Query 011794
Match_columns 477
No_of_seqs 124 out of 1450
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12849 groEL chaperonin GroE 100.0 2.7E-96 6E-101 780.4 54.7 471 1-474 61-535 (542)
2 PRK12851 groEL chaperonin GroE 100.0 4E-96 9E-101 779.8 54.5 473 1-476 62-539 (541)
3 PRK00013 groEL chaperonin GroE 100.0 5.9E-96 1E-100 777.9 54.3 473 1-476 61-539 (542)
4 PRK12852 groEL chaperonin GroE 100.0 2.2E-95 5E-100 776.3 55.0 472 1-474 66-538 (545)
5 PRK14104 chaperonin GroEL; Pro 100.0 9.5E-95 2.1E-99 769.3 54.3 474 1-476 66-541 (546)
6 PRK12850 groEL chaperonin GroE 100.0 2.7E-94 5.8E-99 766.3 54.6 464 1-466 62-529 (544)
7 PTZ00114 Heat shock protein 60 100.0 3.1E-94 6.7E-99 768.2 54.6 463 2-465 78-544 (555)
8 cd03344 GroEL GroEL_like type 100.0 6.3E-94 1.4E-98 760.4 52.5 457 1-459 59-519 (520)
9 TIGR02348 GroEL chaperonin Gro 100.0 5.9E-93 1.3E-97 754.4 53.8 460 1-462 60-523 (524)
10 PLN03167 Chaperonin-60 beta su 100.0 4.2E-93 9.2E-98 760.7 51.9 472 1-473 117-593 (600)
11 CHL00093 groEL chaperonin GroE 100.0 1.8E-91 3.8E-96 743.9 53.1 461 1-463 61-527 (529)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6.4E-79 1.4E-83 650.0 43.6 407 1-462 59-527 (527)
13 TIGR02339 thermosome_arch ther 100.0 1.1E-78 2.3E-83 647.6 44.5 399 1-459 67-518 (519)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 1.3E-78 2.9E-83 645.5 44.7 404 1-464 67-529 (531)
15 cd03343 cpn60 cpn60 chaperonin 100.0 1.8E-78 3.8E-83 646.4 44.5 401 1-461 66-517 (517)
16 KOG0356 Mitochondrial chaperon 100.0 7.8E-79 1.7E-83 611.8 38.3 462 1-465 79-541 (550)
17 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.9E-79 1.5E-83 642.5 39.1 395 1-461 63-483 (484)
18 TIGR02340 chap_CCT_alpha T-com 100.0 4E-78 8.7E-83 644.6 44.5 409 1-464 63-533 (536)
19 TIGR02344 chap_CCT_gamma T-com 100.0 4.5E-78 9.7E-83 643.6 43.4 403 1-463 67-524 (525)
20 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.6E-78 1.2E-82 642.4 44.0 405 1-462 67-521 (522)
21 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.9E-77 8.5E-82 634.4 46.7 402 1-463 66-516 (517)
22 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.8E-77 6E-82 636.5 45.0 402 1-460 59-515 (515)
23 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.9E-77 4.1E-82 638.5 42.7 398 1-458 74-525 (526)
24 KOG0361 Chaperonin complex com 100.0 1.1E-78 2.4E-83 584.0 29.3 409 1-466 71-528 (543)
25 TIGR02342 chap_CCT_delta T-com 100.0 4.6E-77 9.9E-82 633.9 44.6 403 1-461 60-517 (517)
26 TIGR02345 chap_CCT_eta T-compl 100.0 2.5E-77 5.4E-82 636.6 42.3 404 1-461 68-520 (522)
27 PTZ00212 T-complex protein 1 s 100.0 5.9E-77 1.3E-81 634.8 45.1 401 1-462 78-527 (533)
28 TIGR02343 chap_CCT_epsi T-comp 100.0 4.5E-77 9.8E-82 635.0 43.2 399 1-459 78-530 (532)
29 TIGR02346 chap_CCT_theta T-com 100.0 1.1E-76 2.4E-81 631.9 45.8 410 1-474 69-530 (531)
30 TIGR02341 chap_CCT_beta T-comp 100.0 1E-75 2.3E-80 622.8 46.9 403 1-464 67-518 (519)
31 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.6E-76 5.5E-81 622.9 38.6 382 1-459 67-479 (480)
32 COG0459 GroL Chaperonin GroEL 100.0 2.7E-76 5.9E-81 619.9 31.3 412 1-465 62-518 (524)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.3E-74 1.8E-78 602.6 42.4 385 1-460 59-471 (472)
34 cd00309 chaperonin_type_I_II c 100.0 1.4E-73 3.1E-78 601.6 44.3 382 1-459 59-464 (464)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7E-71 1.5E-75 585.4 39.6 402 1-462 40-485 (485)
36 KOG0363 Chaperonin complex com 100.0 8.2E-70 1.8E-74 519.7 29.9 406 1-467 71-525 (527)
37 KOG0358 Chaperonin complex com 100.0 1.1E-67 2.4E-72 507.3 27.2 405 2-460 78-533 (534)
38 KOG0364 Chaperonin complex com 100.0 3.1E-66 6.8E-71 505.4 24.1 404 1-464 70-524 (527)
39 KOG0362 Chaperonin complex com 100.0 4.7E-63 1E-67 490.5 33.6 405 1-469 77-529 (537)
40 KOG0360 Chaperonin complex com 100.0 1.4E-63 2.9E-68 491.2 25.1 411 1-467 70-542 (545)
41 KOG0359 Chaperonin complex com 100.0 6.1E-59 1.3E-63 453.7 26.1 400 1-461 68-515 (520)
42 KOG0357 Chaperonin complex com 100.0 6.2E-56 1.3E-60 420.9 17.9 315 2-461 71-396 (400)
43 cd03333 chaperonin_like chaper 100.0 5.8E-29 1.3E-33 235.3 18.6 192 77-344 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 2.9E-28 6.3E-33 237.3 19.4 198 89-345 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.4 9.6E-13 2.1E-17 146.8 14.0 207 89-354 333-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.7 7.5E-05 1.6E-09 79.8 6.7 120 172-313 237-356 (524)
47 smart00574 POX domain associat 38.0 80 0.0017 27.7 5.3 60 293-365 68-128 (140)
48 COG1433 Uncharacterized conser 37.1 2E+02 0.0044 24.6 7.6 32 170-202 56-87 (121)
49 TIGR03659 IsdE heme ABC transp 34.1 98 0.0021 30.3 6.2 58 172-234 84-141 (289)
50 PRK13600 putative ribosomal pr 32.3 2.1E+02 0.0046 22.7 6.6 55 170-234 20-74 (84)
51 cd01143 YvrC Periplasmic bindi 30.6 1.4E+02 0.003 26.8 6.3 58 172-234 53-111 (195)
52 PF07818 HCNGP: HCNGP-like pro 28.3 67 0.0015 26.3 3.2 54 389-449 32-85 (96)
53 COG4148 ModC ABC-type molybdat 27.5 70 0.0015 31.8 3.6 45 149-193 143-193 (352)
54 PF07526 POX: Associated with 27.3 1.2E+02 0.0026 26.6 4.8 59 294-365 69-128 (140)
55 PRK06683 hypothetical protein; 25.5 3E+02 0.0064 21.7 6.3 54 172-235 20-73 (82)
56 PRK13601 putative L7Ae-like ri 24.5 3E+02 0.0065 21.7 6.1 54 172-235 17-70 (82)
57 cd01461 vWA_interalpha_trypsin 22.9 2.3E+02 0.005 24.7 6.1 19 219-237 140-158 (171)
58 PRK13602 putative ribosomal pr 21.6 3.9E+02 0.0085 20.9 6.4 26 172-197 20-45 (82)
59 cd01141 TroA_d Periplasmic bin 21.5 2.8E+02 0.0061 24.8 6.4 37 172-212 62-99 (186)
60 cd02866 PseudoU_synth_TruA_Arc 21.5 92 0.002 29.6 3.2 40 437-476 173-215 (221)
61 PF01113 DapB_N: Dihydrodipico 20.6 1.9E+02 0.0042 24.4 4.8 42 156-199 70-111 (124)
62 PRK03379 vitamin B12-transport 20.4 2.6E+02 0.0056 26.8 6.3 57 172-233 65-122 (260)
No 1
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.7e-96 Score=780.43 Aligned_cols=471 Identities=57% Similarity=0.874 Sum_probs=452.0
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++++|+++.
T Consensus 61 ~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~ 140 (542)
T PRK12849 61 LEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGS 140 (542)
T ss_pred cCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5799 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
++|.++|+||+++++.+++++++|+..++++|.|.++.|++++|++++++|++|+++|.+|+|.+++++|++.++||+|+
T Consensus 141 ~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il 220 (542)
T PRK12849 141 EEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLIL 220 (542)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEE
Confidence 89999999999999999999999999999888888889999998669999999999999999998888899999999999
Q ss_pred EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794 157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 236 (477)
Q Consensus 157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~ 236 (477)
++|+.|++++++.++++++.+.|+||||++++|++.++++|.+|+++|+++|++|++|++++.++++++|||.+|||+++
T Consensus 221 i~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v 300 (542)
T PRK12849 221 LTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI 300 (542)
T ss_pred eecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
++..+.++++++.++||+|+.|++++++++++++|++++.+..|+++++++++++.++|++++|++|++||+++++||+|
T Consensus 301 ~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~i 380 (542)
T PRK12849 301 SEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKV 380 (542)
T ss_pred cccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 98777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 396 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG 396 (477)
||+|+.+++|++|+++||++++++++++|+|||||++|++++++|.+++ +.++.+ ++++++|++||+.||++||+|||
T Consensus 381 rG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~-~~~i~~~a~Al~~ip~~La~NaG 458 (542)
T PRK12849 381 GAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQ-AAGVEIVRRALEAPLRQIAENAG 458 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHH-HHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999988 677765 79999999999999999999999
Q ss_pred CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCC
Q 011794 397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 474 (477)
Q Consensus 397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~ 474 (477)
+|+.+++++|++.+.++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|..+|+...| |+.-||
T Consensus 459 ~d~~~vi~~L~~~~~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~ 535 (542)
T PRK12849 459 LDGSVVVAKVLELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGG 535 (542)
T ss_pred CCHHHHHHHHHhhCCCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCC
Confidence 99999999999877789999999999999999999999999999999999999999999999998876555 655555
No 2
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-96 Score=779.85 Aligned_cols=473 Identities=55% Similarity=0.837 Sum_probs=451.3
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.
T Consensus 62 ~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~ 141 (541)
T PRK12851 62 LEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTN 141 (541)
T ss_pred CCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5799 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCC-ccccceEEEEeeEEcccccCCCCccCccccchhccceeE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS-SFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARV 155 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~-~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~I 155 (477)
+++.++|++|+++++.+++++++|+..++++|.|.++.+. +..++ ++++|++|+++|.+|+|++++++|++.++||+|
T Consensus 142 ~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~I 220 (541)
T PRK12851 142 AEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETEL-EVVEGMQFDRGYLSPYFVTDADKMEAELEDPYI 220 (541)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcce-EEEEEEEecCCccccccccCCCCCeEEecccEE
Confidence 8999999999999999999999999999988877765443 44454 999999999999999999988899999999999
Q ss_pred EEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceE
Q 011794 156 LVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 235 (477)
Q Consensus 156 ll~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~ 235 (477)
+++|+++++.+++.++++++.+.|+||||++++|++.++++|..|+++|.++|+||++|+|+++++++|+|||.+|||++
T Consensus 221 lv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~ 300 (541)
T PRK12851 221 LIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 300 (541)
T ss_pred EEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEE
Q 011794 236 QAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIK 315 (477)
Q Consensus 236 ~~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~ 315 (477)
+++..++++++++.++||+|+.|++.+++|+++++|+++.++.+|++.++++++++.+++++++|++|++||+|+++||+
T Consensus 301 i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~ 380 (541)
T PRK12851 301 ISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIR 380 (541)
T ss_pred eccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99777777899998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011794 316 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNA 395 (477)
Q Consensus 316 v~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~Na 395 (477)
|||+|+.+++|++|+++||++++++++++|+|||||++|+++|.+|++++.. .+. +++++++|++||+.||++|++||
T Consensus 381 irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~-~~~~~~~~a~AL~~ip~~La~Na 458 (541)
T PRK12851 381 VGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGD-QRTGVEIVRRALEAPVRQIAENA 458 (541)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998875 565 47999999999999999999999
Q ss_pred CCChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCCC
Q 011794 396 GVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGL 475 (477)
Q Consensus 396 G~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~~ 475 (477)
|+|+.+++++|++.+.++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+||++|..+|++.+.+|.+|||-
T Consensus 459 G~d~~~vl~~l~~~~~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~ 538 (541)
T PRK12851 459 GAEGSVVVGKLREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGG 538 (541)
T ss_pred CCCHHHHHHHHHhhCCCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCcc
Confidence 99999999999987778999999999999999999999999999999999999999999999999998877777999997
Q ss_pred C
Q 011794 476 M 476 (477)
Q Consensus 476 ~ 476 (477)
|
T Consensus 539 ~ 539 (541)
T PRK12851 539 M 539 (541)
T ss_pred c
Confidence 7
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.9e-96 Score=777.90 Aligned_cols=473 Identities=57% Similarity=0.858 Sum_probs=450.8
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.
T Consensus 61 ~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~ 140 (542)
T PRK00013 61 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDK 140 (542)
T ss_pred CCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5799 899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCC-ccccceEEEEeeEEcccccCCCCccCccccchhccceeE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS-SFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARV 155 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~-~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~I 155 (477)
++|.++|+||+++++.+++++++|+..++++|.|.++.+. ...|+ ++++|++|+++|.+|+|.+++++|++.++||+|
T Consensus 141 ~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~-~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~I 219 (542)
T PRK00013 141 EEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETEL-EVVEGMQFDRGYLSPYFVTDPEKMEAELENPYI 219 (542)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceE-EEEEeEEecCCcccccccccccCCeEEEecCEE
Confidence 9999999999999999999999999999988877775443 44565 999999999999999999988889999999999
Q ss_pred EEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceE
Q 011794 156 LVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 235 (477)
Q Consensus 156 ll~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~ 235 (477)
+++|++|++++++.++++++.+.|+||||++++|++.++++|..|+++|+++|++||+|+|++.++++|+|||.+|||++
T Consensus 220 lv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~ 299 (542)
T PRK00013 220 LITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTV 299 (542)
T ss_pred EEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEE
Q 011794 236 QAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIK 315 (477)
Q Consensus 236 ~~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~ 315 (477)
++++.+.++++++.++||+|+.|+++++++++|++|+++..+.+|+++++++++++.+++++++|++|++||+|+++||+
T Consensus 300 i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~ 379 (542)
T PRK00013 300 ISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIK 379 (542)
T ss_pred ecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99877778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011794 316 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNA 395 (477)
Q Consensus 316 v~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~Na 395 (477)
|||+|+.+++|++|+++||++++++++++|+|||||++|++++++|+++ .+.++.+ ++++++|++||+.||++|++||
T Consensus 380 irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~-~~~i~~~a~Al~~ip~~La~Na 457 (542)
T PRK00013 380 VGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDE-ATGINIVLRALEAPLRQIAENA 457 (542)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988 5666765 7999999999999999999999
Q ss_pred CCChHHHHHHHHcc-CCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCC
Q 011794 396 GVEGEVVVEKVKDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 474 (477)
Q Consensus 396 G~d~~~~l~~l~~~-~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~ 474 (477)
|+|+.+++++|++. ++++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|..+|++.+.+|+|-||
T Consensus 458 G~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~ 537 (542)
T PRK00013 458 GLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGG 537 (542)
T ss_pred CCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCC
Confidence 99999999999874 45799999999999999999999999999999999999999999999999999887788888787
Q ss_pred CC
Q 011794 475 LM 476 (477)
Q Consensus 475 ~~ 476 (477)
-|
T Consensus 538 ~~ 539 (542)
T PRK00013 538 GM 539 (542)
T ss_pred CC
Confidence 66
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.2e-95 Score=776.28 Aligned_cols=472 Identities=54% Similarity=0.831 Sum_probs=449.1
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIK 80 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~ 80 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.+++.
T Consensus 66 ~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~ 145 (545)
T PRK12852 66 FENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIA 145 (545)
T ss_pred ccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999998878899
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEEEecc
Q 011794 81 AVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 160 (477)
Q Consensus 81 ~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~ 160 (477)
++|++|+++++.+++++++|+.+++++|.|.++.|++..+.+++++|++|+++|.+|+|++++++|+..++||+|+++|+
T Consensus 146 ~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~ 225 (545)
T PRK12852 146 QVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEK 225 (545)
T ss_pred HHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecC
Confidence 99999998899999999999999999898888888887444499999999999999999999999999999999999999
Q ss_pred ccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCC
Q 011794 161 KISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240 (477)
Q Consensus 161 ~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~ 240 (477)
+++++++++++++++.+.|+||||++++|+++++++|..|+++|+++|++|++|+|++.++++|+|||.+|||+++++..
T Consensus 226 ~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~ 305 (545)
T PRK12852 226 KLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDL 305 (545)
T ss_pred ccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCC
Q 011794 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAAT 320 (477)
Q Consensus 241 ~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t 320 (477)
+.++++++.++||+|+.|+++++++++++++++++.+++|++.++++++++.+.|++++|++|++||+++++||+|||+|
T Consensus 306 ~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t 385 (545)
T PRK12852 306 GIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (545)
T ss_pred CCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChH
Q 011794 321 ETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGE 400 (477)
Q Consensus 321 ~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~ 400 (477)
+.+++|++|+++||++++++++++|+|||||++|++++++|.+++.+ .+. +++++++|++||+.||++|++|||+|+.
T Consensus 386 ~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~-~q~~i~~~a~AL~~ip~~La~NaG~d~~ 463 (545)
T PRK12852 386 EVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NAD-VQAGINIVLKALEAPIRQIAENAGVEGS 463 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcH-HHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999998865 555 5799999999999999999999999999
Q ss_pred HHHHHHHc-cCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCC
Q 011794 401 VVVEKVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 474 (477)
Q Consensus 401 ~~l~~l~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~ 474 (477)
+++++|++ .++++|||+.+|++.||++.|||||+.+|.++|+.|+|+|++||+||++|..+|+++..++-+|+|
T Consensus 464 ~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~ 538 (545)
T PRK12852 464 IVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGG 538 (545)
T ss_pred HHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCC
Confidence 99999987 356799999999999999999999999999999999999999999999999988876544555554
No 5
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=9.5e-95 Score=769.27 Aligned_cols=474 Identities=53% Similarity=0.834 Sum_probs=450.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIK 80 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~ 80 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|+++.+++.
T Consensus 66 ~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~ 145 (546)
T PRK14104 66 FENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIA 145 (546)
T ss_pred ccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998778899
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEEEecc
Q 011794 81 AVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 160 (477)
Q Consensus 81 ~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~ 160 (477)
++|++|+++++.+++++++|+..++.+|.|.++.+++.+|++++++|++|+++|.+|||+++++.++.++++|+|+++|.
T Consensus 146 ~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~ 225 (546)
T PRK14104 146 QVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK 225 (546)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehh
Confidence 99999999999999999999999999998888888888655599999999999999999999999999999999999999
Q ss_pred ccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCC
Q 011794 161 KISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240 (477)
Q Consensus 161 ~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~ 240 (477)
+++++++++++++++.++|+||||++++|+++|+++|..|+++++++|+||++|+||+.++++++|||.+|||+++++..
