Query 011796
Match_columns 477
No_of_seqs 359 out of 2037
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.2E-35 2.7E-40 302.8 26.5 168 3-186 105-277 (346)
2 KOG4205 RNA-binding protein mu 100.0 6E-32 1.3E-36 268.8 21.2 235 3-247 4-242 (311)
3 TIGR01645 half-pint poly-U bin 100.0 7.9E-31 1.7E-35 281.1 22.2 180 3-187 105-287 (612)
4 KOG0117 Heterogeneous nuclear 100.0 9.2E-30 2E-34 255.0 25.7 178 5-190 83-337 (506)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.7E-30 8E-35 263.9 21.9 166 4-185 2-172 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 6.4E-30 1.4E-34 271.3 23.0 178 3-184 87-266 (457)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 3.3E-29 7.2E-34 268.2 27.1 175 4-187 57-310 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-29 4.2E-34 258.5 24.0 183 4-186 88-351 (352)
9 KOG0144 RNA-binding protein CU 100.0 6.8E-30 1.5E-34 254.8 12.6 174 2-191 31-213 (510)
10 KOG0148 Apoptosis-promoting RN 100.0 2.3E-28 5E-33 231.5 17.1 176 5-186 62-240 (321)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-27 2.4E-32 260.8 20.0 182 4-187 177-367 (562)
12 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-27 2.7E-32 260.3 20.1 165 7-186 2-169 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.1E-26 4.5E-31 247.6 21.8 178 2-185 172-376 (509)
14 KOG0127 Nucleolar protein fibr 99.9 2.4E-26 5.3E-31 234.9 17.2 181 5-186 117-380 (678)
15 KOG0145 RNA-binding protein EL 99.9 1.5E-26 3.2E-31 217.9 14.2 169 2-186 38-211 (360)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-25 5.4E-30 237.8 21.6 175 3-184 273-480 (481)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.5E-25 7.5E-30 236.7 21.2 168 4-185 1-175 (481)
18 KOG0127 Nucleolar protein fibr 99.9 1.5E-25 3.2E-30 229.2 16.4 186 1-187 1-199 (678)
19 KOG0131 Splicing factor 3b, su 99.9 8.2E-26 1.8E-30 203.3 12.4 169 4-187 8-180 (203)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.4E-25 1.6E-29 235.6 21.0 181 4-184 294-502 (509)
21 KOG0109 RNA-binding protein LA 99.9 1.1E-24 2.3E-29 208.5 10.8 146 6-185 3-151 (346)
22 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-22 2.7E-27 215.5 21.1 176 5-184 186-448 (457)
23 KOG4211 Splicing factor hnRNP- 99.9 8.8E-21 1.9E-25 193.1 28.6 175 4-187 9-185 (510)
24 KOG0145 RNA-binding protein EL 99.9 2.7E-22 5.9E-27 189.2 15.4 180 5-184 127-358 (360)
25 KOG0124 Polypyrimidine tract-b 99.9 4.6E-23 1E-27 202.0 8.1 175 5-185 113-291 (544)
26 KOG0147 Transcriptional coacti 99.9 8.4E-23 1.8E-27 210.3 7.6 182 2-185 176-359 (549)
27 KOG0123 Polyadenylate-binding 99.9 1.5E-21 3.3E-26 200.5 16.8 155 6-190 2-159 (369)
28 KOG0110 RNA-binding protein (R 99.9 1.8E-21 3.8E-26 205.3 12.8 175 4-185 514-694 (725)
29 KOG0146 RNA-binding protein ET 99.8 4.8E-21 1E-25 181.4 11.3 184 4-188 18-369 (371)
30 KOG0123 Polyadenylate-binding 99.8 1.2E-19 2.6E-24 186.5 15.4 170 3-184 74-246 (369)
31 KOG0148 Apoptosis-promoting RN 99.8 4.2E-20 9.1E-25 175.5 10.2 140 2-185 3-143 (321)
32 KOG0144 RNA-binding protein CU 99.8 9.4E-20 2E-24 182.6 11.0 181 4-185 123-505 (510)
33 TIGR01645 half-pint poly-U bin 99.8 6.4E-18 1.4E-22 182.0 20.5 79 4-82 203-283 (612)
34 PLN03134 glycine-rich RNA-bind 99.8 4E-18 8.6E-23 153.5 15.0 84 103-186 32-116 (144)
35 KOG4212 RNA-binding protein hn 99.8 1.2E-17 2.7E-22 167.4 18.5 177 3-182 42-292 (608)
36 KOG0105 Alternative splicing f 99.8 3.3E-17 7.1E-22 148.1 17.3 168 3-180 4-186 (241)
37 PLN03134 glycine-rich RNA-bind 99.7 1.6E-17 3.5E-22 149.6 11.2 83 3-85 32-116 (144)
38 KOG0113 U1 small nuclear ribon 99.7 8.1E-18 1.7E-22 162.1 5.7 101 101-201 97-198 (335)
39 KOG0106 Alternative splicing f 99.7 3.9E-17 8.5E-22 154.0 7.8 160 6-181 2-168 (216)
40 KOG4206 Spliceosomal protein s 99.7 6.6E-16 1.4E-20 144.5 15.8 171 4-182 8-220 (221)
41 KOG0147 Transcriptional coacti 99.7 1.9E-16 4.2E-21 163.6 13.0 172 6-182 279-526 (549)
42 KOG0149 Predicted RNA-binding 99.6 2E-16 4.3E-21 148.4 7.5 80 3-82 10-90 (247)
43 COG0724 RNA-binding proteins ( 99.6 1.8E-15 3.9E-20 146.1 13.4 160 5-164 115-284 (306)
44 KOG0110 RNA-binding protein (R 99.6 1.8E-15 4E-20 160.2 13.8 174 3-182 383-596 (725)
45 TIGR01659 sex-lethal sex-letha 99.6 3.1E-15 6.8E-20 153.1 11.1 85 101-185 103-188 (346)
46 KOG0149 Predicted RNA-binding 99.6 1.3E-15 2.8E-20 143.0 7.2 80 104-183 11-90 (247)
47 KOG4211 Splicing factor hnRNP- 99.6 6.5E-14 1.4E-18 143.3 19.8 177 4-183 102-357 (510)
48 KOG1365 RNA-binding protein Fu 99.6 1.6E-15 3.4E-20 150.3 7.7 182 3-186 159-364 (508)
49 TIGR01648 hnRNP-R-Q heterogene 99.6 6.7E-15 1.5E-19 158.5 11.3 119 5-131 233-367 (578)
50 KOG1548 Transcription elongati 99.6 7.2E-14 1.6E-18 137.4 16.2 176 4-184 133-352 (382)
51 PF00076 RRM_1: RNA recognitio 99.5 2.5E-14 5.3E-19 111.4 8.8 68 8-76 1-70 (70)
52 PF00076 RRM_1: RNA recognitio 99.5 4.1E-14 8.8E-19 110.1 9.0 69 108-177 1-70 (70)
53 KOG0122 Translation initiation 99.5 3.4E-14 7.4E-19 133.9 9.2 81 3-83 187-269 (270)
54 KOG0129 Predicted RNA-binding 99.5 1.4E-13 3E-18 141.8 14.3 177 4-182 258-452 (520)
55 KOG0122 Translation initiation 99.5 5.8E-14 1.3E-18 132.4 9.6 82 103-184 187-269 (270)
56 KOG0120 Splicing factor U2AF, 99.5 7.5E-14 1.6E-18 146.1 11.4 181 3-183 287-491 (500)
57 KOG0125 Ataxin 2-binding prote 99.5 5.8E-14 1.3E-18 137.1 9.7 87 100-188 91-178 (376)
58 PF14259 RRM_6: RNA recognitio 99.5 9.8E-14 2.1E-18 108.8 8.6 68 8-76 1-70 (70)
59 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3E-18 107.9 9.0 69 108-177 1-70 (70)
60 PLN03120 nucleic acid binding 99.5 1.3E-13 2.7E-18 133.6 10.5 77 4-83 3-80 (260)
61 KOG1190 Polypyrimidine tract-b 99.5 1.2E-12 2.5E-17 131.2 16.7 170 5-183 297-490 (492)
62 KOG4207 Predicted splicing fac 99.5 4.5E-14 9.8E-19 130.0 6.1 84 99-182 7-91 (256)
63 PLN03121 nucleic acid binding 99.5 5.5E-13 1.2E-17 127.3 12.2 80 1-83 1-81 (243)
64 PLN03120 nucleic acid binding 99.4 4.2E-13 9E-18 130.0 10.8 79 105-186 4-82 (260)
65 KOG1457 RNA binding protein (c 99.4 1.5E-12 3.3E-17 121.2 14.0 160 5-168 34-269 (284)
66 KOG0121 Nuclear cap-binding pr 99.4 3E-13 6.5E-18 115.9 7.3 81 103-183 34-115 (153)
67 PLN03213 repressor of silencin 99.4 2.4E-13 5.2E-18 138.6 7.7 76 4-83 9-88 (759)
68 KOG0113 U1 small nuclear ribon 99.4 5.4E-13 1.2E-17 129.0 9.4 87 2-88 98-186 (335)
69 KOG0121 Nuclear cap-binding pr 99.4 3.7E-13 7.9E-18 115.4 7.1 80 3-82 34-115 (153)
70 KOG0108 mRNA cleavage and poly 99.4 2E-13 4.4E-18 142.1 6.5 80 6-85 19-100 (435)
71 KOG0124 Polypyrimidine tract-b 99.4 4E-12 8.6E-17 125.6 14.6 178 4-181 209-532 (544)
72 COG0724 RNA-binding proteins ( 99.4 1.6E-12 3.5E-17 125.4 10.4 79 105-183 115-194 (306)
73 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 4.9E-17 99.2 9.0 70 7-78 1-72 (72)
74 KOG4207 Predicted splicing fac 99.4 5.3E-13 1.2E-17 123.0 6.0 80 3-82 11-92 (256)
75 KOG4212 RNA-binding protein hn 99.4 1.1E-11 2.4E-16 125.1 15.4 71 106-181 537-608 (608)
76 smart00362 RRM_2 RNA recogniti 99.4 3.8E-12 8.2E-17 98.0 9.2 71 107-179 1-72 (72)
77 KOG0107 Alternative splicing f 99.4 1.6E-12 3.4E-17 117.2 7.7 76 104-184 9-85 (195)
78 smart00360 RRM RNA recognition 99.4 3E-12 6.5E-17 98.1 8.3 69 10-78 1-71 (71)
79 smart00360 RRM RNA recognition 99.4 3.9E-12 8.4E-17 97.5 8.8 70 110-179 1-71 (71)
80 KOG0117 Heterogeneous nuclear 99.3 5.8E-12 1.3E-16 127.6 11.7 120 54-182 41-162 (506)
81 KOG0111 Cyclophilin-type pepti 99.3 1.2E-12 2.6E-17 121.6 5.8 85 1-85 6-92 (298)
82 KOG0111 Cyclophilin-type pepti 99.3 1.2E-12 2.6E-17 121.5 5.6 87 103-189 8-95 (298)
83 KOG0107 Alternative splicing f 99.3 2.7E-12 5.9E-17 115.7 7.7 76 4-84 9-86 (195)
84 PLN03213 repressor of silencin 99.3 3.3E-12 7.1E-17 130.4 9.2 78 103-184 8-88 (759)
85 KOG0125 Ataxin 2-binding prote 99.3 2.6E-12 5.6E-17 125.7 7.8 79 4-84 95-175 (376)
86 KOG1190 Polypyrimidine tract-b 99.3 5.1E-11 1.1E-15 119.6 16.9 171 7-187 152-376 (492)
87 KOG0120 Splicing factor U2AF, 99.3 3.7E-12 7.9E-17 133.5 9.1 181 2-188 172-373 (500)
88 PLN03121 nucleic acid binding 99.3 1.2E-11 2.5E-16 118.3 10.7 80 104-186 4-83 (243)
89 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.7E-16 94.2 9.9 73 107-180 1-74 (74)
90 KOG0114 Predicted RNA-binding 99.3 1.9E-11 4.2E-16 101.2 9.3 81 102-185 15-96 (124)
91 cd00590 RRM RRM (RNA recogniti 99.3 2.5E-11 5.4E-16 93.9 9.6 72 7-79 1-74 (74)
92 KOG0126 Predicted RNA-binding 99.3 7.1E-13 1.5E-17 119.9 0.6 80 3-82 33-114 (219)
93 KOG0131 Splicing factor 3b, su 99.3 5.6E-12 1.2E-16 114.4 6.1 80 103-182 7-87 (203)
94 KOG1365 RNA-binding protein Fu 99.3 1.2E-11 2.6E-16 123.1 8.7 178 3-181 58-240 (508)
95 KOG0105 Alternative splicing f 99.2 2.6E-11 5.6E-16 110.1 9.2 76 104-182 5-81 (241)
96 KOG0130 RNA-binding protein RB 99.2 1E-11 2.2E-16 107.4 6.2 79 7-85 74-154 (170)
97 KOG0130 RNA-binding protein RB 99.2 1.7E-11 3.6E-16 106.1 7.0 84 103-186 70-154 (170)
98 KOG4205 RNA-binding protein mu 99.2 9.7E-12 2.1E-16 124.5 5.6 89 104-192 5-93 (311)
99 KOG1456 Heterogeneous nuclear 99.2 1.4E-10 3.1E-15 115.1 12.5 162 5-186 31-201 (494)
100 KOG0128 RNA-binding protein SA 99.2 9.2E-13 2E-17 142.3 -3.2 152 3-187 665-818 (881)
101 KOG0114 Predicted RNA-binding 99.2 6.8E-11 1.5E-15 98.0 8.3 81 3-86 16-98 (124)
102 KOG0126 Predicted RNA-binding 99.2 3.5E-12 7.6E-17 115.5 0.7 79 104-182 34-113 (219)
103 KOG0108 mRNA cleavage and poly 99.2 3.8E-11 8.2E-16 125.2 8.2 80 106-185 19-99 (435)
104 KOG4210 Nuclear localization s 99.2 2E-11 4.3E-16 121.7 5.7 177 4-186 87-266 (285)
105 KOG4454 RNA binding protein (R 99.1 8.2E-12 1.8E-16 116.1 0.1 147 3-177 7-156 (267)
106 KOG1456 Heterogeneous nuclear 99.1 1.6E-09 3.5E-14 107.7 16.2 174 4-184 286-491 (494)
107 smart00361 RRM_1 RNA recogniti 99.1 2.4E-10 5.3E-15 90.0 8.4 60 119-178 2-69 (70)
108 KOG0415 Predicted peptidyl pro 99.1 1.2E-10 2.6E-15 115.0 6.5 85 102-186 236-321 (479)
109 smart00361 RRM_1 RNA recogniti 99.1 3.8E-10 8.1E-15 89.0 7.7 59 19-77 2-69 (70)
110 KOG0116 RasGAP SH3 binding pro 99.1 1.3E-09 2.9E-14 113.1 12.9 80 106-185 289-368 (419)
111 PF13893 RRM_5: RNA recognitio 99.1 5.9E-10 1.3E-14 83.7 7.5 55 122-181 1-56 (56)
112 KOG0109 RNA-binding protein LA 99.0 2.7E-10 5.8E-15 110.1 6.3 72 106-185 3-75 (346)
113 PF13893 RRM_5: RNA recognitio 99.0 1.7E-09 3.7E-14 81.2 7.6 54 22-80 1-56 (56)
114 KOG0146 RNA-binding protein ET 99.0 5.2E-10 1.1E-14 106.9 4.9 83 3-85 283-367 (371)
115 KOG0415 Predicted peptidyl pro 98.9 1.1E-09 2.4E-14 108.2 6.3 83 2-84 236-320 (479)
116 KOG0226 RNA-binding proteins [ 98.9 5.5E-10 1.2E-14 106.3 3.2 166 8-184 99-270 (290)
117 KOG0132 RNA polymerase II C-te 98.9 3.6E-09 7.9E-14 113.6 8.1 107 5-128 421-529 (894)
118 KOG0112 Large RNA-binding prot 98.9 1.5E-09 3.3E-14 118.2 4.2 159 3-186 370-533 (975)
119 KOG0132 RNA polymerase II C-te 98.8 1E-08 2.2E-13 110.3 8.7 80 103-188 419-499 (894)
120 KOG4208 Nucleolar RNA-binding 98.8 3.8E-08 8.1E-13 91.4 10.3 80 4-83 48-130 (214)
121 KOG0153 Predicted RNA-binding 98.8 2.7E-08 5.9E-13 98.6 9.5 81 99-185 222-304 (377)
122 KOG0153 Predicted RNA-binding 98.7 2.1E-08 4.5E-13 99.4 7.6 74 3-82 226-302 (377)
123 KOG4307 RNA binding protein RB 98.7 2E-08 4.3E-13 106.7 7.6 178 2-181 308-511 (944)
124 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.8E-08 8.2E-13 102.5 7.7 78 106-183 406-484 (940)
125 KOG0533 RRM motif-containing p 98.7 6.3E-08 1.4E-12 93.8 8.8 84 103-187 81-165 (243)
126 KOG4208 Nucleolar RNA-binding 98.7 7.9E-08 1.7E-12 89.3 8.5 82 103-184 47-130 (214)
127 KOG0116 RasGAP SH3 binding pro 98.7 4.1E-08 8.9E-13 102.1 7.4 80 4-83 287-367 (419)
128 KOG4206 Spliceosomal protein s 98.6 7.1E-08 1.5E-12 90.9 7.8 80 104-186 8-92 (221)
129 KOG4661 Hsp27-ERE-TATA-binding 98.6 7E-08 1.5E-12 100.5 7.4 78 5-82 405-484 (940)
130 PF04059 RRM_2: RNA recognitio 98.6 3.5E-07 7.6E-12 76.5 9.1 81 5-85 1-89 (97)
131 KOG0533 RRM motif-containing p 98.6 2.1E-07 4.5E-12 90.2 8.7 82 3-85 81-164 (243)
132 KOG4209 Splicing factor RNPS1, 98.5 1.3E-07 2.9E-12 91.5 6.9 83 102-184 98-180 (231)
133 KOG4454 RNA binding protein (R 98.5 4.5E-08 9.8E-13 91.5 3.3 78 103-182 7-85 (267)
134 KOG4660 Protein Mei2, essentia 98.5 8.7E-08 1.9E-12 100.3 4.9 169 3-183 73-249 (549)
135 KOG4307 RNA binding protein RB 98.4 3.9E-06 8.5E-11 89.7 14.8 75 5-80 434-511 (944)
136 KOG4209 Splicing factor RNPS1, 98.4 2.7E-07 6E-12 89.3 5.7 82 2-83 98-180 (231)
137 KOG2193 IGF-II mRNA-binding pr 98.4 4E-08 8.8E-13 99.3 -0.6 148 6-181 2-154 (584)
138 KOG1995 Conserved Zn-finger pr 98.4 1E-06 2.2E-11 88.2 8.5 84 102-185 63-155 (351)
139 KOG4676 Splicing factor, argin 98.4 2.4E-07 5.3E-12 93.0 4.1 165 4-172 6-214 (479)
140 KOG1548 Transcription elongati 98.3 1.7E-06 3.7E-11 86.0 9.1 80 102-182 131-219 (382)
141 KOG0106 Alternative splicing f 98.3 5.6E-07 1.2E-11 85.5 5.0 72 106-185 2-74 (216)
142 KOG0226 RNA-binding proteins [ 98.3 5.9E-07 1.3E-11 85.9 4.0 82 2-83 187-270 (290)
143 KOG0128 RNA-binding protein SA 98.2 8E-08 1.7E-12 104.7 -3.0 163 5-173 571-735 (881)
144 PF04059 RRM_2: RNA recognitio 98.2 6.5E-06 1.4E-10 68.9 9.0 78 106-183 2-86 (97)
145 KOG1457 RNA binding protein (c 98.1 1.8E-05 3.9E-10 74.5 10.2 86 102-187 31-121 (284)
146 KOG4660 Protein Mei2, essentia 98.1 2E-06 4.3E-11 90.3 4.3 70 103-177 73-143 (549)
147 KOG1995 Conserved Zn-finger pr 97.9 1.1E-05 2.5E-10 80.8 4.2 83 3-85 64-156 (351)
148 KOG0151 Predicted splicing reg 97.9 2.1E-05 4.5E-10 84.6 6.2 83 102-184 171-257 (877)
149 PF08777 RRM_3: RNA binding mo 97.9 3.9E-05 8.5E-10 65.4 6.6 68 6-79 2-76 (105)
150 KOG0151 Predicted splicing reg 97.8 3E-05 6.6E-10 83.3 6.9 80 4-83 173-257 (877)
151 PF08777 RRM_3: RNA binding mo 97.8 3.9E-05 8.5E-10 65.4 5.5 68 107-180 3-76 (105)
152 KOG1855 Predicted RNA-binding 97.8 1.4E-05 3.1E-10 81.5 3.2 68 102-169 228-308 (484)
153 KOG4210 Nuclear localization s 97.6 3.9E-05 8.3E-10 76.8 3.1 80 6-85 185-266 (285)
154 PF11608 Limkain-b1: Limkain b 97.6 0.00028 6.1E-09 56.9 7.2 68 5-82 2-76 (90)
155 KOG4849 mRNA cleavage factor I 97.5 6.1E-05 1.3E-09 75.0 2.9 77 104-180 79-158 (498)
156 KOG4849 mRNA cleavage factor I 97.5 9E-05 2E-09 73.8 3.7 76 6-81 81-160 (498)
157 PF11608 Limkain-b1: Limkain b 97.4 0.00036 7.8E-09 56.3 5.3 67 106-182 3-75 (90)
158 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00044 9.5E-09 51.4 5.4 52 6-64 2-53 (53)
159 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00038 8.3E-09 51.7 4.9 52 106-164 2-53 (53)
160 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0011 2.3E-08 56.0 6.8 80 3-83 4-92 (100)
161 COG5175 MOT2 Transcriptional r 97.2 0.00087 1.9E-08 66.7 6.7 80 104-183 113-202 (480)
162 KOG0129 Predicted RNA-binding 97.1 0.0011 2.4E-08 69.6 7.6 62 3-64 368-430 (520)
163 KOG2591 c-Mpl binding protein, 97.0 0.0011 2.4E-08 69.9 6.1 70 104-180 174-248 (684)
164 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0038 8.2E-08 52.7 6.7 78 104-182 5-90 (100)
165 KOG0115 RNA-binding protein p5 96.8 0.0023 5.1E-08 61.8 5.9 94 65-182 14-112 (275)
166 KOG1855 Predicted RNA-binding 96.8 0.0011 2.4E-08 68.1 3.8 62 3-64 229-303 (484)
167 KOG2314 Translation initiation 96.8 0.0011 2.3E-08 70.1 3.8 74 5-79 58-140 (698)
168 KOG0921 Dosage compensation co 96.7 0.033 7.1E-07 62.5 14.3 6 162-167 1103-1108(1282)
169 KOG0921 Dosage compensation co 96.6 0.017 3.7E-07 64.7 11.4 17 237-253 1180-1196(1282)
170 PF10309 DUF2414: Protein of u 96.4 0.013 2.7E-07 45.0 6.6 56 104-167 4-62 (62)
171 COG5175 MOT2 Transcriptional r 96.4 0.0068 1.5E-07 60.5 6.4 78 6-83 115-203 (480)
172 KOG2202 U2 snRNP splicing fact 96.4 0.0023 5E-08 61.8 2.9 65 20-85 83-150 (260)
173 KOG3152 TBP-binding protein, a 96.3 0.0029 6.4E-08 61.1 2.9 71 4-74 73-157 (278)
174 KOG1996 mRNA splicing factor [ 96.2 0.012 2.7E-07 57.8 6.8 77 106-182 282-365 (378)
175 KOG1996 mRNA splicing factor [ 96.2 0.012 2.5E-07 58.0 6.4 64 18-81 299-365 (378)
176 KOG2135 Proteins containing th 96.1 0.0041 8.8E-08 64.7 3.4 72 107-184 374-446 (526)
177 PF08952 DUF1866: Domain of un 96.1 0.015 3.3E-07 52.0 6.6 56 121-184 52-107 (146)
178 KOG2202 U2 snRNP splicing fact 96.1 0.0024 5.2E-08 61.7 1.4 62 120-182 83-146 (260)
179 PF10567 Nab6_mRNP_bdg: RNA-re 96.1 0.1 2.2E-06 51.7 12.5 164 5-168 15-212 (309)
180 KOG4676 Splicing factor, argin 96.1 0.0065 1.4E-07 61.9 4.3 76 106-181 8-86 (479)
181 KOG2591 c-Mpl binding protein, 96.0 0.0093 2E-07 63.2 5.5 71 3-80 173-249 (684)
182 PF08952 DUF1866: Domain of un 96.0 0.024 5.2E-07 50.8 7.0 57 21-85 52-109 (146)
183 KOG2314 Translation initiation 95.9 0.026 5.6E-07 60.0 8.2 75 105-180 58-140 (698)
184 PF10309 DUF2414: Protein of u 95.9 0.033 7.2E-07 42.7 6.5 52 5-64 5-59 (62)
185 KOG2135 Proteins containing th 95.8 0.0053 1.2E-07 63.9 2.4 79 1-85 368-448 (526)
186 KOG3152 TBP-binding protein, a 95.0 0.031 6.7E-07 54.2 4.6 72 104-175 73-157 (278)
187 KOG2416 Acinus (induces apopto 94.9 0.025 5.4E-07 60.5 4.0 78 101-184 440-522 (718)
188 PF07292 NID: Nmi/IFP 35 domai 94.9 0.019 4.1E-07 47.2 2.5 69 50-127 1-74 (88)
189 KOG2193 IGF-II mRNA-binding pr 94.9 0.017 3.8E-07 59.3 2.7 76 106-187 2-79 (584)
190 KOG2318 Uncharacterized conser 94.8 0.085 1.8E-06 56.5 7.7 126 2-180 171-302 (650)
191 PF08675 RNA_bind: RNA binding 94.8 0.088 1.9E-06 42.7 6.0 56 104-168 8-63 (87)
192 KOG2253 U1 snRNP complex, subu 94.8 0.016 3.5E-07 62.7 2.3 117 4-129 39-159 (668)
193 PF08675 RNA_bind: RNA binding 94.7 0.066 1.4E-06 43.4 4.9 51 5-64 9-59 (87)
194 KOG0115 RNA-binding protein p5 94.5 0.033 7.2E-07 54.0 3.4 74 6-80 32-111 (275)
195 PF15023 DUF4523: Protein of u 94.3 0.21 4.5E-06 44.6 7.6 73 2-81 83-160 (166)
196 KOG0112 Large RNA-binding prot 94.1 0.017 3.7E-07 64.4 0.6 82 99-181 366-448 (975)
197 PF15023 DUF4523: Protein of u 93.7 0.27 5.8E-06 43.9 7.1 74 102-182 83-160 (166)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.052 1.1E-06 50.6 2.8 68 3-70 5-80 (176)
199 PF07576 BRAP2: BRCA1-associat 93.0 1.6 3.4E-05 37.6 10.7 76 104-181 12-92 (110)
200 KOG4285 Mitotic phosphoprotein 92.9 0.45 9.7E-06 47.4 8.2 74 108-188 200-274 (350)
201 KOG4285 Mitotic phosphoprotein 92.9 0.42 9E-06 47.6 7.9 77 5-88 197-275 (350)
202 KOG2068 MOT2 transcription fac 92.3 0.054 1.2E-06 54.5 1.0 83 103-185 75-164 (327)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.092 2E-06 49.0 2.4 79 104-182 6-96 (176)
204 KOG2416 Acinus (induces apopto 92.2 0.11 2.5E-06 55.7 3.2 74 4-83 443-522 (718)
205 PF07576 BRAP2: BRCA1-associat 90.3 1.9 4.1E-05 37.0 8.4 63 6-70 14-79 (110)
206 KOG4213 RNA-binding protein La 90.3 0.11 2.4E-06 47.9 0.7 70 105-178 111-181 (205)
207 PF14111 DUF4283: Domain of un 89.8 0.34 7.4E-06 43.3 3.6 110 16-140 28-140 (153)
208 KOG0804 Cytoplasmic Zn-finger 89.4 1 2.2E-05 47.2 7.1 66 4-71 73-141 (493)
209 PF04847 Calcipressin: Calcipr 89.3 0.84 1.8E-05 42.9 5.9 61 118-184 8-71 (184)
210 KOG4574 RNA-binding protein (c 89.3 0.28 6.2E-06 54.7 3.1 78 107-190 300-380 (1007)
211 KOG4483 Uncharacterized conser 88.6 1.5 3.2E-05 45.4 7.4 66 104-176 390-456 (528)
212 PF11767 SET_assoc: Histone ly 88.1 1.8 3.9E-05 33.7 5.9 53 16-77 11-65 (66)
213 KOG2068 MOT2 transcription fac 87.4 0.23 5.1E-06 50.1 0.9 80 6-85 78-165 (327)
214 PF04847 Calcipressin: Calcipr 87.0 1.4 3E-05 41.4 5.7 61 17-83 7-71 (184)
215 COG5594 Uncharacterized integr 86.9 0.1 2.3E-06 58.2 -2.0 36 3-38 206-244 (827)
216 PF03880 DbpA: DbpA RNA bindin 86.4 2.4 5.3E-05 33.4 6.1 58 115-181 11-74 (74)
217 KOG4410 5-formyltetrahydrofola 86.2 3.9 8.5E-05 40.5 8.5 55 106-166 331-393 (396)
218 KOG2253 U1 snRNP complex, subu 85.6 0.56 1.2E-05 51.2 2.7 70 103-181 38-108 (668)
219 PF07530 PRE_C2HC: Associated 84.5 1.6 3.4E-05 34.2 4.1 63 20-83 2-65 (68)
220 smart00596 PRE_C2HC PRE_C2HC d 84.3 1.3 2.9E-05 34.6 3.5 64 20-84 2-66 (69)
221 PF03880 DbpA: DbpA RNA bindin 82.9 7.2 0.00016 30.7 7.4 55 17-80 13-74 (74)
222 KOG0804 Cytoplasmic Zn-finger 80.7 4.9 0.00011 42.3 7.0 65 105-171 74-140 (493)
223 PF11767 SET_assoc: Histone ly 80.4 7.6 0.00016 30.2 6.4 53 116-177 11-64 (66)
224 KOG4483 Uncharacterized conser 80.3 2.9 6.4E-05 43.2 5.2 57 5-68 391-448 (528)
225 TIGR02542 B_forsyth_147 Bacter 77.0 5 0.00011 34.6 4.8 114 13-157 11-129 (145)
226 PF03468 XS: XS domain; Inter 76.0 4.3 9.3E-05 35.2 4.4 55 7-64 10-74 (116)
227 COG5638 Uncharacterized conser 75.9 8.7 0.00019 40.0 7.1 37 4-40 145-186 (622)
228 PF07530 PRE_C2HC: Associated 74.6 7 0.00015 30.5 4.8 62 120-184 2-65 (68)
229 KOG4574 RNA-binding protein (c 72.8 2.4 5.2E-05 47.7 2.4 73 5-83 298-374 (1007)
230 PF10567 Nab6_mRNP_bdg: RNA-re 71.4 10 0.00022 38.0 6.1 80 103-182 13-106 (309)
231 PRK11634 ATP-dependent RNA hel 71.3 50 0.0011 37.1 12.4 62 114-184 496-563 (629)
232 smart00596 PRE_C2HC PRE_C2HC d 71.1 7.7 0.00017 30.4 4.2 60 120-182 2-63 (69)
233 PF03468 XS: XS domain; Inter 70.5 4.7 0.0001 34.9 3.3 46 118-166 30-76 (116)
234 PF02714 DUF221: Domain of unk 65.0 9.2 0.0002 38.7 4.7 36 50-85 1-36 (325)
235 KOG3973 Uncharacterized conser 60.2 95 0.0021 32.0 10.5 6 121-126 244-249 (465)
236 KOG4213 RNA-binding protein La 59.7 8.4 0.00018 35.8 2.9 65 6-75 112-179 (205)
237 KOG2891 Surface glycoprotein [ 58.5 26 0.00057 34.7 6.2 37 103-139 147-195 (445)
238 TIGR02515 IV_pilus_PilQ type I 57.6 18 0.00038 38.4 5.4 141 16-168 7-162 (418)
239 COG5193 LHP1 La protein, small 56.3 5.9 0.00013 41.1 1.5 61 105-165 174-244 (438)
240 PRK14548 50S ribosomal protein 56.2 35 0.00076 27.8 5.7 57 108-167 23-81 (84)
241 PF14026 DUF4242: Protein of u 55.6 1E+02 0.0023 24.5 8.7 59 108-168 3-68 (77)
242 TIGR03636 L23_arch archaeal ri 53.6 45 0.00097 26.8 5.8 57 108-167 16-74 (77)
243 PF07292 NID: Nmi/IFP 35 domai 53.4 17 0.00037 29.9 3.4 31 150-180 1-33 (88)
244 COG5193 LHP1 La protein, small 49.9 6.8 0.00015 40.7 0.7 60 5-64 174-243 (438)
245 KOG4008 rRNA processing protei 49.8 12 0.00027 36.2 2.3 36 1-36 36-71 (261)
246 PF02714 DUF221: Domain of unk 48.2 20 0.00043 36.3 3.8 37 150-187 1-37 (325)
247 PF00403 HMA: Heavy-metal-asso 47.1 85 0.0019 23.1 6.3 56 107-168 1-60 (62)
248 KOG4019 Calcineurin-mediated s 46.7 15 0.00033 34.2 2.4 73 107-185 12-91 (193)
249 KOG3262 H/ACA small nucleolar 46.5 62 0.0013 30.3 6.3 23 118-140 87-109 (215)
250 PF14893 PNMA: PNMA 46.3 17 0.00038 37.3 3.0 53 3-57 16-72 (331)
251 PF04278 Tic22: Tic22-like fam 46.0 2E+02 0.0044 28.7 10.5 141 16-169 62-223 (274)
252 PHA00019 IV phage assembly pro 43.6 1.3E+02 0.0028 32.0 9.3 30 13-42 24-53 (428)
253 COG5353 Uncharacterized protei 43.3 85 0.0019 28.4 6.4 59 3-61 85-156 (161)
254 PF08002 DUF1697: Protein of u 42.4 64 0.0014 28.6 5.7 123 6-138 4-132 (137)
255 KOG2891 Surface glycoprotein [ 41.6 19 0.00042 35.7 2.3 48 5-52 149-213 (445)
256 KOG4019 Calcineurin-mediated s 40.6 25 0.00055 32.8 2.8 73 6-84 11-91 (193)
257 PRK06369 nac nascent polypepti 40.5 73 0.0016 27.6 5.5 32 115-170 73-104 (115)
258 KOG2854 Possible pfkB family c 40.4 1E+02 0.0022 31.7 7.3 37 4-40 80-116 (343)
259 PF08734 GYD: GYD domain; Int 40.3 1.4E+02 0.003 24.5 7.0 42 19-64 22-64 (91)
260 cd06405 PB1_Mekk2_3 The PB1 do 39.8 2E+02 0.0042 23.1 7.7 62 112-181 15-77 (79)
261 PF14026 DUF4242: Protein of u 36.7 2.2E+02 0.0047 22.7 7.9 55 8-64 3-64 (77)
262 KOG4365 Uncharacterized conser 36.1 8.9 0.00019 40.3 -0.9 75 5-80 3-79 (572)
263 PRK11901 hypothetical protein; 34.2 57 0.0012 33.3 4.5 54 116-171 253-308 (327)
264 KOG2295 C2H2 Zn-finger protein 34.0 7.5 0.00016 42.0 -1.9 66 103-168 229-294 (648)
265 PTZ00191 60S ribosomal protein 33.6 3.6E+02 0.0079 24.4 10.0 54 108-164 84-139 (145)
266 PRK10560 hofQ outer membrane p 33.2 1.2E+02 0.0027 31.6 7.0 61 18-81 3-69 (386)
267 TIGR03636 L23_arch archaeal ri 33.1 95 0.0021 24.9 4.7 55 7-64 15-71 (77)
268 cd00874 RNA_Cyclase_Class_II R 31.4 1.7E+02 0.0037 30.1 7.5 47 107-154 188-237 (326)
269 COG4010 Uncharacterized protei 30.7 1.1E+02 0.0024 27.5 5.1 47 112-168 118-164 (170)
270 KOG3424 40S ribosomal protein 30.0 1.3E+02 0.0028 26.2 5.2 46 16-62 34-84 (132)
271 PF01071 GARS_A: Phosphoribosy 29.9 1.3E+02 0.0028 28.5 5.9 62 17-82 24-90 (194)
272 PRK14548 50S ribosomal protein 29.7 1.1E+02 0.0024 25.0 4.6 54 8-64 23-78 (84)
273 PF12687 DUF3801: Protein of u 29.6 1.3E+02 0.0027 28.8 5.8 51 116-168 38-91 (204)
274 PF11411 DNA_ligase_IV: DNA li 28.6 40 0.00087 23.0 1.6 16 15-30 19-34 (36)
275 COG4874 Uncharacterized protei 28.4 1.5E+02 0.0031 29.3 5.9 129 1-138 154-296 (318)
276 PRK08279 long-chain-acyl-CoA s 27.9 6.8E+02 0.015 27.2 12.1 121 6-163 463-594 (600)
277 PRK10629 EnvZ/OmpR regulon mod 27.8 3E+02 0.0066 24.2 7.5 57 117-181 50-108 (127)
