|++++
T Consensus 268 RHpERf~~v~~l~~~~gl~~~~rS~~~~~~-----~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~ 341 (419)
T COG1519 268 RHPERFKAVENLLKRKGLSVTRRSQGDPPF-----SDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAF 341 (419)
T ss_pred CChhhHHHHHHHHHHcCCeEEeecCCCCCC-----CCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHc
Confidence 211000 0010 000010 112555555544 3335555554 3466799988 5799999
Q ss_pred CCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 385 GVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 385 GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
|+|+|.=|+...|.+-++++.+ .|+|+.++ +.+.+.+++..+++|
T Consensus 342 ~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~---~~~~l~~~v~~l~~~ 386 (419)
T COG1519 342 GTPVIFGPYTFNFSDIAERLLQ-AGAGLQVE---DADLLAKAVELLLAD 386 (419)
T ss_pred CCCEEeCCccccHHHHHHHHHh-cCCeEEEC---CHHHHHHHHHHhcCC
Confidence 9999999999999999999954 79999995 388888888888885
No 91
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.32 E-value=6.8e-05 Score=74.78 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred cCCCceeeccCHH-HHHhcccccccc--cc--cCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCC
Q 011792 346 KERGCIVSWAPQE-EVLAHQAIGGFL--TH--SGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCD 419 (477)
Q Consensus 346 ~~nv~~~~~~p~~-~ll~~~~~~~~I--~H--GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 419 (477)
..+|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+. +....|.|..+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEeC--CC
Confidence 3578889999853 47888887 65 22 454 3699999999999999764322 111236666663 58
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
++++++++.++++| +..+++ |++..++.+.+. .++....+-+++++
T Consensus 349 ~~~la~ai~~ll~~--~~~~~~---~~~~ar~~v~~~-fsw~~~~~~~~~~l 394 (397)
T TIGR03087 349 PADFAAAILALLAN--PAEREE---LGQAARRRVLQH-YHWPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHHHcC--HHHHHH---HHHHHHHHHHHh-CCHHHHHHHHHHHh
Confidence 99999999999987 543333 333333322222 33455444455554
No 92
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.32 E-value=0.00044 Score=67.58 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=59.4
Q ss_pred cCCCceeeccCH-HHHHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
++++.+.++..+ ..++..+++ +|+- |-..++.||+++|+|+|+....+ ....+ +. +.|.... .-++
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~-~~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL-DESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-CCCH
Confidence 467888887543 458888887 5543 44579999999999999875543 33334 33 5554443 3458
Q ss_pred HHHHHHHHHHHhHhHHHHHHHH
Q 011792 421 STIEKLVRDLMDNKRDKIMEST 442 (477)
Q Consensus 421 ~~l~~~v~~ll~~~~~~~~~~a 442 (477)
++++++|.++++| +..+++.
T Consensus 319 ~~~a~~i~~l~~~--~~~~~~~ 338 (358)
T cd03812 319 EIWAEEILKLKSE--DRRERSS 338 (358)
T ss_pred HHHHHHHHHHHhC--cchhhhh
Confidence 9999999999998 6544433
No 93
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.26 E-value=0.00057 Score=69.66 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=71.7
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCch---hhHhhhcCCCce-eeccCHH--H
Q 011792 287 RSVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPA---ELDQGTKERGCI-VSWAPQE--E 359 (477)
Q Consensus 287 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~nv~~-~~~~p~~--~ 359 (477)
+..+++..|.... ...+.+...+..+...+.++++.-. |.. .... .+.++.+.++.+ .+|-... .
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~-------g~~-~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGT-------GDP-ELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEec-------CcH-HHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 3456677787763 2233333333333333566655532 110 0111 122234456544 4663222 4
Q ss_pred HHhccccccccc---ccCch-hHHHHhhcCCceecCCccc--hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 360 VLAHQAIGGFLT---HSGWN-STLESMVAGVPMICWPQVG--DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 360 ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
++..+++ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...-.+ -+.|...+ .-+++++.+++.++++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~-~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFD-DFNAEDLLRALRRALE 427 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeC-CCCHHHHHHHHHHHHH
Confidence 6778887 664 34555 8889999999999875422 21100000011 26677763 4588999999999986
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.24 E-value=0.0019 Score=64.83 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=54.0
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc---cC-chhHHHHhhcCCceecCCccchhhhhHHHHhh---hhceeeecc
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSE---IWKIGFDMK 415 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~---~~G~G~~l~ 415 (477)
.++|.+.+++|+.+ +|..+++ +|+- -| .-++.||+++|+|+|+.-..+.-. ..+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---hee-eccCCCCceEEe-
Confidence 46888999999765 6777776 5542 12 248899999999999865432111 112 2 12466654
Q ss_pred CCCCHHHHHHHHHHHHhH
Q 011792 416 DTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 416 ~~~~~~~l~~~v~~ll~~ 433 (477)
.+++++++++.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999985
No 95
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.20 E-value=0.00017 Score=70.70 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCcEEEEEecCcc--c-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhh--cCCCceeeccC---H
Q 011792 286 SRSVLYVSFGSFI--K-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGT--KERGCIVSWAP---Q 357 (477)
Q Consensus 286 ~~~~v~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p---~ 357 (477)
+++.|++++=-.. + ...+.+..+++++...+.++++...... + +.+ .....+.+-. .+|+.+.+.++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p--~~~-~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A--GSR-IINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C--Cch-HHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3467778875433 3 4567789999999887766655542210 1 100 0111111111 35788886655 4
Q ss_pred HHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 358 EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 358 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
..+++++++ +|+.++.|- .||.+.|+|+|.+- +-+ .-+ + .|-.+.+ =..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~-vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVID-VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEE-eCCCHHHHHHHHHHHhC
Confidence 457878887 999876655 99999999999774 211 111 2 2433331 14688999999999654
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.06 E-value=0.0001 Score=71.51 Aligned_cols=142 Identities=10% Similarity=0.106 Sum_probs=79.7
Q ss_pred CCCcEEEEEecCcccCC-H---HHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCH--
Q 011792 285 PSRSVLYVSFGSFIKLS-G---DQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQ-- 357 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~-- 357 (477)
..++.+++++=...... + ..+..+++++... +.++||.+..... +. ..+.. ..++. +|+++...+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~---~~-~~i~~-~l~~~-~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR---GS-DIIIE-KLKKY-DNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH---HH-HHHHH-HHTT--TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch---HH-HHHHH-Hhccc-CCEEEECCCCHHH
Confidence 46789999985555444 3 3455566666665 6678888841100 00 01111 11122 48888866664
Q ss_pred -HHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHH
Q 011792 358 -EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRD 436 (477)
Q Consensus 358 -~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~ 436 (477)
..+|.++++ +|+.+| |-.-||.++|+|+|.+ -|+...=.-+ . .|-.+-. . .+.++|.+++.+++.+ .
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvlv-~-~~~~~I~~ai~~~l~~--~ 319 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVLV-G-TDPEAIIQAIEKALSD--K 319 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEEE-T-SSHHHHHHHHHHHHH---H
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEEe-C-CCHHHHHHHHHHHHhC--h
Confidence 457888887 999999 4444999999999999 2222222222 2 3555543 2 7899999999999986 4
Q ss_pred HHHHHHHH
Q 011792 437 KIMESTVQ 444 (477)
Q Consensus 437 ~~~~~a~~ 444 (477)
.+.++...
T Consensus 320 ~~~~~~~~ 327 (346)
T PF02350_consen 320 DFYRKLKN 327 (346)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhcc
Confidence 55555444
No 97
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.02 E-value=0.0049 Score=61.83 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=50.7
Q ss_pred eeeccCHHHHHhccccccccccc----CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHH
Q 011792 351 IVSWAPQEEVLAHQAIGGFLTHS----GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKL 426 (477)
Q Consensus 351 ~~~~~p~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~ 426 (477)
+.++.+...++...++ ||.=+ =..++.||+++|+|+|+.-... + ..+ ..-+-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec---CCHHHHHHH
Confidence 4466677779988887 88763 3578999999999999986443 2 223 222444344 378899999
Q ss_pred HHHHHhH
Q 011792 427 VRDLMDN 433 (477)
Q Consensus 427 v~~ll~~ 433 (477)
+.++|.+
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999984
No 98
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.01 E-value=0.012 Score=57.98 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=54.3
Q ss_pred CCCceeeccC-HHHHHhcccccccc--cc--cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHH
Q 011792 347 ERGCIVSWAP-QEEVLAHQAIGGFL--TH--SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRS 421 (477)
Q Consensus 347 ~nv~~~~~~p-~~~ll~~~~~~~~I--~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 421 (477)
.++.+.++.. -..++..+++ +| ++ |-..++.||+++|+|+|+.... .+...+ +.-..|..+ ..-+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~-~~~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALV-PPGDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEe-CCCCHH
Confidence 4555666544 3458888887 66 22 3357999999999999997653 234444 322356555 345789
Q ss_pred HHHHHHHHHHhH
Q 011792 422 TIEKLVRDLMDN 433 (477)
Q Consensus 422 ~l~~~v~~ll~~ 433 (477)
++++++.++++|
T Consensus 327 ~la~~i~~l~~~ 338 (374)
T TIGR03088 327 ALARALQPYVSD 338 (374)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 99
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.01 E-value=0.017 Score=57.05 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCCceeeccCHHH---HHhcccccccc------cccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 347 ERGCIVSWAPQEE---VLAHQAIGGFL------THSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 347 ~nv~~~~~~p~~~---ll~~~~~~~~I------~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
+||.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEeC
Confidence 7999999999776 56677772221 23333 458999999999998763 1222 2223 333322
Q ss_pred CCCHHHHHHHHHHHHhH
Q 011792 417 TCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~ 433 (477)
-+.+++.++|.+++.+
T Consensus 325 -~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 -DDPEEFVAAIEKALLE 340 (373)
T ss_pred -CCHHHHHHHHHHHHhc
Confidence 3899999999998764
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.015 Score=61.52 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred cCCCceeeccCH-HHHHhccccccccc---ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCC
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLT---HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCD 419 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~ 419 (477)
.++|.+.+|.++ ..++..+++ +|. +.|+ +++.||+++|+|+|+.... .....| +.-..|..++ .+.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCCCCC
Confidence 467888898874 347888887 654 5554 7999999999999997643 233445 4223577776 4566
Q ss_pred HHHHHHHHHHHHh----HhHHHHHHHHHHHH
Q 011792 420 RSTIEKLVRDLMD----NKRDKIMESTVQIA 446 (477)
Q Consensus 420 ~~~l~~~v~~ll~----~~~~~~~~~a~~l~ 446 (477)
.+++.+++.+++. + +.+++++++..
T Consensus 646 ~~~La~aL~~ll~~l~~~--~~l~~~ar~~a 674 (694)
T PRK15179 646 APDVAEALARIHDMCAAD--PGIARKAADWA 674 (694)
T ss_pred hHHHHHHHHHHHhChhcc--HHHHHHHHHHH
Confidence 6677777766654 4 56666555443
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.98 E-value=0.012 Score=58.13 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=54.5
Q ss_pred cCCCceeecc--CHH---HHHhccccccccccc---C-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 346 KERGCIVSWA--PQE---EVLAHQAIGGFLTHS---G-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 346 ~~nv~~~~~~--p~~---~ll~~~~~~~~I~HG---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
.+++.+.++. ++. .++..+++ ++.-+ | ..++.||+++|+|+|+....+ ....+ ..-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-
Confidence 3567777776 433 36777777 77533 2 359999999999999876432 22334 3224565543
Q ss_pred CCCHHHHHHHHHHHHhHhHHHHHHH
Q 011792 417 TCDRSTIEKLVRDLMDNKRDKIMES 441 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~~~~~~~~~ 441 (477)
+.+.+..++.++++| ++.++.
T Consensus 323 --~~~~~a~~i~~ll~~--~~~~~~ 343 (372)
T cd03792 323 --TVEEAAVRILYLLRD--PELRRK 343 (372)
T ss_pred --CcHHHHHHHHHHHcC--HHHHHH
Confidence 567888899999986 544433
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.96 E-value=0.0044 Score=63.32 Aligned_cols=130 Identities=13% Similarity=0.101 Sum_probs=73.4
Q ss_pred cEEEEEecCccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCch---hhHhhhcCCCceeeccCHH---HH
Q 011792 288 SVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPA---ELDQGTKERGCIVSWAPQE---EV 360 (477)
Q Consensus 288 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~nv~~~~~~p~~---~l 360 (477)
..+++..|.... ...+.+...+..+.+.+.++++.-. |.. .... .+.++.+.++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~-------g~~-~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGT-------GDP-ELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECC-------CCH-HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 456677787764 3334443334444434555544432 210 1111 1222345667666555544 37
Q ss_pred Hhcccccccccc---cCch-hHHHHhhcCCceecCCccchhhhhHHHHhh-----hhceeeeccCCCCHHHHHHHHHHHH
Q 011792 361 LAHQAIGGFLTH---SGWN-STLESMVAGVPMICWPQVGDQQVNSRCVSE-----IWKIGFDMKDTCDRSTIEKLVRDLM 431 (477)
Q Consensus 361 l~~~~~~~~I~H---GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~-----~~G~G~~l~~~~~~~~l~~~v~~ll 431 (477)
+..+++ +|.= -|+| +.+||+++|+|.|+....+ ....|.. .-+.|... ...+++++.++|.+++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~-~~~d~~~la~~i~~~l 435 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLF-EEYDPGALLAALSRAL 435 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEe-CCCCHHHHHHHHHHHH
Confidence 777777 6642 3544 7889999999999875532 1112211 11667766 3468899999999998
Q ss_pred h
Q 011792 432 D 432 (477)
Q Consensus 432 ~ 432 (477)
.
T Consensus 436 ~ 436 (473)
T TIGR02095 436 R 436 (473)
T ss_pred H
Confidence 7
No 103
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.93 E-value=0.0026 Score=64.86 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=75.9
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHH--hC--CCcEEEEEecCCcCCCCCCCCCchhhHhhhc-CC---CceeeccC
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIV--NS--GKGFLWVIRSDLIDGESGVGPVPAELDQGTK-ER---GCIVSWAP 356 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~n---v~~~~~~p 356 (477)
+++++|-+-.||-..-=......++++.+ .. +.++++..... ...+.+.+... .+ +.++.--.
T Consensus 411 ~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~ 481 (608)
T PRK01021 411 SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQF 481 (608)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcc
Confidence 46688999999976422344455565555 32 34555543211 11111221111 11 12221101
Q ss_pred HHHHHhcccccccccccCchhHHHHhhcCCceecCCc-cchhhhhHHHHhh-----------hh--ceeeecc---CCCC
Q 011792 357 QEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ-VGDQQVNSRCVSE-----------IW--KIGFDMK---DTCD 419 (477)
Q Consensus 357 ~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~-~~DQ~~na~rv~~-----------~~--G~G~~l~---~~~~ 419 (477)
..+++..|++ .+.-+|. .++|+..+|+|||++=- ..=-+..++++.+ -+ .+=..+- +++|
T Consensus 482 ~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 482 RYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred hHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 2578888887 7777664 56899999999988532 1112233444432 01 1111122 3689
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHH
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
++.|.+++ ++|.| +..+++.++
T Consensus 559 pe~La~~l-~lL~d--~~~r~~~~~ 580 (608)
T PRK01021 559 PEEVAAAL-DILKT--SQSKEKQKD 580 (608)
T ss_pred HHHHHHHH-HHhcC--HHHHHHHHH
Confidence 99999997 77775 444433333
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.92 E-value=0.0038 Score=63.91 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=72.7
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchh---hHhhhcCCCceeeccCHH---H
Q 011792 287 RSVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAE---LDQGTKERGCIVSWAPQE---E 359 (477)
Q Consensus 287 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~nv~~~~~~p~~---~ 359 (477)
+..+++..|.+.. ...+.+...+..+...+.++++.-.++ . ..... +.++.++|+.+....++. .
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-------~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-------P-EYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-------H-HHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 3456677777763 333444444444444455555443211 0 11111 112235677765333433 3
Q ss_pred HHhcccccccccc---cCc-hhHHHHhhcCCceecCCccc--hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 360 VLAHQAIGGFLTH---SGW-NSTLESMVAGVPMICWPQVG--DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 360 ll~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
++..+++ +|.- -|+ -+.+||+++|+|+|+....+ |--.....-.+ -|.|...+ ..+++++.+++.+++++
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~-~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFE-GYNADALLAALRRALAL 442 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeC-CCCHHHHHHHHHHHHHH
Confidence 6777777 6643 233 47789999999999875432 11111100001 35787774 45789999999999863
No 105
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.66 E-value=0.0023 Score=63.39 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=71.6
Q ss_pred hcCCCceeeccCHHH---HHhcccccccccc----cCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccC
Q 011792 345 TKERGCIVSWAPQEE---VLAHQAIGGFLTH----SGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKD 416 (477)
Q Consensus 345 ~~~nv~~~~~~p~~~---ll~~~~~~~~I~H----GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 416 (477)
...++.+.+++|+.+ ++..+++ +|.- .|. .++.||+++|+|+|+.... .+...+ +.-..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeC
Confidence 346788889998655 5777887 6642 343 5778999999999997653 233344 32345765544
Q ss_pred CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 011792 417 TCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 417 ~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 472 (477)
..+.+++++++.++++| +..+ ++++..++...+. .++..+.+-.+++..
T Consensus 328 ~~d~~~la~~I~~ll~d--~~~~----~~~~~ar~~~~~~-fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 PMTSDSIISDINRTLAD--PELT----QIAEQAKDFVFSK-YSWEGVTQRFEEQIH 376 (380)
T ss_pred CCCHHHHHHHHHHHHcC--HHHH----HHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 56899999999999997 6543 3333333322222 334454444444443
No 106
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.0064 Score=58.23 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=89.8
Q ss_pred CCCcEEEEEecCcccCC---HHHHHHHHHHHHhC-CCcEEEEEecCCcCCCCCCCCCchhhHhhhc--CCCcee---ecc
Q 011792 285 PSRSVLYVSFGSFIKLS---GDQILEFWHGIVNS-GKGFLWVIRSDLIDGESGVGPVPAELDQGTK--ERGCIV---SWA 355 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~---~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~---~~~ 355 (477)
+++..+.+|+=-..+.. .+.+.++.+..+.. +..+|..+.... .+..-..+++. .|+.+. +|.
T Consensus 202 ~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~--------~v~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 202 KDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRP--------RVRELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred ccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCCh--------hhhHHHHHHhCCCCcEEEeCCcchH
Confidence 35568888764444433 22333444444444 445555553220 11111112222 346664 677
Q ss_pred CHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhH
Q 011792 356 PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKR 435 (477)
Q Consensus 356 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~ 435 (477)
+...++.++.+ ++|-+|. -.-||-..|+|++++=...++|. ++ + .|.-+.+ ..+.+.|.+++..++++
T Consensus 274 ~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lv--g~~~~~i~~~~~~ll~~-- 341 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILV--GTDEENILDAATELLED-- 341 (383)
T ss_pred HHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEe--CccHHHHHHHHHHHhhC--
Confidence 88889999887 9998764 56799999999999999989886 44 4 3555444 35779999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011792 436 DKIMESTVQIAKM 448 (477)
Q Consensus 436 ~~~~~~a~~l~~~ 448 (477)
+++.++......-
T Consensus 342 ~~~~~~m~~~~np 354 (383)
T COG0381 342 EEFYERMSNAKNP 354 (383)
T ss_pred hHHHHHHhcccCC
Confidence 6666654444333
No 107
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.64 E-value=0.0011 Score=66.30 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCCceeeccCHHH---HHhcccccccccccC----chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCC
Q 011792 347 ERGCIVSWAPQEE---VLAHQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCD 419 (477)
Q Consensus 347 ~nv~~~~~~p~~~---ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 419 (477)
.++.+.+|+++.+ ++..++++++|...- ..+++||+++|+|+|+... ......+ +..+.|..+....+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCCCC
Confidence 4678889999775 444444545765543 4689999999999998653 3344555 43237877765568
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKL 466 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 466 (477)
.+++.++|.++++| +..+ .+|++..++.+++.-+......++
T Consensus 364 ~~~la~~I~~ll~~--~~~~---~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 364 PNELVSSLSKFIDN--EEEY---QTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHHHhC--HHHH---HHHHHHHHHHHHHHcCHHHhHHHh
Confidence 99999999999986 4433 334444444433343333333333
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.61 E-value=0.0029 Score=62.89 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHh--hhcCCCceeeccCHHHHHh
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQ--GTKERGCIVSWAPQEEVLA 362 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~~ll~ 362 (477)
+++.++|.+|....+..++.++.-.+.+++.+.-.+|........ . ..+...+.+ -.++++.+.++.|+.+-|.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~---~-~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG---E-ARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH---H-HHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH---H-HHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 466899999999999999999999999999998888887543110 0 001111111 0145677788888665443
Q ss_pred ---ccccccc---ccccCchhHHHHhhcCCceecCCccc-hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhH
Q 011792 363 ---HQAIGGF---LTHSGWNSTLESMVAGVPMICWPQVG-DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKR 435 (477)
Q Consensus 363 ---~~~~~~~---I~HGG~gs~~eal~~GvP~l~~P~~~-DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~ 435 (477)
.+|+ + ...+|..|++|||+.|||+|.+|--. =....+..+ ..+|+.-.+. .+.++-.+...++-+|
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--~s~~eYv~~Av~La~D-- 430 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--DSEEEYVEIAVRLATD-- 430 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---SSHHHHHHHHHHHHH---
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC--CCHHHHHHHHHHHhCC--
Confidence 3444 4 35689999999999999999999422 222233344 3366664443 3556665555556666
Q ss_pred HHHHH
Q 011792 436 DKIME 440 (477)
Q Consensus 436 ~~~~~ 440 (477)
..+++
T Consensus 431 ~~~l~ 435 (468)
T PF13844_consen 431 PERLR 435 (468)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 109
>PLN02316 synthase/transferase
Probab=97.56 E-value=0.12 Score=56.66 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=64.8
Q ss_pred cCCCceeeccCHH---HHHhcccccccccc---cC-chhHHHHhhcCCceecCCccc--hhhhh-------HHHHhhhhc
Q 011792 346 KERGCIVSWAPQE---EVLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQVG--DQQVN-------SRCVSEIWK 409 (477)
Q Consensus 346 ~~nv~~~~~~p~~---~ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~--DQ~~n-------a~rv~~~~G 409 (477)
++++.+....+.. .+++.+|+ |+.- =| .-+.+||+++|+|.|+....+ |.-.. +... ..-+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~-g~~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQ-GLEP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccc-ccCC
Confidence 4567666444543 57877777 7743 23 358999999999988764422 21111 1100 0014
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 011792 410 IGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKL 466 (477)
Q Consensus 410 ~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 466 (477)
-|... ...+++.|..+|.+++.+ |.+..+.+++..++.++..-+-...+.+.
T Consensus 976 tGflf-~~~d~~aLa~AL~raL~~----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 976 NGFSF-DGADAAGVDYALNRAISA----WYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred ceEEe-CCCCHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 56666 456899999999999874 23334445555555544444433334443
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.52 E-value=0.003 Score=54.63 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=63.8
Q ss_pred hcCCCceeeccCHH---HHHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCC
Q 011792 345 TKERGCIVSWAPQE---EVLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDT 417 (477)
Q Consensus 345 ~~~nv~~~~~~p~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 417 (477)
..+++.+.+++++. .++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~~ 143 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDPN 143 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEESTT
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCCC
Confidence 35688899999833 37777777 7766 5667999999999999975 344455555 334568888643
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011792 418 CDRSTIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
+.+++.++|.+++++ ++.+++..+
T Consensus 144 -~~~~l~~~i~~~l~~--~~~~~~l~~ 167 (172)
T PF00534_consen 144 -DIEELADAIEKLLND--PELRQKLGK 167 (172)
T ss_dssp -SHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred -CHHHHHHHHHHHHCC--HHHHHHHHH
Confidence 999999999999998 654444433
No 111
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.52 E-value=0.0026 Score=63.53 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=57.7
Q ss_pred cCCCceeeccCHHH---HHhcccccccccc---------cCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceee
Q 011792 346 KERGCIVSWAPQEE---VLAHQAIGGFLTH---------SGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGF 412 (477)
Q Consensus 346 ~~nv~~~~~~p~~~---ll~~~~~~~~I~H---------GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 412 (477)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .+++||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 46788999999866 6767777 6642 344 57899999999999975432 33344 3223566
Q ss_pred eccCCCCHHHHHHHHHHHHh-H
Q 011792 413 DMKDTCDRSTIEKLVRDLMD-N 433 (477)
Q Consensus 413 ~l~~~~~~~~l~~~v~~ll~-~ 433 (477)
.. ..-+.++++++|.++++ |
T Consensus 351 lv-~~~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 351 LV-PENDAQALAQRLAAFSQLD 371 (406)
T ss_pred Ee-CCCCHHHHHHHHHHHHhCC
Confidence 55 34589999999999998 7
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.47 E-value=0.014 Score=56.81 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=90.2
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHh---C--CCcEEEEEecCCcCCCCCCCCCchhhH---hhhcCCCcee-ecc
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVN---S--GKGFLWVIRSDLIDGESGVGPVPAELD---QGTKERGCIV-SWA 355 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~-~~~ 355 (477)
.++++|.+--||-..-=...+..++++.+. . +.++++..... .....+. .....++.+. ..-
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~~~~~~ 252 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE---------VHEELIEEILAEYPPDVSIVIIEG 252 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH---------HHHHHHHHHHHhhCCCCeEEEcCC
Confidence 477899999999764222223334444332 2 34555554211 1111111 1112333332 222
Q ss_pred CHHHHHhcccccccccccCchhHHHHhhcCCceecCCcc-chhhhhHHHHhhhhce-e-----------eec-cCCCCHH
Q 011792 356 PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQV-GDQQVNSRCVSEIWKI-G-----------FDM-KDTCDRS 421 (477)
Q Consensus 356 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~-~DQ~~na~rv~~~~G~-G-----------~~l-~~~~~~~ 421 (477)
.-.+++..+++ .+.-+| ..|+|+..+|+|||++=-. .=-+..|+++++ ... | ..+ .+.+|++
T Consensus 253 ~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 253 ESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred chHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHH
Confidence 45558888887 666655 4678999999999887422 122334444432 121 1 111 1479999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHH
Q 011792 422 TIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYR 461 (477)
Q Consensus 422 ~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 461 (477)
.|.+++..+|.| +..++..+...+.+++..+.|.++..
T Consensus 329 ~i~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 329 NIAAELLELLEN--PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 999999999998 55566666666666666555665533
No 113
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0016 Score=52.07 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=68.0
Q ss_pred EEEEecCcccCCHHHHHH--HHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeecc--C-HHHHHhcc
Q 011792 290 LYVSFGSFIKLSGDQILE--FWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWA--P-QEEVLAHQ 364 (477)
Q Consensus 290 v~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--p-~~~ll~~~ 364 (477)
+|||.||....=...+.. +..-.+.-..++|+.++.. + ..|- ...++.+|. + -+.+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d--~kpv-------agl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------D--IKPV-------AGLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------C--cccc-------cccEEEeechHHHHHHHhhcc
Confidence 789999984211222222 3333333456889999542 1 2221 123555553 4 33455555
Q ss_pred cccccccccCchhHHHHhhcCCceecCCccc--------hhhhhHHHHhhhhceeeecc
Q 011792 365 AIGGFLTHSGWNSTLESMVAGVPMICWPQVG--------DQQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 365 ~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~rv~~~~G~G~~l~ 415 (477)
++ +|+|+|-||++.++..++|.|++|-.. .|-..|..+++ .+.=+...
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 65 999999999999999999999999533 47777888865 56655554
No 114
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.42 E-value=0.037 Score=56.71 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=61.7
Q ss_pred cCCCceeeccCHHHHHhccccccccc---ccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-C--CC
Q 011792 346 KERGCIVSWAPQEEVLAHQAIGGFLT---HSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-D--TC 418 (477)
Q Consensus 346 ~~nv~~~~~~p~~~ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~--~~ 418 (477)
.++|.+.++.+...++..+++ +|. .-|+ -+++||+++|+|+|+..... .....+ +.-.-|..++ . .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcccc
Confidence 356788898888889998887 665 3343 58999999999999975421 122233 3212455543 1 22
Q ss_pred C----HHHHHHHHHHHHhH-hHHHHHHHHHHHHHHH
Q 011792 419 D----RSTIEKLVRDLMDN-KRDKIMESTVQIAKMA 449 (477)
Q Consensus 419 ~----~~~l~~~v~~ll~~-~~~~~~~~a~~l~~~~ 449 (477)
+ .++++++|.+++++ ....+.+++++.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 3 78899999999963 1223444554444433
No 115
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.31 E-value=0.0012 Score=64.01 Aligned_cols=111 Identities=16% Similarity=0.360 Sum_probs=78.3
Q ss_pred hcCCCceeeccCHHHHHhc--cccccccccc--------Cc------hhHHHHhhcCCceecCCccchhhhhHHHHhhhh
Q 011792 345 TKERGCIVSWAPQEEVLAH--QAIGGFLTHS--------GW------NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIW 408 (477)
Q Consensus 345 ~~~nv~~~~~~p~~~ll~~--~~~~~~I~HG--------G~------gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 408 (477)
..+|+.+.+|+|+.++... .+.+ +|.-+ .. +-+.+.+++|+|+|+. ++...+..| ++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~g-Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~ 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGFG-LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VEN 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCcC-eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhC
Confidence 3479999999998886432 1322 22221 11 2267789999999985 445666677 457
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 011792 409 KIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIE 468 (477)
Q Consensus 409 G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~ 468 (477)
++|+.++ +.+++.+++..+..++...+++|++++++.+++ |.....++++++.