T Consensus 226 ~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~ 305 (546)
T PRK14104 226 KLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDL 305 (546)
T ss_pred hhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCC
Q 011794 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAAT 320 (477)
Q Consensus 241 ~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t 320 (477)
+..+++++.++||+|+.+++++++++++++|++++.+.+|+++++++++++.++|++++|++|++||+++++||+|||+|
T Consensus 306 ~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t 385 (546)
T PRK14104 306 GIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (546)
T ss_pred CCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChH
Q 011794 321 ETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGE 400 (477)
Q Consensus 321 ~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~ 400 (477)
+.+++|++|+++||++++++++++|+|||||++|++++.+|.++.. ..+ ++++++++|++||+.||++|++|||+|+.
T Consensus 386 ~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~-~~~~~i~~~a~Al~~ip~~La~NaG~d~~ 463 (546)
T PRK14104 386 EVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKT-KND-DQKTGVEIVRKALSAPARQIAINAGEDGS 463 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHhhHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999998743 344 45799999999999999999999999999
Q ss_pred HHHHHHHc-cCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCC-CCCCCC
Q 011794 401 VVVEKVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAA-PPQGLM 476 (477)
Q Consensus 401 ~~l~~l~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~-~~~~~~ 476 (477)
+++++|++ ..+++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|..+|++....|+ +|+|-|
T Consensus 464 ~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~~~~~~~~ 541 (546)
T PRK14104 464 VIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGM 541 (546)
T ss_pred HHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Confidence 99999987 45679999999999999999999999999999999999999999999999999988766666 677544
No 6
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.7e-94 Score=766.30 Aligned_cols=464 Identities=53% Similarity=0.810 Sum_probs=442.8
Q ss_pred CCChH----HHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENAG----AALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp~----akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++||+ |+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++.
T Consensus 62 i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~ 141 (544)
T PRK12850 62 LEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSS 141 (544)
T ss_pred CCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 57999 99999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
++|.++|++|+++++.+++++++|+..++++|.|.++.+....+++++++|++|+++|.+|+|+++.++|+..++||+|+
T Consensus 142 ~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 221 (544)
T PRK12850 142 KEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYIL 221 (544)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEE
Confidence 89999999999999999999999999999888777765554555569999999999999999998888899999999999
Q ss_pred EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794 157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 236 (477)
Q Consensus 157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~ 236 (477)
++|+++++.+++.++++++.+.|+||||++++|+++++++|.+|+++|.++|+||++|+|++.++++|+|||.+|||+++
T Consensus 222 l~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i 301 (544)
T PRK12850 222 LHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVI 301 (544)
T ss_pred EEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
++..++++++++.++||+|+.|++.++++++|++|+++..+..|+++++++++++.+++++++|++|++||+++++||+|
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i 381 (544)
T PRK12850 302 SEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRV 381 (544)
T ss_pred ccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEE
Confidence 97777778999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 396 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG 396 (477)
||+|+.+++|++|+++||++++++++++|+|||||++|++++.+|+++ .+.++.+ ++++++|++||+.||++|++|||
T Consensus 382 rG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~-~~~i~~~a~Al~~ip~~La~NaG 459 (544)
T PRK12850 382 GGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADE-TAGIDIVRRALEEPLRQIATNAG 459 (544)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988 5566654 79999999999999999999999
Q ss_pred CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q 011794 397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKT 466 (477)
Q Consensus 397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~ 466 (477)
+|+.+++++|++.+.++|+|+.+|++.||++.|||||+.+|.++++.|+++|++|||||++|..+|++.+
T Consensus 460 ~d~~~v~~~l~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~ 529 (544)
T PRK12850 460 FEGSVVVGKVAELPGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAA 529 (544)
T ss_pred CCHHHHHHHHHhhCCCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCC
Confidence 9999999999987778999999999999999999999999999999999999999999999999887644
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.1e-94 Score=768.24 Aligned_cols=463 Identities=55% Similarity=0.826 Sum_probs=443.8
Q ss_pred CChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHH
Q 011794 2 ENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKA 81 (477)
Q Consensus 2 ~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~~ 81 (477)
+||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.+
T Consensus 78 ~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~ 157 (555)
T PTZ00114 78 ENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILN 157 (555)
T ss_pred hhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEEEeccc
Q 011794 82 VATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 161 (477)
Q Consensus 82 va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~~ 161 (477)
+|+||+++++.+++++++|+..++++|.|.++.|++++||+++++|++|+++|.+|+|++++++|+..++||+|+++|++
T Consensus 158 va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~ 237 (555)
T PTZ00114 158 VATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKK 237 (555)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCC
Confidence 99999998999999999999999998989999999999997899999999999999999988899999999999999999
Q ss_pred cCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCC-C
Q 011794 162 ISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGD-L 240 (477)
Q Consensus 162 i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~-~ 240 (477)
|++++++.++++++.+.|+||||++++|+++++++|..|+++|+++|+||++|++|++++++|+|||.+|||+++++. .
T Consensus 238 L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~ 317 (555)
T PTZ00114 238 ISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNV 317 (555)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999965 4
Q ss_pred CCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCC
Q 011794 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAAT 320 (477)
Q Consensus 241 ~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t 320 (477)
+..+++++.++||+|+.|+++++++++++++++++.+++|+..++.+++...+++++++|++|++||+++++||+|||+|
T Consensus 318 ~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t 397 (555)
T PTZ00114 318 GLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGAS 397 (555)
T ss_pred ccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 55668888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 011794 321 ETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD--KLEDADERLGADIVQKALVAPASLIAHNAGVE 398 (477)
Q Consensus 321 ~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~--~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d 398 (477)
+.+++|++|+++||++++++++++|+|||||++|++||.+|.+++. +.++.+ ++++++|++||+.||++|++|||+|
T Consensus 398 ~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~-~~~i~~~a~AL~~ip~~La~NaG~d 476 (555)
T PTZ00114 398 EVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQ-RTGVKIVRNALRLPTKQIAENAGVE 476 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999989999999999999999998875 456664 7999999999999999999999999
Q ss_pred hHHHHHHHHc-cCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q 011794 399 GEVVVEKVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 465 (477)
Q Consensus 399 ~~~~l~~l~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~ 465 (477)
+.+++++|++ +++++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|...|++.
T Consensus 477 ~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 477 GAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred HHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCccc
Confidence 9999999987 677899999999999999999999999999999999999999999999999877663
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.3e-94 Score=760.44 Aligned_cols=457 Identities=59% Similarity=0.890 Sum_probs=442.4
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.
T Consensus 59 ~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~ 138 (520)
T cd03344 59 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTK 138 (520)
T ss_pred cCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5799 999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
+++.++|+|++++++.+++++++|+..++.+|.|.+++|+++.|++++++|++|+++|.+|+|.++|++|++.++||+|+
T Consensus 139 ~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il 218 (520)
T cd03344 139 EEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYIL 218 (520)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEE
Confidence 99999999999999999999999999999888888899999999669999999999999999998888899999999999
Q ss_pred EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794 157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 236 (477)
Q Consensus 157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~ 236 (477)
++|+++++++++.++++++.+.|+||||++++|+++++++|.+|+++|+++|++||+|+++++++++++|||.+|||+++
T Consensus 219 i~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~ 298 (520)
T cd03344 219 LTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVI 298 (520)
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
+++.+.++++++.++||+|+.|++++++++|+++|++++++++|+++++++++++.+++++++|++|++||+|+.+||+|
T Consensus 299 ~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~i 378 (520)
T cd03344 299 SEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKV 378 (520)
T ss_pred cccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 98777788999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 396 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG 396 (477)
||+|+.+++|++|+++||++++++++++|+|||||++|++++++|++++. .++.+ ++++++|++||+.||++|++|||
T Consensus 379 rG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~-~~~~~~~a~Al~~ip~~La~NaG 456 (520)
T cd03344 379 GGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDE-KLGIEIVRRALEAPLRQIAENAG 456 (520)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999987 66665 79999999999999999999999
Q ss_pred CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 011794 397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 459 (477)
Q Consensus 397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~ 459 (477)
+|+.+++++|++.+.++|+|+.+|++.||++.|||||+.+|.++++.|+++|++||+||.+|.
T Consensus 457 ~d~~~vi~~l~~~~~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 457 VDGSVVVEKVLESPDGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred CCHHHHHHHHHhhcCCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 999999999998766999999999999999999999999999999999999999999999885
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5.9e-93 Score=754.35 Aligned_cols=460 Identities=60% Similarity=0.907 Sum_probs=441.2
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++.
T Consensus 60 ~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~ 139 (524)
T TIGR02348 60 LEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGK 139 (524)
T ss_pred CCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 5799 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
+++.++|++|.++++++++++++|+..+++++.|.++.|+...|.+++++|++|+++|.+|+|.+++++|++.++||+|+
T Consensus 140 ~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il 219 (524)
T TIGR02348 140 KEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYIL 219 (524)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceee
Confidence 89999999999999999999999999999888888888888866559999999999999999998888999999999999
Q ss_pred EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794 157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 236 (477)
Q Consensus 157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~ 236 (477)
++|+++++++++.++++++.+.|+||||++++|+++++++|..|+++|+++|++|++|++++.++++++|||.+|||+++
T Consensus 220 i~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i 299 (524)
T TIGR02348 220 ITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVI 299 (524)
T ss_pred eccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
+++.++++++++.++||+|+.|++.++++++++++++++.+.+|+..++++++++.+++++++|++|++||+|+++||+|
T Consensus 300 ~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i 379 (524)
T TIGR02348 300 SEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKV 379 (524)
T ss_pred cccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 98878789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 396 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG 396 (477)
||+|+.+++|++|+++||++++++++++|+|||||++|++++++|.+ ..+.++.+ ++++++|++||+.||++|++|||
T Consensus 380 rG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~-~~~~~~~a~AL~~ip~~La~NaG 457 (524)
T TIGR02348 380 GAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDE-AIGIDIVKRALEAPLRQIAENAG 457 (524)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHH-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999998 66666654 79999999999999999999999
Q ss_pred CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 011794 397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 462 (477)
Q Consensus 397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~ 462 (477)
+|+.+++++|++...++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|...|
T Consensus 458 ~d~~~v~~~l~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 458 KDGAVVAEKVKESKGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred CCHHHHHHHHHhcCCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 999999999987544599999999999999999999999999999999999999999999997654
No 10
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=4.2e-93 Score=760.68 Aligned_cols=472 Identities=53% Similarity=0.809 Sum_probs=450.4
Q ss_pred CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++|| +|+|++++|++||+++||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.|+++
T Consensus 117 ~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d- 195 (600)
T PLN03167 117 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED- 195 (600)
T ss_pred cCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-
Confidence 5788 69999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
++|.++|++|+++++.|++++++|+.+++++|.|.++.|++++|++++++|++|+++|.||||++++++|+++++||+|+
T Consensus 196 ~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Il 275 (600)
T PLN03167 196 SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLL 275 (600)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEE
Confidence 67999999999999999999999999999889888899999999889999999999999999999999999999999999
Q ss_pred EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794 157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 236 (477)
Q Consensus 157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~ 236 (477)
++|++|++++++.++++++.+.|+||||++++|+++++++|+.|+++|..+|++||+|+|++.++++|+|||.+|||+++
T Consensus 276 l~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i 355 (600)
T PLN03167 276 LVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVI 355 (600)
T ss_pred EEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
+++.++++++++.++||+|++|++.+++++++++.++++.+++|+.+++..++.+.++|+++++++|+++|++++++|+|
T Consensus 356 ~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~v 435 (600)
T PLN03167 356 REEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQV 435 (600)
T ss_pred cccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEe
Confidence 98777788999999999999999999999999988899999999999999999999999999999999999999888889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 396 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG 396 (477)
||+|+.+++|++|+++||++++++++++|+|||||++|++|+.+|.+++.+.++.+++.+++++++||+.||++||+|||
T Consensus 436 gG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG 515 (600)
T PLN03167 436 GAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAG 515 (600)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999987778888778899999999999999999999
Q ss_pred CChHHHHHHHHc-cCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCC
Q 011794 397 VEGEVVVEKVKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQ 473 (477)
Q Consensus 397 ~d~~~~l~~l~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~ 473 (477)
+|+.+++++|++ +++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+||++|..+|.++++.+++|+
T Consensus 516 ~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~~~~~~~ 593 (600)
T PLN03167 516 VNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPM 593 (600)
T ss_pred CCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Confidence 999999999984 56789999999999999999999999999999999999999999999999988766554445554
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.8e-91 Score=743.88 Aligned_cols=461 Identities=56% Similarity=0.864 Sum_probs=438.1
Q ss_pred CCChHH----HHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794 1 MENAGA----ALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR 76 (477)
Q Consensus 1 ~~hp~a----kll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~ 76 (477)
++||++ +|++++|.+|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|+++.
T Consensus 61 ~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~ 140 (529)
T CHL00093 61 LEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDI 140 (529)
T ss_pred CcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 579999 5889899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
++|.++|++|+++++.|++++++|+..++++|.|.++.|+...+.+++++|++|+++|.+|+|+++|++|+.+++||+|+
T Consensus 141 ~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Il 220 (529)
T CHL00093 141 QAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYIL 220 (529)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceeh
Confidence 99999999999999999999999999999888888877765555559999999999999999999988899999999999
Q ss_pred EeccccCCH-HhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceE
Q 011794 157 VTDQKISAI-KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 235 (477)
Q Consensus 157 l~~~~i~~~-~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~ 235 (477)
++|++|+.. .+++++++++.+.|+||||++++|+++++++|..|+.+|+++|+||+.|++++.++++++|||.+|||++
T Consensus 221 i~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~ 300 (529)
T CHL00093 221 LTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQV 300 (529)
T ss_pred hhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEE
Confidence 999999987 7899999999999999999999999999999998988888999999999999999999999999999999
Q ss_pred ecCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEE
Q 011794 236 QAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIK 315 (477)
Q Consensus 236 ~~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~ 315 (477)
++++.+.+++++++++||+|+.|+++++++++|+ .++++.+..|+.+++++++.+.+++++++|++|+++|+|+++||+
T Consensus 301 i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~ 379 (529)
T CHL00093 301 ITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIK 379 (529)
T ss_pred ecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 9988787899999999999999999999999998 567899999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhc-cCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011794 316 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHN 394 (477)
Q Consensus 316 v~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~i~~~a~AL~~ip~~L~~N 394 (477)
|||+|+.+++|++|+++||++++++++++|+|||||++||+||+.|.+++. +.++.+ ++++++|++||+.||++||+|
T Consensus 380 irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~-~~~i~~~a~AL~~ip~~La~N 458 (529)
T CHL00093 380 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDE-LIGALIVARAILAPLKRIAEN 458 (529)
T ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999876 567765 799999999999999999999
Q ss_pred cCCChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 011794 395 AGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 463 (477)
Q Consensus 395 aG~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~ 463 (477)
||+|+.+++++++..+.++|||+.+|++.||++.|||||+.||.++|+.|+|+|++|||||++|..+|+
T Consensus 459 aG~d~~~v~~~l~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 459 AGKNGSVIIEKVQEQDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred cCCCHHHHHHHHHccCCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999987778999999999999999999999999999999999999999999999998764
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.4e-79 Score=649.98 Aligned_cols=407 Identities=22% Similarity=0.287 Sum_probs=364.1
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHh-ccccCC--CHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRD 77 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~~~--~~~ 77 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|++ +++|++ +.+
T Consensus 59 ~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 138 (527)
T cd03335 59 VEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKE 138 (527)
T ss_pred ccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999996 899987 788
Q ss_pred HHHHHHHHhcC------CchhHHHHHHHHHHHhCC---CCc-------c--cccCCCccccceEEEEeeEEcccccCCCC
Q 011794 78 DIKAVATISAG------NDDLIGTMIADAIDKVGP---DGV-------L--SIESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 78 ~l~~va~ts~~------~~~~~a~lv~~av~~v~~---~~~-------I--~i~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
.|.++|+|+++ +.+.|++++++|+..++. +|. | ....|+++.|| ++++|++|+++|.+|
T Consensus 139 ~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-- 215 (527)
T cd03335 139 SLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-- 215 (527)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC--
Confidence 89999999987 248999999999999852 232 2 24689999998 999999999999986
Q ss_pred ccCccccchhccceeEEEeccccCC-------------HHh-----------HHHHHHHHHhcCCCEEEEeccccHHHHH
Q 011794 140 VTNPEKLIVEFENARVLVTDQKISA-------------IKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALA 195 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~i~~-------------~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~ 195 (477)
+|++.++||+|++++++++. +++ +.++++++++.|+||||++++|++.+++
T Consensus 216 -----~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~ 290 (527)
T cd03335 216 -----GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLK 290 (527)
T ss_pred -----CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHH
Confidence 47789999999999998753 222 3467888999999999999999999999
Q ss_pred HHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCC-cccCCCccCCccceEEE---EecccEEEEeCC
Q 011794 196 TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGL-LIENTSVEQLGTARKVT---IRKDSTTIIADA 271 (477)
Q Consensus 196 ~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~-~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~ 271 (477)
+|.++++ +++ +++++++|+|||++|||+++++..++ ..+++++.+||+|+.|+ ++++++++|++|
T Consensus 291 ~L~~~~I------~~v-----~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~ 359 (527)
T cd03335 291 YFVEAGA------MAV-----RRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGT 359 (527)
T ss_pred HHHHCCc------EEE-----EeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcC
Confidence 9999864 554 56789999999999999999943222 12344556899999999 678899999988
Q ss_pred CChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCC
Q 011794 272 ASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGG 350 (477)
Q Consensus 272 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGG 350 (477)
++ ++.+||+|||+|+.+++|++|+++||++++++++++| +||||
T Consensus 360 ~~-----------------------------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGG 404 (527)
T cd03335 360 KK-----------------------------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGG 404 (527)
T ss_pred CC-----------------------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCC
Confidence 75 3689999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc------------CCceeEEcC
Q 011794 351 GAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAM 418 (477)
Q Consensus 351 Ga~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~------------~~~~G~d~~ 418 (477)
|++||+|+.+|++++++..+.+ ++++++|++||+.||++|++|||+|+.+++.+|++. ++++|+|+.
T Consensus 405 Ga~e~~ls~~L~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~ 483 (527)
T cd03335 405 GAVETALSIYLENFATTLGSRE-QLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLI 483 (527)
T ss_pred CHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECC
Confidence 9999999999999988777765 799999999999999999999999999999999872 347899999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 011794 419 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 462 (477)
Q Consensus 419 ~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~ 462 (477)
+|++.||++.|||||+.+|.++++.|+|+|++|||||++|..+|
T Consensus 484 ~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 484 NGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred CCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999999999999999999999999999999999998765
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.1e-78 Score=647.60 Aligned_cols=399 Identities=26% Similarity=0.412 Sum_probs=365.4
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.