278 cd06398 PB1_Joka2 The PB1 doma 27.5 2.8E+02 0.006 22.9 6.8 15 50-64 56-70 (91)
279 PF07876 Dabb: Stress responsi 27.2 3E+02 0.0064 22.0 7.0 56 109-164 5-71 (97)
280 PF15513 DUF4651: Domain of un 26.8 1.2E+02 0.0026 23.3 4.0 19 19-37 8-26 (62)
281 PRK13016 dihydroxy-acid dehydr 26.4 1.8E+02 0.0039 32.2 6.9 66 105-185 378-444 (577)
282 PF00403 HMA: Heavy-metal-asso 25.2 2.7E+02 0.0059 20.2 6.6 52 7-64 1-56 (62)
283 KOG0156 Cytochrome P450 CYP2 s 24.8 91 0.002 33.9 4.4 58 9-75 36-97 (489)
284 PF14893 PNMA: PNMA 24.7 63 0.0014 33.2 3.0 26 103-128 16-41 (331)
285 KOG4410 5-formyltetrahydrofola 24.5 88 0.0019 31.3 3.7 49 5-58 330-378 (396)
286 PF14111 DUF4283: Domain of un 23.9 24 0.00053 31.2 -0.2 38 148-185 56-93 (153)
287 PRK01178 rps24e 30S ribosomal 23.8 2.4E+02 0.0052 23.8 5.7 47 16-63 30-81 (99)
288 PF08206 OB_RNB: Ribonuclease 23.0 24 0.00053 26.3 -0.3 37 146-182 7-44 (58)
289 TIGR03599 YloV DAK2 domain fus 22.9 1E+03 0.023 26.1 13.5 53 6-64 226-278 (530)
290 KOG4365 Uncharacterized conser 22.7 19 0.00042 37.9 -1.2 76 106-182 4-80 (572)
291 KOG4008 rRNA processing protei 22.7 59 0.0013 31.7 2.1 33 103-135 38-70 (261)
292 PRK06131 dihydroxy-acid dehydr 22.7 2.4E+02 0.0052 31.3 7.0 67 104-185 372-439 (571)
293 COG0351 ThiD Hydroxymethylpyri 22.5 2E+02 0.0044 28.6 5.9 30 7-37 49-78 (263)
294 PRK14464 ribosomal RNA large s 21.6 1.9E+02 0.0042 29.9 5.8 60 10-80 121-183 (344)
295 PTZ00191 60S ribosomal protein 21.5 2.2E+02 0.0048 25.7 5.4 52 9-63 85-138 (145)
296 cd06398 PB1_Joka2 The PB1 doma 21.4 3E+02 0.0066 22.6 5.9 30 150-179 56-85 (91)
297 PF10915 DUF2709: Protein of u 21.2 4.3E+02 0.0093 25.1 7.3 72 32-130 37-117 (238)
298 COG0217 Uncharacterized conser 21.1 4.5E+02 0.0097 25.8 7.8 51 7-64 96-156 (241)
299 KOG2187 tRNA uracil-5-methyltr 20.9 59 0.0013 35.3 1.9 37 47-83 63-101 (534)
300 PF00276 Ribosomal_L23: Riboso 20.9 76 0.0016 26.1 2.2 52 8-59 22-85 (91)
301 PF07876 Dabb: Stress responsi 20.9 3.8E+02 0.0083 21.3 6.5 55 10-64 6-71 (97)
302 KOG1175 Acyl-CoA synthetase [L 20.6 77 0.0017 35.5 2.8 92 16-129 507-599 (626)
303 PF10281 Ish1: Putative stress 20.5 72 0.0016 21.6 1.7 17 16-32 3-19 (38)
304 TIGR01033 DNA-binding regulato 20.5 3.7E+02 0.0081 26.3 7.3 42 7-55 96-143 (238)
305 PF03439 Spt5-NGN: Early trans 20.2 1E+02 0.0022 24.8 2.8 24 146-169 43-66 (84)
306 COG4232 Thiol:disulfide interc 20.2 1.4E+02 0.003 33.1 4.5 111 46-167 451-567 (569)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.2e-35 Score=302.79 Aligned_cols=168 Identities=22% Similarity=0.394 Sum_probs=153.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||++||+++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++|| ++.++|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.+.... ...++|||.|||+++||+||+++|++||+|++|+|++|+.++++|+||||+|+++++|
T Consensus 185 ~p~~~~----------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 185 RPGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred cccccc----------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 764211 1345799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCC--eEEEEEEcCCCCC
Q 011796 161 DRVLHKTF-HELNG--KMVEVKRAVPKEF 186 (477)
Q Consensus 161 ~~Al~~~~-~~l~G--r~l~V~~a~~k~~ 186 (477)
++||++++ +.|++ ++|+|++|+++..
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999 66765 7899999886543
No 2
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=100.00 E-value=6e-32 Score=268.84 Aligned_cols=235 Identities=51% Similarity=0.913 Sum_probs=191.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||++|+|+++||.|+++|.+||+|.+|++|+|+.|+++|+|+||+|++++.+.++| ...|+|+++.|+++.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 48899999999999999999999999999999999999999999999999999999999999 77899999999999999
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
++.++...... ..+++|||+.||.+++|++|+++|++|+.|.++.|+.|+.+.++|+|+||+|+++++++
T Consensus 84 ~r~~~~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 84 SREDQTKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred Ccccccccccc----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 99877654433 27889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCCCCCCCCCC-CCCCC-CCCCCCCCCccccccccCCCCCCCCCCCCCCC-CCCCCCC
Q 011796 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSS-MIGYN-NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RFSPLAT 238 (477)
Q Consensus 162 ~Al~~~~~~l~Gr~l~V~~a~~k~~~~~~~r~~-~gg~~-~~g~~~~~~~~~~~~~~~~~~~~gg~ggr~gg-r~g~~~g 238 (477)
+++.+..|+|++++|+|+.|.|++......... ...+. .++..+...++..+.+++.+.....+..++.. ++++...
T Consensus 154 kv~~~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFN 233 (311)
T ss_pred eecccceeeecCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccC
Confidence 999998899999999999999999876554221 12222 23333434444555555555544444545443 4444323
Q ss_pred CCCCCCCCC
Q 011796 239 GRGGISPFG 247 (477)
Q Consensus 239 GrGG~gg~g 247 (477)
.+-++..++
T Consensus 234 ~g~g~~~~~ 242 (311)
T KOG4205|consen 234 GGSGYPEFG 242 (311)
T ss_pred CCccccccC
Confidence 344444444
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=7.9e-31 Score=281.15 Aligned_cols=180 Identities=21% Similarity=0.464 Sum_probs=156.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|+ ++++.|++|+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 8999999999999865
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.......... ..........++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|+++++|
T Consensus 185 ~~~p~a~~~~-----~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 185 SNMPQAQPII-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred cccccccccc-----ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 4321111000 00011112457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
++||+.++ .+|+|+.|+|.++.++...
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999 8999999999999976543
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=254.99 Aligned_cols=178 Identities=26% Similarity=0.441 Sum_probs=149.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC-CeEEEEeecC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTVEAKKAV 81 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~l~V~~a~ 81 (477)
-|+|||+.||.|+.|++|..||++.|+|.+++||+|+.++.+||||||.|+++++|++|+ +|+++|. ||.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 489999999999999999999999999999999999999999999999999999999999 9999885 8888887664
Q ss_pred Ccch------------hhhh---c---------------------c----------------------------------
Q 011796 82 PRDD------------QNML---N---------------------R---------------------------------- 91 (477)
Q Consensus 82 ~~~~------------~~~~---~---------------------~---------------------------------- 91 (477)
.+.. .+.. + +
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 3311 0000 0 0
Q ss_pred --CC-CCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 92 --NT-SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 92 --~~-~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.. ..........+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.+.++|.+|++.++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc
Confidence 00 00000112345678999999999999999999999999999999977 99999999999999999999
Q ss_pred -CccCCeEEEEEEcCCCCCCCCC
Q 011796 169 -HELNGKMVEVKRAVPKEFSPGP 190 (477)
Q Consensus 169 -~~l~Gr~l~V~~a~~k~~~~~~ 190 (477)
++|+|.+|+|.+|+|..+++..
T Consensus 315 gkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred CceecCceEEEEecCChhhhccc
Confidence 9999999999999988765533
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.7e-30 Score=263.86 Aligned_cols=166 Identities=25% Similarity=0.505 Sum_probs=152.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|| +++..|.+++|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 5789999999999999999999999999999999999999999999999999999999999 89999999999999987
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
++... ....+|||.|||.++++++|+++|++||.|+.++|+.++.++.+++||||+|++.++|+
T Consensus 82 ~~~~~----------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSDS----------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred ccccc----------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 65321 23458999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHhcC-CccCC--eEEEEEEcCCCC
Q 011796 162 RVLHKTF-HELNG--KMVEVKRAVPKE 185 (477)
Q Consensus 162 ~Al~~~~-~~l~G--r~l~V~~a~~k~ 185 (477)
+||+.++ ..+.+ ++|.|+++..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988 66666 678999887655
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=6.4e-30 Score=271.34 Aligned_cols=178 Identities=26% Similarity=0.467 Sum_probs=156.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
++.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++|| +++..|.+++|.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 46789999999999999999999999999999999999999999999999999999999999 99999999999998765
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
............ ........++|||+|||..+||++|+++|++||.|+.|.|++++.+++++|||||+|.+.++|+
T Consensus 167 ~~~~~~~~~~~~----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 167 AEKNRAAKAATH----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred hhhhhhhhcccc----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 443222111100 0111123689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
+||+.++ .+|.+++|+|.++...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 9999988 8999999999998843
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=3.3e-29 Score=268.24 Aligned_cols=175 Identities=25% Similarity=0.402 Sum_probs=139.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC-CeEEEEeec
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~l~V~~a 80 (477)
..++|||+|||++++|++|+++|++||+|++|+|++| .++++||||||+|.++|+|++|| ++..+|. ++.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 67999999999999999999999 7777774 666655433
Q ss_pred CCcch----------h-----hh-------------------------------------------hccCC---------
Q 011796 81 VPRDD----------Q-----NM-------------------------------------------LNRNT--------- 93 (477)
Q Consensus 81 ~~~~~----------~-----~~-------------------------------------------~~~~~--------- 93 (477)
..... . +. .....
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 21100 0 00 00000
Q ss_pred -----CCC-CCCCCCCcccceeecCCCCCCCHHHHHHHhhhc--CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 011796 94 -----SSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165 (477)
Q Consensus 94 -----~~~-~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~--G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~ 165 (477)
... ..+......++|||+||++++|||+|+++|++| |+|++|++++ +||||+|+++++|++||+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHH
Confidence 000 000112345789999999999999999999999 9999998874 499999999999999999
Q ss_pred hcC-CccCCeEEEEEEcCCCCCC
Q 011796 166 KTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 166 ~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
+++ ++|++++|+|++|+|++..
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 888 8999999999999987654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.9e-29 Score=258.53 Aligned_cols=183 Identities=22% Similarity=0.415 Sum_probs=152.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC--eEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G--r~l~V~~ 79 (477)
..++|||.|||+++++++|+++|++||+|+.++|+.++.++.+++||||+|.+.++|++|+ ++...+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999999888999999999999999999999 88888876 6788888
Q ss_pred cCCcchhhhh---c-------cCC--------------------------------------------------CCCCC-
Q 011796 80 AVPRDDQNML---N-------RNT--------------------------------------------------SSIHS- 98 (477)
Q Consensus 80 a~~~~~~~~~---~-------~~~--------------------------------------------------~~~~~- 98 (477)
+......... . ... .....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7544311000 0 000 00000
Q ss_pred ---------------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 011796 99 ---------------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (477)
Q Consensus 99 ---------------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~A 163 (477)
........+|||+|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00011233699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCCC
Q 011796 164 LHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 164 l~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
|+.++ .+|+||+|+|.++..|..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 99998 899999999999998764
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6.8e-30 Score=254.80 Aligned_cols=174 Identities=27% Similarity=0.503 Sum_probs=153.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--H-cCCccCC--eEEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMIDG--RTVE 76 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-~~~~i~G--r~l~ 76 (477)
|.+.-+|||+.||+.|+|+|||++|++||.|.+|.|++|+.|+.+||||||.|.+.++|.+|+ + |.+.|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 356789999999999999999999999999999999999999999999999999999999998 4 4556654 5788
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC
Q 011796 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s 156 (477)
|++++...+.. ...++|||+-|+..+||.||+++|.+||.|++|.|++|.+ +.+||+|||+|.+
T Consensus 111 vk~Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fst 174 (510)
T KOG0144|consen 111 VKYADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFST 174 (510)
T ss_pred ecccchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEeh
Confidence 88876543321 2467999999999999999999999999999999999987 8899999999999
Q ss_pred HHHHHHHHHhcC--CccCC--eEEEEEEcCCCCCCCCCC
Q 011796 157 EEAVDRVLHKTF--HELNG--KMVEVKRAVPKEFSPGPS 191 (477)
Q Consensus 157 ~e~a~~Al~~~~--~~l~G--r~l~V~~a~~k~~~~~~~ 191 (477)
.|.|..||+.++ +.++| .+|.|+||.+++.+..+.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 999999999999 46666 689999999988776544
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-28 Score=231.47 Aligned_cols=176 Identities=28% Similarity=0.499 Sum_probs=153.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
+-.|||+.|..+++-|+||+.|.+||+|.+++|++|..|.++|||+||.|.++++|+.|| |+..-|..|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 557999999999999999999999999999999999999999999999999999999999 999999999999999988
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~ 162 (477)
|..........-...-.....+.++|||+|++..+||++|++.|++||+|.+|+|.+| +|||||.|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7633222111111111122356789999999999999999999999999999999988 4699999999999999
Q ss_pred HHHhcC-CccCCeEEEEEEcCCCCC
Q 011796 163 VLHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 163 Al~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
||..++ .+|.|+.|++.+-+....
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCC
Confidence 999998 999999999999876543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.1e-27 Score=260.79 Aligned_cols=182 Identities=28% Similarity=0.520 Sum_probs=156.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC----CeEEEE
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID----GRTVEA 77 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~----Gr~l~V 77 (477)
..++|||+|||+++||++|+++|++||+|++++|+++. +++++|||||+|.++++|++|+ +++..|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 45789999999999999999999999999999999986 4899999999999999999999 8999999 999999
Q ss_pred eecCCcchhhhhccCC--CCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeC
Q 011796 78 KKAVPRDDQNMLNRNT--SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155 (477)
Q Consensus 78 ~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~ 155 (477)
.++..+.+........ .............+|||.||++++|+++|+++|++||+|++|+|+.| .++++||||||+|+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 9987776543221111 01111112345678999999999999999999999999999999999 56899999999999
Q ss_pred CHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 156 SEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 156 s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
++++|++|++.++ +.|++++|.|++|.+++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9999999999988 8999999999999987643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.3e-27 Score=260.33 Aligned_cols=165 Identities=29% Similarity=0.508 Sum_probs=148.2
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCcc
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRD 84 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~~ 84 (477)
.|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|| ++...|.+++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999 78888999999999875432
Q ss_pred hhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 011796 85 DQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al 164 (477)
... .....+|||.|||+++++++|+++|++||.|++|+|++|. ++++||||||+|+++++|++||
T Consensus 82 ~~~--------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 82 SLR--------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred ccc--------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHH
Confidence 111 1234579999999999999999999999999999999986 4788999999999999999999
Q ss_pred HhcC-CccCCeEEEEEEcCCCCC
Q 011796 165 HKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 165 ~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
++++ ..++++.|.|....++..
T Consensus 147 ~~lng~~~~~~~i~v~~~~~~~~ 169 (562)
T TIGR01628 147 QKVNGMLLNDKEVYVGRFIKKHE 169 (562)
T ss_pred HHhcccEecCceEEEeccccccc
Confidence 9998 899999999987665443
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.1e-26 Score=247.63 Aligned_cols=178 Identities=18% Similarity=0.336 Sum_probs=143.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcc------------CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCC
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRY------------GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKH 68 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~------------G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~ 68 (477)
+...++|||+|||+++|+++|++||+++ ..|..+.+ .+.++||||+|.++|+|++|| +++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4578999999999999999999999975 23333333 345789999999999999999 9999
Q ss_pred ccCCeEEEEeecCCcchhhh-----hccCC----C----CCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEE
Q 011796 69 MIDGRTVEAKKAVPRDDQNM-----LNRNT----S----SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDV 135 (477)
Q Consensus 69 ~i~Gr~l~V~~a~~~~~~~~-----~~~~~----~----~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v 135 (477)
.|.++.|+|........... ..... . ...........++|||+|||+.+|+++|+++|++||.|+.|
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 99999999976543221100 00000 0 00111123456799999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 136 VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 136 ~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
.|++++.+++++|||||+|++.++|++||+.++ +.|.+++|.|.+|....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999999999988 89999999999987543
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=234.88 Aligned_cols=181 Identities=27% Similarity=0.469 Sum_probs=151.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.-+|+|+||||.|.+++|+.+|+.||.|++|.|++.+.++ -.|||||.|.+..+|++|| +|.++|++|+|-|.||++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC-ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999888744 4599999999999999999 999999999999999987
Q ss_pred cchhhhh-----------------cc---CC----------------C--C------------------CCC--------
Q 011796 83 RDDQNML-----------------NR---NT----------------S--S------------------IHS-------- 98 (477)
Q Consensus 83 ~~~~~~~-----------------~~---~~----------------~--~------------------~~~-------- 98 (477)
+..-+.. .. .. . . ...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 7331110 00 00 0 0 000
Q ss_pred ----------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 99 ----------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 99 ----------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.......++|||+|||+++||++|.++|++||+|+.+.|+.|+.|++++|.|||.|.++.++++||+...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001112689999999999999999999999999999999999999999999999999999999999872
Q ss_pred -------CccCCeEEEEEEcCCCCC
Q 011796 169 -------HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 169 -------~~l~Gr~l~V~~a~~k~~ 186 (477)
..|+||.|.|..|.+++.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 368999999999987764
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=217.90 Aligned_cols=169 Identities=24% Similarity=0.472 Sum_probs=155.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
++..+.|.|.-||..+|+||||.||..+|+|++|++++|+.|+.+.||+||.|.++++|++|+ +|...+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 456788999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHH
Q 011796 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (477)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (477)
+.|..+.. +...|||..||..+|+.||+++|++||.|...+|+.|..|+.+||.+||.|+..++
T Consensus 118 ARPSs~~I----------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 118 ARPSSDSI----------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ccCChhhh----------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 99876542 45579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-Ccc--CCeEEEEEEcCCCCC
Q 011796 160 VDRVLHKTF-HEL--NGKMVEVKRAVPKEF 186 (477)
Q Consensus 160 a~~Al~~~~-~~l--~Gr~l~V~~a~~k~~ 186 (477)
|+.||+.++ ++- .-.+|+|++|..+..
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 999999888 543 346899999986543
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.5e-25 Score=237.84 Aligned_cols=175 Identities=18% Similarity=0.307 Sum_probs=141.8
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
...++|||+|||+ .+|+++|+++|++||+|++|+|++++ ++||||+|.++++|++|| ++++.|.+++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999999863 589999999999999999 999999999999998
Q ss_pred cCCcchhhhhc----------c-C-CCCCC--C-------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCc--EEEEE
Q 011796 80 AVPRDDQNMLN----------R-N-TSSIH--S-------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT--ITDVV 136 (477)
Q Consensus 80 a~~~~~~~~~~----------~-~-~~~~~--~-------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~--V~~v~ 136 (477)
++.+....... + . ....+ . .....++++|||.|||+++||++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 86543211100 0 0 00000 0 001235678999999999999999999999998 88888
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeE------EEEEEcCCC
Q 011796 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM------VEVKRAVPK 184 (477)
Q Consensus 137 i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~------l~V~~a~~k 184 (477)
+..++. ..+++|||+|++.++|.+||.+++ ++|.++. |+|++++++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 875443 257899999999999999999998 8999885 999998764
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=3.5e-25 Score=236.72 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=139.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH----HcCCccCCeEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~l~V~~ 79 (477)
.+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++...|.+++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 469999999999999999 267889999999999
Q ss_pred cCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHH
Q 011796 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (477)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (477)
+..+....... ............+|+|.||++++|+++|+++|++||.|++|+|++++. +++|||+|++.++
T Consensus 75 s~~~~~~~~~~----~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~ 146 (481)
T TIGR01649 75 STSQEIKRDGN----SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNS 146 (481)
T ss_pred cCCcccccCCC----CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHH
Confidence 97654221110 000111123456899999999999999999999999999999987653 4689999999999
Q ss_pred HHHHHHhcC-CccCC--eEEEEEEcCCCC
Q 011796 160 VDRVLHKTF-HELNG--KMVEVKRAVPKE 185 (477)
Q Consensus 160 a~~Al~~~~-~~l~G--r~l~V~~a~~k~ 185 (477)
|++|++.++ ++|.+ +.|+|.+++++.
