Query 011796
Match_columns 477
No_of_seqs 359 out of 2037
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.3E-36 1.1E-40 280.2 21.0 177 3-189 11-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 8.7E-36 3E-40 270.4 14.8 167 3-185 1-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 5.5E-35 1.9E-39 277.9 20.8 168 3-186 13-183 (213)
4 2qfj_A FBP-interacting repress 100.0 8.4E-35 2.9E-39 274.8 17.0 180 4-188 27-209 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 8.4E-34 2.9E-38 256.1 20.4 163 6-183 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.5E-34 2.2E-38 257.9 19.6 162 4-181 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 1.6E-33 5.4E-38 254.6 21.2 161 5-181 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 7E-33 2.4E-37 252.5 19.0 164 3-182 1-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 2.1E-33 7.1E-38 261.7 13.4 178 3-186 2-196 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 6.8E-32 2.3E-36 245.8 18.3 158 3-182 2-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 1.8E-32 6.1E-37 250.9 12.8 163 3-185 11-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 1.6E-30 5.6E-35 256.6 20.6 170 3-186 93-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 3.2E-30 1.1E-34 254.3 21.3 172 3-182 7-281 (282)
14 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-30 5E-35 258.0 17.9 171 4-185 116-292 (292)
15 3tyt_A Heterogeneous nuclear r 100.0 1.8E-30 6.1E-35 246.1 16.9 171 4-181 3-204 (205)
16 2adc_A Polypyrimidine tract-bi 100.0 1E-29 3.6E-34 244.1 18.5 172 3-184 32-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 5.7E-30 1.9E-34 239.3 14.6 171 4-184 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-29 8.2E-34 249.2 17.0 160 2-187 38-200 (292)
19 3smz_A Protein raver-1, ribonu 100.0 8.9E-29 3E-33 244.2 20.5 156 3-187 20-178 (284)
20 3sde_A Paraspeckle component 1 100.0 4.2E-29 1.4E-33 244.6 17.6 156 3-187 20-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-23 3.8E-28 190.3 16.1 148 34-187 2-153 (158)
22 2i2y_A Fusion protein consists 99.9 6.9E-22 2.4E-26 177.3 13.0 136 44-185 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 6.6E-22 2.2E-26 169.9 10.1 108 4-121 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 7.4E-20 2.5E-24 153.1 10.9 79 4-82 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 9.6E-21 3.3E-25 198.6 6.2 169 21-189 8-187 (437)
26 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-19 4.8E-24 151.4 11.0 80 104-183 18-98 (99)
27 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.1E-19 1.7E-23 159.6 12.6 84 103-186 37-121 (156)
28 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.6E-24 149.6 6.4 83 105-187 1-86 (91)
29 2lxi_A RNA-binding protein 10; 99.8 9.3E-20 3.2E-24 150.0 5.9 82 5-86 1-86 (91)
30 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-18 5.5E-23 153.1 14.2 89 100-188 37-126 (139)
31 3s8s_A Histone-lysine N-methyl 99.8 7.1E-19 2.4E-23 150.0 11.2 84 3-86 4-89 (110)
32 3s8s_A Histone-lysine N-methyl 99.8 9.1E-19 3.1E-23 149.3 11.5 83 103-185 4-87 (110)
33 2lea_A Serine/arginine-rich sp 99.8 2.1E-19 7.2E-24 158.8 7.6 122 49-187 6-130 (135)
34 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.9E-19 2.4E-23 160.5 11.1 137 52-188 11-156 (165)
35 2cqd_A RNA-binding region cont 99.8 2.8E-18 9.5E-23 147.0 14.2 86 101-186 13-98 (116)
36 2dgs_A DAZ-associated protein 99.8 1.8E-18 6E-23 143.9 12.5 87 102-188 7-93 (99)
37 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-18 5.4E-23 148.2 12.4 86 103-188 23-109 (115)
38 2dnz_A Probable RNA-binding pr 99.8 1.5E-18 5.2E-23 142.9 11.8 85 103-187 3-88 (95)
39 2cq0_A Eukaryotic translation 99.8 2.1E-18 7E-23 144.5 12.7 86 102-187 12-98 (103)
40 1whw_A Hypothetical protein ri 99.8 2.1E-18 7.1E-23 143.3 12.1 85 103-187 6-91 (99)
41 1x5u_A Splicing factor 3B subu 99.8 1.9E-18 6.7E-23 145.0 11.9 87 102-188 12-99 (105)
42 2dnm_A SRP46 splicing factor; 99.8 1.1E-18 3.7E-23 146.2 10.2 88 101-188 9-97 (103)
43 2dgs_A DAZ-associated protein 99.8 1.3E-18 4.6E-23 144.6 10.7 84 2-85 7-91 (99)
44 2lkz_A RNA-binding protein 5; 99.8 4.8E-19 1.7E-23 147.2 7.8 81 2-82 6-94 (95)
45 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.3E-23 145.4 10.2 87 103-189 10-97 (102)
46 2dgo_A Cytotoxic granule-assoc 99.8 4.4E-18 1.5E-22 145.4 13.7 87 102-188 12-99 (115)
47 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-18 4.4E-23 145.4 10.0 87 102-188 9-96 (102)
48 3md1_A Nuclear and cytoplasmic 99.8 2.8E-18 9.7E-23 137.6 11.2 81 105-185 1-82 (83)
49 1whw_A Hypothetical protein ri 99.8 1.8E-18 6.1E-23 143.7 10.3 85 2-86 5-91 (99)
50 2dh8_A DAZ-associated protein 99.8 1.9E-18 6.6E-23 145.2 10.5 87 102-188 13-99 (105)
51 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-18 3.8E-23 145.8 9.0 85 1-85 8-94 (102)
52 2do4_A Squamous cell carcinoma 99.8 5.1E-18 1.7E-22 141.3 12.9 84 102-186 14-98 (100)
53 2cph_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 143.7 12.2 88 101-188 11-101 (107)
54 2dng_A Eukaryotic translation 99.8 5.9E-18 2E-22 141.8 13.4 85 102-188 12-97 (103)
55 1x5t_A Splicing factor 3B subu 99.8 1.9E-18 6.5E-23 142.6 10.0 86 103-188 3-90 (96)
56 2dgo_A Cytotoxic granule-assoc 99.8 3.9E-18 1.3E-22 145.7 12.3 84 3-86 13-98 (115)
57 2cpf_A RNA binding motif prote 99.8 3.3E-18 1.1E-22 141.9 11.5 86 103-188 3-92 (98)
58 2d9p_A Polyadenylate-binding p 99.8 5.5E-18 1.9E-22 141.9 13.0 86 102-189 12-98 (103)
59 2dnz_A Probable RNA-binding pr 99.8 2.8E-18 9.5E-23 141.3 10.9 83 3-85 3-87 (95)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.6E-23 145.9 8.5 85 1-85 8-94 (102)
61 2cqg_A TDP-43, TAR DNA-binding 99.8 8.5E-18 2.9E-22 140.7 14.0 87 102-189 12-98 (103)
62 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-18 8.3E-23 139.2 10.3 81 3-83 4-86 (87)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 3.1E-18 1.1E-22 143.4 11.0 84 3-86 13-96 (103)
64 3s7r_A Heterogeneous nuclear r 99.8 2.6E-18 8.9E-23 139.3 10.2 79 2-80 8-87 (87)
65 3bs9_A Nucleolysin TIA-1 isofo 99.8 3E-18 1E-22 138.6 10.6 82 103-184 4-86 (87)
66 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.5E-18 8.6E-23 138.5 10.0 81 1-81 3-85 (85)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 4.9E-18 1.7E-22 142.5 12.0 84 103-188 13-98 (104)
68 2cpz_A CUG triplet repeat RNA- 99.8 2E-18 6.9E-23 147.6 9.8 83 3-85 23-107 (115)
69 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.8E-23 141.9 7.5 82 2-83 3-85 (89)
70 1x4h_A RNA-binding protein 28; 99.8 6.2E-18 2.1E-22 143.3 12.5 87 102-188 12-105 (111)
71 3s7r_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 138.3 10.7 80 102-181 8-87 (87)
72 2cqc_A Arginine/serine-rich sp 99.8 6.7E-18 2.3E-22 138.9 12.1 83 101-183 11-94 (95)
73 3md1_A Nuclear and cytoplasmic 99.8 4.5E-18 1.5E-22 136.4 10.7 80 5-84 1-82 (83)
74 2lkz_A RNA-binding protein 5; 99.8 8.1E-19 2.8E-23 145.8 6.5 81 103-183 7-94 (95)
75 2rs2_A Musashi-1, RNA-binding 99.7 3.7E-18 1.3E-22 145.1 10.5 85 103-187 23-107 (109)
76 2dgp_A Bruno-like 4, RNA bindi 99.7 3.6E-18 1.2E-22 143.7 10.3 86 102-187 10-99 (106)
77 2cq3_A RNA-binding protein 9; 99.7 1.2E-17 4.1E-22 139.8 13.4 87 101-189 11-98 (103)
78 2cq0_A Eukaryotic translation 99.7 2.6E-18 8.9E-23 143.9 9.2 83 3-85 13-97 (103)
79 2do4_A Squamous cell carcinoma 99.7 5.2E-18 1.8E-22 141.3 10.8 81 3-84 15-97 (100)
80 3lqv_A PRE-mRNA branch site pr 99.7 2.7E-18 9.3E-23 146.7 9.2 102 3-131 6-109 (115)
81 1x5u_A Splicing factor 3B subu 99.7 3.2E-18 1.1E-22 143.7 9.4 83 3-85 13-97 (105)
82 2dh8_A DAZ-associated protein 99.7 1.9E-18 6.5E-23 145.2 8.0 85 2-86 13-98 (105)
83 2dnh_A Bruno-like 5, RNA bindi 99.7 1E-17 3.5E-22 140.6 12.4 85 103-188 13-101 (105)
84 1x4h_A RNA-binding protein 28; 99.7 4.4E-18 1.5E-22 144.2 10.3 83 3-85 13-103 (111)
85 4f25_A Polyadenylate-binding p 99.7 4.9E-18 1.7E-22 145.6 10.6 82 104-187 4-86 (115)
86 1x5t_A Splicing factor 3B subu 99.7 2.7E-18 9.1E-23 141.7 8.6 84 2-85 2-88 (96)