T Consensus 67 ~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~ 146 (519)
T TIGR02339 67 IEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDL 146 (519)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999986 4678
Q ss_pred HHHHHHHhcCCc-------hhHHHHHHHHHHHhCC---CCc-------ccc--cCCCccccceEEEEeeEEcccccCCCC
Q 011794 79 IKAVATISAGND-------DLIGTMIADAIDKVGP---DGV-------LSI--ESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 79 l~~va~ts~~~~-------~~~a~lv~~av~~v~~---~~~-------I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
|.++|+|+++++ +.|++++++|+.++++ +|. |++ ++|+++.|| ++++|++|+++|.+|
T Consensus 147 L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-- 223 (519)
T TIGR02339 147 LKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-- 223 (519)
T ss_pred HHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC--
Confidence 999999999754 8899999999999975 453 233 689999999 999999999999987
Q ss_pred ccCccccchhccceeEEEeccc-------------cCCHHhHHHHHH-----------HHHhcCCCEEEEeccccHHHHH
Q 011794 140 VTNPEKLIVEFENARVLVTDQK-------------ISAIKDIIPLLE-----------KTTQLRAPLLIIAEDVTGEALA 195 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~-------------i~~~~~l~~~l~-----------~i~~~~~~lvi~~~~i~~~al~ 195 (477)
+|++.++||+|++++++ +++++++.++++ ++++.|+||||++++|++.+++
T Consensus 224 -----~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~ 298 (519)
T TIGR02339 224 -----GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQH 298 (519)
T ss_pred -----CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHH
Confidence 37788999999999998 567777666554 8999999999999999999999
Q ss_pred HHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe---cccEEEEeCCC
Q 011794 196 TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAA 272 (477)
Q Consensus 196 ~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~~~~ 272 (477)
+|.++++ ++| +++++++|+|||++|||++++ ++++++++.||+|+.|++. ++++++|++|+
T Consensus 299 ~L~~~gI------~~v-----~~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~ 362 (519)
T TIGR02339 299 YLAKAGI------LAV-----RRVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCK 362 (519)
T ss_pred HHHHCCC------EEE-----ecCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCC
Confidence 9987764 544 467799999999999999999 7888888899999999874 47899999886
Q ss_pred ChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCc
Q 011794 273 SKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGG 351 (477)
Q Consensus 273 ~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGG 351 (477)
++ ..+||+|||+|+.+++|.+|+++||++++++++++| +|||||
T Consensus 363 ~~-----------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG 407 (519)
T TIGR02339 363 NP-----------------------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGG 407 (519)
T ss_pred CC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCC
Confidence 53 478999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCccccccc
Q 011794 352 AALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQ 427 (477)
Q Consensus 352 a~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~ 427 (477)
++||+++++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++
T Consensus 408 a~e~~ls~~l~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~ 486 (519)
T TIGR02339 408 AVEIELALRLRSYARKIGGRE-QLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLE 486 (519)
T ss_pred HHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhh
Confidence 999999999999988777765 79999999999999999999999999999999984 3567999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 011794 428 AGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 459 (477)
Q Consensus 428 ~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~ 459 (477)
.|||||+.+|+++++.|+|+|++|||||++|+
T Consensus 487 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 487 LGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred ccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99999999999999999999999999999985
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-78 Score=645.45 Aligned_cols=404 Identities=22% Similarity=0.314 Sum_probs=365.2
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccC---CCHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI---EGRD 77 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~---~~~~ 77 (477)
++||+++|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++ .+.+
T Consensus 67 i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (531)
T TIGR02347 67 IQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRE 146 (531)
T ss_pred ccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999764 4788
Q ss_pred HHHHHHHHhcCC------chhHHHHHHHHHHHhCCCCc-c-----cc--cCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 78 DIKAVATISAGN------DDLIGTMIADAIDKVGPDGV-L-----SI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 78 ~l~~va~ts~~~------~~~~a~lv~~av~~v~~~~~-I-----~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
.|.++|+|++++ ++.|++++++|+..+++++. | ++ ..|++..|| ++++|++|+++|.+|+
T Consensus 147 ~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~----- 220 (531)
T TIGR02347 147 LLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD----- 220 (531)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-----
Confidence 899999999864 78999999999999987653 3 32 578999998 9999999999999986
Q ss_pred cccchhccceeEEEeccccCCH-------------Hh-----------HHHHHHHHHhcC-------CC---EEEEeccc
Q 011794 144 EKLIVEFENARVLVTDQKISAI-------------KD-----------IIPLLEKTTQLR-------AP---LLIIAEDV 189 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i~~~-------------~~-----------l~~~l~~i~~~~-------~~---lvi~~~~i 189 (477)
|+++++||+|+++|++++.. ++ +..+++++++.+ ++ ||+++++|
T Consensus 221 --~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I 298 (531)
T TIGR02347 221 --MPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI 298 (531)
T ss_pred --CceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCc
Confidence 46788999999999986532 22 345677887765 15 99999999
Q ss_pred cHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEE---EEecccEE
Q 011794 190 TGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTT 266 (477)
Q Consensus 190 ~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v---~~~~~~~~ 266 (477)
++.++++|.++++ +++ +++++++|+|||++|||++++ +++++++++||+|+.| ++++++++
T Consensus 299 ~~~a~~~L~~~~I------~~i-----~rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~ 362 (531)
T TIGR02347 299 DPPSLDLLAKEGI------MAL-----RRAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYT 362 (531)
T ss_pred cHHHHHHHHHCCc------eEE-----ccCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEE
Confidence 9999999999874 655 466789999999999999999 8999999999999999 56788999
Q ss_pred EEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-
Q 011794 267 IIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG- 345 (477)
Q Consensus 267 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g- 345 (477)
+|++|+++ +++||+|||+|+.+++|++|+++||++++++++++|
T Consensus 363 ~i~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~ 407 (531)
T TIGR02347 363 FIEEVKNP-----------------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKC 407 (531)
T ss_pred EEEcCCCC-----------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99998764 579999999999999999999999999999999999
Q ss_pred CcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCc
Q 011794 346 IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDK 421 (477)
Q Consensus 346 vvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~ 421 (477)
+|||||++|++|+.+|++++.+.++.+ ++++++|++||+.||++|++|||+|+.+++++|++. +.++|+|+.+|+
T Consensus 408 vvpGGGa~E~~ls~~l~~~~~~~~~~~-~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~ 486 (531)
T TIGR02347 408 VVPGAGAFEIAAYCHLKEEKKSVKGKA-KLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGE 486 (531)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCC
Confidence 999999999999999999987777765 799999999999999999999999999999999873 357899999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q 011794 422 YENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 464 (477)
Q Consensus 422 i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~ 464 (477)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|+.+|+.
T Consensus 487 ~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 487 PIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred ccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 9999999999999999999999999999999999999987764
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-78 Score=646.40 Aligned_cols=401 Identities=24% Similarity=0.389 Sum_probs=367.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+|+|+++|++++.+++++|+||..|++||+.|.+.+++.|++++.+++ +.+.
T Consensus 66 ~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~ 145 (517)
T cd03343 66 IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDT 145 (517)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999986 7889
Q ss_pred HHHHHHHhcCCc------hhHHHHHHHHHHHhCCCCc---------ccc--cCCCccccceEEEEeeEEcccccCCCCcc
Q 011794 79 IKAVATISAGND------DLIGTMIADAIDKVGPDGV---------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVT 141 (477)
Q Consensus 79 l~~va~ts~~~~------~~~a~lv~~av~~v~~~~~---------I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~ 141 (477)
+.++|+++++++ +.|++++++|+.++++++. |++ ++|++++|| ++++|++|+++|.+|+
T Consensus 146 l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~--- 221 (517)
T cd03343 146 LRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG--- 221 (517)
T ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC---
Confidence 999999999864 8999999999999976532 555 789999999 9999999999999986
Q ss_pred CccccchhccceeEEEeccc-------------cCCHHhHHH-----------HHHHHHhcCCCEEEEeccccHHHHHHH
Q 011794 142 NPEKLIVEFENARVLVTDQK-------------ISAIKDIIP-----------LLEKTTQLRAPLLIIAEDVTGEALATL 197 (477)
Q Consensus 142 ~~~~~~~~~~~~~Ill~~~~-------------i~~~~~l~~-----------~l~~i~~~~~~lvi~~~~i~~~al~~l 197 (477)
|++.++||+|++++++ +++++++.+ +++++++.|+||||++++|++.++++|
T Consensus 222 ----m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l 297 (517)
T cd03343 222 ----MPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYL 297 (517)
T ss_pred ----CccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHH
Confidence 4578899999999998 466666654 456899999999999999999999999
Q ss_pred HHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe---cccEEEEeCCCCh
Q 011794 198 VVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASK 274 (477)
Q Consensus 198 ~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~~~~~~ 274 (477)
.++++ ++| +++++++|+|||++|||++++ ++++++++.||+|+.|++. +++|++|++|+++
T Consensus 298 ~~~gI------~~v-----~~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~ 361 (517)
T cd03343 298 AKAGI------LAV-----RRVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP 361 (517)
T ss_pred hHCCc------EEE-----EeCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC
Confidence 88764 554 467799999999999999999 7899998899999999864 7789999988763
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHH
Q 011794 275 DEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAA 353 (477)
Q Consensus 275 ~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~ 353 (477)
..+||+|||+|+.+++|++|+++||++++++++++| +|||||++
T Consensus 362 -----------------------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~ 406 (517)
T cd03343 362 -----------------------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406 (517)
T ss_pred -----------------------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHH
Confidence 468999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCC
Q 011794 354 LVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAG 429 (477)
Q Consensus 354 e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~g 429 (477)
||+++.+|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++.+|++ ++.++|+|+.+|++.||++.|
T Consensus 407 e~~ls~~L~~~~~~~~~~~-~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~g 485 (517)
T cd03343 407 EIELAKRLREYARSVGGRE-QLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKG 485 (517)
T ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcC
Confidence 9999999999887777765 79999999999999999999999999999999984 356799999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 011794 430 VIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 461 (477)
Q Consensus 430 I~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~ 461 (477)
||||+.+|+++++.|+|+|++|||||++|+.+
T Consensus 486 I~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 486 VIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 99999999999999999999999999999753
No 16
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-79 Score=611.83 Aligned_cols=462 Identities=51% Similarity=0.788 Sum_probs=449.1
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIK 80 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~ 80 (477)
++|.+|+++++++.+.++..||||||+++|++++..++.+-+.+|.+|.+|.+|+..+.+.+++.|+++++|+++++++.
T Consensus 79 ~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIa 158 (550)
T KOG0356|consen 79 YENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIA 158 (550)
T ss_pred hhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEEEecc
Q 011794 81 AVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 160 (477)
Q Consensus 81 ~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~ 160 (477)
+||.+|.|+|..+++++.+|+.+++++|.|.++.|.++.|++++++||.|++||.+|||+++++.+..+|++|++++.+.
T Consensus 159 qVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k 238 (550)
T KOG0356|consen 159 QVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK 238 (550)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCC
Q 011794 161 KISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240 (477)
Q Consensus 161 ~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~ 240 (477)
+|++++++.|.++...+...||+|++++|+.++|.+|+.|+++++++|+|||+|+||+-++..+.||+.+||++++.++.
T Consensus 239 ki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~ 318 (550)
T KOG0356|consen 239 KISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEEL 318 (550)
T ss_pred hhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-CcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCC
Q 011794 241 G-LLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAA 319 (477)
Q Consensus 241 ~-~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~ 319 (477)
+ ++++..+.++||.|+++.++.++++++.+..++.+++.||++++..++.+.+.|+++++++|+++|++++++|.++|.
T Consensus 319 ~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~ 398 (550)
T KOG0356|consen 319 STLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGH 398 (550)
T ss_pred hhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCc
Confidence 6 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 011794 320 TETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEG 399 (477)
Q Consensus 320 t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~ 399 (477)
|+.+++|++.+++||++++++++++|+|||||+++++|+..|..... ..+.+++.+++++.+||..|..+|++|||.|+
T Consensus 399 se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg 477 (550)
T KOG0356|consen 399 SEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDG 477 (550)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCch
Confidence 99999999999999999999999999999999999999999998775 44556678899999999999999999999999
Q ss_pred HHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q 011794 400 EVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 465 (477)
Q Consensus 400 ~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~ 465 (477)
..++.|++. ..+|||..+|++.||.+.||+||+.|.+.++..|..+|+++++++.+|...|+++
T Consensus 478 ~~vv~Kv~~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 478 SVVVEKVLN--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHHHHHh--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999999994 4999999999999999999999999999999999999999999999999999988
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-79 Score=642.52 Aligned_cols=395 Identities=22% Similarity=0.308 Sum_probs=361.0
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC---CHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE---GRD 77 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~---~~~ 77 (477)
++||+++|+.++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+++ +.+
T Consensus 63 ~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~ 142 (484)
T cd03342 63 IQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRE 142 (484)
T ss_pred CcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999997 888
Q ss_pred HHHHHHHHhcCCc------hhHHHHHHHHHHHhCCCC-c-------ccccCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 78 DIKAVATISAGND------DLIGTMIADAIDKVGPDG-V-------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 78 ~l~~va~ts~~~~------~~~a~lv~~av~~v~~~~-~-------I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
.+.++|++|++++ +.|++++++|+..+++++ . |...+|+++.|| ++++|++|+++|.+|+
T Consensus 143 ~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~----- 216 (484)
T cd03342 143 LLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD----- 216 (484)
T ss_pred HHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-----
Confidence 9999999999864 899999999999998865 2 223589999998 9999999999999986
Q ss_pred cccchhccceeEEEeccccCCHHh-HHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhH
Q 011794 144 EKLIVEFENARVLVTDQKISAIKD-IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKA 222 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i~~~~~-l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~ 222 (477)
|+++++||+|+++|++++..+. +... ...+|||++++|++.++++|.+|+ |+||+ +++++
T Consensus 217 --m~~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~ 277 (484)
T cd03342 217 --MPKRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRR 277 (484)
T ss_pred --CCccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHH
Confidence 4678899999999999987654 2211 114699999999999999999996 57765 46789
Q ss_pred HHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHH
Q 011794 223 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEK 299 (477)
Q Consensus 223 ~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 299 (477)
+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|++|+++
T Consensus 278 ~l~~ia~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~------------------------- 327 (484)
T cd03342 278 NMERLTLACGGVAMN-----SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP------------------------- 327 (484)
T ss_pred HHHHHHHHhCCEEec-----ccccCChhhCcccceEEEEEECCeEEEEEECCCCC-------------------------
Confidence 999999999999999 89999999999999994 578899999998763
Q ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhhccCCchhHHHHHH
Q 011794 300 LAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGAD 378 (477)
Q Consensus 300 l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~ 378 (477)
+.+||+|||+|+.+++|++|+++||++++++++++| +||||||+||+++.+|++++.+..+.+ +++++
T Consensus 328 ----------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~-~~~i~ 396 (484)
T cd03342 328 ----------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKA-KLGVQ 396 (484)
T ss_pred ----------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHH-HHHHH
Confidence 579999999999999999999999999999999999 999999999999999999988777765 79999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhch
Q 011794 379 IVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTT 454 (477)
Q Consensus 379 ~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~i 454 (477)
+|++||+.||++|++|||+|+.+++++|++. +.++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++||||
T Consensus 397 ~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~I 476 (484)
T cd03342 397 AFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLV 476 (484)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999863 567999999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 011794 455 QAIVVEK 461 (477)
Q Consensus 455 D~iI~~~ 461 (477)
|++|+.+
T Consensus 477 D~ii~~~ 483 (484)
T cd03342 477 DEIIRAG 483 (484)
T ss_pred hHhhhcC
Confidence 9999764
No 18
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-78 Score=644.59 Aligned_cols=409 Identities=21% Similarity=0.290 Sum_probs=365.2
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhc-cccCC--CHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKR-ARPIE--GRD 77 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~~~--~~~ 77 (477)
++||.|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++ ++|++ +.+
T Consensus 63 ~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 142 (536)
T TIGR02340 63 VEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGRE 142 (536)
T ss_pred ccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999984 88987 788
Q ss_pred HHHHHHHHhcC------CchhHHHHHHHHHHHhC---CCCc-------cc--ccCCCccccceEEEEeeEEcccccCCCC
Q 011794 78 DIKAVATISAG------NDDLIGTMIADAIDKVG---PDGV-------LS--IESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 78 ~l~~va~ts~~------~~~~~a~lv~~av~~v~---~~~~-------I~--i~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
++.++|+|+++ +++.|++++++|+..++ .+|. |+ .++|+++.|+ ++++|++|+++|.+|
T Consensus 143 ~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-- 219 (536)
T TIGR02340 143 ALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-- 219 (536)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC--
Confidence 89999999987 57899999999999986 2343 22 2689999888 999999999999886
Q ss_pred ccCccccchhccceeEEEeccccCCHH-------------h-----------HHHHHHHHHhcCCCEEEEeccccHHHHH
Q 011794 140 VTNPEKLIVEFENARVLVTDQKISAIK-------------D-----------IIPLLEKTTQLRAPLLIIAEDVTGEALA 195 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~i~~~~-------------~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~ 195 (477)
+|+++++||+|++++++++..+ + +.+.++++++.|++||+++++|++.+++
T Consensus 220 -----~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~ 294 (536)
T TIGR02340 220 -----QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLK 294 (536)
T ss_pred -----CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHH
Confidence 4788999999999999874332 1 3366788899999999999999999999
Q ss_pred HHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCC-cccCCCccCCccceEEE---EecccEEEEeCC
Q 011794 196 TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGL-LIENTSVEQLGTARKVT---IRKDSTTIIADA 271 (477)
Q Consensus 196 ~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~-~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~ 271 (477)
+|.++++ +++ +++++++|+|||++|||+++++..++ ..++++.++||+|+.|+ +++++|++|++|
T Consensus 295 ~L~k~~I------~~i-----~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 363 (536)
T TIGR02340 295 YFVEAGA------MGV-----RRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGT 363 (536)
T ss_pred HHHHCCc------EEE-----ecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcC
Confidence 9999874 554 56779999999999999999954332 22345667799999999 678899999988
Q ss_pred CChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCC
Q 011794 272 ASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGG 350 (477)
Q Consensus 272 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGG 350 (477)
+++ +++||+|||+|+.+++|++|+++||++++++++++| +||||
T Consensus 364 ~~~-----------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGG 408 (536)
T TIGR02340 364 KGR-----------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGG 408 (536)
T ss_pred CCC-----------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECC
Confidence 653 479999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc------------CCceeEEcC
Q 011794 351 GAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAM 418 (477)
Q Consensus 351 Ga~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~------------~~~~G~d~~ 418 (477)
|++||+++++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++.+|++. +.++|+|+.
T Consensus 409 Ga~e~~ls~~l~~~~~~~~~~~-~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~ 487 (536)
T TIGR02340 409 GAVETALSIYLENFATTLGSRE-QLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLS 487 (536)
T ss_pred CHHHHHHHHHHHHHhhhCCChh-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEcc
Confidence 9999999999999877777765 799999999999999999999999999999999872 347999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q 011794 419 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 464 (477)
Q Consensus 419 ~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~ 464 (477)
+|++.||++.|||||+.+|.++++.|+|+|++|||||++|+.+|+.
T Consensus 488 ~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 488 NGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred CCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 9999999999999999999999999999999999999999887643
No 19
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.5e-78 Score=643.64 Aligned_cols=403 Identities=22% Similarity=0.290 Sum_probs=366.2
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.