T Consensus 147 A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 147 AQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 999999998 88865 589999988654
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=229.22 Aligned_cols=186 Identities=22% Similarity=0.446 Sum_probs=159.5
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
|+++-.||||++||++++.++|.++|+.+|+|..|.++.++.+...|||+||.|.-.|++++|+ .+...|.+|.|.|+
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 3455589999999999999999999999999999999999999999999999999999999999 77788999999999
Q ss_pred ecCCcchhhhhccCCCCC-----CC-----CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcce
Q 011796 79 KAVPRDDQNMLNRNTSSI-----HS-----SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRG 148 (477)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG 148 (477)
.+.++...+......... .. .....+..+|.|+||||.|.++||+.+|+.||.|.+|.|++.+++ +.+|
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcG 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCG 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-Cccc
Confidence 998876655222111100 00 111223679999999999999999999999999999999988774 4559
Q ss_pred EEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 149 FGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 149 ~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
||||.|....+|.+||+.++ ++|+||+|.|+||.+++..
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999 9999999999999998754
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=8.2e-26 Score=203.35 Aligned_cols=169 Identities=30% Similarity=0.473 Sum_probs=153.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
...+|||+||+..++|+.|.|+|-++|+|++++|.+|+.|...+|||||||.++|+|+-|+ ++..++-+|+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999 88889999999999887
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEE-EEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
...+. .....+|||+||.++++|..|.++|+.||.|.+ -+|++|+.|+.+++|+||.|++.|++
T Consensus 88 ~~~~n---------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQKN---------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccccc---------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 32211 123478999999999999999999999999866 48999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
++|++.++ +.+..++|+|.++..+..+
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999 8999999999999866543
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=7.4e-25 Score=235.56 Aligned_cols=181 Identities=18% Similarity=0.364 Sum_probs=147.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+.+|+++|+++|+.||+|+.+.|++++.+++++|||||+|.++++|++|| ++...|.+++|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4579999999999999999999999999999999999999999999999999999999999 89999999999999986
Q ss_pred CcchhhhhccCC---------CC---CCCCCCCCcccceeecCCCCC----------CCHHHHHHHhhhcCcEEEEEEEe
Q 011796 82 PRDDQNMLNRNT---------SS---IHSSPGPGRTKKIFVGGLAST----------VTESDFKKYFDQFGTITDVVVMY 139 (477)
Q Consensus 82 ~~~~~~~~~~~~---------~~---~~~~~~~~~~~~lfV~nLp~~----------~teedL~~~F~~~G~V~~v~i~~ 139 (477)
............ .. .........+++|+|.||... .+.++|+++|++||.|+.|+|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543222111100 00 000112235778999999532 12368999999999999999987
Q ss_pred cC---CCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 140 DH---NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 140 d~---~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
+. .+...+|++||+|+++++|++||+.|+ ..|+|+.|.|.+..+.
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 53 344567999999999999999999999 8999999999997643
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=208.51 Aligned_cols=146 Identities=25% Similarity=0.545 Sum_probs=136.2
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
-+|||+|||.++++.+|+.||++||+|++|.|+++ |+||..+|+..|+.|+ ++.-+|++..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 8999999999999999 8888999999999988876
Q ss_pred chhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 011796 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~A 163 (477)
. ..+.+|+|+||.+.++.+||++.|++||+|.+|+|++| |+||+|+-.++|..|
T Consensus 75 s------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 S------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEA 128 (346)
T ss_pred C------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHH
Confidence 3 25678999999999999999999999999999999977 999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCC
Q 011796 164 LHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 164 l~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
|..++ .+++|++++|.++..+-
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhcccccccccceeeeeeecccc
Confidence 99888 89999999999987654
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.3e-22 Score=215.53 Aligned_cols=176 Identities=22% Similarity=0.393 Sum_probs=141.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.++|||+|||.++||++|+++|++||+|+.|.|++++.++++++||||+|.+.++|++|+ +++..|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999999999999999999999999999999 899999999999999643
Q ss_pred cchhhhh--------------------------c---cCC------------------------------C---------
Q 011796 83 RDDQNML--------------------------N---RNT------------------------------S--------- 94 (477)
Q Consensus 83 ~~~~~~~--------------------------~---~~~------------------------------~--------- 94 (477)
....... . ... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 2110000 0 000 0
Q ss_pred ------CCCCCCCCCcccceeecCCCCCCC----------HHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHH
Q 011796 95 ------SIHSSPGPGRTKKIFVGGLASTVT----------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158 (477)
Q Consensus 95 ------~~~~~~~~~~~~~lfV~nLp~~~t----------eedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e 158 (477)
..........+++|+|.||....+ ++||++.|++||.|+.|.|... ...|++||+|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 000000124567889999854433 3689999999999999999733 45799999999999
Q ss_pred HHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 159 AVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 159 ~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
+|++|++.|+ ..|+|+.|+|.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999 8999999999997643
No 23
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=8.8e-21 Score=193.14 Aligned_cols=175 Identities=21% Similarity=0.395 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
+.-.|.|++|||+||++||++||+.| .|+++++.++ ++|..|-|||||+++|++++|| ++...+..|-|+|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 45678999999999999999999999 5778666554 6999999999999999999999 778888899999999887
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEE-EEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
.+..........+.. .....|.++.||+.|||+||.+||+-.-.|.+ |.++.|+. .++.|-|||.|++.|+|+
T Consensus 86 ~e~d~~~~~~g~~s~-----~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSS-----ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccccCCCCCCC-----CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHH
Confidence 765443332222111 34567999999999999999999998866666 45666665 679999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCCC
Q 011796 162 RVLHKTFHELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 162 ~Al~~~~~~l~Gr~l~V~~a~~k~~~ 187 (477)
+||+++.+.|..|-|+|.++...+.+
T Consensus 160 ~Al~rhre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 160 IALGRHRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHHHHHHHhhccceEEeehhHHHHHH
Confidence 99999999999999999887755443
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.7e-22 Score=189.17 Aligned_cols=180 Identities=26% Similarity=0.447 Sum_probs=150.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC--eEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G--r~l~V~~a 80 (477)
...|||.+||+.+|.+||+++|++||.|...+|+.|..|+.+||.+||.|...++|++|+ +|.++-.+ .+|.|+++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 468999999999999999999999999999999999999999999999999999999999 88776654 57999988
Q ss_pred CCcchhhhhc-----------cCCCCC------------------------------------CCCCCCCcccceeecCC
Q 011796 81 VPRDDQNMLN-----------RNTSSI------------------------------------HSSPGPGRTKKIFVGGL 113 (477)
Q Consensus 81 ~~~~~~~~~~-----------~~~~~~------------------------------------~~~~~~~~~~~lfV~nL 113 (477)
.......... +..... ..+..+....+|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 5543211100 000000 00111223468999999
Q ss_pred CCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 114 p~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
.++++|.-|.++|.+||.|..|+|++|..|.+.|||+||++.+-++|..||..++ ..|.+|.|.|.+...|
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999 8999999999998755
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.6e-23 Score=202.01 Aligned_cols=175 Identities=22% Similarity=0.515 Sum_probs=152.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.|+|||+.|+++..||.||..|.+||+|++|.+-.|+.|++.||||||||+-+|.|..|+ +|...+.||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 999999999999975432
Q ss_pred cch-hhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 83 RDD-QNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
-.. +.....- .+....-.+|||..+..+++|+||+.+|+.||+|+.|.+.+++.+...|||+||||.+..+..
T Consensus 193 mpQAQpiID~v------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQPIIDMV------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CcccchHHHHH------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 111 1110000 000124568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
.||..+| .+|.|..|+|-.+..+.
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred HHhhhcchhhcccceEecccccCCC
Confidence 9999999 89999999998877543
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=8.4e-23 Score=210.25 Aligned_cols=182 Identities=25% Similarity=0.468 Sum_probs=156.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
|+|.++||+-.|+..+++-+|.+||+.+|+|.+|+|+.|+.+.++||.|||||.|.+.+..|| +.++.+.+.+|.|+..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 468899999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
....... ..............+..+|||+||.++++|++|+.+|+.||.|+.|.+++|.+|+++|||+||+|.+.++|
T Consensus 256 Eaeknr~--a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRA--ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHH--HhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 5433221 11111111111123444599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
++|++.++ .+|.|+.|+|.....+-
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeec
Confidence 99999999 99999999998776544
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.5e-21 Score=200.54 Aligned_cols=155 Identities=29% Similarity=0.494 Sum_probs=142.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
..|||+ +++||.+|.++|+++++|++++|++|. | +.|||||.|.++++|++|| +|-..|.+++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 7 9999999999999999999 8899999999999998755
Q ss_pred chhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 011796 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~A 163 (477)
... |||.||+++++..+|.++|+.||.|.+|++.+|++- ++|| ||+|+++++|++|
T Consensus 76 ~~~---------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 PSL---------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKA 131 (369)
T ss_pred Cce---------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHH
Confidence 321 999999999999999999999999999999999874 9999 9999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCCCCCCC
Q 011796 164 LHKTF-HELNGKMVEVKRAVPKEFSPGP 190 (477)
Q Consensus 164 l~~~~-~~l~Gr~l~V~~a~~k~~~~~~ 190 (477)
|++++ ..+.+++|.|.+..+++.+..+
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccc
Confidence 99999 8999999999998887765433
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=205.31 Aligned_cols=175 Identities=24% Similarity=0.423 Sum_probs=147.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
..++|||+||++++|.++|..+|...|.|.+|.|...+.. -.|.||+||+|.++++|+.|+ ++.+.|+|+.|+|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999999988766542 136699999999999999999 77899999999999
Q ss_pred ecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHH
Q 011796 79 KAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158 (477)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e 158 (477)
.+..+...... ..........+|+|+|||+.++..+|+++|..||.|++|+|++.......||||||+|-+++
T Consensus 594 ~S~~k~~~~~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 594 ISENKPASTVG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred eccCccccccc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 99822221111 11111234679999999999999999999999999999999988666678999999999999
Q ss_pred HHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 159 AVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 159 ~a~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
+|.+|+..+. ..|.||.|.+.||+...
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccch
Confidence 9999999998 88999999999998543
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=4.8e-21 Score=181.38 Aligned_cols=184 Identities=21% Similarity=0.400 Sum_probs=152.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCC-ccC--CeEEEEe
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH-MID--GRTVEAK 78 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~-~i~--Gr~l~V~ 78 (477)
|+++|||+.|.+.-.|||++.+|..||+|++|.+.+.++ +.+||+|||+|.+..+|..|| ++.. .+. -..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 789999999999999999999999999999999999886 999999999999999999999 6654 333 3578899
Q ss_pred ecCCcchhhhhc--------------------------------------------------------------cC----
Q 011796 79 KAVPRDDQNMLN--------------------------------------------------------------RN---- 92 (477)
Q Consensus 79 ~a~~~~~~~~~~--------------------------------------------------------------~~---- 92 (477)
++...+++.... .+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 887654411100 00
Q ss_pred C-----CCCCC---------------------------------------------------------------------
Q 011796 93 T-----SSIHS--------------------------------------------------------------------- 98 (477)
Q Consensus 93 ~-----~~~~~--------------------------------------------------------------------- 98 (477)
. ...+.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 00000
Q ss_pred ----------------------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC
Q 011796 99 ----------------------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (477)
Q Consensus 99 ----------------------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s 156 (477)
...-.+.+.|||-.||.+..+.||.+.|-.||.|++.+|..|+.|..+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0011234679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 011796 157 EEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 157 ~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~~ 188 (477)
+.++++||+.+| ..|.=|+|+|.+.+||+..+
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 89999999999999988643
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-19 Score=186.52 Aligned_cols=170 Identities=24% Similarity=0.474 Sum_probs=151.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+|...|||+||++++|.++|.++|+.||+|++|+++++.. + +||| ||+|.++++|++|+ +|+..+.+++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 5666699999999999999999999999999999999986 5 9999 99999999999999 9999999999999998
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
..+.+....... .......++|.+++.++++++|+++|.++++|+.+.++.+.. +++++|+||+|++.++|
T Consensus 151 ~~~~er~~~~~~--------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 151 ERKEEREAPLGE--------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDA 221 (369)
T ss_pred cchhhhcccccc--------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHH
Confidence 887665433322 113456799999999999999999999999999999999987 45999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
++|++.++ ..+.++.+.|..+..+
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred HHHHHhccCCcCCccceeecccccc
Confidence 99999999 7888899999887763
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.2e-20 Score=175.54 Aligned_cols=140 Identities=21% Similarity=0.475 Sum_probs=120.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecC
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~ 81 (477)
+++-++|||+||..++||+-|..||+++|.|+.|+|+.| +|+|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 467899999999999999999999999999999999987 34444444
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
....+. .+.......|||+.|...++-|+|++.|.+||+|.+++|++|..|.++|||+||.|.+.++|+
T Consensus 50 ~p~nQs-----------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 50 APGNQS-----------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred CcccCC-----------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 331111 011123557999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
.||+.|+ +.|..|.|+-.+|..|.
T Consensus 119 nAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 119 NAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhCCeeeccceeeccccccCc
Confidence 9999999 89999999999998776
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=9.4e-20 Score=182.56 Aligned_cols=181 Identities=23% Similarity=0.431 Sum_probs=150.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcC-CccCC--eEEEEe
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMIDG--RTVEAK 78 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~-~~i~G--r~l~V~ 78 (477)
+.++|||+.|++.+||.||+++|.+||.|++|.|++|.. +.+||||||.|.+.|.|..|+ +|. ++++| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999999999999999986 999999999999999999999 664 45555 589999
Q ss_pred ecCCcchhhhhccC------------------------------------------------------------------
Q 011796 79 KAVPRDDQNMLNRN------------------------------------------------------------------ 92 (477)
Q Consensus 79 ~a~~~~~~~~~~~~------------------------------------------------------------------ 92 (477)
++++++++......
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 99886442110000
Q ss_pred ----------CCCCC-------------C---------------------------------------------------
Q 011796 93 ----------TSSIH-------------S--------------------------------------------------- 98 (477)
Q Consensus 93 ----------~~~~~-------------~--------------------------------------------------- 98 (477)
..... .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 00000 0
Q ss_pred --------------------------------------------------------CCCCCcccceeecCCCCCCCHHHH
Q 011796 99 --------------------------------------------------------SPGPGRTKKIFVGGLASTVTESDF 122 (477)
Q Consensus 99 --------------------------------------------------------~~~~~~~~~lfV~nLp~~~teedL 122 (477)
...-.+...|||..||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 000011145999999999999999
Q ss_pred HHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 123 ~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
-+.|..||.|+..++..|+.|+-+|.|+||.|++..+|..||..++ ..|..++++|...+++.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999999999999999999999999999999999999999999 89999999999987654
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=6.4e-18 Score=182.00 Aligned_cols=79 Identities=20% Similarity=0.484 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++|| +|...|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999 99999999999998876
Q ss_pred C
Q 011796 82 P 82 (477)
Q Consensus 82 ~ 82 (477)
+
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=4e-18 Score=153.55 Aligned_cols=84 Identities=31% Similarity=0.598 Sum_probs=79.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
.+++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87654
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=167.39 Aligned_cols=177 Identities=25% Similarity=0.391 Sum_probs=145.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
...+.+||.|||+++.+++||+||. +.|+|+.|.|+.|.. +++||+|.|||+++|.++||+ ++++++.+|+|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 579999999999986 999999999999999999999 999999999999987
Q ss_pred cCCcchhhh------------------------------------------hccCC------------------------
Q 011796 80 AVPRDDQNM------------------------------------------LNRNT------------------------ 93 (477)
Q Consensus 80 a~~~~~~~~------------------------------------------~~~~~------------------------ 93 (477)
....+..+. ..+..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 654211000 00000
Q ss_pred ----CCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-
Q 011796 94 ----SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF- 168 (477)
Q Consensus 94 ----~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~- 168 (477)
.+.+ .-.+....++||.||.+.+..+.|++.|.-.|.|+.|.+-.||+ +.++|||.|+|+++-.+.+||.+++
T Consensus 201 ~~Flr~~h-~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLH-IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhcc-CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 0000 01223456899999999999999999999999999999999998 5899999999999999999999998
Q ss_pred CccCCeEEEEEEcC
Q 011796 169 HELNGKMVEVKRAV 182 (477)
Q Consensus 169 ~~l~Gr~l~V~~a~ 182 (477)
.-+..++..|.+..
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 67777888887754
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=3.3e-17 Score=148.09 Aligned_cols=168 Identities=20% Similarity=0.311 Sum_probs=132.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.+++|||+|||.++-|.||++||-+||.|++|.|...+ ..-.||||||+++.+|+.|| .+.-.+++..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 568999999999999999999999999999999986543 34579999999999999999 8889999999999998
Q ss_pred CCcchhhhhcc----------CCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEE
Q 011796 81 VPRDDQNMLNR----------NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150 (477)
Q Consensus 81 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~a 150 (477)
..-.......- ........+......+|.|..||...+++|||++..+-|.|....+.+|- ++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ce
Confidence 66431110000 00001112223445689999999999999999999999999999998873 79
Q ss_pred EEEeCCHHHHHHHHHhcC-Cc--cCCeEEEEEE
Q 011796 151 FITYDSEEAVDRVLHKTF-HE--LNGKMVEVKR 180 (477)
Q Consensus 151 FVeF~s~e~a~~Al~~~~-~~--l~Gr~l~V~~ 180 (477)
.|+|...|+++-|+.+++ .. -.|....|.+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999999887 33 2444444443
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=1.6e-17 Score=149.59 Aligned_cols=83 Identities=45% Similarity=0.808 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++|| ++.++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999 7899999999999998
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 38
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8.1e-18 Score=162.08 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=95.0
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
..++-++|||..|+++++|++|+++|++||+|+.|+|++|+.|++++|||||+|+++.++.+|.++.+ ++|+++.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCC
Q 011796 180 RAVPKEFSPGPSRSSMIGYNNF 201 (477)
Q Consensus 180 ~a~~k~~~~~~~r~~~gg~~~~ 201 (477)
+...+..+-|.+|..+++.++.
T Consensus 177 vERgRTvkgW~PRRLGGGLGg~ 198 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLGGGLGGR 198 (335)
T ss_pred ecccccccccccccccCCcCCc
Confidence 9999999999999888876644
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.9e-17 Score=154.01 Aligned_cols=160 Identities=26% Similarity=0.483 Sum_probs=129.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
.+|||++||+.+.+++|.+||..|+.|.+|.+.. +|+||+|.|+-+|+.|+ ++..+|.+.++.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999988864 48999999999999999 9999999888888888764
Q ss_pred chhhhhc----cCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHH
Q 011796 84 DDQNMLN----RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (477)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (477)
....... +......-........+|+|.+|+..+.+.+|+++|+++|+++.+.+. +.++||+|+++++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 3322110 000011112223455689999999999999999999999999555542 4489999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEc
Q 011796 160 VDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 160 a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
+.+||++++ .+|.++.|+|...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999 8999999999443
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=6.6e-16 Score=144.54 Aligned_cols=171 Identities=16% Similarity=0.313 Sum_probs=136.3
Q ss_pred CCcEEEEcCCCccCcHHHHHH----HHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 4 DLGKLFIGGISWDTDEERLKE----YFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre----~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
..+||||.||+..+..++|++ +|+.||+|.+|...+ |.+.||-|||.|++.+.|..|+ +++..+-++.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999998 999999999998876 4679999999999999999999 9999999999999
Q ss_pred eecCCcchhhhhcc-------------------CCC-----------CCCC----CCCCCcccceeecCCCCCCCHHHHH
Q 011796 78 KKAVPRDDQNMLNR-------------------NTS-----------SIHS----SPGPGRTKKIFVGGLASTVTESDFK 123 (477)
Q Consensus 78 ~~a~~~~~~~~~~~-------------------~~~-----------~~~~----~~~~~~~~~lfV~nLp~~~teedL~ 123 (477)
.+|+.+.+.....+ ... .... .........||+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99977654322100 000 0000 1113456789999999999999999
Q ss_pred HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEEEcC
Q 011796 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAV 182 (477)
Q Consensus 124 ~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~-Gr~l~V~~a~ 182 (477)
.+|++|.-.++|+++... ++.|||+|.++..+..|.+.+. ..|- ..++.|++++
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998643 4599999999888888887776 3333 7777777764
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.68 E-value=1.9e-16 Score=163.55 Aligned_cols=172 Identities=21% Similarity=0.424 Sum_probs=132.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
++|||+||...++|++|+.+|++||.|+.|.+++|..|+++|||+||+|.++++|++|+ +|..+|.|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 44999999999999999999999999999999999999999999999999999999998 9999999999998654333
Q ss_pred chhhhh----------cc-------------------CC---------------------------CCCCCCCCC-----
Q 011796 84 DDQNML----------NR-------------------NT---------------------------SSIHSSPGP----- 102 (477)
Q Consensus 84 ~~~~~~----------~~-------------------~~---------------------------~~~~~~~~~----- 102 (477)
.++... .. .. .........
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 221100 00 00 000001111
Q ss_pred --CcccceeecCC--CCCCC--------HHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C
Q 011796 103 --GRTKKIFVGGL--ASTVT--------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H 169 (477)
Q Consensus 103 --~~~~~lfV~nL--p~~~t--------eedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~ 169 (477)
..+.++.|.|+ |.+.| .|||.+.+.+||.|..|.|-+. +-|+.||.|.++++|.+|+..++ .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 34556667765 22222 2678888899999988877543 23899999999999999999999 8
Q ss_pred ccCCeEEEEEEcC
Q 011796 170 ELNGKMVEVKRAV 182 (477)
Q Consensus 170 ~l~Gr~l~V~~a~ 182 (477)
.|.+|.|++++-.
T Consensus 514 WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 514 WFAGRMITAKYLP 526 (549)
T ss_pred hhccceeEEEEee
Confidence 9999999999853
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2e-16 Score=148.40 Aligned_cols=80 Identities=41% Similarity=0.870 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
...+||||++|+|++++|+|+++|++||+|++++|+.|+.|+|+|||+||.|+|.|+|++|+ ..+..|+||+..|..+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 35689999999999999999999999999999999999999999999999999999999999 55789999999998875
Q ss_pred C
Q 011796 82 P 82 (477)
Q Consensus 82 ~ 82 (477)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.64 E-value=1.8e-15 Score=146.14 Aligned_cols=160 Identities=26% Similarity=0.476 Sum_probs=122.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.++|||+|||+++|+++|+++|.+||+|..|.|+.++.+++++|||||+|.++++|.+|+ ++...|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999999999989999999999999999999999 778999999999999653
Q ss_pred ----cchhhhh----ccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEe
Q 011796 83 ----RDDQNML----NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (477)
Q Consensus 83 ----~~~~~~~----~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF 154 (477)
+...... ..................+++.+++..++++++..+|..++.+..+.+...........+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2221100 00011112223345667899999999999999999999999997777776655444433444444
Q ss_pred CCHHHHHHHH
Q 011796 155 DSEEAVDRVL 164 (477)
Q Consensus 155 ~s~e~a~~Al 164 (477)
.....+..++
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 3343333333
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.8e-15 Score=160.16 Aligned_cols=174 Identities=19% Similarity=0.278 Sum_probs=132.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.++.|+|+|||..+..++|.+.|.+||+|..+.|.+.-. -++|+|.++.+|++|+ +.-..+.-.++-++|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 4678999999999999999999999999999995553221 4999999999999999 6666666666666555
Q ss_pred CCcchhhh------------------hcc---CCCCCC-------------CCCCCCcccceeecCCCCCCCHHHHHHHh
Q 011796 81 VPRDDQNM------------------LNR---NTSSIH-------------SSPGPGRTKKIFVGGLASTVTESDFKKYF 126 (477)
Q Consensus 81 ~~~~~~~~------------------~~~---~~~~~~-------------~~~~~~~~~~lfV~nLp~~~teedL~~~F 126 (477)
.....+.. ..+ ...... .........+|||.||++++|.++|+.+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 32211100 000 000000 00111222349999999999999999999
Q ss_pred hhcCcEEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 127 DQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 127 ~~~G~V~~v~i~~d~~tg---~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+.|.|..|.|.+.++.. .+.||+||+|.++++|++|++.|+ +.|+|+.|.|+++.
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999999998766432 245999999999999999999999 99999999999987
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=3.1e-15 Score=153.06 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||.+||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ++|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 988654
No 46
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=142.99 Aligned_cols=80 Identities=36% Similarity=0.658 Sum_probs=76.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
.-+||||++|+|+++.|+|+++||+||+|++++|+.|+.|+++|||+||+|.+.|+|++|++..+..|+||+..|++|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999864
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=6.5e-14 Score=143.35 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=133.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVE-AVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~-v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
....|.+++|||.|||+||.+||+..-.|.+ |.++.++. +++.|.|||.|++.|+|++|| .+++.|.-|-|+|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4678999999999999999999998866666 33555554 889999999999999999999 88899999999997663
Q ss_pred Ccchhhhhc------------------cC----------------------------------C---------------C
Q 011796 82 PRDDQNMLN------------------RN----------------------------------T---------------S 94 (477)
Q Consensus 82 ~~~~~~~~~------------------~~----------------------------------~---------------~ 94 (477)
..+...... +. . .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 322211110 00 0 0
Q ss_pred C---CCC-------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 011796 95 S---IHS-------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (477)
Q Consensus 95 ~---~~~-------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al 164 (477)
. .+. .........++++.||+..++.+|.++|...-.+ .|+|...++ ++..|-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~d-Gr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPD-GRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCC-CccCCcceeecccchhhHhhh
Confidence 0 000 0001122568899999999999999999987555 566655544 888999999999999999999
Q ss_pred HhcCCccCCeEEEEEEcCC
Q 011796 165 HKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 165 ~~~~~~l~Gr~l~V~~a~~ 183 (477)
.+....+..+-|++.....
T Consensus 339 skd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLNGA 357 (510)
T ss_pred ccCCcccCcceeeecccCC
Confidence 9999889999999877643
No 48
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.59 E-value=1.6e-15 Score=150.30 Aligned_cols=182 Identities=21% Similarity=0.309 Sum_probs=143.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEA 77 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V 77 (477)
.+.-.|.+++||+++++.|+.+||.+. +.++.|.+++.+ ++|..|-|||.|..+++|++|| +|+..|.-|-|++
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 356678999999999999999999642 245556666554 4999999999999999999999 8888998899999
Q ss_pred eecCCcchhhhhccCCCCC---------------CCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEE-E--EEEEe
Q 011796 78 KKAVPRDDQNMLNRNTSSI---------------HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTIT-D--VVVMY 139 (477)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~-~--v~i~~ 139 (477)
.++...+.++..++..... ...+......+|.+++||+..+.|||.++|..|-.-+ . |+++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 8887777766655433110 0111223366899999999999999999999886433 2 67777
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 011796 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 140 d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
+.+ +++.|-|||+|.++|+|.+|.++.+ +.++.|.|+|-.+.-.+.