87 2cpy_A RNA-binding protein 12; 99.7 2.2E-18 7.7E-23 147.4 8.4 88 2-90 12-101 (114)
88 2hvz_A Splicing factor, argini 99.7 4.9E-18 1.7E-22 141.7 10.2 99 6-115 1-101 (101)
89 3p5t_L Cleavage and polyadenyl 99.7 1.1E-18 3.6E-23 143.0 6.0 83 106-188 2-87 (90)
90 3q2s_C Cleavage and polyadenyl 99.7 3.3E-19 1.1E-23 171.5 3.4 82 104-185 67-151 (229)
91 2e5h_A Zinc finger CCHC-type a 99.7 8E-18 2.8E-22 138.3 11.2 81 102-182 13-94 (94)
92 1s79_A Lupus LA protein; RRM, 99.7 2.7E-18 9.2E-23 144.7 8.5 84 2-86 8-92 (103)
93 1x4b_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 146.4 9.3 86 103-188 25-110 (116)
94 2cqd_A RNA-binding region cont 99.7 9.3E-18 3.2E-22 143.7 11.9 83 2-85 14-98 (116)
95 2dhg_A TRNA selenocysteine ass 99.7 7.6E-18 2.6E-22 141.2 10.9 85 103-188 7-94 (104)
96 3p5t_L Cleavage and polyadenyl 99.7 1.5E-18 5.3E-23 142.0 6.5 80 6-85 2-85 (90)
97 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-17 7E-22 138.4 13.4 85 102-188 12-97 (103)
98 2dnm_A SRP46 splicing factor; 99.7 3.2E-18 1.1E-22 143.4 8.4 83 3-85 11-95 (103)
99 2cqc_A Arginine/serine-rich sp 99.7 7.1E-18 2.4E-22 138.8 10.4 80 3-82 13-94 (95)
100 1p27_B RNA-binding protein 8A; 99.7 7E-18 2.4E-22 141.9 10.5 84 103-186 21-105 (106)
101 2cpf_A RNA binding motif prote 99.7 3.6E-18 1.2E-22 141.6 8.5 84 2-85 2-90 (98)
102 1oo0_B CG8781-PA, drosophila Y 99.7 6.8E-18 2.3E-22 143.0 10.2 84 103-186 24-108 (110)
103 2cph_A RNA binding motif prote 99.7 5.8E-18 2E-22 142.5 9.7 84 2-85 12-99 (107)
104 2db1_A Heterogeneous nuclear r 99.7 3.6E-18 1.2E-22 147.3 8.5 87 3-90 15-105 (118)
105 2cpe_A RNA-binding protein EWS 99.7 7.6E-18 2.6E-22 143.4 10.5 86 102-187 12-106 (113)
106 3ns6_A Eukaryotic translation 99.7 2.3E-18 7.8E-23 144.0 7.0 83 3-85 4-95 (100)
107 2dng_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 141.4 9.9 82 3-85 13-95 (103)
108 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.5E-22 138.5 10.9 85 4-88 1-87 (96)
109 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.3E-18 2.5E-22 135.8 9.7 80 103-182 5-85 (85)
110 2e5h_A Zinc finger CCHC-type a 99.7 6.3E-18 2.2E-22 138.9 9.5 79 3-81 14-94 (94)
111 1p27_B RNA-binding protein 8A; 99.7 7.3E-18 2.5E-22 141.8 10.0 82 3-84 21-104 (106)
112 1wi8_A EIF-4B, eukaryotic tran 99.7 6.3E-18 2.2E-22 141.9 9.5 82 3-85 13-96 (104)
113 2rs2_A Musashi-1, RNA-binding 99.7 5.7E-18 2E-22 143.9 9.3 84 2-85 22-106 (109)
114 1wez_A HnRNP H', FTP-3, hetero 99.7 3.3E-18 1.1E-22 143.8 7.7 80 3-84 13-93 (102)
115 2fy1_A RNA-binding motif prote 99.7 1.3E-17 4.4E-22 143.3 11.3 84 103-187 5-89 (116)
116 2dgp_A Bruno-like 4, RNA bindi 99.7 5.4E-18 1.8E-22 142.6 8.8 84 2-85 10-98 (106)
117 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.4E-22 138.6 10.1 82 105-186 2-84 (96)
118 2jrs_A RNA-binding protein 39; 99.7 1.4E-17 4.8E-22 141.3 11.1 85 101-185 22-107 (108)
119 2kxn_B Transformer-2 protein h 99.7 8.7E-18 3E-22 147.3 10.1 85 101-185 42-127 (129)
120 2dnn_A RNA-binding protein 12; 99.7 4.1E-18 1.4E-22 145.1 7.7 83 3-87 14-97 (109)
121 2div_A TRNA selenocysteine ass 99.7 1E-17 3.4E-22 139.2 9.6 83 103-185 7-95 (99)
122 2cqp_A RNA-binding protein 12; 99.7 7.9E-18 2.7E-22 139.5 9.0 84 102-185 12-96 (98)
123 1wg5_A Heterogeneous nuclear r 99.7 7.4E-18 2.5E-22 141.8 8.9 81 3-84 13-95 (104)
124 2dis_A Unnamed protein product 99.7 1.3E-17 4.6E-22 140.8 10.5 85 2-86 5-95 (109)
125 2jrs_A RNA-binding protein 39; 99.7 1.2E-17 4E-22 141.8 10.1 82 3-84 24-107 (108)
126 2div_A TRNA selenocysteine ass 99.7 8.9E-18 3E-22 139.5 9.1 82 3-84 7-95 (99)
127 2d9p_A Polyadenylate-binding p 99.7 1E-17 3.6E-22 140.2 9.5 81 3-85 13-95 (103)
128 3ex7_B RNA-binding protein 8A; 99.7 8.8E-18 3E-22 145.8 9.3 86 102-187 19-105 (126)
129 1wez_A HnRNP H', FTP-3, hetero 99.7 7.9E-18 2.7E-22 141.5 8.7 83 102-186 12-94 (102)
130 2cpe_A RNA-binding protein EWS 99.7 9E-18 3.1E-22 143.0 9.1 83 3-85 13-105 (113)
131 1p1t_A Cleavage stimulation fa 99.7 4.1E-18 1.4E-22 142.7 6.8 87 2-88 5-93 (104)
132 3n9u_C Cleavage and polyadenyl 99.7 8.3E-18 2.8E-22 152.3 9.4 84 3-86 53-140 (156)
133 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-17 5.6E-22 139.4 10.5 83 3-86 13-100 (105)
134 2ywk_A Putative RNA-binding pr 99.7 1.5E-17 5E-22 137.0 10.0 80 2-82 13-94 (95)
135 2do0_A HnRNP M, heterogeneous 99.7 3E-17 1E-21 139.8 12.2 82 3-85 13-96 (114)
136 2mss_A Protein (musashi1); RNA 99.7 5.6E-18 1.9E-22 133.4 7.1 74 7-80 1-75 (75)
137 3ucg_A Polyadenylate-binding p 99.7 1.7E-17 5.9E-22 134.8 10.1 81 104-185 5-86 (89)
138 1x4a_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 138.4 12.4 83 102-187 19-102 (109)
139 2do0_A HnRNP M, heterogeneous 99.7 8.1E-17 2.8E-21 137.1 14.7 83 103-186 13-96 (114)
140 1x4c_A Splicing factor, argini 99.7 3.7E-17 1.3E-21 138.4 12.4 83 102-191 12-100 (108)
141 4a8x_A RNA-binding protein wit 99.7 1.2E-17 4.1E-22 135.3 8.9 82 104-185 3-86 (88)
142 1x4b_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 142.6 9.7 82 4-85 26-108 (116)
143 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-17 5E-22 146.9 10.0 84 3-86 40-125 (139)
144 2cq4_A RNA binding motif prote 99.7 3.6E-18 1.2E-22 145.8 5.8 84 3-86 23-107 (114)
145 1wg5_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 138.6 10.9 85 102-187 12-97 (104)
146 2la6_A RNA-binding protein FUS 99.7 2.2E-17 7.5E-22 137.3 10.5 82 101-182 9-99 (99)
147 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.4E-17 8.3E-22 137.9 10.8 81 3-85 13-95 (103)
148 2kxn_B Transformer-2 protein h 99.7 1E-17 3.5E-22 146.8 8.7 82 3-84 44-127 (129)
149 2khc_A Testis-specific RNP-typ 99.7 1.9E-17 6.4E-22 142.1 10.2 81 102-182 37-118 (118)
150 2ywk_A Putative RNA-binding pr 99.7 2.2E-17 7.4E-22 135.9 10.2 81 102-183 13-94 (95)
151 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-17 5.1E-22 140.9 9.4 82 3-84 24-107 (110)
152 2fy1_A RNA-binding motif prote 99.7 2.1E-17 7.1E-22 142.0 10.5 83 3-86 5-89 (116)
153 2dgw_A Probable RNA-binding pr 99.7 2.1E-17 7.1E-22 135.2 9.9 80 3-84 8-88 (91)
154 2cq3_A RNA-binding protein 9; 99.7 3.2E-17 1.1E-21 137.2 11.2 83 2-86 12-96 (103)
155 3ns6_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 142.9 5.2 82 104-185 5-94 (100)
156 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-17 9.2E-22 136.3 10.5 81 103-186 7-92 (96)
157 2dhg_A TRNA selenocysteine ass 99.7 1.5E-17 5.2E-22 139.3 9.0 82 3-85 7-92 (104)
158 2hgl_A HNRPF protein, heteroge 99.7 9.1E-18 3.1E-22 148.6 8.0 85 3-88 42-130 (136)
159 2cqp_A RNA-binding protein 12; 99.7 8.1E-18 2.8E-22 139.5 7.1 81 3-83 13-95 (98)
160 2ek1_A RNA-binding protein 12; 99.7 7.3E-18 2.5E-22 138.8 6.8 79 4-82 14-94 (95)
161 2dgw_A Probable RNA-binding pr 99.7 3.8E-17 1.3E-21 133.6 11.1 81 103-186 8-89 (91)
162 4a8x_A RNA-binding protein wit 99.7 1.6E-17 5.5E-22 134.5 8.7 82 3-84 2-86 (88)
163 2la6_A RNA-binding protein FUS 99.7 2.9E-17 9.8E-22 136.6 10.3 79 3-81 11-99 (99)
164 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-17 5.1E-22 140.4 8.7 81 103-189 14-97 (105)
165 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-17 9.5E-22 148.2 11.0 82 3-84 37-120 (156)
166 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.6E-22 140.2 8.6 79 2-86 13-95 (105)
167 2khc_A Testis-specific RNP-typ 99.7 1E-17 3.5E-22 143.8 7.4 79 3-81 38-118 (118)
168 2dha_A FLJ20171 protein; RRM d 99.7 8E-18 2.7E-22 146.4 6.9 86 3-89 21-111 (123)
169 3ulh_A THO complex subunit 4; 99.7 4.2E-17 1.4E-21 137.3 11.1 81 101-182 25-106 (107)
170 2dgv_A HnRNP M, heterogeneous 99.7 3.8E-17 1.3E-21 133.7 10.4 83 103-187 6-89 (92)
171 2fc8_A NCL protein; structure 99.7 6.1E-17 2.1E-21 135.1 11.9 83 102-187 12-95 (102)
172 2cpi_A CCR4-NOT transcription 99.7 3.9E-17 1.3E-21 139.0 10.8 84 103-186 13-103 (111)
173 2ek1_A RNA-binding protein 12; 99.7 9.6E-18 3.3E-22 138.1 6.6 81 103-183 13-94 (95)
174 3ex7_B RNA-binding protein 8A; 99.7 2.1E-17 7.1E-22 143.5 9.0 83 3-85 20-104 (126)