T Consensus 279 ~~G~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999986 678899999987665446789999999999987 6655555555543
No 116
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.18 E-value=0.0018 Score=63.21 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=80.5
Q ss_pred EEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHH---HHhcccc
Q 011792 290 LYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEE---VLAHQAI 366 (477)
Q Consensus 290 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~---ll~~~~~ 366 (477)
.++..|.+.. ..-...++++++..+.++++.-.+ .....+.+...+||.+.+++|+.. ++..+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g----------~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDG----------PELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECC----------hhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 3455677653 233555667777777665554422 112233334568999999999854 6777887
Q ss_pred cccc--cccCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 367 GGFL--THSGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 367 ~~~I--~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
+| +.-|. -++.||+++|+|+|+....+ ....+.+ -+.|..++ .-+.++++++|..+++|
T Consensus 265 --~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~-~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 --FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFE-EQTVESLAAAVERFEKN 326 (351)
T ss_pred --EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeC-CCCHHHHHHHHHHHHhC
Confidence 55 33344 45789999999999986533 3333422 35677664 34788999999999997
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.13 E-value=0.34 Score=48.35 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=65.4
Q ss_pred EEEEecCcccCCHHHHHHHHHHHHhCCCcE-EEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccC-H---HHHHhcc
Q 011792 290 LYVSFGSFIKLSGDQILEFWHGIVNSGKGF-LWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAP-Q---EEVLAHQ 364 (477)
Q Consensus 290 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~---~~ll~~~ 364 (477)
+++..|.....+......+++|+...+.++ ++.++. |. . . .+.++...++.. + ..++..+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~------g~--~--~-----~~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGK------FS--P--F-----TAGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcC------CC--c--c-----cccceEEecCcCCHHHHHHHHHhC
Confidence 444455433222233466777887765544 344421 11 0 0 124566666653 3 3355557
Q ss_pred ccccccccc----CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHH
Q 011792 365 AIGGFLTHS----GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVR 428 (477)
Q Consensus 365 ~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~ 428 (477)
++ ||.-+ -..++.||+++|+|+|+....+ ....+ + .+-|..++ .-+.++|++++.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~-~~~G~lv~-~~d~~~La~~~~ 366 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-Q-KSGGKTVS-EEEVLQLAQLSK 366 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-e-CCcEEEEC-CCCHHHHHhccC
Confidence 76 77532 2468999999999999997754 22223 4 25677664 347788887544
No 118
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.96 E-value=0.004 Score=51.39 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=66.3
Q ss_pred EEEEEecCccc-CCHH-HHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCH-HHHHhccc
Q 011792 289 VLYVSFGSFIK-LSGD-QILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQ-EEVLAHQA 365 (477)
Q Consensus 289 ~v~vs~Gs~~~-~~~~-~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~-~~ll~~~~ 365 (477)
+.++++|+... ...+ +++.++..+.+...++-+.+-+. -++.+.+...+|+.+.+|++. ..++..++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~----------~~~~l~~~~~~~v~~~g~~~e~~~~l~~~d 72 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN----------GPDELKRLRRPNVRFHGFVEELPEILAAAD 72 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE----------SS-HHCCHHHCTEEEE-S-HHHHHHHHC-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC----------CHHHHHHhcCCCEEEcCCHHHHHHHHHhCC
Confidence 35566666653 3334 34436666655434454444322 111222212469999999863 33788888
Q ss_pred cccccc--ccC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 366 IGGFLT--HSG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 366 ~~~~I~--HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
+.+..+ +.| .+++.|++++|+|+|+.+.. ....+ +..+.|..+ .-+++++.+++.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--ANDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---TT-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--CCCHHHHHHHHHHHhcC
Confidence 844433 223 48999999999999997661 12222 335777766 35999999999999875
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.14 Score=49.23 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCCcEEEEEecCcccCCHHHHHHHHHHHHhC-----CCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCC-ceeeccC-
Q 011792 284 QPSRSVLYVSFGSFIKLSGDQILEFWHGIVNS-----GKGFLWVIRSDLIDGESGVGPVPAELDQGTKERG-CIVSWAP- 356 (477)
Q Consensus 284 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv-~~~~~~p- 356 (477)
..+++++.+-.||-..-=..+...+.++...+ +.+|++-+...... ...... ...+. ...-++.
T Consensus 185 ~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~------~~~~~~---~~~~~~~~~~~~~~ 255 (381)
T COG0763 185 DADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYR------RIIEEA---LKWEVAGLSLILID 255 (381)
T ss_pred CCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHH------HHHHHH---hhccccCceEEecC
Confidence 45778999999998642223333344444333 35666665322100 011111 11111 1222222
Q ss_pred --HHHHHhcccccccccccCchhHHHHhhcCCceecCCcc-chhhhhHHHHhhhhce------------eeecc-CCCCH
Q 011792 357 --QEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQV-GDQQVNSRCVSEIWKI------------GFDMK-DTCDR 420 (477)
Q Consensus 357 --~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~-~DQ~~na~rv~~~~G~------------G~~l~-~~~~~ 420 (477)
-..++..||+ .+.-+|- -++|+..+|+|||+.=-. .=-+..+.++.. ... ...+- +.+++
T Consensus 256 ~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~p 331 (381)
T COG0763 256 GEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTP 331 (381)
T ss_pred chHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCH
Confidence 2236767776 6666664 467999999999875211 001112333322 111 11111 36999
Q ss_pred HHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011792 421 STIEKLVRDLMDNK--RDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDI 470 (477)
Q Consensus 421 ~~l~~~v~~ll~~~--~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 470 (477)
+.|.+++..++.|. ...+++...+|.+.++ .++++..+++.+++.+
T Consensus 332 e~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 332 ENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 99999999999971 1234455555555554 4656666666666543
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.92 E-value=0.39 Score=50.22 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=51.7
Q ss_pred CCceeeccCHH-HHHhcccccccccc---cC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHH
Q 011792 348 RGCIVSWAPQE-EVLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRST 422 (477)
Q Consensus 348 nv~~~~~~p~~-~ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 422 (477)
++.+.++.++. .+++.+++ ||.= =| ..++.||+++|+|+|+....+... + .. |.+..+. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--CCHHH
Confidence 35566777755 48888887 7652 23 468999999999999987654221 2 21 3332232 47899
Q ss_pred HHHHHHHHHhH
Q 011792 423 IEKLVRDLMDN 433 (477)
Q Consensus 423 l~~~v~~ll~~ 433 (477)
+.+++.++|.|
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 121
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.78 E-value=0.015 Score=58.44 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=90.0
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHh--hhcCCCceeeccCHHH---
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQ--GTKERGCIVSWAPQEE--- 359 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~~--- 359 (477)
+++.+||++|--.-+.+|..++.-.+.+...+.-++|..+.+..- .+ .+..-..+ -.|+.+.+.+-+...+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g---e~-rf~ty~~~~Gl~p~riifs~va~k~eHvr 831 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG---EQ-RFRTYAEQLGLEPDRIIFSPVAAKEEHVR 831 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc---hH-HHHHHHHHhCCCccceeeccccchHHHHH
Confidence 466799999999989999999999999999999999999776321 00 00000000 0245666655544222
Q ss_pred --HHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 360 --VLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 360 --ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.|..-.++-..+. |..|.++.|+.|||||.+|.-.--.-.|.-+.-.+|+|-.+.+ +.++-.+.--++-.|
T Consensus 832 r~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak--~~eEY~~iaV~Latd 904 (966)
T KOG4626|consen 832 RGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK--NREEYVQIAVRLATD 904 (966)
T ss_pred hhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh--hHHHHHHHHHHhhcC
Confidence 3433334557776 7889999999999999999855444444322234788875533 444444433334333
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.69 E-value=0.28 Score=43.80 Aligned_cols=49 Identities=29% Similarity=0.301 Sum_probs=36.1
Q ss_pred cCCCceeeccCHHH----HHhcccccccccccC----chhHHHHhhcCCceecCCccch
Q 011792 346 KERGCIVSWAPQEE----VLAHQAIGGFLTHSG----WNSTLESMVAGVPMICWPQVGD 396 (477)
Q Consensus 346 ~~nv~~~~~~p~~~----ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~D 396 (477)
..|+.+.+++++.+ ++..+++ +|+-.. .+++.||+.+|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 46888888863222 3333666 887776 7899999999999999887553
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.65 E-value=0.026 Score=46.77 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. ......
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~----------~~~i~~~~~~~~--------~k~~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI----------IEGIKVIRLPSP--------RKSPLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH----------hCCeEEEEecCC--------CCccHH
Confidence 467777766554 56889999999999999999443222211 223666666411 111222
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcC-CCeEEEcc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELN-IPIITFRP 139 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lg-iP~v~~~~ 139 (477)
.+. .. .+..++++. +||+|.+..... .+..++...+ +|++....
T Consensus 60 ~~~-----~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 YIK-----YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH-----HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 222 12 577888876 899998887654 2445667888 99887533
No 124
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.39 E-value=0.13 Score=52.67 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=59.9
Q ss_pred cCCCceeeccCHHHHHhcccccccccc----cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhh-----c-eeeecc
Q 011792 346 KERGCIVSWAPQEEVLAHQAIGGFLTH----SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIW-----K-IGFDMK 415 (477)
Q Consensus 346 ~~nv~~~~~~p~~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~-----G-~G~~l~ 415 (477)
.+||.+.+...-..++..+++ +|.- |-..++.||+++|+|+|+... ......+ +.. | .|...
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE-
Confidence 468888886667778888887 5533 334689999999999999543 3333344 321 2 56555
Q ss_pred CCCCHHHHHHHHHHHHhHhHHHHHHH
Q 011792 416 DTCDRSTIEKLVRDLMDNKRDKIMES 441 (477)
Q Consensus 416 ~~~~~~~l~~~v~~ll~~~~~~~~~~ 441 (477)
...+.+++++++.++++| +..+++
T Consensus 425 ~~~d~~~la~ai~~ll~~--~~~~~~ 448 (475)
T cd03813 425 PPADPEALARAILRLLKD--PELRRA 448 (475)
T ss_pred CCCCHHHHHHHHHHHhcC--HHHHHH
Confidence 446899999999999997 544333
No 125
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.30 E-value=0.0047 Score=47.48 Aligned_cols=50 Identities=14% Similarity=0.357 Sum_probs=41.6
Q ss_pred ccccccCCCCCcEEEEEecCcccC---CH--HHHHHHHHHHHhCCCcEEEEEecC
Q 011792 277 CMTWLGSQPSRSVLYVSFGSFIKL---SG--DQILEFWHGIVNSGKGFLWVIRSD 326 (477)
Q Consensus 277 ~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 326 (477)
+-.|+...++++.|++|+||.... .. ..+..++++++.++..+|..+...
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 446998788999999999999853 22 478999999999999999999643
No 126
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.24 E-value=0.052 Score=53.42 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=56.3
Q ss_pred cCCCceeeccCHH-HHHhcccccccccc--cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHH
Q 011792 346 KERGCIVSWAPQE-EVLAHQAIGGFLTH--SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRST 422 (477)
Q Consensus 346 ~~nv~~~~~~p~~-~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 422 (477)
++++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+ ..-+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv-~~~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLV-PKGDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEe-CCCcHHH
Confidence 4567777776644 48888888333343 33468999999999999864321 122334 323466655 4468999
Q ss_pred HHHHHHHHHhH
Q 011792 423 IEKLVRDLMDN 433 (477)
Q Consensus 423 l~~~v~~ll~~ 433 (477)
++++|..+++|
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 99999999997
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.21 E-value=1.1 Score=41.89 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc-cchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH-HHHHh
Q 011792 14 FPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ-YHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK-DWFCS 91 (477)
Q Consensus 14 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 91 (477)
.+-.-|+..+..|-++|..+||+|.+.+-+. ....+....+ +++..+.. .....+. .++..
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg----------f~~~~Igk-------~g~~tl~~Kl~~~ 69 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG----------FPYKSIGK-------HGGVTLKEKLLES 69 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC----------CCeEeecc-------cCCccHHHHHHHH
Confidence 3444689999999999999999999987632 1222222222 44444431 0111223 23333
Q ss_pred hchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCch
Q 011792 92 NKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 142 (477)
.. ..-.|.++..+. +||+.+. -...-+..+|-.+|+|.+.+.-+..
T Consensus 70 ~e--R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 70 AE--RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HH--HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 32 234567777766 9999999 5567889999999999999865544
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.01 E-value=0.26 Score=47.42 Aligned_cols=131 Identities=7% Similarity=0.007 Sum_probs=75.0
Q ss_pred CCcEEEEEecCc-c--cCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeec--cC-HHH
Q 011792 286 SRSVLYVSFGSF-I--KLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSW--AP-QEE 359 (477)
Q Consensus 286 ~~~~v~vs~Gs~-~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p-~~~ 359 (477)
+++.|.+..|+. . ..+.+.+.++++.+...+.++++..+++... .......+..+ +..+.+- ++ -..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~------~~~~~i~~~~~-~~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEK------QRAERIAEALP-GAVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH------HHHHHHHhhCC-CCeecCCCCHHHHHH
Confidence 455666666653 3 3778888889988876677776665322100 11111221122 2223332 33 334
Q ss_pred HHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhcee---eecc--CCCCHHHHHHHHHHHH
Q 011792 360 VLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIG---FDMK--DTCDRSTIEKLVRDLM 431 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G---~~l~--~~~~~~~l~~~v~~ll 431 (477)
++++|++ +|+. -.|.++=|.+.|+|+|.+ ++ +.+..+. .-+|-. +.-. ...+++++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~-~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRT-GGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhc-ccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8888887 9987 789999999999999876 21 1111111 001111 1111 4789999999998775
No 129
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.83 E-value=1.4 Score=43.00 Aligned_cols=103 Identities=13% Similarity=-0.023 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEE-EeCCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLC-TSIPDGLPPDNPRFGI 83 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 83 (477)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.+... |.++- +.++.. . .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------P~vd~vi~~~~~--~-~----- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----------PEVNEAIPMPLG--H-G----- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----------CccCEEEecccc--c-c-----
Confidence 589999999999999999999999996 8999999986655544332 22432 222210 0 0
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
... +.. ...+...++.. ++|++|.=....-...++...|+|.-.
T Consensus 63 -~~~-~~~-----~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 -ALE-IGE-----RRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -hhh-hHH-----HHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 111 11223334434 899999876566666777777887654
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.80 E-value=0.026 Score=47.61 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHHHH
Q 011792 22 PMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLAFR 101 (477)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (477)
-+..|+++|.++||+|+++++......- . .....+.+..++ .+... ....... ....+.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~--------~~~~~~~~~~~~--~~~~~-----~~~~~~~-----~~~~~~ 64 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDD-E--------EEEDGVRVHRLP--LPRRP-----WPLRLLR-----FLRRLR 64 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG--S--------EEETTEEEEEE----S-SS-----SGGGHCC-----HHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccc-c--------cccCCceEEecc--CCccc-----hhhhhHH-----HHHHHH
Confidence 4678999999999999999975433211 0 011236666665 11111 0011111 123445
Q ss_pred HHHhcCCCCCeEEEECCCcc-hHHHHHH-HcCCCeEEEcc
Q 011792 102 QLLMTPGRLPTCIISDSIMS-FAIDVAE-ELNIPIITFRP 139 (477)
Q Consensus 102 ~~l~~~~~~~D~vI~D~~~~-~~~~~A~-~lgiP~v~~~~ 139 (477)
+++.....+||+|.+..... ....+++ ..++|+|....
T Consensus 65 ~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 65 RLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 55522233999999988433 2333444 88999988643
No 131
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.34 E-value=0.095 Score=46.22 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccch
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHD 47 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (477)
||||+..--+. +---+.+|+++|.+.||+|++++|.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 67888877776 55668999999988899999999976543
No 132
>PHA01633 putative glycosyl transferase group 1
Probab=95.22 E-value=0.51 Score=45.53 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=56.2
Q ss_pred hcCCCcee---eccCHH---HHHhcccccccccc---cC-chhHHHHhhcCCceecCCc------cchh------hhhHH
Q 011792 345 TKERGCIV---SWAPQE---EVLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQ------VGDQ------QVNSR 402 (477)
Q Consensus 345 ~~~nv~~~---~~~p~~---~ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~------~~DQ------~~na~ 402 (477)
.++++.+. +++++. .++..+++ +|.- =| ..++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45688887 455654 46777776 7753 24 4578999999999998633 2332 23332
Q ss_pred HHhh-hhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 403 CVSE-IWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 403 rv~~-~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
..+. ..|.|... ...+++++++++.+++.
T Consensus 277 ~~~~~~~g~g~~~-~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKI-HKFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeee-cCCCHHHHHHHHHHHHh
Confidence 2222 24666655 46899999999999965
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.17 E-value=0.4 Score=47.94 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=68.5
Q ss_pred HHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeee-cc-CCCCHHHHHHHHHHHHhHhHH
Q 011792 359 EVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFD-MK-DTCDRSTIEKLVRDLMDNKRD 436 (477)
Q Consensus 359 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~-l~-~~~~~~~l~~~v~~ll~~~~~ 436 (477)
.++.+|++ +|..= +=++.-|+..|||.+.++. | +.....+ +.+|.... .+ ++++.++|.+.+.++++|+ +
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r-~ 394 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRHLLDGSLQAMVADTLGQL-P 394 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhhCCHHHHHHHHHHHHhCH-H
Confidence 58888876 77542 2245668899999999988 3 3333333 34787755 44 6899999999999999964 6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 437 KIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 437 ~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
.+++..++-.+.++.. + .+...++|+.+-
T Consensus 395 ~~~~~l~~~v~~~r~~----~--~~~~~~~~~~~~ 423 (426)
T PRK10017 395 ALNARLAEAVSRERQT----G--MQMVQSVLERIG 423 (426)
T ss_pred HHHHHHHHHHHHHHHH----H--HHHHHHHHHHhc
Confidence 7777777766666653 1 445566666543
No 134
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.10 E-value=2.7 Score=40.68 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeE-EEeCCCCCCCCCCCCCCC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFL-CTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 84 (477)
||+|+-..+.|++.-..++.++|++. +.+|++++.+.+.+.+... +.++ +..++.. . .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------p~id~v~~~~~~--~----~--- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----------PEIRQAIDMPLG--H----G--- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----------chhceeeecCCc--c----c---
Confidence 58999999999999999999999997 8999999986654444332 2232 2222210 0 0
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeE
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPII 135 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v 135 (477)
...+ .. ...+...++.. ++|++|.-....-...++...|+|.-
T Consensus 62 ~~~~-~~-----~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 62 ALEL-TE-----RRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred chhh-hH-----HHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0001 00 01223334433 89999998766666667777788754
No 135
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.98 E-value=1.1 Score=45.88 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=48.2
Q ss_pred cCCCceeeccCH-HHHHhccccccccc---ccC-chhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 346 KERGCIVSWAPQ-EEVLAHQAIGGFLT---HSG-WNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 346 ~~nv~~~~~~p~-~~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
.++|.+.+|..+ ..+|..+++ ||. +-| .+++.||+++|+|+|+.... .+...|.+ -..|..++ .-+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~d-G~nG~LVp-~~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIE-GVSGFILD-DAQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHccc-CCcEEEEC-CCCh
Confidence 467888888653 337888887 775 345 46999999999999987542 34444533 35666664 2344
Q ss_pred HHHHHHH
Q 011792 421 STIEKLV 427 (477)
Q Consensus 421 ~~l~~~v 427 (477)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 5555544
No 136
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.81 E-value=1.6 Score=41.70 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=41.1
Q ss_pred CHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhh----hHHHHhhhhceeeecc
Q 011792 356 PQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQV----NSRCVSEIWKIGFDMK 415 (477)
Q Consensus 356 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~----na~rv~~~~G~G~~l~ 415 (477)
|+..+|..++. .+||--..+=+.||+..|+|+.++|.-. +.. ....+.+ .|+-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 68889988887 5666666788999999999999999876 322 1233433 57776665
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.13 Score=51.70 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=74.7
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHh---h---hcCCCceeeccCHH
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQ---G---TKERGCIVSWAPQE 358 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~~~nv~~~~~~p~~ 358 (477)
+++.+||++|+-..+..++.+..=...++..+.-++|...+...+ .+...+++ + .++++++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~------~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA------EINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH------HHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 567899999999999999999998888989899999998653111 11111111 1 13567777666644
Q ss_pred H---HHhcccccccc---cccCchhHHHHhhcCCceecCCccchhh
Q 011792 359 E---VLAHQAIGGFL---THSGWNSTLESMVAGVPMICWPQVGDQQ 398 (477)
Q Consensus 359 ~---ll~~~~~~~~I---~HGG~gs~~eal~~GvP~l~~P~~~DQ~ 398 (477)
. =+..+|+ |+ -.||+.|+.|+|..|||+|..+ ++|+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3 3444555 65 4799999999999999999875 5555
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.52 E-value=0.37 Score=36.57 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=50.1
Q ss_pred ccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhc-eeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011792 372 HSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWK-IGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMAR 450 (477)
Q Consensus 372 HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~ 450 (477)
+|-..-+.|++++|+|+|.-.. ......+ + -| -++..+ +.+++.+++..+++| +..+++ +++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~-~~~~~~~~~---~~~el~~~i~~ll~~--~~~~~~---ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-E-DGEHIITYN---DPEELAEKIEYLLEN--PEERRR---IAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-C-CCCeEEEEC---CHHHHHHHHHHHHCC--HHHHHH---HHHHHH
Confidence 4556789999999999999865 2233333 2 24 333332 999999999999998 543333 333333
Q ss_pred HHHHcCCChHHHHHHHH
Q 011792 451 DAVKEGGSSYRNLEKLI 467 (477)
Q Consensus 451 ~~~~~gg~~~~~~~~~i 467 (477)
+.+...-+....++.++
T Consensus 75 ~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33333444444455444
No 139
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.36 E-value=5.4 Score=38.75 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeE-EEeCCCCCCCCCCCCCCC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFL-CTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 84 (477)
||+++-....|++.-+.++.+.|.++ +-+|++++.+.+.+-+... +.++ ++.++.... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------p~vd~vi~~~~~~~------~-- 62 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----------PDINALYGLDRKKA------K-- 62 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----------CCccEEEEeChhhh------c--
Confidence 58999999999999999999999996 8999999997665444332 2242 333331100 0
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
.....+.. .. .+...++.. ++|++|.-........++...|.|.-.
T Consensus 63 --~~~~~~~~-~~-~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 63 --AGERKLAN-QF-HLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --chHHHHHH-HH-HHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 00001111 11 122223433 899999776555677888888998755
No 140
>PRK14098 glycogen synthase; Provisional
Probab=94.28 E-value=0.54 Score=48.16 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=74.1
Q ss_pred cEEEEEecCccc-CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCC--CCchhhHhhhcCCCceeeccCHH---HHH
Q 011792 288 SVLYVSFGSFIK-LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVG--PVPAELDQGTKERGCIVSWAPQE---EVL 361 (477)
Q Consensus 288 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~nv~~~~~~p~~---~ll 361 (477)
..+++..|.... ...+.+...+..+...+.++++.-. |... ..-..+.++.++++.+..+++.. .++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~-------G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGS-------GDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeC-------CCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH
Confidence 346666677653 2334433333334333555544332 2100 00112223346788888888864 478
Q ss_pred hccccccccccc---Cc-hhHHHHhhcCCceecCCccc--hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 362 AHQAIGGFLTHS---GW-NSTLESMVAGVPMICWPQVG--DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 362 ~~~~~~~~I~HG---G~-gs~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
+.+|+ ++.-+ |+ .+.+||+++|+|.|+....+ |.-.. .. +.-+-|... ...+++.+.++|.++++
T Consensus 380 a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~-~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 380 AGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIF-HDYTPEALVAKLGEALA 450 (489)
T ss_pred HhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEe-CCCCHHHHHHHHHHHHH
Confidence 78887 76533 33 37789999999888876432 21100 01 112566666 44689999999998764
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.81 E-value=3.5 Score=39.96 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=67.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (477)
|+|+++-....|++.-.+++-+.|.++ +.++++++...+.+-+..... ++-.-. .... .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~----------I~~vi~-----~~~~-~~-~ 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPE----------IDKVII-----IDKK-KK-G 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChH----------hhhhcc-----cccc-cc-c
Confidence 799999999999999999999999998 499999998665444433211 221111 0000 00 0
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
.-+. ....+...++.. ++|+||.=....-...++...++|.-.
T Consensus 65 --~~~~-----~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 --LGLK-----ERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred --cchH-----HHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011 122344455544 899999988777777777788888755
No 142
>PHA01630 putative group 1 glycosyl transferase
Probab=93.67 E-value=1.2 Score=43.07 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=59.5
Q ss_pred eccCHHH---HHhccccccccc---ccC-chhHHHHhhcCCceecCCccc--hhh---hhHHHHhhh-----------hc
Q 011792 353 SWAPQEE---VLAHQAIGGFLT---HSG-WNSTLESMVAGVPMICWPQVG--DQQ---VNSRCVSEI-----------WK 409 (477)
Q Consensus 353 ~~~p~~~---ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~--DQ~---~na~rv~~~-----------~G 409 (477)
.++|+.+ ++..+++ +|. ..| ..++.||+++|+|+|+.-..+ |.- .|+..+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 4477555 5777887 652 333 458999999999999976432 211 122111 10 12
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 011792 410 IGFDMKDTCDRSTIEKLVRDLMDNK-RDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIR 471 (477)
Q Consensus 410 ~G~~l~~~~~~~~l~~~v~~ll~~~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 471 (477)
+|...+ .+.+++.+++.+++.|. .+.++++.+.-+....+ . .++..+.+-++++.
T Consensus 273 ~G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~-fs~~~ia~k~~~l~ 328 (331)
T PHA01630 273 VGYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----N-YSYNAIAKMWEKIL 328 (331)
T ss_pred cccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----h-CCHHHHHHHHHHHH
Confidence 444433 36788888888888751 12344443333333332 2 33555555555544
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.23 E-value=0.44 Score=41.06 Aligned_cols=116 Identities=18% Similarity=0.077 Sum_probs=60.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHH-HhC-CCeEEEEeCCccchh--ccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 10 VLLPFPAYGHIKPMLSLAKLF-SHA-GFRITFVNTDQYHDR--LFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 10 l~~~~~~~GHv~p~l~La~~L-~~r-GH~Vt~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
+++.. +-||+.=|+.|.+.+ .++ .++..+++..+.... +.+... .......+..+|......+ ..
T Consensus 2 l~v~g-sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~-----~~~~~~~~~~~~r~r~v~q-----~~ 70 (170)
T PF08660_consen 2 LVVLG-SGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK-----SSSKRHKILEIPRAREVGQ-----SY 70 (170)
T ss_pred EEEEc-CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH-----hccccceeeccceEEEech-----hh
Confidence 34444 449999999999999 333 566666665432211 110000 0000012333332211111 11
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHc------CCCeEEEcc
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS--FAIDVAEEL------NIPIITFRP 139 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~l------giP~v~~~~ 139 (477)
......+.......+.-+.+. +||+||+..-.. ..+.+|..+ |.++|.+-+
T Consensus 71 ~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 71 LTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 111112222233344444443 899999998777 456788888 999988644
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.95 E-value=1.9 Score=36.99 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEc
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEEL-NIPIITFR 138 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~ 138 (477)
...+.++-++ +-.||+|+...-.-.+..+-+.+ ++|.+.+.
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 3444454444 55899999999666788899999 89998863
No 145
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.84 E-value=1.4 Score=40.67 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
|+|+++...+. -..|++.|.++||+|+..+............+. ....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~---------~~v~------------------ 48 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQA---------LTVH------------------ 48 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccccCC---------ceEE------------------
Confidence 46666654443 568999999999999998875543222111110 1100
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEE
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITF 137 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~ 137 (477)
.+. .....+.+++.+. ++|+||--...+ .+..+|+.+|||++.+
T Consensus 49 --~g~---l~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 49 --TGA---LDPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred --ECC---CCHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 000 0123466777765 899777555444 2567899999999996
No 146
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.37 E-value=0.62 Score=39.72 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 18 GHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 18 GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|=-.-+..|+++|+++||+|+++++..
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 455678999999999999999998743
No 147
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.00 E-value=6.5 Score=36.18 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
|||++.---|. |---+.+|+++|.. +|+|++++|....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCC
Confidence 56777666554 33348899999975 6899999986543
No 148
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.98 E-value=3.9 Score=37.34 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=62.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCC-CCCCCCCCCCCCh
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPD-GLPPDNPRFGIYT 85 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 85 (477)
|||++..--| =|---+.+|+++|. .+++|++++|.....-..... .....+....+.. .+-.. ..
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl------Tl~~Plr~~~~~~~~~av~-----GT- 66 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL------TLHEPLRVRQVDNGAYAVN-----GT- 66 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc------ccccCceeeEeccceEEec-----CC-
Confidence 4666665544 35556888999999 999999999966543322211 1111122222221 00000 00
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCC----------c---chHHHHHHHcCCCeEEEccC
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI----------M---SFAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgiP~v~~~~~ 140 (477)
..-| ..-.+..++++. .||+||+..- + .+|++=|..+|||.|.++..
T Consensus 67 PaDC------V~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 67 PADC------VILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred hHHH------HHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 0001 123456666553 6999998532 2 25677788899999998654
No 149
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.42 E-value=18 Score=33.55 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.7
Q ss_pred cCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 011792 13 PFPAYGHIKPMLSLAKLFSH-AGFRITFVNTD 43 (477)
Q Consensus 13 ~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 43 (477)
..--||++--.-.||+.|++ +||+|.+-+.+
T Consensus 10 ViDNyGDIGV~wRLARql~re~G~~VrLWvDd 41 (370)
T COG4394 10 VIDNYGDIGVAWRLARQLKREHGWQVRLWVDD 41 (370)
T ss_pred hhcccchhHHHHHHHHHHHHHhCceeeeecCC
Confidence 34568999999999999977 69999999875
No 150
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.22 E-value=18 Score=33.23 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.1
Q ss_pred eccCHHHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 353 SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 353 ~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
++=|+.+.|+.++. .++|--..+-..||...|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 44589999988776 345555668899999999999553
No 151
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.99 E-value=7.7 Score=35.75 Aligned_cols=116 Identities=18% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCC-CCCC
Q 011792 5 RVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNP-RFGI 83 (477)
Q Consensus 5 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 83 (477)
++|||++..--|. |---+.+|+++|.+.| +|++++|.....-.... ......+.+..+.. ..... ....
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a------it~~~pl~~~~~~~--~~~~~~y~v~ 73 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHA------MTLGVPLRIKEYQK--NNRFFGYTVS 73 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccc------ccCCCCeEEEEEcc--CCCceEEEEc
Confidence 3799998877664 2245889999999888 79999886543222111 11112244443320 00000 0000
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCC----------cc---hHHHHHHHcCCCeEEEcc
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI----------MS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~v~~~~ 139 (477)
-...-| ..-.+..++.. +||+||+..- +. +|+.-|..+|||.|.++.
T Consensus 74 GTPaDC------V~lal~~~~~~---~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 74 GTPVDC------IKVALSHILPE---KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CcHHHH------HHHHHHhhcCC---CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 001111 11223344432 7999998542 22 567778889999999875
No 152
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.72 E-value=5.5 Score=38.86 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeE-EEeCCCCCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFL-CTSIPDGLPPD 77 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 77 (477)
|+.. ++||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.+... |.++ ++.++..
T Consensus 1 ~~~~-~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----------P~id~vi~~~~~---- 65 (352)
T PRK10422 1 MDKP-FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN----------PEINALYGIKNK---- 65 (352)
T ss_pred CCCC-CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC----------CCceEEEEeccc----
Confidence 6644 5899999999999999999999999997 8999999987765544332 2242 2333210
Q ss_pred CCCCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 78 NPRFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
. ......+..+. .+...++.. +||++|.-........++...|.|...