T Consensus 318 N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 318 NGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred cCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 766 8999999999999999999999988 566699999988765543
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=6.7e-15 Score=158.46 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=96.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.++|||+|||+++|||+|+++|++| |+|++|++++ +||||+|+++++|++|| ++..+|++++|+|+++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 49999999999999999 8999999999999999
Q ss_pred CCcchhhhhc--c----------CCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCc
Q 011796 81 VPRDDQNMLN--R----------NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT 131 (477)
Q Consensus 81 ~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~ 131 (477)
+++....... + .............+.++++.+|++.++++.|.++|..++.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 8875542110 0 0000111122346789999999999999999999999874
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.56 E-value=7.2e-14 Score=137.39 Aligned_cols=176 Identities=15% Similarity=0.305 Sum_probs=134.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCe
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR 73 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr 73 (477)
-++.|||.+||.++|-+++.++|++||.|.. |+|.++.. |..||=|.|.|...|+++.|+ ++...|.++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3566999999999999999999999998754 77888876 999999999999999999999 999999999
Q ss_pred EEEEeecCCcchhh------------------hh-cc---CCCCCCCCCCCCcccceeecCC--C--CCCC-------HH
Q 011796 74 TVEAKKAVPRDDQN------------------ML-NR---NTSSIHSSPGPGRTKKIFVGGL--A--STVT-------ES 120 (477)
Q Consensus 74 ~l~V~~a~~~~~~~------------------~~-~~---~~~~~~~~~~~~~~~~lfV~nL--p--~~~t-------ee 120 (477)
+|+|+.|+-...-. .. .. ..............++|.|.|+ | +..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99998873221100 00 00 0001111112234567888886 1 1222 36
Q ss_pred HHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 121 dL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
||++.+++||.|..|.|... .|.|.+.|.|.+.++|+.||+.|+ ..+++|+|+.....-+
T Consensus 292 dl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 77888999999999988743 357899999999999999999999 8999999988776543
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.5e-14 Score=111.38 Aligned_cols=68 Identities=31% Similarity=0.771 Sum_probs=64.6
Q ss_pred EEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
|||+|||+++|+++|+++|++||+|..++++.+ .+++.+++|||+|.++++|++|+ ++...|.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 56899999999999999999999 899999999884
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=4.1e-14 Score=110.13 Aligned_cols=69 Identities=30% Similarity=0.756 Sum_probs=65.3
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
|||.|||+++|+++|+++|++||.|+.++++.+ .+++++++|||+|+++++|++|++.++ +.|++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999999888 899999985
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.4e-14 Score=133.92 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+|.++|.|.|||.+++|++|++||.+||.|..|.|.+|++|+.+||||||.|.+.++|++|| ++.+-++.--|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 47889999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 54
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.4e-13 Score=141.83 Aligned_cols=177 Identities=22% Similarity=0.418 Sum_probs=126.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCC-CC--Cccc---EEEEEeCCHHHHHHHHHcCCccCCeE--E
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRA-TG--RARG---FGFVVFADPAVAERVIMDKHMIDGRT--V 75 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~-tg--~srG---~aFVeF~~~e~A~kAl~~~~~i~Gr~--l 75 (477)
=+++|||+.|||+++|++|...|..||.|. |....+.. .+ -.+| |+|+.|+++.++++.|..-.. ...+ +
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~yf 335 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYYF 335 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceEE
Confidence 478999999999999999999999999864 44442211 11 2567 999999999998887722221 1122 2
Q ss_pred EEeecCCcchh-hhh----ccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhh-hcCcEEEEEEEecCCCCCcceE
Q 011796 76 EAKKAVPRDDQ-NML----NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD-QFGTITDVVVMYDHNTQRPRGF 149 (477)
Q Consensus 76 ~V~~a~~~~~~-~~~----~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~-~~G~V~~v~i~~d~~tg~~rG~ 149 (477)
+|.....+.+. +.. ....-........++.++|||+.||..++.++|..+|+ .||.|.-|-|-.|++.+.+||-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 22222222110 000 00001111233456889999999999999999999998 6999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcCCcc----CCeEEEEEEcC
Q 011796 150 GFITYDSEEAVDRVLHKTFHEL----NGKMVEVKRAV 182 (477)
Q Consensus 150 aFVeF~s~e~a~~Al~~~~~~l----~Gr~l~V~~a~ 182 (477)
+-|+|.+..+-.+||++...+| -.|+|+|+.-.
T Consensus 416 GRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred ceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 9999999999999998865333 23678887654
No 55
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.8e-14 Score=132.40 Aligned_cols=82 Identities=24% Similarity=0.460 Sum_probs=78.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
++..+|.|.||+.+++|+||+++|.+||.|.+|.|.+|++|+.+||||||+|+++++|++||+.++ +-++.-.|.|.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 456789999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCC
Q 011796 182 VPK 184 (477)
Q Consensus 182 ~~k 184 (477)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7.5e-14 Score=146.08 Aligned_cols=181 Identities=19% Similarity=0.378 Sum_probs=140.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||.+||...++++++|++..||++...+++.+..++-+|+|||.||+++.....|+ +|...+-.++|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35689999999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred CCcchhhhhccCCCC--------CCCCCCCCcccceeecCC--CCCC-CH-------HHHHHHhhhcCcEEEEEEEec--
Q 011796 81 VPRDDQNMLNRNTSS--------IHSSPGPGRTKKIFVGGL--ASTV-TE-------SDFKKYFDQFGTITDVVVMYD-- 140 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~lfV~nL--p~~~-te-------edL~~~F~~~G~V~~v~i~~d-- 140 (477)
.+.........+... ...+..-.++..|.+.|+ |.++ .+ |+|+..+.+|+.|..|.|.++
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 776554433333111 001122234455555554 1111 12 355566678999999999887
Q ss_pred -CCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 141 -HNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 141 -~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
.......|-.||||.+.+++++|++.+. .++++|.|...+-.+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2233456889999999999999999999 899999999888653
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.8e-14 Score=137.12 Aligned_cols=87 Identities=22% Similarity=0.536 Sum_probs=78.5
Q ss_pred CCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 100 PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 100 ~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
+.....++|+|.|||+...|.||+.+|++||+|.+|.|+.+. .-+|||+||+|++.+||++|.++++ ..++||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344567899999999999999999999999999999999874 5689999999999999999999999 8999999999
Q ss_pred EEcCCCCCCC
Q 011796 179 KRAVPKEFSP 188 (477)
Q Consensus 179 ~~a~~k~~~~ 188 (477)
..|.++-..+
T Consensus 169 n~ATarV~n~ 178 (376)
T KOG0125|consen 169 NNATARVHNK 178 (376)
T ss_pred eccchhhccC
Confidence 9998775444
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=9.8e-14 Score=108.79 Aligned_cols=68 Identities=34% Similarity=0.729 Sum_probs=62.2
Q ss_pred EEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
|||+|||+++++++|+++|+.++.|..++++.++. ++.+++|||+|.++++|++|+ .+++.|++++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 899999999999999999999 556899999885
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.4e-13 Score=107.92 Aligned_cols=69 Identities=28% Similarity=0.685 Sum_probs=64.5
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
|||+|||++++++||+++|+.|+.|++|++.++++ ++++++|||+|.++++|++|++.++ +.|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 8999999999999999999999999 899999985
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=133.60 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
..++|||+|||+++||++|++||+.||+|++|+|++++. .++||||+|+++++|++|| +++..|.++.|+|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999999864 5789999999999999999 999999999999999865
Q ss_pred c
Q 011796 83 R 83 (477)
Q Consensus 83 ~ 83 (477)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.48 E-value=1.2e-12 Score=131.19 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=131.3
Q ss_pred CcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 5 LGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 5 ~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
++.|.|-||.++ +|+|.|..+|.-||+|..|+|+.++.+ -|.|++.|...|+.|+ ++++.|.+|+|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578899999877 999999999999999999999988653 5999999999999999 99999999999998876
Q ss_pred CcchhhhhccCC----------CCCCC---------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCC
Q 011796 82 PRDDQNMLNRNT----------SSIHS---------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN 142 (477)
Q Consensus 82 ~~~~~~~~~~~~----------~~~~~---------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~ 142 (477)
....+...+..+ ...+. .....++.+|++.|+|.+++||||++.|..-|-+++......+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k- 450 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK- 450 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-
Confidence 543322211000 00000 1122567799999999999999999999887766544333222
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHhcC-CccCCe-EEEEEEcCC
Q 011796 143 TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVEVKRAVP 183 (477)
Q Consensus 143 tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr-~l~V~~a~~ 183 (477)
.+-+|++.++++|+|..|+..++ +.+... .|+|++++.
T Consensus 451 ---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 451 ---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ---CcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23399999999999999988877 777554 899999764
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=4.5e-14 Score=129.98 Aligned_cols=84 Identities=23% Similarity=0.465 Sum_probs=79.6
Q ss_pred CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 99 ~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
++..+....|.|.||.+.++.++|+.+|++||.|-+|.|+.|+.|.+++|||||.|.+..+|++|++.|+ .+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3445677899999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred EEEcC
Q 011796 178 VKRAV 182 (477)
Q Consensus 178 V~~a~ 182 (477)
|.+|+
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99987
No 63
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=5.5e-13 Score=127.30 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEee
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~ 79 (477)
|..+-.+|||.||++++||++|++||+.||+|++|+|++|. +.++||||+|+++++|+.|+ +++..|.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 67788999999999999999999999999999999999985 45679999999999999999 999999999999988
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
....
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 7643
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.2e-13 Score=130.01 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=71.8
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k 184 (477)
.++|||+|||+.+||+||+++|+.||+|++|+|+.|++ .++||||+|+++++|++||.+.+..|.+++|+|+++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999999864 478999999999999999976559999999999998755
Q ss_pred CC
Q 011796 185 EF 186 (477)
Q Consensus 185 ~~ 186 (477)
+.
T Consensus 81 ~~ 82 (260)
T PLN03120 81 QL 82 (260)
T ss_pred CC
Confidence 43
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=121.21 Aligned_cols=160 Identities=14% Similarity=0.284 Sum_probs=112.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEee-cCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC---CeEEEEe
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMR-DRATGRARGFGFVVFADPAVAERVI--MDKHMID---GRTVEAK 78 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~-d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~---Gr~l~V~ 78 (477)
-+||||.+||.|+...||..||.+|--.+.+.|.. ++.....+-+|||.|.+..+|.+|+ +|+..|+ +..|.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 68999999999999999999999986666666644 2332335679999999999999999 8988887 5677777
Q ss_pred ecCCcchhhhh--cc-------------CC--------CC---------C---C--C-----------------------
Q 011796 79 KAVPRDDQNML--NR-------------NT--------SS---------I---H--S----------------------- 98 (477)
Q Consensus 79 ~a~~~~~~~~~--~~-------------~~--------~~---------~---~--~----------------------- 98 (477)
.++...+.... .. .. .+ . . .
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 66443221110 00 00 00 0 0 0
Q ss_pred ----------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 99 ----------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 99 ----------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
......+.+|||.||..+||||+|+.+|+.|--...++|... .+ ...|||+|++.|.|..|+..+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhh
Confidence 000112247999999999999999999999976666666422 12 3379999999998888885544
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3e-13 Score=115.89 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=76.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.++.+|||+||.+.++||+|.++|+++|+|+.|.+-.|+.+..+.|||||+|.+.++|+.|++.++ ..|+.++|.|++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 357799999999999999999999999999999999999999999999999999999999999999 8999999999986
Q ss_pred CC
Q 011796 182 VP 183 (477)
Q Consensus 182 ~~ 183 (477)
--
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=2.4e-13 Score=138.57 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCH--HHHHHHH--HcCCccCCeEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP--AVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~--e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
...+|||+||++++++++|+++|.+||.|.+|.|+ +.|+ ||||||+|.+. +++++|| +++.+++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999999 4466 99999999987 6789999 999999999999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9885
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.4e-13 Score=129.02 Aligned_cols=87 Identities=24% Similarity=0.505 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
.+.-+||||.-|+.+++|.+|++.|+.||+|+.|+|++|+.|+++||||||||+++.+...|. .+..+|+++.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 356799999999999999999999999999999999999999999999999999999999999 778999999999998
Q ss_pred cCCcchhhh
Q 011796 80 AVPRDDQNM 88 (477)
Q Consensus 80 a~~~~~~~~ 88 (477)
...+...-+
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 766554433
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.7e-13 Score=115.35 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+++++|||+||+.-++||+|.|||++||+|..|++=.|+.+.++-|||||+|-+.++|+.|| ++...++.+.|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999 9999999999999886
Q ss_pred CC
Q 011796 81 VP 82 (477)
Q Consensus 81 ~~ 82 (477)
.-
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 70
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=2e-13 Score=142.06 Aligned_cols=80 Identities=35% Similarity=0.657 Sum_probs=77.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
+.|||+|||++++||+|.++|++.|.|.+++++.|++|+++|||+||+|.++++|++|+ ++..++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999999999776
Q ss_pred ch
Q 011796 84 DD 85 (477)
Q Consensus 84 ~~ 85 (477)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4e-12 Score=125.63 Aligned_cols=178 Identities=15% Similarity=0.321 Sum_probs=134.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
.-.+|||-.+..|.+|+||+..|+.||+|+.|.+.+++.+...|||+||||.+..+-.+|+ +|-..+.|..|.|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999 88888899999987664
Q ss_pred Ccchhhh----------------------------h---------------cc-------------------CC------
Q 011796 82 PRDDQNM----------------------------L---------------NR-------------------NT------ 93 (477)
Q Consensus 82 ~~~~~~~----------------------------~---------------~~-------------------~~------ 93 (477)
.....-. . .. .+
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 3311000 0 00 00
Q ss_pred ------------------------------------------CCC------CCC------------------CCCCcccc
Q 011796 94 ------------------------------------------SSI------HSS------------------PGPGRTKK 107 (477)
Q Consensus 94 ------------------------------------------~~~------~~~------------------~~~~~~~~ 107 (477)
... ... -....++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 000 000 00122345
Q ss_pred eeecCC--CCCCCH---HHHHHHhhhcCcEEEEEEEecCCCCCc----ceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 108 IFVGGL--ASTVTE---SDFKKYFDQFGTITDVVVMYDHNTQRP----RGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 108 lfV~nL--p~~~te---edL~~~F~~~G~V~~v~i~~d~~tg~~----rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
|.++|. |.+++| .+|++.+.+||.|.+|.|...+.+..- -=--||+|....++.+|++.++ ..|.||+|.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 667775 555554 588999999999999999887765421 1247999999999999999999 889999887
Q ss_pred EEEc
Q 011796 178 VKRA 181 (477)
Q Consensus 178 V~~a 181 (477)
....
T Consensus 529 AE~Y 532 (544)
T KOG0124|consen 529 AEVY 532 (544)
T ss_pred hhhh
Confidence 6554
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=125.42 Aligned_cols=79 Identities=34% Similarity=0.720 Sum_probs=76.1
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
..+|||+|||+.+|+++|+++|.+||.|..|.|+.|+.+++++|||||+|.++++++.|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 899999999999653
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.3e-12 Score=99.20 Aligned_cols=70 Identities=36% Similarity=0.696 Sum_probs=64.8
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
+|+|.+||+++++++|+++|++||+|.+++++.++ +.++++|||+|.++++|++|+ +++..|.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 678999999999999999999 77788999998874
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=5.3e-13 Score=122.96 Aligned_cols=80 Identities=34% Similarity=0.581 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+....|.|-||.+.++.++|+.+|++||.|.+|.|.+|+.|..++|||||.|.+..+|++|+ |+..+|+++.|.|..|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 35688999999999999999999999999999999999999999999999999999999999 9999999999998876
Q ss_pred CC
Q 011796 81 VP 82 (477)
Q Consensus 81 ~~ 82 (477)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 43
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=1.1e-11 Score=125.07 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=65.1
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
++|||+|||+++||+.|++-|..||.|+.+.|+.. +++|| .|.|.++++|++|+..++ ..|++|.|+|++.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 57999999999999999999999999999999643 66776 899999999999999999 8999999999863
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=3.8e-12 Score=97.97 Aligned_cols=71 Identities=34% Similarity=0.687 Sum_probs=66.3
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
+|+|.+||..+++++|+++|++||+|+.++++.++ +.++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999877 6788999999999999999999988 89999999874
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.6e-12 Score=117.24 Aligned_cols=76 Identities=21% Similarity=0.522 Sum_probs=70.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+||+..+++.||+.+|.+||+|..|+|.+. +.|||||||+++.+|+.|+..|+ ++|.|..|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4679999999999999999999999999999999864 46899999999999999999999 99999999999987
Q ss_pred CC
Q 011796 183 PK 184 (477)
Q Consensus 183 ~k 184 (477)
-+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3e-12 Score=98.09 Aligned_cols=69 Identities=35% Similarity=0.739 Sum_probs=64.3
Q ss_pred EcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 10 IGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 10 VgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
|.+||+++++++|+++|++||+|.+++++.++.+++++++|||+|.+.++|++|+ +++..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999998888999999999999999999999 77788999998873
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3.9e-12 Score=97.46 Aligned_cols=70 Identities=36% Similarity=0.721 Sum_probs=66.0
Q ss_pred ecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 110 VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 110 V~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
|.+||..+++++|+++|++||.|+.|+|..++.+.+++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999998888999999999999999999999998 88999999874
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=5.8e-12 Score=127.61 Aligned_cols=120 Identities=22% Similarity=0.394 Sum_probs=92.0
Q ss_pred eCCHHHHHHHHHcCCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEE
Q 011796 54 FADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTIT 133 (477)
Q Consensus 54 F~~~e~A~kAl~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~ 133 (477)
..++|+|.++|+... +-.|.|+....+..-... .-..+.+...+.|||+.||.++.||||.-+|++.|+|-
T Consensus 41 ~~~~eaal~al~E~t---gy~l~ve~gqrk~ggPpP------~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~ 111 (506)
T KOG0117|consen 41 VQSEEAALKALLERT---GYTLVVENGQRKYGGPPP------GWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIY 111 (506)
T ss_pred cccHHHHHHHHHHhc---CceEEEeccccccCCCCC------cccCCCCCCCceEEecCCCccccchhhHHHHHhcccee
Confidence 345688888884443 345677665544321111 11222235678899999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc-CCeEEEEEEcC
Q 011796 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-NGKMVEVKRAV 182 (477)
Q Consensus 134 ~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l-~Gr~l~V~~a~ 182 (477)
+++|++|+.++..||||||+|.+.++|++||+.++ ++| .||.|.|..+.
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 99999999999999999999999999999999998 665 67777766543
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-12 Score=121.63 Aligned_cols=85 Identities=29% Similarity=0.518 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
|..+.++|||++|..+++|.-|...|-+||+|++|.|+.|..+.+.|+|+||+|...|+|.+|+ +|..+|.||.|.|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
+++|...
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9988643
No 82
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-12 Score=121.54 Aligned_cols=87 Identities=32% Similarity=0.621 Sum_probs=81.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+.|..+|||.-|...|=+||.|++|.|+.|.++++.|||+||+|+..|+|.+||..|+ .+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456799999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCCCC
Q 011796 182 VPKEFSPG 189 (477)
Q Consensus 182 ~~k~~~~~ 189 (477)
+|.+-+..
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 98765443
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.7e-12 Score=115.69 Aligned_cols=76 Identities=28% Similarity=0.514 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
-.++|||+||+.++++.||+.+|..||+|.+|-|.+.+ .|||||||+|+.+|+.|+ |+...|.+..|.|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999888754 479999999999999999 99999999999998876
Q ss_pred Ccc
Q 011796 82 PRD 84 (477)
Q Consensus 82 ~~~ 84 (477)
-+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 553
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=3.3e-12 Score=130.39 Aligned_cols=78 Identities=22% Similarity=0.463 Sum_probs=71.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHhcC-CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE--EAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~--e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
....+|||+||++.+|++||+++|..||.|++|.|+ ++++ ||||||+|.+. +++++||+.++ .++.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456799999999999999999999999999999999 4455 99999999976 78999999999 89999999999
Q ss_pred EcCCC
Q 011796 180 RAVPK 184 (477)
Q Consensus 180 ~a~~k 184 (477)
.|+|.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99864
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.6e-12 Score=125.73 Aligned_cols=79 Identities=27% Similarity=0.592 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
.-++|+|.|||+.+-|.||+..|++||+|.+|+|+.+.. -+|||+||.|+++++|++|. +|+..|+||+|+|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 468999999999999999999999999999999999853 48999999999999999999 99999999999999998
Q ss_pred Ccc
Q 011796 82 PRD 84 (477)
Q Consensus 82 ~~~ 84 (477)
.+.
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 884
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=5.1e-11 Score=119.57 Aligned_cols=171 Identities=18% Similarity=0.296 Sum_probs=127.0
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHH--HcCCccC--CeEEEEeecC
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGF-GFVVFADPAVAERVI--MDKHMID--GRTVEAKKAV 81 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~-aFVeF~~~e~A~kAl--~~~~~i~--Gr~l~V~~a~ 81 (477)
+++|.++-+.++-|-|..+|++||.|..|.-..+. -+| |.|+|.|++.|..|. +++..|- -+.|+|.+++
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 67899999999999999999999999887765532 234 999999999999998 7777664 3566665543
Q ss_pred CcchhhhhccCC---------CCC--------------------------------------CCCCCCCcccceeecCCC
Q 011796 82 PRDDQNMLNRNT---------SSI--------------------------------------HSSPGPGRTKKIFVGGLA 114 (477)
Q Consensus 82 ~~~~~~~~~~~~---------~~~--------------------------------------~~~~~~~~~~~lfV~nLp 114 (477)
-.......+..+ ... .....+.....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 221110000000 000 000001124678888885
Q ss_pred -CCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 115 -STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 115 -~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
+.+|.|.|-.+|.-||.|.+|+|+.++.. -|+|++.+...|+-|++.++ +.|.+++|+|.+++.....
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 56899999999999999999999988753 69999999999999999999 8999999999998865543
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.7e-12 Score=133.54 Aligned_cols=181 Identities=23% Similarity=0.428 Sum_probs=145.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcc-----------C-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCC
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRY-----------G-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKH 68 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~-----------G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~ 68 (477)
....++++|.+||..++|+.+..+|..- | .|+.+.|-.. +.||||+|.+.++|..|+ ++..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccch
Confidence 3467899999999999999999999753 2 2555666444 449999999999999999 8888
Q ss_pred ccCCeEEEEeecCCcchhhhhccC-------CCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecC
Q 011796 69 MIDGRTVEAKKAVPRDDQNMLNRN-------TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141 (477)
Q Consensus 69 ~i~Gr~l~V~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~ 141 (477)
.+.++++++............... ..............+|||++||..+++++++++.+.|++++...+++|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 899999988766544332211111 1112223334566899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 011796 142 NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 142 ~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~~ 188 (477)
.++.+++|||.+|.+......|+.-++ ..+.+++|.|..|.+-....
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 999999999999999999999999999 89999999999998765544
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.2e-11 Score=118.29 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=71.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
...+|||.||++.+||+||+++|+.||+|++|+|++|.. .++||||+|+++++++.||.+.+..|.+++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 357899999999999999999999999999999999854 45799999999999999998777999999999999775
Q ss_pred CCC
Q 011796 184 KEF 186 (477)
Q Consensus 184 k~~ 186 (477)
...
T Consensus 81 y~~ 83 (243)
T PLN03121 81 YED 83 (243)
T ss_pred ccc
Confidence 443
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.2e-11 Score=94.21 Aligned_cols=73 Identities=33% Similarity=0.709 Sum_probs=67.7
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
+|+|.+||..+++++|+++|+.|+.|+.+.+..++.+ +++++|||+|.+.++|+.|++.++ ..+++++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988775 778999999999999999999999 669999999864
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=101.15 Aligned_cols=81 Identities=17% Similarity=0.383 Sum_probs=73.5
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
++.++.|||+|||+.+|.|++.++|.+||+|..|+|-..++| +|.|||.|++..+|++|++++. ..++++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 356778999999999999999999999999999999887765 7899999999999999999999 899999999988
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
-.+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 76544
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.5e-11 Score=93.86 Aligned_cols=72 Identities=36% Similarity=0.703 Sum_probs=66.1
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+|+|.+||+++++++|+++|+.|++|..+.++.++.+ +.+++|||+|.++++|+.|+ ++...+.+++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988765 78999999999999999999 777779999998863
No 92
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=7.1e-13 Score=119.95 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+|+.-|||++||++.||.||.-+|++||+|++|.|++|+.||+++||||+.|+|..+...|+ +|+..|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 57788999999999999999999999999999999999999999999999999999998888 9999999999999765
Q ss_pred CC
Q 011796 81 VP 82 (477)
Q Consensus 81 ~~ 82 (477)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 93
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=5.6e-12 Score=114.35 Aligned_cols=80 Identities=26% Similarity=0.473 Sum_probs=76.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
+...+|||+||+..++++.|.++|-+.|+|++|+|++|+.++..+|||||||.++|+|+-|++-++ .+|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 355699999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred C
Q 011796 182 V 182 (477)
Q Consensus 182 ~ 182 (477)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=123.07 Aligned_cols=178 Identities=19% Similarity=0.293 Sum_probs=129.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
+++.-|..+.|||..++.+|..||+-.-.+.-.+.+.....++-.+.+.|.|.|+|.-+.|+ .+++.+..+.|+|..+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 56777889999999999999999986533333333333334677789999999999999999 88888999999999887
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcC----cEEEEEEEecCCCCCcceEEEEEeCCH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG----TITDVVVMYDHNTQRPRGFGFITYDSE 157 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G----~V~~v~i~~d~~tg~~rG~aFVeF~s~ 157 (477)
..+-.....-.............--.|.+++||+++++.|+.++|...- .++.|-+++.++ +++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCH
Confidence 7644322111111111111112234678899999999999999996432 344565555544 89999999999999
Q ss_pred HHHHHHHHhcCCccCCeEEEEEEc
Q 011796 158 EAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 158 e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
++|++||.++...|.-|.|+|-++
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999877777777776543
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.6e-11 Score=110.13 Aligned_cols=76 Identities=17% Similarity=0.441 Sum_probs=68.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+++|||+|||.++.|.||+++|-+||.|.+|.+... ..+..||||+|+++.+|+.||.-.+ -++++..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4678999999999999999999999999999988543 3345699999999999999999888 89999999999975
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1e-11 Score=107.43 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=75.2
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCcc
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRD 84 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~~ 84 (477)
.|||.+|.+++||++|.+.|..||+|++|.|-.|+.|+-.||||+|+|++.++|++|+ +|...|.+.+|+|.|+..+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 6999999999999999999999999999999999999999999999999999999999 99999999999999996654
Q ss_pred h
Q 011796 85 D 85 (477)
Q Consensus 85 ~ 85 (477)
.
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 3
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=106.06 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=78.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.....|||.++.+.+||+||.+.|..||+|+.|++-.|+-|+..||||+|+|++.+.|++||+.++ .+|.+..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
--+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 75543
No 98
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.22 E-value=9.7e-12 Score=124.49 Aligned_cols=89 Identities=47% Similarity=0.795 Sum_probs=83.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
..++|||+.|+|+++||.|++.|.+||+|.+|.|++|+.++++|+|+||+|++++.+.++|....|.|+++.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 011796 184 KEFSPGPSR 192 (477)
Q Consensus 184 k~~~~~~~r 192 (477)
++......+
T Consensus 85 r~~~~~~~~ 93 (311)
T KOG4205|consen 85 REDQTKVGR 93 (311)
T ss_pred ccccccccc
Confidence 987665443
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.20 E-value=1.4e-10 Score=115.15 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=123.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH----HcCCccCCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~l~V~~a 80 (477)
+-.|.|++|-..++|.+|.|-++.||+|..+..|..+. .|.|||+|.+.|+.++ .+...|.+..-.+.++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 45689999999999999999999999999888877543 6999999999999998 4556677776666665
Q ss_pred CCcchhhhhccCCCCCCCCCCCCccccee--ecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIF--VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e 158 (477)
..+.-+... .. .....+.|. |-|--+.+|.|-|..++..+|+|.+|.|++.. +- .|.|||++.+
T Consensus 105 tsq~i~R~g-------~e--s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gV---QAmVEFdsv~ 170 (494)
T KOG1456|consen 105 TSQCIERPG-------DE--SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GV---QAMVEFDSVE 170 (494)
T ss_pred hhhhhccCC-------CC--CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--ce---eeEEeechhH
Confidence 433222111 01 111233333 44555779999999999999999999999762 33 5999999999
Q ss_pred HHHHHHHhcC-CccC-C-eEEEEEEcCCCCC
Q 011796 159 AVDRVLHKTF-HELN-G-KMVEVKRAVPKEF 186 (477)
Q Consensus 159 ~a~~Al~~~~-~~l~-G-r~l~V~~a~~k~~ 186 (477)
.|++|.+.++ .+|- | ..|+|++|+|.+.
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCccee
Confidence 9999999999 5553 3 5688888887654
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=9.2e-13 Score=142.26 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=130.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
++..++||.||+..+.+++|+++|.+++.+..+.|....++++.||+|||+|.+++++.+|+ ++...+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45678999999999999999999999998888877766667899999999999999999999 44444333
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
..+|+|.++|+..|.++|+.+|.+++.+++++++..+. ++++|.|+|.|.++.++.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhh
Confidence 23689999999999999999999999999999887776 899999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
+++...+ ..+.-+.++|....|...+
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred hhcccchhhhhhhcCccccccCCcccc
Confidence 9998888 6777888888887664433
No 101
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=6.8e-11 Score=97.96 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.++.|||+|||+++|.|++-++|.+||.|..|+|=.++. .+|-|||.|++..+|++|+ ++...++++.|.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578899999999999999999999999999999977654 5899999999999999999 9999999999999888
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.+....