175 2dgv_A HnRNP M, heterogeneous 99.7 3.3E-17 1.1E-21 134.0 9.7 82 2-85 5-88 (92)
176 2m2b_A RNA-binding protein 10; 99.7 9E-18 3.1E-22 147.2 6.7 82 3-85 21-110 (131)
177 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.7E-22 139.4 7.6 84 103-186 6-90 (104)
178 3ulh_A THO complex subunit 4; 99.7 4.2E-17 1.4E-21 137.3 10.5 78 3-81 27-106 (107)
179 2cq1_A PTB-like protein L; RRM 99.7 8.7E-17 3E-21 135.0 12.3 81 103-189 13-96 (101)
180 2m2b_A RNA-binding protein 10; 99.7 1E-17 3.4E-22 146.9 6.6 85 102-187 20-111 (131)
181 3n9u_C Cleavage and polyadenyl 99.7 3E-17 1E-21 148.6 9.9 82 104-185 54-138 (156)
182 2dgx_A KIAA0430 protein; RRM d 99.7 3.8E-17 1.3E-21 135.3 9.6 79 3-84 7-91 (96)
183 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.9E-18 3.4E-22 132.4 5.8 74 6-80 1-76 (77)
184 1wel_A RNA-binding protein 12; 99.7 4.7E-18 1.6E-22 147.5 4.2 84 3-86 23-107 (124)
185 1x4e_A RNA binding motif, sing 99.7 9.7E-18 3.3E-22 135.3 5.6 79 3-81 3-83 (85)
186 2lmi_A GRSF-1, G-rich sequence 99.7 8.8E-18 3E-22 142.1 5.5 86 3-89 9-98 (107)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-17 4E-22 139.5 6.1 81 3-84 17-99 (100)
188 1iqt_A AUF1, heterogeneous nuc 99.7 1E-17 3.5E-22 131.8 5.3 74 7-80 1-75 (75)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-17 4E-22 132.0 5.6 76 106-181 1-76 (77)
190 2cpy_A RNA-binding protein 12; 99.7 2.2E-17 7.6E-22 141.2 7.8 84 102-186 12-96 (114)
191 2hgn_A Heterogeneous nuclear r 99.7 5.3E-18 1.8E-22 150.6 3.9 82 103-186 44-125 (139)
192 2cq4_A RNA binding motif prote 99.7 1.4E-17 4.9E-22 142.0 6.4 83 103-186 23-106 (114)
193 2fc9_A NCL protein; structure 99.7 1E-16 3.5E-21 133.6 11.3 81 102-186 12-93 (101)
194 2jwn_A Embryonic polyadenylate 99.7 8.9E-17 3.1E-21 139.0 11.4 82 104-186 35-117 (124)
195 2jwn_A Embryonic polyadenylate 99.7 2.3E-17 7.9E-22 142.7 7.6 81 4-84 35-116 (124)
196 1s79_A Lupus LA protein; RRM, 99.7 4.1E-17 1.4E-21 137.4 8.8 80 103-183 9-88 (103)
197 2dnn_A RNA-binding protein 12; 99.7 3E-17 1E-21 139.8 8.0 81 103-185 14-94 (109)
198 2cpx_A Hypothetical protein FL 99.7 2.2E-17 7.6E-22 140.9 7.1 87 102-188 22-109 (115)
199 2dis_A Unnamed protein product 99.7 7.2E-17 2.5E-21 136.3 10.2 85 103-187 6-95 (109)
200 2dgu_A Heterogeneous nuclear r 99.7 2E-16 7E-21 132.5 12.9 80 102-189 8-88 (103)
201 1x4a_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 136.5 10.2 80 3-85 20-101 (109)
202 2mss_A Protein (musashi1); RNA 99.7 1.8E-17 6.1E-22 130.5 5.8 75 107-181 1-75 (75)
203 2kt5_A RNA and export factor-b 99.7 1.6E-16 5.4E-21 137.7 12.1 87 101-188 31-118 (124)
204 2hgm_A HNRPF protein, heteroge 99.7 1.8E-17 6E-22 144.8 5.9 80 3-84 40-122 (126)
205 2lea_A Serine/arginine-rich sp 99.7 2.8E-17 9.5E-22 145.1 7.1 83 3-85 45-129 (135)
206 2kt5_A RNA and export factor-b 99.7 1E-16 3.5E-21 138.8 10.6 82 3-85 33-116 (124)
207 2dnq_A RNA-binding protein 4B; 99.7 1.5E-16 5.1E-21 129.9 10.9 77 103-187 6-83 (90)
208 1x5o_A RNA binding motif, sing 99.7 1.6E-16 5.4E-21 135.4 11.5 81 103-184 23-112 (114)
209 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.3E-22 134.1 4.9 80 103-182 3-83 (85)
210 2ad9_A Polypyrimidine tract-bi 99.7 9E-17 3.1E-21 138.8 9.9 80 103-188 29-111 (119)
211 3q2s_C Cleavage and polyadenyl 99.7 3.7E-17 1.3E-21 157.2 8.3 81 4-84 67-151 (229)
212 1wex_A Hypothetical protein (r 99.7 1.7E-16 5.9E-21 133.9 11.4 79 103-187 13-94 (104)
213 1x5o_A RNA binding motif, sing 99.7 1.1E-16 3.7E-21 136.5 10.1 80 3-83 23-112 (114)
214 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-17 8.4E-22 137.6 5.8 82 102-185 16-99 (100)
215 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.3E-22 130.7 4.3 75 107-181 1-75 (75)
216 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.2E-22 136.1 3.7 80 6-86 2-83 (90)
217 2cpi_A CCR4-NOT transcription 99.7 5E-17 1.7E-21 138.4 7.5 81 4-84 14-102 (111)
218 3r27_A HnRNP L, heterogeneous 99.7 1.8E-16 6.1E-21 132.6 10.3 77 103-185 19-98 (100)
219 2ki2_A SS-DNA binding protein 99.7 1.7E-17 5.7E-22 135.4 3.9 81 106-187 2-83 (90)
220 2kn4_A Immunoglobulin G-bindin 99.7 1E-16 3.4E-21 144.5 9.2 81 4-84 69-151 (158)
221 2hgm_A HNRPF protein, heteroge 99.7 2.4E-17 8.2E-22 143.9 4.8 81 103-185 40-122 (126)
222 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.9E-21 137.5 9.6 78 3-86 29-110 (119)
223 2xs2_A Deleted in azoospermia- 99.7 3.5E-17 1.2E-21 136.7 5.6 82 3-85 7-88 (102)
224 2db1_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 140.5 6.2 82 103-185 15-99 (118)
225 2hgl_A HNRPF protein, heteroge 99.7 3.8E-17 1.3E-21 144.6 6.0 81 103-185 42-126 (136)
226 2cq1_A PTB-like protein L; RRM 99.7 1.6E-16 5.3E-21 133.5 9.5 77 3-85 13-93 (101)
227 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.5E-21 140.4 9.4 78 3-80 61-140 (140)
228 2err_A Ataxin-2-binding protei 99.7 1.1E-16 3.7E-21 135.9 8.5 82 102-185 26-108 (109)
229 2fc9_A NCL protein; structure 99.7 1.1E-16 3.8E-21 133.4 8.4 80 2-85 12-93 (101)
230 2hgn_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 147.0 4.0 81 3-85 44-125 (139)
231 1wex_A Hypothetical protein (r 99.7 1.8E-16 6.2E-21 133.8 9.7 78 3-86 13-94 (104)
232 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-16 7.6E-21 138.9 10.7 80 102-181 60-140 (140)
233 1why_A Hypothetical protein ri 99.7 3.2E-16 1.1E-20 129.7 10.9 78 103-186 15-95 (97)
234 2fc8_A NCL protein; structure 99.7 1.4E-16 4.7E-21 133.0 8.7 80 3-85 13-94 (102)
235 2dgt_A RNA-binding protein 30; 99.7 3.8E-16 1.3E-20 128.0 11.2 78 102-187 7-85 (92)
236 1x4d_A Matrin 3; structural ge 99.7 2.6E-16 8.9E-21 132.3 10.3 78 103-186 13-94 (102)
237 2err_A Ataxin-2-binding protei 99.7 1.3E-16 4.6E-21 135.3 8.6 80 2-83 26-107 (109)
238 1fj7_A Nucleolin RBD1, protein 99.7 2.6E-17 9E-22 137.2 4.1 84 103-188 15-99 (101)
239 1x4c_A Splicing factor, argini 99.7 2.7E-16 9.1E-21 133.1 10.3 76 3-85 13-95 (108)
240 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-16 4.7E-21 129.5 8.1 72 4-81 6-79 (89)
241 2dnq_A RNA-binding protein 4B; 99.7 2.6E-16 9E-21 128.4 9.9 76 2-85 5-82 (90)
242 1wel_A RNA-binding protein 12; 99.7 3E-17 1E-21 142.5 4.4 82 103-185 23-105 (124)
243 1fj7_A Nucleolin RBD1, protein 99.7 1.7E-17 5.8E-22 138.4 2.5 82 3-85 15-97 (101)
244 2cpd_A Apobec-1 stimulating pr 99.7 6.9E-16 2.3E-20 128.2 12.3 78 102-187 12-92 (99)
245 2dnp_A RNA-binding protein 14; 99.7 4.2E-16 1.4E-20 127.2 10.9 78 103-188 7-85 (90)
246 2e5g_A U6 snRNA-specific termi 99.7 4.2E-16 1.4E-20 128.3 10.5 81 103-189 6-87 (94)
247 1x4g_A Nucleolysin TIAR; struc 99.7 4.1E-16 1.4E-20 132.0 10.6 79 103-187 23-102 (109)
248 3r27_A HnRNP L, heterogeneous 99.7 4.8E-16 1.7E-20 130.0 10.8 76 3-84 19-98 (100)
249 2dha_A FLJ20171 protein; RRM d 99.7 4.5E-17 1.6E-21 141.6 4.5 82 104-186 22-107 (123)
250 2lcw_A RNA-binding protein FUS 99.5 9E-18 3.1E-22 143.8 0.0 85 103-187 5-98 (116)
251 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.1E-16 1.1E-20 142.8 10.2 84 3-86 70-155 (165)
252 2cpj_A Non-POU domain-containi 99.7 3.6E-16 1.2E-20 129.9 9.8 78 103-186 13-91 (99)
253 2xs2_A Deleted in azoospermia- 99.6 1.2E-16 4.1E-21 133.5 6.7 83 103-187 7-89 (102)
254 1x4d_A Matrin 3; structural ge 99.6 1.8E-16 6.3E-21 133.3 7.8 76 3-84 13-93 (102)
255 2dgu_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 130.1 10.3 77 3-87 9-87 (103)
256 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.6E-22 143.4 0.0 85 2-86 4-98 (116)
257 2hvz_A Splicing factor, argini 99.6 2.4E-16 8.3E-21 131.3 8.3 77 106-187 1-78 (101)
258 2e5j_A Methenyltetrahydrofolat 99.6 3.7E-16 1.3E-20 129.5 9.2 79 103-186 17-96 (97)
259 2nlw_A Eukaryotic translation 99.6 2.4E-16 8.2E-21 132.8 8.1 79 4-84 14-101 (105)
260 1why_A Hypothetical protein ri 99.6 4.2E-16 1.4E-20 129.0 9.3 76 3-84 15-94 (97)
261 2nlw_A Eukaryotic translation 99.6 3.4E-16 1.1E-20 131.8 8.7 82 103-186 13-102 (105)
262 1wf1_A RNA-binding protein RAL 99.6 6.3E-16 2.2E-20 131.0 10.2 75 104-186 26-102 (110)