T Consensus 66 ~----~~~~~~~~~~~-----~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 K----AGASEKIKNFF-----SLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred c----ccHHHHHHHHH-----HHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 00011111111 122333433 999999766554556677777877755
No 153
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=88.68 E-value=2.8 Score=42.55 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=64.6
Q ss_pred eccCHHH---HHhccccccccc---ccCc-hhHHHHhhcCCc----eecCCccchhhhhHHHHhhhhceeeeccCCCCHH
Q 011792 353 SWAPQEE---VLAHQAIGGFLT---HSGW-NSTLESMVAGVP----MICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRS 421 (477)
Q Consensus 353 ~~~p~~~---ll~~~~~~~~I~---HGG~-gs~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 421 (477)
..+++.+ ++..+|+ ++. +=|+ .++.|++++|+| +|+--+.+-. ..+ +-|+.+ ...+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllV-nP~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLV-NPYDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEE-CCCCHH
Confidence 4566666 4666776 665 3465 478899999999 6666544321 122 234444 456899
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011792 422 TIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDI 470 (477)
Q Consensus 422 ~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 470 (477)
+++++|.++|++..++-+++.+++.+.+.. -+...-++++++++
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 999999999984224455566666666544 24455567777655
No 154
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.64 E-value=11 Score=34.69 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
||||+..--|. |---+.+|+++|.+ +|+|++++|....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 56777766554 33458889999975 6899999986543
No 155
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.25 E-value=12 Score=34.32 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=59.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCC--CCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPD--GLPPDNPRFGIY 84 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~ 84 (477)
||||+.---|. |---+.+|+++|.+.| +|+++.|.....-.... ......+.+..++. +.. ...-...
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a------it~~~pl~~~~~~~~~~~~--~~~v~GT 70 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHS------LTLFEPLRVGQVKVKNGAH--IYAVDGT 70 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccC------cCCCCCeEEEEeccCCCcc--EEEEcCc
Confidence 46666655442 3344788999999998 89999986543332221 11112244444331 100 0000000
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCC----------cc---hHHHHHHHcCCCeEEEcc
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI----------MS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~v~~~~ 139 (477)
...| ..-.+..++.+ +||+||+..- +. +|++-|...|||.+.++.
T Consensus 71 -PaDc------v~~gl~~l~~~---~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 71 -PTDC------VILGINELMPE---VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred -HHHH------HHHHHHHhccC---CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 0001 11123334332 7999998542 22 567788889999999865
No 156
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=86.21 E-value=14 Score=34.04 Aligned_cols=111 Identities=19% Similarity=0.096 Sum_probs=60.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
||||+.---|. |---+.+|+++|... |+|+++.|.....-.... ......+.+..+.+. . ....-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~a------it~~~pl~~~~~~~~----~-~~v~GTP 67 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHS------LTLTRPLRVEKVDNG----F-YAVDGTP 67 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCccc------ccCCCCeEEEEecCC----e-EEECCcH
Confidence 46776665553 344588999999998 799999986543322111 111112444433210 0 0000000
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCC----------cc---hHHHHHHHcCCCeEEEcc
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI----------MS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~----------~~---~~~~~A~~lgiP~v~~~~ 139 (477)
.-| ..-.+..++.+ +||+||+..- +. +|+.-|...|||.+.++.
T Consensus 68 aDc------V~~gl~~l~~~---~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 68 TDC------VHLALNGLLDP---KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHH------HHHHHHhhccC---CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 000 11223344432 8999998542 22 567778889999999865
No 157
>PLN02939 transferase, transferring glycosyl groups
Probab=86.08 E-value=29 Score=38.34 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=53.7
Q ss_pred cCCCceeeccCHH---HHHhcccccccccc---cC-chhHHHHhhcCCceecCCccc--hhhhh--HHHHhhhhceeeec
Q 011792 346 KERGCIVSWAPQE---EVLAHQAIGGFLTH---SG-WNSTLESMVAGVPMICWPQVG--DQQVN--SRCVSEIWKIGFDM 414 (477)
Q Consensus 346 ~~nv~~~~~~p~~---~ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~--DQ~~n--a~rv~~~~G~G~~l 414 (477)
.++|.+..+.+.. .+++.+++ ||.- =| ..+.+||+++|+|.|+....+ |--.. ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888764 47888887 7753 23 358999999999998875533 21110 00111112456555
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 011792 415 KDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 415 ~~~~~~~~l~~~v~~ll~ 432 (477)
+ ..+++.+.+++.+++.
T Consensus 914 ~-~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 L-TPDEQGLNSALERAFN 930 (977)
T ss_pred c-CCCHHHHHHHHHHHHH
Confidence 3 3588999999988875
No 158
>PRK14099 glycogen synthase; Provisional
Probab=85.69 E-value=11 Score=38.63 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCC------CCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAY------GHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~------GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
+|||++++.-.. |=-.-.-+|.++|+++||+|.++.|
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P 45 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP 45 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 589999876321 3334567889999999999999998
No 159
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.22 E-value=1.3 Score=35.42 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCC---CHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPFPAYG---HIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~~~~G---Hv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
|||+|+.-|-.+ .-...++|+.+-++|||+|.+++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 578888776533 335689999999999999999988543
No 160
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.56 E-value=3.9 Score=41.62 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=58.0
Q ss_pred eeccCHHH---HHhccccccccc---ccCc-hhHHHHhhcCCc----eecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 352 VSWAPQEE---VLAHQAIGGFLT---HSGW-NSTLESMVAGVP----MICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 352 ~~~~p~~~---ll~~~~~~~~I~---HGG~-gs~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
.+++++.+ ++..+++ +|. +-|+ .++.||+++|+| +|+.-+.+- . +...-|..+ ...+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-~-------~~~~~g~lv-~p~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-A-------EELSGALLV-NPYDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-h-------hhcCCCEEE-CCCCH
Confidence 36778766 4667777 663 4455 477999999999 544422211 0 101223343 34689
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011792 421 STIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDI 470 (477)
Q Consensus 421 ~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 470 (477)
++++++|.+++++..+..+++.++..+.+.+ -+...-+++++.++
T Consensus 415 ~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 9999999999985212223333333333332 23344456665543
No 161
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=82.79 E-value=25 Score=32.56 Aligned_cols=113 Identities=8% Similarity=-0.041 Sum_probs=57.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC---CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA---GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGI 83 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r---GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (477)
||||+.---|. |---+.+|+++|... |++|++++|.....-.... ......+.+..+.+.. ....
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gha------iT~~~pl~~~~~~~~~-----yav~ 68 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHC------ISYTHPMMIAELGPRR-----FAAE 68 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccc------ccCCCCeEEEEeCCCe-----EEEc
Confidence 45555554332 233467788888763 4799999986543222111 1111124444432110 0000
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECC----------Ccc---hHHHHHHHcCCCeEEEcc
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDS----------IMS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~----------~~~---~~~~~A~~lgiP~v~~~~ 139 (477)
-...-| ..-.+..++.. .+||+||+.. ++. +|+.-|..+|||.|.++.
T Consensus 69 GTPaDC------V~lal~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 69 GSPADC------VLAALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CchHHH------HHHHHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 000111 11233444432 2899999853 222 567778889999999865
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.67 E-value=2.9 Score=34.54 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
+.+|++.+.++-+|..-..-++..|.++|++|+++...--.+.+.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 5799999999999999999999999999999999987544444433
No 163
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.27 E-value=19 Score=31.62 Aligned_cols=105 Identities=7% Similarity=-0.014 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
+-.|.+++..+.|-....+.+|-+.+.+|++|.++..-... ...+.. ......+++.+...+.++.... .+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~---~~~GE~-~~l~~l~~v~~~~~g~~~~~~~----~~~ 93 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA---WSTGER-NLLEFGGGVEFHVMGTGFTWET----QDR 93 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---CccCHH-HHHhcCCCcEEEECCCCCcccC----CCc
Confidence 34788999999999999999999999999999999752211 011111 2223334688888876543322 111
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
.... ...+......++.+.+. ++|+||-|-...
T Consensus 94 ~e~~-~~~~~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDI-AAAREGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred HHHH-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 1111 12222334445555543 899999998654
No 164
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=80.63 E-value=2 Score=37.02 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|||+++.-.+. +- ..|.++...|||+||.++-.
T Consensus 1 mKIaiIgAsG~--~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGK--AG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCch--hH--HHHHHHHHhCCCeeEEEEeC
Confidence 57777765543 22 46889999999999999863
No 165
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=79.75 E-value=2.1 Score=34.90 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=33.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
|||++...|+.+=.. ...+.++|.++|++|.++.++.-.+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 588888888866555 99999999999999999999665444433
No 166
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=79.33 E-value=9.1 Score=35.43 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
|||++..--|. |---+.+|+++|...| +|+++.|...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 46777666554 3456889999998888 7999988654
No 167
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.19 E-value=18 Score=30.64 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCC----CCC--C
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLP----PDN--P 79 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~--~ 79 (477)
.|||++--.|+.|-.--.+.+++.|.+.|+.|-=+-+++..+--.. ..+....+..+-. ... .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-----------~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-----------IGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-----------eeeEEEEccCCceEEEEEcCCCC
Confidence 5899999999999999999999999999999875555443322111 1144455442110 011 0
Q ss_pred CCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCc
Q 011792 80 RFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIM 120 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 120 (477)
.......-..+.+.+...+.++..++ ..|+||.|..-
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEIG 110 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEIG 110 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEeccc
Confidence 01111112334444444556666555 47999999754
No 168
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.56 E-value=25 Score=29.88 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=60.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
-|.+.+.++.|-....+.+|-+.+.+|++|.++..-... ...+.. ......+++.+.....++.... .+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~---~~~gE~-~~l~~l~~v~~~~~g~~~~~~~----~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG---WKYGEL-KALERLPNIEIHRMGRGFFWTT----ENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC---CccCHH-HHHHhCCCcEEEECCCCCccCC----CChHH
Confidence 367778888898888888888888899999996532110 011111 2233345688888775443222 11111
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
... ..+......++.+... .+|+||-|-...
T Consensus 76 ~~~-~a~~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 76 DIA-AAAEGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred HHH-HHHHHHHHHHHHHhcC--CCCEEEEechHh
Confidence 111 1122333445555543 899999998664
No 169
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=78.53 E-value=10 Score=36.43 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRL 49 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l 49 (477)
|||+++-..+.|++.-..++.+.|+++ +.++++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 589999999999999999999999997 9999999986654433
No 170
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.30 E-value=6 Score=36.90 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=60.2
Q ss_pred eeccCHHHHHhcccccccccccCchhHH-HHhhcCCceecCCccchhhh--hHHHHhhhhceeeeccCCCCHHHHHHHHH
Q 011792 352 VSWAPQEEVLAHQAIGGFLTHSGWNSTL-ESMVAGVPMICWPQVGDQQV--NSRCVSEIWKIGFDMKDTCDRSTIEKLVR 428 (477)
Q Consensus 352 ~~~~p~~~ll~~~~~~~~I~HGG~gs~~-eal~~GvP~l~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~~~~~l~~~v~ 428 (477)
..|-...++|.++++ .|--. ||.. +++-.|||+|.+|-.+-|+. .|.|-.+-+|+.+.+-+ ..+..-..+.+
T Consensus 300 lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q 374 (412)
T COG4370 300 LSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQ 374 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHH
Confidence 466667777777766 55433 4444 46889999999999999876 45555454566666642 33444445555
Q ss_pred HHHhHhHHHHHHHHHH-HHHHHHH
Q 011792 429 DLMDNKRDKIMESTVQ-IAKMARD 451 (477)
Q Consensus 429 ~ll~~~~~~~~~~a~~-l~~~~~~ 451 (477)
++|.| +.+.++++. =.+++..
T Consensus 375 ~ll~d--p~r~~air~nGqrRiGq 396 (412)
T COG4370 375 ELLGD--PQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHhcC--hHHHHHHHhcchhhccC
Confidence 69998 887777763 3344433
No 171
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.12 E-value=3.3 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
||++.+.++-.|.....-++..|..+|++|+++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999887653
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.98 E-value=13 Score=34.65 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=33.5
Q ss_pred ceeeccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCc
Q 011792 350 CIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQ 393 (477)
Q Consensus 350 ~~~~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 393 (477)
.+.+-++-.+|+.+++. |||-.+ .+-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 34467788899999887 888854 578999999999999864
No 173
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.49 E-value=62 Score=30.19 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=51.3
Q ss_pred CCCceeeccCH---HHHHhcccccccccc---cCch-hHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCC
Q 011792 347 ERGCIVSWAPQ---EEVLAHQAIGGFLTH---SGWN-STLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCD 419 (477)
Q Consensus 347 ~nv~~~~~~p~---~~ll~~~~~~~~I~H---GG~g-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 419 (477)
.++.+.+++++ ..++..+++ ++.- .|.| ++.|++++|+|+|..... .....+ ..-+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecCCCC
Confidence 56777898882 335666665 6655 3554 469999999999666443 223333 3222366 433237
Q ss_pred HHHHHHHHHHHHhH
Q 011792 420 RSTIEKLVRDLMDN 433 (477)
Q Consensus 420 ~~~l~~~v~~ll~~ 433 (477)
.+++.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999987
No 174
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=76.99 E-value=41 Score=28.48 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=64.0
Q ss_pred EEEcCCCCCCHHH-HHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCC--------CCCCC
Q 011792 10 VLLPFPAYGHIKP-MLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLP--------PDNPR 80 (477)
Q Consensus 10 l~~~~~~~GHv~p-~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~ 80 (477)
+.+.+...+.+.. +-.+|+.|+++|++|.=+........- ..........++.+.. .....
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~----------~~~~~m~l~dl~~G~~~~IsQ~LG~gs~g 71 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD----------GGRCDMDLRDLPSGRRIRISQDLGPGSRG 71 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC----------CCccceEEEECCCCCEEEEeeccCCCCcc
Confidence 3455555677776 456899999999999877653211110 1112355555543321 11111
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc---------hHHHHHHHcCCCeEEEccCchhh
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS---------FAIDVAEELNIPIITFRPYSAYC 144 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~v~~~~~~~~~ 144 (477)
-..+...+ . .....+.+.+.+ .+|++|.+-|-- ..+..|-..|||+++..+.....
T Consensus 72 CrLD~~~L----a-~A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~ 136 (159)
T PF10649_consen 72 CRLDPGAL----A-EASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLE 136 (159)
T ss_pred cccCHHHH----H-HHHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHH
Confidence 11111111 1 122334455544 899999998654 23455677799999976655443
No 175
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.96 E-value=13 Score=40.65 Aligned_cols=103 Identities=7% Similarity=0.141 Sum_probs=62.8
Q ss_pred ccCHHH---HHhcccccccccc---cCch-hHHHHhhcCCc---eecCC-ccchhhhhHHHHhhhhc-eeeeccCCCCHH
Q 011792 354 WAPQEE---VLAHQAIGGFLTH---SGWN-STLESMVAGVP---MICWP-QVGDQQVNSRCVSEIWK-IGFDMKDTCDRS 421 (477)
Q Consensus 354 ~~p~~~---ll~~~~~~~~I~H---GG~g-s~~eal~~GvP---~l~~P-~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~ 421 (477)
++|+.+ ++..+++ +|.- -|+| +..|++++|+| +++++ +.+ .+.. +| -|+.+ ...+.+
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~----l~~~allV-nP~D~~ 431 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS----LGAGALLV-NPWNIT 431 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh----hcCCeEEE-CCCCHH
Confidence 445444 6666777 6644 4776 77799999999 34443 322 2211 34 35555 457999
Q ss_pred HHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 422 TIEKLVRDLMD-NKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 422 ~l~~~v~~ll~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
+++++|.++|+ +. +.-+++.+++.+.++.. +...-++.+++++.+.
T Consensus 432 ~lA~AI~~aL~m~~-~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 432 EVSSAIKEALNMSD-EERETRHRHNFQYVKTH-----SAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHH
Confidence 99999999999 41 34455555566555543 3345566777666443
No 176
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=75.74 E-value=16 Score=33.61 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
|||+++...+-| ..|++.|.++|+ |++-+..++...+..... +......
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~--------~~~~v~~----------------- 49 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPEL--------PGLEVRV----------------- 49 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhcccc--------CCceEEE-----------------
Confidence 577777665554 478999999999 665555455444332110 0011100
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEE
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITF 137 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~ 137 (477)
..+- ....+.+++++. ++|+||==..-+ .+..+|+.+|||++.+
T Consensus 50 ---G~lg--~~~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 50 ---GRLG--DEEGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ---CCCC--CHHHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 0000 345677777766 888877433333 3567899999999996
No 177
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=74.91 E-value=9.8 Score=39.29 Aligned_cols=74 Identities=26% Similarity=0.373 Sum_probs=50.7
Q ss_pred CCCceeeccCHHH---HHhccccccccccc---CchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCH
Q 011792 347 ERGCIVSWAPQEE---VLAHQAIGGFLTHS---GWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDR 420 (477)
Q Consensus 347 ~nv~~~~~~p~~~---ll~~~~~~~~I~HG---G~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 420 (477)
..|.+.++....+ ++..+++ +|.=+ |.+|..||+.+|+|+| .......| +...=|.-+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---CCH
Confidence 4667778777333 6656565 88766 6789999999999999 22223333 212233333 478
Q ss_pred HHHHHHHHHHHhH
Q 011792 421 STIEKLVRDLMDN 433 (477)
Q Consensus 421 ~~l~~~v~~ll~~ 433 (477)
.+|.+++..+|.+
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999996
No 178
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=74.04 E-value=40 Score=31.93 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCCcee-eccC---HHHHHhcccccccccc--cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCC
Q 011792 347 ERGCIV-SWAP---QEEVLAHQAIGGFLTH--SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCD 419 (477)
Q Consensus 347 ~nv~~~-~~~p---~~~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~ 419 (477)
+++.+. +++| +..+|..||+..|+|+ =|.||+.-.++.|+|+++-- +-+.|.... + .|+-+-.+ +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecCCccc
Confidence 577654 6676 5569999999777775 48999999999999999763 334444433 4 58887655 6888
Q ss_pred HHHHHHHHHHHHh
Q 011792 420 RSTIEKLVRDLMD 432 (477)
Q Consensus 420 ~~~l~~~v~~ll~ 432 (477)
...+.++=+++..
T Consensus 281 ~~~v~e~~rql~~ 293 (322)
T PRK02797 281 EDIVREAQRQLAS 293 (322)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887555544
No 179
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.78 E-value=8.6 Score=33.65 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHh
Q 011792 14 FPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCS 91 (477)
Q Consensus 14 ~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (477)
..+-|-++-..+|+++|.++ |+.|.+-++............ . +.+...-+| . +
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~-----~--~~v~~~~~P----~-------D------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL-----P--DRVDVQYLP----L-------D------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG------G--GG-SEEE--------------S-------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC-----C--CCeEEEEeC----c-------c-------
Confidence 34459999999999999987 899988887443222221110 0 012222232 0 1
Q ss_pred hchhcHHHHHHHHhcCCCCCeEEEECCCcchH--HHHHHHcCCCeEEE
Q 011792 92 NKPVSKLAFRQLLMTPGRLPTCIISDSIMSFA--IDVAEELNIPIITF 137 (477)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~--~~~A~~lgiP~v~~ 137 (477)
....++.+++.. +||++|.-....|. ...|+..|||++.+
T Consensus 83 ----~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 83 ----FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp ----SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEE
T ss_pred ----CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 123345555555 88998888878765 45677789999986
No 180
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.17 E-value=23 Score=34.00 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=32.4
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+||++++. ||-|-..-..++|-.|++.|..|.+++++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 57888887 777998889999999999999888887754
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.86 E-value=7.9 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.-++++..+...|...+..+|+.|.++|..|...=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 678889999999999999999999999999987643
No 182
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.48 E-value=24 Score=35.62 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
...+.+.++.. +||++|... ....+|+++|||++.+
T Consensus 366 ~~e~~~~i~~~--~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 366 LWHLRSLLFTE--PVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHHHhhc--CCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 34566666665 899999987 4678999999999875
No 183
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=72.17 E-value=99 Score=30.00 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHh--CCCcEEEEEecCCcCCCCCCCCCchhhHh--hhcCCCceeeccCHHH---HHhcccccccccc
Q 011792 300 LSGDQILEFWHGIVN--SGKGFLWVIRSDLIDGESGVGPVPAELDQ--GTKERGCIVSWAPQEE---VLAHQAIGGFLTH 372 (477)
Q Consensus 300 ~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~p~~~---ll~~~~~~~~I~H 372 (477)
...+++-.++..+-+ ...+|++.-.++.. ..-++-.| .+.+.+.+.+-+|++. +|.+-++ |++-
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~-------i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--Flnt 278 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKR-------IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNT 278 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCccc-------chHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--Eecc
Confidence 445666665555544 24466555433211 11111111 2346788889999876 6777776 7765
Q ss_pred cC----chhHHHHhhcCCceecC
Q 011792 373 SG----WNSTLESMVAGVPMICW 391 (477)
Q Consensus 373 GG----~gs~~eal~~GvP~l~~ 391 (477)
+= .-++.||..+|.|+|..
T Consensus 279 SlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 279 SLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEe
Confidence 43 23678999999999875
No 184
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.77 E-value=8.2 Score=30.75 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|+++.+.+..-|-.-+.-|+..|.++||+|.++-.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 478999999999999999999999999999998854
No 185
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=70.06 E-value=13 Score=32.76 Aligned_cols=114 Identities=18% Similarity=0.059 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHHH
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLAF 100 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (477)
.-...+.+.+..+|-+|.|+.+......+.+..- ...+...+.-.-++ +...........+..+.......+
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a---~~~~~~~i~~rw~~-----G~LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFA---ERTGSFYVNGRWLG-----GTLTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH---HHcCCeeecCeecC-----CcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344555777788999999998755444433111 00011001101111 111111111122222221111223
Q ss_pred HHHHhc---CCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCch
Q 011792 101 RQLLMT---PGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 101 ~~~l~~---~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 142 (477)
...+.. ....||+||.-.... .+..=|..+|||+|.+.-+..
T Consensus 115 ~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 115 EKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 333322 333899988766333 677889999999999865543
No 186
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=69.83 E-value=24 Score=36.62 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=45.9
Q ss_pred CHHHHHhccccccccc---ccCc-hhHHHHhhcCCceecCCccc-hhhhhHHHHhhhh-ceeeecc-C-----CCCHHHH
Q 011792 356 PQEEVLAHQAIGGFLT---HSGW-NSTLESMVAGVPMICWPQVG-DQQVNSRCVSEIW-KIGFDMK-D-----TCDRSTI 423 (477)
Q Consensus 356 p~~~ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~-DQ~~na~rv~~~~-G~G~~l~-~-----~~~~~~l 423 (477)
+..+++..|++ +|. +=|+ -++.||+++|+|+|.....+ .... ..+...- ..|+.+. + .-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHH
Confidence 46677877887 655 4554 49999999999999987632 2211 1121211 1455554 1 2346778
Q ss_pred HHHHHHHHh
Q 011792 424 EKLVRDLMD 432 (477)
Q Consensus 424 ~~~v~~ll~ 432 (477)
++++.++++
T Consensus 543 a~~m~~~~~ 551 (590)
T cd03793 543 TQYMYEFCQ 551 (590)
T ss_pred HHHHHHHhC
Confidence 888888876
No 187
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=69.14 E-value=47 Score=28.62 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=60.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
--|.+++..+.|-..-.+.+|-..+.+|++|.++..-... ...+.. ...... ++.+.....++.... .+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~---~~~GE~-~~l~~~-~~~~~~~g~g~~~~~----~~~~ 76 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA---WPNGER-AAFEPH-GVEFQVMGTGFTWET----QNRE 76 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---cccChH-HHHHhc-CcEEEECCCCCeecC----CCcH
Confidence 3477788889999999999999999999999887531110 000110 111222 488888776554322 1111
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
.... ..+......++.+.+. .+|+||-|....
T Consensus 77 ~~~~-~~~~~~~~a~~~l~~~--~~DlvVLDEi~~ 108 (173)
T TIGR00708 77 ADTA-IAKAAWQHAKEMLADP--ELDLVLLDELTY 108 (173)
T ss_pred HHHH-HHHHHHHHHHHHHhcC--CCCEEEehhhHH
Confidence 1111 1222334455555543 899999998653
No 188
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.05 E-value=44 Score=31.19 Aligned_cols=102 Identities=10% Similarity=-0.036 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCccchhccCCCcccccccCCCCe-EEEeCCCCCCCCCCCCCCC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAG--FRITFVNTDQYHDRLFGNTDVTAFYKHFPNF-LCTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 84 (477)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.+.... .+ ++..++... ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p----------~id~v~~~~~~~------~~~~ 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP----------EVDRVIVLPKKH------GKLG 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC----------ccCEEEEcCCcc------cccc
Confidence 589999999999999999999999974 8999999976655544322 23 223332110 0000
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
+..+ ..+...++.. ++|+++.-........++...+++...
T Consensus 65 ----~~~~-----~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 65 ----LGAR-----RRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ----hHHH-----HHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 0111 1122223323 899999887766555566677776644
No 189
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=67.91 E-value=48 Score=30.53 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
++|+++...+-| ..||+.|.++|+.|++.+..++.. ... . ......
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~-~----------~~~v~~----------------- 48 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD-L----------PGPVRV----------------- 48 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc-C----------CceEEE-----------------
Confidence 567777666555 478999999999988877644322 000 0 011000
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc-------hHHHHHHHcCCCeEEE
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS-------FAIDVAEELNIPIITF 137 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~-------~~~~~A~~lgiP~v~~ 137 (477)
..+ .....+.+++.+. ++++|| |..-+ .+..+|+.+|||++++
T Consensus 49 ---G~l--~~~~~l~~~l~~~--~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 49 ---GGF--GGAEGLAAYLREE--GIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ---CCC--CCHHHHHHHHHHC--CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 000 0345677777766 888866 44333 3567899999999996
No 190
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=67.86 E-value=42 Score=30.70 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
++|+++-..+ =...|++.|...++.+++.+..++...+..... .. .
T Consensus 3 ~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~---------~~---~----------------- 48 (257)
T COG2099 3 MRILLLGGTS-----DARALAKKLAAAPVDIILSSLTGYGAKLAEQIG---------PV---R----------------- 48 (257)
T ss_pred ceEEEEeccH-----HHHHHHHHhhccCccEEEEEcccccccchhccC---------Ce---e-----------------
Confidence 4566654333 247899999999988888877554333222110 00 0
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEE
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITF 137 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~ 137 (477)
... ....+.+.+++++. +.|+||=-..-+ -++.+|+..|||++.+
T Consensus 49 --~~G--~l~~e~l~~~l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 49 --VGG--FLGAEGLAAFLREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred --ecC--cCCHHHHHHHHHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 000 01356788899887 888887544444 2567899999999995
No 191
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.67 E-value=84 Score=27.43 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=27.3
Q ss_pred EEEEEcC---CC-CCCHHH-HHHHHHHHHhCCCeEEEEeCCcc
Q 011792 8 HVVLLPF---PA-YGHIKP-MLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 8 ~il~~~~---~~-~GHv~p-~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
||+++-. |+ +|=+-- .-.|+..|+++||+|+++|....
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~ 45 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDY 45 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCC
Confidence 5666654 33 466644 45688889999999999998554
No 192
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=67.22 E-value=12 Score=37.58 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=54.9
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPR 80 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (477)
|+. +||||++-.+++-| +|++.|.+.++-+.+++.+.+.... . . .... ..+
T Consensus 1 ~~~--~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~-~-------------~--~~~~-~~~----- 51 (426)
T PRK13789 1 MQV--KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFP-D-------------D--ELLP-ADS----- 51 (426)
T ss_pred CCC--CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHh-c-------------c--cccc-ccC-----
Confidence 664 48999999999777 6899999998655555554542110 0 0 0000 000
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcch---HHHHHHHcCCCeE
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSF---AIDVAEELNIPII 135 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~v 135 (477)
.-......+.++.++. ++|+||.+.-... ...+++.+|||++
T Consensus 52 -----------~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 52 -----------FSILDKSSVQSFLKSN--PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred -----------cCcCCHHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 0001223444555555 8999999775543 3456677999965
No 193
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=67.16 E-value=93 Score=30.07 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCce-eeccC---HHHHHhcccccccccc--cCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc-CCCC
Q 011792 347 ERGCI-VSWAP---QEEVLAHQAIGGFLTH--SGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-DTCD 419 (477)
Q Consensus 347 ~nv~~-~~~~p---~~~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-~~~~ 419 (477)
+|+.+ .+++| +..+|..|++..|+|. =|+|++.-.|..|+|+++- .+-+.|-... + .|+=+... ..++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-E-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-h-CCCeEEeccccCC
Confidence 47765 47887 4558999999666664 5899999999999999875 3344444443 5 48877666 7999
Q ss_pred HHHHHHHHHHHHh
Q 011792 420 RSTIEKLVRDLMD 432 (477)
Q Consensus 420 ~~~l~~~v~~ll~ 432 (477)
...|.++=+.+..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888866
No 194
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=66.88 E-value=39 Score=30.29 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=27.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|++... +..|-..-.+.|++.|+++|++|.++=+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 444444 4569999999999999999999988753
No 195
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=66.05 E-value=13 Score=31.76 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=29.5
Q ss_pred hhchhcHHHHHHHHhcCCCCCeEEEECCCcchHH-H--H-HHH-c-CCCeEEEcc
Q 011792 91 SNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAI-D--V-AEE-L-NIPIITFRP 139 (477)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~-~--~-A~~-l-giP~v~~~~ 139 (477)
.+.......+.+++++. +||+||+........ . + .+. + ++|++.+.+
T Consensus 72 ~~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 33444456788888876 999999999775333 1 1 122 3 477766533
No 196
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.95 E-value=9.9 Score=31.39 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
+.||++.+.+..||-....-+++.|++.|.+|.....
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 7899999999999999999999999999999998765
No 197
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=65.58 E-value=26 Score=33.90 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCC-----CHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYG-----HIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF 81 (477)
Q Consensus 7 ~~il~~~~~~~G-----Hv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (477)
..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+...+... . ++...
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~------~------------~~~~~--- 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK------G------------LPNAV--- 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH------h------------cCCcc---
Confidence 567777773432 234589999999999999999888643333222110 0 00000
Q ss_pred CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCc
Q 011792 82 GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 141 (477)
. ..-+....++.++++ ..|++|+.- .+...+|..+|.|+|.+....
T Consensus 235 -----~---l~~k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 235 -----I---LAGKTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -----c---cCCCCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0 001113345555655 678888764 468899999999999986543
No 198
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=65.26 E-value=25 Score=27.20 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIIT 136 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~ 136 (477)
...+.++.++. ++|+||..+-.+ .....-+..|||++.