T Consensus 93 q~~~~~ 98 (124)
T KOG0114|consen 93 QPEDAF 98 (124)
T ss_pred CHHHHH
Confidence 775543
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.5e-12 Score=115.51 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
++.-|||++||+++||.||..+|++||+|++|.+++|+.|++++||||+.|++..+..-|+.-++ ..|.+|.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999999999999999999999999999999888 89999999998755
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=3.8e-11 Score=125.21 Aligned_cols=80 Identities=28% Similarity=0.592 Sum_probs=77.2
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
..|||+|+|++++||+|.++|+..|.|.+++++.|++|+++|||+|++|.+++++++|++.++ .++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999 9999999999998754
Q ss_pred C
Q 011796 185 E 185 (477)
Q Consensus 185 ~ 185 (477)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.18 E-value=2e-11 Score=121.70 Aligned_cols=177 Identities=21% Similarity=0.293 Sum_probs=145.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcC-CccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDK-HMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~-~~i~Gr~l~V~~a~ 81 (477)
..+++|++++.+.+.+.++..++.+.|.+..+.+........+++++.|.|+.++.+..|| +.. ..+..+.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 5789999999999999999999999999888888776667889999999999999999999 555 46677777766665
Q ss_pred CcchhhhhccCCCCCCCCCCCCccccee-ecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIF-VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf-V~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.+..+.... ..........++| |.+|++.+++++|+.+|..++.|..|+++.++.+..+++|++|+|.+.+..
T Consensus 167 ~~~~~~~n~------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRPKNK------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccch------hcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 554211100 0011112344555 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccCCeEEEEEEcCCCCC
Q 011796 161 DRVLHKTFHELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 161 ~~Al~~~~~~l~Gr~l~V~~a~~k~~ 186 (477)
.+++....+.+.++++.|.+..+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHHhhcccCcccCcccccccCCCCcc
Confidence 99998833899999999999887654
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=8.2e-12 Score=116.12 Aligned_cols=147 Identities=24% Similarity=0.277 Sum_probs=118.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+..++|||.||...++||-|.|+|-+-|+|+.|+|..+++ .+.| ||||+|+++..+.-|+ +|...+.+++|+|+.-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4578999999999999999999999999999999988876 6677 9999999999999998 7888887777766432
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.-... ..|...++++.+.+.|+.-++++.+++..+.+ ++.+-+.||++....+.
T Consensus 85 ~G~sh-------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 CGNSH-------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAV 138 (267)
T ss_pred cCCCc-------------------------chhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcC
Confidence 21100 02566789999999999999999999999877 78888999999887777
Q ss_pred HHHHHhcC-CccCCeEEE
Q 011796 161 DRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~ 177 (477)
-.++.... ..+.-+++.
T Consensus 139 P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 139 PFALDLYQGLELFQKKVT 156 (267)
T ss_pred cHHhhhhcccCcCCCCcc
Confidence 77776654 343333333
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.13 E-value=1.6e-09 Score=107.74 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=128.8
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|-+|... +..+.|..+|-.||.|+.|++|+.+. |-|+||+.|+.++++|+ +++..+.|.+|+|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4578999999876 88899999999999999999999764 57999999999999999 9999999999999887
Q ss_pred CCcchhhh----------------hccCC---C--CCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCc-EEEEEEE
Q 011796 81 VPRDDQNM----------------LNRNT---S--SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVM 138 (477)
Q Consensus 81 ~~~~~~~~----------------~~~~~---~--~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~-V~~v~i~ 138 (477)
+....... ..++. . .........+++.|+.-|.|..+|||.|.++|..... -++|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 55422111 00000 0 0011122356788999999999999999999977553 3566666
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHhcCC-ccCCe------EEEEEEcCCC
Q 011796 139 YDHNTQRPRGFGFITYDSEEAVDRVLHKTFH-ELNGK------MVEVKRAVPK 184 (477)
Q Consensus 139 ~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~-~l~Gr------~l~V~~a~~k 184 (477)
.-+. -+ .-.+++||++.++|..||.+++| .|++. .|++-++.++
T Consensus 441 p~ks-er-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 441 PLKS-ER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred cccc-cc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 5553 22 23689999999999999999984 55442 3455555444
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2.4e-10 Score=90.04 Aligned_cols=60 Identities=23% Similarity=0.493 Sum_probs=54.7
Q ss_pred HHHHHHHhh----hcCcEEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 119 ESDFKKYFD----QFGTITDVV-VMYDHNT--QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 119 eedL~~~F~----~~G~V~~v~-i~~d~~t--g~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
+++|+++|+ +||.|.+|. |+.++.+ +++|||+||+|+++++|++|++.++ ..+++++|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 7777776 8899999999999999999999998 8999999986
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-10 Score=114.97 Aligned_cols=85 Identities=20% Similarity=0.349 Sum_probs=78.3
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
..+...|||..|.+-+|++||+-+|+.||+|+.|.|++|..|+.+--||||||++.+++++|.-+|+ ..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3466799999999999999999999999999999999999999999999999999999999998888 899999999998
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
+..-.+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 764433
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=3.8e-10 Score=88.96 Aligned_cols=59 Identities=34% Similarity=0.527 Sum_probs=53.5
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 19 EERLKEYFS----RYGEVVEAV-IMRDRAT--GRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 19 ee~Lre~F~----~~G~V~~v~-i~~d~~t--g~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
+++|+++|+ +||+|.+|. |+.++.+ +++|||+||+|.++++|++|+ +++..++++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777666 899999999999999999999 8999999999976
No 110
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-09 Score=113.10 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=69.6
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k~ 185 (477)
..|||.|||.++++++|+++|++||.|+...|....-..+..+|+||+|++.++++.||++....|.+++|.|+..++.-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999888765422333389999999999999999999899999999999877543
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=5.9e-10 Score=83.67 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=49.6
Q ss_pred HHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 122 L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
|+++|++||+|++|++.+++ +++|||+|.+.++|++|++.++ ..+.+++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998665 4699999999999999999888 8999999999985
No 112
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=2.7e-10 Score=110.14 Aligned_cols=72 Identities=22% Similarity=0.554 Sum_probs=67.8
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
.+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||+.+++.+++.||..++ -+|++..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 99999999999999999887 6999999999999877
Q ss_pred C
Q 011796 185 E 185 (477)
Q Consensus 185 ~ 185 (477)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=1.7e-09 Score=81.16 Aligned_cols=54 Identities=35% Similarity=0.662 Sum_probs=48.9
Q ss_pred HHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 22 LKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 22 Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
|+++|++||+|+++++.++. +++|||+|.+.++|++|+ +++..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 579999999999999999 8999999999999875
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=5.2e-10 Score=106.89 Aligned_cols=83 Identities=30% Similarity=0.521 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.|-|+|||-.||.++.+.||.+.|-+||.|++.++..|+.|..+|.|+||.|.++.+|+.|| +|...|.-|+|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999 9999999999999888
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.||+.
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 87754
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-09 Score=108.25 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
......|||-.|.+-+|+|+|.-+|+.||+|++|.|++|..|+.+.-||||||.+.++.++|. |++..|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456789999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+..-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 75543
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.92 E-value=5.5e-10 Score=106.25 Aligned_cols=166 Identities=19% Similarity=0.337 Sum_probs=123.1
Q ss_pred EEEcCCCccCcHHH-H--HHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 8 LFIGGISWDTDEER-L--KEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 8 LfVgnLP~~~tee~-L--re~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
+++.++=.++..+- | ...|+.+-.++..+++++.. ..-++++|+.|++.....++- .++++|.-++|++.....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 34444444444433 2 56677666666677777665 567889999999888777776 555566555555544433
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~ 162 (477)
.++....+ -.....+||.+.|-.+++++.|...|.+|-.-...++++|+-|++++||+||.|.+.+++.+
T Consensus 178 wedPsl~e----------w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 178 WEDPSLAE----------WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred cCCccccc----------CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHH
Confidence 33322211 12356689999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhcC-CccCCeEEEEEEcCCC
Q 011796 163 VLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 163 Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
|+.+++ +.+..|+|++....-+
T Consensus 248 Amrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 248 AMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred HHHhhcccccccchhHhhhhhHH
Confidence 999999 8999999987655433
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.88 E-value=3.6e-09 Score=113.64 Aligned_cols=107 Identities=18% Similarity=0.345 Sum_probs=86.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
++||||+.|++.++|+||+.+|++||+|++|+++.. |+||||.+....+|++|| ++++.+..+.|+|.|+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999764 579999999999999999 889999999999999987
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhh
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQ 128 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~ 128 (477)
+......+.. -...|=|.-|||+.-.+||+.+++.
T Consensus 495 ~G~kse~k~~-----------wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 495 KGPKSEYKDY-----------WDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred CCcchhhhhh-----------hhcccCeeEeehHhcCHHHHHhhhh
Confidence 7544311100 0112445667877666667777754
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=1.5e-09 Score=118.20 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=126.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
..+++||++||+.++++.+|+..|.++|.|++|.|..-+. ++-.-|+||.|.+.+.+-+|+ +....|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4688999999999999999999999999999999876543 444559999999999988887 5555554444444433
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.++ ...++.|+|+.|..++....|...|..||+|..|.+-+... ||+|.|++...+
T Consensus 449 ~~k------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~------yayi~yes~~~a 504 (975)
T KOG0112|consen 449 QPK------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP------YAYIQYESPPAA 504 (975)
T ss_pred ccc------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc------ceeeecccCccc
Confidence 321 13567899999999999999999999999999988754433 999999999999
Q ss_pred HHHHHhcC-CccC--CeEEEEEEcCCCCC
Q 011796 161 DRVLHKTF-HELN--GKMVEVKRAVPKEF 186 (477)
Q Consensus 161 ~~Al~~~~-~~l~--Gr~l~V~~a~~k~~ 186 (477)
++|++.+- .-|. .++|.|.+|.+.-.
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 99998776 4443 36799999886554
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.82 E-value=1e-08 Score=110.29 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=72.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.-+++|||+.|+..++|+||+++|+.||+|++|.++.. |++|||+..+.++|++||+++. ..+..+.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999999999999744 6799999999999999999998 8999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
.-+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 8665443
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.78 E-value=3.8e-08 Score=91.45 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...-++|..||.-+.|.+|..+|.++ |.|..+++-+++.||.+|+||||||+++|.|+-|- ||+-.+.++.|+|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45668999999999999999999988 78888888899999999999999999999999888 9999999999999887
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 665
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=98.60 Aligned_cols=81 Identities=30% Similarity=0.607 Sum_probs=70.8
Q ss_pred CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CccCCeEE
Q 011796 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMV 176 (477)
Q Consensus 99 ~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~--~~l~Gr~l 176 (477)
++.....++|||++|-..++|.||+++|.+||+|+.|+++..+ +.|||+|.+.++|++|.++.. ..|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3334456799999999999999999999999999999998664 389999999999999988876 68999999
Q ss_pred EEEEcCCCC
Q 011796 177 EVKRAVPKE 185 (477)
Q Consensus 177 ~V~~a~~k~ 185 (477)
+|.|..+++
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999998843
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.1e-08 Score=99.40 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH---HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~Gr~l~V~~ 79 (477)
+..++|||++|-..++|.+|+++|.+||+|..|+++..+ ++|||+|.+.++|++|. .++..|+|++|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999998899999999999999999999998764 39999999999999998 778899999999999
Q ss_pred cCC
Q 011796 80 AVP 82 (477)
Q Consensus 80 a~~ 82 (477)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 998
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.73 E-value=2e-08 Score=106.73 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=127.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
-.|.+.+-++..++.+++.|+++||... .|..+.|..+....-..|-++|+|....++.+|+ .+...+-.|.|+|..+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 3578899999999999999999999753 3444555555543444788999999999999999 5566666888888766
Q ss_pred CCcchhhhhccC-------CCCCCC----------------CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEE-EE
Q 011796 81 VPRDDQNMLNRN-------TSSIHS----------------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VV 136 (477)
Q Consensus 81 ~~~~~~~~~~~~-------~~~~~~----------------~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~-v~ 136 (477)
............ ....+. .........|||..||..+++.++.++|+..-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 444321110000 000000 011234568999999999999999999999888888 55
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 137 i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
|.+-+ +.+.++-|||+|..++++.+|+.... +.+..|.|+|.-.
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 55544 46778899999999777777766555 7788888888643
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=3.8e-08 Score=102.48 Aligned_cols=78 Identities=26% Similarity=0.584 Sum_probs=73.7
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
+.|+|..|...+...||+++|++||+|+-.+|+.+.-+.-.|+|+||++.+.++|.+||+.++ .+|.|++|.|..++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 579999999999999999999999999999999998888889999999999999999999999 899999999998764
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=6.3e-08 Score=93.77 Aligned_cols=84 Identities=25% Similarity=0.450 Sum_probs=76.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
....+|.|.|||+.|+++||+++|++|+.++.+.|.+|+. +++.|.|-|.|+..++|++|++.++ ..|+|+++++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3457899999999999999999999999999999999986 8899999999999999999999999 8999999999988
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 766554
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=7.9e-08 Score=89.32 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=73.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhc-CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~-G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
.....++|..+|.-+.|.+|..+|.+| |.|.++++.+++.|+.+||||||+|+++|.|+-|.+.|| -.|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 455678999999999999999999988 788888999999999999999999999999999999988 788899999988
Q ss_pred cCCC
Q 011796 181 AVPK 184 (477)
Q Consensus 181 a~~k 184 (477)
--|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 5443
No 127
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.66 E-value=4.1e-08 Score=102.14 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
+-.+|||+|||.++++++|+++|..||+|+...|......++...|+||+|.+.++++.|| .+...|.+++|.|+...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4456999999999999999999999999999998876533455599999999999999999 778889999999987655
Q ss_pred c
Q 011796 83 R 83 (477)
Q Consensus 83 ~ 83 (477)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.64 E-value=7.1e-08 Score=90.92 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=72.0
Q ss_pred cccceeecCCCCCCCHHHHHH----HhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKK----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~----~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
+..+|||.||++.+..++|++ +|++||+|.+|...+. .+.||-|||.|++.+.|-.|+..++ .-+-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 9999999999999854 6789999999999999999999998 8899999999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
.+|+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99986653
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=7e-08 Score=100.52 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=73.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.+.|+|.+|+..+-..+|+.||++||+|+-++|+.+..+.-.|.|+||.+.+.++|.+|| ++.++|+++.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999999999888889999999999999999999 999999999999988743
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=3.5e-07 Score=76.49 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=66.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC----CeEEE
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID----GRTVE 76 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~----Gr~l~ 76 (477)
.+||+|+|||-..|.++|.+++.+. +...-+-|+.|-.+..+.|||||.|.++++|.+.. .+++.+. .|.++
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999999763 66777888999889999999999999999999887 6666553 45666
Q ss_pred EeecCCcch
Q 011796 77 AKKAVPRDD 85 (477)
Q Consensus 77 V~~a~~~~~ 85 (477)
|.+|.-+..
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 766655433
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.1e-07 Score=90.18 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|+|.|||+.++++||+|||++|++++.+.|..++. +++.|.|=|.|...++|++|+ ++...++++.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3457899999999999999999999999998888888875 999999999999999999999 8889999999998877
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65443
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.3e-07 Score=91.50 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=76.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
..+.+.+||+|+.+.+|.++++.+|+.|+.|..|.|++|+.++.+|+|+||+|++.+.++.||+....+|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 35677899999999999999999999999999999999999989999999999999999999994449999999999988
Q ss_pred CCC
Q 011796 182 VPK 184 (477)
Q Consensus 182 ~~k 184 (477)
+-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=4.5e-08 Score=91.47 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=71.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
+..++|||.|+...|+|+-|.++|-+-|+|.+|.|..+++ +++| ||||+|+++-.+.-|++.++ .+|.++.|.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4567999999999999999999999999999999999887 5667 99999999999999999999 8999999998875
Q ss_pred C
Q 011796 182 V 182 (477)
Q Consensus 182 ~ 182 (477)
+
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 5
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=8.7e-08 Score=100.27 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=109.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
..+++|+|-|||.++++++|+++|+.||+|.+|+..+ ..++.+||+|-|.-+|++|+ ++..+|.++.|+....
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 4689999999999999999999999999999966544 34689999999999999999 8999999998883222
Q ss_pred CCcchhhhhc-----cCC-CCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEe
Q 011796 81 VPRDDQNMLN-----RNT-SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (477)
Q Consensus 81 ~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF 154 (477)
..+....... ... ......+..-..-.+|+- |++.++..-++.+|..++.++. +..-... -.-||+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-----hq~~~~~ 220 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-----HQRFVEF 220 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchh-----hhhhhhh
Confidence 2211111000 000 011111111112233333 8888888777788888887665 3221111 1467888
Q ss_pred CCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 155 DSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 155 ~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
.+..++..++......+.+....+++..+
T Consensus 221 ~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCCceecCCCCceEEecCC
Confidence 88777755554333566666666666654
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.43 E-value=3.9e-06 Score=89.68 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=63.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVE-AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~-v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...|||..||..+++.++.++|...-.|++ |.|.+-+ +.+.++.|||+|..++++.+|+ .+++.+.-|.|.|+..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 357999999999999999999998878888 4454444 5888999999999999888887 7778888888888655
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=2.7e-07 Score=89.33 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+-+.+.|||+|+...+|.++|..+|+.|+.|..+.|.+|+.++.+|+|+||+|.+.+.+++++ ++...|.++.++|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 357899999999999999999999999999999999999999999999999999999999999 8999999999999876
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 554
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.41 E-value=4e-08 Score=99.28 Aligned_cols=148 Identities=22% Similarity=0.370 Sum_probs=118.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc-CCccCCeEEEEeecCC
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD-KHMIDGRTVEAKKAVP 82 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~-~~~i~Gr~l~V~~a~~ 82 (477)
.+|||+||.+.++.++|+.+|...-.-.+-.++. -.+|+||.+.|..+|.+|+ ++ +.++.|+.++|+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999997642111112222 1369999999999999999 44 5688999999999888
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEE-ecCCCCCcceEEEEEeCCHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM-YDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~-~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
+.. .++++-|+|+|....++.|..++..|+.|+.|.++ .|.++- ..-|+|.+.+.++
T Consensus 76 kkq------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~ 133 (584)
T KOG2193|consen 76 KKQ------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHR 133 (584)
T ss_pred HHH------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHH
Confidence 754 35568999999999999999999999999998653 344421 3457788899999
Q ss_pred HHHHhcC-CccCCeEEEEEEc
Q 011796 162 RVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.||++++ +.|....++|.+-
T Consensus 134 ~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 134 QAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHhhcchHhhhhhhhcccC
Confidence 9999999 8999999999874
No 138
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=1e-06 Score=88.21 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN 172 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~ 172 (477)
.....+|||-.||..+++++|.++|.+++.|+ .|+|.+|++|.++|+-|.|+|++..+|++||+... +.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999886 47889999999999999999999999999999998 8999
Q ss_pred CeEEEEEEcCCCC
Q 011796 173 GKMVEVKRAVPKE 185 (477)
Q Consensus 173 Gr~l~V~~a~~k~ 185 (477)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987554
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.38 E-value=2.4e-07 Score=93.01 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=118.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~ 79 (477)
....|.|.||.+.+|.|+|..||.-.|+|.++.|+..... ....-.|||.|.|...+..|. |...++-.+.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3458999999999999999999999999999999874332 335668999999999999998 888877778777765
Q ss_pred cCCcchhh--hhc---------c-----------------CCC---CCCCCC---------CCCcccceeecCCCCCCCH
Q 011796 80 AVPRDDQN--MLN---------R-----------------NTS---SIHSSP---------GPGRTKKIFVGGLASTVTE 119 (477)
Q Consensus 80 a~~~~~~~--~~~---------~-----------------~~~---~~~~~~---------~~~~~~~lfV~nLp~~~te 119 (477)
........ ... . +.. .+..++ .+...++|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 43221110 000 0 000 000000 0122357999999999999
Q ss_pred HHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccC
Q 011796 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELN 172 (477)
Q Consensus 120 edL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~ 172 (477)
.++.+.|+.+|+|...++..... .-+|.|+|........|+..++.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999998877754332 22788999998888889888775443
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.35 E-value=1.7e-06 Score=85.97 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=73.2
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN 172 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~ 172 (477)
+...+.|||.+||.++|.+++.++|++||.|. .|++.++.+ +..||=|+|.|--+|+++-||+.++ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34566799999999999999999999999886 378888877 8999999999999999999999999 8999
Q ss_pred CeEEEEEEcC
Q 011796 173 GKMVEVKRAV 182 (477)
Q Consensus 173 Gr~l~V~~a~ 182 (477)
|+.|+|.+|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999887
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=5.6e-07 Score=85.52 Aligned_cols=72 Identities=28% Similarity=0.594 Sum_probs=65.0
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
.+|||++||+.+.+.||+++|..|+.|.+|.+. .+|+||+|++..+|+.|+..++ ++|.+..+.|.+++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999886 3589999999999999999998 8888888888888754
Q ss_pred C
Q 011796 185 E 185 (477)
Q Consensus 185 ~ 185 (477)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=5.9e-07 Score=85.86 Aligned_cols=82 Identities=27% Similarity=0.578 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
++++-+||++.|.-++++|.|-..|++|-.-...++++|+.|++++||+||-|.+++++.+|+ ++...+..|.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 357789999999999999999999999988888999999999999999999999999999999 899999999888866
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+.-+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5443
No 143
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=8e-08 Score=104.65 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=124.7
Q ss_pred CcEEEEcCCCccCcHH-HHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEE-RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee-~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
.+++.+.++-+...+. .+++.|..++.|+.|++......-..--+.++++..+.+++.|+ .....+..+.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3556677777765554 67889999999999999874332222228899999999999999 777778888888877776
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~ 162 (477)
+....... ..+.......++||.||+..+.++||...|..++.|+.|.|..++.+++.||+|+|+|..++++.+
T Consensus 651 ~~~~~~~k------vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 651 EEKEENFK------VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hhhhhccC------cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 65322111 011111244689999999999999999999999999988888778889999999999999999999
Q ss_pred HHHhcCCccCC
Q 011796 163 VLHKTFHELNG 173 (477)
Q Consensus 163 Al~~~~~~l~G 173 (477)
|+...+..+.+
T Consensus 725 aV~f~d~~~~g 735 (881)
T KOG0128|consen 725 AVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhh
Confidence 99988854444
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=6.5e-06 Score=68.93 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=66.7
Q ss_pred cceeecCCCCCCCHHHHHHHhhh--cCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC----CeEEEE
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQ--FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN----GKMVEV 178 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~--~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~----Gr~l~V 178 (477)
++|.|+|||...|.++|.+++.. .+....+-++.|..+....|||||.|.++++|.+-.+..+ +.+. .|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999999965 3666778889998888999999999999999999888777 5443 678899
Q ss_pred EEcCC
Q 011796 179 KRAVP 183 (477)
Q Consensus 179 ~~a~~ 183 (477)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 98863
No 145
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.13 E-value=1.8e-05 Score=74.54 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=67.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc---CCeEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM-YDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGKMV 176 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~-~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l---~Gr~l 176 (477)
+...++|||.+||.++..-||..+|..|---+.+.|. .++..+..+=+|||+|.+.++|++|+++++ ..| .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457899999999999999999999998666665553 344434445699999999999999999998 544 45778
Q ss_pred EEEEcCCCCCC
Q 011796 177 EVKRAVPKEFS 187 (477)
Q Consensus 177 ~V~~a~~k~~~ 187 (477)
+|++|+...+.
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99988865543
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=2e-06 Score=90.28 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=63.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
....+|+|-|||..|++++|+++|+.||+|+.|+.- ...++.+||+|-|..+|++|++.++ .+|.+++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456799999999999999999999999999996654 3446799999999999999999999 899999988
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=1.1e-05 Score=80.81 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--------EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G 72 (477)
.+.-+|||-.||..+++++|.++|.+|+.|. .|.|-+|++|.+.|+-|.|.|.|+..|+.|+ ++...+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4567999999999999999999999999874 3667789999999999999999999999999 88999999
Q ss_pred eEEEEeecCCcch
Q 011796 73 RTVEAKKAVPRDD 85 (477)
Q Consensus 73 r~l~V~~a~~~~~ 85 (477)
.+|+|..+..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999988876654
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2.1e-05 Score=84.59 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=73.0
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH---NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~---~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
...++.|||.||++.++|+.|...|..||+|..|+|+..+ +..+.+-++||-|.+..++++|++.++ ..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3567899999999999999999999999999999998543 445667799999999999999999999 889999999
Q ss_pred EEEcCCC
Q 011796 178 VKRAVPK 184 (477)
Q Consensus 178 V~~a~~k 184 (477)
+-|.++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=3.9e-05 Score=65.38 Aligned_cols=68 Identities=31% Similarity=0.451 Sum_probs=41.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH----Hc---CCccCCeEEEEe
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MD---KHMIDGRTVEAK 78 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~---~~~i~Gr~l~V~ 78 (477)
+.|+|.+++.+++-++|+++|++|++|..|.+.+... .|||.|.++++|++|+ .. ...|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999999999877544 6999999999999998 22 334555555554
Q ss_pred e
Q 011796 79 K 79 (477)
Q Consensus 79 ~ 79 (477)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.83 E-value=3e-05 Score=83.33 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRA---TGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~---tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
-.+.|||.||+..++|+.|...|-.||+|..++||.-+. .-+.+-++||.|.+..+|++|+ ++...|...++++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 468999999999999999999999999999999986433 2356779999999999999999 89999999999999
Q ss_pred ecCCc
Q 011796 79 KAVPR 83 (477)
Q Consensus 79 ~a~~~ 83 (477)
|.++-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 88543
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=3.9e-05 Score=65.38 Aligned_cols=68 Identities=25% Similarity=0.435 Sum_probs=44.3
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C-----ccCCeEEEEEE
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H-----ELNGKMVEVKR 180 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~-----~l~Gr~l~V~~ 180 (477)
.|+|.+++..++.++|+++|++|+.|..|.+.+... .|+|.|.++++|++|++++. . .|.+..+++..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 588999999999999999999999999999987654 79999999999999988765 3 46666666554
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.78 E-value=1.4e-05 Score=81.50 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEec---CCCC--Cc--------ceEEEEEeCCHHHHHHHHHhcC
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD---HNTQ--RP--------RGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d---~~tg--~~--------rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
+.+.++|.+.|||.+-.-+.|.+||..+|.|+.|+|++- +... .+ +=+|||||+..++|++|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357899999999999999999999999999999999876 2221 11 3479999999999999999997
Q ss_pred C
Q 011796 169 H 169 (477)
Q Consensus 169 ~ 169 (477)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 3
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.59 E-value=3.9e-05 Score=76.83 Aligned_cols=80 Identities=24% Similarity=0.508 Sum_probs=72.5
Q ss_pred cEEE-EcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH-cCCccCCeEEEEeecCCc
Q 011796 6 GKLF-IGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM-DKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~Lf-VgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~-~~~~i~Gr~l~V~~a~~~ 83 (477)
.++| |.+|+..+++++|+++|..++.|+.++++.++.++..++|+||+|.+...+.+++. ..+.|.++++.++...++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4455 99999999999999999999999999999999999999999999999999999994 677889999999888776
Q ss_pred ch
Q 011796 84 DD 85 (477)
Q Consensus 84 ~~ 85 (477)
..
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 54
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.00028 Score=56.94 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=45.2
Q ss_pred CcEEEEcCCCccCcHHH----HHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 5 LGKLFIGGISWDTDEER----LKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~----Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
...|+|.|||.+.+... |++|+..|| .|.+|. .+.|+|.|.+++.|++|+ +++..+.|++|.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 35799999999877665 556666785 565542 136999999999999999 9999999999999
Q ss_pred eecCC
Q 011796 78 KKAVP 82 (477)
Q Consensus 78 ~~a~~ 82 (477)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 88744
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.49 E-value=6.1e-05 Score=75.02 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=67.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcC--cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
+.-+|||+||-|++|++||.+.+..-| .+.++++..++.++++||||+|...++.++++.++.+. ++|.|..-+|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345799999999999999999988765 46778889999999999999999999999999999998 799997766643
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.46 E-value=9e-05 Score=73.83 Aligned_cols=76 Identities=16% Similarity=0.410 Sum_probs=65.2
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
-.+||+||-|.+|++||.+.+...| .+.++++..++.++.+||||+|...+++++++.+ +-+++|+|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 3589999999999999999987765 5788889999999999999999999999999888 77888988866665443
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.36 E-value=0.00036 Score=56.34 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=45.8
Q ss_pred cceeecCCCCCCCHHH----HHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 106 KKIFVGGLASTVTESD----FKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 106 ~~lfV~nLp~~~teed----L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
..|+|.|||.+.+... |+++++.|| +|.+|. .+.|+|.|.+++.|++|++.++ .++.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999988764 567777776 555542 2379999999999999999999 89999999999
Q ss_pred EcC
Q 011796 180 RAV 182 (477)
Q Consensus 180 ~a~ 182 (477)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.35 E-value=0.00044 Score=51.43 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=42.6
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
+.|-|.+.|.+..+ +|.++|..||+|+++.+..+. -+.+|+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 57888999988665 455588899999998887333 38999999999999986
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00038 Score=51.74 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=41.7
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al 164 (477)
+.|-|.+.+.+..++ |.++|+.||+|+++.+..... +.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 457788888776654 555888999999998873333 8999999999999986
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.21 E-value=0.0011 Score=55.98 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEe-ecC------CCCCcccEEEEEeCCHHHHHHHH-HcCCccCCe-
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIM-RDR------ATGRARGFGFVVFADPAVAERVI-MDKHMIDGR- 73 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~-~d~------~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr- 73 (477)
.+.+-|.|=+.|+. ....|.++|++||+|++..-+ ++. ........-.|+|.++.+|++|| .|...|.+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 46778999999998 555788899999999887511 100 00123448999999999999999 888889875
Q ss_pred EEEEeecCCc
Q 011796 74 TVEAKKAVPR 83 (477)
Q Consensus 74 ~l~V~~a~~~ 83 (477)
.|-|++.++.