263 2ytc_A PRE-mRNA-splicing facto 99.6 8.8E-16 3E-20 123.6 10.6 75 102-182 9-85 (85)
264 2jvo_A Nucleolar protein 3; nu 99.6 3.5E-16 1.2E-20 132.7 8.6 79 101-187 27-106 (108)
265 1fjc_A Nucleolin RBD2, protein 99.6 4.6E-16 1.6E-20 128.3 9.0 80 103-187 14-94 (96)
266 3d2w_A TAR DNA-binding protein 99.6 3.3E-16 1.1E-20 128.1 8.1 78 3-85 9-86 (89)
267 2la4_A Nuclear and cytoplasmic 99.6 3.6E-16 1.2E-20 130.3 8.4 75 3-83 25-101 (101)
268 1x4g_A Nucleolysin TIAR; struc 99.6 5.7E-16 2E-20 131.0 9.8 77 3-85 23-101 (109)
269 2wbr_A GW182, gawky, LD47780P; 99.6 3.5E-16 1.2E-20 127.1 7.9 74 104-183 6-80 (89)
270 2jvr_A Nucleolar protein 3; RN 99.6 2.5E-16 8.7E-21 134.4 7.4 79 103-185 26-106 (111)
271 2cpj_A Non-POU domain-containi 99.6 4E-16 1.4E-20 129.6 8.2 77 3-85 13-91 (99)
272 2krb_A Eukaryotic translation 99.6 2.6E-16 9E-21 125.9 6.8 71 5-77 1-80 (81)
273 2lmi_A GRSF-1, G-rich sequence 99.6 6.1E-17 2.1E-21 136.9 3.1 82 103-185 9-93 (107)
274 2a3j_A U1 small nuclear ribonu 99.6 7.9E-16 2.7E-20 134.5 9.9 81 103-186 27-112 (127)
275 2e44_A Insulin-like growth fac 99.6 8.1E-16 2.8E-20 126.8 9.5 81 102-186 12-94 (96)
276 2cpx_A Hypothetical protein FL 99.6 8.8E-17 3E-21 137.1 3.8 83 3-85 23-107 (115)
277 2dgt_A RNA-binding protein 30; 99.6 9.1E-16 3.1E-20 125.7 9.7 76 2-85 7-84 (92)
278 3beg_B Splicing factor, argini 99.6 4.1E-16 1.4E-20 133.6 7.8 79 103-188 14-98 (115)
279 2e5j_A Methenyltetrahydrofolat 99.6 6.3E-16 2.1E-20 128.0 8.6 77 3-84 17-95 (97)
280 2dnl_A Cytoplasmic polyadenyla 99.6 7.1E-16 2.4E-20 131.8 9.2 80 3-83 6-88 (114)
281 3d2w_A TAR DNA-binding protein 99.6 4E-16 1.4E-20 127.6 7.3 78 103-186 9-86 (89)
282 1x4f_A Matrin 3; structural ge 99.6 5.6E-16 1.9E-20 132.4 8.5 80 102-187 22-105 (112)
283 2e5g_A U6 snRNA-specific termi 99.6 8.2E-16 2.8E-20 126.6 9.2 78 3-85 6-84 (94)
284 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 140.8 11.5 86 102-187 10-95 (196)
285 2cqh_A IGF-II mRNA-binding pro 99.6 6.1E-16 2.1E-20 126.9 8.2 79 103-188 6-87 (93)
286 1wf0_A TDP-43, TAR DNA-binding 99.6 2.7E-16 9.3E-21 127.8 6.0 78 3-85 3-80 (88)
287 2a3j_A U1 small nuclear ribonu 99.6 8.1E-16 2.8E-20 134.5 9.4 83 3-88 27-115 (127)
288 2jvr_A Nucleolar protein 3; RN 99.6 5.2E-16 1.8E-20 132.5 7.9 77 3-83 26-105 (111)
289 1x4f_A Matrin 3; structural ge 99.6 4.7E-16 1.6E-20 132.9 7.4 77 3-85 23-104 (112)
290 4f02_A Polyadenylate-binding p 99.6 1.3E-15 4.6E-20 144.0 11.2 83 103-185 13-96 (213)
291 2ytc_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.8E-20 123.0 9.0 74 2-81 9-85 (85)
292 2la4_A Nuclear and cytoplasmic 99.6 5.5E-16 1.9E-20 129.1 7.4 76 103-184 25-101 (101)
293 1x5p_A Negative elongation fac 99.6 4.3E-15 1.5E-19 123.0 12.6 77 103-187 13-90 (97)
294 2f3j_A RNA and export factor b 99.6 8.1E-16 2.8E-20 142.0 9.0 81 4-85 87-169 (177)
295 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.9E-20 128.9 9.8 76 2-85 28-105 (108)
296 1nu4_A U1A RNA binding domain; 99.6 6.1E-16 2.1E-20 127.7 7.3 81 3-86 6-92 (97)
297 2dnp_A RNA-binding protein 14; 99.6 1.2E-15 4E-20 124.5 8.8 75 2-84 6-82 (90)
298 1wf0_A TDP-43, TAR DNA-binding 99.6 4.2E-16 1.4E-20 126.6 5.9 79 103-187 3-81 (88)
299 2xnq_A Nuclear polyadenylated 99.6 2.4E-15 8.3E-20 124.9 10.4 75 103-185 20-96 (97)
300 1wg1_A KIAA1579 protein, homol 99.6 1.1E-15 3.7E-20 124.4 8.2 75 3-84 3-79 (88)
301 2cpd_A Apobec-1 stimulating pr 99.6 2.8E-15 9.4E-20 124.5 10.5 75 3-85 13-91 (99)
302 2kvi_A Nuclear polyadenylated 99.6 6.4E-16 2.2E-20 127.8 6.5 76 103-186 8-85 (96)
303 1whx_A Hypothetical protein ri 99.6 8.4E-16 2.9E-20 130.9 7.4 76 2-83 7-84 (111)
304 2e44_A Insulin-like growth fac 99.6 9.2E-16 3.2E-20 126.5 7.4 77 4-84 14-93 (96)
305 1fjc_A Nucleolin RBD2, protein 99.6 5.4E-16 1.9E-20 127.9 5.8 78 2-84 13-92 (96)
306 1nu4_A U1A RNA binding domain; 99.6 7.7E-16 2.6E-20 127.1 6.8 81 103-186 6-91 (97)
307 2krb_A Eukaryotic translation 99.6 5E-16 1.7E-20 124.3 5.3 71 106-178 2-80 (81)
308 2f3j_A RNA and export factor b 99.6 1.6E-15 5.5E-20 140.0 9.5 84 102-186 85-169 (177)
309 2dnl_A Cytoplasmic polyadenyla 99.6 8.8E-16 3E-20 131.2 7.1 80 103-184 6-88 (114)
310 2cqh_A IGF-II mRNA-binding pro 99.6 9E-16 3.1E-20 125.9 6.8 76 3-85 6-85 (93)
311 2xnq_A Nuclear polyadenylated 99.6 3.7E-15 1.3E-19 123.7 10.4 73 3-83 20-95 (97)
312 3lqv_A PRE-mRNA branch site pr 99.6 1.8E-15 6E-20 129.1 8.2 81 103-186 6-87 (115)
313 2kvi_A Nuclear polyadenylated 99.6 1.6E-15 5.6E-20 125.3 7.7 76 3-86 8-86 (96)
314 1fxl_A Paraneoplastic encephal 99.6 4.5E-15 1.5E-19 133.1 11.2 82 105-186 2-84 (167)
315 3md3_A Nuclear and cytoplasmic 99.6 4.1E-15 1.4E-19 133.2 10.9 80 3-82 85-166 (166)
316 2voo_A Lupus LA protein; RNA-b 99.6 4.3E-15 1.5E-19 139.0 11.3 82 104-186 108-189 (193)
317 2cjk_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 137.6 7.0 80 4-83 86-166 (167)
318 1wf1_A RNA-binding protein RAL 99.6 2.4E-15 8.3E-20 127.4 8.4 73 4-84 26-101 (110)
319 1b7f_A Protein (SXL-lethal pro 99.6 3.8E-15 1.3E-19 134.0 10.2 84 104-187 2-86 (168)
320 1sjr_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 133.6 11.6 81 102-186 43-126 (164)
321 2qfj_A FBP-interacting repress 99.6 4.8E-15 1.6E-19 139.1 11.1 83 3-85 123-207 (216)
322 2i2y_A Fusion protein consists 99.6 2.6E-15 8.8E-20 134.3 8.7 77 3-84 71-149 (150)
323 3beg_B Splicing factor, argini 99.6 1.5E-15 5.2E-20 130.1 6.8 75 3-84 14-95 (115)
324 1whx_A Hypothetical protein ri 99.6 2.9E-15 9.9E-20 127.6 8.0 77 104-186 9-86 (111)
325 1wg1_A KIAA1579 protein, homol 99.6 3.1E-15 1.1E-19 121.7 7.7 75 104-185 4-79 (88)
326 2hzc_A Splicing factor U2AF 65 99.6 4.4E-15 1.5E-19 119.9 8.1 72 2-79 3-86 (87)
327 2yh0_A Splicing factor U2AF 65 99.6 6.3E-15 2.1E-19 136.4 9.9 83 3-85 112-196 (198)
328 2j8a_A Histone-lysine N-methyl 99.6 4.3E-15 1.5E-19 128.7 7.8 80 6-85 3-98 (136)
329 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-14 4.7E-19 126.8 11.0 79 103-186 26-108 (130)
330 2cq2_A Hypothetical protein LO 99.6 6.6E-15 2.2E-19 126.0 8.5 78 103-186 23-108 (114)
331 2g4b_A Splicing factor U2AF 65 99.6 7.9E-15 2.7E-19 132.6 9.6 78 4-81 93-172 (172)
332 1x5p_A Negative elongation fac 99.6 1.3E-14 4.5E-19 120.0 10.1 75 3-85 13-89 (97)
333 3egn_A RNA-binding protein 40; 99.6 1.3E-15 4.4E-20 135.2 4.2 83 3-85 43-132 (143)
334 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.2E-20 134.7 4.5 85 103-187 43-133 (143)
335 3pgw_S U1-70K; protein-RNA com 99.6 7.4E-15 2.5E-19 153.9 10.5 82 4-85 101-184 (437)
336 1sjr_A Polypyrimidine tract-bi 99.5 1.2E-14 4.3E-19 131.8 9.8 77 5-85 46-126 (164)
337 2e5i_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 123.7 11.7 78 103-186 23-104 (124)
338 2j8a_A Histone-lysine N-methyl 99.5 9E-15 3.1E-19 126.7 7.3 77 106-182 3-94 (136)
339 2bz2_A Negative elongation fac 99.5 1.1E-14 3.6E-19 126.2 7.8 77 102-186 36-113 (121)
340 2hzc_A Splicing factor U2AF 65 99.5 2E-14 6.8E-19 116.0 8.2 71 103-180 4-86 (87)
341 2voo_A Lupus LA protein; RNA-b 99.5 2E-14 6.8E-19 134.5 9.3 80 4-84 108-188 (193)
342 3zzy_A Polypyrimidine tract-bi 99.5 4E-14 1.4E-18 123.9 10.4 75 6-85 29-108 (130)
343 2pe8_A Splicing factor 45; RRM 99.5 5.3E-14 1.8E-18 118.8 10.2 82 103-184 6-94 (105)
344 2pe8_A Splicing factor 45; RRM 99.5 4.9E-14 1.7E-18 119.0 9.9 82 2-83 5-94 (105)
345 2cq2_A Hypothetical protein LO 99.5 1.7E-14 5.7E-19 123.5 7.0 75 3-83 23-106 (114)
346 3nmr_A Cugbp ELAV-like family 99.5 3.8E-14 1.3E-18 128.2 9.2 83 104-186 2-90 (175)
347 2e5i_A Heterogeneous nuclear r 99.5 9.2E-14 3.2E-18 120.8 10.8 73 7-85 27-104 (124)
348 2diu_A KIAA0430 protein; struc 99.5 3.8E-14 1.3E-18 116.3 7.7 73 104-186 7-86 (96)
349 3tyt_A Heterogeneous nuclear r 99.5 6.6E-14 2.2E-18 132.1 9.7 78 104-186 3-82 (205)
350 2bz2_A Negative elongation fac 99.5 6.6E-14 2.2E-18 121.1 8.8 76 3-86 37-114 (121)
351 2diu_A KIAA0430 protein; struc 99.5 9.2E-14 3.2E-18 114.0 8.6 73 4-86 7-87 (96)
352 2dit_A HIV TAT specific factor 99.5 2.9E-13 9.8E-18 115.2 11.7 83 102-188 12-106 (112)