T Consensus 51 ~~~l~~~a~~~--~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKEN--KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHT--TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHc--CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 34566666666 999999998666 456777778999764
No 199
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=64.63 E-value=12 Score=34.27 Aligned_cols=99 Identities=6% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCcEEEEEecCcc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCc-eeeccC---H
Q 011792 285 PSRSVLYVSFGSFI---KLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGC-IVSWAP---Q 357 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~~p---~ 357 (477)
.+++.|.+..|+.. ..+.+....+++.+.+.+.++++..+..... ...-....+..+.++. +.+-.. .
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE-----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH-----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH-----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 35677888888765 3778889999999988775655444221000 0000011111112222 222222 3
Q ss_pred HHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 358 EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 358 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
..++.++++ +|+. ..|.++-|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 347878886 8887 789999999999999988
No 200
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=63.95 E-value=53 Score=33.34 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=62.1
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
+|+|... ++.|-..-...|++.|+++|++|..+-+... .+.. .+...-.+.+..+... .
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd--~~d~--------------~~~~~~~g~~~~~ld~----~ 64 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD--YIDP--------------AYHTAATGRPSRNLDS----W 64 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC--cccH--------------HHHHHHhCCCcccCCc----e
Confidence 4555544 4558999999999999999999998866321 0000 0000000111111100 0
Q ss_pred HHHHhhchhcHHHHHHHHhcCCCCCeEEEECCC------------cchHHHHHHHcCCCeEEEccCc
Q 011792 87 DWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI------------MSFAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 141 (477)
......+.+.+.....+.|++|++.. ....+.+|+.++.|++.+....
T Consensus 65 -------~~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 -------MMGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -------eCCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 00123455555543337899997554 1246789999999999998654
No 201
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=63.77 E-value=19 Score=36.29 Aligned_cols=122 Identities=10% Similarity=0.109 Sum_probs=76.3
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhCCC-cEEEEEecCCcCCCCCCCCCchhhH--hhhcCCCcee-eccC--HHH
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNSGK-GFLWVIRSDLIDGESGVGPVPAELD--QGTKERGCIV-SWAP--QEE 359 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~-~~~p--~~~ 359 (477)
...++++| +.+.++.+....+..+. .|=+.... ...+.+. ++. +|+.+. ++.+ -..
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t----------e~s~kL~~L~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT----------EMSSKLMSLDKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC----------cccHHHHHHHhc-CCcEEECCcChHHHHH
Confidence 33566666 36777777777777553 44223311 1112221 233 676665 6666 345
Q ss_pred HHhcccccccccccCc--hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 360 VLAHQAIGGFLTHSGW--NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~--gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
++..|++-+-|+||+. .++.||+.+|+|++..=...... ..+ .. |-.. ..-+.+++.++|.++|++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~-~~~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF-EHNEVDQLISKLKDLLND 411 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee-cCCCHHHHHHHHHHHhcC
Confidence 9999999888999774 79999999999999874322111 122 21 2222 335689999999999997
No 202
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=62.24 E-value=39 Score=32.90 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=60.2
Q ss_pred CCcEEEEEecCcc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhc-CC-CceeeccC---H
Q 011792 286 SRSVLYVSFGSFI---KLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTK-ER-GCIVSWAP---Q 357 (477)
Q Consensus 286 ~~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~~p---~ 357 (477)
+++.|.+..|+.. ..+.+.+.++++.+...+.++++..+....+ ........+... .+ +-+.+-.+ -
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e-----~~~~~~i~~~~~~~~~~~l~g~~sL~el 256 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD-----LACVNEIAQGCQTPPVTALAGKTTFPEL 256 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH-----HHHHHHHHHhcCCCccccccCCCCHHHH
Confidence 3467888888764 3778888899999877777766654321000 000011111111 12 22333333 3
Q ss_pred HHHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 358 EEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 358 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
..++.++++ ||++ -.|-++=|.+.|+|+|.+
T Consensus 257 ~ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 257 GALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 348888887 9988 789999999999999865
No 203
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.21 E-value=55 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 011792 13 PFPAYGHIKPMLSLAKLFSHAGFRITFV 40 (477)
Q Consensus 13 ~~~~~GHv~p~l~La~~L~~rGH~Vt~~ 40 (477)
+.++-|-..-.+.|++.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456688899999999999999999986
No 204
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=61.80 E-value=28 Score=37.84 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=63.8
Q ss_pred eeeccCHHH---HHhcccccccccc---cCc-hhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHH
Q 011792 351 IVSWAPQEE---VLAHQAIGGFLTH---SGW-NSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTI 423 (477)
Q Consensus 351 ~~~~~p~~~---ll~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l 423 (477)
+.+++++.+ ++..+++ ++.- -|+ .++.|++++|+|-..+|...+--.-+..+ .-|+.+ ...+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv-~P~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLV-NPNDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEE-CCCCHHHH
Confidence 446788776 5556676 6653 354 47899999977522222222211111122 225554 45689999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 424 EKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 424 ~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
+++|.++|++..++.+++.+++.+.+++ -+...-++++++.+...
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 9999999983113445555555555443 24455677777766554
No 205
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=61.79 E-value=31 Score=31.34 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEEccCchhh
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITFRPYSAYC 144 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~ 144 (477)
-||++++.-... -|+.=|.++|||+|.+.-+.+-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 599876654344 67888999999999986655433
No 206
>PRK12342 hypothetical protein; Provisional
Probab=61.29 E-value=14 Score=34.08 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEEccC
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~ 140 (477)
...|.+.++.. .||+|++..... -+..+|+.||+|++.+...
T Consensus 98 a~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 AKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 34566666654 699999987665 3789999999999997543
No 207
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=61.23 E-value=68 Score=32.15 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEc
Q 011792 110 LPTCIISDSIMSFAIDVAEELNIPIITFR 138 (477)
Q Consensus 110 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 138 (477)
+||++|... .+..+|+++|||.+.+.
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 999999884 57889999999999853
No 208
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=61.04 E-value=12 Score=36.66 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCCcee-eccCHHHHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc------CCCC
Q 011792 347 ERGCIV-SWAPQEEVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK------DTCD 419 (477)
Q Consensus 347 ~nv~~~-~~~p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~------~~~~ 419 (477)
+++..+ +..+-.++|..+++ +||=- .+.+.|.+..++|++....-.|..... .|.-.... .--+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCC
Confidence 455554 44567889999888 99985 568899999999999887666655222 24443331 1357
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQIAKMARD 451 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~ 451 (477)
.++|.++|..++++. ..++++.+++.+.+-.
T Consensus 323 ~~eL~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 323 FEELIEAIENIIENP-DEYKEKREKFRDKFFK 353 (369)
T ss_dssp HHHHHHHHTTHHHHH-HHTHHHHHHHHHHHST
T ss_pred HHHHHHHHHhhhhCC-HHHHHHHHHHHHHhCC
Confidence 899999999998862 3456666777777643
No 209
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=60.64 E-value=51 Score=31.71 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCC---CH--HHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYG---HI--KPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF 81 (477)
Q Consensus 7 ~~il~~~~~~~G---Hv--~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (477)
.-|++.|..+.| .| .-+..|++.|.++|.+|.++.++...+....... ..+ ..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~--------------~~~----~~---- 232 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA--------------LLP----GE---- 232 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH--------------hCC----cc----
Confidence 446666654333 22 3588999999989999998877544332211000 000 00
Q ss_pred CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 82 GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
.....-+....++..+++ +-|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 233 ------~~~l~g~~sL~el~ali~----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 233 ------LRNLAGETSLDEAVDLIA----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ------cccCCCCCCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 000001113455666666 678999875 4688999999999998755
No 210
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=60.39 E-value=23 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCch
Q 011792 109 RLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 109 ~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 142 (477)
..||+||+-...- .++.=|.++|||+|.+.=+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 3799887755343 788889999999999865544
No 211
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=60.15 E-value=15 Score=33.90 Aligned_cols=42 Identities=24% Similarity=0.086 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEEccC
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~ 140 (477)
...|.+.+++. .||+|++..... -+..+|+.||+|++.+...
T Consensus 101 A~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 101 ASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 44566667764 699999976554 5788999999999997554
No 212
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=60.11 E-value=55 Score=33.16 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=63.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
|+|... .+.|-..-...|++.|+++|++|..+=+... .+.. .+...-.+.+..+. +.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d--~~D~--------------~~~~~~~g~~~~~l----d~-- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPD--YIDP--------------MFHTQATGRPSRNL----DS-- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCC--CCCH--------------HHHHHHhCCchhhC----Cc--
Confidence 445533 4468899999999999999999998855211 0000 00000001111110 00
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCC-------c-----chHHHHHHHcCCCeEEEccCch
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSI-------M-----SFAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~~ 142 (477)
++ .....+.+.+.....+.|++|++.. . ...+.+|+.++.|++.+.....
T Consensus 60 ~~-----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 60 FF-----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred cc-----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 1244555666554447899997765 1 2467899999999999987653
No 213
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.52 E-value=37 Score=31.65 Aligned_cols=95 Identities=11% Similarity=0.151 Sum_probs=58.1
Q ss_pred CcEEEEEecCcc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhh-cCCCc-eeecc--C-HH
Q 011792 287 RSVLYVSFGSFI---KLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGT-KERGC-IVSWA--P-QE 358 (477)
Q Consensus 287 ~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~-~~~~~--p-~~ 358 (477)
++.|.+..|+.. ..+.+....+++.+...+.++++..+.+. . .....+.+.. ..++. +.+-. . ..
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e-~------~~~~~i~~~~~~~~~~~~~~~~~l~e~~ 193 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAE-R------ELAEEIAAALGGPRVVNLAGKTSLRELA 193 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhh-H------HHHHHHHHhcCCCccccCcCCCCHHHHH
Confidence 567777777764 37788889999988877777776543210 0 1111111111 11222 22222 2 34
Q ss_pred HHHhcccccccccccCchhHHHHhhcCCceecC
Q 011792 359 EVLAHQAIGGFLTHSGWNSTLESMVAGVPMICW 391 (477)
Q Consensus 359 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 391 (477)
.++.++++ +|+.- .|+++-|.+.|+|++++
T Consensus 194 ~li~~~~l--~I~~D-sg~~HlA~a~~~p~i~l 223 (279)
T cd03789 194 ALLARADL--VVTND-SGPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 47878887 99984 47888889999999876
No 214
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=59.14 E-value=87 Score=24.70 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=55.5
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHH
Q 011792 11 LLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFC 90 (477)
Q Consensus 11 ~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (477)
+++.... +-.-+.++++.|.+.|.++. + ++...+.+.+.+ +.+..+........
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-a-T~gTa~~L~~~g-----------i~~~~v~~~~~~~~------------ 57 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-A-TEGTADFLLENG-----------IPVTPVAWPSEEPQ------------ 57 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-E-ccHHHHHHHHcC-----------CCceEeeeccCCCC------------
Confidence 4444443 44568899999999999883 4 446566665422 22222110000000
Q ss_pred hhchhcHHHHHHHHhcCCCCCeEEEECCC---------cchHHHHHHHcCCCeEE
Q 011792 91 SNKPVSKLAFRQLLMTPGRLPTCIISDSI---------MSFAIDVAEELNIPIIT 136 (477)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~---------~~~~~~~A~~lgiP~v~ 136 (477)
...+.+.+++++. ++|+||..+. .+.-...|-.+|||++.
T Consensus 58 ----~~~~~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 58 ----NDKPSLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----CCchhHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 0015577777764 9999999543 23456688899999964
No 215
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=59.14 E-value=81 Score=24.57 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcH
Q 011792 18 GHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSK 97 (477)
Q Consensus 18 GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (477)
++-.-++++++.|.+.|+++. +|. ...+.+.+. + +.+..+.... ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-aT~-gT~~~l~~~-g----------i~~~~v~~~~--------------------~~~ 56 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-ATE-GTAKYLQEA-G----------IPVEVVNKVS--------------------EGR 56 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-Ech-HHHHHHHHc-C----------CeEEEEeecC--------------------CCc
Confidence 355678899999999999983 444 555666553 2 3332221000 023
Q ss_pred HHHHHHHhcCCCCCeEEEECCCc-------chHHHHHHHcCCCeEE
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIM-------SFAIDVAEELNIPIIT 136 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~-------~~~~~~A~~lgiP~v~ 136 (477)
+.+.+++++. ++|+||..... +.-.-.|-.+|||++.
T Consensus 57 ~~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 5577777765 89999985422 3456678999999985
No 216
>PRK10490 sensor protein KdpD; Provisional
Probab=59.08 E-value=33 Score=38.28 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++||.+=..||-|-..-|+.-|++|.++|++|++.--+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 68999999999999999999999999999999987553
No 217
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=59.08 E-value=61 Score=32.64 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
.+|+++...+ .....+++.|.+-|-+|..+........... ++ .+..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------------~~----~~~~------ 357 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------------LP----VETV------ 357 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------------CC----cCcE------
Confidence 4677776533 4678899999999999988877443221100 00 0000
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
+.. ....+.+++++. ++|+||.+. ....+|+++|||++.+
T Consensus 358 --~~~-----D~~~l~~~i~~~--~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 358 --VIG-----DLEDLEDLACAA--GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred --EeC-----CHHHHHHHHhhc--CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 000 113456677665 899999987 4578999999999885
No 218
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=58.52 E-value=11 Score=37.14 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.0
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEE
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFV 40 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~ 40 (477)
+|++... .+.|-..-.+.|.++|++||++|-=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 3455444 56699999999999999999998644
No 219
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=58.31 E-value=28 Score=33.40 Aligned_cols=133 Identities=12% Similarity=0.004 Sum_probs=73.4
Q ss_pred CcEEE-EEecCcc--cCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeec--cCH-HHH
Q 011792 287 RSVLY-VSFGSFI--KLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSW--APQ-EEV 360 (477)
Q Consensus 287 ~~~v~-vs~Gs~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p~-~~l 360 (477)
++.|. +-.||.. ..+.+.+.++++.+...+.++++..++.... .......+ ...++.+++- +.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~------~~~~~i~~-~~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEE------QRAKRLAE-GFPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH------HHHHHHHc-cCCcceecCCCCHHHHHHH
Confidence 34444 4444443 3788888999998877677766554321000 11111111 1123333332 333 348
Q ss_pred HhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHH-----HhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 361 LAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRC-----VSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 361 l~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~r-----v~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
+.++++ +|+. ..|.++-|.+.|+|+|++=-..|...++-. .++ ..+..+ ...+++++.+++.++|+
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~--~~~~cm-~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR--SPGKSM-ADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec--CCCccc-ccCCHHHHHHHHHHHhh
Confidence 888887 9987 789999999999999876221121111110 001 001011 47889999999888764
No 220
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.06 E-value=79 Score=31.81 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
...+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 361 ~~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 361 FFDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 35667777766 8999999984 578999999999875
No 221
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=57.58 E-value=46 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=30.0
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 10 VLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 10 l~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
++..-||-|...-...+|..++++|++|.++..+.
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 44445788999999999999999999999998755
No 222
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=56.30 E-value=97 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
.|+.++..+.. .+.+++.|.+-|-+|..+.+.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 37777776664 889999999999999998764
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=55.93 E-value=13 Score=34.37 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
...++|.-.+|.|-..=..+||.+|.++|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3578888889999999999999999988999999998776555433
No 224
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=55.62 E-value=18 Score=36.55 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCc
Q 011792 100 FRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 100 l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 141 (477)
..++.++...+||+|+.....- .|.++++++|||.+.+-.+.
T Consensus 391 ~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 391 EREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp HHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred HHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 3444444334999999987665 68899999999998865543
No 225
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.50 E-value=20 Score=31.82 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+.+|++.+.++-.|-....-++..|.++|++|+++...--.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 46899999999999999999999999999999988764333333
No 226
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=55.17 E-value=37 Score=35.31 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=51.3
Q ss_pred cCHHHHHhccccccccccc-Cc-hhHHHHhhcCCceecCCccc-----hhhhhHHHHhhhhceeeeccCCCCHHHHHHHH
Q 011792 355 APQEEVLAHQAIGGFLTHS-GW-NSTLESMVAGVPMICWPQVG-----DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLV 427 (477)
Q Consensus 355 ~p~~~ll~~~~~~~~I~HG-G~-gs~~eal~~GvP~l~~P~~~-----DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v 427 (477)
+++.+++.-|+++.|-+.= =| =|-+||+++|||.|..=+.+ .+... ... + .|+-+.=++..+.++..+.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~~-~-~GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DPE-E-YGVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HHG-G-GTEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cCc-C-CcEEEEeCCCCCHHHHHHHH
Confidence 3677777777774444411 13 38999999999999987743 22222 222 2 47766555566766666666
Q ss_pred HHHHh-------HhHHHHHHHHHHHHHHH
Q 011792 428 RDLMD-------NKRDKIMESTVQIAKMA 449 (477)
Q Consensus 428 ~~ll~-------~~~~~~~~~a~~l~~~~ 449 (477)
.+.|. ......|++++++++.+
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 65543 12244677777776654
No 227
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=55.11 E-value=1.1e+02 Score=26.71 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=52.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCC-CCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHF-PNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
|.+.+..+.|-.-..+.+|-.-.-+|.+|.++..=.-. -..+.. ...... ..++|+.+++++....... ..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~---~~~GE~-~~~~~~~~~v~~~~~~~g~tw~~~~~----~~ 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG---WKYGEE-AALEKFGLGVEFHGMGEGFTWETQDR----EA 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC---cchhHH-HHHHhhccceeEEecCCceeCCCcCc----HH
Confidence 45555556665554444444444456777776531100 000110 111111 3488998887776654222 12
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
-. ..........++++++. ++|+||.|.+.+
T Consensus 103 d~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 103 DI-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred HH-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 22 22222344556666665 999999999765
No 228
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=55.08 E-value=33 Score=34.54 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
...+.+.+++. +||+||.+.. ...+|+++|+|++.+
T Consensus 360 ~~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 360 LWDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 34566666665 8999999983 478899999999875
No 229
>PRK07206 hypothetical protein; Provisional
Probab=54.97 E-value=53 Score=32.79 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
++|+++-.... -..+++++.++|++|.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777765432 3468999999999999988743
No 230
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=54.92 E-value=19 Score=31.73 Aligned_cols=41 Identities=5% Similarity=-0.064 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
.+||++.-.|+.|=..-...|++.|.++||+|.++.++.-.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 46888777776444443799999999999999999986543
No 231
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.81 E-value=14 Score=32.04 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=38.4
Q ss_pred cccccccccccCchhHHHHhhcCCceecCCccch-----------------------hhhhHHHHhhhhceeeeccCCCC
Q 011792 363 HQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGD-----------------------QQVNSRCVSEIWKIGFDMKDTCD 419 (477)
Q Consensus 363 ~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~D-----------------------Q~~na~rv~~~~G~G~~l~~~~~ 419 (477)
+..++.+|++||...+..... ++|+|-+|...- .......+.+-+|+-+..-.--+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~ 110 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS 110 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECC
Confidence 345555999999999988877 999999997432 22233444333344333322345
Q ss_pred HHHHHHHHHHHHh
Q 011792 420 RSTIEKLVRDLMD 432 (477)
Q Consensus 420 ~~~l~~~v~~ll~ 432 (477)
.+++...+.++..
T Consensus 111 ~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 111 EEEIEAAIKQAKA 123 (176)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776644
No 232
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.57 E-value=20 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=34.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
||++.+.++-.|..-..-++.-|...|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5899999999999999999999999999999998743
No 233
>PHA02542 41 41 helicase; Provisional
Probab=54.47 E-value=14 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+++..-|+-|-....+.+|...++.|+.|.|++-+...+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 56667789999999999999999899999999875444433
No 234
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=54.00 E-value=18 Score=34.55 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.9
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
||++|+.. ||-|-..-..++|-.++++|++|.+++.+..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 45666666 7789999999999999999999999998654
No 235
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=53.96 E-value=1.1e+02 Score=29.03 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
..|.+--.|+.|-=.-.-+|++.|.++||+|-++.-++
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 46778888999999999999999999999999998654
No 236
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=53.90 E-value=17 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|+.. +|||+++-.|+.| ..+|..|.+.||+|+++....
T Consensus 1 ~~~~-~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSE-TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCc-CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 5654 5899999777765 456788999999999998754
No 237
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=53.86 E-value=99 Score=29.85 Aligned_cols=101 Identities=11% Similarity=0.180 Sum_probs=57.4
Q ss_pred CEEEEEcCCCCC----CHHHHHHHHHHHHhCCCeEEEEeCCccchh-ccCCCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYG----HIKPMLSLAKLFSHAGFRITFVNTDQYHDR-LFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF 81 (477)
Q Consensus 7 ~~il~~~~~~~G----Hv~p~l~La~~L~~rGH~Vt~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (477)
..|++.+.++.. ...-+..|++.|.++|.+|.++..+...+. +.+. +. +......
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~------------i~-----~~~~~~~--- 241 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNE------------IA-----QGCQTPR--- 241 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHH------------HH-----hhCCCCc---
Confidence 345565554321 123478999999988999988876431111 1110 00 0000000
Q ss_pred CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 82 GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
.+...-+....++.++++ +-|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 242 ------~~~l~g~~sL~el~ali~----~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 242 ------VTSLAGKLTLPQLAALID----HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred ------ccccCCCCCHHHHHHHHH----hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 000011123456666766 678999884 5789999999999999854
No 238
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.67 E-value=16 Score=31.95 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
||++.-.|+.|=+.-.+.+.++|.++|++|.++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 6777777776766666799999999999999998854
No 239
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.09 E-value=39 Score=32.57 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
|.=++.||.|-.=-...|++.|.++|++|.+++- .+
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR-GY 75 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSR-GY 75 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcC-CC
Confidence 4556778999999999999999999999999986 44
No 240
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=53.08 E-value=16 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|++--+|+.|-.-..-.||++|.+++|+|.-++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4555568999999999999999999999988765
No 241
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=1.9e+02 Score=28.03 Aligned_cols=126 Identities=11% Similarity=-0.020 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
+.|++++..|--||-=.|.-=|..|++.|.+|.++..-+.... ....+.+++.++.++.- +..+. ...-.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~--------e~l~~hprI~ih~m~~l-~~~~~-~p~~~ 81 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL--------EELLNHPRIRIHGMPNL-PFLQG-GPRVL 81 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh--------HHHhcCCceEEEeCCCC-cccCC-Cchhh
Confidence 6899999999999999999999999999999999986432111 11233677999998832 22111 11122
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc-hH----HHHHHHcCCCeEEEccCchhh
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS-FA----IDVAEELNIPIITFRPYSAYC 144 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~-~~----~~~A~~lgiP~v~~~~~~~~~ 144 (477)
...++.++. ....+..++... ++|.++.-.--. .. .......|...++=|....+.
T Consensus 82 ~l~lKvf~Q-fl~Ll~aL~~~~--~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 82 FLPLKVFWQ-FLSLLWALFVLR--PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhHHHHHHH-HHHHHHHHHhcc--CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 233344443 223334444422 888888754322 22 233344577888877766654
No 242
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=52.01 E-value=1.4e+02 Score=25.00 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=71.4
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhcccccc
Q 011792 289 VLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIGG 368 (477)
Q Consensus 289 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 368 (477)
.|-|-+||. .+....+++...|+.++..+-+.+.+. +..|..+.+- + .-+....++.
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~~----------~---~~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLEF----------V---KEYEARGADV 58 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHHH----------H---HHTTTTTESE
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHHH----------H---HHhccCCCEE
Confidence 455666766 377888899999999987765555321 2333322210 0 0111112334
Q ss_pred cccccCch----hHHHHhhcCCceecCCccchhhh----hHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHH
Q 011792 369 FLTHSGWN----STLESMVAGVPMICWPQVGDQQV----NSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIME 440 (477)
Q Consensus 369 ~I~HGG~g----s~~eal~~GvP~l~~P~~~DQ~~----na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~ 440 (477)
||.=.|.. ++..++. -+|+|.+|....+.. ....+..--|+++..-.-=+...-.-...++|.-..+++++
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~ 137 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELRE 137 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHH
Confidence 88887764 4444444 799999998766442 22333222355554431003333333344455411188888
Q ss_pred HHHHHHHHHHH
Q 011792 441 STVQIAKMARD 451 (477)
Q Consensus 441 ~a~~l~~~~~~ 451 (477)
+.+..++.+++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887765
No 243
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=51.51 E-value=33 Score=33.33 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=58.3
Q ss_pred CEEEEEcCCCCC---CH--HHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYG---HI--KPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRF 81 (477)
Q Consensus 7 ~~il~~~~~~~G---Hv--~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (477)
.-|+|.|..+.| +| .-+.+|++.|.++|++|.++..+...+...+... ..+ ...
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~--------------~~~----~~~--- 239 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA--------------ALN----TEQ--- 239 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH--------------hcc----ccc---
Confidence 346666644322 22 2478999999988999998877543322211000 000 000
Q ss_pred CCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 82 GIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
. ...+...-.....++.++++ +-|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 240 ~---~~~~~l~g~~sL~el~ali~----~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 240 Q---AWCRNLAGETQLEQAVILIA----ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred c---cceeeccCCCCHHHHHHHHH----hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 0 00000001113445666666 678999875 4688999999999999854
No 244
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=51.30 E-value=1.6e+02 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
..|++.++. |+-|-..-...||..|++.|++|.++=.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 355555555 4557777788899999999999999844
No 245
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.24 E-value=1.2e+02 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|.++-.++.|-...+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56777788899999999999999999999998764
No 246
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=50.95 E-value=22 Score=32.22 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCCCHHH------------HHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKP------------MLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p------------~l~La~~L~~rGH~Vt~~~~ 42 (477)
|||++...|++-.+.| =.+||++|.++||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 4566555555555533 36789999999999999874
No 247
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.80 E-value=1.3e+02 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
..+.+++++. +||++|.+. ....+|+++|+|++.+..
T Consensus 360 ~e~~~~i~~~--~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIART--EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhh--CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 4567777766 899999998 345578999999988633
No 248
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=50.54 E-value=1.1e+02 Score=31.20 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
..++++...+ ...+++++.|.+.|-+|..+........-.+. + ...+...
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~------------l-----~~~~~~~-------- 373 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKER------------I-----KELMGPD-------- 373 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHH------------H-----HHHcCCC--------
Confidence 4677775443 34557888899999999888764321110000 0 0000000
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEE
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIIT 136 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 136 (477)
....-......+.+++++. +||++|.+. ....+|+++|||++-
T Consensus 374 ---~~v~~d~~~~e~~~~i~~~--~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 374 ---AHMIDDANPRELYKMLKEA--KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred ---cEEEeCCCHHHHHHHHhhc--CCCEEEecC---chhhhhhhcCCCEEE
Confidence 0000011234555666655 899999984 567899999999984
No 249
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=50.53 E-value=1.4e+02 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=21.4
Q ss_pred cccccccCch------hHHHHhhcCCceecCC
Q 011792 367 GGFLTHSGWN------STLESMVAGVPMICWP 392 (477)
Q Consensus 367 ~~~I~HGG~g------s~~eal~~GvP~l~~P 392 (477)
.++++|+|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488888744 7889999999999996
No 250
>PRK05114 hypothetical protein; Provisional
Probab=50.52 E-value=63 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q 011792 436 DKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMAF 475 (477)
Q Consensus 436 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~ 475 (477)
+.-.++++++.+.+.. |=|+..++.-..++++++..
T Consensus 11 eeQQ~AVErIq~LMaq----GmSsgEAI~~VA~eiRe~~~ 46 (59)
T PRK05114 11 EQQQKAVERIQELMAQ----GMSSGEAIALVAEELRANHQ 46 (59)
T ss_pred HHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHh
Confidence 4456777777777766 88888888888888887654
No 251
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=50.35 E-value=62 Score=33.11 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=67.7
Q ss_pred ceeeccCHHH---HHhccccccccc--ccCchhHH-HHhhcCC----ceecCCccchhhhhHHHHhhhhceeeeccCCCC
Q 011792 350 CIVSWAPQEE---VLAHQAIGGFLT--HSGWNSTL-ESMVAGV----PMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCD 419 (477)
Q Consensus 350 ~~~~~~p~~~---ll~~~~~~~~I~--HGG~gs~~-eal~~Gv----P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 419 (477)
.+.+.+|+.+ ++..++| ++|| .-|+|-+. |.++++. |+|+--+.+ |+ +.+.-++.+ +..+
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllV-NP~d 434 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLT-NPYD 434 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEE-CCCC
Confidence 4557788777 4555676 3333 45888554 9999987 555443321 11 123334444 5679
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011792 420 RSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 420 ~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 474 (477)
.++++++|.+.|+...++=+++.+++.+.++.. ....=++.+++++..++
T Consensus 435 ~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 435 PVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSPQA 484 (487)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhhcc
Confidence 999999999999942234456666666666543 23444778888776553
No 252
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=50.22 E-value=66 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc-hHHHHHHHcCCCeEEEccC
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS-FAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (477)
.+.+.+.+++. +||++|+-.+.. -...+-+.....++-++++
T Consensus 68 ~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 68 DEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred hhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 45666777776 999999887543 3444556667777776554
No 253
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=49.97 E-value=18 Score=31.68 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCCHH------------HHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPFPAYGHIK------------PMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~~~~GHv~------------p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+||++...|++-.+. .-..||+++..+|++|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 456665555554443 35789999999999999999853
No 254
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=49.74 E-value=70 Score=27.93 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred cCCccchhhhhHHHHhhhhceeeecc-------------CCCCHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 390 CWPQVGDQQVNSRCVSEIWKIGFDMK-------------DTCDRSTIE----KLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 390 ~~P~~~DQ~~na~rv~~~~G~G~~l~-------------~~~~~~~l~----~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
..|..-||...-..+-|.+.+|+... ..++.+.|+ +.|.+|+.| +.+-+|-+++.+.+.||
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d--~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD--AGIIRHRGKIQAIIGNA 99 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC--chhHHhHHHHHHHHHHH
Confidence 56778888887765557788888873 157888886 788899998 77777777777666654
No 255
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.55 E-value=34 Score=32.91 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=32.6
Q ss_pred hhchhcHHHHHHHHhcCCCCCeEEEECCCcch-------H---HHHHHHcCCCeEEE
Q 011792 91 SNKPVSKLAFRQLLMTPGRLPTCIISDSIMSF-------A---IDVAEELNIPIITF 137 (477)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-------~---~~~A~~lgiP~v~~ 137 (477)
.........+.+++++. +||++|+.+.+.+ + ..+.+.++||++.-
T Consensus 63 en~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 33334556777888877 9999999998762 1 23567899999874
No 256
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.20 E-value=1.4e+02 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
..+.+.++.. +||++|.+. ....+|+++|||++..