T Consensus 83 mvGV~~~~~~ 92 (100)
T PF05172_consen 83 MVGVKPCDPA 92 (100)
T ss_dssp EEEEEE-HHH
T ss_pred EEEEEEcHHh
Confidence 5557776443
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.17 E-value=0.00087 Score=66.73 Aligned_cols=80 Identities=21% Similarity=0.483 Sum_probs=62.8
Q ss_pred cccceeecCCCCCCCHHHH------HHHhhhcCcEEEEEEEecCCCCCc-ceEE--EEEeCCHHHHHHHHHhcC-CccCC
Q 011796 104 RTKKIFVGGLASTVTESDF------KKYFDQFGTITDVVVMYDHNTQRP-RGFG--FITYDSEEAVDRVLHKTF-HELNG 173 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL------~~~F~~~G~V~~v~i~~d~~tg~~-rG~a--FVeF~s~e~a~~Al~~~~-~~l~G 173 (477)
...-+||-.||+.+..|++ .++|.+||.|+.|.|-+......+ .+.+ ||+|.+.|+|.+||.+.+ ..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4456899999998887763 478999999999988765421111 2233 999999999999999999 89999
Q ss_pred eEEEEEEcCC
Q 011796 174 KMVEVKRAVP 183 (477)
Q Consensus 174 r~l~V~~a~~ 183 (477)
|.|+..+-..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999887554
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0011 Score=69.61 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
+..+||||+.||.-++.++|..+|+ .||.|+.+-|-.|++-+-.||-+=|.|.+..+-.+||
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 4579999999999999999999998 6999999999999777999999999999999988888
No 163
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0011 Score=69.91 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=59.1
Q ss_pred cccceeecCCCCCCCHHHHHHHhh--hcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFD--QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEV 178 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~--~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V 178 (477)
+.+.|.|+.||+++.+|+|+.+|+ .|-++++|.+-.+.. =||+|++++||++|.+.+. ++|.+|+|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 556788999999999999999995 488999999887643 6999999999999998876 5788988854
Q ss_pred EE
Q 011796 179 KR 180 (477)
Q Consensus 179 ~~ 180 (477)
..
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.81 E-value=0.0038 Score=52.66 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=52.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHhcCCccCCe-E
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVV-VMYDH------NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK-M 175 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~-i~~d~------~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr-~ 175 (477)
...-|.|-+.|+. ....|.++|++||+|.+.. +.++. ..........|+|+++.+|++||.++...|.+. +
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3445888899887 6677889999999998775 11100 001123489999999999999999999888875 5
Q ss_pred EEEEEcC
Q 011796 176 VEVKRAV 182 (477)
Q Consensus 176 l~V~~a~ 182 (477)
|-|++.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 6677764
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.0023 Score=61.75 Aligned_cols=94 Identities=18% Similarity=0.350 Sum_probs=77.3
Q ss_pred HcCCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCC
Q 011796 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ 144 (477)
Q Consensus 65 ~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg 144 (477)
++.....++.|.|.++.. +.|+|.||..-++-|.|.+.|+.|++|+..+++.|.. .
T Consensus 14 Ld~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~ 69 (275)
T KOG0115|consen 14 LDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-G 69 (275)
T ss_pred cCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-c
Confidence 777888899999998753 3699999999999999999999999999888887755 6
Q ss_pred CcceEEEEEeCCHHHHHHHHHhcC-----CccCCeEEEEEEcC
Q 011796 145 RPRGFGFITYDSEEAVDRVLHKTF-----HELNGKMVEVKRAV 182 (477)
Q Consensus 145 ~~rG~aFVeF~s~e~a~~Al~~~~-----~~l~Gr~l~V~~a~ 182 (477)
++.+-.+|+|...-.+.+|+..+. ....++++-|....
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 778899999999888888888774 24555666665544
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.78 E-value=0.0011 Score=68.06 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeec---CCCCC----------cccEEEEEeCCHHHHHHHH
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD---RATGR----------ARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d---~~tg~----------srG~aFVeF~~~e~A~kAl 64 (477)
...++|.+-|||.+-.-|.|.++|..||.|+.|+|++- +.+.+ .+-+|||||.+.+.|.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 36799999999999888999999999999999999875 32221 2567999999999999998
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0011 Score=70.11 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=58.5
Q ss_pred CcEEEEcCCCcc------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC-CeEE
Q 011796 5 LGKLFIGGISWD------TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTV 75 (477)
Q Consensus 5 ~~~LfVgnLP~~------~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~l 75 (477)
..-|+|-++|.- .-..-|.++|+++|+|+.+.++.+..++ .+||.|+||++..+|++|+ +|++.|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 457889999853 2233456889999999999999998755 9999999999999999999 7777776 4455
Q ss_pred EEee
Q 011796 76 EAKK 79 (477)
Q Consensus 76 ~V~~ 79 (477)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5543
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.68 E-value=0.033 Score=62.52 Aligned_cols=6 Identities=0% Similarity=0.041 Sum_probs=2.7
Q ss_pred HHHHhc
Q 011796 162 RVLHKT 167 (477)
Q Consensus 162 ~Al~~~ 167 (477)
.|++.+
T Consensus 1103 ~AmEaL 1108 (1282)
T KOG0921|consen 1103 PAMEAL 1108 (1282)
T ss_pred HHHHHH
Confidence 344444
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.59 E-value=0.017 Score=64.68 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 011796 237 ATGRGGISPFGGAGYGV 253 (477)
Q Consensus 237 ~gGrGG~gg~gg~GyG~ 253 (477)
.+.|.|...+.++|||.
T Consensus 1180 SgyRRGgssysgGGYGg 1196 (1282)
T KOG0921|consen 1180 SGYRRGGSSYSGGGYGG 1196 (1282)
T ss_pred cccccCCCCCCCCCcCC
Confidence 33344333443334443
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.44 E-value=0.013 Score=44.99 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=46.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhc---CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQF---GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~---G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
...+|+|+++. +++.+||+++|..| .....|.++-|. .|-|.|.+++.|.+||.++
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 34589999995 58889999999998 235688888775 4999999999999999764
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.0068 Score=60.53 Aligned_cols=78 Identities=23% Similarity=0.524 Sum_probs=59.8
Q ss_pred cEEEEcCCCccCcHHH----H--HHHHhccCCeeEEEEeecCC-CCCcccEE--EEEeCCHHHHHHHH--HcCCccCCeE
Q 011796 6 GKLFIGGISWDTDEER----L--KEYFSRYGEVVEAVIMRDRA-TGRARGFG--FVVFADPAVAERVI--MDKHMIDGRT 74 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~----L--re~F~~~G~V~~v~i~~d~~-tg~srG~a--FVeF~~~e~A~kAl--~~~~~i~Gr~ 74 (477)
.-|||-+||+.+..|+ | .|+|.+||+|..|.|-+... .....+.+ ||.|.+.|+|.+|| .+...++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3478999999876665 2 58999999998887755431 11122334 99999999999999 8899999999
Q ss_pred EEEeecCCc
Q 011796 75 VEAKKAVPR 83 (477)
Q Consensus 75 l~V~~a~~~ 83 (477)
|++.+-..+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999877655
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.37 E-value=0.0023 Score=61.84 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=52.4
Q ss_pred HHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCcch
Q 011796 20 ERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRDD 85 (477)
Q Consensus 20 e~Lre~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~~~ 85 (477)
|+|...|+ +||+|++++|..+.. -.-+|-++|.|..+|+|++|+ +++..|.+++|.++.......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 44555555 899999998877653 456889999999999999999 999999999999887654433
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.26 E-value=0.0029 Score=61.06 Aligned_cols=71 Identities=28% Similarity=0.476 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCC--------CCccc----EEEEEeCCHHHHHHHH--HcCCc
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT--------GRARG----FGFVVFADPAVAERVI--MDKHM 69 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~t--------g~srG----~aFVeF~~~e~A~kAl--~~~~~ 69 (477)
....|||.+||+.+....|+++|+.||+|-.|-|.+...+ +.++. -+.|||.+...|+++. +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988776554 22222 3679999999999877 88888
Q ss_pred cCCeE
Q 011796 70 IDGRT 74 (477)
Q Consensus 70 i~Gr~ 74 (477)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88775
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.20 E-value=0.012 Score=57.82 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=57.9
Q ss_pred cceeecCC--CCCCC---HHHHHHHhhhcCcEEEEEEEecCCCCCcc-eEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 106 KKIFVGGL--ASTVT---ESDFKKYFDQFGTITDVVVMYDHNTQRPR-GFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 106 ~~lfV~nL--p~~~t---eedL~~~F~~~G~V~~v~i~~d~~tg~~r-G~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
+.|.++|. +-.++ |+++++.+++||.|..|.|..++.....+ =-.||+|+..++|.+|+-.++ ..|.||.|..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 34555554 23333 46889999999999999998775432221 247999999999999999999 8999999987
Q ss_pred EEcC
Q 011796 179 KRAV 182 (477)
Q Consensus 179 ~~a~ 182 (477)
.+..
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 7755
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.16 E-value=0.012 Score=57.97 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=51.4
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 18 DEERLKEYFSRYGEVVEAVIMRDRATGRA-RGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 18 tee~Lre~F~~~G~V~~v~i~~d~~tg~s-rG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
-|+++++.+++||.|..|.|..++..... .---||+|...++|.+|+ +|...|.||.|...+-.
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35688999999999999999876543222 123799999999999999 99999999999876543
No 176
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.14 E-value=0.0041 Score=64.73 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=58.6
Q ss_pred ceeecCCCCCC-CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 011796 107 KIFVGGLASTV-TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (477)
Q Consensus 107 ~lfV~nLp~~~-teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k 184 (477)
.|-+.-.|+.. |-++|..+|.+||+|+.|.|-.... .|.|+|.+..+|-+|..-....|++|.|+|.|-++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 45555556555 4579999999999999999876633 699999999999888877778999999999998773
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.12 E-value=0.015 Score=52.04 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=46.3
Q ss_pred HHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 011796 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (477)
Q Consensus 121 dL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k 184 (477)
+|-+.|..||+|.-|+++.+ .-.|+|.+-++|.+|+++...++.++.|+|++..|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67788889999999988865 379999999999999999999999999999997764
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.10 E-value=0.0024 Score=61.73 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=49.6
Q ss_pred HHHHHHhh-hcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 120 SDFKKYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 120 edL~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
|||...|+ +||+|++++|..+.. -.-+|-++|.|..+|+|++|++.++ ..+.+++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 899999997765543 3457889999999999999999999 89999999887753
No 179
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.08 E-value=0.1 Score=51.72 Aligned_cols=164 Identities=9% Similarity=0.129 Sum_probs=100.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHH--------HcCCc
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDR-------ATGRARGFGFVVFADPAVAERVI--------MDKHM 69 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~-------~tg~srG~aFVeF~~~e~A~kAl--------~~~~~ 69 (477)
.|.|.+.||..+++-..+.+.|.+|++|++|.++.+. +.-+..-...+-|-+.+.+.... .=+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999999876 11223457889999888765432 22445
Q ss_pred cCCeEEEEeecCCcchh----hhhccCC-----CCCC-CCCCCCcccceeecCCCCCCCHHHHHHHh---hhcC----cE
Q 011796 70 IDGRTVEAKKAVPRDDQ----NMLNRNT-----SSIH-SSPGPGRTKKIFVGGLASTVTESDFKKYF---DQFG----TI 132 (477)
Q Consensus 70 i~Gr~l~V~~a~~~~~~----~~~~~~~-----~~~~-~~~~~~~~~~lfV~nLp~~~teedL~~~F---~~~G----~V 132 (477)
+.-..|.+....-+-.. +...... ...+ .......++.|.|.--....+++-|.+.+ ..-. .|
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 55666666544321111 0000000 0111 11223567778776543322333333322 1111 46
Q ss_pred EEEEEEecC--CCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 133 TDVVVMYDH--NTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 133 ~~v~i~~d~--~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
+.|.|+... ...-++-||+++|=+...|..+++.+.
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 788877532 334467899999999999988888766
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.06 E-value=0.0065 Score=61.85 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=62.2
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH---NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~---~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
..|.|.||.+.+|.|+|+.+|.-.|+|.++.|+... ......-.|||.|.+.+.+..|.++.+..+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 479999999999999999999999999999987532 2223345899999999999999999996666666666544
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.04 E-value=0.0093 Score=63.16 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH----HcCCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSR--YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~--~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~l~ 76 (477)
...|.|+|+-||+.+-+|+||.||+. |-++.+|.+..+.. =||.|++++||++|. ...++|.+|+|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35788999999999999999999964 88899999887653 699999999999987 556788899887
Q ss_pred Eeec
Q 011796 77 AKKA 80 (477)
Q Consensus 77 V~~a 80 (477)
.+..
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 6543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.97 E-value=0.024 Score=50.83 Aligned_cols=57 Identities=30% Similarity=0.435 Sum_probs=44.5
Q ss_pred HHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCCcch
Q 011796 21 RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPRDD 85 (477)
Q Consensus 21 ~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~~~~ 85 (477)
+|.+.|+.||+|+-+++..+. -.|.|.+-++|.+|+ ++..+|.++.|+|+...|...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 677788899999888777653 689999999999999 999999999999998887654
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.026 Score=60.04 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=58.5
Q ss_pred ccceeecCCCCCCC------HHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc-CCeEE
Q 011796 105 TKKIFVGGLASTVT------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-NGKMV 176 (477)
Q Consensus 105 ~~~lfV~nLp~~~t------eedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l-~Gr~l 176 (477)
...|+|.++|---. ..-|.++|+++|+|+.+.++.+.+++ .+||.|++|.+..+|+.|++.++ +.| ..+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 45788888875322 23466889999999999999998855 89999999999999999999888 544 45566
Q ss_pred EEEE
Q 011796 177 EVKR 180 (477)
Q Consensus 177 ~V~~ 180 (477)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6643
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.89 E-value=0.033 Score=42.70 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=43.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcc---CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRY---GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~---G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
-.+|+|++| .+++.++|+.+|..| .....|.++-|.. |=|.|.+++.|.+||
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHH
Confidence 357999999 458888999999998 2355788888853 899999999999998
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.79 E-value=0.0053 Score=63.88 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~ 78 (477)
|+.|++.|-+.-+|+. -|-++|...|.+||+|++|.|-.... .|.|.|.+..+|-+|. .+...|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 5678889999999988 46678999999999999999876533 5999999999996666 88999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
|..+...
T Consensus 442 whnps~~ 448 (526)
T KOG2135|consen 442 WHNPSPV 448 (526)
T ss_pred EecCCcc
Confidence 9988653
No 186
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.02 E-value=0.031 Score=54.18 Aligned_cols=72 Identities=13% Similarity=0.313 Sum_probs=57.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCC--------CCcc----eEEEEEeCCHHHHHHHHHhcC-Cc
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT--------QRPR----GFGFITYDSEEAVDRVLHKTF-HE 170 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~t--------g~~r----G~aFVeF~s~e~a~~Al~~~~-~~ 170 (477)
.+-.||+.+||+.+.-..|+++|+.||.|-+|.+.....+ +..+ --+.|||.+...|+++.+.+| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988765443 1111 146799999999999888877 67
Q ss_pred cCCeE
Q 011796 171 LNGKM 175 (477)
Q Consensus 171 l~Gr~ 175 (477)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77654
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.91 E-value=0.025 Score=60.50 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhh-hcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C---ccCCeE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H---ELNGKM 175 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~---~l~Gr~ 175 (477)
....++.|+|.||-.-+|.-+|++++. .++.|++.+| |+. |-.|||.|.+.++|.+.++.|+ . .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678999999999999999999998 5777777733 322 3479999999999999998887 3 457788
Q ss_pred EEEEEcCCC
Q 011796 176 VEVKRAVPK 184 (477)
Q Consensus 176 l~V~~a~~k 184 (477)
|.|.|+...
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887643
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.90 E-value=0.019 Score=47.18 Aligned_cols=69 Identities=17% Similarity=0.358 Sum_probs=44.7
Q ss_pred EEEEeCCHHHHHHHH-HcCC--ccCCeEEEEeec--CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHH
Q 011796 50 GFVVFADPAVAERVI-MDKH--MIDGRTVEAKKA--VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKK 124 (477)
Q Consensus 50 aFVeF~~~e~A~kAl-~~~~--~i~Gr~l~V~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~ 124 (477)
|.|.|.+++.|++.+ +..+ .++.+.+.|+.. ......... -......++|.|.+||....||+|++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q---------v~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ---------VFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE---------EEEcccCCEEEEeCCCCCCChhhhee
Confidence 689999999999999 4344 455665555433 211111100 00113567899999999999999988
Q ss_pred Hhh
Q 011796 125 YFD 127 (477)
Q Consensus 125 ~F~ 127 (477)
.++
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 654
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.90 E-value=0.017 Score=59.34 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=60.0
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CccCCeEEEEEEcCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVKRAVP 183 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~--~~l~Gr~l~V~~a~~ 183 (477)
.+||++||.+.++.+||+.+|...-.-..-.++. ..+|+||.+.+..-+.+|++.++ .++.|++++|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997641101111111 24699999999999999999998 589999999999988
Q ss_pred CCCC
Q 011796 184 KEFS 187 (477)
Q Consensus 184 k~~~ 187 (477)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7653
No 190
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.085 Score=56.46 Aligned_cols=126 Identities=16% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCcc-CcHHHHHHHHhcc----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEE
Q 011796 2 ESDLGKLFIGGISWD-TDEERLKEYFSRY----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVE 76 (477)
Q Consensus 2 e~d~~~LfVgnLP~~-~tee~Lre~F~~~----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~ 76 (477)
+..+++|-|-||.|+ +..++|.-+|+.| |.|.+|.|.+... |+ .. |...++.|-++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-Gk-----------eR------M~eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GK-----------ER------MKEEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hH-----------HH------hhhhcccCChhh
Confidence 467899999999999 8999999999877 5799999877532 21 11 333344444333
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC
Q 011796 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s 156 (477)
+.......... . ..+..-++-.++-+.+| .|.+++.. ||.|+|++
T Consensus 233 l~~~~e~~~~s------------------~------sD~ee~~~~~~~kLR~Y-q~~rLkYY----------yAVvecDs 277 (650)
T KOG2318|consen 233 LFKPVEEYKES------------------E------SDDEEEEDVDREKLRQY-QLNRLKYY----------YAVVECDS 277 (650)
T ss_pred hccccccCccc------------------c------cchhhhhhHHHHHHHHH-HhhhheeE----------EEEEEecC
Confidence 32211111000 0 01111111123333344 23444444 99999999
Q ss_pred HHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 157 EEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 157 ~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
.+.|.++.+.++ .++......+.+
T Consensus 278 i~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 278 IETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred chHHHHHHHhcCcceeccccceeee
Confidence 999999999999 777665544443
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.81 E-value=0.088 Score=42.69 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=41.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
+....+|. +|..+...||.++|+.||.|. |..+.|. .|||...+.+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44455565 999999999999999999864 5566553 69999999999998887765
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.81 E-value=0.016 Score=62.70 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
+.-+|||++|...+.++-++.++..||-|.+++... |+|++|..+..+.+|+ ++...+++.++.++...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 456899999999999999999999999988777654 9999999999988888 77888888888776541
Q ss_pred Ccchhhhhc--cCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhc
Q 011796 82 PRDDQNMLN--RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (477)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~ 129 (477)
......... ......+........+.++|.++|....+...+..|.--
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 111100000 000011111112224567788888777777666666443
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.66 E-value=0.066 Score=43.38 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=38.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
.+-.+|. .|.++...||.++|++||.| .|..+.|. -|||...+.+.|+.|+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVM 59 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHH
Confidence 3444455 99999999999999999988 46776663 5999999999999888
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.51 E-value=0.033 Score=53.99 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=60.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcC----CccCCeEEEEee
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK----HMIDGRTVEAKK 79 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~----~~i~Gr~l~V~~ 79 (477)
..|+|.||+.-++.|.|++.|+.|++|...+++.|-. ++..+-.+|+|...-.|.+|+ ... -.+.++++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6899999999999999999999999999988887754 788889999999999988888 211 233456666654
Q ss_pred c
Q 011796 80 A 80 (477)
Q Consensus 80 a 80 (477)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.27 E-value=0.21 Score=44.57 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCccC-cHHH---HHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEE
Q 011796 2 ESDLGKLFIGGISWDT-DEER---LKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVE 76 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~-tee~---Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~ 76 (477)
|....+|.|+=|...+ ..|| |...++.||+|.+|.++-.. -|.|.|+|..+|-+|+ .-.....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 4456788888776663 2233 45566789999999886433 5999999999999999 444577788888
Q ss_pred EeecC
Q 011796 77 AKKAV 81 (477)
Q Consensus 77 V~~a~ 81 (477)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88754
No 196
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.10 E-value=0.017 Score=64.39 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 99 ~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
......+++||++||+..+++.+|+..|..+|.|++|.|-.-+....+ -|+||.|.+.+.+-+|+..+. ..|..-.+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-chhhhhhhccccCcccchhhcCCccccCccc
Confidence 334567889999999999999999999999999999988765432332 389999999888888876665 444444444
Q ss_pred EEEc
Q 011796 178 VKRA 181 (477)
Q Consensus 178 V~~a 181 (477)
+.+-
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 4444
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.67 E-value=0.27 Score=43.89 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred CCcccceeecCCCCCCC-HHHHHH---HhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEE
Q 011796 102 PGRTKKIFVGGLASTVT-ESDFKK---YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~t-eedL~~---~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~ 177 (477)
+....+|.|+=|..++. .+||+. .++.||+|+.|.+.-. . .|.|.|++..+|-+|+.++.....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----q--savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----Q--SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----c--eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 34566788887766653 345554 4577999999988622 2 69999999999999999999888999998
Q ss_pred EEEcC
Q 011796 178 VKRAV 182 (477)
Q Consensus 178 V~~a~ 182 (477)
+.+-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88753
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.60 E-value=0.052 Score=50.60 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc-cCCe---eEEEEeec-CCCC-CcccEEEEEeCCHHHHHHHH--HcCCcc
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSR-YGEV---VEAVIMRD-RATG-RARGFGFVVFADPAVAERVI--MDKHMI 70 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~-~G~V---~~v~i~~d-~~tg-~srG~aFVeF~~~e~A~kAl--~~~~~i 70 (477)
.+..+|.|+.||+.+||+++.+.+.. +.+. ..+.-... .... ..-.-|||.|.+.+++...+ .+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 56789999999999999999997766 5554 23331111 1111 12234999999999988777 555444
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.98 E-value=1.6 Score=37.57 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Cc---cCCeEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HE---LNGKMVEV 178 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~---l~Gr~l~V 178 (477)
.+..+.+-..|..++.++|..+.+.+- .|+.++|++|.. ..+-.++|+|++.++|++-.+..| +. |+-..++|
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv 89 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV 89 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence 445566666677778888887777654 567889998854 356689999999999999988877 53 44455555
Q ss_pred EEc
Q 011796 179 KRA 181 (477)
Q Consensus 179 ~~a 181 (477)
-+.
T Consensus 90 vfV 92 (110)
T PF07576_consen 90 VFV 92 (110)
T ss_pred EEE
Confidence 443
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=0.45 Score=47.35 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=55.7
Q ss_pred eeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCe-EEEEEEcCCCCC
Q 011796 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK-MVEVKRAVPKEF 186 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr-~l~V~~a~~k~~ 186 (477)
|-|-++|.. .-.-|.++|++||+|++.+....- -+-.|.|.+.-+|+|||.+..+.|++. .|-|+.+.+|..
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 445566653 345678899999999887776322 289999999999999999999888775 467887776665
Q ss_pred CC
Q 011796 187 SP 188 (477)
Q Consensus 187 ~~ 188 (477)
..
T Consensus 273 i~ 274 (350)
T KOG4285|consen 273 IN 274 (350)
T ss_pred hc
Confidence 44
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=0.42 Score=47.58 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=56.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCe-EEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGR-TVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr-~l~V~~a~~ 82 (477)
+.=|-|-++|.... .-|..+|++||+|++.+...+. -+-+|.|.+.-+|+||| ++.+.|++. .|-|+....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 34566777776643 3577899999999877665332 38999999999999999 899999875 456777666
Q ss_pred cchhhh
Q 011796 83 RDDQNM 88 (477)
Q Consensus 83 ~~~~~~ 88 (477)
+...+.
T Consensus 270 ksvi~~ 275 (350)
T KOG4285|consen 270 KSVING 275 (350)
T ss_pred HHHhcc
Confidence 654443
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.31 E-value=0.054 Score=54.51 Aligned_cols=83 Identities=23% Similarity=0.379 Sum_probs=63.2
Q ss_pred CcccceeecCCCCCCCHHHHH---HHhhhcCcEEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 011796 103 GRTKKIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~---~~F~~~G~V~~v~i~~d~~tg---~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~ 175 (477)
.....+||-.|+..+.++++- +.|.+||.|..|.+.++.... -.---++|+|+.+|+|..||+..+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 344568888998887666554 477889999999998876311 112348999999999999999988 7889998
Q ss_pred EEEEEcCCCC
Q 011796 176 VEVKRAVPKE 185 (477)
Q Consensus 176 l~V~~a~~k~ 185 (477)
|+..+..++-
T Consensus 155 lka~~gttky 164 (327)
T KOG2068|consen 155 LKASLGTTKY 164 (327)
T ss_pred hHHhhCCCcc
Confidence 8887776654
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.23 E-value=0.092 Score=48.98 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=46.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhh-cCcE---EEEEEEecC-CC-CCcceEEEEEeCCHHHHHHHHHhcC-Ccc-C---
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQ-FGTI---TDVVVMYDH-NT-QRPRGFGFITYDSEEAVDRVLHKTF-HEL-N--- 172 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~-~G~V---~~v~i~~d~-~t-g~~rG~aFVeF~s~e~a~~Al~~~~-~~l-~--- 172 (477)
...+|.|++||+.+||+++.+.+.. +... ..+.-.... .. ...-.-|+|.|.+.+++..-++..+ +.+ +
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999997776 5554 233311221 11 1123469999999999998888876 332 1
Q ss_pred -CeEEEEEEcC
Q 011796 173 -GKMVEVKRAV 182 (477)
Q Consensus 173 -Gr~l~V~~a~ 182 (477)
-.+..|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 1345666664
No 204
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.17 E-value=0.11 Score=55.67 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc---CCeEEEE
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI---DGRTVEA 77 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i---~Gr~l~V 77 (477)
-++.|+|.||=.-+|.-+|++|+. .++.|+++ +|.. -|-.|||.|.+.++|.+.. |++..+ ..+.|.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 468899999999999999999998 57777777 5432 2347999999999998877 777655 4677888
Q ss_pred eecCCc
Q 011796 78 KKAVPR 83 (477)
Q Consensus 78 ~~a~~~ 83 (477)
.+....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 776443
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.34 E-value=1.9 Score=37.04 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=44.7
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI 70 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i 70 (477)
..+.+--.|+.++.++|..+.+.+ -.|..++|++|.. .++=.+.++|.+.++|++.. .|++.+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344444455556667777777766 4577888988754 35667999999999999988 565554
No 206
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=90.25 E-value=0.11 Score=47.89 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=43.8
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V 178 (477)
.++++.. +.+...++|.++.+ +.+..|.+-+..+. ...+|-.||+|.+.+.+.++++.......-..|..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r 181 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKR 181 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHH
Confidence 3455554 33333344444444 67888877654432 25789999999999999998877654444444433
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.77 E-value=0.34 Score=43.34 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=72.4
Q ss_pred cCcHHHHHHHHhc-cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCCcchhhhhccCC
Q 011796 16 DTDEERLKEYFSR-YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNT 93 (477)
Q Consensus 16 ~~tee~Lre~F~~-~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~ 93 (477)
+.+-+.|.+.+.+ ......+.+..- ..++..++|.+++++++++ .....+++..|.++.-.+........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~--- 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK--- 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc---
Confidence 3556666666654 233333444332 1248999999999999999 66667788888887776543321100
Q ss_pred CCCCCCCCCCcccceeecCCCCC-CCHHHHHHHhhhcCcEEEEEEEec
Q 011796 94 SSIHSSPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYD 140 (477)
Q Consensus 94 ~~~~~~~~~~~~~~lfV~nLp~~-~teedL~~~F~~~G~V~~v~i~~d 140 (477)
.....-=|.|.+||.. .+++-|+++.+.+|++.++.....