353 1fje_B Nucleolin RBD12, protei 99.5 8.8E-14 3E-18 126.4 8.7 76 3-83 97-174 (175)
354 3u1l_A PRE-mRNA-splicing facto 99.5 1.4E-13 4.9E-18 132.6 9.4 78 2-85 131-231 (240)
355 3pgw_A U1-A; protein-RNA compl 99.4 2.3E-13 8E-18 133.4 10.9 81 103-186 7-92 (282)
356 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.7E-12 5.8E-17 108.5 11.8 68 115-188 27-94 (100)
357 2adc_A Polypyrimidine tract-bi 99.4 4E-13 1.4E-17 128.3 9.0 78 103-185 32-111 (229)
358 3u1l_A PRE-mRNA-splicing facto 99.4 2.7E-13 9.2E-18 130.6 7.8 78 103-186 132-231 (240)
359 2dit_A HIV TAT specific factor 99.4 7.7E-13 2.6E-17 112.5 9.5 79 3-85 13-104 (112)
360 3v4m_A Splicing factor U2AF 65 99.4 7E-13 2.4E-17 111.9 7.7 81 104-184 4-97 (105)
361 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.8E-12 9.6E-17 107.2 10.4 77 3-84 8-91 (100)
362 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 110.4 7.8 82 3-84 3-98 (105)
363 3sde_A Paraspeckle component 1 99.3 1.9E-12 6.6E-17 126.1 9.7 82 3-85 94-181 (261)
364 1qm9_A Polypyrimidine tract-bi 99.3 1.5E-12 5E-17 120.9 8.4 75 4-83 119-197 (198)
365 1jmt_A Splicing factor U2AF 35 99.3 5.1E-13 1.8E-17 112.5 4.5 71 110-181 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.3 2.8E-12 9.7E-17 110.4 8.6 80 104-183 19-108 (118)
367 1jmt_A Splicing factor U2AF 35 99.3 8.9E-13 3E-17 111.0 4.9 70 10-80 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.3 4.5E-12 1.5E-16 109.2 8.8 80 4-83 19-109 (118)
369 3tht_A Alkylated DNA repair pr 99.1 7.7E-11 2.6E-15 119.3 9.4 75 102-182 15-97 (345)
370 3tht_A Alkylated DNA repair pr 99.1 1E-10 3.6E-15 118.3 10.2 74 2-81 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.1 9.5E-11 3.3E-15 100.2 7.8 78 103-184 5-93 (114)
372 3s6e_A RNA-binding protein 39; 99.1 3.3E-10 1.1E-14 96.8 9.3 80 4-87 6-97 (114)
373 1owx_A Lupus LA protein, SS-B, 99.0 1.8E-09 6E-14 93.0 8.9 78 99-182 12-94 (121)
374 1owx_A Lupus LA protein, SS-B, 98.9 1.3E-09 4.3E-14 93.9 7.2 76 4-85 17-98 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 2.8E-09 9.6E-14 86.6 7.5 71 105-184 7-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 1.5E-08 5.3E-13 82.2 7.9 74 4-85 6-88 (91)
377 3dxb_A Thioredoxin N-terminall 98.7 3.7E-08 1.3E-12 93.2 10.9 68 116-183 140-212 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 1.2E-08 4E-13 83.4 4.4 71 104-183 14-94 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 4.6E-08 1.6E-12 79.8 5.8 71 4-82 14-94 (95)
380 2dhx_A Poly (ADP-ribose) polym 98.6 3.5E-07 1.2E-11 75.6 10.8 88 3-118 6-99 (104)
381 3dxb_A Thioredoxin N-terminall 98.6 8.5E-08 2.9E-12 90.7 8.2 67 17-83 141-213 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5E-07 1.7E-11 75.3 8.3 74 3-82 19-99 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.2 4.7E-06 1.6E-10 69.5 8.4 71 104-180 20-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.2 1E-05 3.6E-10 66.8 9.9 75 104-186 7-86 (104)
385 1wey_A Calcipressin 1; structu 97.3 0.00064 2.2E-08 56.3 7.8 73 5-83 5-84 (104)
386 1wey_A Calcipressin 1; structu 97.2 0.0009 3.1E-08 55.4 7.1 75 105-185 5-85 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.1 0.0018 6.3E-08 54.9 8.8 75 4-85 23-99 (119)
388 1uw4_A UPF3X; nonsense mediate 97.1 0.0013 4.3E-08 53.4 7.4 65 6-70 2-70 (91)
389 1whv_A Poly(A)-specific ribonu 97.1 0.00082 2.8E-08 54.9 5.8 52 4-64 15-66 (100)
390 1whv_A Poly(A)-specific ribonu 97.1 0.0008 2.7E-08 54.9 5.6 56 103-167 14-69 (100)
391 1wwh_A Nucleoporin 35, nucleop 96.9 0.0029 1E-07 53.7 8.2 74 103-183 22-96 (119)
392 1uw4_A UPF3X; nonsense mediate 96.8 0.0035 1.2E-07 50.8 7.5 63 106-168 2-66 (91)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0011 3.8E-08 54.2 3.6 50 6-64 7-56 (101)
394 3p3d_A Nucleoporin 53; structu 96.6 0.0019 6.5E-08 55.6 4.8 86 1-87 3-103 (132)
395 3ctr_A Poly(A)-specific ribonu 96.1 0.0049 1.7E-07 50.4 4.4 54 105-167 6-59 (101)
396 3pq1_A Poly(A) RNA polymerase; 95.6 0.0029 1E-07 66.0 1.3 55 4-64 52-106 (464)
397 3pq1_A Poly(A) RNA polymerase; 95.6 0.0039 1.3E-07 65.1 2.2 58 104-167 52-109 (464)
398 2l08_A Regulator of nonsense t 95.6 0.0076 2.6E-07 49.3 3.4 66 4-69 8-77 (97)
399 2l08_A Regulator of nonsense t 95.3 0.015 5.1E-07 47.5 4.1 65 104-168 8-74 (97)
400 3p3d_A Nucleoporin 53; structu 94.0 0.038 1.3E-06 47.6 3.6 78 105-183 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 86.2 1.3 4.5E-05 46.7 7.4 57 103-168 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 85.1 1.6 5.6E-05 45.9 7.5 51 5-64 440-490 (507)
403 2ew9_A Copper-transporting ATP 64.8 35 0.0012 28.0 9.2 134 1-168 1-142 (149)
404 4eyt_A Telomerase associated p 60.1 35 0.0012 27.1 7.4 72 104-183 11-90 (129)
405 4eyt_A Telomerase associated p 58.3 66 0.0023 25.5 8.7 54 3-64 10-63 (129)
406 4e8u_A Putative uncharacterize 50.6 25 0.00087 31.3 5.8 55 7-64 14-80 (172)
407 2cu1_A Mitogen-activated prote 45.7 72 0.0025 25.7 7.1 65 112-184 23-88 (103)
408 2g0c_A ATP-dependent RNA helic 43.5 51 0.0017 24.5 5.9 66 7-81 2-75 (76)
409 3fry_A Probable copper-exporti 40.8 45 0.0016 24.0 5.2 57 105-168 6-62 (73)
410 3ezj_A General secretion pathw 39.4 47 0.0016 30.7 6.2 114 13-129 9-133 (241)
411 1yjr_A Copper-transporting ATP 36.1 1.1E+02 0.0036 21.2 7.6 50 1-56 1-50 (75)
412 4e8u_A Putative uncharacterize 32.8 54 0.0018 29.2 5.0 56 107-165 14-81 (172)
413 3dxs_X Copper-transporting ATP 31.4 1.2E+02 0.004 21.5 6.1 58 106-169 4-65 (74)
414 2exu_A Transcription initiatio 30.2 89 0.003 28.5 6.1 29 146-174 148-176 (200)
415 3j21_T 50S ribosomal protein L 29.8 1E+02 0.0035 24.1 5.7 56 109-167 26-83 (86)
416 2lfv_A Protein DAMX; cell divi 35.9 11 0.00038 30.9 0.0 54 117-172 34-89 (106)
417 4hhu_A OR280; engineered prote 29.4 1E+02 0.0034 25.6 5.7 70 107-181 44-129 (170)
418 3lpe_A Putative transcription 29.0 96 0.0033 24.3 5.5 32 132-168 40-71 (92)
419 3fry_A Probable copper-exporti 28.5 89 0.003 22.3 5.0 54 4-64 5-58 (73)
420 2npt_B Mitogen-activated prote 28.3 81 0.0028 25.2 4.7 49 112-168 35-84 (100)
421 3bb5_A Stress responsive alpha 27.5 2.4E+02 0.0082 23.0 8.0 57 8-64 24-91 (121)
422 2kpo_A Rossmann 2X2 fold prote 27.4 51 0.0017 25.4 3.3 48 17-77 33-83 (110)
423 3lfj_A Manxb, phosphotransfera 26.1 69 0.0024 28.8 4.6 31 48-80 98-128 (187)
424 1tr0_A Stable protein 1; plant 24.0 2.3E+02 0.0078 22.3 7.1 58 7-64 11-81 (108)
425 2hiy_A Hypothetical protein; C 23.5 1.7E+02 0.0057 26.0 6.7 127 6-155 7-144 (183)
426 2jrh_A Mitogen-activated prote 23.2 1E+02 0.0035 24.3 4.4 64 112-183 19-83 (94)
427 2kpo_A Rossmann 2X2 fold prote 22.6 1.2E+02 0.0042 23.3 4.7 50 117-178 33-83 (110)
428 4a4j_A Pacszia, cation-transpo 21.9 2E+02 0.0068 19.7 6.7 57 106-168 4-63 (69)
429 2qyc_A Ferredoxin-like protein 21.2 2.7E+02 0.0092 21.6 7.0 52 12-64 12-73 (103)
430 2c60_A Human mitogen-activated 21.1 85 0.0029 25.4 3.6 60 112-179 46-106 (111)
431 2g0c_A ATP-dependent RNA helic 21.0 70 0.0024 23.7 3.1 58 116-182 12-75 (76)
432 3mfb_A Uncharacterized protein 20.5 1.3E+02 0.0044 26.3 5.1 37 117-153 3-42 (157)
433 1q4r_A Protein AT3G17210; cent 20.0 2.5E+02 0.0085 22.3 6.6 59 6-64 12-81 (112)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-36 Score=280.18 Aligned_cols=177 Identities=38% Similarity=0.738 Sum_probs=153.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.++.|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 56899999999999999999999999999999999999999999999999999999999999 88889999999999988
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
++...... ......++|||.|||+++|+++|+++|++||.|+.|+|++|+.+++++|||||+|+++++|+
T Consensus 91 ~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 91 SREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp C---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 76443211 12235679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCCCCC
Q 011796 162 RVLHKTFHELNGKMVEVKRAVPKEFSPG 189 (477)
Q Consensus 162 ~Al~~~~~~l~Gr~l~V~~a~~k~~~~~ 189 (477)
+||+++.+.|+|++|+|++|.+++....