T Consensus 346 ~e~~~~i~~~--~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK--KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc--CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 4556666665 899999996 3467899999999854
No 257
>PRK05920 aromatic acid decarboxylase; Validated
Probab=49.13 E-value=25 Score=31.19 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
.+||++.-.|+ +...=...+.+.|.+.||+|.++.+..-...+
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 46787776665 44468899999999999999999996544444
No 258
>PRK08006 replicative DNA helicase; Provisional
Probab=48.83 E-value=44 Score=34.08 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l 49 (477)
+++...|+.|-....+.+|...+ +.|+.|.|++-+--.+.+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 56677789999999999999887 469999999876444444
No 259
>PRK14098 glycogen synthase; Provisional
Probab=48.76 E-value=30 Score=35.49 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCC------CCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAY------GHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~------GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|||++++.-.. |=-.-.-+|.++|+++||+|.++.|
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P 47 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP 47 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC
Confidence 489999875321 3334567889999999999999998
No 260
>PRK05595 replicative DNA helicase; Provisional
Probab=48.61 E-value=53 Score=33.21 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=32.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhcc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRLF 50 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l~ 50 (477)
+++...|+.|-....+.+|..++ +.|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 45667788999999999998876 5799999998865444443
No 261
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.29 E-value=1.4e+02 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
...+.+++++. +||++|... ....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 34566677765 899999874 4577888999999875
No 262
>PRK08760 replicative DNA helicase; Provisional
Probab=48.16 E-value=11 Score=38.56 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSH-AGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~~~~l 49 (477)
+++...|+-|-....+.+|...+. .|+.|.|++.+...+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 566777899999999999998875 59999999886544444
No 263
>PRK14099 glycogen synthase; Provisional
Probab=47.71 E-value=33 Score=35.19 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=45.9
Q ss_pred cCCC-ceeeccCHHH-HH-hccccccccc---ccCch-hHHHHhhcCCceecCCccc--hhhhhHHHHhh--hhceeeec
Q 011792 346 KERG-CIVSWAPQEE-VL-AHQAIGGFLT---HSGWN-STLESMVAGVPMICWPQVG--DQQVNSRCVSE--IWKIGFDM 414 (477)
Q Consensus 346 ~~nv-~~~~~~p~~~-ll-~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~--~~G~G~~l 414 (477)
+.++ .+.+|-.... ++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |--.......+ .-+.|...
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4555 3556633222 22 34565 764 44544 7789999998776654321 21111100000 01467666
Q ss_pred cCCCCHHHHHHHHHH---HHhH
Q 011792 415 KDTCDRSTIEKLVRD---LMDN 433 (477)
Q Consensus 415 ~~~~~~~~l~~~v~~---ll~~ 433 (477)
...+++++.+++.+ +++|
T Consensus 427 -~~~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 427 -SPVTADALAAALRKTAALFAD 447 (485)
T ss_pred -CCCCHHHHHHHHHHHHHHhcC
Confidence 34589999999997 4555
No 264
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.67 E-value=21 Score=31.05 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=32.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+||++.-.|+.|=. -...+.+.|.++|++|.++.++.-.+.+
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 47777777765544 4899999999999999999986654444
No 265
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=47.60 E-value=94 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 011792 24 LSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~~ 43 (477)
.+|...|...||+||+++-.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46788999999999999864
No 266
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=47.43 E-value=1.2e+02 Score=22.66 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHHHHH
Q 011792 23 MLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLAFRQ 102 (477)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (477)
++.+++.|.+.|+++ ++|. .-.+.+.+. + +.+...-... .+ ..+.+.+
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~-G----------i~~~~~~~ki-~~------------------~~~~i~~ 49 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA-G----------LPVKTLHPKV-HG------------------GILAILD 49 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC-C----------CcceeccCCC-CC------------------CCHHHHH
Confidence 468999999999998 4554 555666552 2 2221000000 00 0123556
Q ss_pred HHhcCCCCCeEEEECCCc---------chHHHHHHHcCCCeE
Q 011792 103 LLMTPGRLPTCIISDSIM---------SFAIDVAEELNIPII 135 (477)
Q Consensus 103 ~l~~~~~~~D~vI~D~~~---------~~~~~~A~~lgiP~v 135 (477)
+++.. ++|+||..... +.-.-+|...+||++
T Consensus 50 ~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 50 LIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 66654 99999996532 123457888899976
No 267
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=47.29 E-value=80 Score=20.76 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q 011792 436 DKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMAF 475 (477)
Q Consensus 436 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~ 475 (477)
+.-.++++++.+.+.. |=|+..++..+-+++++...
T Consensus 11 eeQQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 11 EEQQQAVERIQELMAQ----GMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHH
Confidence 4456777778777766 88888888888888887654
No 268
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.27 E-value=1.4e+02 Score=23.44 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHH
Q 011792 19 HIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKL 98 (477)
Q Consensus 19 Hv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (477)
+=.-++.+|+.|...|+++. +|. .-.+.+.+.+ +++..+... +.+ ..+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~-AT~-gTa~~L~~~G-----------i~~~~v~~~-~~~------------------g~~ 57 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF-ATG-GTSRVLADAG-----------IPVRAVSKR-HED------------------GEP 57 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE-ECc-HHHHHHHHcC-----------CceEEEEec-CCC------------------CCc
Confidence 34558899999999999983 443 5566665532 333222100 000 235
Q ss_pred HHHHHHhc-CCCCCeEEEECC--Cc--------chHHHHHHHcCCCeEE
Q 011792 99 AFRQLLMT-PGRLPTCIISDS--IM--------SFAIDVAEELNIPIIT 136 (477)
Q Consensus 99 ~l~~~l~~-~~~~~D~vI~D~--~~--------~~~~~~A~~lgiP~v~ 136 (477)
.+.+++++ . ++|+||.-. .. +.-.-+|-..+||++.
T Consensus 58 ~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 58 TVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 56677765 4 999999843 22 1234568888999987
No 269
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=47.24 E-value=30 Score=30.53 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
+.+|++.+.++-.|-....-++..|..+|.+|+++...--.+.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 4689999999999999999999999999999999987544344433
No 270
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.84 E-value=11 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
||.++-.|..| .++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEeccH
Confidence 35555555444 489999999999999999853
No 271
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=46.66 E-value=2.2e+02 Score=25.68 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=64.9
Q ss_pred EEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc----------cchhccCCCcccccccCCCCeEEEeCCCCCC
Q 011792 8 HVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ----------YHDRLFGNTDVTAFYKHFPNFLCTSIPDGLP 75 (477)
Q Consensus 8 ~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (477)
+.+|++. .+-|-......|++.|..+|++|..+=+-. ....+.+..+. ...+..+..+.+...+.
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~---~~~~~~~~py~f~~P~s 79 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGL---DLSYELINPYRFKEPLS 79 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCC---CcccccccceecCCCCC
Confidence 4445554 345999999999999999999999874310 11111111110 00111222233321111
Q ss_pred CCCCCCCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc---------hHHHHHHHcCCCeEEEccCch
Q 011792 76 PDNPRFGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS---------FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 142 (477)
+ ..-.-.+ -..-....+..-+.....+.|.||++..-- .-..++..+++|+|.+...-.
T Consensus 80 P-------hlAa~~e-g~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~L 147 (223)
T COG0132 80 P-------HLAAELE-GRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKL 147 (223)
T ss_pred c-------HHHHhhc-CCcccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCc
Confidence 1 0000111 011123334443333223889999876433 456899999999999876543
No 272
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=46.35 E-value=32 Score=31.30 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCC-CCH---HHHHHHHHHHHhCCCeEEEEeCCccc-hhccCCCcccccccCCCCeEEEeCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAY-GHI---KPMLSLAKLFSHAGFRITFVNTDQYH-DRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPR 80 (477)
Q Consensus 6 ~~~il~~~~~~~-GHv---~p~l~La~~L~~rGH~Vt~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (477)
+..|+|.+..+. .-- .-+..|++.|.++|.+|.++.++... ........ .. .+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-----~~------------~~~~--- 164 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-----AG------------LQNP--- 164 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-----TT------------HTTT---
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-----Hh------------cccc---
Confidence 355777766554 222 22699999999999888888876541 11111000 00 0000
Q ss_pred CCCChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEccCc
Q 011792 81 FGIYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 141 (477)
.....-.....++..+++ .-|++|+.- .+.+.+|..+|+|++.++...
T Consensus 165 -------~~~~~~~~~l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 165 -------VINLAGKTSLRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -------TEEETTTS-HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred -------eEeecCCCCHHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 000000112344566666 678999875 468999999999999986543
No 273
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.25 E-value=36 Score=27.91 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=37.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
.+|++.+.++-+|-.----++..|.+.|++|.......-.+.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 589999999999999999999999999999999987544444433
No 274
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=45.66 E-value=44 Score=31.99 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|.=++.||.|-.--.+.||+.|++||..|-+++-
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 3446779999999999999999999999999976
No 275
>PRK11519 tyrosine kinase; Provisional
Probab=45.53 E-value=59 Score=35.29 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=30.5
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+.|+++++. |+-|-..-...||..|+..|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 345666655 67788888999999999999999999654
No 276
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=44.94 E-value=16 Score=36.98 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=39.7
Q ss_pred hHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHH---HHHHHHHHHHhHhHHHHHHHHHH
Q 011792 377 STLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRS---TIEKLVRDLMDNKRDKIMESTVQ 444 (477)
Q Consensus 377 s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~---~l~~~v~~ll~~~~~~~~~~a~~ 444 (477)
++.||+++|+|++.+ ++..-+.-| +..--|...+. +++ .+++++.++..| +.++.++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~--p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRD--PELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 789999999999987 333333333 22234444443 555 699999999998 887665543
No 277
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=44.89 E-value=29 Score=30.09 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
||++.-.|+ +...-...+.+.|.++|++|.++.++.-...+
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 566666665 45556679999999999999999986544443
No 278
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=44.80 E-value=19 Score=33.12 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
.-.-.|+++|+++||+|++++|.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 45778999999999999999983
No 279
>PRK06904 replicative DNA helicase; Validated
Probab=44.75 E-value=28 Score=35.48 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=32.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCccchhcc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSH-AGFRITFVNTDQYHDRLF 50 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~~~~l~ 50 (477)
+++...|+-|-....+.+|...+. .|+.|.|++.+-..+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 566777899999999999998875 599999998865444443
No 280
>PRK06749 replicative DNA helicase; Provisional
Probab=44.45 E-value=66 Score=32.38 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
|++...|+-|-....+.+|...+.+|+.|.|++.+-....+
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql 229 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQL 229 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHH
Confidence 56677789999999999999999999999999876444444
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=44.36 E-value=94 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCccch
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHA-GFRITFVNTDQYHD 47 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~~~~~ 47 (477)
-|+++-.+|.|-..-...||..|+.+ |+.|.+++.+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 45666667889999999999999999 99999999876543
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=43.56 E-value=71 Score=31.44 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+++.--|+.|--.-++.++..+..+|..|.+++.++..+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 44555578899999999999999999999999886544443
No 283
>PRK11823 DNA repair protein RadA; Provisional
Probab=42.49 E-value=75 Score=32.17 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=33.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+++.-.|+.|-..-++.++..++++|+.|.+++.++..+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45556678899999999999999899999999987655544
No 284
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.38 E-value=22 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
||++.-.|+.|-..- ..|.+.|.++|++|.++.++.-...+
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 355555555454444 88999999999999999996654444
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=42.25 E-value=1e+02 Score=31.28 Aligned_cols=41 Identities=12% Similarity=0.304 Sum_probs=33.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+++.--|+.|-..-++.++..+..+|+.|.+++.++..+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45555688899999999999999999999999986654444
No 286
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=41.65 E-value=2.5e+02 Score=24.76 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=86.4
Q ss_pred cEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhccccc
Q 011792 288 SVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQAIG 367 (477)
Q Consensus 288 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~ 367 (477)
|+.++.-.... .+.++-.++.+.+...+..+|+..+.. ..+.+.|.++.+..+. =-||++
T Consensus 52 pt~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGyM--------rIL~~~fl~~~~grIl----------NIHPSL- 111 (200)
T COG0299 52 PTVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGYM--------RILGPEFLSRFEGRIL----------NIHPSL- 111 (200)
T ss_pred CEEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcchH--------HHcCHHHHHHhhcceE----------ecCccc-
Confidence 34444433332 455677889999999999988887433 3566666665555332 125777
Q ss_pred ccccccCchhHHHHhhcCCceecCCccc--hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011792 368 GFLTHSGWNSTLESMVAGVPMICWPQVG--DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQI 445 (477)
Q Consensus 368 ~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l 445 (477)
.=.++|..+..+|+.+|+..-.+-.++ +..+.+--+. ...+.+...-|.|+|.+.|...=. .-|-+..+.+
T Consensus 112 -LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~Dt~etl~~RV~~~Eh---~lyp~~v~~~ 184 (200)
T COG0299 112 -LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPGDTAETLEARVLEQEH---RLYPLAVKLL 184 (200)
T ss_pred -ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecCCCCHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 778899999999999999987766433 4555554442 233333334488999988887522 5666666666
Q ss_pred HH
Q 011792 446 AK 447 (477)
Q Consensus 446 ~~ 447 (477)
++
T Consensus 185 ~~ 186 (200)
T COG0299 185 AE 186 (200)
T ss_pred Hh
Confidence 55
No 287
>PRK00784 cobyric acid synthase; Provisional
Probab=41.63 E-value=2.5e+02 Score=28.88 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=28.3
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|++... ..-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4666644 4469999999999999999999987754
No 288
>PRK06321 replicative DNA helicase; Provisional
Probab=41.62 E-value=78 Score=32.31 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l 49 (477)
+++...|+.|-....+.+|...+ +.|..|.|++-+.-...+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 46667789999999999999987 459999999886544444
No 289
>PLN02470 acetolactate synthase
Probab=41.56 E-value=65 Score=33.94 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred EecCcccCC--HHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccC-HHHH-------Hh
Q 011792 293 SFGSFIKLS--GDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAP-QEEV-------LA 362 (477)
Q Consensus 293 s~Gs~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~l-------l~ 362 (477)
+|||....+ ....+.+++.|++.|.+.|+-+.+.... .+-..+. .+++++++.-.. +... ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHh--ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 466655322 2336789999999999999988654211 2222221 112344432211 1111 11
Q ss_pred cccccccccccCc------hhHHHHhhcCCceecCC
Q 011792 363 HQAIGGFLTHSGW------NSTLESMVAGVPMICWP 392 (477)
Q Consensus 363 ~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P 392 (477)
...+.++++|.|- +.+++|...++|+|++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1234458888884 47889999999999995
No 290
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.33 E-value=2e+02 Score=29.75 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
...+++++.+. +||++|.+. .+..+|+.+|||.+.+
T Consensus 426 l~~l~~~l~~~--~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 426 LWHLRSLVFTE--PVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHHhhc--CCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 34566777665 899999987 4678999999999885
No 291
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.29 E-value=90 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=37.7
Q ss_pred hceeeecc--CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 408 WKIGFDMK--DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 408 ~G~G~~l~--~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
+.+.+... ++|+++.|++.|-.+ .+.-+.-.++++..... || ...++++|++++..
T Consensus 93 l~V~L~f~smdDFsP~~Va~qVp~L-----~kLLeaR~~L~~L~~~l---dg--~~~~e~~l~~lL~n 150 (169)
T COG3516 93 LAVDLTFESMDDFSPDAVARQVPEL-----KKLLEARTALADLKGPL---DG--NPAFEELLQDLLKN 150 (169)
T ss_pred eeeeeeecccccCCHHHHHHhhHHH-----HHHHHHHHHHHHHhccc---cC--cHHHHHHHHHHHcC
Confidence 56777776 599999999998877 33333334444444444 66 45788888887754
No 292
>PRK06849 hypothetical protein; Provisional
Probab=41.21 E-value=54 Score=32.44 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+++|++..... .-.+.+++.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57888875333 258999999999999999997753
No 293
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=76 Score=31.10 Aligned_cols=39 Identities=15% Similarity=0.447 Sum_probs=34.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
.=|.|+-.-+.|-...+..+|..+.++|..|.++|.+.|
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF 140 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF 140 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc
Confidence 346677777889999999999999999999999998766
No 294
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.80 E-value=68 Score=26.81 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=56.5
Q ss_pred cCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 011792 390 CWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIED 469 (477)
Q Consensus 390 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 469 (477)
..|=...+-.+|..++++ --++. .-..+.+.+.+.+|+.|. ++-+-++.+++..+.++ |......+.+++-+
T Consensus 77 pyPWt~~~L~aa~el~ee-~eeLs---~deke~~~~sl~dL~~d~-PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVd 148 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DEELS---PDEKEQFKESLPDLTKDT-PKTKVAATRFKKILSKA---GSIVGDAIRDILVD 148 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hhcCC---HHHHHHHHhhhHHHhhcC-CccHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 355566677777777552 22222 224577889999999853 88899999999999998 87777788888888
Q ss_pred HHHhhhc
Q 011792 470 IRLMAFK 476 (477)
Q Consensus 470 ~~~~~~~ 476 (477)
+...+.|
T Consensus 149 v~SEt~k 155 (158)
T PF10083_consen 149 VASETAK 155 (158)
T ss_pred HHHHHHH
Confidence 7766543
No 295
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=40.63 E-value=2e+02 Score=30.97 Aligned_cols=103 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 8 HVVLLPFP-AYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 8 ~il~~~~~-~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
.|++.+.. ..|-..-.+.|++.|.++|.+|-++=|-. .. | +... ...
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~-~~-----------------------p--~~~~------~~~ 51 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIA-QP-----------------------P--LTMS------EVE 51 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcc-cC-----------------------C--CCHH------HHH
Confidence 56666554 45899999999999999999999985411 10 0 0000 000
Q ss_pred HHHHh-hchhcHHHHHHHHhcCCCCCeEEEECCCcc---------hHHHHHHHcCCCeEEEccCch
Q 011792 87 DWFCS-NKPVSKLAFRQLLMTPGRLPTCIISDSIMS---------FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 87 ~~~~~-~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 142 (477)
..+.. -.......+.+.+.....+.|+||+|...+ ....+|+.++.|++.+.....
T Consensus 52 ~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 52 ALLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred HHHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 00000 000111222233333233899999887653 236679999999999987653
No 296
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=40.11 E-value=1.6e+02 Score=29.76 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|||+++-.|++.| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 48999988888766 688899988987777744
No 297
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=40.03 E-value=48 Score=30.73 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|.|++..=||-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5678886688899999999999999999999988543
No 298
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=39.95 E-value=53 Score=31.02 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=33.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|+|++.-=||-|-..-...||..|+++|++|.++=.+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 57888888999999999999999999999999986544
No 299
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.82 E-value=1.9e+02 Score=24.76 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCc-cchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHH
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTDQ-YHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLA 99 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (477)
.-+..|.+...++|.+|.++...+ ..+.+.+ +....+|++.+.....++- .......
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~-----~l~~~yP~l~ivg~~~g~f-----------------~~~~~~~ 92 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAA-----NLRRRYPGLRIVGYHHGYF-----------------DEEEEEA 92 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-----HHHHHCCCeEEEEecCCCC-----------------ChhhHHH
Confidence 335566667777899999998743 2222222 2234566677775542221 1112344
Q ss_pred HHHHHhcCCCCCeEEEECCCcc----hHHHHHHHcCCCeEEEccCch
Q 011792 100 FRQLLMTPGRLPTCIISDSIMS----FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 100 l~~~l~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~v~~~~~~~ 142 (477)
+.+.+++. +||+|++-.-.+ +.....+.++.+ +.+.....
T Consensus 93 i~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 93 IINRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 55555555 999999998887 778888888888 44444433
No 300
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=38.84 E-value=35 Score=29.83 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=33.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCccchhcc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSH-AGFRITFVNTDQYHDRLF 50 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~~~~l~ 50 (477)
+||++.-.|+.| ..=...|.++|.+ .||+|.++.++.-.+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 478877777766 6668999999999 599999999966544443
No 301
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.73 E-value=56 Score=29.28 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+.+|++.+.++-.|-....-++-.|.++|++|+++...--.+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999999875433333
No 302
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=38.47 E-value=2.6e+02 Score=24.20 Aligned_cols=104 Identities=9% Similarity=-0.076 Sum_probs=51.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
-|-+.+..+.|-....+.+|-+=+-+|-+|.++..-.- . ...+.. ......+++.+.....++.............
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg--~-~~~GE~-~~l~~~~~v~~~~~g~~~~~~~~~~~~~~~~ 98 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG--G-IQQGPD-RPIQLGQNLDWVRCDLPRCLDTPHLDESEKK 98 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecC--C-CcchHH-HHHHhCCCcEEEECCCCCeeeCCCcCHHHHH
Confidence 46666777777666555555444446778887764111 0 011111 2223344688887764432211101001111
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
.+. ......++.+.+. .+|+||-|-...
T Consensus 99 ~~~----~~~~~a~~~l~~~--~~dlvVLDEi~~ 126 (178)
T PRK07414 99 ALQ----ELWQYTQAVVDEG--RYSLVVLDELSL 126 (178)
T ss_pred HHH----HHHHHHHHHHhCC--CCCEEEEehhHH
Confidence 222 2233445555543 899999998653
No 303
>PRK09165 replicative DNA helicase; Provisional
Probab=38.47 E-value=69 Score=32.94 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=32.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEeCCccchhccC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHA---------------GFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~r---------------GH~Vt~~~~~~~~~~l~~ 51 (477)
+++...|+.|-....+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5666778889999999999888753 889999988655545433
No 304
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.34 E-value=40 Score=32.44 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|++ .|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 ~~~--~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHH--GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCC--CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 666 4799999766654 57899999999999999773
No 305
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.26 E-value=63 Score=31.97 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=33.4
Q ss_pred HHhhchhcHHHHHHHHhcCCCCCeEEEECCCcch-------H---HHHHHHcCCCeEEEc
Q 011792 89 FCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSF-------A---IDVAEELNIPIITFR 138 (477)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-------~---~~~A~~lgiP~v~~~ 138 (477)
+..........+.+++++. +||++|+.+.+.+ + ..+.+.+|||.+.-.
T Consensus 57 f~en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 57 FGENLEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3333333456777888877 9999999998762 1 235667999998854
No 306
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.25 E-value=3.3e+02 Score=25.26 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLP 75 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (477)
++||+++..++...-. .+.++|.+.|.+|.++......+. ......++..-+|.+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~----------~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAE----------RKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccc----------ccchhhCCEEEECCCCC
Confidence 4799999998875443 557899899999998876321110 01123477777776643
No 307
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.20 E-value=63 Score=31.98 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcch-------H---HHHHHHcCCCeEEEc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSF-------A---IDVAEELNIPIITFR 138 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-------~---~~~A~~lgiP~v~~~ 138 (477)
++..........+.+++++. +||++|+.+.+.+ + ..+.+.+|||.+.-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 33433344556777888877 9999999998762 1 235667999998854
No 308
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=37.94 E-value=55 Score=30.33 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=31.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|+|++..=||-|-..-...||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 567888668889999999999999999999998844
No 309
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.87 E-value=1.3e+02 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.3
Q ss_pred cHHHHHHHHhcCCCCCeEEEECCCcch---HHHHHHHcCCCeEE
Q 011792 96 SKLAFRQLLMTPGRLPTCIISDSIMSF---AIDVAEELNIPIIT 136 (477)
Q Consensus 96 ~~~~l~~~l~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~v~ 136 (477)
....++.++++.. +-++.+.|..+.+ +..+|+..|||++.
T Consensus 136 n~~aM~~~m~~Lk-~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 136 NEDAMEKLMEALK-ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred cHHHHHHHHHHHH-HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3455566666644 7899999998883 56789999999987
No 310
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.53 E-value=69 Score=26.18 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+.||++...++.+|-..---++..|...|++|......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 58999999999999999999999999999999988754
No 311
>PRK07236 hypothetical protein; Provisional
Probab=37.52 E-value=61 Score=31.92 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|.++++++|+|+-.|- -=+.+|..|+++|++|+++=-
T Consensus 1 ~~~~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHMSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEec
Confidence 7777678999887763 347889999999999999864
No 312
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.48 E-value=57 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++||.+=..||-|-...|+.=|++|.++|.+|++..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999999999999999997653
No 313
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=37.18 E-value=73 Score=27.01 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=27.9
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 011792 289 VLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVI 323 (477)
Q Consensus 289 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 323 (477)
.+|+++||-...+...++..+.++.+.+.--|+..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999998888888999999988775334443
No 314
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=36.80 E-value=1.4e+02 Score=29.01 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAY--GHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~--GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
++||++++.|+. |=-.-..++.+.+...|.+|.-+-.
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~ 40 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN 40 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec
Confidence 479999999876 6677789999999999999988755
No 315
>PRK09620 hypothetical protein; Provisional
Probab=36.74 E-value=61 Score=29.43 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCCCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKP------------MLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p------------~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++|++...|++=.+.| =..||++|.++|++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5677666665444322 368999999999999999753
No 316
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=36.36 E-value=73 Score=28.35 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc-------hHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS-------FAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~-------~~~~~A~~lgiP~v~~ 137 (477)
.+.+.+++++...++|+|++|..-. -|..++-.+++|+|-+
T Consensus 76 ~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 76 LPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 4666777777656999999998766 3567777888999996
No 317
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=36.25 E-value=1.4e+02 Score=30.58 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
-+++.-.|+.|--.-.+.++.+.+++|+.|.+++.++..+.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 35666778889999999999999999999999999877666654
No 318
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=36.17 E-value=2e+02 Score=28.64 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=52.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
|||+++-.+++-| +||+.|++.+---.+++.+.| .+ +.. .
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN-------~G----------~a~------------------~ 40 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN-------PG----------TAL------------------E 40 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC-------Cc----------cch------------------h
Confidence 6899999999999 589999987654444444443 11 110 0
Q ss_pred HHHHhhch-hcHHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEE
Q 011792 87 DWFCSNKP-VSKLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIIT 136 (477)
Q Consensus 87 ~~~~~~~~-~~~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~ 136 (477)
..+..... .....+.++.++. ++|++|..+=.+ .....-+..|||++.
T Consensus 41 ~~~~~~~~~~~~~~lv~fA~~~--~idl~vVGPE~pL~~GvvD~l~~~Gi~vFG 92 (428)
T COG0151 41 AYLVNIEIDTDHEALVAFAKEK--NVDLVVVGPEAPLVAGVVDALRAAGIPVFG 92 (428)
T ss_pred hhhccCccccCHHHHHHHHHHc--CCCEEEECCcHHHhhhhHHHHHHCCCceeC
Confidence 00000000 1245566666665 889998887555 345566666788644
No 319
>PHA02754 hypothetical protein; Provisional
Probab=35.94 E-value=73 Score=21.49 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 426 LVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 426 ~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
.+.+++.+ ++|++..+++++.+.++
T Consensus 6 Ei~k~i~e--K~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIME--KDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHH--hHHHHHHHHHHHHHhhC
Confidence 45556667 89999999999999775
No 320
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.91 E-value=2.2e+02 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~ 42 (477)
|||+++-.|++.| +|++.|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899999998877 578888876 999988854
No 321
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.74 E-value=2.6e+02 Score=23.21 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHA--GFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGI 83 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (477)
+++|++... .++=.-++.+++.|.+. |+++ ++|. ...+.+.+..| +.+..+- . +..
T Consensus 4 ~~~v~lsv~--d~dK~~l~~~a~~l~~ll~Gf~l-~AT~-gTa~~L~~~~G----------i~v~~vi---~-~~~---- 61 (142)
T PRK05234 4 RKRIALIAH--DHKKDDLVAWVKAHKDLLEQHEL-YATG-TTGGLIQEATG----------LDVTRLL---S-GPL---- 61 (142)
T ss_pred CcEEEEEEe--ccchHHHHHHHHHHHHHhcCCEE-EEeC-hHHHHHHhccC----------CeeEEEE---c-CCC----
Confidence 466776663 35567788999999999 9995 3444 66677766423 3332220 0 000
Q ss_pred ChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECC--Ccc--------hHHHHHHHcCCCeEEE
Q 011792 84 YTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDS--IMS--------FAIDVAEELNIPIITF 137 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~~~--------~~~~~A~~lgiP~v~~ 137 (477)
...+.+.++++.- +.|+||.-. ... .-.-+|-..|||++.-
T Consensus 62 -----------gg~~~i~~~I~~g--~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 -----------GGDQQIGALIAEG--KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred -----------CCchhHHHHHHcC--ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 0224566777654 899999843 322 2234688899999873
No 322
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.71 E-value=97 Score=30.19 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHhcccccccccccCchh---HHHHhhcCCceecC
Q 011792 360 VLAHQAIGGFLTHSGWNS---TLESMVAGVPMICW 391 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs---~~eal~~GvP~l~~ 391 (477)
++.+-+-+++|++||.-| +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344323334999999986 89999999999874
No 323
>PLN02939 transferase, transferring glycosyl groups
Probab=35.61 E-value=62 Score=35.87 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCEEEEEcCCC-----CC-CHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPA-----YG-HIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~-----~G-Hv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
+|||++++.-. .| =-.-.-.|.++|++.||+|.+++|
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP 523 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLP 523 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 69999987622 12 224467899999999999999998
No 324
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.37 E-value=1.2e+02 Score=27.06 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCCHHHHH---HHHHHHHhCCCeEEEEeCCc-cchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhh
Q 011792 17 YGHIKPML---SLAKLFSHAGFRITFVNTDQ-YHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSN 92 (477)
Q Consensus 17 ~GHv~p~l---~La~~L~~rGH~Vt~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (477)
.||+.+++ .+++-|..+|++|.+++.-. ..+.+..... ....+...+.+.+
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~-------------------------~~g~~p~e~~~~~ 90 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR-------------------------EEGLSWKEVADYY 90 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH-------------------------HcCCCHHHHHHHH
Confidence 48887754 35777888999999998733 2222222111 0112334444444
Q ss_pred chhcHHHHHHHHhcCCCC-CeEEEECCCcchHHHHHHHcCCCe
Q 011792 93 KPVSKLAFRQLLMTPGRL-PTCIISDSIMSFAIDVAEELNIPI 134 (477)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~-~D~vI~D~~~~~~~~~A~~lgiP~ 134 (477)
. ..+.+.++..+.. ||..+-.=...|++++.+.+|-|+
T Consensus 91 ~----~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 91 T----KEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred H----HHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCc
Confidence 4 3455555554333 366666533338888888888665
No 325
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=35.22 E-value=2.9e+02 Score=27.41 Aligned_cols=98 Identities=9% Similarity=0.081 Sum_probs=60.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCC-ccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAG-FRITFVNTD-QYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIY 84 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rG-H~Vt~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 84 (477)
++|+++-.|..|+ .+|+-|+++| ++|+++.-. ...+++..... +.++...++ .