T Consensus 100 -------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 100 -------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred -------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 0012223677899987 688889999999999998877644
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.44 E-value=1 Score=47.17 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~ 71 (477)
..+.|+|--+|-.+|-.||..|...+ -.|.+++|++|... ++=...|+|.+.++|.... .|+..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999999765 56999999997653 3335999999999999988 6666554
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.31 E-value=0.84 Score=42.88 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=43.9
Q ss_pred CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEEEEcCCC
Q 011796 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVKRAVPK 184 (477)
Q Consensus 118 teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V~~a~~k 184 (477)
..+.|+++|..+..+..+.+++.-. -..|.|.+.++|.+|...++ ..+.+..|+|.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999988888875422 58999999999999999987 4799999999988543
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.29 E-value=0.28 Score=54.73 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=65.1
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C--ccCCeEEEEEEcCC
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H--ELNGKMVEVKRAVP 183 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~--~l~Gr~l~V~~a~~ 183 (477)
+..+.|++-..+-.-|..+|.+||.|.+++.++|.+ .|.|+|.+.|.|..|++.+. + .+.|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345666667778888999999999999999998876 79999999999999999887 4 46788899999998
Q ss_pred CCCCCCC
Q 011796 184 KEFSPGP 190 (477)
Q Consensus 184 k~~~~~~ 190 (477)
-+....+
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 7765433
No 211
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=1.5 Score=45.35 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=52.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcE-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l 176 (477)
-.+.|-|.++|.....+||...|+.|+.- -+|+++.|. .||-.|.+...|..||..-+..|.=|+|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 34678899999999999999999998643 467777664 5999999999999999775545544544
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.06 E-value=1.8 Score=33.70 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=38.3
Q ss_pred cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 16 DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 16 ~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
.++-++|+..|+.|. -.+|+.|+. | =||.|.+.++|+++. .+...+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~t-G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRT-G-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCC-E-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478889999999985 234555543 3 489999999999999 5556655555543
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.38 E-value=0.23 Score=50.06 Aligned_cols=80 Identities=24% Similarity=0.471 Sum_probs=59.6
Q ss_pred cEEEEcCCCccCcHHH-HH--HHHhccCCeeEEEEeecCCC-CC--cccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 6 GKLFIGGISWDTDEER-LK--EYFSRYGEVVEAVIMRDRAT-GR--ARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~-Lr--e~F~~~G~V~~v~i~~d~~t-g~--srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
+.+||-.||.+...++ |+ ++|.+||.|..|.+.+++.. .. .---++|.|..+|+|..|| .+...++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888998854444 43 58889999999988876621 11 1123899999999999999 7888889999888
Q ss_pred eecCCcch
Q 011796 78 KKAVPRDD 85 (477)
Q Consensus 78 ~~a~~~~~ 85 (477)
.+..++-.
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 77766643
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.98 E-value=1.4 Score=41.43 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=42.7
Q ss_pred CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEEeecCCc
Q 011796 17 TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 17 ~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V~~a~~~ 83 (477)
-..+.|+++|..+.++.++.+++.- .=..|.|.+.++|++|. ++ ...+.+..|+|.++.+.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3557899999999999888887642 24889999999999998 56 67899999999888544
No 215
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=86.90 E-value=0.1 Score=58.18 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCcc-CcHHHHHHHHhccC--CeeEEEEe
Q 011796 3 SDLGKLFIGGISWD-TDEERLKEYFSRYG--EVVEAVIM 38 (477)
Q Consensus 3 ~d~~~LfVgnLP~~-~tee~Lre~F~~~G--~V~~v~i~ 38 (477)
..+|+|+|..||.+ .++++|+++|.+.. +|...+|+
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~ 244 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLC 244 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhh
Confidence 46899999999998 67888999998753 34433343
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.40 E-value=2.4 Score=33.43 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHhhhcC-----cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 115 STVTESDFKKYFDQFG-----TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 115 ~~~teedL~~~F~~~G-----~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
..++..+|..++.... .|-+|+|..+ |+||+-... .++++++.++ ..+++++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888887654 4556777644 899987654 6777887777 8999999999876
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.23 E-value=3.9 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=39.6
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcE-EEEEEEecCCCCCcceEEEEEeCC-------HHHHHHHHHh
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDS-------EEAVDRVLHK 166 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFVeF~s-------~e~a~~Al~~ 166 (477)
.-|+|.||+.++.-.||+..+.+-+-+ .++.+. -+++-||++|-+ .+++++++..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s 393 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKS 393 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhcc
Confidence 459999999999999999999876543 233332 345679999955 4566666644
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.65 E-value=0.56 Score=51.24 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=60.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.+..++||+|+...+.++-++.+...||.|..+++++ |+|.+|.......+|+..+. ..+++..+.++..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3566899999999999999999999999998887763 89999999999999988888 7888888877663
No 219
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.49 E-value=1.6 Score=34.15 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCCc
Q 011796 20 ERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 20 e~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~~ 83 (477)
++|++.|+..| +|.++.-|..+.+....-.-||+++...+..+ +++-..|.+..|+|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~-i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE-IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc-eeehHhhCCeEEEEecCCCC
Confidence 57888888877 78888888888777777888999877766333 35667788889999887654
No 220
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=84.29 E-value=1.3 Score=34.56 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCCcc
Q 011796 20 ERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRD 84 (477)
Q Consensus 20 e~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~~~ 84 (477)
++|++.|+++| +|..|.-|..+.+....-.=||+.+...+... +++-+.|.+++|.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcccC
Confidence 46888898888 78899988888777777788888876655444 466678889999998876543
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.93 E-value=7.2 Score=30.70 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=31.8
Q ss_pred CcHHHHHHHHhccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 17 TDEERLKEYFSRYG-----EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 17 ~tee~Lre~F~~~G-----~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
++..+|..++.... +|-.|+|..+ |+||+-... .|++++ +++..+.+++|.|+.|
T Consensus 13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 78889999997764 3566777654 789987655 556666 8899999999999875
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.67 E-value=4.9 Score=42.34 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=54.9
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhc-CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~-G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l 171 (477)
...|+|-.+|..+|-.||-.|...+ -.|.+|+|++|... .+=.++|+|.+.++|+.-.+.++ +.|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 6789999999999999999999764 56889999997653 34579999999999999998887 544
No 223
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.35 E-value=7.6 Score=30.21 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 116 ~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
.++-+||+..+.+|.. .+|..|+. | =||.|.+.++|++|....+ ..+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5788999999999953 44555543 3 4999999999999998887 555544443
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.28 E-value=2.9 Score=43.21 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=46.1
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKH 68 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~ 68 (477)
.+.|-|-++|.....+||...|+.|.. --+|++|.|. .||-.|.+...|..||.-+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 467889999999888899999999853 4566677664 59999999999999992244
No 225
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=76.96 E-value=5 Score=34.56 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcC--CccCCeEEEEeecCCcchhhhhc
Q 011796 13 ISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK--HMIDGRTVEAKKAVPRDDQNMLN 90 (477)
Q Consensus 13 LP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~--~~i~Gr~l~V~~a~~~~~~~~~~ 90 (477)
||+-+++ |.++|+.-|+|.+|..+.. +.|. +|.-- +++ ..++++ |.|-..........
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItvtq-------------ypdn-dal~~-~~G~lE~vDg~-i~IGs~q~~~sV~i-- 70 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITVTQ-------------YPDN-DALLY-VHGTLEQVDGN-IRIGSGQTPASVRI-- 70 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEEec-------------cCCc-hhhhe-eeeehhhccCc-EEEccCCCcccEEE--
Confidence 6666554 9999999999998876643 2211 11111 221 234555 55443321111000
Q ss_pred cCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhh---cCcEEEEEEEecCCCCCcceEEEEEeCCH
Q 011796 91 RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQ---FGTITDVVVMYDHNTQRPRGFGFITYDSE 157 (477)
Q Consensus 91 ~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~---~G~V~~v~i~~d~~tg~~rG~aFVeF~s~ 157 (477)
...+.....+| -|+.+|..+|+++|++ |--|++-.|.+|--..-+--.||..|...
T Consensus 71 --------~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 --------QGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred --------ecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 00011122333 4789999999999975 55555555555522122223788888654
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.00 E-value=4.3 Score=35.19 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred EEEEcCCCccC---------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHH
Q 011796 7 KLFIGGISWDT---------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~~---------tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~-~e~A~kAl 64 (477)
++.|-|+|.+. +.++|++.|+.|.+++ ++.+.++. -.+++++|+|.. ..--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 46777886643 5678999999998875 66666553 578999999955 44455555
No 227
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=75.90 E-value=8.7 Score=39.97 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhcc----CCeeEEEEeec
Q 011796 4 DLGKLFIGGISWD-TDEERLKEYFSRY----GEVVEAVIMRD 40 (477)
Q Consensus 4 d~~~LfVgnLP~~-~tee~Lre~F~~~----G~V~~v~i~~d 40 (477)
...+|-|-||.|+ +..++|...|+.| |+|..|.|.+.
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 5678999999998 8888999999876 67888888764
No 228
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.62 E-value=7 Score=30.54 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=45.2
Q ss_pred HHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 120 SDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 120 edL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
++|++.|+..| +|..|.-+..+.+..+--.-||+++...+.++++ + +.|.+..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 57888888776 6778888888777777778899988766533333 3 6788888888776543
No 229
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=72.78 E-value=2.4 Score=47.70 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=57.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc--CCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI--DGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i--~Gr~l~V~~a 80 (477)
+.+..+-|.+-..+-.-|..+|.+||.|.++..+++-. .|.|+|...|.|..|+ ++++++ -+-+.+|..+
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34556677777888889999999999999999888765 7999999999999998 655544 3666777666
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
++.
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 554
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=71.39 E-value=10 Score=37.96 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=61.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCC-------CCCcceEEEEEeCCHHHHHH----HHHh---cC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN-------TQRPRGFGFITYDSEEAVDR----VLHK---TF 168 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~-------tg~~rG~aFVeF~s~e~a~~----Al~~---~~ 168 (477)
-.++.|...||..+++-.++...|-+|++|+.|.++.+.. ..+..-...+.|-+.+.+.. .++. ..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999997761 12234578999988776543 3333 33
Q ss_pred CccCCeEEEEEEcC
Q 011796 169 HELNGKMVEVKRAV 182 (477)
Q Consensus 169 ~~l~Gr~l~V~~a~ 182 (477)
+.|+-..|+|++..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 57888899888876
No 231
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=71.32 E-value=50 Score=37.07 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHhhhcCcE-----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 114 ASTVTESDFKKYFDQFGTI-----TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 114 p~~~teedL~~~F~~~G~V-----~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
...++..+|..++..-+.| -.|+|..+ |.||+.. .+.+++.++.+. ..+.+++|.|+.+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 3456777777766554434 34566533 7899875 445777777776 7899999999988633
No 232
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=71.14 E-value=7.7 Score=30.38 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 120 SDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 120 edL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
++|++.|+++| +|..|.-+..+++..+--.-||+.....+... -++ +.|.+++|+|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 57888888887 67888888888877887888999876654444 334 68899998888754
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.46 E-value=4.7 Score=34.94 Aligned_cols=46 Identities=11% Similarity=0.372 Sum_probs=27.9
Q ss_pred CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHh
Q 011796 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLHK 166 (477)
Q Consensus 118 teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s-~e~a~~Al~~ 166 (477)
+.++|++.|..|.+++ |+.+.++. -.+++++|+|.. ..-.+.|+..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 4578999999998764 66666654 568999999964 4444545443
No 234
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.99 E-value=9.2 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHcCCccCCeEEEEeecCCcch
Q 011796 50 GFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDD 85 (477)
Q Consensus 50 aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~~~~ 85 (477)
|||.|++.++|+.|+..-+..+.++++++.|.+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCccc
Confidence 799999999999999433333445566666654433
No 235
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=60.21 E-value=95 Score=31.97 Aligned_cols=6 Identities=0% Similarity=0.368 Sum_probs=2.4
Q ss_pred HHHHHh
Q 011796 121 DFKKYF 126 (477)
Q Consensus 121 dL~~~F 126 (477)
+|..+|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 333444
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.70 E-value=8.4 Score=35.82 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=41.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHH-HcCCccCCeEE
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATG--RARGFGFVVFADPAVAERVI-MDKHMIDGRTV 75 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg--~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l 75 (477)
++++.+ |.+..-++|.++-+ +++..|.+.+... + ..+|--||.|.+.+.|.+++ .+.....-..|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 455555 33334444555544 7888887765433 3 57899999999999999987 44443333333
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.46 E-value=26 Score=34.74 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=28.6
Q ss_pred CcccceeecCCCCC------------CCHHHHHHHhhhcCcEEEEEEEe
Q 011796 103 GRTKKIFVGGLAST------------VTESDFKKYFDQFGTITDVVVMY 139 (477)
Q Consensus 103 ~~~~~lfV~nLp~~------------~teedL~~~F~~~G~V~~v~i~~ 139 (477)
....+|++..||-. .+|+.|+..|+.||.|..|.|+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34567888888732 46788999999999999888763
No 238
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=57.55 E-value=18 Score=38.35 Aligned_cols=141 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeC--CHHHHHHHH--HcC--CccCCeEEEEeecCCcchhhhh
Q 011796 16 DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPAVAERVI--MDK--HMIDGRTVEAKKAVPRDDQNML 89 (477)
Q Consensus 16 ~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~--~~e~A~kAl--~~~--~~i~Gr~l~V~~a~~~~~~~~~ 89 (477)
++.+.+|+++|+.+.....+.|+.++. -.+..-+.|. +.++|-.++ ..+ ..+++..|.|....+...+...
T Consensus 7 ~~~~~~l~dvL~~la~~~g~NiVi~~~---V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~~~~~~~~~ 83 (418)
T TIGR02515 7 NFQDIPVRTVLQVIAEFTNLNIVVSDS---VQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLDELAAQEKD 83 (418)
T ss_pred EEeCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHHHHHHHHHH
Confidence 455666777777766666677666543 1234445554 455666666 223 2346777888765432211100
Q ss_pred ccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhc-----CcE-EEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 011796 90 NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF-----GTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~-----G~V-~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~A 163 (477)
............+..++.+.+. .++.+++.++.+.+ +.+ ..-+|..|+.+. .+|...+++..+++
T Consensus 84 ~~~~~~~~~~~~~l~t~~f~l~----y~~a~~v~~~l~~~~~~~~~~l~~~~~v~~d~~~n-----~lvv~~~~~~~~~i 154 (418)
T TIGR02515 84 ELEAKKQIENLEPLQTELIQLN----YAKASDIAKVLTGDDGGKGSLLSPRGSVTVDPRTN-----TLIVTDIPENLARI 154 (418)
T ss_pred HHHHHhhhhhccCcEEEEEEEe----CCcHHHHHHHHhhcccccccccCCCeeEEEECCcC-----eEEEEeCHHHHHHH
Confidence 0000000001111122222332 34667777777653 111 123455555443 56767776655544
Q ss_pred ---HHhcC
Q 011796 164 ---LHKTF 168 (477)
Q Consensus 164 ---l~~~~ 168 (477)
|++++
T Consensus 155 ~~~i~~lD 162 (418)
T TIGR02515 155 RKLIAELD 162 (418)
T ss_pred HHHHHHhC
Confidence 44554
No 239
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=56.30 E-value=5.9 Score=41.13 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=50.5
Q ss_pred ccceeecCCCCCCCHH--------HHHHHhhh--cCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 011796 105 TKKIFVGGLASTVTES--------DFKKYFDQ--FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165 (477)
Q Consensus 105 ~~~lfV~nLp~~~tee--------dL~~~F~~--~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~ 165 (477)
.+.+|+.++....+.+ +++..|.. ++++..|...+|.....++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777665544 99999988 7788888888888678889999999999999999984
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.20 E-value=35 Score=27.83 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=40.6
Q ss_pred eeecCCCCCCCHHHHHHHhhh-cC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 108 IFVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
-++-.++..++..+|++.+++ |+ .|++|..+.-+.. .--|||++...++|.....++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 344456778999999999987 55 5677776655432 226999999888887776544
No 241
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=55.60 E-value=1e+02 Score=24.48 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=41.2
Q ss_pred eeecCCCCCCCHHHHHHHhhh-------cCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 108 IFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~-------~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
|-..+||..+|.++|.+...+ +-.|.-++-..+++.+ |-||+.+=.++|+++++-++..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHcC
Confidence 445678888999998877654 3345555555554322 5588888889999999887764
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=53.57 E-value=45 Score=26.75 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=39.9
Q ss_pred eeecCCCCCCCHHHHHHHhhh-cC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 108 IFVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
-|+-.++..++..||++.+++ |+ .|.+|..+.-+..- --|||++..-+.|..+-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHhh
Confidence 455567889999999999987 55 56677665544321 26999998877777665443
No 243
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.38 E-value=17 Score=29.93 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=25.4
Q ss_pred EEEEeCCHHHHHHHHHhcC--CccCCeEEEEEE
Q 011796 150 GFITYDSEEAVDRVLHKTF--HELNGKMVEVKR 180 (477)
Q Consensus 150 aFVeF~s~e~a~~Al~~~~--~~l~Gr~l~V~~ 180 (477)
|+|+|++++-|++.+++-. ..++...++|+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999998776 367777777654
No 244
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.91 E-value=6.8 Score=40.71 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=51.0
Q ss_pred CcEEEEcCCCccCcHH--------HHHHHHhc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 5 LGKLFIGGISWDTDEE--------RLKEYFSR--YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee--------~Lre~F~~--~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
.+.+|+..+..+.+.+ +|...|.+ +.++..+...++.....++|.-||+|+..+.+++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4667777777765554 89999998 688888999988877889999999999999999998
No 245
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=49.79 E-value=12 Score=36.22 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEE
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAV 36 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~ 36 (477)
|..+.+.||+-|||..+||+.|+++...++-|..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 345678999999999999999999999998654443
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.16 E-value=20 Score=36.28 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=27.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCCCCC
Q 011796 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 150 aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k~~~ 187 (477)
|||+|+++++|+.|++...+. +.+.++|+.|-++++-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeCCCcccc
Confidence 799999999999999866532 2356688887655543
No 247
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=47.13 E-value=85 Score=23.06 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC----HHHHHHHHHhcC
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----EEAVDRVLHKTF 168 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s----~e~a~~Al~~~~ 168 (477)
+|.|.++.=.--...|++.+.+.-.|.++.+-.... .+-|+|+. .+++.++|++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~------~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK------TVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC------EEEEEEecCCCCHHHHHHHHHHhC
Confidence 356666655556678999999998899888865433 68899974 377888887754
No 248
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=46.70 E-value=15 Score=34.19 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=48.4
Q ss_pred ceeecCCCCCCCH-----HHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCe-EEEEE
Q 011796 107 KIFVGGLASTVTE-----SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVEVK 179 (477)
Q Consensus 107 ~lfV~nLp~~~te-----edL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr-~l~V~ 179 (477)
.+.+..++..+-. .+.+.+|.+|-+.+...+++. ..+..|.|.+++.|..|..++. ..|+++ .|+.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 4555555554422 345556666655554444432 3467899999999999998888 788888 78877
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 776543
No 249
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=46.54 E-value=62 Score=30.32 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=13.1
Q ss_pred CHHHHHHHhhhcCcEEEEEEEec
Q 011796 118 TESDFKKYFDQFGTITDVVVMYD 140 (477)
Q Consensus 118 teedL~~~F~~~G~V~~v~i~~d 140 (477)
+.++|-++=|-|++|.++.+...
T Consensus 87 nk~qIGKVDEIfG~i~d~~fsIK 109 (215)
T KOG3262|consen 87 NKEQIGKVDEIFGPINDVHFSIK 109 (215)
T ss_pred chhhhcchhhhcccccccEEEEe
Confidence 34555555556677776655433
No 250
>PF14893 PNMA: PNMA
Probab=46.27 E-value=17 Score=37.28 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc-cCCeeEEEEe---ecCCCCCcccEEEEEeCCH
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSR-YGEVVEAVIM---RDRATGRARGFGFVVFADP 57 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~-~G~V~~v~i~---~d~~tg~srG~aFVeF~~~ 57 (477)
+..+-|.|.+||.+|+|++|.+.+.. .-++-..+|. ..++. ..--++|||.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccc
Confidence 34678999999999999999998864 3233233332 11211 123689998754
No 251
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=45.96 E-value=2e+02 Score=28.70 Aligned_cols=141 Identities=10% Similarity=0.054 Sum_probs=59.5
Q ss_pred cCcHHHHHHHHhccCCeeEEE-------EeecCCCCCcccEEEEEeCCHHHHHHHH----HcCCccCCeEEEEeecCCcc
Q 011796 16 DTDEERLKEYFSRYGEVVEAV-------IMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEAKKAVPRD 84 (477)
Q Consensus 16 ~~tee~Lre~F~~~G~V~~v~-------i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~l~V~~a~~~~ 84 (477)
..++++|.+.+... +|-.|. ++..++.+ .+ -....|-+.++|++++ ....++ ...++|....-..
T Consensus 62 AL~~~~V~~kL~~V-PVF~itn~~G~p~l~~~~~~~-~~-~v~~~F~s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~ 137 (274)
T PF04278_consen 62 ALPEEEVEEKLAGV-PVFTITNSQGEPVLVSGPDQG-GK-SVGLFFFSQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGK 137 (274)
T ss_dssp ---HHHHHHHHTTS-EEEEEE-TT--B-----TTS---S-EEEEEES-HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHH
T ss_pred cCCHHHHHHHhcCc-eEEEEECCCCCEEEeccCCCC-Cc-eEEEEEecHHHHHHHHHHHhhhCccc-cCceEEEEecHHH
Confidence 46789999988754 221111 22222211 23 2335577999999988 222222 2233333222111
Q ss_pred hhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcE------EEEEEEec----CCCCCcceEEEEEe
Q 011796 85 DQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTI------TDVVVMYD----HNTQRPRGFGFITY 154 (477)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V------~~v~i~~d----~~tg~~rG~aFVeF 154 (477)
..+...... .....|...=+|....-+.-++++++-|.- +-|-+.+. -...+...-..--|
T Consensus 138 vY~l~~~~~---------~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlF 208 (274)
T PF04278_consen 138 VYQLAQENK---------KKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLF 208 (274)
T ss_dssp HHHHHHHTT---------T-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEE
T ss_pred HHHHHHHhh---------cCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEE
Confidence 111111110 133355555666655555555555433321 11222222 11111123456677
Q ss_pred CCHHHHHHHHHhcCC
Q 011796 155 DSEEAVDRVLHKTFH 169 (477)
Q Consensus 155 ~s~e~a~~Al~~~~~ 169 (477)
-+.+++++++++..+
T Consensus 209 F~kedL~~~l~k~~k 223 (274)
T PF04278_consen 209 FDKEDLQAALEKAKK 223 (274)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred ecHHHHHHHHHHHHH
Confidence 889999999988763
No 252
>PHA00019 IV phage assembly protein
Probab=43.61 E-value=1.3e+02 Score=31.99 Aligned_cols=30 Identities=10% Similarity=0.301 Sum_probs=23.5
Q ss_pred CCccCcHHHHHHHHhccCCeeEEEEeecCC
Q 011796 13 ISWDTDEERLKEYFSRYGEVVEAVIMRDRA 42 (477)
Q Consensus 13 LP~~~tee~Lre~F~~~G~V~~v~i~~d~~ 42 (477)
+|.++.+.+|+++|.-++++..+.++.++.
T Consensus 24 ~~l~f~~~dI~~vl~~la~~~g~NiVidp~ 53 (428)
T PHA00019 24 LPVELNNSPIREFVSWYSQQTGKSVVLGPD 53 (428)
T ss_pred eEEEecCCCHHHHHHHHHHhcCceEEECCC
Confidence 445667788999999888888888888754
No 253
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.28 E-value=85 Score=28.41 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc---CCeeEEEEeecCCC---------CCccc-EEEEEeCCHHHHH
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY---GEVVEAVIMRDRAT---------GRARG-FGFVVFADPAVAE 61 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~---G~V~~v~i~~d~~t---------g~srG-~aFVeF~~~e~A~ 61 (477)
.|..+|+++-++.-++|++.++..++- .+++.|.+-+.+++ ..-|. |-+|.|.+-+...
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 466899999999999999999988753 56777776554331 12234 8899998876554
No 254
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=42.38 E-value=64 Score=28.65 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=52.1
Q ss_pred cEEEEcCCC----ccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEE-eCCHHHHHHHH-HcCCccCCeEEEEee
Q 011796 6 GKLFIGGIS----WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVV-FADPAVAERVI-MDKHMIDGRTVEAKK 79 (477)
Q Consensus 6 ~~LfVgnLP----~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVe-F~~~e~A~kAl-~~~~~i~Gr~l~V~~ 79 (477)
.-+++++|. ..+.-++||++|++.| ..+|+-... + |-.+++ =.++++.++.| ..-....+..+.|-.
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456788774 3478999999999987 455553332 2 233333 23334444333 111122233333332
Q ss_pred cCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEE
Q 011796 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138 (477)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~ 138 (477)
-...+-......++-... ...+.++++|--|....+.+.+.++-..-...+.+.+.
T Consensus 77 rs~~el~~i~~~nPf~~~---~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWE---AEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT--GGGG---S----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHCCCccc---ccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 222222222222221111 11356678888888888888888887655444666554
No 255
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.60 E-value=19 Score=35.66 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=34.0
Q ss_pred CcEEEEcCCCcc------------CcHHHHHHHHhccCCeeEEEEe-e----cCCCCCcccEEEE
Q 011796 5 LGKLFIGGISWD------------TDEERLKEYFSRYGEVVEAVIM-R----DRATGRARGFGFV 52 (477)
Q Consensus 5 ~~~LfVgnLP~~------------~tee~Lre~F~~~G~V~~v~i~-~----d~~tg~srG~aFV 52 (477)
-.+|++-.||.. -+|+.|+..|+.||+|..|.|+ . ...+++..|.-|-
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceee
Confidence 457888889853 3678899999999999888764 2 3345665444443
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.58 E-value=25 Score=32.80 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=49.3
Q ss_pred cEEEEcCCCccC-cHH----HHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCe-EEEE
Q 011796 6 GKLFIGGISWDT-DEE----RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-TVEA 77 (477)
Q Consensus 6 ~~LfVgnLP~~~-tee----~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr-~l~V 77 (477)
..|++-+|+.++ ++. ..+.+|..|.+.+...+++ +.++--|-|.+++.|..|. ++...|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 347777888763 222 2345666666655555544 3346678899999999988 778888888 7877
Q ss_pred eecCCcc
Q 011796 78 KKAVPRD 84 (477)
Q Consensus 78 ~~a~~~~ 84 (477)
-.+.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776543
No 257
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=40.50 E-value=73 Score=27.60 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 011796 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHE 170 (477)
Q Consensus 115 ~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~ 170 (477)
..++++||+-+.++.+ -+.+.|.+||++++-+
T Consensus 73 ~~i~~edI~lv~~q~g------------------------vs~~~A~~AL~~~~gD 104 (115)
T PRK06369 73 VEIPEEDIELVAEQTG------------------------VSEEEARKALEEANGD 104 (115)
T ss_pred CCCCHHHHHHHHHHHC------------------------cCHHHHHHHHHHcCCc
Confidence 4689999999999876 2689999999988743
No 258
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=40.36 E-value=1e+02 Score=31.66 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeec
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD 40 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d 40 (477)
...++|++-+=.|.--|.|++..++-|.-....+.++
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d 116 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKED 116 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccC
Confidence 3488999999888888888888887774333333333
No 259
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=40.26 E-value=1.4e+02 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=31.3
Q ss_pred HHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 19 EERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 19 ee~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
++.++++++++| +|+++.+..- ..--...+|+.|.+.|.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHH
Confidence 345778888774 7888887764 33457899999999988877
No 260
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=39.85 E-value=2e+02 Score=23.08 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHh-hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
.+|..+.-+||++-. ..||.-.++....+ --.|-..+.++.++|++.++..-.-+.|+|-..