T Consensus 67 ~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (525)
T TIGR02344 67 VAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAA 146 (525)
T ss_pred CCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987 6778
Q ss_pred HHHHHHHhcCC------chhHHHHHHHHHHHhCCCC-----------cccc--cCCCccccceEEEEeeEEcccccCCCC
Q 011794 79 IKAVATISAGN------DDLIGTMIADAIDKVGPDG-----------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 79 l~~va~ts~~~------~~~~a~lv~~av~~v~~~~-----------~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
|.++|+|+++. ++.|++++++|+..+++++ +|++ .+|+++.|| ++++|++|++++.++
T Consensus 147 l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-- 223 (525)
T TIGR02344 147 MLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-- 223 (525)
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC--
Confidence 99999988754 5899999999999998653 1333 479999998 999999999997775
Q ss_pred ccCccccchhccceeEEEeccccCC-------------HHhHHHH-----------HHHHHhcCCCEEEEeccccHHHHH
Q 011794 140 VTNPEKLIVEFENARVLVTDQKISA-------------IKDIIPL-----------LEKTTQLRAPLLIIAEDVTGEALA 195 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~i~~-------------~~~l~~~-----------l~~i~~~~~~lvi~~~~i~~~al~ 195 (477)
+|+..++||+|++++++++. ++++.++ ++++.+.|++|||++++|++.+++
T Consensus 224 -----~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~ 298 (525)
T TIGR02344 224 -----KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQH 298 (525)
T ss_pred -----CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHH
Confidence 47889999999999998754 3555444 558889999999999999999999
Q ss_pred HHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCcc-ceEEEE---ecccEEEEeCC
Q 011794 196 TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADA 271 (477)
Q Consensus 196 ~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~~~ 271 (477)
+|.+++ |+| ++++++++|+|||++|||++++ ++++++++.+|+ |+.|++ +++++++|++|
T Consensus 299 ~l~~~~------I~a-----v~~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~ 362 (525)
T TIGR02344 299 YLLKAN------ISA-----IRRVRKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTEC 362 (525)
T ss_pred HHhHCC------ceE-----EecCCHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcC
Confidence 999876 465 4678899999999999999999 789999899999 998886 56789999988
Q ss_pred CChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCC
Q 011794 272 ASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGG 350 (477)
Q Consensus 272 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGG 350 (477)
+++ ..+||+|||+|+.+++|++|+++||+++++++++++ +||||
T Consensus 363 ~~~-----------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGG 407 (525)
T TIGR02344 363 KDP-----------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGG 407 (525)
T ss_pred CCC-----------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 753 479999999999999999999999999999999997 99999
Q ss_pred cHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc-----CCceeEEcCCCccccc
Q 011794 351 GAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS-----EWTTGYNAMTDKYENM 425 (477)
Q Consensus 351 Ga~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~-----~~~~G~d~~~g~i~d~ 425 (477)
|++||+||.+|++++.+..+.+ ++++++|++||+.||++||+|||+|+.+++++|++. +.++|+|+.+|++.||
T Consensus 408 Ga~e~~ls~~l~~~~~~~~~~~-~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~ 486 (525)
T TIGR02344 408 GATEMAVSVYLAKKASKLEGVQ-QWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDM 486 (525)
T ss_pred CHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccc
Confidence 9999999999999988778875 799999999999999999999999999999999872 5679999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 011794 426 LQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 463 (477)
Q Consensus 426 ~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~ 463 (477)
++.|||||+.+|+++++.|+|+|++|||||++|...|+
T Consensus 487 ~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 487 KEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred hhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 99999999999999999999999999999999988774
No 20
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-78 Score=642.44 Aligned_cols=405 Identities=20% Similarity=0.299 Sum_probs=368.7
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCC-----
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG----- 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~----- 75 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++++++
T Consensus 67 ~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~ 146 (522)
T cd03340 67 IVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEE 146 (522)
T ss_pred ccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -HHHHHHHHHHhcC------CchhHHHHHHHHHHHhCCCC---ccc--ccCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 76 -RDDIKAVATISAG------NDDLIGTMIADAIDKVGPDG---VLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 76 -~~~l~~va~ts~~------~~~~~a~lv~~av~~v~~~~---~I~--i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
.+.|.++|+|+++ ++++|++++++|+..+++++ .|+ ...|+++.|| ++++|++|+++|.+|+|.
T Consensus 147 ~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~--- 222 (522)
T cd03340 147 QRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE--- 222 (522)
T ss_pred cHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc---
Confidence 5679999999986 47999999999999998765 333 3589999999 899999999999999874
Q ss_pred cccchhccceeEEEecccc-------------CCHHh-----------HHHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 144 EKLIVEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i-------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
+|++.++||+|+++++++ +++++ +.++++++++.|+++|+++++|++.++++|.+
T Consensus 223 -~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~ 301 (522)
T cd03340 223 -QQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD 301 (522)
T ss_pred -cCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH
Confidence 466789999999999984 34433 45678889999999999999999999999999
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~ 276 (477)
+++ +++ +++++++|+|||++|||++++ ++++++++.||+|+.|+ ++++++++|.+|..+
T Consensus 302 ~~I------~~~-----~~v~~~~l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-- 363 (522)
T cd03340 302 RDI------FCA-----GRVPEEDLKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-- 363 (522)
T ss_pred CCc------EEE-----EeCCHHHHHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--
Confidence 875 443 566789999999999999999 78999999999999998 567789999998653
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
+.+||++||+|+..++|.+|+++||++++++++++| +|||||++||
T Consensus 364 ---------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~ 410 (522)
T cd03340 364 ---------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEM 410 (522)
T ss_pred ---------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHH
Confidence 579999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----C-CceeEEcCCCcccccccCCc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----E-WTTGYNAMTDKYENMLQAGV 430 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~-~~~G~d~~~g~i~d~~~~gI 430 (477)
+++.+|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++. + .++|+|+.+|++.||++.||
T Consensus 411 ~ls~~l~~~~~~~~~~~-~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV 489 (522)
T cd03340 411 ELSKYLRDYSRTIAGKQ-QLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFV 489 (522)
T ss_pred HHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCc
Confidence 99999999987777765 799999999999999999999999999999999873 3 67999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 011794 431 IDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 462 (477)
Q Consensus 431 ~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~ 462 (477)
|||+.+|+++++.|+|+|++|||||++|+.++
T Consensus 490 ~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 490 WEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred eEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 99999999999999999999999999998753
No 21
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-77 Score=634.43 Aligned_cols=402 Identities=20% Similarity=0.309 Sum_probs=363.4
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC-----C
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----G 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~-----~ 75 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +
T Consensus 66 ~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 145 (517)
T cd03336 66 VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAF 145 (517)
T ss_pred CcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999884 3
Q ss_pred HHHHHHHHHHhcCC------chhHHHHHHHHHHHhCCC---Ccc--cccCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 76 RDDIKAVATISAGN------DDLIGTMIADAIDKVGPD---GVL--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 76 ~~~l~~va~ts~~~------~~~~a~lv~~av~~v~~~---~~I--~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
.+.|.++|+|+++. ++.|++++++|+..++.. ..| ...+|++++|| ++++|+++++++.++
T Consensus 146 ~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~------- 217 (517)
T cd03336 146 REDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN------- 217 (517)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC-------
Confidence 56899999988753 589999999999998632 123 34689999999 899999999886542
Q ss_pred ccchhccceeEEEeccccC--------------CHHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 145 KLIVEFENARVLVTDQKIS--------------AIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~i~--------------~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
|++.++||+|+++|++++ +++++ .+++++|++.|++++++++.|++.++++|.+
T Consensus 218 -~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~ 296 (517)
T cd03336 218 -QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFAD 296 (517)
T ss_pred -CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHH
Confidence 578899999999999764 44444 3357889999999999999999999999999
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~~ 276 (477)
++ |++|+++ ++++|+|||++|||++++ ++++++++.||+|+.|+. +++++++|.+|++
T Consensus 297 ~~------I~av~~v-----~~~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~--- 357 (517)
T cd03336 297 AG------IMAIEHA-----DFDGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA--- 357 (517)
T ss_pred CC------cEEEecC-----CHHHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC---
Confidence 87 4777655 467899999999999999 889999889999999974 5778999998865
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+
T Consensus 358 --------------------------------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~ 405 (517)
T cd03336 358 --------------------------------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEM 405 (517)
T ss_pred --------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHH
Confidence 3689999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
+++++|++++++..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||
T Consensus 406 ~ls~~l~~~~~~~~~~~-~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~ 484 (517)
T cd03336 406 LMAKAVEELAKKTPGKK-SLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGIT 484 (517)
T ss_pred HHHHHHHHHhhhCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCce
Confidence 99999999988777765 79999999999999999999999999999999987 46789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 463 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~ 463 (477)
||+.+|+++++.|+|+|++|||||++|+.+|+
T Consensus 485 dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 485 ESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 99999999999999999999999999998774
No 22
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-77 Score=636.53 Aligned_cols=402 Identities=21% Similarity=0.297 Sum_probs=364.4
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++++ +.+.
T Consensus 59 ~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~ 138 (515)
T cd03338 59 VLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRES 138 (515)
T ss_pred CcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999986 7889
Q ss_pred HHHHHHHhcC------CchhHHHHHHHHHHHhCCCCc----------ccccCCCccccceEEEEeeEEcccccCCCCccC
Q 011794 79 IKAVATISAG------NDDLIGTMIADAIDKVGPDGV----------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTN 142 (477)
Q Consensus 79 l~~va~ts~~------~~~~~a~lv~~av~~v~~~~~----------I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~ 142 (477)
|.++|+||++ +++.+++++++|+.++++++. |.++.|++++|| ++++|++|+++|.+|++
T Consensus 139 l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~--- 214 (515)
T cd03338 139 LIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG--- 214 (515)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC---
Confidence 9999999998 568899999999999987653 445689999999 99999999999999753
Q ss_pred ccccchhccceeEEEeccccC-------------CH-----------HhHHHHHHHHHhcCCCEEEEeccc-----cHHH
Q 011794 143 PEKLIVEFENARVLVTDQKIS-------------AI-----------KDIIPLLEKTTQLRAPLLIIAEDV-----TGEA 193 (477)
Q Consensus 143 ~~~~~~~~~~~~Ill~~~~i~-------------~~-----------~~l~~~l~~i~~~~~~lvi~~~~i-----~~~a 193 (477)
||+.+.||++++++++++ +. +++.++++++++.|+||||++++| ++.+
T Consensus 215 ---~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~ 291 (515)
T cd03338 215 ---GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLA 291 (515)
T ss_pred ---CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHH
Confidence 367788999999888742 22 335678899999999999999998 7888
Q ss_pred HHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe---cccEEEEeC
Q 011794 194 LATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIAD 270 (477)
Q Consensus 194 l~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~~ 270 (477)
+++|.+++ |+||+ ++++++|+|||++|||++++ ++++++.+.||+|+.|++. ++++++|.+
T Consensus 292 ~~~l~~~~------I~av~-----~~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 292 LHFLAKLK------IMVVK-----DIEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred HHHHHHCC------ceEEe-----cCCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 88887654 57764 67899999999999999999 8999998999999999863 557888988
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCC
Q 011794 271 AASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPG 349 (477)
Q Consensus 271 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpG 349 (477)
|.+ +++.+||+|||+|+.+++|++|+++||++++++++++| +|||
T Consensus 356 ~~~----------------------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpG 401 (515)
T cd03338 356 VKN----------------------------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPG 401 (515)
T ss_pred cCC----------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEEC
Confidence 754 14689999999999999999999999999999999999 9999
Q ss_pred CcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCccccc
Q 011794 350 GGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENM 425 (477)
Q Consensus 350 GGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~ 425 (477)
||++|++|+++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||
T Consensus 402 GG~~e~~ls~~l~~~~~~~~~~~-~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~ 480 (515)
T cd03338 402 GGAPEIEIALQLSEWARTLTGVE-QYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNI 480 (515)
T ss_pred CCHHHHHHHHHHHHHhccCCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccch
Confidence 99999999999999887777765 79999999999999999999999999999999987 46689999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q 011794 426 LQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 460 (477)
Q Consensus 426 ~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~ 460 (477)
++.|||||+.+|+++++.|+|+|++|||||++|+.
T Consensus 481 ~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 481 LEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred hhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999999999999999999999863
No 23
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-77 Score=638.53 Aligned_cols=398 Identities=24% Similarity=0.313 Sum_probs=360.2
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC----CH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GR 76 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~----~~ 76 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++ +.
T Consensus 74 ~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 153 (526)
T cd03339 74 VDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNK 153 (526)
T ss_pred ccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999885 57
Q ss_pred HHHHHHHHHhcCC------chhHHHHHHHHHHHhCCC--C-----c--ccccCCCccccceEEEEeeEEcccccCCCCcc
Q 011794 77 DDIKAVATISAGN------DDLIGTMIADAIDKVGPD--G-----V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVT 141 (477)
Q Consensus 77 ~~l~~va~ts~~~------~~~~a~lv~~av~~v~~~--~-----~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~ 141 (477)
+.|.++|+|+++. .+.|++++++|+..+... . . |...+|++++|| ++++|++|+++|.+|+|
T Consensus 154 ~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-- 230 (526)
T cd03339 154 EPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-- 230 (526)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC--
Confidence 7899999999864 478999999999988531 1 1 333699999999 99999999999999864
Q ss_pred CccccchhccceeEEEecccc-------------CCHHh-----------HHHHHHHHHhcCCCEEEEeccccHHHHHHH
Q 011794 142 NPEKLIVEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATL 197 (477)
Q Consensus 142 ~~~~~~~~~~~~~Ill~~~~i-------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l 197 (477)
++.++||||+++++++ +++++ +.++++++++.|+||||++++|++.++++|
T Consensus 231 -----~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L 305 (526)
T cd03339 231 -----PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLL 305 (526)
T ss_pred -----CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 5677899999998753 44544 567899999999999999999999999999
Q ss_pred HHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---e--cccEEEEeCCC
Q 011794 198 VVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---R--KDSTTIIADAA 272 (477)
Q Consensus 198 ~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~--~~~~~~~~~~~ 272 (477)
.+|++ .||++ +++++|+|||++|||++++ ++++++.+.+|+|+.|+. + +++++||++|+
T Consensus 306 ~~~~I------~av~~-----v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~ 369 (526)
T cd03339 306 LQNGL------PAVRW-----VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP 369 (526)
T ss_pred HHCCC------EEEEe-----CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCC
Confidence 99885 56554 5678899999999999999 899999999999999984 2 36789999987
Q ss_pred ChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCc
Q 011794 273 SKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGG 351 (477)
Q Consensus 273 ~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGG 351 (477)
++ +.+||+|||+|+.+++|++|+++||++++++++++| +|||||
T Consensus 370 ~~-----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGG 414 (526)
T cd03339 370 NS-----------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGG 414 (526)
T ss_pred CC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCC
Confidence 53 579999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc-----cCCceeEEcCCCcccccc
Q 011794 352 AALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENML 426 (477)
Q Consensus 352 a~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~ 426 (477)
++||+++++|++++.++.+.+ ++++++|++||+.||++|++|||+|+.+++++|+. ++.++|+|+.+|++.||+
T Consensus 415 a~e~~ls~~l~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~ 493 (526)
T cd03339 415 AAEISCSLAVEKAADKCSGIE-QYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMK 493 (526)
T ss_pred HHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchh
Confidence 999999999999988777765 79999999999999999999999999999999983 355799999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHhchhhhh
Q 011794 427 QAGVIDPAKVTRCALQNAASVAGMVLTTQAIV 458 (477)
Q Consensus 427 ~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI 458 (477)
+.|||||+.+|+++++.|+|+|++|||||++|
T Consensus 494 ~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 494 EQKVFETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 99999999999999999999999999999987
No 24
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-78 Score=584.03 Aligned_cols=409 Identities=18% Similarity=0.273 Sum_probs=377.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--C---
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--G--- 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~--- 75 (477)
+-||+|+.|+++|++||.++||||||||+|++++|+++..+++.|+||..|+++|+.|...+++.++++++.++ +
T Consensus 71 ivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~ 150 (543)
T KOG0361|consen 71 IVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTE 150 (543)
T ss_pred hcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999886 2
Q ss_pred -HHHHHHHHHHhcC------CchhHHHHHHHHHHHhCCCC---c--ccccCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 76 -RDDIKAVATISAG------NDDLIGTMIADAIDKVGPDG---V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 76 -~~~l~~va~ts~~------~~~~~a~lv~~av~~v~~~~---~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
++.|.++|.|+++ ..++|++++++|+..+..+. . |++++||+++|| .+++|+.|.+.|.+.+|
T Consensus 151 ~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf---- 225 (543)
T KOG0361|consen 151 LRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF---- 225 (543)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----
Confidence 4568899999875 36999999999999987532 1 677899999999 79999999999999888
Q ss_pred cccchhccceeEEEecccc-------------CCHHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 144 EKLIVEFENARVLVTDQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i-------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
+.+|+++.||||+++|.++ .+++++ .+.++++..+|.|+|++.-.|.|.|.+||+.
T Consensus 226 EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAd 305 (543)
T KOG0361|consen 226 EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFAD 305 (543)
T ss_pred hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhc
Confidence 5678999999999999863 344443 4678899999999999999999999999999
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~ 276 (477)
+++ .+.|+++++||+|+..+||+++++ +..++.+..||.|..|+ +++++|.+|+||+.
T Consensus 306 rdi-----------FCAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~--- 366 (543)
T KOG0361|consen 306 RDI-----------FCAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK--- 366 (543)
T ss_pred cCc-----------eecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc---
Confidence 986 456899999999999999999999 78999999999999997 57999999999986
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
++.||+++||+.++.++|.+|++|||++++|.++++. +|+|||++||
T Consensus 367 --------------------------------aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEM 414 (543)
T KOG0361|consen 367 --------------------------------AKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEM 414 (543)
T ss_pred --------------------------------cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeee
Confidence 3689999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
++|+.|++++.++.++. |+.+.+|++|||.||++||+|+|+|..+++++||. ++.|+|+|..++.+.|+++.+||
T Consensus 415 ElSk~lRd~S~ti~gK~-q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~Vw 493 (543)
T KOG0361|consen 415 ELSKYLRDYSRTIAGKQ-QLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVW 493 (543)
T ss_pred hHHHHHHHhhcccCcHH-HHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhcc
Confidence 99999999999999985 78999999999999999999999999999999998 47899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKT 466 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~ 466 (477)
||..||++++..|+|+|++||.+|+.|++++...+
T Consensus 494 EP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~ 528 (543)
T KOG0361|consen 494 EPSIVKINAITAATEAACLILSVDETIKNPKSQSA 528 (543)
T ss_pred ChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCC
Confidence 99999999999999999999999999998875543
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-77 Score=633.91 Aligned_cols=403 Identities=20% Similarity=0.310 Sum_probs=361.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.