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD----~-------- 56 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELIG--------GKVEALQVD----A-------- 56 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--------ccceeEEec----c--------
Confidence 5788887766554 6799999999 999999864 33444433211 124444332 0
Q ss_pred hHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEEEccCchh
Q 011792 85 TKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIITFRPYSAY 143 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 143 (477)
.-.+.+.+++++ +|+||.=.-.+ ..+.+|-+.|++++-++-....
T Consensus 57 ----------~d~~al~~li~~----~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 57 ----------ADVDALVALIKD----FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred ----------cChHHHHHHHhc----CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch
Confidence 123466677774 47777655444 4555788888888876554443
No 326
>PRK07004 replicative DNA helicase; Provisional
Probab=35.02 E-value=88 Score=31.83 Aligned_cols=41 Identities=10% Similarity=0.275 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l 49 (477)
+++...|+-|-....+.+|..++ +.|+.|.|++-+-..+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 56667789999999999999886 469999999886554444
No 327
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=35.01 E-value=91 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=24.2
Q ss_pred CEEEE-EcCCCCCCHHH--HHHHHHHHHhCCCeE-EEEeC
Q 011792 7 PHVVL-LPFPAYGHIKP--MLSLAKLFSHAGFRI-TFVNT 42 (477)
Q Consensus 7 ~~il~-~~~~~~GHv~p--~l~La~~L~~rGH~V-t~~~~ 42 (477)
||++| +..+.+|+-.. .+.+|+++..+||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 34544 44456666654 677799999999994 66554
No 328
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=35.00 E-value=38 Score=34.33 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
|||+|+--|- --++-|.+|+++||+||++-....
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccCc
Confidence 4677765553 347889999999999999976443
No 329
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.97 E-value=57 Score=25.87 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=30.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++..+.++-.|.....-++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 56777778899999999999999999999998653
No 330
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.89 E-value=28 Score=31.06 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhch--
Q 011792 17 YGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKP-- 94 (477)
Q Consensus 17 ~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 94 (477)
..|+...+.++..++.||=.+.|+++....+.+.+..-. ....+. +.-.-++.-+.. .....+.+.+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~--r~~gy~-~~~~w~~G~lTN--------~~~l~g~~~~~~ 159 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAAR--RAGGYS-HNRKWLGGLLTN--------ARELFGALVRKF 159 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHH--HhcCce-eeeeeccceeec--------chhhcccccccc
Confidence 367788889999999999999999986554444332110 000010 100111100111 0111111111
Q ss_pred hcHHHHHHHHhcCCCCCeEEEE-CCCcc-hHHHHHHHcCCCeEEEccCch
Q 011792 95 VSKLAFRQLLMTPGRLPTCIIS-DSIMS-FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 95 ~~~~~l~~~l~~~~~~~D~vI~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 142 (477)
.+.+...-++... .+|+||+ |.... .|+.=|.+++||+|.+.=+.+
T Consensus 160 ~~~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 160 LSLPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cCCCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 1222223333333 6688877 44444 788899999999999866544
No 331
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.87 E-value=1.7e+02 Score=27.82 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred CEEEEEcCCCC--CCH--HHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCC
Q 011792 7 PHVVLLPFPAY--GHI--KPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFG 82 (477)
Q Consensus 7 ~~il~~~~~~~--GHv--~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (477)
..|++.+.++. =.| .-+.+|++.|.++|.++.+...........+. +. +..+...
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~------------i~-----~~~~~~~---- 238 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAER------------IA-----EALPGAV---- 238 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHH------------HH-----hhCCCCe----
Confidence 45666665432 122 24788999999889998876332221111110 10 0000000
Q ss_pred CChHHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 83 IYTKDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
+. -+....++.++++ +-|++|+.- .+.+.+|..+|+|++.++.
T Consensus 239 -----l~---g~~sL~el~ali~----~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 239 -----VL---PKMSLAEVAALLA----GADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred -----ec---CCCCHHHHHHHHH----cCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 00 0113445566666 678999875 4688999999999999864
No 332
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=34.80 E-value=3e+02 Score=26.71 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGF-RITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH-~Vt~~~~ 42 (477)
..||+++-.|+-| ..+|+.|++.|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4789999888866 788999999998 6776643
No 333
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=34.75 E-value=44 Score=29.81 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCeEEEECCCcch-------HHHHHHHcCCCeEEE
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMSF-------AIDVAEELNIPIITF 137 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~~-------~~~~A~~lgiP~v~~ 137 (477)
.+.+.++.....||+|++|..-.. |..+...+++|+|-+
T Consensus 82 ~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 82 PLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 355666665458999999997763 444555566888886
No 334
>PRK07773 replicative DNA helicase; Validated
Probab=34.72 E-value=59 Score=36.20 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCccchhccC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHA-GFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~~~~~~l~~ 51 (477)
+++..-|+.|-....+.+|...+.+ |..|.|++-+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 5667778999999999999998754 889999988655555443
No 335
>PRK05636 replicative DNA helicase; Provisional
Probab=34.50 E-value=52 Score=33.91 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFS-HAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~l 49 (477)
+++...|+.|-....+.+|...+ +.|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 46677788899999999998876 468999999875444443
No 336
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=34.40 E-value=48 Score=28.54 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHH
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKD 87 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 87 (477)
.|-+.+..+.|-....+.+|-+-+-+|.+|.++..-.. -.. .+........+++.+.....++..... ....
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg---~~~-~GE~~~l~~l~~~~~~~~g~~f~~~~~----~~~~ 76 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG---GRY-SGELKALKKLPNVEIERFGKGFVWRMN----EEEE 76 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS-----SS---HHHHHHGGGT--EEEE--TT----GG----GHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC---CCC-cCHHHHHHhCCeEEEEEcCCcccccCC----CcHH
Confidence 46677777777766555555444556677777764211 000 111022344455888877754433221 1111
Q ss_pred HHHhhchhcHHHHHHHHhcCCCCCeEEEECCCc
Q 011792 88 WFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIM 120 (477)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 120 (477)
- ....+......++.+.+. .+|+||.|-..
T Consensus 77 ~-~~~~~~~~~~a~~~i~~~--~~dlvILDEi~ 106 (172)
T PF02572_consen 77 D-RAAAREGLEEAKEAISSG--EYDLVILDEIN 106 (172)
T ss_dssp H-HHHHHHHHHHHHHHTT-T--T-SEEEEETHH
T ss_pred H-HHHHHHHHHHHHHHHhCC--CCCEEEEcchH
Confidence 1 122222223344444433 89999999855
No 337
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.36 E-value=49 Score=23.30 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 011792 24 LSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~ 42 (477)
+..|..|+++|++|+++=.
T Consensus 9 l~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHCCCcEEEEec
Confidence 5678999999999999965
No 338
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.32 E-value=1.6e+02 Score=25.18 Aligned_cols=66 Identities=6% Similarity=0.112 Sum_probs=36.8
Q ss_pred cccccccccccCc------hhHHHHhhcCCceecCCccch---------h-hhhHHHHhhhhceeeeccCCCCHHHHHHH
Q 011792 363 HQAIGGFLTHSGW------NSTLESMVAGVPMICWPQVGD---------Q-QVNSRCVSEIWKIGFDMKDTCDRSTIEKL 426 (477)
Q Consensus 363 ~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~~~D---------Q-~~na~rv~~~~G~G~~l~~~~~~~~l~~~ 426 (477)
++.+ +++|.|- +++.+|...++|+|++.-..+ | ..+...+.+ .+......-.+++++.+.
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~--~~~k~~~~v~~~~~~~~~ 139 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFR--PVTKWSYRVTSPDDLPEA 139 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHG--GGSSEEEEECSGGGHHHH
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhhcchhc--cccchhcccCCHHHHHHH
Confidence 3455 8888874 477889999999999874221 2 222233322 333222223456666666
Q ss_pred HHHHHh
Q 011792 427 VRDLMD 432 (477)
Q Consensus 427 v~~ll~ 432 (477)
+++.+.
T Consensus 140 ~~~A~~ 145 (172)
T PF02776_consen 140 LDRAFR 145 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 339
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=34.31 E-value=3.1e+02 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 15 PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 15 ~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
...|-..-...|++.|+++|.+|..+=+.
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34588888999999999999999988663
No 340
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.05 E-value=39 Score=31.98 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|||+|+-.|..| ..+|..|++.||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 578888666655 46788899999999999873
No 341
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.89 E-value=60 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCCCCHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 011792 6 VPHVVLLPFPAYGHIKP------------MLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p------------~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
.+||++...|++=.+.| -.+||+++..+|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 47888888888877755 4789999999999999998744
No 342
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.78 E-value=84 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
++++..|..+.-.-+..+++.|+++|..|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566677777777899999999999999999855
No 343
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=33.75 E-value=2.7e+02 Score=31.24 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
..|++++..+. -...+++.|.+-|-+|..++.... ..-.. ..+.+....+
T Consensus 320 GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~-~~~d~----------------~~~~~~~~~~-------- 369 (917)
T PRK14477 320 GKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNS-TLEDF----------------ARMKALMHKD-------- 369 (917)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCC-CHHHH----------------HHHHHhcCCC--------
Confidence 46888876442 356788889899999987654321 10000 0000000000
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
...........+.+++++. +||++|.+. -...+|+++|||++....
T Consensus 370 ---~~vi~~~d~~el~~~i~~~--~pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 370 ---AHIIEDTSTAGLLRVMREK--MPDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred ---CEEEECCCHHHHHHHHHhc--CCCEEEecC---chhhHHHHcCCCeEEccC
Confidence 0001111234566667665 999999966 346689999999997653
No 344
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.59 E-value=59 Score=32.35 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhcc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLF 50 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~ 50 (477)
.+||++.-.|+. ...=...+.+.|.++|++|.++.++.-...+.
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 578888877764 55677899999999999999999866554443
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=33.51 E-value=45 Score=31.51 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|||+++-.|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777666544 5688889999999999986
No 346
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=33.36 E-value=6.6 Score=21.24 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=13.3
Q ss_pred CchhHHHHhhcCCceec
Q 011792 374 GWNSTLESMVAGVPMIC 390 (477)
Q Consensus 374 G~gs~~eal~~GvP~l~ 390 (477)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888765
No 347
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.12 E-value=3.5e+02 Score=29.54 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=29.6
Q ss_pred CEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
.|++.++. |+-|-..-...||..|+..|++|.++=.+
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45554444 67799999999999999999999998654
No 348
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=32.86 E-value=2.8e+02 Score=25.90 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=53.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHH
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDW 88 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (477)
|+++-.|+.|-......|.+.|.+.|.+|.++...... +.... +. .......
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~--------------------y~------~~~~Ek~ 55 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND--------------------YA------DSKKEKE 55 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS--------------------S--------GGGHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh--------------------hh------chhhhHH
Confidence 66677799999999999999999999999998753221 11100 00 0001111
Q ss_pred HHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEEccCchh
Q 011792 89 FCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITFRPYSAY 143 (477)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~~~~ 143 (477)
.+ ......+...+. +-++||+|...+ --..+|+..+.++..++.....
T Consensus 56 ~R---~~l~s~v~r~ls----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 56 AR---GSLKSAVERALS----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HH---HHHHHHHHHHHT----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HH---HHHHHHHHHhhc----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 11 112233444443 338999999886 2457999999999987665443
No 349
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=32.85 E-value=92 Score=30.21 Aligned_cols=139 Identities=16% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhc
Q 011792 284 QPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAH 363 (477)
Q Consensus 284 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~ 363 (477)
.+++.+||++-|--+. .+.....+.+|.+.-..+|-+...-. ..|+ ....||..
T Consensus 128 nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hk---------l~PP----------------a~~~ll~~ 181 (364)
T PRK15062 128 NPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHK---------LVPP----------------AMRALLED 181 (364)
T ss_pred CCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEecc---------ccHH----------------HHHHHHcC
Confidence 4678899999887653 44455556666655444543222100 2222 24456655
Q ss_pred c--cccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHH
Q 011792 364 Q--AIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMES 441 (477)
Q Consensus 364 ~--~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~ 441 (477)
+ .+++||.=|=-.|+.-+ ++ +. .++++.|+-..+ ..|.+.+|..+|..++.. +.+.
T Consensus 182 ~~~~idgfi~PGHVstI~G~---------------~~-y~-~l~~~y~~P~VV-aGFEp~DiL~ai~~lv~q----~~~g 239 (364)
T PRK15062 182 PELRIDGFIAPGHVSTIIGT---------------EP-YE-FLAEEYGIPVVV-AGFEPLDILQSILMLVRQ----LEEG 239 (364)
T ss_pred CCCCccEEEecCEeEEEecc---------------ch-hH-HHHHHcCCCeEE-eccCHHHHHHHHHHHHHH----HHCC
Confidence 4 46777777644433221 11 11 122445555555 347777777777777651 1222
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 011792 442 TVQIAKMARDAVKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 442 a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 472 (477)
-.++--....++.+.| ...+.++|+++.+
T Consensus 240 ~~~v~N~Y~r~V~~eG--N~~A~~~i~~vFe 268 (364)
T PRK15062 240 RAEVENQYTRVVKEEG--NLKAQELIAEVFE 268 (364)
T ss_pred CceEEEccceeeCccc--CHHHHHHHHHHcC
Confidence 2222233333344455 3456666666543
No 350
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=32.48 E-value=48 Score=28.69 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
...+++.-.+|.|-..=..++|+++.++|+.|.|+...+..+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 3578888888999999999999999999999999988666555533
No 351
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=32.36 E-value=96 Score=32.03 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
...-.+++.|..+|++|.+++..+.++.+.+
T Consensus 46 ~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRk 76 (510)
T PRK00750 46 ARTDMVRRALRDLGIKTRLIFFSDDMDGLRK 76 (510)
T ss_pred hhHHHHHHHHHHcCCcEEEEEEEecCCcccc
Confidence 5567889999999999999998776665544
No 352
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.23 E-value=41 Score=30.43 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 19 HIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 19 Hv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|+..|...|++|.++|++|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45779999999999999999998743
No 353
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=32.20 E-value=96 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEEc
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITFR 138 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~ 138 (477)
.+.+.+++. ++|+|++=..-- .|..+|..+|+|++.+.
T Consensus 41 ~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 41 EFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 444444443 799998754333 67889999999999863
No 354
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.20 E-value=89 Score=28.62 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|++... ||-|-..-.-+||..|++.|++|..+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4666665 7889999999999999999999999843
No 355
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.00 E-value=1.1e+02 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
||++..-++.|-......|++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888754
No 356
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=31.84 E-value=89 Score=23.33 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q 011792 419 DRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMAF 475 (477)
Q Consensus 419 ~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~ 475 (477)
..+.|.+.++.-|.+ ...++..+.+....-+. +|.....++++++++...+.
T Consensus 15 e~~~L~~~L~~rL~e--~GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~Ar 66 (86)
T PF10163_consen 15 EYERLKELLRQRLIE--CGWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPKAR 66 (86)
T ss_dssp HHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHHH
Confidence 345666666666664 44556655555544333 55555678899998887765
No 357
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=31.79 E-value=2.1e+02 Score=28.24 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=52.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChH
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTK 86 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 86 (477)
.|+++. |+-...+.|++.|.+.|-+|..+......+.-.+ ...
T Consensus 272 ~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e--------------------------------~~~ 314 (398)
T PF00148_consen 272 KRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEE--------------------------------RLR 314 (398)
T ss_dssp -EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHH--------------------------------HHH
T ss_pred ceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHH--------------------------------HHH
Confidence 567763 3446677899999999999999887543211110 001
Q ss_pred HHHHh-----hchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 87 DWFCS-----NKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 87 ~~~~~-----~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
..+.. +.......+.+++++. +||+++.+. ....+|+.+++|++..
T Consensus 315 ~~~~~~~~~v~~~~~~~~~~~~l~~~--~pdl~ig~~---~~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 315 WLLEESDPEVIIDPDPEEIEELLEEL--KPDLLIGSS---HERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHTTCSEEEESCBHHHHHHHHHHH--T-SEEEESH---HHHHHHHHTT--EEE-
T ss_pred HHhhCCCcEEEeCCCHHHHHHHHHhc--CCCEEEech---hhHHHHHHhCCCeEEE
Confidence 11111 1112345677777765 899999997 3778899998888875
No 358
>PRK13604 luxD acyl transferase; Provisional
Probab=31.78 E-value=90 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFV 40 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~ 40 (477)
+...+++++|..++-..+..+|+.|.++|..|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 34678888888788777999999999999999876
No 359
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=31.60 E-value=85 Score=27.62 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=28.6
Q ss_pred CEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+|++.++. ++-|-..-...||..|+++|++|.++=.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45444443 56688888999999999999999988553
No 360
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.54 E-value=83 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.7
Q ss_pred CEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEe
Q 011792 7 PHVVLLPFPAY--GHIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 7 ~~il~~~~~~~--GHv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
-+|+++|.... .+..-...+++.|++.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 36888887753 456678899999999999998854
No 361
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.25 E-value=66 Score=31.86 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCEEEEEcCC-CC--CCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 6 VPHVVLLPFP-AY--GHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 6 ~~~il~~~~~-~~--GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
+..+.|-|.+ .. ||+.|+..|. .|++.||+|+++.. .++
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLig-d~t 75 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIG-DAT 75 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEec-ccc
Confidence 3567777776 22 8999988774 68999999999987 443
No 362
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=31.11 E-value=1.1e+02 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
...-.+++.|..+|++|.+++..+..+.+.+
T Consensus 42 i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrK 72 (353)
T cd00674 42 ITADLVARALRDLGFEVRLIYSWDDYDRLRK 72 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcCCCcccc
Confidence 4566789999999999999998776655544
No 363
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=30.66 E-value=2.6e+02 Score=26.75 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=23.7
Q ss_pred CCeEEEECCCcc------hHHHHHHHcCCCeEEEccCch
Q 011792 110 LPTCIISDSIMS------FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 110 ~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~~~ 142 (477)
+.|.|..|.... ..+.+|+.+++|++.+.+..-
T Consensus 195 GAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K 233 (310)
T PRK08535 195 GADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYK 233 (310)
T ss_pred CccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccce
Confidence 667777776443 356799999999998755433
No 364
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.29 E-value=2.4e+02 Score=29.25 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=61.0
Q ss_pred CCHHHHHHHH-HHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCC-CCCC------------C----CC
Q 011792 18 GHIKPMLSLA-KLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPD-GLPP------------D----NP 79 (477)
Q Consensus 18 GHv~p~l~La-~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~------------~----~~ 79 (477)
|++.--+.+| +.+.+.|.+|.+.-. ...+.+.+... +..+.++- +++- . ..
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~----------iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLS----------LPVIVIKPTGFDVMQALARARRIASSIGVVTH 105 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCC----------CCEEEecCChhhHHHHHHHHHhcCCcEEEEec
Confidence 6677777888 447777899888765 55666655332 44444431 1110 0 00
Q ss_pred CCCCChHHHHHhhch--------hcHHHHHHHHhc-CCCCCeEEEECCCcchHHHHHHHcCCCeEEEccC
Q 011792 80 RFGIYTKDWFCSNKP--------VSKLAFRQLLMT-PGRLPTCIISDSIMSFAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 80 ~~~~~~~~~~~~~~~--------~~~~~l~~~l~~-~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 140 (477)
.....-...+..++. .......+.+++ ...++++||.|. .+..+|+++|++.|.+.+.
T Consensus 106 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 106 QDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 000011122222222 123444444444 223999999998 4678999999999998663
No 365
>PRK10037 cell division protein; Provisional
Probab=30.24 E-value=76 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=30.0
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|.++.. ||-|-..-...||..|+++|++|.++=.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 4666666 7889999999999999999999999944
No 366
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.23 E-value=58 Score=28.12 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHh-CCCeEEEEeCCccc
Q 011792 9 VVLLPFPAYGHIKP-MLSLAKLFSH-AGFRITFVNTDQYH 46 (477)
Q Consensus 9 il~~~~~~~GHv~p-~l~La~~L~~-rGH~Vt~~~~~~~~ 46 (477)
|++.-.|+ ||... ...+.+.|.+ +||+|.++.++.-.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 44444444 78766 8899999984 69999999995543
No 367
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.04 E-value=6.6e+02 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 6 VPHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 6 ~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+.|++.++. |+-|-..-...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345666655 456778888999999999999999996543
No 368
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.00 E-value=80 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 011792 22 PMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
--+.+|..|+++|.+||++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998744
No 369
>PRK06835 DNA replication protein DnaC; Validated
Probab=29.85 E-value=60 Score=31.31 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
..++|.-.+|.|-..=..++|++|.++|+.|.+++.....+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4577777788888888899999999999999999886654433
No 370
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.85 E-value=3.9e+02 Score=23.57 Aligned_cols=148 Identities=7% Similarity=0.018 Sum_probs=75.1
Q ss_pred cccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhc-CCCceeeccCHH
Q 011792 280 WLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTK-ERGCIVSWAPQE 358 (477)
Q Consensus 280 ~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~p~~ 358 (477)
|++ -.++.++.|+.|.+. ...++.+...+..+.+.- . .+.+.+.+-.+ ..+.......+.
T Consensus 5 ~l~-l~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~----------~~~~~l~~l~~~~~i~~~~~~~~~ 65 (202)
T PRK06718 5 MID-LSNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-P----------ELTENLVKLVEEGKIRWKQKEFEP 65 (202)
T ss_pred EEE-cCCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-C----------CCCHHHHHHHhCCCEEEEecCCCh
Confidence 444 246678888887775 344555656676655443 2 22222222122 234444444445
Q ss_pred HHHhcccccccccccCchhHHHHhh----cCCceecCCccchhhhhH-----HHHhh-hhceeeeccC--CCCHHHHHHH
Q 011792 359 EVLAHQAIGGFLTHSGWNSTLESMV----AGVPMICWPQVGDQQVNS-----RCVSE-IWKIGFDMKD--TCDRSTIEKL 426 (477)
Q Consensus 359 ~ll~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na-----~rv~~-~~G~G~~l~~--~~~~~~l~~~ 426 (477)
.-+..+++ ||.--+...+.+.++ .++++-++ |.+..+ ..+.+ .+-+|+.-.+ ..-+..|++.
T Consensus 66 ~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ 139 (202)
T PRK06718 66 SDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDE 139 (202)
T ss_pred hhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHH
Confidence 55666666 887777665555544 45655443 332222 22211 1223333221 2334667777
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 427 VRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 427 v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
+..++......+-+.+.+++..++..
T Consensus 140 ie~~~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 140 LEALYDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHh
Confidence 77776532245566666666666653
No 371
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=29.43 E-value=97 Score=28.69 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc------hHHHHHHHcCCCeEEEcc
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS------FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~ 139 (477)
...+.+.++.. ++|+|++.--.. -+..+|+.||+|++.+..
T Consensus 100 a~~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 44566777766 899999865443 578999999999998644
No 372
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=29.38 E-value=69 Score=29.16 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCH-HHHHHHHHHHHhC--CCeEEEEeCCccchhc
Q 011792 9 VVLLPFPAYGHI-KPMLSLAKLFSHA--GFRITFVNTDQYHDRL 49 (477)
Q Consensus 9 il~~~~~~~GHv-~p~l~La~~L~~r--GH~Vt~~~~~~~~~~l 49 (477)
|++.-.|+ |+. .=.+.|.+.|.++ ||+|.++.++.-.+.+
T Consensus 2 i~~~itGs-~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 2 IGWGITGA-GHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred eEEEEeCc-cHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 44433343 555 6899999999999 9999999996544333
No 373
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=29.26 E-value=3.7e+02 Score=25.31 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=54.7
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhccc
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQA 365 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~ 365 (477)
++.++.+.+|.+. +.+...+...+.++.+.-+. +...............+.....++..++
T Consensus 151 gk~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~------------~~~~~~~~~~g~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTG-------MTIARTFSALGARVFVGARS------------SADLARITEMGLIPFPLNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCC------------HHHHHHHHHCCCeeecHHHHHHHhccCC
Confidence 4568888888876 67778888888765443321 1111100011122233334456777778
Q ss_pred ccccccccCchhHHHHhhcCC--ceecCCccchhhhhHHHHhhhhceeeec
Q 011792 366 IGGFLTHSGWNSTLESMVAGV--PMICWPQVGDQQVNSRCVSEIWKIGFDM 414 (477)
Q Consensus 366 ~~~~I~HGG~gs~~eal~~Gv--P~l~~P~~~DQ~~na~rv~~~~G~G~~l 414 (477)
+ +|.|-..+.+.+...... -.+++=...+....-...++++|+-..+
T Consensus 212 i--Vint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~ 260 (287)
T TIGR02853 212 I--VINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALL 260 (287)
T ss_pred E--EEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEE
Confidence 7 999887664433322211 1334433332222111233556776663
No 374
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.26 E-value=1.3e+02 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
+.-|+++-.=|.|-.-.+-.||+-|..+|+.|.+++.+.+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 34567777778899999999999999999999999987653
No 375
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=29.18 E-value=2.6e+02 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=33.2
Q ss_pred CHHHHHhcccccccc--c--ccCchhHHHHhhcCCceecCCccch--hhhhHHHHhhhhceeeecc
Q 011792 356 PQEEVLAHQAIGGFL--T--HSGWNSTLESMVAGVPMICWPQVGD--QQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 356 p~~~ll~~~~~~~~I--~--HGG~gs~~eal~~GvP~l~~P~~~D--Q~~na~rv~~~~G~G~~l~ 415 (477)
....++..+++ +| | +...--+..|+.+|+|+++-|...+ |...-... . .++++.+.
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~a-a-~~~~v~~s 114 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEA-A-KKIPVVIA 114 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-h-cCCCEEEE
Confidence 44556655565 55 2 2224556778999999999886543 33222333 3 46776665
No 376
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.16 E-value=90 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++||.|+-.|--| ..|++.|.+.||+|+-+...
T Consensus 10 ~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVG-----TALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 6999999776555 46899999999999887653
No 377
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.15 E-value=5.7e+02 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCC-CCCEEEEEcCCCC--CCH----HHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 1 MEQT-RVPHVVLLPFPAY--GHI----KPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 1 m~~~-~~~~il~~~~~~~--GHv----~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|+-. +-.||+++-.|.. |+. ..-..++++|.+.|++|.++.+..
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 6532 2478888888764 432 356789999999999999997643
No 378
>PRK03094 hypothetical protein; Provisional
Probab=29.03 E-value=51 Score=24.22 Aligned_cols=20 Identities=5% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 011792 23 MLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~ 42 (477)
+..+.+.|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999987754
No 379
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=28.98 E-value=72 Score=30.49 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.4
Q ss_pred CEEEEEcCCC--C-CCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 7 PHVVLLPFPA--Y-GHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 7 ~~il~~~~~~--~-GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
|||+|+.-|- . -+......|.++.++|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 4677766532 1 3445688999999999999999998654
No 380
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.90 E-value=1.3e+02 Score=21.95 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
+++...++.|-..-...|++.|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666777888889999999999999998876
No 381
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.52 E-value=72 Score=30.09 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=35.7
Q ss_pred hcccccccccccCchhHHHHhhc----CCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 362 AHQAIGGFLTHSGWNSTLESMVA----GVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 362 ~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
..+++ +|+-||=||++.+++. ++|++.+-. - .+|.. -+.+.+++.+++.++++
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFL--t~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------G------HLGFL--TDITVDEAEKFFQAFFQ 119 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------C------CcccC--CcCCHHHHHHHHHHHHc
Confidence 34555 9999999999988663 678777621 1 11211 24567788888888876
No 382
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=28.49 E-value=88 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 14 FPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 14 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
-||-|-..-...||..|+++|++|.++-.+..
T Consensus 7 kGG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CCCccHHHHHHHHHhccccccccccccccCcc
Confidence 37889999999999999999999999987543
No 383
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.45 E-value=98 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCeEEEECCCcch--HHHHHHHcCCCeEEEc
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIMSF--AIDVAEELNIPIITFR 138 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~~~--~~~~A~~lgiP~v~~~ 138 (477)
.-++.+++- +||+||....... ....-+..|||++.+.
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 344555553 9999998764432 3444578999998874
No 384
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.44 E-value=1.5e+02 Score=28.11 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=23.2
Q ss_pred CCeEEEECCCcc------hHHHHHHHcCCCeEEEccCc
Q 011792 110 LPTCIISDSIMS------FAIDVAEELNIPIITFRPYS 141 (477)
Q Consensus 110 ~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~~ 141 (477)
+.|.|..|.... ..+.+|+.+++|++.+.++.
T Consensus 190 Gad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 190 GADAITANGALINKIGTSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred CccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccc
Confidence 567777766433 45789999999999975543
No 385
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.42 E-value=80 Score=32.64 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEc
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFR 138 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 138 (477)
..+.+.+++. +||+||.+. ....+|+.+|||++.++
T Consensus 364 ~ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3445666654 899999998 45567899999998864
No 386
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.28 E-value=7.3e+02 Score=26.17 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=48.4
Q ss_pred ccccccccCchhHHHHhh---cCCceecCCccch---hhhhH-HHHhhhh--ceeeec---cCCCCHHHHHHHHHHHHhH
Q 011792 366 IGGFLTHSGWNSTLESMV---AGVPMICWPQVGD---QQVNS-RCVSEIW--KIGFDM---KDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 366 ~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~D---Q~~na-~rv~~~~--G~G~~l---~~~~~~~~l~~~v~~ll~~ 433 (477)
++++|.-.|+-.-+-.+. .-+|+|.+|.... -.+-- ..| + + |+.+.. ++..++.-++..|..+- |
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~-~p~g~pv~~v~i~~~~~aa~~a~~i~~~~-~ 542 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-Q-MPRGVPVATVAIGNATNAGLLAVRMLGAS-D 542 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-c-CCCCCeEEEEecCChHHHHHHHHHHHhcC-C
Confidence 445888888643333332 3589999998532 22211 222 3 4 533222 23455555554443222 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcC
Q 011792 434 KRDKIMESTVQIAKMARDAVKEG 456 (477)
Q Consensus 434 ~~~~~~~~a~~l~~~~~~~~~~g 456 (477)
+.++++.+..++.+++.+.+.
T Consensus 543 --~~~~~~~~~~~~~~~~~~~~~ 563 (577)
T PLN02948 543 --PDLLDKMEAYQEDMRDMVLEK 563 (577)
T ss_pred --HHHHHHHHHHHHHHHHHHHhh
Confidence 888999999988888765444
No 387
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.28 E-value=4.2e+02 Score=23.44 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=72.9
Q ss_pred cccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhh-hcCCCceeeccCHH
Q 011792 280 WLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQG-TKERGCIVSWAPQE 358 (477)
Q Consensus 280 ~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~ 358 (477)
|++- .++.++.|+.|... ..-+..+...|..+.+.-. .+.+.+.+- ...++.+..--.+.