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 456677777777666 56898777777644 267888999999999999986555566666543
No 261
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.75 E-value=2.2e+02 Score=22.66 Aligned_cols=55 Identities=9% Similarity=-0.033 Sum_probs=38.4
Q ss_pred EEEcCCCccCcHHHHHHHHhcc-------CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 8 LFIGGISWDTDEERLKEYFSRY-------GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~~-------G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
|..++||..+|.++|.+.-.+- -.|.-++-..++. +.|-||+.+=.|+|+++++-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~ 64 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHA 64 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHH
Confidence 5678899989999988766442 3444454444432 34668888889999988887
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=8.9 Score=40.30 Aligned_cols=75 Identities=4% Similarity=-0.194 Sum_probs=55.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.+.|+..||...++++|.-+|+.|+.|..+.+.+....+..+-.+||.-.+. .+..++ +.-..+.+.++.+..+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 45678899999999999999999999998888877766666777888876553 344455 4445555555555444
No 263
>PRK11901 hypothetical protein; Reviewed
Probab=34.25 E-value=57 Score=33.28 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHhcCCcc
Q 011796 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDRVLHKTFHEL 171 (477)
Q Consensus 116 ~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV--eF~s~e~a~~Al~~~~~~l 171 (477)
...+++|++|.+++. +..++|.+....+++- |.+| .|.+.++|++|++.|...|
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 356888999998885 5667776654444432 3332 4689999999999987544
No 264
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.96 E-value=7.5 Score=41.97 Aligned_cols=66 Identities=3% Similarity=0.055 Sum_probs=47.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
..++.|||.|++++++-++|..+++.+--+.++.+..+..-.+..-+..|+|+---.++.|+..++
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456789999999999999999999998766666555443333444578899976544454444444
No 265
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.65 E-value=3.6e+02 Score=24.35 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=35.3
Q ss_pred eeecCCCCCCCHHHHHHHhhh-cC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 011796 108 IFVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (477)
Q Consensus 108 lfV~nLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al 164 (477)
-++--++...+..+|++.+++ |+ .|..|..+.-+... =-|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~---KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL---KKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc---eEEEEEECCCCcHHHHH
Confidence 445556778999999999987 54 45666655544311 15999997666544433
No 266
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=33.17 E-value=1.2e+02 Score=31.64 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=35.3
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC--HHHHHHHH--HcCC--ccCCeEEEEeecC
Q 011796 18 DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD--PAVAERVI--MDKH--MIDGRTVEAKKAV 81 (477)
Q Consensus 18 tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~--~e~A~kAl--~~~~--~i~Gr~l~V~~a~ 81 (477)
.+.+|+++|..+.++....++.++. -+|..=+.+.+ .++|-.++ .++. ..++..+.|....
T Consensus 3 ~~adI~~vl~~la~~~g~NiVidp~---V~G~VTl~~~~V~~~qal~~iL~~~gl~~~~~g~i~~I~p~~ 69 (386)
T PRK10560 3 DDVPVAQVLQALAEQEKLNLVVSPD---VSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQA 69 (386)
T ss_pred cCCCHHHHHHHHHHhcCceEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCcEEEeCCEEEEEchh
Confidence 4567888888888888888888754 23444444433 44444444 3332 2246666665543
No 267
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.11 E-value=95 Score=24.87 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=39.3
Q ss_pred EEEEcCCCccCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 7 KLFIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
.-|+=.++.+++..+|++.++. |+ +|..|..+.-+. ..--|||.+...+.|.++-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 3455567889999999999987 44 677777665442 2225999998888777653
No 268
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=31.41 E-value=1.7e+02 Score=30.06 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=28.6
Q ss_pred ceeecCCCCCCCHHHHH---HHhhhcCcEEEEEEEecCCCCCcceEEEEEe
Q 011796 107 KIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~---~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF 154 (477)
..++.+||.++.+.+++ +++++. .+.+|.|..+.....+.|++++-+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 46788899888876554 445552 234556665555456667665544
No 269
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.67 E-value=1.1e+02 Score=27.54 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 112 GLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 112 nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.|+..+.++.|+++.+-+|.|.+.. -+| -.+.|-+.+.+++||+.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4678889999999999999887776 333 4567889999999998754
No 270
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=30.03 E-value=1.3e+02 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.465 Sum_probs=28.6
Q ss_pred cCcHHHHHHHHhc-cCCeeEEE----EeecCCCCCcccEEEEEeCCHHHHHH
Q 011796 16 DTDEERLKEYFSR-YGEVVEAV----IMRDRATGRARGFGFVVFADPAVAER 62 (477)
Q Consensus 16 ~~tee~Lre~F~~-~G~V~~v~----i~~d~~tg~srG~aFVeF~~~e~A~k 62 (477)
.++.+||+|.+.+ |=.-.++. +...--.+++.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4788899988876 42222222 3333346789999998 566665554
No 271
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=29.89 E-value=1.3e+02 Score=28.51 Aligned_cols=62 Identities=29% Similarity=0.333 Sum_probs=38.2
Q ss_pred CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH---HcCCccC--CeEEEEeecCC
Q 011796 17 TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMID--GRTVEAKKAVP 82 (477)
Q Consensus 17 ~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~--Gr~l~V~~a~~ 82 (477)
.+.++.+++++.+..-. ++|..| +...|-+.+.+.+.++|.+++ +..+.+. +.+|.|+.-..
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred CCHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 46777888888775332 455555 444455667779999999998 5444443 56666665443
No 272
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.68 E-value=1.1e+02 Score=24.95 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=39.5
Q ss_pred EEEcCCCccCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 8 LFIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
-|+=-++.+++..+|++.++. |+ +|..|..+..+. ..--|||.+...+.|.++.
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 444456788999999999987 54 677777766542 2225999999988888764
No 273
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=29.61 E-value=1.3e+02 Score=28.80 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=36.3
Q ss_pred CCCHHHHHHH---hhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 116 TVTESDFKKY---FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 116 ~~teedL~~~---F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.+++++|++| ..+|| +...|++|+.+..++-..|+.=.+.+.+.+|++.+.
T Consensus 38 ~i~~~~lk~F~k~AkKyG--V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~ 91 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG--VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFS 91 (204)
T ss_pred ecCHhhHHHHHHHHHHcC--CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHH
Confidence 5666666655 46788 456677787776666566666678999999998876
No 274
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.62 E-value=40 Score=22.97 Aligned_cols=16 Identities=56% Similarity=0.783 Sum_probs=10.3
Q ss_pred ccCcHHHHHHHHhccC
Q 011796 15 WDTDEERLKEYFSRYG 30 (477)
Q Consensus 15 ~~~tee~Lre~F~~~G 30 (477)
.++++++||+.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998653
No 275
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=28.39 E-value=1.5e+02 Score=29.26 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccC--CeeEEEEeecCCCCC-----------cccEEEEEeCCHHHHHHHH-Hc
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGR-----------ARGFGFVVFADPAVAERVI-MD 66 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G--~V~~v~i~~d~~tg~-----------srG~aFVeF~~~e~A~kAl-~~ 66 (477)
|+..+++.|+. |+..++++-|.-|.+++| +|+... .+|. .++ ..-||.|-|....+-+++. ..
T Consensus 154 ~Dh~nr~aY~~-lS~Rad~~lLe~fc~~~gy~~vvf~q-T~de-~g~PiYHTNVmMaige~favic~~~i~~~~R~~vir 230 (318)
T COG4874 154 MDHPNRTAYAG-LSQRADRELLEVFCEQIGYSRVVFFQ-TRDE-SGSPIYHTNVMMAIGEHFAVICDEAIPEYERRFVIR 230 (318)
T ss_pred ecccchhhhhh-hhcccCHHHHHHHHHHcCCceeeeee-eccc-cCCcceehhHHHHhhhheeeeeccccccHHHHHHHH
Confidence 45567777775 888888887777777776 333321 1111 122 1347777765544444332 11
Q ss_pred CCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEE
Q 011796 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138 (477)
Q Consensus 67 ~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~ 138 (477)
...-++|.|..- +..+- +...-+.-.. ...+..+.|-+.--.+.+-.+..+.+.++++.|+.+.|+
T Consensus 231 ~L~~dgkeiv~i-s~~Q~--~hF~GN~ieL---~~~~n~~v~aMSa~Ay~~lTd~Q~niie~~~~ivp~~Vp 296 (318)
T COG4874 231 SLAKDGKEIVSI-SIEQM--NHFCGNIIEL---ETADNQKVIAMSASAYEALTDTQLNIIETHGKIVPFAVP 296 (318)
T ss_pred HHHhCCCeEEEe-eHHHH--HHhhccceEe---eccCCceEEEeehhHHHHhhHHHHHHHHhhCeeeeeccc
Confidence 122233433221 11100 0000000000 001122344444445555556677888999998877665
No 276
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=27.90 E-value=6.8e+02 Score=27.19 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=63.9
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEe--ecCCCCCcccEEEEEeCC-----HHHHHHHHHcCCccCCeEEEEe
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIM--RDRATGRARGFGFVVFAD-----PAVAERVIMDKHMIDGRTVEAK 78 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~--~d~~tg~srG~aFVeF~~-----~e~A~kAl~~~~~i~Gr~l~V~ 78 (477)
..|.+++ ..+..++|++.+.++-.|.++.++ .+.........++|.+.+ .++..+.+.+. +
T Consensus 463 d~ik~~G--~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~--L-------- 530 (600)
T PRK08279 463 DTFRWKG--ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYER--L-------- 530 (600)
T ss_pred CeEEECC--cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhh--C--------
Confidence 3444443 357788899999988888888764 222222234456665542 22222222110 0
Q ss_pred ecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCC----CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEe
Q 011796 79 KAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTV----TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (477)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~----teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF 154 (477)
+....+...++|..||.+. ...+|++.+...-.|..+..+.|+.. + +.+..
T Consensus 531 --------------------~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~---~--~~~~~ 585 (600)
T PRK08279 531 --------------------PAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGS---G--GYVPL 585 (600)
T ss_pred --------------------ccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCC---C--ceEec
Confidence 0011234456677777664 45566666655555666666666542 3 34555
Q ss_pred CCHHHHHHH
Q 011796 155 DSEEAVDRV 163 (477)
Q Consensus 155 ~s~e~a~~A 163 (477)
.++-.|+-+
T Consensus 586 ~~~~~~~~~ 594 (600)
T PRK08279 586 TAELYAEIA 594 (600)
T ss_pred CHHHHHHHh
Confidence 555544443
No 277
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.80 E-value=3e+02 Score=24.15 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=39.5
Q ss_pred CCHHHHHHHhhhcCc-EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCC-eEEEEEEc
Q 011796 117 VTESDFKKYFDQFGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNG-KMVEVKRA 181 (477)
Q Consensus 117 ~teedL~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~G-r~l~V~~a 181 (477)
.+-+++++.+++-+. ++.+....+ ...|.|++.|+..+|.+.+...+.. -.|.+..+
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 567788899988763 344444322 5899999999999999888865644 35555544
No 278
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.52 E-value=2.8e+02 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=14.0
Q ss_pred EEEEeCCHHHHHHHH
Q 011796 50 GFVVFADPAVAERVI 64 (477)
Q Consensus 50 aFVeF~~~e~A~kAl 64 (477)
-+|.+.+.++.+.|+
T Consensus 56 d~V~l~~D~DL~~a~ 70 (91)
T cd06398 56 DVVTLVDDNDLTDAI 70 (91)
T ss_pred CEEEEccHHHHHHHH
Confidence 589999999999999
No 279
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=27.23 E-value=3e+02 Score=21.95 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=35.2
Q ss_pred eecCCCCCCCHHHHHHHh-------hhcCcEEEEEEEecCCCCC-cce---EEEEEeCCHHHHHHHH
Q 011796 109 FVGGLASTVTESDFKKYF-------DQFGTITDVVVMYDHNTQR-PRG---FGFITYDSEEAVDRVL 164 (477)
Q Consensus 109 fV~nLp~~~teedL~~~F-------~~~G~V~~v~i~~d~~tg~-~rG---~aFVeF~s~e~a~~Al 164 (477)
.+-.|...++++++++++ .+.-.|+++.+-++..... .++ .-+++|++.++.++-+
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 334566778877775544 3456788888777654332 122 3467889998876544
No 280
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.81 E-value=1.2e+02 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=15.2
Q ss_pred HHHHHHHHhccCCeeEEEE
Q 011796 19 EERLKEYFSRYGEVVEAVI 37 (477)
Q Consensus 19 ee~Lre~F~~~G~V~~v~i 37 (477)
-++||++|++.|+|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3589999999999865554
No 281
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=26.39 E-value=1.8e+02 Score=32.22 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=42.6
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEcCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHE-LNGKMVEVKRAVP 183 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~-l~Gr~l~V~~a~~ 183 (477)
.-.|.-+||.++ |.|.++.-+ +++..+++|-|.| |+++|++.+||..-..+ -.+..|.|.+.-|
T Consensus 378 gl~iL~GNLAP~-------------GaViK~sav-~~~~~~~~GpA~V-F~see~a~~ai~~g~i~i~~GdVvVIRyeGP 442 (577)
T PRK13016 378 SLAVLRGNLAPD-------------GAVIKPAAC-DPKFLVHRGPALV-FDSYPEMKAAIDDENLDVTPDHVMVLRNAGP 442 (577)
T ss_pred CEEEeecCCCCC-------------ceEEEeccc-CCcccEEEeeEEE-ECCHHHHHHHHhCCCcCCCCCeEEEEeCCCC
Confidence 345556676553 445444433 2222456777755 99999999999877643 3677888888776
Q ss_pred CC
Q 011796 184 KE 185 (477)
Q Consensus 184 k~ 185 (477)
|-
T Consensus 443 kG 444 (577)
T PRK13016 443 QG 444 (577)
T ss_pred CC
Confidence 64
No 282
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.23 E-value=2.7e+02 Score=20.23 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=39.5
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCH----HHHHHHH
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP----AVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~----e~A~kAl 64 (477)
+|.|.+|.-......|++.+.+.-.|.++.+-... ...-|+|..+ ++..++|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i 56 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAI 56 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHH
Confidence 57899999999999999999999889888875543 2577888644 4455555
No 283
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.80 E-value=91 Score=33.87 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=42.8
Q ss_pred EEcCCCccC---cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEE
Q 011796 9 FIGGISWDT---DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTV 75 (477)
Q Consensus 9 fVgnLP~~~---tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l 75 (477)
+|+||+.-. ....|.++=++||+|-.+++=.. -.|...+.+.|++|+ .+...+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 456666442 33456666678999998777443 368889999999999 77888888875
No 284
>PF14893 PNMA: PNMA
Probab=24.70 E-value=63 Score=33.24 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=22.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhh
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQ 128 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~ 128 (477)
+..+.|.|.+||.+|++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45678999999999999999998864
No 285
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.50 E-value=88 Score=31.34 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHH
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPA 58 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e 58 (477)
.+-|+|.|||.++--.||+..+.+-+-+ -..|... -.++-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 3459999999999999999999876432 1223222 24567999997643
No 286
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.90 E-value=24 Score=31.17 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=32.0
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCCC
Q 011796 148 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185 (477)
Q Consensus 148 G~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k~ 185 (477)
++..++|+++++++++++.....+++..|.++.-.|..
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~ 93 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF 93 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccc
Confidence 48999999999999999887777888888887766543
No 287
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.83 E-value=2.4e+02 Score=23.76 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHhc-cCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHH
Q 011796 16 DTDEERLKEYFSR-YGEVVEAVIMRDRA----TGRARGFGFVVFADPAVAERV 63 (477)
Q Consensus 16 ~~tee~Lre~F~~-~G~V~~v~i~~d~~----tg~srG~aFVeF~~~e~A~kA 63 (477)
+.+..+|++.+.+ ++.-.+..++..-. .++++|||.| |.+.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4677788887754 55433444433322 2567778777 5666666554
No 288
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.02 E-value=24 Score=26.32 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=22.2
Q ss_pred cceEEEEEeCC-HHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 146 PRGFGFITYDS-EEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 146 ~rG~aFVeF~s-~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
++||+||.-++ .++.--....++.-+++-+|.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 47899999987 22322234455566788888888766
No 289
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=22.88 E-value=1e+03 Score=26.13 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=34.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
|+-|+=.+..+.+.++||+.++++|+ ++.+..+.. .--..|.-.++..+....
T Consensus 226 ctef~i~~~~~~~~~~lr~~L~~~Gd--Slvvv~~~~----~~kVHvHt~~Pg~vle~~ 278 (530)
T TIGR03599 226 CTEFLVKLKDKFDEEKFRKELEKLGD--SLVVVGDDD----LVKVHVHTNDPGLVLEYG 278 (530)
T ss_pred EEEEEEEcCCccCHHHHHHHHHhcCC--EEEEEeCCC----eEEEEEecCCHHHHHHHH
Confidence 55555555446789999999999996 444554432 123556667787776665
No 290
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=19 Score=37.91 Aligned_cols=76 Identities=5% Similarity=-0.192 Sum_probs=56.6
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+.|+..||...+++++.-+|+.|+.|..+...+--+..-.+-.+||+-.. +++..||+.+. ..+.+.+++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 466888999999999999999999999888765544444445577887654 44566666666 67778888877765
No 291
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.72 E-value=59 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=28.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDV 135 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v 135 (477)
...++||+-|+|..+|++.|+++..+++.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 356789999999999999999999998865544
No 292
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=22.65 E-value=2.4e+02 Score=31.27 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=43.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-cCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHE-LNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~-l~Gr~l~V~~a~ 182 (477)
..-.|.-+||.++ |.|.++.-+.. +-.+.+|-|.| |+++|++.+||..-..+ -.+..|.|.+.-
T Consensus 372 Ggl~vL~GNLaP~-------------GaViK~sav~~-~~~~~~G~A~V-F~see~a~~ai~~g~i~i~~gdVvVIRyeG 436 (571)
T PRK06131 372 GGIAVLRGNLAPD-------------GAVIKPSAASP-ELLKHEGRAVV-FEGYEDYKARIDDPDLDVDEDTVLVLRNAG 436 (571)
T ss_pred CCeEEeecCCCCC-------------CceeeecccCc-cccEEEeeeEE-ECCHHHHHHHHhCCCcCCCCCeEEEEeCCC
Confidence 3456777787543 44554443322 22345677755 99999999999776643 377788888877
Q ss_pred CCC
Q 011796 183 PKE 185 (477)
Q Consensus 183 ~k~ 185 (477)
||-
T Consensus 437 PkG 439 (571)
T PRK06131 437 PKG 439 (571)
T ss_pred CCC
Confidence 764
No 293
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.55 E-value=2e+02 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.011 Sum_probs=21.3
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEE
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVI 37 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i 37 (477)
.--|..||.++-+++|+..|+.+. |.-+++
T Consensus 49 V~~v~~v~~~~v~~Ql~av~~D~~-v~avKt 78 (263)
T COG0351 49 VHGVHPVPPEFVEAQLDAVFSDIP-VDAVKT 78 (263)
T ss_pred eeeEEeCCHHHHHHHHHHHhhcCC-CCEEEE
Confidence 345778888888889998888773 444443
No 294
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.59 E-value=1.9e+02 Score=29.92 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=29.9
Q ss_pred EcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH---HcCCccCCeEEEEeec
Q 011796 10 IGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 10 VgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~Gr~l~V~~a 80 (477)
.+||+.+--.++|..+. +.-+|.+|.+|-.-+ - +.+.+.+.+++ .+...|.-+.|.|...
T Consensus 121 ~RnLs~~EI~~Qv~~~~-~~~~i~nIVfmGmGE-------P---l~N~d~vl~ai~~l~~~~~i~~r~itiST~ 183 (344)
T PRK14464 121 LRQLGSAEIVAQVVLAR-RRRAVKKVVFMGMGE-------P---AHNLDNVLEAIDLLGTEGGIGHKNLVFSTV 183 (344)
T ss_pred CCCCCHHHHHHHHHHHH-hcCCCCEEEEeccCc-------c---cCCHHHHHHHHHHhhchhcCCCceEEEecc
Confidence 45554332222333222 345688888875322 1 23445555554 2234556677777443
No 295
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.54 E-value=2.2e+02 Score=25.70 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=34.0
Q ss_pred EEcCCCccCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 011796 9 FIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63 (477)
Q Consensus 9 fVgnLP~~~tee~Lre~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kA 63 (477)
|+=-+..+++..+|++.++. |+ +|..|..+..+. + .--|||.+....+|...
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHH
Confidence 33345668999999999887 54 566776555432 1 12599999776665443
No 296
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=21.44 E-value=3e+02 Score=22.63 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=21.8
Q ss_pred EEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 150 aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
-+|.+.+.++.+.|++.+...-..++|+|.
T Consensus 56 d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~ 85 (91)
T cd06398 56 DVVTLVDDNDLTDAIQYFCSGSRLNPLRID 85 (91)
T ss_pred CEEEEccHHHHHHHHHHHhccCCCceEEEE
Confidence 589999999999999986433334444444
No 297
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=21.20 E-value=4.3e+02 Score=25.08 Aligned_cols=72 Identities=14% Similarity=0.336 Sum_probs=47.3
Q ss_pred eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceee
Q 011796 32 VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFV 110 (477)
Q Consensus 32 V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 110 (477)
+.-|..++++ +-|.++|+|.+.| .+++.+.-..|+|....+... +.+++|||
T Consensus 37 l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~VN-----------------E~TkkIYI 89 (238)
T PF10915_consen 37 LQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSVN-----------------EQTKKIYI 89 (238)
T ss_pred CCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcccc-----------------cccceEEE
Confidence 4445566665 3689999999999 777777777888877665532 24555555
Q ss_pred cCCCC--------CCCHHHHHHHhhhcC
Q 011796 111 GGLAS--------TVTESDFKKYFDQFG 130 (477)
Q Consensus 111 ~nLp~--------~~teedL~~~F~~~G 130 (477)
..+.- .-.+|.|.+..++|-
T Consensus 90 CPFTGKVF~DNt~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 90 CPFTGKVFGDNTHPNPQDAIYDWVSKCP 117 (238)
T ss_pred cCCcCccccCCCCCChHHHHHHHHhhCC
Confidence 43321 124577888888874
No 298
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=4.5e+02 Score=25.80 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred EEEEcCCCcc--CcHHHHHHHHhccCC----eeEEEEeecCCCCCcccEEEEEeC----CHHHHHHHH
Q 011796 7 KLFIGGISWD--TDEERLKEYFSRYGE----VVEAVIMRDRATGRARGFGFVVFA----DPAVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~--~tee~Lre~F~~~G~----V~~v~i~~d~~tg~srG~aFVeF~----~~e~A~kAl 64 (477)
-|+|--|... =|-.+||..|.++|- -=+|.+|.++. +.|+|. ++++...++
T Consensus 96 aiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~k-------Gvi~~~~~~~~ed~l~e~~ 156 (241)
T COG0217 96 AIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRK-------GVIVVEKNEIDEDELLEAA 156 (241)
T ss_pred EEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEecc-------EEEEECCCCCCHHHHHHHH
Confidence 3566666654 577899999999852 33588888874 566665 556655555
No 299
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.95 E-value=59 Score=35.30 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=27.4
Q ss_pred ccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 47 RGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 47 rG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
..++++.|++++.+.+|+ .++....+..+.+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 348999999999999998 6666666666666555443
No 300
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.94 E-value=76 Score=26.10 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=32.5
Q ss_pred EEEcCCCccCcHHHHHHHHhc-cC-CeeEEEEeecCC----CCCc------ccEEEEEeCCHHH
Q 011796 8 LFIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRA----TGRA------RGFGFVVFADPAV 59 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~-~G-~V~~v~i~~d~~----tg~s------rG~aFVeF~~~e~ 59 (477)
.++=.++.+++..||+++++. |+ +|++|..+.-+- .++. .=-|+|.+.+.+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 344457889999999999987 55 466776554320 1111 1248888876643
No 301
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.91 E-value=3.8e+02 Score=21.26 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=33.5
Q ss_pred EcCCCccCcHHHHHHHH-------hccCCeeEEEEeecCCCCC-cccE---EEEEeCCHHHHHHHH
Q 011796 10 IGGISWDTDEERLKEYF-------SRYGEVVEAVIMRDRATGR-ARGF---GFVVFADPAVAERVI 64 (477)
Q Consensus 10 VgnLP~~~tee~Lre~F-------~~~G~V~~v~i~~d~~tg~-srG~---aFVeF~~~e~A~kAl 64 (477)
+-.|..+++++++.+++ ..+-.|+++.+-++..+.. .++| -+++|.+.++.+.-+
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 33466777877775544 3345678888766543322 3444 456788888876655
No 302
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=20.56 E-value=77 Score=35.50 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=55.0
Q ss_pred cCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCCcchhhhhccCCC
Q 011796 16 DTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTS 94 (477)
Q Consensus 16 ~~tee~Lre~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~ 94 (477)
.+...||+..+..+-.|.++-++-.++. .-..-+|||.+++.+.....|.......-|+.
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~------------------- 567 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSV------------------- 567 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhh-------------------
Confidence 3567789999999999988877643321 22344789988765333333200000000000
Q ss_pred CCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhc
Q 011796 95 SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (477)
Q Consensus 95 ~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~ 129 (477)
..+-....+.++|.+||++.+-..+|.++.+.
T Consensus 568 ---igp~a~P~~I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 568 ---IGPYAVPRLIVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred ---cCcccccceeEecCCCCccccchhHHHHHHHH
Confidence 01111345678999999999988888888764
No 303
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.53 E-value=72 Score=21.60 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.5
Q ss_pred cCcHHHHHHHHhccCCe
Q 011796 16 DTDEERLKEYFSRYGEV 32 (477)
Q Consensus 16 ~~tee~Lre~F~~~G~V 32 (477)
.+++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 47899999999999854
No 304
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=20.52 E-value=3.7e+02 Score=26.25 Aligned_cols=42 Identities=10% Similarity=0.261 Sum_probs=28.1
Q ss_pred EEEEcCCCcc--CcHHHHHHHHhccCC-e---eEEEEeecCCCCCcccEEEEEeC
Q 011796 7 KLFIGGISWD--TDEERLKEYFSRYGE-V---VEAVIMRDRATGRARGFGFVVFA 55 (477)
Q Consensus 7 ~LfVgnLP~~--~tee~Lre~F~~~G~-V---~~v~i~~d~~tg~srG~aFVeF~ 55 (477)
-|+|--|... =|..+||.+|+++|- + -++..+.++. +.|+|.
T Consensus 96 aiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~k-------G~i~~~ 143 (238)
T TIGR01033 96 AIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRK-------GVIEVP 143 (238)
T ss_pred EEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecc-------eEEEEC
Confidence 3455555444 467799999999864 2 2467777763 778885
No 305
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.23 E-value=1e+02 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=20.7
Q ss_pred cceEEEEEeCCHHHHHHHHHhcCC
Q 011796 146 PRGFGFITYDSEEAVDRVLHKTFH 169 (477)
Q Consensus 146 ~rG~aFVeF~s~e~a~~Al~~~~~ 169 (477)
.+||-|||=++++++++|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 589999999999999999977654
No 306
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.18 E-value=1.4e+02 Score=33.07 Aligned_cols=111 Identities=9% Similarity=0.163 Sum_probs=61.7
Q ss_pred cccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEe----ecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHH
Q 011796 46 ARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK----KAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120 (477)
Q Consensus 46 srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee 120 (477)
+.+.-|..++++++.++++ .+++ |+|-++ |...-++.+..--.+.... ......+++ ..+++.++.
T Consensus 451 ~~~~~~q~~s~~~~L~~~la~~~~----~pVmlDfyAdWCvtCK~~e~~tfsd~~v~----~~~~~~vlL-qaDvT~~~p 521 (569)
T COG4232 451 SHGEFWQPISPLAELDQALAEAKA----KPVMLDFYADWCVTCKENEKYTFSDPQVQ----QALQDVVLL-QADVTANDP 521 (569)
T ss_pred ccchhhhccCCHHHHHHHHHhCCC----CcEEEeeehhHHHHhHhhhhhccCcHHHH----HhcCCeEEE-EeeecCCCH
Confidence 3444557778887777777 4443 455544 3333322221110000000 001112222 335566678
Q ss_pred HHHHHhhhcCcE-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 121 DFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 121 dL~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
+++++.++|+.+ .-..+..+++..++.. ...|-+++...+.+++.
T Consensus 522 ~~~~lLk~~~~~G~P~~~ff~~~g~e~~~--l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 522 AITALLKRLGVFGVPTYLFFGPQGSEPEI--LTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCcCcC--CcceecHHHHHHHHHHh
Confidence 889999988766 3455566666555543 88999999999888764
Done!