T Consensus 161 ~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHCSCCEETTEECEEEECC-------
T ss_pred HHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 9999866999999999999998886543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=8.7e-36 Score=270.36 Aligned_cols=167 Identities=47% Similarity=0.964 Sum_probs=155.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~ 82 (477)
++.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+.+.+.|+++.|.|.++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999778899999999999887
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~ 162 (477)
+.... ..++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++
T Consensus 81 ~~~~~----------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQD----------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHHH----------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhcc----------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 65432 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCeEEEEEEcCCCC
Q 011796 163 VLHKTFHELNGKMVEVKRAVPKE 185 (477)
Q Consensus 163 Al~~~~~~l~Gr~l~V~~a~~k~ 185 (477)
|++.....|++++|+|++|.|++
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCCC
Confidence 99843389999999999999874
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.5e-35 Score=277.93 Aligned_cols=168 Identities=28% Similarity=0.467 Sum_probs=153.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|| ++...+.++.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 8899999999999998
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
......... ..++|||.|||+++|+++|+++|++||.|++|+|++|+. .+||||||+|+++++|
T Consensus 93 ~~~~~~~~~--------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 93 QRDPSLRKS--------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCCTHHHHH--------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHH
T ss_pred ccccccccc--------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHH
Confidence 776544322 346899999999999999999999999999999999864 4799999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
++||++++ ++|+|++|+|++|++++.
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 99999888 999999999999987653
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8.4e-35 Score=274.77 Aligned_cols=180 Identities=21% Similarity=0.475 Sum_probs=156.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++...|.+++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 5689999999999999999999999999999999999989999999999999999999999 89999999999999887
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
............ .......++|||.|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|++.++|+
T Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 765432211000 001134679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k~~~~ 188 (477)
+|++.++ +.|++++|+|.++.++....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999888 89999999999999876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-34 Score=256.11 Aligned_cols=163 Identities=23% Similarity=0.464 Sum_probs=150.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
|+|||+|||+++||++|+++|++||+|++|+|++++. ++++|||||+|.++++|++|+ ++...|.+++|.|+++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999985 789999999999999999999 8999999999999998765
Q ss_pred chhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 011796 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~A 163 (477)
... .....++|||.|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++|
T Consensus 80 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQS--------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCC--------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCC--------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 421 224577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCC
Q 011796 164 LHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 164 l~~~~-~~l~Gr~l~V~~a~~ 183 (477)
++.++ ..|++++|+|++|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 99888 899999999999863
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.5e-34 Score=257.94 Aligned_cols=162 Identities=23% Similarity=0.437 Sum_probs=152.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...|.+++|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999999999989999999999999999999999 89999999999999988
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
++... ...++|||.|||.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|+
T Consensus 82 ~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSST----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccc----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 65421 34678999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHhcC-CccCC--eEEEEEEc
Q 011796 162 RVLHKTF-HELNG--KMVEVKRA 181 (477)
Q Consensus 162 ~Al~~~~-~~l~G--r~l~V~~a 181 (477)
+|++.++ +.|++ ++|+|++|
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999888 88988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.6e-33 Score=254.56 Aligned_cols=161 Identities=27% Similarity=0.520 Sum_probs=150.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...|.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 689999999999999999999999999999999999989999999999999999999999 899999999999999987
Q ss_pred cchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 011796 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (477)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~ 162 (477)
.... ...++|||.|||+++++++|+++|++||.|++|+|++++.+++++|||||+|+++++|++
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 6432 245689999999999999999999999999999999999899999999999999999999
Q ss_pred HHHhcC-CccCCeE--EEEEEc
Q 011796 163 VLHKTF-HELNGKM--VEVKRA 181 (477)
Q Consensus 163 Al~~~~-~~l~Gr~--l~V~~a 181 (477)
|++.++ ..|.++. |+|++|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999888 8999975 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7e-33 Score=252.50 Aligned_cols=164 Identities=24% Similarity=0.432 Sum_probs=145.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHH--HcCCccC---CeEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATG--RARGFGFVVFADPAVAERVI--MDKHMID---GRTV 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg--~srG~aFVeF~~~e~A~kAl--~~~~~i~---Gr~l 75 (477)
++.++|||+|||+++||++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|+ ++...+. .+.|
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 478999999999999999999999999999999999999877 89999999999999999999 7776665 6777
Q ss_pred EEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeC
Q 011796 76 EAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155 (477)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~ 155 (477)
.+.++.+.... ....++|||.|||+++|+++|+++|++||.|++|+|++++. ++++|||||+|+
T Consensus 81 ~~~~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~ 144 (175)
T 3nmr_A 81 QMKPADSEKNN---------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFT 144 (175)
T ss_dssp EEEECGGGCCS---------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEES
T ss_pred EEccccccccc---------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEEC
Confidence 77776554321 23567899999999999999999999999999999999975 889999999999
Q ss_pred CHHHHHHHHHhcC-CccC---CeEEEEEEcC
Q 011796 156 SEEAVDRVLHKTF-HELN---GKMVEVKRAV 182 (477)
Q Consensus 156 s~e~a~~Al~~~~-~~l~---Gr~l~V~~a~ 182 (477)
++++|++|++.++ ..+. +++|+|++|.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999988 5555 4999999984
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.1e-33 Score=261.68 Aligned_cols=178 Identities=21% Similarity=0.420 Sum_probs=149.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCcc
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMI 70 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i 70 (477)
+.+++|||+|||+++||++|+++|++| + .|.++.+ ++++|||||+|.++++|++|| ++.+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 468999999999999999999999999 4 5555555 456899999999999999999 999999
Q ss_pred CCeEEEEeecCCcchhhhhccCCC----CCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCc
Q 011796 71 DGRTVEAKKAVPRDDQNMLNRNTS----SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRP 146 (477)
Q Consensus 71 ~Gr~l~V~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~ 146 (477)
.+++|.|+++.+............ ...........++|||.|||+++++++|+++|++||.|++|+|++++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999999877643221111110 1111222356789999999999999999999999999999999999989999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 011796 147 RGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 147 rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
+|||||+|+++++|++|++.++ ..|++++|+|++++++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999888 899999999999998764
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=6.8e-32 Score=245.83 Aligned_cols=158 Identities=21% Similarity=0.451 Sum_probs=143.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCcc
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMI 70 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i 70 (477)
++.++|||+|||+++||++|+++|++| | +|.++++.+ ++|||||+|.++++|++|+ ++.+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 478999999999999999999999999 6 677776653 4789999999999999999 999999
Q ss_pred CCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEE
Q 011796 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150 (477)
Q Consensus 71 ~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~a 150 (477)
.+++|.|+++.+... ....++|||.|||+++|+++|+++|++||+|+.|+|++++.+++++|||
T Consensus 76 ~g~~i~v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp TTEECEEECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred cCceeeecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999999998765432 1246789999999999999999999999999999999999899999999
Q ss_pred EEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 151 FITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 151 FVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
||+|+++++|++|++.++ +.|++++|+|++|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999888 89999999999974
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.8e-32 Score=250.92 Aligned_cols=163 Identities=22% Similarity=0.350 Sum_probs=145.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++|++|.. .++++..++++||||||+|.++++|++|+ ++.+.|.+++|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 57899999999999999999999999998877 44455567899999999999999999999 99999999999999998
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~ 161 (477)
++... .....++|||.|||+++|+++|+++|++||.|+.+ ..+++++|||||+|+++++|+
T Consensus 90 ~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 90 GRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHH
T ss_pred Ccccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHH
Confidence 76432 12367899999999999999999999999988766 556889999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 162 RVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 162 ~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
+|++.++ +.|+|++|+|++|.+|+
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHhCCCEECCeEEEEEecCCCC
Confidence 9999988 89999999999998863
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.6e-30 Score=256.63 Aligned_cols=170 Identities=14% Similarity=0.222 Sum_probs=156.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCC-CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTV-TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (477)
.++.... .....++|||.|||+++ |+++|+++|++||.|+.|+|++++ +++++|+|||+|+++++
T Consensus 173 ~~~~~~~-------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 173 DAGQLTP-------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CGGGCCT-------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHH
T ss_pred CCCCCCc-------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHH
Confidence 8754321 12356789999999995 999999999999999999999987 58899999999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 011796 160 VDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (477)
Q Consensus 160 a~~Al~~~~-~~l~Gr~l~V~~a~~k~~ 186 (477)
|++|++.++ +.|+|++|+|+++.+++.
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999888 899999999999998775
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.2e-30 Score=254.29 Aligned_cols=172 Identities=16% Similarity=0.297 Sum_probs=144.6
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lr----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
..+++|||+|||+++||++|+ ++|++||+|++|+|++ ++++||||||+|.++++|++|| +++..|.+++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 578999999999999999977 8999999999999986 5789999999999999999999 899999999999
Q ss_pred EeecCCcchhhhhccCCC--------------------------------------------------------------
Q 011796 77 AKKAVPRDDQNMLNRNTS-------------------------------------------------------------- 94 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 94 (477)
|+++..+...........