T Consensus 4 ~l~l-~gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-----------~~~~~l~~l~~~~~i~~~~~~~~~ 64 (205)
T TIGR01470 4 FANL-EGRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-----------ELESELTLLAEQGGITWLARCFDA 64 (205)
T ss_pred EEEc-CCCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-----------CCCHHHHHHHHcCCEEEEeCCCCH
Confidence 4443 35678888877765 3334556567877654432 111222111 11245443222234
Q ss_pred HHHhcccccccccccCchhHH-----HHhhcCCceecC--CccchhhhhHHHHhhh--hceeeeccC--CCCHHHHHHHH
Q 011792 359 EVLAHQAIGGFLTHSGWNSTL-----ESMVAGVPMICW--PQVGDQQVNSRCVSEI--WKIGFDMKD--TCDRSTIEKLV 427 (477)
Q Consensus 359 ~ll~~~~~~~~I~HGG~gs~~-----eal~~GvP~l~~--P~~~DQ~~na~rv~~~--~G~G~~l~~--~~~~~~l~~~v 427 (477)
..+..+++ +|..-|...+. +|-..|+|+-++ |-..|=. .-..+ ++ +-+|+.-.+ ..-+..|++.|
T Consensus 65 ~dl~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~-~pa~~-~~g~l~iaisT~G~sP~la~~lr~~i 140 (205)
T TIGR01470 65 DILEGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI-FPSIV-DRSPVVVAISSGGAAPVLARLLRERI 140 (205)
T ss_pred HHhCCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE-EeeEE-EcCCEEEEEECCCCCcHHHHHHHHHH
Confidence 45666665 88877776433 344578888433 3322311 12222 21 223333221 23346777777
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHH
Q 011792 428 RDLMDNKRDKIMESTVQIAKMARD 451 (477)
Q Consensus 428 ~~ll~~~~~~~~~~a~~l~~~~~~ 451 (477)
.+++.+....+.+.+.++...+++
T Consensus 141 e~~l~~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 141 ETLLPPSLGDLATLAATWRDAVKK 164 (205)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHh
Confidence 777763223444555555555543
No 388
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.22 E-value=1.3e+02 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=32.7
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
|.|++. ||.|-.--.+.||-+|+++|-.|+++=.+++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 556665 88899999999999999999999999876653
No 389
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=1.9e+02 Score=19.39 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011792 436 DKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 436 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 474 (477)
+.-.++.+++.+.+.+ |-|+..++.-...++++.+
T Consensus 11 eqQQ~AVE~Iq~lMae----GmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 11 EQQQKAVERIQELMAE----GMSSGEAIALVAQELRENH 45 (60)
T ss_pred HHHHHHHHHHHHHHHc----cccchhHHHHHHHHHHHHh
Confidence 3445666777666655 7777778777777777654
No 390
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=28.12 E-value=98 Score=22.77 Aligned_cols=52 Identities=10% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011792 418 CDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 474 (477)
-.++.|+++|+ +|.. . ..+.+.|.+.+....+.|.+.....++++++.+..+
T Consensus 28 s~SEvvR~aLR-lle~--~--e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~~ 79 (80)
T PF03693_consen 28 SASEVVREALR-LLEE--R--EAKLEALREALQEGLESGESEPFDMDDILARARRKH 79 (80)
T ss_dssp SHHHHHHHHHH-HHHH--H--HHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH--
T ss_pred CHHHHHHHHHH-HHHH--H--HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhhc
Confidence 34567777776 4443 2 234566777777665556555466778877765543
No 391
>PLN02929 NADH kinase
Probab=28.11 E-value=70 Score=30.34 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=40.1
Q ss_pred cccccccCchhHHHHhh---cCCceecCCccc------hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 367 GGFLTHSGWNSTLESMV---AGVPMICWPQVG------DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 367 ~~~I~HGG~gs~~eal~---~GvP~l~~P~~~------DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
+++|+-||=||++.+.+ .++|++.+-..- .+..+.-. +..-+|... ..+.+++.+++.+++++
T Consensus 66 Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL~--~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 66 DLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHLC--AATAEDFEQVLDDVLFG 137 (301)
T ss_pred CEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCccccc--cCCHHHHHHHHHHHHcC
Confidence 34999999999999855 468887774431 11222211 111244332 46789999999999984
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.05 E-value=69 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|+++++-.|-- -..||+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRV-----GRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHH-----HHHHHHHHHhCCCceEEEEcC
Confidence 35555554432 368999999999999998763
No 393
>PRK13236 nitrogenase reductase; Reviewed
Probab=27.96 E-value=1.2e+02 Score=28.75 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=30.4
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
||++-+.. ||-|-..-...||..|+++|++|.++=.+.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 56555533 777889999999999999999999995533
No 394
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.96 E-value=3.1e+02 Score=23.43 Aligned_cols=91 Identities=10% Similarity=0.166 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc-cchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHhhchhcHHHH
Q 011792 22 PMLSLAKLFSHAGFRITFVNTDQ-YHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCSNKPVSKLAF 100 (477)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (477)
-+..|.+...++|..|.++...+ ..+.+.+ +....++++.+...-+++-... ....+
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~~~~~~~~~-----~l~~~yp~l~i~g~~~g~~~~~-----------------~~~~i 91 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKPEVLEKAAE-----RLRARYPGLKIVGYHHGYFGPE-----------------EEEEI 91 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCHHHHHHHHH-----HHHHHCCCcEEEEecCCCCChh-----------------hHHHH
Confidence 35566777777899999998742 2233222 2234566777776432221100 11124
Q ss_pred HHHHhcCCCCCeEEEECCCcc----hHHHHHHHcCCCeEE
Q 011792 101 RQLLMTPGRLPTCIISDSIMS----FAIDVAEELNIPIIT 136 (477)
Q Consensus 101 ~~~l~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~v~ 136 (477)
.+.+++. +||+|++-.-.+ ++....+.++.+++.
T Consensus 92 ~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 92 IERINAS--GADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 4555554 999999999887 677777777666544
No 395
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.84 E-value=69 Score=32.17 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEc
Q 011792 98 LAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFR 138 (477)
Q Consensus 98 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 138 (477)
..+.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 4556666665 9999999984 5678999999998764
No 396
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.75 E-value=98 Score=32.08 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEc
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFR 138 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 138 (477)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 444555544 899999887 46779999999998764
No 397
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.73 E-value=96 Score=32.06 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEEcc
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITFRP 139 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 139 (477)
.+.+.+++. +||+||.+. ....+|+++|||++.+..
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 344455544 899999998 567789999999988643
No 398
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.65 E-value=4.2e+02 Score=26.95 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCCh
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYT 85 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (477)
.+|+++... -.-.+.|++.|.+-|-+|..+......+. ++ .++ ...
T Consensus 311 gkrvai~~~-----~~~~~~la~~L~elG~~v~~~~~~~~~~~----------------~~--~~~----~~~------- 356 (455)
T PRK14476 311 GKRVAIAAE-----PDLLLALGSFLAEMGAEIVAAVTTTKSPA----------------LE--DLP----AEE------- 356 (455)
T ss_pred CCEEEEEeC-----HHHHHHHHHHHHHCCCEEEEEEeCCCcHH----------------HH--hCC----cCc-------
Confidence 467776642 24677899999999999988776432111 10 010 000
Q ss_pred HHHHHhhchhcHHHHHHHHhcCCCCCeEEEECCCcchHHHHHHHcCCCeEEE
Q 011792 86 KDWFCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMSFAIDVAEELNIPIITF 137 (477)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 137 (477)
... .....+.+.++ ++|++|.+. ....+|+++|||++.+
T Consensus 357 -----i~~-~D~~~le~~~~----~~dliig~s---~~~~~a~~~gip~~~~ 395 (455)
T PRK14476 357 -----VLI-GDLEDLEELAE----GADLLITNS---HGRQAAERLGIPLLRV 395 (455)
T ss_pred -----EEe-CCHHHHHHhcc----CCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 000 01123444433 799999998 4577999999999874
No 399
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.63 E-value=69 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 14 FPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 14 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
.|+.|++- ..|+++|.++||+|+.++-..
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCc
Confidence 35556554 458999999999999999743
No 400
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.47 E-value=85 Score=31.10 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHH
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDW 88 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (477)
|++---|+.|--.=++.++..|+.+| .|.+++.++-..++.-... .+. .+..+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~--------------RL~--~~~~~---------- 148 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD--------------RLG--LPTNN---------- 148 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH--------------HhC--CCccc----------
Confidence 44555588888888999999999999 9999999776555432111 010 01100
Q ss_pred HHhhchhcHHHHHHHHhcCCCCCeEEEECCCcc------------------h---HHHHHHHcCCCeEEEccC
Q 011792 89 FCSNKPVSKLAFRQLLMTPGRLPTCIISDSIMS------------------F---AIDVAEELNIPIITFRPY 140 (477)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~------------------~---~~~~A~~lgiP~v~~~~~ 140 (477)
+..+.+...+.+.+.+++. +||++|.|.... | -+.+|+..||+.+.+-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 149 LYLLAETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred eEEehhcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 0111112233444445544 999999997432 1 135788899999887543
No 401
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.23 E-value=79 Score=30.34 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
++|.++-.|++| .+||+.|++.||+|++....
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 688999888887 58999999999999999874
No 402
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=27.12 E-value=1.1e+02 Score=26.46 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCeEEEECCCcc--hHHHHHHHcCCCeEEE
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMS--FAIDVAEELNIPIITF 137 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~ 137 (477)
.+.+.+++. ++|.|++=..-- .|..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 445555544 799998755333 6888999999999995
No 403
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.12 E-value=77 Score=30.00 Aligned_cols=54 Identities=17% Similarity=0.358 Sum_probs=37.9
Q ss_pred hcccccccccccCchhHHHHhhc----CCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 362 AHQAIGGFLTHSGWNSTLESMVA----GVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 362 ~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
..+++ +|+=||=||++.+.+. ++|++.+-. -+ +|.. .+.+++++.+++.+++++
T Consensus 63 ~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL--t~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 63 GSADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFL--ATVSKEEIEETIDELLNG 120 (292)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCcc--cccCHHHHHHHHHHHHcC
Confidence 34555 9999999999999873 678887722 11 2211 346778888888888874
No 404
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=27.01 E-value=74 Score=32.42 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=36.8
Q ss_pred cccccccccccCchhHHHHhhc----CCceecCCccchhhhhHHHHhhhhc-eeeeccCCCCHHHHHHHHHHHHhH
Q 011792 363 HQAIGGFLTHSGWNSTLESMVA----GVPMICWPQVGDQQVNSRCVSEIWK-IGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 363 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.+++ +|+=||=||++.+.+. ++|++.+ | .| +|.. -.++.+++.+++.+++++
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N-------~G~LGFL--t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------S-------MGSLGFM--TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------e-------CCCccee--cccCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 4676655 2 12 3332 346788899999998874
No 405
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.89 E-value=1.1e+02 Score=27.85 Aligned_cols=37 Identities=11% Similarity=-0.046 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.++|+++.--..-=..-+-.....|+++||+|++++-
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 5677666554444446677778888999999999985
No 406
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=26.80 E-value=1.1e+02 Score=29.98 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhccc
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAHQA 365 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~ 365 (477)
+.|-|.-..||+. ..|++-+...+.-+++.+++. .+-.+... -+.-++| |-.
T Consensus 193 DhP~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGG---------GLiaGIat----~vk~~~p--------~vk 244 (457)
T KOG1250|consen 193 DHPDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGG---------GLIAGIAT----GVKRVGP--------HVK 244 (457)
T ss_pred CCchhhcCcchHH-------HHHHHhhcCCCCeEEEecCCc---------hhHHHHHH----HHHHhCC--------CCc
Confidence 4456777777775 556666655544566667543 33333221 1111222 333
Q ss_pred ccccccccCchhHHHHhhcCCceec--CCccchh------hhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 366 IGGFLTHSGWNSTLESMVAGVPMIC--WPQVGDQ------QVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 366 ~~~~I~HGG~gs~~eal~~GvP~l~--~P~~~DQ------~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
+=+|-|+ |..++..|+.+|.|+-. ++.++|- -.|+.++++.+-..+. ..+.++|..+|.+++.|
T Consensus 245 IIGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv---vV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 245 IIGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV---VVEDDEIAAAILRLFED 316 (457)
T ss_pred eEEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE---EeccHHHHHHHHHHHHh
Confidence 3346666 78899999999998732 1122231 2244444443333333 36789999999999997
No 407
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=26.80 E-value=1.1e+02 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=28.6
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|++.+. ||-|-..-...||..|+++|++|.++=.+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 334444 78899999999999999999999998653
No 408
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=26.54 E-value=2.9e+02 Score=23.42 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=34.3
Q ss_pred hceeeecc--CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 408 WKIGFDMK--DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 408 ~G~G~~l~--~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
+++-+... +.|+++.|++.|-.+-.= =..|++...+...+ ++ ...+++.|++++..
T Consensus 88 l~V~L~f~sm~DF~Pd~Ia~qVp~L~~L--lelR~~L~~L~~~l------~~--~~~~~~~l~~~l~d 145 (159)
T TIGR03358 88 LPVDLKFESMDDFSPDAVAKQVPELKKL--LEAREALRDLKGPL------DN--NPDLRKLLQELLKD 145 (159)
T ss_pred eEEEeccCccccCCHHHHHHHhHHHHHH--HHHHHHHHHHHhhc------cC--cHHHHHHHHHHHCC
Confidence 34444444 589999999988777221 23355555555444 44 35678888887754
No 409
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=26.49 E-value=95 Score=27.07 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|||.++ |.||+- +.+|-.|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 567776 445553 77888999999999998653
No 410
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=26.46 E-value=1.3e+02 Score=25.68 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=32.1
Q ss_pred cHHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEEEcc
Q 011792 96 SKLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 96 ~~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~~~~ 139 (477)
....+.+++++. +||+|+...... .+..+|.+||.|++.-..
T Consensus 71 ~a~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 71 YAPALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 344566666654 799999998776 578899999999988533
No 411
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=26.34 E-value=2e+02 Score=28.77 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEe
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA-GFRITFVN 41 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~ 41 (477)
|||+++-.++..| +|++.|.+. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 6899999887776 599999886 44444443
No 412
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.31 E-value=77 Score=31.41 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
.+||++.-.|+ +...-...+.+.|.+.|++|.++.++.-.+.+
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 46888877776 45566899999999999999999986644444
No 413
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=26.22 E-value=1.1e+02 Score=30.66 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=30.4
Q ss_pred CEEE-EEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 7 PHVV-LLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 7 ~~il-~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
++|+ |... ||-|-..-.+.||..|+.+|++|.++=.+.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 4554 4444 888999999999999999999999985433
No 414
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=26.06 E-value=74 Score=25.29 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 20 IKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 20 v~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+.|++.+.-.+.-|||++|++.|.-+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 456677777777899999999996554443
No 415
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.94 E-value=77 Score=30.20 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
+|||.|+-.|..| .++|+.|.+.||+|++...
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 5899998666544 5789999999999998865
No 416
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=25.92 E-value=3.6e+02 Score=22.83 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=36.6
Q ss_pred hceeeecc--CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011792 408 WKIGFDMK--DTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMA 474 (477)
Q Consensus 408 ~G~G~~l~--~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 474 (477)
+++-+... ++|+++.|.+.|-.+-.= -..|++...+...+ ++ ...+++.|++++.+.
T Consensus 87 l~V~L~f~sm~DF~Pd~v~~qVp~L~~L--lelR~~L~~L~~~l------~~--~~~~r~~l~~~l~~~ 145 (157)
T PF05591_consen 87 LSVDLKFESMDDFHPDAVAEQVPELRKL--LELREQLRDLKGPL------DN--NPAFRKLLQEILSDP 145 (157)
T ss_pred ceeEEeeCccccCCHHHHHHhhHHHHHH--HHHHHHHHHHHHHh------hc--hHHHHHHHHHHHCCH
Confidence 44445554 599999999998866221 34455555555555 44 457788888877653
No 417
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=25.65 E-value=56 Score=31.07 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred HHhcccccccccccCchhHHHHhh----cCCceecCCccchhh
Q 011792 360 VLAHQAIGGFLTHSGWNSTLESMV----AGVPMICWPQVGDQQ 398 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~ 398 (477)
.|..-+++++|.=||.||..-|.. +++|++.+|-..|-.
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDND 128 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDND 128 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCC
Confidence 466668889999999999977753 799999999876643
No 418
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.38 E-value=1.2e+02 Score=27.10 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=23.3
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFV 40 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~ 40 (477)
|+.++..++++++..+.|-+- -+||+++.+.|++|.-.
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG--~ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIG--YALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccCCCeEEEeecCCcchh--HHHHHHHHhCCeEEEEE
Confidence 454443445555444333332 27899999999998654
No 419
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.32 E-value=63 Score=23.80 Aligned_cols=22 Identities=9% Similarity=0.366 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 011792 23 MLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+..+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678999999999999887644
No 420
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=25.20 E-value=79 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|||+|+-.|.-| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689998776655 56788999999999999864
No 421
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=25.20 E-value=1.2e+02 Score=29.26 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 12 LPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 12 ~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
++.||.|-.--...|++.|.++|++|.+++-
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 6789999999999999999999999999976
No 422
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=25.11 E-value=1.2e+02 Score=31.35 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 20 IKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 20 v~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
+.+.-.+++.|..+|++|.+++..+..+.+.+
T Consensus 40 ~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRK 71 (515)
T TIGR00467 40 VITADAIARALRDSGSEARFIYIADNYDPLRK 71 (515)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEEEcCCccccc
Confidence 36777899999999999999999887777766
No 423
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.06 E-value=5.3e+02 Score=23.47 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCeEEEECCCcch----HHHHHHHcCCCeEEEcc
Q 011792 110 LPTCIISDSIMSF----AIDVAEELNIPIITFRP 139 (477)
Q Consensus 110 ~~D~vI~D~~~~~----~~~~A~~lgiP~v~~~~ 139 (477)
++|.||....... ....+...|||+|.+..
T Consensus 55 ~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 55 GVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred CCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 8999998654432 23455678999999743
No 424
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.95 E-value=83 Score=29.99 Aligned_cols=53 Identities=11% Similarity=0.291 Sum_probs=37.1
Q ss_pred cccccccccccCchhHHHHhhc----CCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 363 HQAIGGFLTHSGWNSTLESMVA----GVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 363 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.+++ +|+=||=||++.+.+. ++|++.+-. - .+|.. -+.+.+++.+++.+++++
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFL--t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFL--TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCccc--ccCCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 778887722 0 11211 245678888888888874
No 425
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=24.72 E-value=1.1e+02 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 16 AYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 16 ~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+.|++- ..||+.|+..||+|++.+..
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCC
Confidence 444443 57899999999999999763
No 426
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=24.72 E-value=1.4e+02 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.331 Sum_probs=31.1
Q ss_pred EEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 8 HVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 8 ~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+|.+++. |+-|-..-.-.|+-.|+.+|+.|.++-.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 5777776 57799999999999999999999999764
No 427
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=3e+02 Score=23.42 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=58.4
Q ss_pred CHHHHHh-cccccccccccC---chhHHHHhhcCCceecCCc--cchhhhhHHHHhhhhceeeecc-CCCCHHHHHHHHH
Q 011792 356 PQEEVLA-HQAIGGFLTHSG---WNSTLESMVAGVPMICWPQ--VGDQQVNSRCVSEIWKIGFDMK-DTCDRSTIEKLVR 428 (477)
Q Consensus 356 p~~~ll~-~~~~~~~I~HGG---~gs~~eal~~GvP~l~~P~--~~DQ~~na~rv~~~~G~G~~l~-~~~~~~~l~~~v~ 428 (477)
+|..|+. ||++.+-+--.| .-|+.|.-.+|.=.+. |. ..=+..|++.. +++|.=..+- +..|.++|.++..
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aVkg~~k~~Il~a~~ 141 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAVKGNTKDTILAAFE 141 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEeecCCCHHHHHHHHH
Confidence 5555443 777622222222 3477777777765542 21 11256789888 5588877776 7788999888887
Q ss_pred HHHh-HhHHHHHHHHHHHHHHHH
Q 011792 429 DLMD-NKRDKIMESTVQIAKMAR 450 (477)
Q Consensus 429 ~ll~-~~~~~~~~~a~~l~~~~~ 450 (477)
+=|. ++..+++..+.++.+..+
T Consensus 142 ~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 142 RRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHhcccHHHHHHHHHHHHHHHHH
Confidence 7776 444667777777766654
No 428
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=24.42 E-value=1.2e+02 Score=30.12 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCEEEEEc-C-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 6 VPHVVLLP-F-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 6 ~~~il~~~-~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
+++|+.+. . ||-|-..-...||..|+.+|++|.++=.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 45555444 3 788999999999999999999999985543
No 429
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.33 E-value=1e+02 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+|.|+-.|.-| .++|+.|.++||+|+++.-.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 57777665544 68999999999999998753
No 430
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.33 E-value=1.1e+02 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=25.8
Q ss_pred CcEEEEEecCccc-CCHHHHHHHHHHHHhC--CCcEEEEEecC
Q 011792 287 RSVLYVSFGSFIK-LSGDQILEFWHGIVNS--GKGFLWVIRSD 326 (477)
Q Consensus 287 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~ 326 (477)
|.++++||||... .....+..+.+.++.. +..+-|..++.
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 3589999999876 4455788888888773 67888888543
No 431
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=46 Score=31.19 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred cCchhH--HHHhhcCCceecCCccchhhhhHHHHhhhhcee
Q 011792 373 SGWNST--LESMVAGVPMICWPQVGDQQVNSRCVSEIWKIG 411 (477)
Q Consensus 373 GG~gs~--~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G 411 (477)
||||++ ..|-.+|+-++.+-+...|..++..-.++.|+.
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 377654 556777999999999999999996633557888
No 432
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=24.19 E-value=1.6e+02 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=21.7
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEE
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITF 137 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~ 137 (477)
++|+|++-..-. .|..+|..+|+|++.+
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 799998643322 6778899999999986
No 433
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=24.11 E-value=1.8e+02 Score=26.31 Aligned_cols=84 Identities=20% Similarity=0.101 Sum_probs=52.1
Q ss_pred ccccCCCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHH
Q 011792 279 TWLGSQPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQE 358 (477)
Q Consensus 279 ~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~ 358 (477)
+.|....+| ||..|....+|+++..+.+.+ |.+.|+..-... ..+.+ +
T Consensus 91 ~ll~aGADK----VSINsaAv~~p~lI~~~a~~F---GsQciVvaIDak--------r~~~g------~----------- 138 (256)
T COG0107 91 KLLRAGADK----VSINSAAVKDPELITEAADRF---GSQCIVVAIDAK--------RVPDG------E----------- 138 (256)
T ss_pred HHHHcCCCe----eeeChhHhcChHHHHHHHHHh---CCceEEEEEEee--------eccCC------C-----------
Confidence 455545555 688888888888888777755 877765542110 00000 0
Q ss_pred HHHhcccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeecc
Q 011792 359 EVLAHQAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK 415 (477)
Q Consensus 359 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 415 (477)
.+.- -+-+|||-- +...|--+||..++ ++|+|.-+-
T Consensus 139 ----~~~~-~v~~~gGr~---------------~t~~d~~~Wa~~~e-~~GAGEIlL 174 (256)
T COG0107 139 ----NGWY-EVFTHGGRE---------------DTGLDAVEWAKEVE-ELGAGEILL 174 (256)
T ss_pred ----CCcE-EEEecCCCc---------------CCCcCHHHHHHHHH-HcCCceEEE
Confidence 0111 167788762 35668889999995 589998874
No 434
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.10 E-value=45 Score=31.02 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=34.2
Q ss_pred cccccccCchhHHHHhh------cCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHh
Q 011792 367 GGFLTHSGWNSTLESMV------AGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 367 ~~~I~HGG~gs~~eal~------~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~ 432 (477)
+++|+-||=||++.+++ .++|++.+-. - .+|.. .+.+.+++.+.+.++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL--~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY--TDWRPFEVDKLVIALAK 92 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec--ccCCHHHHHHHHHHHHc
Confidence 34999999999999986 4788887732 0 12211 23566777777777776
No 435
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.87 E-value=5.1e+02 Score=25.78 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=34.2
Q ss_pred HhhcCCceecCCccch-------hhhhHHHHhhhhceeeecc-------------CCCCHHHHHHHHHHHHh
Q 011792 381 SMVAGVPMICWPQVGD-------QQVNSRCVSEIWKIGFDMK-------------DTCDRSTIEKLVRDLMD 432 (477)
Q Consensus 381 al~~GvP~l~~P~~~D-------Q~~na~rv~~~~G~G~~l~-------------~~~~~~~l~~~v~~ll~ 432 (477)
++.+++|++++|-... -..|-.++.+ .|+-+.-. +-.+.++|...+.+.+.
T Consensus 112 ~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 112 LLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred HHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCCCccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 3667999999995432 2346667744 67665443 23567889888888775
No 436
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=23.75 E-value=1.2e+02 Score=22.80 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeC
Q 011792 20 IKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 20 v~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
+..+.+||..|.+||+..+|++-
T Consensus 16 Vm~LqALa~~Le~rG~~AsCYtC 38 (105)
T PF08844_consen 16 VMSLQALAIVLERRGYLASCYTC 38 (105)
T ss_pred HHHHHHHHHHHHhCCceeEEEec
Confidence 35678999999999999999986
No 437
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.74 E-value=1.4e+02 Score=28.23 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCC-CCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPFPAY-GHIK---PMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~~~~-GHv~---p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+++|++++.+.. =|-. ....+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 579998885543 2333 5688999999999999998653
No 438
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=23.63 E-value=1.9e+02 Score=24.60 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHhCC
Q 011792 286 SRSVLYVSFGSFIKLSGDQILEFWHGIVNSG 316 (477)
Q Consensus 286 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 316 (477)
.+..||+++||-...+...++..+..+...+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 4457999999998767777777778787743
No 439
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.59 E-value=6.6e+02 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCCeEEEECCCcc----hHHHHHHHcCCCeEEEcc
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMS----FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~v~~~~ 139 (477)
.+..++.. ++|.||...... ....-|...|||+|.+..
T Consensus 72 ~i~~li~~---~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 72 LINNFVNQ---GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred HHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 34555553 899999976553 344567788999999754
No 440
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.57 E-value=1.2e+02 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
.++|+|+-.|..|. .+|+.|+++||.|.++..+...+.+..
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 36788888777775 479999999999999988776655544
No 441
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.55 E-value=2.4e+02 Score=24.45 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=45.8
Q ss_pred cCCccchhhhhHHHHhhhhceeeecc-------------CCCCHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011792 390 CWPQVGDQQVNSRCVSEIWKIGFDMK-------------DTCDRSTIE----KLVRDLMDNKRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 390 ~~P~~~DQ~~na~rv~~~~G~G~~l~-------------~~~~~~~l~----~~v~~ll~~~~~~~~~~a~~l~~~~~~~ 452 (477)
..|..-||.......-+...+|+... ..++.+.|+ +.|.+++.| +.+-+|=+++.+.+.||
T Consensus 21 G~p~~dd~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d--~~IIRnr~KI~Avi~NA 98 (179)
T TIGR00624 21 GVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQD--DGIIRNRGKIEATIANA 98 (179)
T ss_pred CCcCcCCHHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC--ccchhhHHHHHHHHHHH
Confidence 56778888888766657788888873 157777774 678888888 78877777787777765
No 442
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=23.40 E-value=1.6e+02 Score=30.95 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccC-HHH---------HHhcccccccccc
Q 011792 303 DQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAP-QEE---------VLAHQAIGGFLTH 372 (477)
Q Consensus 303 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~---------ll~~~~~~~~I~H 372 (477)
..-+.+++.|++.|.+.|+.+.+.... .+-..+.+ .++++++.-.. +.. +-.++. ++++|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~------~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~g--v~~~t 83 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAIL------PLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPA--VCMAC 83 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCe--EEEEC
Confidence 456778889999999988888653111 22222211 12344332111 111 112233 37877
Q ss_pred cCch------hHHHHhhcCCceecCC
Q 011792 373 SGWN------STLESMVAGVPMICWP 392 (477)
Q Consensus 373 GG~g------s~~eal~~GvP~l~~P 392 (477)
.|-| .+++|...++|+|++.
T Consensus 84 ~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 84 SGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 7744 7899999999999884
No 443
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=23.34 E-value=3.5e+02 Score=26.31 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred eccCHHHHHhccccccccc------ccCchhHHHHhhcCCceec-CCccchhhhhHHHHhhhhceeeeccCCCCHHHHHH
Q 011792 353 SWAPQEEVLAHQAIGGFLT------HSGWNSTLESMVAGVPMIC-WPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEK 425 (477)
Q Consensus 353 ~~~p~~~ll~~~~~~~~I~------HGG~gs~~eal~~GvP~l~-~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~ 425 (477)
.|....+++...++.+|.+ +-+.--+.+||.+|+.+++ -|+..++-.-..+++++.|+=+.+ ..+.+ -..
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v-~~f~p--~~~ 128 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV-NTFYP--HLP 128 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE-EecCH--HHH
Confidence 5667888888788766664 2334677889999999876 567655555555555554554444 22222 234
Q ss_pred HHHHHHhH
Q 011792 426 LVRDLMDN 433 (477)
Q Consensus 426 ~v~~ll~~ 433 (477)
++++++++
T Consensus 129 ~vr~~i~~ 136 (343)
T TIGR01761 129 AVRRFIEY 136 (343)
T ss_pred HHHHHHHc
Confidence 45555543
No 444
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=23.30 E-value=1.3e+02 Score=29.37 Aligned_cols=102 Identities=17% Similarity=0.027 Sum_probs=50.0
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCCCCCCCCCCCCCChHHHHHh
Q 011792 12 LPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPDGLPPDNPRFGIYTKDWFCS 91 (477)
Q Consensus 12 ~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (477)
+..|+-|...-...+++...++|+.|.++..++..+. .. .. .+.+..-| ... ..++.. -.