T Consensus 60 ~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 139 (517)
T TIGR02342 60 VIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREI 139 (517)
T ss_pred ccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987 7888
Q ss_pred HHHHHHHhcCC------chhHHHHHHHHHHHhCC---CCc-----ccc--cCCCccccceEEEEeeEEcccccCCCCccC
Q 011794 79 IKAVATISAGN------DDLIGTMIADAIDKVGP---DGV-----LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTN 142 (477)
Q Consensus 79 l~~va~ts~~~------~~~~a~lv~~av~~v~~---~~~-----I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~ 142 (477)
|.++|+|++++ .+.|++++++|+..++. ++. |++ ..|++..|| ++++|++|+++|.++
T Consensus 140 l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~----- 213 (517)
T TIGR02342 140 LIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS----- 213 (517)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc-----
Confidence 99999999863 46789999999999976 232 222 489999998 999999999999884
Q ss_pred ccccchhccceeEEEeccccC-------------CH-----------HhHHHHHHHHHhcCCCEEEEeccc-----cHHH
Q 011794 143 PEKLIVEFENARVLVTDQKIS-------------AI-----------KDIIPLLEKTTQLRAPLLIIAEDV-----TGEA 193 (477)
Q Consensus 143 ~~~~~~~~~~~~Ill~~~~i~-------------~~-----------~~l~~~l~~i~~~~~~lvi~~~~i-----~~~a 193 (477)
.+||+.++||+|++++++++ ++ +++.++++++.+.|+||||++++| ++.+
T Consensus 214 -~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~ 292 (517)
T TIGR02342 214 -AGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLA 292 (517)
T ss_pred -CCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHH
Confidence 24778899999999998753 22 235678899999999999999999 7788
Q ss_pred HHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE-E--ecccEEEEeC
Q 011794 194 LATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT-I--RKDSTTIIAD 270 (477)
Q Consensus 194 l~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~-~--~~~~~~~~~~ 270 (477)
+++|.+++ |+||+ ++++++|+|||++|||++++ +++++++.+||+|+.|+ + ++..+++|.+
T Consensus 293 ~~~l~~~~------I~av~-----~v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~ 356 (517)
T TIGR02342 293 LHFLAKMK------IMVVK-----DIEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITG 356 (517)
T ss_pred HHHHhhCC------ceEEe-----cCCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEc
Confidence 88887755 57764 67799999999999999999 78999989999999998 3 3556778888
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCC
Q 011794 271 AASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPG 349 (477)
Q Consensus 271 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpG 349 (477)
|+++ ++.+||+|||+|+.+++|++|+++||+++++++++++ +|||
T Consensus 357 ~~~~----------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpG 402 (517)
T TIGR02342 357 IQNA----------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPG 402 (517)
T ss_pred cCCC----------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEEC
Confidence 7652 4689999999999999999999999999999999986 9999
Q ss_pred CcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCccccc
Q 011794 350 GGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENM 425 (477)
Q Consensus 350 GGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~ 425 (477)
||++||++|++|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||
T Consensus 403 GGa~e~~ls~~l~~~~~~~~~~~-~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~ 481 (517)
T TIGR02342 403 GGAPEIEIAIKLSKLARTMKGVE-SYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDM 481 (517)
T ss_pred cCHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccch
Confidence 99999999999999988777765 79999999999999999999999999999999987 36689999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 011794 426 LQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 461 (477)
Q Consensus 426 ~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~ 461 (477)
++.|||||+.+|+++++.|+|+|++|||||++|+.+
T Consensus 482 ~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 482 LEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred hhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 999999999999999999999999999999999753
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-77 Score=636.61 Aligned_cols=404 Identities=19% Similarity=0.284 Sum_probs=366.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC-----C
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----G 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~-----~ 75 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +
T Consensus 68 ~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~ 147 (522)
T TIGR02345 68 IVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQ 147 (522)
T ss_pred ccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHHHHhcC------CchhHHHHHHHHHHHhCCCC----c--ccccCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 76 RDDIKAVATISAG------NDDLIGTMIADAIDKVGPDG----V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 76 ~~~l~~va~ts~~------~~~~~a~lv~~av~~v~~~~----~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
.+.|.++|+|+++ ++++|++++++|+.++++++ . |....|+++.|| ++++|++|+++|.+|+|.
T Consensus 148 ~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~--- 223 (522)
T TIGR02345 148 REVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE--- 223 (522)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc---
Confidence 5789999999987 57999999999999998652 2 333589999999 899999999999999874
Q ss_pred cccchhccceeEEEeccccC-------------CHHh-----------HHHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 144 EKLIVEFENARVLVTDQKIS-------------AIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i~-------------~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
+|++.++||+|+++|++++ ++++ +..+++++.+.|+++|+++++|++.++++|.+
T Consensus 224 -~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 224 -QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred -cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 4667899999999999864 2333 24567778889999999999999999999999
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~~ 276 (477)
+++ ++ ++++..+++++|+++|||++++ ++++++++.||+|+.++. +++++++|.+|+++
T Consensus 303 ~~I------~~-----~~~v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-- 364 (522)
T TIGR02345 303 HNI------FC-----AGRVSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-- 364 (522)
T ss_pred CCc------EE-----EecCCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--
Confidence 874 44 3567789999999999999999 789999899999999985 46789999988653
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
+++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|+
T Consensus 365 ---------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~ 411 (522)
T TIGR02345 365 ---------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEM 411 (522)
T ss_pred ---------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHH
Confidence 589999999999999999999999999999999986 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
+++.+|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||
T Consensus 412 ~ls~~l~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~ 490 (522)
T TIGR02345 412 ELSKILREHSKKIDGKQ-QLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVW 490 (522)
T ss_pred HHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCce
Confidence 99999999887777765 79999999999999999999999999999999987 35579999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEK 461 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~ 461 (477)
||+.+|+++++.|+|+|++|||||++|+.+
T Consensus 491 dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 491 EPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred EcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 999999999999999999999999999774
No 27
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.9e-77 Score=634.76 Aligned_cols=401 Identities=19% Similarity=0.301 Sum_probs=363.6
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCC-----
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG----- 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~----- 75 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|+++
T Consensus 78 ~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~ 157 (533)
T PTZ00212 78 LDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKF 157 (533)
T ss_pred CcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHHHHHhcCC------chhHHHHHHHHHHHhCCC---Cc--ccccCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 76 RDDIKAVATISAGN------DDLIGTMIADAIDKVGPD---GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 76 ~~~l~~va~ts~~~------~~~~a~lv~~av~~v~~~---~~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
.+.|.++|+|+++. .+.|++++++|+..+... .. |.+.+|++++|| ++++|+++++++.+
T Consensus 158 ~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~-------- 228 (533)
T PTZ00212 158 KEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV-------- 228 (533)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------
Confidence 57899999988753 488999999999988542 12 344689999999 89999999998654
Q ss_pred ccchhccceeEEEecccc--------------CCHHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 145 KLIVEFENARVLVTDQKI--------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~i--------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
.|+++++||+|+++|+++ ++++++ .++++.|++.|+++++++++|++.++++|.+
T Consensus 229 ~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~ 308 (533)
T PTZ00212 229 GQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAE 308 (533)
T ss_pred CCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHH
Confidence 267899999999999986 455443 2357788999999999999999999999999
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~ 276 (477)
+++ +||+ ++++++++|||++|||++++ +++++++++||+|+.|+ ++++++++|++|..
T Consensus 309 ~~I------~avr-----~v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~--- 369 (533)
T PTZ00212 309 AGI------MAIE-----HADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK--- 369 (533)
T ss_pred CCC------EEEe-----cCCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC---
Confidence 874 6664 55689999999999999999 88999989999999998 57789999998864
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+
T Consensus 370 --------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~ 417 (533)
T PTZ00212 370 --------------------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEM 417 (533)
T ss_pred --------------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHH
Confidence 4689999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
+++.+|++++++..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||
T Consensus 418 ~ls~~L~~~~~~~~~~~-~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~ 496 (533)
T PTZ00212 418 LMANAVEELAKKVEGKK-SLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGIT 496 (533)
T ss_pred HHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccce
Confidence 99999999988777765 79999999999999999999999999999999984 46789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEKP 462 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~ 462 (477)
||+.+|+++++.|+|+|++|||||++|..+|
T Consensus 497 dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 497 ESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 9999999999999999999999999998864
No 28
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.5e-77 Score=634.99 Aligned_cols=399 Identities=24% Similarity=0.320 Sum_probs=360.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC----CH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GR 76 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~----~~ 76 (477)
++||+|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++++++++ +.
T Consensus 78 ~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 157 (532)
T TIGR02343 78 VDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNK 157 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999874 36
Q ss_pred HHHHHHHHHhcCC------chhHHHHHHHHHHHhCCC--C-----c--ccccCCCccccceEEEEeeEEcccccCCCCcc
Q 011794 77 DDIKAVATISAGN------DDLIGTMIADAIDKVGPD--G-----V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVT 141 (477)
Q Consensus 77 ~~l~~va~ts~~~------~~~~a~lv~~av~~v~~~--~-----~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~ 141 (477)
+.|.++|+|+++. .+.|++++++|+..+... + . |...+|++++|| ++++|++|+++|.+|+
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~--- 233 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ--- 233 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC---
Confidence 7899999999864 478999999999988531 1 1 333699999999 9999999999999986
Q ss_pred CccccchhccceeEEEeccc-------------cCCHHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHHHH
Q 011794 142 NPEKLIVEFENARVLVTDQK-------------ISAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATL 197 (477)
Q Consensus 142 ~~~~~~~~~~~~~Ill~~~~-------------i~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l 197 (477)
|++.++||||++++++ +++++++ .++++++++.|+||||++++|++.++++|
T Consensus 234 ----m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L 309 (532)
T TIGR02343 234 ----MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLL 309 (532)
T ss_pred ----CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHH
Confidence 4567789999999875 3455555 67899999999999999999999999999
Q ss_pred HHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ec--ccEEEEeCCC
Q 011794 198 VVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RK--DSTTIIADAA 272 (477)
Q Consensus 198 ~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~--~~~~~~~~~~ 272 (477)
.+|++ .+|+ ++++++|+|||++|||++++ +++++++++||+|+.|+. +. +++++|++|+
T Consensus 310 ~~~~i------~~v~-----~~~~~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~ 373 (532)
T TIGR02343 310 LQNDL------PAVR-----WVGGHELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCK 373 (532)
T ss_pred HHCCc------EEEE-----cCCHHHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCC
Confidence 99975 5554 45688999999999999999 899999999999999984 33 4788999887
Q ss_pred ChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCc
Q 011794 273 SKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGG 351 (477)
Q Consensus 273 ~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGG 351 (477)
++ +.+||+|||+|+.+++|++|+++||+++++++++++ +|||||
T Consensus 374 ~~-----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGG 418 (532)
T TIGR02343 374 NS-----------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGG 418 (532)
T ss_pred CC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcC
Confidence 64 479999999999999999999999999999999997 999999
Q ss_pred HHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc-----cCCceeEEcCCCcccccc
Q 011794 352 AALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENML 426 (477)
Q Consensus 352 a~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~-----~~~~~G~d~~~g~i~d~~ 426 (477)
++||+++++|++++.++.+.+ ++++++|++||+.||++|++|||+|+.+++++|++ .+.++|+|+.+|++.||+
T Consensus 419 a~e~~ls~~l~~~~~~~~~~~-~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~ 497 (532)
T TIGR02343 419 AAEISCSLAVSQEADKYSGVE-QYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMK 497 (532)
T ss_pred HHHHHHHHHHHHHhccCCcHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccch
Confidence 999999999999988788876 79999999999999999999999999999999985 256799999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 011794 427 QAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 459 (477)
Q Consensus 427 ~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~ 459 (477)
+.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 498 ~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 498 EQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred hccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 999999999999999999999999999999985
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-76 Score=631.92 Aligned_cols=410 Identities=21% Similarity=0.326 Sum_probs=365.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccc-cCC---CH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR-PIE---GR 76 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~-~~~---~~ 76 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++ +++ +.
T Consensus 69 ~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 148 (531)
T TIGR02346 69 VQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNK 148 (531)
T ss_pred ccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999986 764 47
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHHhCCCC--cccc-------cCCCccccceEEEEeeEEcccccCCCCccC
Q 011794 77 DDIKAVATISAG-----NDDLIGTMIADAIDKVGPDG--VLSI-------ESSSSFETTVEVEEGMEIDRGYISPQFVTN 142 (477)
Q Consensus 77 ~~l~~va~ts~~-----~~~~~a~lv~~av~~v~~~~--~I~i-------~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~ 142 (477)
+.+.++|+|+++ +++.|++++++|+.++++++ .+.+ ..|++++|| ++++|++|++++.
T Consensus 149 ~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~------- 220 (531)
T TIGR02346 149 KELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE------- 220 (531)
T ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC-------
Confidence 789999998874 38999999999999998754 3322 389999998 9999999999842
Q ss_pred ccccchhccceeEEEecccc-------------CCHH-----------hHHHHHHHHHhcCCCEEEEeccccHHHHHHHH
Q 011794 143 PEKLIVEFENARVLVTDQKI-------------SAIK-----------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLV 198 (477)
Q Consensus 143 ~~~~~~~~~~~~Ill~~~~i-------------~~~~-----------~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~ 198 (477)
.+++.++||||+++++++ ++++ +++++++++++.|+||||++++|++.++++|.
T Consensus 221 --~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~ 298 (531)
T TIGR02346 221 --GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCE 298 (531)
T ss_pred --CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHH
Confidence 245788999999999874 2332 34678899999999999999999999999998
Q ss_pred HhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChH
Q 011794 199 VNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKD 275 (477)
Q Consensus 199 ~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~ 275 (477)
+++ |+||++++ ..+|+|||.+|||++++ ++++++.++||+|+.|++ +++++.+|.++..
T Consensus 299 ~~~------I~av~~~~-----~~~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-- 360 (531)
T TIGR02346 299 KYN------IMVLKIPS-----KFELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-- 360 (531)
T ss_pred HCC------cEEEecCC-----HHHHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--
Confidence 765 68877665 67999999999999999 788999899999999986 4568889987652
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHH
Q 011794 276 EIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAAL 354 (477)
Q Consensus 276 ~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e 354 (477)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|
T Consensus 361 --------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e 408 (531)
T TIGR02346 361 --------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATE 408 (531)
T ss_pred --------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHH
Confidence 25789999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCc--ccccccC
Q 011794 355 VHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDK--YENMLQA 428 (477)
Q Consensus 355 ~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~--i~d~~~~ 428 (477)
|+++.+|++++.+..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|+ +.||++.
T Consensus 409 ~~ls~~L~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~ 487 (531)
T TIGR02346 409 IELALRLKKYANKLPGLD-QYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEA 487 (531)
T ss_pred HHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhc
Confidence 999999999987777765 79999999999999999999999999999999977 3567999999999 5999999
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCC
Q 011794 429 GVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 474 (477)
Q Consensus 429 gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~ 474 (477)
|||||+.+|+++|+.|+|+|++|||||++|..+| ..+|++|||
T Consensus 488 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~---~~~~~~~~~ 530 (531)
T TIGR02346 488 GIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKP---AGGPKPPQG 530 (531)
T ss_pred CceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCC---CCCCCCCCC
Confidence 9999999999999999999999999999998764 456677776
No 30
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-75 Score=622.81 Aligned_cols=403 Identities=21% Similarity=0.334 Sum_probs=361.8
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCC-----
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG----- 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~----- 75 (477)
++||+|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++
T Consensus 67 i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (519)
T TIGR02341 67 VDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKF 146 (519)
T ss_pred CcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred HHHHHHHHHHhcCC------chhHHHHHHHHHHHhCCC---Ccccc--cCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 76 RDDIKAVATISAGN------DDLIGTMIADAIDKVGPD---GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 76 ~~~l~~va~ts~~~------~~~~a~lv~~av~~v~~~---~~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
.++|.++|+|+++. .+.|++++++|+..+... ..|++ .+|++++|| ++++|+++++.+.+
T Consensus 147 ~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~-------- 217 (519)
T TIGR02341 147 RDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV-------- 217 (519)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------
Confidence 57899999998864 478999999999988432 12444 489999999 89999999998654
Q ss_pred ccchhccceeEEEeccccCC--------------HHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 145 KLIVEFENARVLVTDQKISA--------------IKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~i~~--------------~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
.|++.++||+|+++|++++. ++++ ..+++.|++.|++++++++.|++.++++|.+
T Consensus 218 ~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~ 297 (519)
T TIGR02341 218 NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFAD 297 (519)
T ss_pred CCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHH
Confidence 25678999999999998753 3232 2347789999999999999999999999998
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~~ 276 (477)
++ |++++.+ ++.+|+|||++|||++++ ++++++.++||+|+.|+. +++++++|.+|++
T Consensus 298 ~~------I~~v~~~-----~~~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~--- 358 (519)
T TIGR02341 298 AG------VMAIEHA-----DFEGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL--- 358 (519)
T ss_pred CC------cEEEecC-----CHHHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC---
Confidence 86 5777655 477999999999999999 788998889999999974 5678999999875
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
++.+||+|||+|+.+++|.+|+++||+++++++++++ +||||||+||
T Consensus 359 --------------------------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~ 406 (519)
T TIGR02341 359 --------------------------------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEM 406 (519)
T ss_pred --------------------------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHH
Confidence 3689999999999999999999999999999999997 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
+++++|++++++..+.+ ++++++|++||+.||++|++|||+|+.+++++|++ ++.++|+|+.+|++.||++.|||
T Consensus 407 ~ls~~l~~~~~~~~~~~-~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~ 485 (519)
T TIGR02341 407 LMSKAVAVEAQKVPGKE-ALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGII 485 (519)
T ss_pred HHHHHHHHHhhcCCChH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccce
Confidence 99999999887777765 79999999999999999999999999999999987 35679999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 464 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~ 464 (477)
||+.+|+++++.|+|+|++|||||++|+.+|+.
T Consensus 486 dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 486 ESYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred EcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 999999999999999999999999999998854
No 31
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-76 Score=622.86 Aligned_cols=382 Identities=23% Similarity=0.332 Sum_probs=350.3
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
++||+|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +.+.
T Consensus 67 ~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (480)
T cd03337 67 VAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQ 146 (480)
T ss_pred ccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987 7888
Q ss_pred HHHHHHHhcC------CchhHHHHHHHHHHHhCCC--C---------cccc--cCCCccccceEEEEeeEEcccccCCCC
Q 011794 79 IKAVATISAG------NDDLIGTMIADAIDKVGPD--G---------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 79 l~~va~ts~~------~~~~~a~lv~~av~~v~~~--~---------~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
|.++++|+++ +.+.+++++++|+..++++ + +|++ .+|+++.|| ++++|++|++++.||
T Consensus 147 l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-- 223 (480)
T cd03337 147 MLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-- 223 (480)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC--
Confidence 9999999987 4679999999999999764 2 1333 579999998 999999999999886
Q ss_pred ccCccccchhccceeEEEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchh
Q 011794 140 VTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 219 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~ 219 (477)
+|+++++||+|++++++++. |||++++|++.++++|.+++ |++|+ ++
T Consensus 224 -----~m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~~------I~~v~-----~v 270 (480)
T cd03337 224 -----KMRRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKAG------ITALR-----RV 270 (480)
T ss_pred -----CCCcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHCC------cEEEE-----eC
Confidence 47889999999999999875 99999999999999999986 46654 56
Q ss_pred hhHHHHHHHHHhCceEecCCCCCcccCCCccCCcc-ceEEEE---ecccEEEEeCCCChHHHHHHHHHHHHHHhhccchh
Q 011794 220 RKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVY 295 (477)
Q Consensus 220 ~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 295 (477)
++++|+|||++|||++++ ++++++++.||+ |+.++. +++++++|++|+++
T Consensus 271 ~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~--------------------- 324 (480)
T cd03337 271 RKTDNNRIARACGATIVN-----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP--------------------- 324 (480)
T ss_pred CHHHHHHHHHHHCCEEec-----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC---------------------
Confidence 799999999999999999 788999899999 555553 45688999988753
Q ss_pred hHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhhccCCchhHH
Q 011794 296 DSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADER 374 (477)
Q Consensus 296 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~~~~~~~~~~ 374 (477)
+.+||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||+++++|++++.+..+.+ +
T Consensus 325 --------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~-~ 389 (480)
T cd03337 325 --------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVE-Q 389 (480)
T ss_pred --------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHH-H
Confidence 579999999999999999999999999999999997 999999999999999999888777876 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc-----CCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 011794 375 LGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAG 449 (477)
Q Consensus 375 ~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~ 449 (477)
+++++|++||+.||++|++|||+|+.+++++|++. +.++|+|+.+|++.||++.|||||+.+|+++++.|+|+|+
T Consensus 390 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~ 469 (480)
T cd03337 390 WPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAAC 469 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999872 4579999999999999999999999999999999999999
Q ss_pred HHhchhhhhh
Q 011794 450 MVLTTQAIVV 459 (477)
Q Consensus 450 ~lL~iD~iI~ 459 (477)
+|||||++|.