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999876543100000000
Q ss_pred ---------------------------------CCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecC
Q 011796 95 ---------------------------------SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141 (477)
Q Consensus 95 ---------------------------------~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~ 141 (477)
...........++|||.|||+++|+++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00000122356789999999999999999999999999999999664
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEEEcC
Q 011796 142 NTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAV 182 (477)
Q Consensus 142 ~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~-Gr~l~V~~a~ 182 (477)
+|||||+|++.++|++||+.++ ..|. +++|+|.+++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999998 8898 9999999986
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.5e-30 Score=258.00 Aligned_cols=171 Identities=14% Similarity=0.266 Sum_probs=145.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.++|||+|||+++++++|+++|++|| +|++|+|++++. ++++|||||+|.++++|++|+ ++.+.|.+++|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999886 889999999999999999999 8999999999999999
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCC-CCHHHHHHHhhhcCcEEEEEEEecCC-CCCcceEEEEEeCCHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEE 158 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~teedL~~~F~~~G~V~~v~i~~d~~-tg~~rG~aFVeF~s~e 158 (477)
.++...... .......++|||.|||+. +|+++|+++|++||.|+.|+|++++. |++++|||||+|.+++
T Consensus 195 ~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 195 NPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 876543321 112346789999999999 99999999999999999999999887 6899999999999999
Q ss_pred HHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 159 AVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 159 ~a~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
+|++|| .++ +.|.+++|+|.+|.+|+
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999 887 89999999999999874
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.8e-30 Score=246.14 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=140.3
Q ss_pred CCcEEEEcCCC-ccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGIS-WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP-~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+.++|||+||| +++|+++|+++|++||+|++|+|+++ .||||||+|.++++|++|+ ++++.|.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 67899999999 89999999999999999999999875 3799999999999999999 9999999999999998
Q ss_pred CCcchhhhh-----c------cC-CCCCC---------CCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcE--EEEEE
Q 011796 81 VPRDDQNML-----N------RN-TSSIH---------SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTI--TDVVV 137 (477)
Q Consensus 81 ~~~~~~~~~-----~------~~-~~~~~---------~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V--~~v~i 137 (477)
+.+...... . .. ..... ......+.++|||.|||+++||++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 654321000 0 00 00000 00012346789999999999999999999999999 89999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCe----EEEEEEc
Q 011796 138 MYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK----MVEVKRA 181 (477)
Q Consensus 138 ~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr----~l~V~~a 181 (477)
+.++ ++++|||||+|++.++|++||+.++ ++|.++ ++.|++|
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8875 4567999999999999999999999 888887 6788775
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1e-29 Score=244.09 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=143.7
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
.+.++|||+|||+ +++|++|+++|++||+|++|+|++++ ++||||+|.++++|++|+ ++...|.+++|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4689999999999 99999999999999999999999875 689999999999999999 899999999999999
Q ss_pred cCCcchhhhhccCC----------C---CCC------CCCCCCcccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEe
Q 011796 80 AVPRDDQNMLNRNT----------S---SIH------SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMY 139 (477)
Q Consensus 80 a~~~~~~~~~~~~~----------~---~~~------~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~ 139 (477)
+.++.......... . ... ........++|||.|||+++++++|+++|++|| .|+.|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87653211100000 0 000 001123468999999999999999999999999 999999975
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEEEcCCC
Q 011796 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAVPK 184 (477)
Q Consensus 140 d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~-Gr~l~V~~a~~k 184 (477)
+ .++||||+|++.++|++||+.++ ..|. +++|+|++++++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36799999999999999999888 8999 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=5.7e-30 Score=239.34 Aligned_cols=171 Identities=17% Similarity=0.244 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
++++|||+|||+ ++++++|+++|++||+|++|+|++++ +|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 579999999999 99999999999999999999999875 689999999999999999 8999999999999998
Q ss_pred CCcchhhhhccCC-------------------CCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEec
Q 011796 81 VPRDDQNMLNRNT-------------------SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYD 140 (477)
Q Consensus 81 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d 140 (477)
.++.......... ..........+.++|||.|||+++++++|+++|++|| .|++|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7653211110000 0000011123478999999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEEEcCCC
Q 011796 141 HNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAVPK 184 (477)
Q Consensus 141 ~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~-Gr~l~V~~a~~k 184 (477)
. +|+|||+|+++++|++|++.++ +.|. +++|+|.+++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 6899999999999999999888 8899 999999999864
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.4e-29 Score=249.24 Aligned_cols=160 Identities=13% Similarity=0.228 Sum_probs=138.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998753 5899999999999999999 9999999999999875
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (477)
..++|||+|||+++|+++|+++|++|| .|+.|+|++++. ++++|||||+|.++++
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKED 171 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHH
Confidence 256899999999999999999999999 999999999887 7789999999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 160 VDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 160 a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
|++|++.++ +.|++++|.|.++.++...
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999777 8999999999999877653
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=8.9e-29 Score=244.19 Aligned_cols=156 Identities=18% Similarity=0.395 Sum_probs=144.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.++++|||+|||+++|+++|+++|++|| |++|++ ++++|||||+|.++++|++|+ ++...|.+++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3679999999999999999999999999 999988 456889999999999999999 7999999999999874
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
. ..++|||+|||+++|+++|+++|++||.|+.|+|++++.+++++|||||+|.++++|
T Consensus 93 ~----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 93 P----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp C----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred C----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 3 235899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 161 DRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 161 ~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
++|++.++ ..|++++|.|.++.++...
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99998887 8999999999999876543
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.2e-29 Score=244.63 Aligned_cols=156 Identities=28% Similarity=0.455 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++ ++|||||+|.++++|++|+ ++.+.|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999999999999999999999999964 3689999999999999999 8999999999999998
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a 160 (477)
.+ .++|||.|||+.+|+++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHH
Confidence 63 358999999999999999999999999999999999 5789999999999999999
Q ss_pred HHHHHhcC--CccC---CeEEEEEEcCCCCCC
Q 011796 161 DRVLHKTF--HELN---GKMVEVKRAVPKEFS 187 (477)
Q Consensus 161 ~~Al~~~~--~~l~---Gr~l~V~~a~~k~~~ 187 (477)
++||+.++ ..+. +++|.|+++.+.+..
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 99999984 3444 999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.1e-23 Score=190.32 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=114.8
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcC-CccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceee
Q 011796 34 EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFV 110 (477)
Q Consensus 34 ~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~-~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 110 (477)
+++|+.+.. +++|||||+|.++++|++|+ ++. ..+++ .+.+........... ..............++|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE---GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCC-EEEEETTTTEEEEEC---CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCC-cccccCccccccccc---cccccccccCCCCCCEEEE
Confidence 577888764 69999999999999999999 333 23333 333333222211111 1111112223356789999
Q ss_pred cCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 111 ~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|++++++...
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999988 8999999999999977543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=6.9e-22 Score=177.31 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=114.1
Q ss_pred CCcccEEEEEeCCHHHHHHHH--H-cCCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHH
Q 011796 44 GRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120 (477)
Q Consensus 44 g~srG~aFVeF~~~e~A~kAl--~-~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee 120 (477)
.+.+|+++|+|.++++|++|+ + +...|++ +|.++++..+......................++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 468999999999999999999 6 8999999 99999887654432221222222223344567899999999999999
Q ss_pred HHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 011796 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (477)
Q Consensus 121 dL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~ 185 (477)
+|+++|++||.|++|+|+++ ++|||||+|.++++|++||+.++ +.|++++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999976 58899999999999999999877 89999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=6.6e-22 Score=169.90 Aligned_cols=108 Identities=21% Similarity=0.437 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++||++|+++|++||+|++|+|++++ .++||||||+|.++++|++|| ++.+.|++++|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46799999999999999999999999999999999986 458999999999999999999 89999999999999998
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHH
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teed 121 (477)
++........ .......+|||.|||+++|++.
T Consensus 82 ~~~~~~~~~~--------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG--------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Cccccccccc--------cccCCCCceEeCCCCCCccccc
Confidence 7654332111 1123455799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=153.07 Aligned_cols=79 Identities=28% Similarity=0.520 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|+ +++..|++++|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5689999999999999999999999999999999999999999999999999999999999 89999999999999997
Q ss_pred C
Q 011796 82 P 82 (477)
Q Consensus 82 ~ 82 (477)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=9.6e-21 Score=198.64 Aligned_cols=169 Identities=18% Similarity=0.279 Sum_probs=112.9
Q ss_pred HHHHHHhccCCeeEEEEee----cC-CCCCcccEE--EEEeCCHHHHHHHH--HcCCccCCeEEEEeecC-Ccchhhhhc
Q 011796 21 RLKEYFSRYGEVVEAVIMR----DR-ATGRARGFG--FVVFADPAVAERVI--MDKHMIDGRTVEAKKAV-PRDDQNMLN 90 (477)
Q Consensus 21 ~Lre~F~~~G~V~~v~i~~----d~-~tg~srG~a--FVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~-~~~~~~~~~ 90 (477)
.|.+||.++++|..|..+. ++ .+....+++ |++|.+++++..++ ++...+..+....+... .+.......
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3889999999998884432 22 122223333 88887766555444 11111111100000000 000000011
Q ss_pred cCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C
Q 011796 91 RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H 169 (477)
Q Consensus 91 ~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~ 169 (477)
...............++|||.|||+.||+++|+++|++||.|+.|+|+.++.+++++|||||+|.++++|++||+.++ +
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 111111112223456899999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred ccCCeEEEEEEcCCCCCCCC
Q 011796 170 ELNGKMVEVKRAVPKEFSPG 189 (477)
Q Consensus 170 ~l~Gr~l~V~~a~~k~~~~~ 189 (477)
+|++++|.|.++.++....+
T Consensus 168 ~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred EECCEEEEEEEeCCCCCCCC
Confidence 99999999999998765443
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=151.38 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=76.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999888 89999999999997
Q ss_pred C
Q 011796 183 P 183 (477)
Q Consensus 183 ~ 183 (477)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 27
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=5.1e-19 Score=159.60 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=79.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=149.65 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=77.2
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CccCCeEEEEEEc
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVKRA 181 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~--~~l~Gr~l~V~~a 181 (477)
+++|||+|||+++||+||+++|++|| +|++|+|++|+.++++||||||+|+++++|++||+.++ ..|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999864 5799999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987653
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-20 Score=150.00 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=75.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--H-cCCccCCeEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-~~~~i~Gr~l~V~~a 80 (477)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.++++|++|| + +...|++++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999 3 345799999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887543
No 30
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=153.07 Aligned_cols=89 Identities=24% Similarity=0.521 Sum_probs=82.6
Q ss_pred CCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 100 PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 100 ~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
......++|||+|||+++||++|+++|++||+|++|+|++++.++++||||||+|+++++|++||+.++ ..|++++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999888 8999999999
Q ss_pred EEcCCCCCCC
Q 011796 179 KRAVPKEFSP 188 (477)
Q Consensus 179 ~~a~~k~~~~ 188 (477)
++++++..++
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876554
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=150.02 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|+ +|...|++++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 776544
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=149.33 Aligned_cols=83 Identities=13% Similarity=0.299 Sum_probs=78.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.++ ++|++++|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred CCCC
Q 011796 182 VPKE 185 (477)
Q Consensus 182 ~~k~ 185 (477)
..++
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7554
No 33
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.1e-19 Score=158.81 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=81.9
Q ss_pred EEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHh
Q 011796 49 FGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126 (477)
Q Consensus 49 ~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F 126 (477)
++|++|.|+..+.+|+ ++.....++.- +.. ...+......++|||+|||+++|+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~----------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY----------------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp ------------------------------CCS----------------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCc----------------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4566777777777777 44443333321 111 1112233467899999999999999999999
Q ss_pred hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 011796 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (477)
Q Consensus 127 ~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~ 187 (477)
++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++++++...
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999888 8999999999999876543
No 34
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.9e-19 Score=160.47 Aligned_cols=137 Identities=13% Similarity=0.208 Sum_probs=79.7
Q ss_pred EEeCCHHHHHHHH--HcCCccC--CeEEEEeecCCcchhhhhc----cCCCCCCCCCCCCcccceeecCCCCCCCHHHHH
Q 011796 52 VVFADPAVAERVI--MDKHMID--GRTVEAKKAVPRDDQNMLN----RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123 (477)
Q Consensus 52 VeF~~~e~A~kAl--~~~~~i~--Gr~l~V~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~ 123 (477)
.+|.++++|+.++ ++..... ++.+.+.+........... ........+......++|||.|||+++|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999888 4443333 4555544432211100000 000011112233456789999999999999999
Q ss_pred HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 011796 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 124 ~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k~~~~ 188 (477)
++|++||.|+.|.|++++.+++++|||||+|.+.++|++||+.++ +.|.+++|.|.++.++...+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999888 89999999999998776544
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=146.95 Aligned_cols=86 Identities=33% Similarity=0.568 Sum_probs=80.7
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~ 180 (477)
.....++|||.|||+++||++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++.+|++++|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
+.++..