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd----~~----v~---~v~~~GsP----~v~---~E~lp~-g~- 75 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPDD----DL----VV---PVGMMGSP----TVS---VEKLPS-GD- 75 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SS----E-----EE---EEEEEE-H----HHT---T-SS-H-HH-
T ss_pred EEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCC----Cc----Ee---EEEEeCCC----hHH---hccCCC-ch-
Confidence 3456778888889999999999999999988554211 00 00 01222211 100 000100 00
Q ss_pred hchhcHHHHHHHHhcCCCCCeEEEECCCcc----hHHHHHHHcCCCeEE
Q 011792 92 NKPVSKLAFRQLLMTPGRLPTCIISDSIMS----FAIDVAEELNIPIIT 136 (477)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~----~~~~~A~~lgiP~v~ 136 (477)
.....++.+.+....++|.|++-..-- .+..+|..+|+|+|=
T Consensus 76 ---e~~~a~~~le~~~g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 76 ---EALRAVEALEKYLGRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp ---HHHHHHHHHHHHTT--EEEEE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred ---HHHHHHHHHHHhhCCCccEEeehhcCccchhHHHHHHHHhCCCEEc
Confidence 122333444444555899999966543 567789999999874
No 445
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=23.30 E-value=5.1e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHA 33 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~r 33 (477)
.+++++- |+-||.-=|+.|-+.|.++
T Consensus 39 ~~~lVvl-GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVVL-GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEEE-cCCCcHHHHHHHHHHHHhh
Confidence 4555554 5559999999999999776
No 446
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=23.21 E-value=83 Score=26.61 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEEEcc
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIITFRP 139 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~~~~ 139 (477)
...+.+++++. +||+|+...... .+..+|.++|.|++.-..
T Consensus 79 a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 34556666654 899999998666 577899999999998544
No 447
>PLN00016 RNA-binding protein; Provisional
Probab=23.20 E-value=1e+02 Score=30.28 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 6 VPHVVLLPF--PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 6 ~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
+++|+++.. |+.|.+- ..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 367777611 3334443 56789999999999998863
No 448
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.12 E-value=96 Score=29.35 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=36.6
Q ss_pred cccccccccccCchhHHHHhh----cCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 363 HQAIGGFLTHSGWNSTLESMV----AGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 363 ~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.+++ +|+=||=||++.+++ +++|++.+-. - . +|.. ..++++++.+++.+++++
T Consensus 63 ~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G---~---lGFl--~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QADL--AIVVGGDGNMLGAARVLARYDIKVIGINR--------G---N---LGFL--TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C---C---CCcc--cccCHHHHHHHHHHHHcC
Confidence 4555 999999999999975 3677776622 0 1 1221 245678888899988873
No 449
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=23.06 E-value=1.3e+02 Score=21.89 Aligned_cols=28 Identities=29% Similarity=0.221 Sum_probs=20.1
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEE
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITF 137 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~ 137 (477)
+.-.||++.-.. -+..+|+.+|||++.-
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 556677766554 5678999999999884
No 450
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=23.04 E-value=1.1e+02 Score=30.55 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|+|.|+-.|--| +++|..|+++||+|+++-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 467777555444 6889999999999999865
No 451
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=1.4e+02 Score=25.12 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCCCeEEEECCCcc----------hHHHHHHHcCCCeEEEccCchhh
Q 011792 108 GRLPTCIISDSIMS----------FAIDVAEELNIPIITFRPYSAYC 144 (477)
Q Consensus 108 ~~~~D~vI~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~~ 144 (477)
+..||+|++..-.- -+..+|+++|||++-.+.+....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 34899999976442 46789999999998876655543
No 452
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=22.93 E-value=5.7e+02 Score=26.92 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.2
Q ss_pred cccccccCc------hhHHHHhhcCCceecCC
Q 011792 367 GGFLTHSGW------NSTLESMVAGVPMICWP 392 (477)
Q Consensus 367 ~~~I~HGG~------gs~~eal~~GvP~l~~P 392 (477)
.++++|.|- +.+++|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 348888774 47899999999999884
No 453
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.92 E-value=66 Score=30.83 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHhcccccccccccCchhHHHHhh---cCCceecCCccch
Q 011792 360 VLAHQAIGGFLTHSGWNSTLESMV---AGVPMICWPQVGD 396 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~D 396 (477)
-|..-+++.+|.=||.||..-|.. +|+|+|.+|-..|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 466678889999999999988755 5999999998665
No 454
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.90 E-value=1.4e+02 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
.+||+++-.|..| +++++.|.++|++|++.-....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 5899999999888 8999999999999999875443
No 455
>PHA02518 ParA-like protein; Provisional
Probab=22.88 E-value=1.7e+02 Score=25.62 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
|.|... ||-|-..-...||..|+++|++|.++=.+.
T Consensus 3 i~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 555555 788999999999999999999999997654
No 456
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=22.59 E-value=77 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEEccCch
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITFRPYSA 142 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 142 (477)
.||+||+..... -|..=|.++|||+|.+.-+-.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 788777654444 678889999999999865544
No 457
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=22.48 E-value=1.6e+02 Score=26.95 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEE
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITF 137 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~ 137 (477)
++|+|++-..-. .|..+|..+|+|++..
T Consensus 111 ~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 111 RVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 799998754433 6788999999998874
No 458
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.38 E-value=2.4e+02 Score=22.11 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCcee-------eccCHHHHHhcc-ccccccc
Q 011792 300 LSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIV-------SWAPQEEVLAHQ-AIGGFLT 371 (477)
Q Consensus 300 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-------~~~p~~~ll~~~-~~~~~I~ 371 (477)
.+......+++++++.|.+.|.....+.. ....+ +..+.+... .|+....|+.-+ .-++...
T Consensus 9 nrGeia~r~~ra~r~~Gi~tv~v~s~~d~--------~s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i 78 (110)
T PF00289_consen 9 NRGEIAVRIIRALRELGIETVAVNSNPDT--------VSTHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAI 78 (110)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEEEEGGGT--------TGHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEE
T ss_pred CCCHHHHHHHHHHHHhCCcceeccCchhc--------ccccc--cccccceecCcchhhhhhccHHHHhhHhhhhcCccc
Confidence 34455778999999999999888865421 11111 133444443 366666655432 1144889
Q ss_pred ccCchhHHHHh
Q 011792 372 HSGWNSTLESM 382 (477)
Q Consensus 372 HGG~gs~~eal 382 (477)
|+|+|-..|..
T Consensus 79 ~pGyg~lse~~ 89 (110)
T PF00289_consen 79 HPGYGFLSENA 89 (110)
T ss_dssp ESTSSTTTTHH
T ss_pred ccccchhHHHH
Confidence 99998777653
No 459
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.30 E-value=1.8e+02 Score=25.99 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 1 MEQTRVPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
|...+.++|++ + |+.|++ -..|++.|.++||+|++++.
T Consensus 1 ~~~~~~~~vlI-t-Gasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 1 MGSLMGRVALV-T-GAARGL--GRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCCCEEEE-e-CCCchH--HHHHHHHHHHCCCeEEEEeC
Confidence 44332345554 3 344554 36788999999999977655
No 460
>CHL00067 rps2 ribosomal protein S2
Probab=22.22 E-value=85 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCeEEEECCCcc--hHHHHHHHcCCCeEEEccCchh
Q 011792 109 RLPTCIISDSIMS--FAIDVAEELNIPIITFRPYSAY 143 (477)
Q Consensus 109 ~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 143 (477)
..||+||.-.... .+..=|..+|||+|.+.-+..-
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4799888765554 6888899999999998665443
No 461
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.17 E-value=1e+02 Score=29.42 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=37.5
Q ss_pred cccccccccccCchhHHHHhhc----CCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH
Q 011792 363 HQAIGGFLTHSGWNSTLESMVA----GVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN 433 (477)
Q Consensus 363 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~ 433 (477)
.+++ +|+=||=||++.+.+. ++|++.+.. . .+|.. -+.+.+++.+++.+++++
T Consensus 72 ~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~-----------G---~lGFL--~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCEL--VLVLGGDGTILRAAELARAADVPVLGVNL-----------G---HVGFL--AEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec-----------C---CCcee--ccCCHHHHHHHHHHHHcC
Confidence 4555 9999999999998764 788888743 1 12222 235678888888888873
No 462
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=21.96 E-value=1.8e+02 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEEc
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITFR 138 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~ 138 (477)
++|+|++-..-- .|..+|..+|+|++.+-
T Consensus 128 ~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 128 EIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 799998754333 67889999999998863
No 463
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=21.84 E-value=1.5e+02 Score=27.93 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=22.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEEec
Q 011792 298 IKLSGDQILEFWHGIVNSGKGFLWVIRS 325 (477)
Q Consensus 298 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 325 (477)
...+....+.+.+|+.....+.||..++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rG 71 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARG 71 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 3455666788999999999999999975
No 464
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=21.77 E-value=5.2e+02 Score=27.72 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=23.4
Q ss_pred HHHHHhcCCCCCeEEEECCCcc-hHHHHHHHcCCCeEEEccC
Q 011792 100 FRQLLMTPGRLPTCIISDSIMS-FAIDVAEELNIPIITFRPY 140 (477)
Q Consensus 100 l~~~l~~~~~~~D~vI~D~~~~-~~~~~A~~lgiP~v~~~~~ 140 (477)
+.+.+++. +||++|+-.+.. -...+-......++-++++
T Consensus 67 ~~~~l~~~--~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 67 WVERIREL--APDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHhc--CCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 34455555 899998866433 3334444455567777665
No 465
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=21.77 E-value=1.3e+02 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.408 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
.++|+|+-.|+.| +.++|+.|.++|++|+..=
T Consensus 7 ~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 7 IKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred CCEEEEEEEchhh----HHHHHHHHHhCCCeEEEEC
Confidence 4689999999866 5558999999999998753
No 466
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.68 E-value=5.6e+02 Score=22.60 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred hhHHHHhhcCCceecCCccchhhh-hHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHH
Q 011792 376 NSTLESMVAGVPMICWPQVGDQQV-NSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDN--KRDKIMESTVQIAKMARDA 452 (477)
Q Consensus 376 gs~~eal~~GvP~l~~P~~~DQ~~-na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~--~~~~~~~~a~~l~~~~~~~ 452 (477)
+++.++++-++-.+..|+..=++. ....| - |+= -.-+..-+++++.| +-+++++.+++++++++++
T Consensus 23 ~~~~~~i~~~ln~~f~P~i~~~~p~lvilV-~--avi--------~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA 91 (201)
T COG1422 23 SSIRDGIGGALNVVFGPLLSPLPPHLVILV-A--AVI--------TGLYITILQKLLIDQEKMKELQKMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHH-H--HHH--------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777776677776544333 33332 1 211 11233444455442 2356889999999999998
Q ss_pred HHcCCChHHHHHHHHHHHHH
Q 011792 453 VKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 453 ~~~gg~~~~~~~~~i~~~~~ 472 (477)
-++|. ...++++=++-.+
T Consensus 92 ~~~~d--~~~lkkLq~~qme 109 (201)
T COG1422 92 QESGD--MKKLKKLQEKQME 109 (201)
T ss_pred HHhCC--HHHHHHHHHHHHH
Confidence 77666 5566666555433
No 467
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.67 E-value=1.8e+02 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCC-CHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYG-HIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~G-Hv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
-|+++++.++.| -+ =.++|+.|+++|++|.+...
T Consensus 10 ~k~~lItGas~g~GI--G~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 10 GKRGLVVGIANEQSI--AWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCEEEEECCCCCCcH--HHHHHHHHHHcCCEEEEEeC
Confidence 378888887642 22 27899999999999988654
No 468
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.38 E-value=2.3e+02 Score=21.49 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=25.0
Q ss_pred CCeEEEECCCcc------hHHHHHHHcCCCeEEEccCchhhH
Q 011792 110 LPTCIISDSIMS------FAIDVAEELNIPIITFRPYSAYCS 145 (477)
Q Consensus 110 ~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~ 145 (477)
++|+||+=.-+. .+...|+..|+|+++........+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 778886543333 456789999999999875555443
No 469
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=21.38 E-value=1.7e+02 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=28.4
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 9 VVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 9 il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
|+|+.. ||-|=..-...||..|+++|++|.++=.+
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455544 77788888999999999999999998543
No 470
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=21.36 E-value=1.5e+02 Score=24.39 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=27.4
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccc
Q 011792 9 VVLLP-FPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYH 46 (477)
Q Consensus 9 il~~~-~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (477)
|.|++ .++.|=..-.+.||..|+++|++|.++-.....
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 34444 577788889999999999999998888765443
No 471
>smart00096 UTG Uteroglobin.
Probab=21.31 E-value=2.2e+02 Score=20.34 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q 011792 418 CDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLM 473 (477)
Q Consensus 418 ~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 473 (477)
-|.++-...+..--.| +++.+++.+++.-.-.. -++. ...+..++++|..|
T Consensus 16 gt~~~Y~~~l~~y~~~--~~~~ea~~~lK~cvD~L-~~~~--k~~i~~ll~kI~~s 66 (69)
T smart00096 16 GTPSSYEASLKQFKPD--PDMLEAGRQLKKLVDTL-PQET--RENILKLTEKIYTS 66 (69)
T ss_pred CCHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcC-CHHH--HHHHHHHHHHHHcC
Confidence 3566677777777667 88888888887776543 2222 45578888888765
No 472
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.31 E-value=1.3e+02 Score=24.40 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
+|++.+..+.+|-.----++..|...|++|+.+....-.+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 478889999999999999999999999999998764433333
No 473
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.26 E-value=1.7e+02 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSH-AGFRITFVNTD 43 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 43 (477)
|++-.+-=+|++--+-.||+.|++ +||+|++...+
T Consensus 3 IFC~VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 3 IFCRVVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred eEEEeecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 445555678999999999999997 69999999874
No 474
>PRK09213 pur operon repressor; Provisional
Probab=21.21 E-value=1.9e+02 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCeEEEECCCcc--hHHHHHHHcCCCeEEEc
Q 011792 110 LPTCIISDSIMS--FAIDVAEELNIPIITFR 138 (477)
Q Consensus 110 ~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~ 138 (477)
++|+|++=..-- .|..+|..+|+|++.+-
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 799998754333 67889999999998863
No 475
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.20 E-value=1.6e+02 Score=29.27 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=29.4
Q ss_pred CEE-EEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 011792 7 PHV-VLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 7 ~~i-l~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
++| .|+.. ||-|-..-...||..|+.+|++|.++=
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 455 45555 888999999999999999999999985
No 476
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=21.14 E-value=1.8e+02 Score=25.64 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCCCHHHHHH-HHHHHHh-CCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLS-LAKLFSH-AGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~-La~~L~~-rGH~Vt~~~~ 42 (477)
|+|+++-...+||..-+.. +++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 4788888888999988766 5666666 8999988864
No 477
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=21.13 E-value=2e+02 Score=28.00 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEEEEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHhc-
Q 011792 285 PSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFLWVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLAH- 363 (477)
Q Consensus 285 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~- 363 (477)
+++.+||++-|--+ ..+.....+.++.+.--.+|-+...-. ..|+ ....||..
T Consensus 135 Pdk~VVF~avGFET-TaP~~A~~i~~a~~~~~~Nfsvl~~hk---------l~PP----------------a~~~ll~~~ 188 (369)
T TIGR00075 135 PDRKVVFFAIGFET-TAPTTASTLLSAKAEDINNFFFLSAHR---------LVPP----------------AVEALLENP 188 (369)
T ss_pred CCCeEEEEecCchh-ccHHHHHHHHHHHHcCCCcEEEEEecc---------ccHH----------------HHHHHHcCC
Q ss_pred -ccccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHH
Q 011792 364 -QAIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMEST 442 (477)
Q Consensus 364 -~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a 442 (477)
..+++||.=|=-.++.-+-.+ ..++++.|+-..+ ..|.+.+|..+|..++ ..+.++-
T Consensus 189 ~~~idgfi~PGHVs~I~G~~~y-----------------~~l~~~y~~P~VV-aGFEp~DiL~~i~~ll----~qi~~g~ 246 (369)
T TIGR00075 189 AVQIDAFLAPGHVSTIIGAKPY-----------------APIAEKYKIPIVI-AGFEPVDILQAIYMLL----KQAISGE 246 (369)
T ss_pred CCCccEEEecCEEEEEeccchh-----------------HHHHHHcCCCeEE-eccCHHHHHHHHHHHH----HHHHCCC
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 011792 443 VQIAKMARDAVKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 443 ~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 472 (477)
.++--....++++.| ...+.++|+++.+
T Consensus 247 ~~v~N~Y~R~V~~eG--N~~Aq~~i~~vFe 274 (369)
T TIGR00075 247 AKVENQYKRAVKPEG--NVKAQKAIDEVFE 274 (369)
T ss_pred ceEEEeeceeeCCcc--CHHHHHHHHHHcc
No 478
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.12 E-value=1e+02 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhc
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRL 49 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l 49 (477)
..+++.-.+|.|-..=+.++|.+|.++|..|+|+..+.+...+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 4577777788899999999999999999999999876554333
No 479
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=21.12 E-value=1.5e+02 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCCeEE
Q 011792 21 KPMLSLAKLFSHAGFRIT 38 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt 38 (477)
.-+-..++.|.++||+|.
T Consensus 16 ~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred HHHHHHHHHHHHCCCEEe
Confidence 347889999999998876
No 480
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.96 E-value=1.9e+02 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
-|+++++.++.|. ---.++|+.|+++|++|++..
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 4788899887631 023578899999999998764
No 481
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=20.95 E-value=79 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHhcccccccccccCchhHHHHhh---cCCceecCCccch
Q 011792 360 VLAHQAIGGFLTHSGWNSTLESMV---AGVPMICWPQVGD 396 (477)
Q Consensus 360 ll~~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~D 396 (477)
-|..-+++.+|.=||.||...|.. .|+|+|.+|-..|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 455567888999999999987755 5999999998655
No 482
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=20.90 E-value=1.6e+02 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=31.3
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 011792 8 HVVLLPF-PAYGHIKPMLSLAKLFSHAGFRITFVNTDQY 45 (477)
Q Consensus 8 ~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (477)
.|.|... ||-|-..-.+.||..|+++|.+|.++=.+..
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3555555 8889999999999999999999999876543
No 483
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=20.90 E-value=1.7e+02 Score=26.35 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.6
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 011792 7 PHVVLLPFP-AYGHIKPMLSLAKLFSHAGFRITFVNTD 43 (477)
Q Consensus 7 ~~il~~~~~-~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 43 (477)
.-|+|++-+ -.+...+.....+.|.++|++|.+++|.
T Consensus 151 t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 151 TTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 457888887 5699999999999999999999999985
No 484
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=20.86 E-value=2.6e+02 Score=21.33 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred hhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q 011792 396 DQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMAF 475 (477)
Q Consensus 396 DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~ 475 (477)
|+-.|.... +..|.+.+. .+++.++.++..+++.-. ..-.+.+-+.+... |+ ++.+|++.+..+++
T Consensus 21 ~~~gWr~LA-e~lg~~~~f--r~S~~el~~cslkvl~p~----gSPsk~LL~~~~~r---g~----Tv~~Ll~~L~~Mgh 86 (97)
T cd08783 21 DGKGWRKLA-ELAGSRGRF--RLSCLDLEQCSLKVLEPE----GSPSRSLLKLLGER---GC----TVTELSEFLQAMEH 86 (97)
T ss_pred ccCCHHHHH-HHHccCCcc--ccCHHHHHHHHHHHhcCC----CCchHHHHHHHHHc---CC----cHHHHHHHHHHhhh
Confidence 445566544 656666643 589999999999999832 23344555555543 44 66777777766654
No 485
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=20.72 E-value=4.6e+02 Score=22.94 Aligned_cols=87 Identities=14% Similarity=-0.037 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCccchhccCCCcccccccCCCCeEEEeCCC--CCCCCCCCC--CCChHHHHHhhchhc
Q 011792 21 KPMLSLAKLFSHAGFRITFVNTDQYHDRLFGNTDVTAFYKHFPNFLCTSIPD--GLPPDNPRF--GIYTKDWFCSNKPVS 96 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~--~~~~~~~~~~~~~~~ 96 (477)
.-+..+|+.|.+.|.++. . +....+.+.+.+ +.+..+.+ ++|+..-.. +.++.-.-..+.+..
T Consensus 11 ~~l~~lAk~L~~lGf~I~-A-T~GTAk~L~e~G-----------I~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~ 77 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-S-TGGTAKFLKEAG-----------IPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRD 77 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-E-ccHHHHHHHHcC-----------CeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCC
Confidence 347899999999999984 4 446667776643 44433332 344432111 222222222233222
Q ss_pred -HHHHHHHHhcCCCCCeEEEECCCcc
Q 011792 97 -KLAFRQLLMTPGRLPTCIISDSIMS 121 (477)
Q Consensus 97 -~~~l~~~l~~~~~~~D~vI~D~~~~ 121 (477)
.... ++-+..-...|+||++..-+
T Consensus 78 ~~~~~-~~~~~~i~~idlVvvNlYpF 102 (187)
T cd01421 78 NEEHK-DLEEHGIEPIDLVVVNLYPF 102 (187)
T ss_pred ChhHH-HHHHcCCCCeeEEEEcccCh
Confidence 2233 33333223889999987443
No 486
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.69 E-value=1.6e+02 Score=25.36 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCCCeEEEECCCcc---hHHHHHHHcCCCeEEE
Q 011792 97 KLAFRQLLMTPGRLPTCIISDSIMS---FAIDVAEELNIPIITF 137 (477)
Q Consensus 97 ~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lgiP~v~~ 137 (477)
...+.+++++. +||+|+.-.... .+..+|..+|.|++.-
T Consensus 80 a~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 34555666654 799999998777 5788999999999874
No 487
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=20.64 E-value=1.5e+02 Score=28.73 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCcEEEEEecCcccCCHHHHHHHHHHHHhCCCcEE-EEEecCCcCCCCCCCCCchhhHhhhcCCCceeeccCHHHHHh
Q 011792 284 QPSRSVLYVSFGSFIKLSGDQILEFWHGIVNSGKGFL-WVIRSDLIDGESGVGPVPAELDQGTKERGCIVSWAPQEEVLA 362 (477)
Q Consensus 284 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~ 362 (477)
.+++.+||++-|--+. .+.....+.++.++-..+|- +...+ ..|+ ....||.
T Consensus 123 nP~k~vVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hk----------~~pp----------------al~~ll~ 175 (355)
T PF01924_consen 123 NPDKEVVFFAVGFETT-APATAAAILQAKEEGIKNFSVLSSHK----------LTPP----------------ALEALLE 175 (355)
T ss_dssp -TTSEEEEEEEE-HHH-HHHHHHHHHHHHHHT-SSEEEEEEEE-----------CHH----------------HHHHHHH
T ss_pred CCCCceEEEEeCcccC-cHHHHHHHHHHHHcCCCCEEEEEecc----------ccHH----------------HHHHHHc
Confidence 4678899999886653 34445556666655444442 22211 2232 2445665
Q ss_pred cc--cccccccccCchhHHHHhhcCCceecCCccchhhhhHHHHhhhhceeeeccCCCCHHHHHHHHHHHHhHhHHHHHH
Q 011792 363 HQ--AIGGFLTHSGWNSTLESMVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMKDTCDRSTIEKLVRDLMDNKRDKIME 440 (477)
Q Consensus 363 ~~--~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~l~~~v~~ll~~~~~~~~~ 440 (477)
.. .+++||.=|=-.|+.-+=. +. .++++.|+-..+ ..+.+.+|..+|..++. .+.+
T Consensus 176 ~~~~~idGfi~PGHVs~I~G~~~----------------y~-~l~~~y~~P~vI-aGFEp~diL~ai~~lv~----qi~~ 233 (355)
T PF01924_consen 176 DPELKIDGFICPGHVSTIIGSEP----------------YE-FLAEEYGIPCVI-AGFEPLDILQAIYMLVK----QINE 233 (355)
T ss_dssp TT----SEEEEEHHHHHHHCCHH----------------HH-HHHHCC---EEE-E-SSHHHHHHHHHHHHH----HHHT
T ss_pred CCCCCccEEEeCCeeeEEecchh----------------hH-HHHHHcCCCeEE-cCCCHHHHHHHHHHHHH----HHHC
Confidence 54 6778888765554432211 11 223445555555 34788888888888876 2233
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 011792 441 STVQIAKMARDAVKEGGSSYRNLEKLIEDIRL 472 (477)
Q Consensus 441 ~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 472 (477)
+-.++.-..+..+.+.| ...+.++|+++.+
T Consensus 234 g~~~v~N~Y~r~V~~eG--N~~A~~~i~evFe 263 (355)
T PF01924_consen 234 GEAEVENQYPRVVKPEG--NPKAQELINEVFE 263 (355)
T ss_dssp T---EEES-TTT--TT----HHHHHHHHHHEE
T ss_pred CCCeEEEecceeeCCcc--CHHHHHHHHHHhC
Confidence 33344444444455566 5577888877643
No 488
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.62 E-value=1.9e+02 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEEcCCCCC-CHHHHHHHHHHHHhCCCeEEEEe
Q 011792 1 MEQTRVPHVVLLPFPAYG-HIKPMLSLAKLFSHAGFRITFVN 41 (477)
Q Consensus 1 m~~~~~~~il~~~~~~~G-Hv~p~l~La~~L~~rGH~Vt~~~ 41 (477)
|+...+-|+++++.++.+ -+ =.++|++|+++|++|++..
T Consensus 1 ~~~~l~~k~~lVTGas~~~GI--G~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSI--AWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CccccCCCEEEEeCCCCCCcH--HHHHHHHHHhCCCEEEEec
Confidence 443334578888887741 22 4789999999999998864
No 489
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.54 E-value=1.2e+02 Score=25.62 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.+|+++-.|. .-...++.|.+.||+|+++.+
T Consensus 14 ~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcC
Confidence 5677765543 337789999999999999964
No 490
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=20.51 E-value=1.5e+02 Score=27.27 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCccchhccC
Q 011792 7 PHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQYHDRLFG 51 (477)
Q Consensus 7 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~l~~ 51 (477)
--+++.-.|+.|.......++...+++|..|.+++..+..+.+.+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 346777779999999999999999999999999999776665544
No 491
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.47 E-value=57 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=21.0
Q ss_pred cccccccCchhHHHHhhc----CCceecCC
Q 011792 367 GGFLTHSGWNSTLESMVA----GVPMICWP 392 (477)
Q Consensus 367 ~~~I~HGG~gs~~eal~~----GvP~l~~P 392 (477)
+++|+-||=||++.+++. ++|++.+-
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 349999999999988664 67887763
No 492
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.45 E-value=3.3e+02 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCeEEEECCCcc------hHHHHHHHcCCCeEE
Q 011792 110 LPTCIISDSIMS------FAIDVAEELNIPIIT 136 (477)
Q Consensus 110 ~~D~vI~D~~~~------~~~~~A~~lgiP~v~ 136 (477)
++|+||+..-.- ..-.+|+.+|.|++.
T Consensus 60 r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 60 RADVVITTGGLGPTHDDLTAEAVAKALGRPLVL 92 (255)
T ss_pred CCCEEEECCCcCCCccHhHHHHHHHHhCCCccc
Confidence 799999876443 456799999999987
No 493
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=20.30 E-value=1.4e+02 Score=23.65 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 6 VPHVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 6 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
++.|-+.|.+|++.+.|.-.+-+.|.+.-.++.++++.+
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 688999999999999999999999999889999998854
No 494
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=20.29 E-value=1.7e+02 Score=26.95 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 011792 8 HVVLLPFPAYGHIKPMLSLAKLFSHAGFRITFVNTDQ 44 (477)
Q Consensus 8 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 44 (477)
.|+|+.=||-|-..-...||..|+++|++|.++=.+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4777755888999999999999999999999985533
No 495
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=20.27 E-value=73 Score=25.23 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=36.0
Q ss_pred hhcCCceecCCccchhhhhHHHHhhhhceeeecc-----------C----CCCHHHHHHHHHHHH
Q 011792 382 MVAGVPMICWPQVGDQQVNSRCVSEIWKIGFDMK-----------D----TCDRSTIEKLVRDLM 431 (477)
Q Consensus 382 l~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~-----------~----~~~~~~l~~~v~~ll 431 (477)
+.|+.++...|..+|.-.|+-|+.+ |.-..++ + .++.|++..+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5667788899999999999999953 6554442 1 477888888887553
No 496
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.25 E-value=2.2e+02 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCCCC----HHHHHHHHHHHHhCCCeEEEEeC
Q 011792 6 VPHVVLLPFPAYGH----IKPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 6 ~~~il~~~~~~~GH----v~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
++||+++..|..+. +.....++++|.+.||+|.++..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 68999998866542 35677899999999999988743
No 497
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=20.22 E-value=2e+02 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCe-EEEEeC
Q 011792 9 VVLLPFPAYGHIKPMLSLAKLFSHAGFR-ITFVNT 42 (477)
Q Consensus 9 il~~~~~~~GHv~p~l~La~~L~~rGH~-Vt~~~~ 42 (477)
|+|.-.|..|--.....|.++|+++||. ++.+..
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 6777789999999999999999999976 444433
No 498
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=20.17 E-value=95 Score=27.59 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCCeEEEECCCcc-------hHHHHHHHcCCCeEEE
Q 011792 99 AFRQLLMTPGRLPTCIISDSIMS-------FAIDVAEELNIPIITF 137 (477)
Q Consensus 99 ~l~~~l~~~~~~~D~vI~D~~~~-------~~~~~A~~lgiP~v~~ 137 (477)
.+-++++....+||+|++|..-. .|..++-.+++|+|.+
T Consensus 84 ~~l~a~~~l~~~~d~ilVDG~GiaHPR~~GlAsH~Gv~l~~PtIGV 129 (212)
T COG1515 84 LLLKALEKLSVKPDLLLVDGHGIAHPRRLGLASHIGVLLDVPTIGV 129 (212)
T ss_pred HHHHHHHhcCCCCCEEEEcCcceecCcccChhheeeeeeCCCceeE
Confidence 44455555555999999998765 2344455556888775
No 499
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=20.12 E-value=1.3e+02 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 011792 21 KPMLSLAKLFSHAGFRITFVNT 42 (477)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~ 42 (477)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7899999999999999988755
No 500
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.05 E-value=2.9e+02 Score=22.12 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCCCHHHHHH---HHHHHHhHhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q 011792 416 DTCDRSTIEK---LVRDLMDNKRDKIMESTVQIAKMARDAVKEGGSSYRNLEKLIEDIRLMAFK 476 (477)
Q Consensus 416 ~~~~~~~l~~---~v~~ll~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~~ 476 (477)
..++++++.+ .+.++..| .++-.-...++++.+.++ +.+...-++++|-+++..+.|
T Consensus 96 ~~l~pdevqqf~tdlt~ltkd-spktqva~lrfkkvmskv---~t~vasgvr~ivvdvlseaak 155 (160)
T COG4306 96 ENLNPDEVQQFRTDLTDLTKD-SPKTQVATLRFKKVMSKV---ATSVASGVRDIVVDVLSEAAK 155 (160)
T ss_pred ccCCHHHHHHHHhhHHHHhhc-CchhHHHHHHHHHHHHHH---HHHHhcchhHHHHHHHHHHHH
Confidence 3567766544 44444443 166667777777777776 555555577777777766554
Done!