T Consensus 470 ~iL~id~ii~ 479 (480)
T cd03337 470 MLLRIDDIVS 479 (480)
T ss_pred HHhhhhheec
Confidence 9999999884
No 32
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-76 Score=619.91 Aligned_cols=412 Identities=39% Similarity=0.573 Sum_probs=354.7
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIK 80 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~ 80 (477)
++||+|||++++|++||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++.+.-.
T Consensus 62 lehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~ 141 (524)
T COG0459 62 LEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL 141 (524)
T ss_pred ccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998543111
Q ss_pred HHHHHh-----cCCchhHHHHHHHHHHHhCC-----CCcccc-cCCCccccceEEEEeeEEcccccCCCCccCccccc-h
Q 011794 81 AVATIS-----AGNDDLIGTMIADAIDKVGP-----DGVLSI-ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLI-V 148 (477)
Q Consensus 81 ~va~ts-----~~~~~~~a~lv~~av~~v~~-----~~~I~i-~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~-~ 148 (477)
+++.++ .++++.+++++++|+.+++. ++.+.+ +.|++..|+ ++++|++|+++|.+||| |+ +
T Consensus 142 ~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~------~~~~ 214 (524)
T COG0459 142 KIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYF------MPDK 214 (524)
T ss_pred hhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCC------CCcc
Confidence 455544 34568999999999999998 665544 577787887 99999999999999987 55 7
Q ss_pred hccceeEEEeccccCCHH-------------hH------------HHHHHHHHhcCCC-EEEEeccccHHHHHHHHHhhh
Q 011794 149 EFENARVLVTDQKISAIK-------------DI------------IPLLEKTTQLRAP-LLIIAEDVTGEALATLVVNKL 202 (477)
Q Consensus 149 ~~~~~~Ill~~~~i~~~~-------------~l------------~~~l~~i~~~~~~-lvi~~~~i~~~al~~l~~n~~ 202 (477)
.++||+|+++|++|+..+ ++ ..+++.+.+.|.| +++++++|+|.++++|.++.+
T Consensus 215 ~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I 294 (524)
T COG0459 215 RLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI 294 (524)
T ss_pred ccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc
Confidence 899999999999865332 22 3455667788888 889999999999999988764
Q ss_pred cccceEEEeeCCCcchhhhHHH-HHHHHHhCceEecCCCCCcccCCCccCCcc--ceEEEEecccEEEEeCCCChHHHHH
Q 011794 203 RGILNVAAIKAPGFGERRKALL-QDIAIVTGAEFQAGDLGLLIENTSVEQLGT--ARKVTIRKDSTTIIADAASKDEIQA 279 (477)
Q Consensus 203 ~~~~~v~av~~~~~~~~~~~~l-~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~--~~~v~~~~~~~~~~~~~~~~~~~~~ 279 (477)
.+ ++++.++++ ++|+.++||++++ .+++.++..+|. |+.++...
T Consensus 295 ------lt-----~~~v~~~dl~~~l~~~~ga~~v~-----~~~d~t~~~~G~~~~~~ve~~~----------------- 341 (524)
T COG0459 295 ------LT-----GRRVKKEDLGERLAKLGGAKIVS-----VLKDLTTIVLGEGAAGLVEETK----------------- 341 (524)
T ss_pred ------ee-----cceecchhhHHHHHHccCceEEe-----ecccCceeecCccccceEEEee-----------------
Confidence 33 466678888 7999999999998 788888889998 88887421
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHH
Q 011794 280 RIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLS 358 (477)
Q Consensus 280 ~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s 358 (477)
.++++++++.+|.+. .++.+||+|||+|+.+++|++|+++|||+++++++++| +|||||++|++++
T Consensus 342 ------------~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a 408 (524)
T COG0459 342 ------------TGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAA 408 (524)
T ss_pred ------------ccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHH
Confidence 123344555555555 68899999999999999999999999999999999999 9999999999999
Q ss_pred HhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHccCC--ceeEEcCCCcc-cccccCCcccchH
Q 011794 359 DHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEW--TTGYNAMTDKY-ENMLQAGVIDPAK 435 (477)
Q Consensus 359 ~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~--~~G~d~~~g~i-~d~~~~gI~dp~~ 435 (477)
+.|++++.+..+.++++++++|++||+.||++|++|||+|+.+++++|++.+. ++|+|+.+|++ .||++.|||||+.
T Consensus 409 ~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~ 488 (524)
T COG0459 409 LRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLK 488 (524)
T ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHH
Confidence 99999843334424589999999999999999999999999999999999653 59999999999 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q 011794 436 VTRCALQNAASVAGMVLTTQAIVVEKPKPK 465 (477)
Q Consensus 436 vk~~al~~A~e~a~~lL~iD~iI~~~~~~~ 465 (477)
||+++|+.|+|+|.++||+|++|..+|+..
T Consensus 489 v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 489 VKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999876
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.3e-74 Score=602.59 Aligned_cols=385 Identities=21% Similarity=0.302 Sum_probs=348.3
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhcccc-CC---CH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP-IE---GR 76 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~-~~---~~ 76 (477)
++||.|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|++++.+ +. +.
T Consensus 59 ~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 138 (472)
T cd03341 59 VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNK 138 (472)
T ss_pred ccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCH
Confidence 589999999999999999999999999999999999999999999999999999999999999999998865 43 56
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHHhCCC--Cccc-------ccCCCccccceEEEEeeEEcccccCCCCccC
Q 011794 77 DDIKAVATISAG-----NDDLIGTMIADAIDKVGPD--GVLS-------IESSSSFETTVEVEEGMEIDRGYISPQFVTN 142 (477)
Q Consensus 77 ~~l~~va~ts~~-----~~~~~a~lv~~av~~v~~~--~~I~-------i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~ 142 (477)
+.+.++++|+++ +++.|++++++|+.+++++ |.+. ..+|+++.|| ++++|++|++.+.
T Consensus 139 ~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~------- 210 (472)
T cd03341 139 EEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE------- 210 (472)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC-------
Confidence 778899998863 4689999999999999875 4432 2489999999 9999999987532
Q ss_pred ccccchhccceeEEEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhH
Q 011794 143 PEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKA 222 (477)
Q Consensus 143 ~~~~~~~~~~~~Ill~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~ 222 (477)
+++++++||+|++++++++. |+||||++++|++.++++|.+++ |+||++++ ++
T Consensus 211 --~~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~~~------I~av~~~~-----~~ 263 (472)
T cd03341 211 --GSVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNKYG------IMVIKINS-----KF 263 (472)
T ss_pred --CCceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHHCC------eEEEEeCC-----HH
Confidence 24578999999999999887 89999999999999999998765 68877654 78
Q ss_pred HHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe---cccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHH
Q 011794 223 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEK 299 (477)
Q Consensus 223 ~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 299 (477)
+|+|||++|||++++ ++++++.+++|+|+.|++. ++++++|.+|++.
T Consensus 264 ~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------- 313 (472)
T cd03341 264 ELRRLCRTVGATPLP-----RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED------------------------- 313 (472)
T ss_pred HHHHHHHHhCCEEec-----ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC-------------------------
Confidence 999999999999999 7888888999999999874 4789999987541
Q ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhhccCCchhHHHHHH
Q 011794 300 LAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGAD 378 (477)
Q Consensus 300 l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~ 378 (477)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+..+.+ +++++
T Consensus 314 ---------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~-~~~~~ 383 (472)
T cd03341 314 ---------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLE-QYAIK 383 (472)
T ss_pred ---------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHH-HHHHH
Confidence 4689999999999999999999999999999999999 999999999999999999887777765 79999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHc----cCCceeEEcCCC--cccccccCCcccchHHHHHHHHHHHHHHHHHh
Q 011794 379 IVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTD--KYENMLQAGVIDPAKVTRCALQNAASVAGMVL 452 (477)
Q Consensus 379 ~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~----~~~~~G~d~~~g--~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL 452 (477)
+|++||+.||++|++|||+|+.+++.+|+. ++.++|+|+.+| ++.||++.|||||+.+|+++++.|+|+|++||
T Consensus 384 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 463 (472)
T cd03341 384 KFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVL 463 (472)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999975 255799999999 99999999999999999999999999999999
Q ss_pred chhhhhhc
Q 011794 453 TTQAIVVE 460 (477)
Q Consensus 453 ~iD~iI~~ 460 (477)
|||++|..
T Consensus 464 ~id~ii~~ 471 (472)
T cd03341 464 RVDQIIMA 471 (472)
T ss_pred hhcceeec
Confidence 99999865
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-73 Score=601.58 Aligned_cols=382 Identities=37% Similarity=0.533 Sum_probs=352.6
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhcccc--CCCHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP--IEGRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~--~~~~~~ 78 (477)
++||+|+|++++|++||+++||||||+++|+++|++++.+++++|+||+.|++||+.|++.+++.|++++++ +.+.+.
T Consensus 59 ~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 138 (464)
T cd00309 59 VEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREE 138 (464)
T ss_pred CcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 558889
Q ss_pred HHHHHHHhcC------CchhHHHHHHHHHHHhCC------CCcccc--cCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 79 IKAVATISAG------NDDLIGTMIADAIDKVGP------DGVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 79 l~~va~ts~~------~~~~~a~lv~~av~~v~~------~~~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
+.++|+|+++ +++.+++++++|+..+++ .+.|++ .+|+++.|| ++++|++|+++|.+|+|
T Consensus 139 l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m----- 212 (464)
T cd00309 139 LLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM----- 212 (464)
T ss_pred HHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-----
Confidence 9999999998 789999999999999987 455555 589999999 89999999999999864
Q ss_pred ccchhccceeEEEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHH
Q 011794 145 KLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALL 224 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l 224 (477)
++.++||+|++++++++. ||+++++|++.++++|.+++ |++|+ ++++++|
T Consensus 213 --~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~~------I~~v~-----~~~~~~L 262 (464)
T cd00309 213 --PKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKLG------IMAVR-----RVRKEDL 262 (464)
T ss_pred --ceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHCC------eEEEE-----eCCHHHH
Confidence 678999999999999887 88888899999999999876 57765 4679999
Q ss_pred HHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHH
Q 011794 225 QDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLA 301 (477)
Q Consensus 225 ~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~ 301 (477)
+|||++|||++++ ++++++.+.+|+|+.|++ +++++++|.++..
T Consensus 263 ~~Ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------------------- 309 (464)
T cd00309 263 ERIAKATGATIVS-----RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG---------------------------- 309 (464)
T ss_pred HHHHHHhCCEEec-----ccccCCcccCccccEEEEEEEcCeeEEEEEecCC----------------------------
Confidence 9999999999999 788898899999999986 4567888887754
Q ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHH
Q 011794 302 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIV 380 (477)
Q Consensus 302 ~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~ 380 (477)
++.+||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++++|.+++.+.++.+ ++++++|
T Consensus 310 -------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~-~~~~~~~ 381 (464)
T cd00309 310 -------GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKE-QLGIEAF 381 (464)
T ss_pred -------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHH-HHHHHHH
Confidence 3689999999999999999999999999999999996 999999999999999999987767765 7999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhh
Q 011794 381 QKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 456 (477)
Q Consensus 381 a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~ 456 (477)
++||+.||++|++|||+|+.+++.+|++. ..++|+|..+|++.||++.|||||+.+|+++++.|+|+|++|||||+
T Consensus 382 a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 461 (464)
T cd00309 382 ADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDD 461 (464)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999874 34789999999999999999999999999999999999999999999
Q ss_pred hhh
Q 011794 457 IVV 459 (477)
Q Consensus 457 iI~ 459 (477)
+|+
T Consensus 462 ii~ 464 (464)
T cd00309 462 IIV 464 (464)
T ss_pred HhC
Confidence 984
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=7e-71 Score=585.39 Aligned_cols=402 Identities=28% Similarity=0.448 Sum_probs=366.7
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH-HHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR-DDI 79 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~-~~l 79 (477)
++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||..|++||+.+.+.+++.|+++++++++. +.+
T Consensus 40 ~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l 119 (485)
T PF00118_consen 40 INHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESL 119 (485)
T ss_dssp BSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHH
T ss_pred hccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999998865 899
Q ss_pred HHHHHHhcCCc------hhHHHHHHHHHHHhCCC---Cc--ccccCCCccccceEEEEeeEEcccccCCCCccCccccch
Q 011794 80 KAVATISAGND------DLIGTMIADAIDKVGPD---GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIV 148 (477)
Q Consensus 80 ~~va~ts~~~~------~~~a~lv~~av~~v~~~---~~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~ 148 (477)
+++|+|+++++ +.+++++++|+..+..+ +. +....|++.+|| ++++|++|+++|.++ +|++
T Consensus 120 ~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~ 191 (485)
T PF00118_consen 120 LNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPK 191 (485)
T ss_dssp HHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBS
T ss_pred hhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhcccccccc-ccccceeeecccccc-------cccc
Confidence 99999999876 89999999999444322 11 233688899998 899999999999986 4678
Q ss_pred hccceeEEEeccccCCHHh-----------------------HHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhccc
Q 011794 149 EFENARVLVTDQKISAIKD-----------------------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 205 (477)
Q Consensus 149 ~~~~~~Ill~~~~i~~~~~-----------------------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~ 205 (477)
+++||+|++++++++..+. +.++++++.+.|+||||++++|++.++++|.++++
T Consensus 192 ~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I--- 268 (485)
T PF00118_consen 192 KIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI--- 268 (485)
T ss_dssp EEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH---
T ss_pred ccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh---
Confidence 8899999999999876665 78899999999999999999999999999999986
Q ss_pred ceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEE---EEecccEEEEeC--CCChHHHHHH
Q 011794 206 LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTTIIAD--AASKDEIQAR 280 (477)
Q Consensus 206 ~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v---~~~~~~~~~~~~--~~~~~~~~~~ 280 (477)
.+ +.++++++|++|+++|||++++ ++++++.+.+|+|+.+ +++++++++|++ +.
T Consensus 269 ---~~-----i~~v~~~~l~~i~~~tg~~ii~-----~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-------- 327 (485)
T PF00118_consen 269 ---LV-----IRRVSKEDLERIARATGASIIS-----SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-------- 327 (485)
T ss_dssp ---EE-----ESSEHHHHHHHHHHHHTSBEBS-----SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES--------
T ss_pred ---hc-----cccchHHHHHhhhcccCCcEec-----ccccccchhhhhhhhhhhccccccccccccccccc--------
Confidence 33 4677899999999999999999 7888888889999999 467889999983 43
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHH
Q 011794 281 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSD 359 (477)
Q Consensus 281 i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~ 359 (477)
.++.+||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++|++
T Consensus 328 ---------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~ 380 (485)
T PF00118_consen 328 ---------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSK 380 (485)
T ss_dssp ---------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHH
T ss_pred ---------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhh
Confidence 35789999999999999999999999999999999987 99999999999999
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHc---cCCceeEEcCCCcccccccCCcccchHH
Q 011794 360 HVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD---SEWTTGYNAMTDKYENMLQAGVIDPAKV 436 (477)
Q Consensus 360 ~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~---~~~~~G~d~~~g~i~d~~~~gI~dp~~v 436 (477)
+|++++.+.++.+ ++++++|++||+.||++|++|||+|+.+++++|+. .++++|+|+.+|++.||.+.|||||+.+
T Consensus 381 ~L~~~~~~~~~~~-~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~ 459 (485)
T PF00118_consen 381 ALRKYAKSLSGKE-QLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLV 459 (485)
T ss_dssp HHHHHHHCSSSHH-HHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHH
T ss_pred hHHHhhhcccCch-hhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHH
Confidence 9999988777764 79999999999999999999999999999999998 5679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhcCC
Q 011794 437 TRCALQNAASVAGMVLTTQAIVVEKP 462 (477)
Q Consensus 437 k~~al~~A~e~a~~lL~iD~iI~~~~ 462 (477)
|+++|+.|+|+|++|||||++|..+|
T Consensus 460 k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 460 KISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998876
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-70 Score=519.70 Aligned_cols=406 Identities=20% Similarity=0.322 Sum_probs=366.5
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC-C----
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-G---- 75 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~-~---- 75 (477)
++||+||+|+++|+-||.++|||||||++|+++||+++.+|+.+.+||+.|++||+.|...+++.|.+.++... +
T Consensus 71 vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kf 150 (527)
T KOG0363|consen 71 VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKF 150 (527)
T ss_pred CCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998887543 2
Q ss_pred HHHHHHHHHHhcC------CchhHHHHHHHHHHHhCCCCc-----ccccCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 76 RDDIKAVATISAG------NDDLIGTMIADAIDKVGPDGV-----LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 76 ~~~l~~va~ts~~------~~~~~a~lv~~av~~v~~~~~-----I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
+++|.++|+|++. ..++|++++++|+.++...+. |.+..||+++|| .+=+|+.+++.+..
T Consensus 151 r~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv-------- 221 (527)
T KOG0363|consen 151 REDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV-------- 221 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------
Confidence 6789999999874 368999999999999865443 445799999999 79999999987543
Q ss_pred ccchhccceeEEEeccccC--------------CH-----------HhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 145 KLIVEFENARVLVTDQKIS--------------AI-----------KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~i~--------------~~-----------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
+.|+.++||+||+-|.++. +. +.+...+++|.++|+|+.|..+=|.++..++|..
T Consensus 222 ~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~d 301 (527)
T KOG0363|consen 222 NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFAD 301 (527)
T ss_pred CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhh
Confidence 3578899999999887531 11 1256789999999999999999999999999988
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDE 276 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~ 276 (477)
.+ |+++. +...+-.||++..||+.+++ ++++++...+|+|+.++ +++++++-|.||+-
T Consensus 302 ag------i~aIE-----HADFdGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~--- 362 (527)
T KOG0363|consen 302 AG------IMAIE-----HADFDGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL--- 362 (527)
T ss_pred cC------cceee-----cccchhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc---
Confidence 76 46654 44457889999999999999 89999999999999887 68999999999853
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHH
Q 011794 277 IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALV 355 (477)
Q Consensus 277 ~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~ 355 (477)
|..|||++||+|++.++|.||++|||||++....++. ++.|||+.||
T Consensus 363 --------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm 410 (527)
T KOG0363|consen 363 --------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEM 410 (527)
T ss_pred --------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHH
Confidence 4579999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCcccccccCCcc
Q 011794 356 HLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVI 431 (477)
Q Consensus 356 ~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI~ 431 (477)
..++.+.+++.+.++++ ..++++|++||..+|.+||.|+|+|+.+++++||+. ...+|+|+.+|++.||.+.||+
T Consensus 411 ~Ma~av~~~A~~~pGke-a~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~ 489 (527)
T KOG0363|consen 411 LMAKAVDKEAQETPGKE-ALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIV 489 (527)
T ss_pred HHHHHHHHHHhhCCchh-hHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhH
Confidence 99999999999999986 799999999999999999999999999999999994 6789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCC
Q 011794 432 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP 467 (477)
Q Consensus 432 dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~ 467 (477)
|++.+|...+..|.|+|.+|||+|.||...|+.+.|
T Consensus 490 es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 490 ESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 999999999999999999999999999999998865
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-67 Score=507.26 Aligned_cols=405 Identities=21% Similarity=0.310 Sum_probs=358.3
Q ss_pred CChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHHH
Q 011794 2 ENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDI 79 (477)
Q Consensus 2 ~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~l 79 (477)
-||+|+||+++|..||.++||||||||+|+|+||+.+.+|+++|+||+.|...|+.|.+..+++|.+++.|++ |++.|
T Consensus 78 lhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~L 157 (534)
T KOG0358|consen 78 LHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESL 157 (534)
T ss_pred hChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999887 88889
Q ss_pred HHHHHHhcC------CchhHHHHHHHHHHHhCC-CC-------cccc--cCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 80 KAVATISAG------NDDLIGTMIADAIDKVGP-DG-------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 80 ~~va~ts~~------~~~~~a~lv~~av~~v~~-~~-------~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
.+-|.||+| +...++++.++|+.++.. +. .|++ +.|+.++|+ ++++|++|+......
T Consensus 158 i~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~------ 230 (534)
T KOG0358|consen 158 IKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS------ 230 (534)
T ss_pred HHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC------
Confidence 999999986 467899999999998744 21 2443 589999999 999999998775432
Q ss_pred cccchhccceeEEEecccc-------------CCHHh-----------HHHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 144 EKLIVEFENARVLVTDQKI-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i-------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
..|..++++||-++.+.| +++.+ +++++++|+++|+|++++|++|=.++++-|+.
T Consensus 231 -~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAl 309 (534)
T KOG0358|consen 231 -AGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLAL 309 (534)
T ss_pred -CCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHH
Confidence 146788899988887743 23322 46789999999999999999986555555555
Q ss_pred hhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE----ecccEEEEeCCCChH
Q 011794 200 NKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI----RKDSTTIIADAASKD 275 (477)
Q Consensus 200 n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~----~~~~~~~~~~~~~~~ 275 (477)
|.+. .++|++|| ++.+++.|-+++.+|++|+. +++.++++.||+++-++. ++.+++-+.++.++
T Consensus 310 HfL~-klkimvik-----dieRediefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~- 377 (534)
T KOG0358|consen 310 HFLA-KLKIMVIK-----DIEREDIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA- 377 (534)
T ss_pred HHHH-hCcEEEEc-----cccHhhHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC-
Confidence 4432 25688875 56789999999999999999 899999999999999974 35577888887664
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHH
Q 011794 276 EIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAAL 354 (477)
Q Consensus 276 ~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e 354 (477)
|+.++|++||+++..++|.+|++|||||++|+..+.. ++||||+.|
T Consensus 378 ---------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapE 424 (534)
T KOG0358|consen 378 ---------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPE 424 (534)
T ss_pred ---------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcc
Confidence 6789999999999999999999999999999999987 999999999
Q ss_pred HHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCcccccccCCc
Q 011794 355 VHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGV 430 (477)
Q Consensus 355 ~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~gI 430 (477)
|+++..|.+++.+..|.+ .+.+++||+|||.+|.+|++|||++|..++++||+. +.+.|++++.|.+.||.+..|
T Consensus 425 ieia~~L~~~a~t~eG~~-~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~V 503 (534)
T KOG0358|consen 425 IEIALRLSALARTLEGVE-AYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENV 503 (534)
T ss_pred hHHHHHHHHHHhhhccch-hHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhc
Confidence 999999999999999986 689999999999999999999999999999999983 689999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q 011794 431 IDPAKVTRCALQNAASVAGMVLTTQAIVVE 460 (477)
Q Consensus 431 ~dp~~vk~~al~~A~e~a~~lL~iD~iI~~ 460 (477)
+.|+.|-.+++..|+|++.+||+||+|+..
T Consensus 504 vQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 504 VQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999864
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-66 Score=505.38 Aligned_cols=404 Identities=21% Similarity=0.302 Sum_probs=367.7
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCC--CHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDD 78 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~--~~~~ 78 (477)
+.||+|+-+.+++.+||+++|||||||++|++++|..+..++++|+||+.|+++|.+|++.++..++.+++|++ +...
T Consensus 70 Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~k 149 (527)
T KOG0364|consen 70 VAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAK 149 (527)
T ss_pred hcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999888887 6677
Q ss_pred HHHHHHHhcC------CchhHHHHHHHHHHHhCCC-Cc---------ccccCCCccccceEEEEeeEEcccccCCCCccC
Q 011794 79 IKAVATISAG------NDDLIGTMIADAIDKVGPD-GV---------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTN 142 (477)
Q Consensus 79 l~~va~ts~~------~~~~~a~lv~~av~~v~~~-~~---------I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~ 142 (477)
++.+..++.. +.+.++++..+|+.+++.+ |. +.+++|+.++|| ++++|+.+.+...||
T Consensus 150 m~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hp----- 223 (527)
T KOG0364|consen 150 MLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHP----- 223 (527)
T ss_pred HHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcH-----
Confidence 8888877753 5788999999999999875 32 234699999999 899999999999997
Q ss_pred ccccchhccceeEEEeccccC------------------------CHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHH
Q 011794 143 PEKLIVEFENARVLVTDQKIS------------------------AIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLV 198 (477)
Q Consensus 143 ~~~~~~~~~~~~Ill~~~~i~------------------------~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~ 198 (477)
+|+..++||+|+++|++++ +.+++..+++.+....++||++.+++++.+.++|.
T Consensus 224 --kmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~ 301 (527)
T KOG0364|consen 224 --KMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLL 301 (527)
T ss_pred --HHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHH
Confidence 4788999999999999853 12345678889999999999999999999999999
Q ss_pred HhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCcc-ceEEEE---ecccEEEEeCCCCh
Q 011794 199 VNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASK 274 (477)
Q Consensus 199 ~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~~~~~~ 274 (477)
++++ .++++++++|..||+++||+++++ +++++.+.+.|+ |+.+++ ++++|+||..|.+|
T Consensus 302 k~~i-----------T~~rr~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p 365 (527)
T KOG0364|consen 302 KANI-----------TAIRRLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP 365 (527)
T ss_pred hcCc-----------hhhhhhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCC
Confidence 9886 347899999999999999999999 899999999996 788885 68899999999987
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHH
Q 011794 275 DEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAA 353 (477)
Q Consensus 275 ~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~ 353 (477)
+.|||++||+|..+++|.+|.+.||+.+.|+.+-++ ++|||||+
T Consensus 366 -----------------------------------kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAt 410 (527)
T KOG0364|consen 366 -----------------------------------KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGAT 410 (527)
T ss_pred -----------------------------------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHH
Confidence 469999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc----CCceeEEcCCCcccccccCC
Q 011794 354 LVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAG 429 (477)
Q Consensus 354 e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~----~~~~G~d~~~g~i~d~~~~g 429 (477)
||.+|+.|.+.+....+.+ +|.+.+.+.||+.+|++|++|+|.++...+..++.. ...+|+|..+|.++||.+.+
T Consensus 411 EMAvs~~L~qksa~~~GVe-kwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~ 489 (527)
T KOG0364|consen 411 EMAVSHELRQKSALMTGVE-KWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELG 489 (527)
T ss_pred HHHHHHHHHHHHhhccchh-ccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeecc
Confidence 9999999999887778876 799999999999999999999999999999998873 46778999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q 011794 430 VIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP 464 (477)
Q Consensus 430 I~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~ 464 (477)
+|+|..+|.+..++|+|.++++||+|+|++..++.
T Consensus 490 iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 490 IWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 99999999999999999999999999999877654
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-63 Score=490.54 Aligned_cols=405 Identities=20% Similarity=0.269 Sum_probs=356.1
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccc----cCCCH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR----PIEGR 76 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~----~~~~~ 76 (477)
++||+||||++++++|+++.||||+++|+|+++||++|.++|..|++|..|++||+.|...+++.|+++.. +++|.
T Consensus 77 v~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~ 156 (537)
T KOG0362|consen 77 VEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDK 156 (537)
T ss_pred ccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999998654 33344
Q ss_pred HHHHHHHHHhc-----CCchhHHHHHHHHHHHhCCCCc-----cc--ccCCCccccceEEEEeeEEcccccCCCCccCcc
Q 011794 77 DDIKAVATISA-----GNDDLIGTMIADAIDKVGPDGV-----LS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPE 144 (477)
Q Consensus 77 ~~l~~va~ts~-----~~~~~~a~lv~~av~~v~~~~~-----I~--i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 144 (477)
+ .++++++ .+++++++++++|+..+.+.+. |. +..|+++++| +++.|++|.+. ++
T Consensus 157 ~---~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~---------~e 223 (537)
T KOG0362|consen 157 E---WALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRD---------PE 223 (537)
T ss_pred H---HHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccc---------cC
Confidence 4 4444443 3589999999999999988743 32 3689999999 89999999887 34
Q ss_pred ccchhccceeEEEeccc-------------cCCHHhHH-----------HHHHHHHhcCCCEEEEeccccHHHHHHHHHh
Q 011794 145 KLIVEFENARVLVTDQK-------------ISAIKDII-----------PLLEKTTQLRAPLLIIAEDVTGEALATLVVN 200 (477)
Q Consensus 145 ~~~~~~~~~~Ill~~~~-------------i~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n 200 (477)
+.+.+-+..+|.++.|+ |++++++. ..++.+...|+++|++...+++.+|+++.+
T Consensus 224 G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnk- 302 (537)
T KOG0362|consen 224 GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK- 302 (537)
T ss_pred CcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhcc-
Confidence 45567788999999998 56666654 456778889999999999999999999854
Q ss_pred hhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEE---EecccEEEEeCCCChHHH
Q 011794 201 KLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEI 277 (477)
Q Consensus 201 ~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~~~~~~~~~ 277 (477)
+++++++.++ +.+|.||++..||++++ ++..+....+|+|++|. ++++.++.|.....
T Consensus 303 -----y~ImVlqi~S-----k~eLrrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~---- 363 (537)
T KOG0362|consen 303 -----YKIMVLQINS-----KFDLRRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST---- 363 (537)
T ss_pred -----ccEEEEEecc-----HhhHHHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC----
Confidence 3579988775 89999999999999999 88889899999999986 46777777764221
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHH
Q 011794 278 QARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVH 356 (477)
Q Consensus 278 ~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~ 356 (477)
.+++.|++|||+++..+|+.||+++|++++++...+++ ++||+|++|++
T Consensus 364 ------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEie 413 (537)
T KOG0362|consen 364 ------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIE 413 (537)
T ss_pred ------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHH
Confidence 14689999999999999999999999999999999998 99999999999
Q ss_pred HHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc---CCceeEEcCCC-cccccccCCccc
Q 011794 357 LSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS---EWTTGYNAMTD-KYENMLQAGVID 432 (477)
Q Consensus 357 ~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~---~~~~G~d~~~g-~i~d~~~~gI~d 432 (477)
+++.|.+++..++|.+ ++++++|++||+.+|++|++|+|+++.+++++|.+. ..+.|+|+... ...|+.+.||||
T Consensus 414 Lak~i~~~g~~~~Gl~-q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D 492 (537)
T KOG0362|consen 414 LAKQISSRGATLPGLK-QLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWD 492 (537)
T ss_pred HHHHHHHhcccCCCcc-hhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHH
Confidence 9999999999999998 699999999999999999999999999999999884 45679998877 589999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCC
Q 011794 433 PAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVA 469 (477)
Q Consensus 433 p~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~ 469 (477)
-+..|.++++.|+|+|.++|++|+||+++|...|.+|
T Consensus 493 ~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 493 TLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP 529 (537)
T ss_pred HHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCC
Confidence 9999999999999999999999999999999754333
No 40
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-63 Score=491.20 Aligned_cols=411 Identities=21% Similarity=0.268 Sum_probs=361.9
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHh-ccccCC--CHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRD 77 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~~~--~~~ 77 (477)
++||++|+|++.++.||+++|||||+|++++++||+.+.+|+..++||+.|++||+.|+..+++++.+ ++.|++ .++
T Consensus 70 V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~ 149 (545)
T KOG0360|consen 70 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQ 149 (545)
T ss_pred hcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999986 778887 578
Q ss_pred HHHHHHHHhcCC------chhHHHHHHHHHHHhCC---CCc---------ccccCCCccccceEEEEeeEEcccccCCCC
Q 011794 78 DIKAVATISAGN------DDLIGTMIADAIDKVGP---DGV---------LSIESSSSFETTVEVEEGMEIDRGYISPQF 139 (477)
Q Consensus 78 ~l~~va~ts~~~------~~~~a~lv~~av~~v~~---~~~---------I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~ 139 (477)
.|.++++|++++ .++|++++++|+..+.- +|. |-+-+|++..|| .+++|+.++....+.
T Consensus 150 ~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-- 226 (545)
T KOG0360|consen 150 ILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-- 226 (545)
T ss_pred HHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh--
Confidence 899999999753 58999999999987632 232 223489999999 799999999887764
Q ss_pred ccCccccchhccceeEEEecccc-------------CCHHhH-----------HHHHHHHHhcCCCEEEEeccccHHHHH
Q 011794 140 VTNPEKLIVEFENARVLVTDQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALA 195 (477)
Q Consensus 140 ~~~~~~~~~~~~~~~Ill~~~~i-------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~ 195 (477)
.|+..++|+||+++|+.+ .+++.+ +..+++|.+.|+|+|+++++|||..++
T Consensus 227 -----~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K 301 (545)
T KOG0360|consen 227 -----MMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLK 301 (545)
T ss_pred -----ccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHH
Confidence 478889999999999863 445433 345778999999999999999999999
Q ss_pred HHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcc-cCCCccCCccceEEE---EecccEEEEeCC
Q 011794 196 TLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLI-ENTSVEQLGTARKVT---IRKDSTTIIADA 271 (477)
Q Consensus 196 ~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~-~~~~~~~lG~~~~v~---~~~~~~~~~~~~ 271 (477)
+|+.++. +| ++|..+++|++|+++||++++++..++.- +.+.+..+|+|++|. +++++++++.+.
T Consensus 302 ~~veaga------mA-----VrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ 370 (545)
T KOG0360|consen 302 YFVEAGA------MA-----VRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGT 370 (545)
T ss_pred HHHHcch------hh-----hHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccC
Confidence 9999874 44 57889999999999999999994332221 245678899999985 578898888864
Q ss_pred CChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCC
Q 011794 272 ASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGG 350 (477)
Q Consensus 272 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGG 350 (477)
+. ..++|++||++++.++|++|++|||+++++..++++ +||||
T Consensus 371 ka------------------------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGG 414 (545)
T KOG0360|consen 371 KA------------------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGG 414 (545)
T ss_pred cc------------------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCc
Confidence 32 368999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc------------CCceeEEcC
Q 011794 351 GAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAM 418 (477)
Q Consensus 351 Ga~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~------------~~~~G~d~~ 418 (477)
|++|..++-+|++++.+..+++ ++++..|+.||..+|++|+-|++.|+.+++.++|+. ..|+|.|+.
T Consensus 415 G~vE~aLs~yle~~a~s~~srE-~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ 493 (545)
T KOG0360|consen 415 GAVETALSIYLENFATSVGSRE-QLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLI 493 (545)
T ss_pred cHHHHHHHHHHHhhcccCccHH-HHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCcccc
Confidence 9999999999999999888776 678999999999999999999999999999999883 458999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCC
Q 011794 419 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP 467 (477)
Q Consensus 419 ~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~ 467 (477)
+|++.|.++.|+++|..+|...|+.|+|.+.++||+|+.|.-.|..+..
T Consensus 494 ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~ 542 (545)
T KOG0360|consen 494 NGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA 542 (545)
T ss_pred ccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence 9999999999999999999999999999999999999999877766543
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-59 Score=453.71 Aligned_cols=400 Identities=21% Similarity=0.327 Sum_probs=356.7
Q ss_pred CCChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHH
Q 011794 1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIK 80 (477)
Q Consensus 1 ~~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~ 80 (477)
++||-|-++..++..||+..||||||+|+|.++|+++|..++..|+||..|.+||+.|.+.++++|++.+.+++ ++.|.
T Consensus 68 iqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-~~~L~ 146 (520)
T KOG0359|consen 68 IQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-RETLK 146 (520)
T ss_pred hcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-HHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998777775 78999
Q ss_pred HHHHHhcCC------chhHHHHHHHHHHHhCC-CCcc-----cc--cCCCccccceEEEEeeEEcccccCCCCccCcccc
Q 011794 81 AVATISAGN------DDLIGTMIADAIDKVGP-DGVL-----SI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKL 146 (477)
Q Consensus 81 ~va~ts~~~------~~~~a~lv~~av~~v~~-~~~I-----~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~ 146 (477)
.+++|+++. -+.+++++++|+..+.. ++.| ++ -+..+..|+ .+++|++++||-.||. |
T Consensus 147 ~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------m 218 (520)
T KOG0359|consen 147 DVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------M 218 (520)
T ss_pred HHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------c
Confidence 999999875 36788888999988763 3322 12 356788898 8999999999999984 7
Q ss_pred chhccceeEEEeccccCCH-------------Hh-----------HHHHHHHHHhcCC----CEEEEeccccHHHHHHHH
Q 011794 147 IVEFENARVLVTDQKISAI-------------KD-----------IIPLLEKTTQLRA----PLLIIAEDVTGEALATLV 198 (477)
Q Consensus 147 ~~~~~~~~Ill~~~~i~~~-------------~~-----------l~~~l~~i~~~~~----~lvi~~~~i~~~al~~l~ 198 (477)
|+.++|++|+++|.+++.. +| +.+.+++|++.+. -+||.+++|||..++.|+
T Consensus 219 p~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a 298 (520)
T KOG0359|consen 219 PRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLA 298 (520)
T ss_pred ccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhh
Confidence 8999999999999875422 11 2344566666543 466999999999999999
Q ss_pred HhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEE---ecccEEEEeCCCChH
Q 011794 199 VNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKD 275 (477)
Q Consensus 199 ~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~~~~~~~ 275 (477)
+++| + +.|+.++.+|||+..+|||..++ +++|+++++||+|+.|+. ++++|+|+++|.+|
T Consensus 299 ~~gI------l-----aLRRAKRRNmERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p- 361 (520)
T KOG0359|consen 299 KSGI------L-----ALRRAKRRNMERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP- 361 (520)
T ss_pred hcch------H-----HHHHHhhhhHHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC-
Confidence 9886 3 46888999999999999999999 899999999999999974 79999999999987
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHH
Q 011794 276 EIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAAL 354 (477)
Q Consensus 276 ~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e 354 (477)
+.|||+++|||++.+.+.+++++|++++++++++++ ++||+|++|
T Consensus 362 ----------------------------------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~ 407 (520)
T KOG0359|consen 362 ----------------------------------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFE 407 (520)
T ss_pred ----------------------------------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHH
Confidence 469999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHcc--CCceeEEcCCCcccccccCCccc
Q 011794 355 VHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS--EWTTGYNAMTDKYENMLQAGVID 432 (477)
Q Consensus 355 ~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~--~~~~G~d~~~g~i~d~~~~gI~d 432 (477)
..++.+|+...++.+++. ++++++|++||..+|++|++|+|+|+.+++.+|... ....|+|+.+|+-.+....||||
T Consensus 408 va~~~~lr~~k~~vkgra-~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~D 486 (520)
T KOG0359|consen 408 VALGRHLRESKKSVKGRA-YLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYD 486 (520)
T ss_pred HHHHHHHHHhhhccCchh-hhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccc
Confidence 999999998888888887 799999999999999999999999999999988774 33569999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 011794 433 PAKVTRCALQNAASVAGMVLTTQAIVVEK 461 (477)
Q Consensus 433 p~~vk~~al~~A~e~a~~lL~iD~iI~~~ 461 (477)
.+.||.+.|..++-.|+.||-+|+|+.+-
T Consensus 487 ny~v~~~~l~s~~via~nlLlvDEi~rAG 515 (520)
T KOG0359|consen 487 NYSVKKQLLRSEAVIATNLLLVDEIIRAG 515 (520)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999753
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-56 Score=420.93 Aligned_cols=315 Identities=23% Similarity=0.283 Sum_probs=295.7
Q ss_pred CChHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHH
Q 011794 2 ENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKA 81 (477)
Q Consensus 2 ~hp~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~l~~ 81 (477)
.|+.++++...++.||.++|||||.+++|++.+++++.+++.+|+||..|..||..+...++++|.+.+.+++
T Consensus 71 d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------- 143 (400)
T KOG0357|consen 71 VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------- 143 (400)
T ss_pred chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-------
Confidence 4789999999999999999999999999999999999999999999999999999999999999998877664
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEEEeccc
Q 011794 82 VATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 161 (477)
Q Consensus 82 va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~~ 161 (477)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCC
Q 011794 162 ISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLG 241 (477)
Q Consensus 162 i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~ 241 (477)
+..++++++++|.+|+||+|++||+|.++|..|++ |..+|+.-.++|-||.+|||++++
T Consensus 144 ------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp---- 202 (400)
T KOG0357|consen 144 ------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP---- 202 (400)
T ss_pred ------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec----
Confidence 44567888899999999999999999999999986 667888889999999999999999
Q ss_pred CcccCCCccCCccceEEEE-----ecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794 242 LLIENTSVEQLGTARKVTI-----RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV 316 (477)
Q Consensus 242 ~~~~~~~~~~lG~~~~v~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v 316 (477)
++++++++.||+++.|+. ++|+...++.|++. +.+||.+
T Consensus 203 -rF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifv 246 (400)
T KOG0357|consen 203 -RFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFV 246 (400)
T ss_pred -cHhhhCHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEE
Confidence 899999999999999973 48899999999874 5799999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011794 317 GAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNA 395 (477)
Q Consensus 317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~Na 395 (477)
||.++.+++|.+|++|||||++|+.+++. +|+|||++|+.||-++.+.+.++++.+ |+++++|++||++||..|++|+
T Consensus 247 Rg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~e-qya~rafa~ale~ipmalaens 325 (400)
T KOG0357|consen 247 RGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIE-QYAFRAFADALESIPMALAENS 325 (400)
T ss_pred ecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHH-HHHHHHHHHHHhhcchhhhhcc
Confidence 99999999999999999999999999999 999999999999999999999999987 6899999999999999999999
Q ss_pred CCChHHHHHHHHcc-----CCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 011794 396 GVEGEVVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 461 (477)
Q Consensus 396 G~d~~~~l~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~ 461 (477)
|++|.+.++.+++. .+++|+|+.-..-.||.+.+|+|++..|++.+..|++++.|+|+||+++...
T Consensus 326 gl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 326 GLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred CCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 99999999999883 7899999998888999999999999999999999999999999999998643
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=5.8e-29 Score=235.33 Aligned_cols=192 Identities=35% Similarity=0.488 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHHhCCC------Ccccc--cCCCccccceEEEEeeEEcccccCCCCccCc
Q 011794 77 DDIKAVATISAG-----NDDLIGTMIADAIDKVGPD------GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNP 143 (477)
Q Consensus 77 ~~l~~va~ts~~-----~~~~~a~lv~~av~~v~~~------~~I~i--~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~ 143 (477)
+.|.++|+|+++ +++.+++++++|+..++++ ++|++ .+|+++.|| ++++|++|+++|.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468899999998 7899999999999999872 44444 689999999 9999999999999986
Q ss_pred cccchhccceeEEEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHH
Q 011794 144 EKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKAL 223 (477)
Q Consensus 144 ~~~~~~~~~~~Ill~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~ 223 (477)
|++.++||+|++++++++. +|+++++|++.++++|.+++ |+||+ ++++++
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~-----~~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVR-----RVKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEE-----eCCHHH
Confidence 5688999999999999886 89999999999999999876 46654 467899
Q ss_pred HHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe---cccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHH
Q 011794 224 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300 (477)
Q Consensus 224 l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l 300 (477)
|+|||++|||++++ ++++++.+.||+|+.+++. ++.+++|.+|..
T Consensus 126 l~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~--------------------------- 173 (209)
T cd03333 126 LERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG--------------------------- 173 (209)
T ss_pred HHHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCC---------------------------
Confidence 99999999999999 7888988999999999974 456889988754
Q ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 011794 301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEE 344 (477)
Q Consensus 301 ~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~ 344 (477)
++.+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 174 --------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 --------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred --------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 357999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.96 E-value=2.9e-28 Score=237.25 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=168.8
Q ss_pred CchhHHHHHHHHHHHhCCC---C-------ccc--ccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 89 NDDLIGTMIADAIDKVGPD---G-------VLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 89 ~~~~~a~lv~~av~~v~~~---~-------~I~--i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
|.+.|++++++|+..+.++ + +|+ +.+|+++.|| ++++|+++++++.++ +||+.++||||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4789999999999988532 1 243 3689999999 999999999998875 478899999999
Q ss_pred EeccccCCH------H-----------hHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchh
Q 011794 157 VTDQKISAI------K-----------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 219 (477)
Q Consensus 157 l~~~~i~~~------~-----------~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~ 219 (477)
+++++++.. + .+..+++++++.|+++||++++|++.++++|.++++ +++ +++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI------~~v-----~~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGI------TLV-----LNV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCC------EEE-----Eec
Confidence 999987432 1 245678899999999999999999999999999875 554 567
Q ss_pred hhHHHHHHHHHhCceEecCCCCCc-ccCCCccCCccceEEEEe---c-----ccEEEEeCCCChHHHHHHHHHHHHHHhh
Q 011794 220 RKALLQDIAIVTGAEFQAGDLGLL-IENTSVEQLGTARKVTIR---K-----DSTTIIADAASKDEIQARIAQLKKELAE 290 (477)
Q Consensus 220 ~~~~l~~ia~~tGa~~~~~~~~~~-~~~~~~~~lG~~~~v~~~---~-----~~~~~~~~~~~~~~~~~~i~~l~~~l~~ 290 (477)
++++|+|||++|||++++ + .++++++.||+|+.|++. + +++++|++|..+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 799999999999999999 6 457888899999999863 3 589999998653
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794 291 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG 345 (477)
Q Consensus 291 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g 345 (477)
+.+||+|||+|++.++|.||+++||+++++++..+.
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 579999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.43 E-value=9.6e-13 Score=146.83 Aligned_cols=207 Identities=17% Similarity=0.290 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHHHhCCC----------Cc--ccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794 89 NDDLIGTMIADAIDKVGPD----------GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 156 (477)
Q Consensus 89 ~~~~~a~lv~~av~~v~~~----------~~--I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il 156 (477)
|.+.+..++.+|...+.++ ++ |+.+.||+..|| +++.|+++.+...+ +.|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceE
Confidence 4577888889999988774 23 344789999999 99999999998777 3577899999999
Q ss_pred EeccccC---------CHH--------hHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchh
Q 011794 157 VTDQKIS---------AIK--------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 219 (477)
Q Consensus 157 l~~~~i~---------~~~--------~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~ 219 (477)
++.+++. +.+ .+...+.+|...+++++++.++|++.|.++|....+ .+++ ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I-----~lvl------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGI-----SLVL------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCe-----EEEE------ec
Confidence 9998743 222 244567788888999999999999999999976654 1222 56
Q ss_pred hhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEe--------cccEEEEeCCCChHHHHHHHHHHHHHHhhc
Q 011794 220 RKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR--------KDSTTIIADAASKDEIQARIAQLKKELAET 291 (477)
Q Consensus 220 ~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 291 (477)
++..|+||+++|||.|++ +++.++...||+|..+++. ...++||++|..+
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~----------------- 531 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP----------------- 531 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-----------------
Confidence 789999999999999999 8988999999999999862 3457789999765
Q ss_pred cchhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHH-HHcCCcCCCcHHH
Q 011794 292 DSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAA-IEEGIVPGGGAAL 354 (477)
Q Consensus 292 ~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~-l~~gvvpGGGa~e 354 (477)
..|||++||.+..++.++++.+.-++.++.+. ++.-++.--|+..
T Consensus 532 ------------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 532 ------------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred ------------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 24899999999999999999999998888754 5555776666644
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=7.5e-05 Score=79.79 Aligned_cols=120 Identities=46% Similarity=0.582 Sum_probs=95.1
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccC
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 251 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~ 251 (477)
++..++.+.+|+++.+++.++++..++.|.++++.+++||+.++|++.+++.|++++.+|+.++.+++.+ . ....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~---~--~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG---E--RLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---H--HHHH
Confidence 3444566779999999999999999999999999999999999999999999999999999999986432 1 4578
Q ss_pred CccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEE
Q 011794 252 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAV 313 (477)
Q Consensus 252 lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~t 313 (477)
+|.|..+...++.+....|.+. ...-+++....++...+.+....
T Consensus 312 ~~ga~~v~~~~d~t~~~~G~~~-----------------~~~ve~~~~~~~~~~~~~~~~~~ 356 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLGEGA-----------------AGLVEETKTGDYDMEKLQERKAK 356 (524)
T ss_pred ccCceEEeecccCceeecCccc-----------------cceEEEeeccchhhhhhhhhhhc
Confidence 8999999988777766665320 11223444567777888888765
No 47
>smart00574 POX domain associated with HOX domains.
Probab=38.03 E-value=80 Score=27.65 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=42.5
Q ss_pred chhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhh
Q 011794 293 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIK 365 (477)
Q Consensus 293 ~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~ 365 (477)
+..||..++.+.++|.. .++|++++++-...=++.....- .|+|+|++-.+.+-+|+..+
T Consensus 68 s~~~r~e~q~kk~kLl~-------------mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 68 STAERQELQRKKAKLLS-------------MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred chhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34566777777766543 47788888887777777666653 78999998888776666544
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.10 E-value=2e+02 Score=24.56 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCEEEEeccccHHHHHHHHHhhh
Q 011794 170 PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL 202 (477)
Q Consensus 170 ~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~ 202 (477)
.+.+.+++.|+++||+. .+.+.+...|...++
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GI 87 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGI 87 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCc
Confidence 35778889999999964 899999999977764
No 49
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=34.11 E-value=98 Score=30.30 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCce
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAE 234 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~ 234 (477)
+|.+.+.+++|||.....++.....|.+.+ ++|..+......++ .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~g----i~v~~~~~~~~~~~-~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLG----VEATFLNLTSVDGM-KKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcC----CcEEEEcCCCHHHH-HHHHHHHHHHhCCH
Confidence 788889999999998777777777675543 34555543233333 45677787777755
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=32.25 E-value=2.1e+02 Score=22.74 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCce
Q 011794 170 PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAE 234 (477)
Q Consensus 170 ~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~ 234 (477)
+-++.+.+-...+|++++|+++.....+..-=.+.+++++-| ..+++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V----------~s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF----------KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE----------CCHHHHHHHhCCC
Confidence 345555566788999999999887765432211222333322 3456777777765
No 51
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=30.64 E-value=1.4e+02 Score=26.79 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCC-cchhhhHHHHHHHHHhCce
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPG-FGERRKALLQDIAIVTGAE 234 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~-~~~~~~~~l~~ia~~tGa~ 234 (477)
+|.+.+.+++|||............|.+.+ +.++.+.... +.++ .+.++.++.++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~g----i~v~~~~~~~~~~~~-~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAG----IPVVVLPAASSLDEI-YDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcC----CcEEEeCCCCCHHHH-HHHHHHHHHHhCCh
Confidence 678888999999886555554555555443 3455554322 2222 34566666666543
No 52
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=28.26 E-value=67 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHcCCChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 011794 389 SLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAG 449 (477)
Q Consensus 389 ~~L~~NaG~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~ 449 (477)
..|..|.++..-.++.+|.. ++||| +++.++...||||.....+++..++.-++
T Consensus 32 ~~L~~s~~frNP~i~ekLi~---~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Q 85 (96)
T PF07818_consen 32 DRLQNSKSFRNPSILEKLIE---FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQ 85 (96)
T ss_pred HHHHHccccCChHHHHHHHH---HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHH
Confidence 45677778777788888864 56776 47777888999999988888888776554
No 53
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.50 E-value=70 Score=31.80 Aligned_cols=45 Identities=18% Similarity=0.509 Sum_probs=37.6
Q ss_pred hccceeEEEeccccCCH-----HhHHHHHHHHHh-cCCCEEEEeccccHHH
Q 011794 149 EFENARVLVTDQKISAI-----KDIIPLLEKTTQ-LRAPLLIIAEDVTGEA 193 (477)
Q Consensus 149 ~~~~~~Ill~~~~i~~~-----~~l~~~l~~i~~-~~~~lvi~~~~i~~~a 193 (477)
-+..|.+++.|.|+.+. .|+++++|.+.+ .+.|++.+.-++++.+
T Consensus 143 LLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 143 LLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred HhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 56889999999998765 479999999876 5899999998887754
No 54
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=27.33 E-value=1.2e+02 Score=26.63 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCcHHHHHHHHhhhhhh
Q 011794 294 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIK 365 (477)
Q Consensus 294 ~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~~~e~~~~~~dal~~~~~~l~~g-vvpGGGa~e~~~s~~L~~~~ 365 (477)
..++..++.+.++|-. .++|++++++-...=++...-.- .|.|.|++-.+.+-+|+..+
T Consensus 69 ~~~~~e~q~kK~KLl~-------------mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 69 PAERQELQRKKAKLLS-------------MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred hhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4466667776666543 47777777777776666665553 78899999888877776544
No 55
>PRK06683 hypothetical protein; Provisional
Probab=25.54 E-value=3e+02 Score=21.70 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceE
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 235 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~ 235 (477)
++.+.+....+||++.|.++....-+..--..-.+++.- -...++|..++|-..
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~----------~~t~~eLG~A~G~~~ 73 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITK----------VESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEE----------ECCHHHHHHHhCCcc
Confidence 455556678999999999998777653211111123321 124568888888653
No 56
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.51 E-value=3e+02 Score=21.75 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceE
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 235 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~ 235 (477)
++.+.+....+||++.|.++.....+..--....+++. .....++|..++|-.+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~----------~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV----------YIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE----------EeCCHHHHHHHHCCcc
Confidence 45555667899999999998877766421111112231 1244568888888653
No 57
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=22.90 E-value=2.3e+02 Score=24.66 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHhCceEec
Q 011794 219 RRKALLQDIAIVTGAEFQA 237 (477)
Q Consensus 219 ~~~~~l~~ia~~tGa~~~~ 237 (477)
.....|++||..+||..+.
T Consensus 140 ~~~~~l~~ia~~~gG~~~~ 158 (171)
T cd01461 140 VNTYLLERLAREGRGIARR 158 (171)
T ss_pred cCHHHHHHHHHcCCCeEEE
Confidence 3467899999999999886
No 58
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.62 E-value=3.9e+02 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEEEeccccHHHHHHH
Q 011794 172 LEKTTQLRAPLLIIAEDVTGEALATL 197 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~al~~l 197 (477)
++.+.+-...+||++.|+++.....+
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHH
Confidence 44555566889999999998765544
No 59
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.52 E-value=2.8e+02 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHhcCCCEEEEeccccHH-HHHHHHHhhhcccceEEEee
Q 011794 172 LEKTTQLRAPLLIIAEDVTGE-ALATLVVNKLRGILNVAAIK 212 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i~~~-al~~l~~n~~~~~~~v~av~ 212 (477)
+|.+.+.+++|||......+. ....|.+.+ +.++.+.
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~g----Ipvv~i~ 99 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLG----IPVLYVN 99 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcC----CCEEEeC
Confidence 678888999999886655443 556665544 3455554
No 60
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase,. This group consists of archealpseudouridine synthases.Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. This group of proteins make Psedouridine in tRNAs.
Probab=21.47 E-value=92 Score=29.55 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhc---hhhhhhcCCCCCCCCCCCCCCCC
Q 011794 437 TRCALQNAASVAGMVLT---TQAIVVEKPKPKTPVAAPPQGLM 476 (477)
Q Consensus 437 k~~al~~A~e~a~~lL~---iD~iI~~~~~~~~~~~~~~~~~~ 476 (477)
.+..+-..+++..--+. ++.++..+.+...+++|||+||+
T Consensus 173 VR~mvg~ll~vg~g~~~~~~i~~~l~~~~~~~~~~~APa~GL~ 215 (221)
T cd02866 173 VRRIVGALSLVGKGKRENEWVDKLLDGEFRKKDGVPAPPEGLI 215 (221)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhCCCcccCCCCCCCCCcE
Confidence 33344444444443344 45556666666667789999996
No 61
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.62 E-value=1.9e+02 Score=24.39 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=31.4
Q ss_pred EEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHH
Q 011794 156 LVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 199 (477)
Q Consensus 156 ll~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~ 199 (477)
.++|++ .++...+.++...+.|+|+|+...+.+++-+..+.+
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 455654 778888889999999999999999999887777655
No 62
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=20.35 E-value=2.6e+02 Score=26.85 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHHHhcCCCEEEEeccc-cHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCc
Q 011794 172 LEKTTQLRAPLLIIAEDV-TGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGA 233 (477)
Q Consensus 172 l~~i~~~~~~lvi~~~~i-~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa 233 (477)
+|++.+.+++|||...+. .......|.+.+ ++++.+....+.++ .+.++.++.++|-
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~g----i~v~~~~~~~~~~~-~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLG----IKVMWVDATSIEQI-ANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCC----CCEEEeCCCCHHHH-HHHHHHHHHHcCC
Confidence 677778888888765432 234445554333 35555543333333 2455566665553
Done!