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 987654
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=143.87 Aligned_cols=87 Identities=46% Similarity=0.943 Sum_probs=80.4
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||++..+.|++++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999994448999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
++++.+.
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9887654
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.6e-18 Score=148.23 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=80.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
+++...+
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9877644
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=142.89 Aligned_cols=85 Identities=31% Similarity=0.578 Sum_probs=80.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 357899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887653
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=144.51 Aligned_cols=86 Identities=24% Similarity=0.446 Sum_probs=81.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987654
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=143.33 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=80.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999899999999999999999999998888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
++++..
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=145.04 Aligned_cols=87 Identities=26% Similarity=0.410 Sum_probs=81.5
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
+++++...
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99876543
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=146.21 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=81.5
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred EcCCCCCCC
Q 011796 180 RAVPKEFSP 188 (477)
Q Consensus 180 ~a~~k~~~~ 188 (477)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 999766543
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=144.58 Aligned_cols=84 Identities=42% Similarity=0.780 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 88754
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=147.16 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCC----ccCCe
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGE--VVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH----MIDGR 73 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~--V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~----~i~Gr 73 (477)
+.+..+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.++++|++|+ +++. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999995 779999999999999999999999999999999 6664 58999
Q ss_pred EEEEeecCC
Q 011796 74 TVEAKKAVP 82 (477)
Q Consensus 74 ~l~V~~a~~ 82 (477)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=145.43 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=81.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|+++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred CCCCCCCC
Q 011796 182 VPKEFSPG 189 (477)
Q Consensus 182 ~~k~~~~~ 189 (477)
+++..+..
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.4e-18 Score=145.38 Aligned_cols=87 Identities=26% Similarity=0.496 Sum_probs=81.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
++++...+
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876544
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=145.39 Aligned_cols=87 Identities=30% Similarity=0.593 Sum_probs=81.2
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998888 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
++++...+
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99877543
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.8e-18 Score=137.58 Aligned_cols=81 Identities=27% Similarity=0.547 Sum_probs=77.4
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
+.+|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++|++.++ +.|++++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999887 899999999999998
Q ss_pred CC
Q 011796 184 KE 185 (477)
Q Consensus 184 k~ 185 (477)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=143.73 Aligned_cols=85 Identities=29% Similarity=0.530 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999999989999999999999999999999 899999999999999
Q ss_pred cCCcchh
Q 011796 80 AVPRDDQ 86 (477)
Q Consensus 80 a~~~~~~ 86 (477)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887653
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=145.20 Aligned_cols=87 Identities=34% Similarity=0.727 Sum_probs=81.0
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
....++|||.|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+...+.|++++|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45778999999999999999999999999999999999999999999999999999999999999338999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
+++...+
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 9887654
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=145.77 Aligned_cols=85 Identities=45% Similarity=0.835 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
|..+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4578899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=141.31 Aligned_cols=84 Identities=17% Similarity=0.414 Sum_probs=78.8
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 79999999999999999999999888 899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=143.70 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=81.4
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHhc-C-CccCCeEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD-HNTQRPRGFGFITYDSEEAVDRVLHKT-F-HELNGKMVE 177 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d-~~tg~~rG~aFVeF~s~e~a~~Al~~~-~-~~l~Gr~l~ 177 (477)
.....++|||.|||+++|+++|+++|++||+|+.|+|+++ +.+++++|||||+|+++++|++||+.+ + +.|++++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3457789999999999999999999999999999999999 788999999999999999999999998 6 899999999
Q ss_pred EEEcCCCCCCC
Q 011796 178 VKRAVPKEFSP 188 (477)
Q Consensus 178 V~~a~~k~~~~ 188 (477)
|++++++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876543
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=5.9e-18 Score=141.80 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=78.5
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++|+ |++|+|++|+.+++++|||||+|+++++|++|| +++ ++|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999996 999999999999999999999999999999999 666 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99876543
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=142.63 Aligned_cols=86 Identities=26% Similarity=0.424 Sum_probs=80.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
...++|||+|||+++|+++|+++|++||+|++| +|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876543
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=3.9e-18 Score=145.68 Aligned_cols=84 Identities=30% Similarity=0.549 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 57899999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 887554
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=141.86 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=79.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN---TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~---tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++. ++++++||||+|+++++|++||+.++ +.|++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999887 66899999999999999999999988 8999999999
Q ss_pred EEcCCCCCCC
Q 011796 179 KRAVPKEFSP 188 (477)
Q Consensus 179 ~~a~~k~~~~ 188 (477)
++++++...+
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=141.86 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=79.7
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||+|++|+|+++ ++++++||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457789999999999999999999999999999999998 78999999999999999999999888 899999999999
Q ss_pred cCCCCCCCC
Q 011796 181 AVPKEFSPG 189 (477)
Q Consensus 181 a~~k~~~~~ 189 (477)
++++..++.
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876543
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=141.34 Aligned_cols=83 Identities=29% Similarity=0.663 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 57899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 88754
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=145.89 Aligned_cols=85 Identities=29% Similarity=0.479 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
|..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9988754
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-18 Score=140.73 Aligned_cols=87 Identities=30% Similarity=0.499 Sum_probs=80.2
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
....++|||.|||+++++++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+. .+.|++++|+|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999984 47899999999999
Q ss_pred CCCCCCCC
Q 011796 182 VPKEFSPG 189 (477)
Q Consensus 182 ~~k~~~~~ 189 (477)
.+++....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 98876543
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=139.22 Aligned_cols=81 Identities=27% Similarity=0.530 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=143.44 Aligned_cols=84 Identities=38% Similarity=0.721 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~ 82 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||.+.+.|++++|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999878899999999999988
Q ss_pred cchh
Q 011796 83 RDDQ 86 (477)
Q Consensus 83 ~~~~ 86 (477)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cqg_A 93 KQSQ 96 (103)
T ss_dssp TCCC
T ss_pred CCcC
Confidence 7543
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=2.6e-18 Score=139.30 Aligned_cols=79 Identities=52% Similarity=1.040 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999 7788899999999875
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=138.65 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=75.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|+++++|++|++.++ +.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred CCC
Q 011796 182 VPK 184 (477)
Q Consensus 182 ~~k 184 (477)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 66
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.5e-18 Score=138.52 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
++.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678999999999999999999999999999999999999889999999999999999999999 89999999999999
Q ss_pred ecC
Q 011796 79 KAV 81 (477)
Q Consensus 79 ~a~ 81 (477)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=142.54 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=78.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
...++|||.|||+++|+++|+++|++|| |++|+|++++.+ ++++|||||+|+++++|++|| .++ +.|++++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4668999999999999999999999999 999999999988 899999999999999999999 666 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
+++++.+.
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99877644
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=2e-18 Score=147.58 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 88754
No 69
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=1.1e-18 Score=141.86 Aligned_cols=82 Identities=22% Similarity=0.540 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 567899999999999999999999999999999999999989999999999999999999999 9999999999999998
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
.++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=143.27 Aligned_cols=87 Identities=23% Similarity=0.417 Sum_probs=80.8
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-------CccCCe
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-------HELNGK 174 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-------~~l~Gr 174 (477)
....++|||.|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567899999999999999999999999999999999999999999999999999999999999874 689999
Q ss_pred EEEEEEcCCCCCCC
Q 011796 175 MVEVKRAVPKEFSP 188 (477)
Q Consensus 175 ~l~V~~a~~k~~~~ 188 (477)
+|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876654
No 71
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=3.8e-18 Score=138.28 Aligned_cols=80 Identities=39% Similarity=0.780 Sum_probs=75.8
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++++|+|++|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999988778899999999986
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=138.90 Aligned_cols=83 Identities=28% Similarity=0.556 Sum_probs=78.3
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.+...++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCC
Q 011796 180 RAVP 183 (477)
Q Consensus 180 ~a~~ 183 (477)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=4.5e-18 Score=136.38 Aligned_cols=80 Identities=28% Similarity=0.530 Sum_probs=76.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCC
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~ 82 (477)
..+|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred cc
Q 011796 83 RD 84 (477)
Q Consensus 83 ~~ 84 (477)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 74
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=8.1e-19 Score=145.81 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=74.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc--EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C----ccCCeE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT--ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H----ELNGKM 175 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~--V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~----~l~Gr~ 175 (477)
....+|||+|||+++||++|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+.++ . .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 5799999999999999999999999999999999887 3 499999
Q ss_pred EEEEEcCC
Q 011796 176 VEVKRAVP 183 (477)
Q Consensus 176 l~V~~a~~ 183 (477)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.7e-18 Score=145.06 Aligned_cols=85 Identities=39% Similarity=0.731 Sum_probs=79.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.+++.|+|++|+|+++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 46789999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCC
Q 011796 183 PKEFS 187 (477)
Q Consensus 183 ~k~~~ 187 (477)
+++.+
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3.6e-18 Score=143.66 Aligned_cols=86 Identities=24% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc---CCeEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGKMVE 177 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l---~Gr~l~ 177 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ..+ .+++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999888 676 889999
Q ss_pred EEEcCCCCCC
Q 011796 178 VKRAVPKEFS 187 (477)
Q Consensus 178 V~~a~~k~~~ 187 (477)
|+++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999987654
No 77
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=139.78 Aligned_cols=87 Identities=25% Similarity=0.581 Sum_probs=79.1
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||.|||+++|+++|+++|++||+|++|+|++++.. +++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998753 89999999999999999999887 89999999999
Q ss_pred EcCCCCCCCC
Q 011796 180 RAVPKEFSPG 189 (477)
Q Consensus 180 ~a~~k~~~~~ 189 (477)
+++++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998876543
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=143.88 Aligned_cols=83 Identities=27% Similarity=0.462 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 56899999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88754
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=141.26 Aligned_cols=81 Identities=22% Similarity=0.449 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.7e-18 Score=146.67 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=91.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|++|.|+++ ++++|||||+|.++++|++|+ +++..|+++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999976 456999999999999999999 8999999999999999
Q ss_pred CCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCc
Q 011796 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT 131 (477)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~ 131 (477)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 876432 356778899999999999984
No 81
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=143.73 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 56899999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 88754
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=145.21 Aligned_cols=85 Identities=48% Similarity=0.984 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++|| .+.+.|++++|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 357899999999999999999999999999999999999999999999999999999999999 7888999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 887543
No 83
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1e-17 Score=140.63 Aligned_cols=85 Identities=26% Similarity=0.426 Sum_probs=78.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC---eEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG---KMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G---r~l~V 178 (477)
...++|||+|||+++++++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.++ +.|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 68999999999999999999999888 78888 99999
Q ss_pred EEcCCCCCCC
Q 011796 179 KRAVPKEFSP 188 (477)
Q Consensus 179 ~~a~~k~~~~ 188 (477)
++++++..++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=144.18 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc------CCccCCeE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD------KHMIDGRT 74 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~------~~~i~Gr~ 74 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++ .+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 46889999999999999999999999999999999999999999999999999999999999 77 89999999
Q ss_pred EEEeecCCcch
Q 011796 75 VEAKKAVPRDD 85 (477)
Q Consensus 75 l~V~~a~~~~~ 85 (477)
|.|+++.++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999988754
No 85
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=4.9e-18 Score=145.60 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=74.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
...+|||+|||+++||++|+++|++||.|++|+|++|+. .+||||||+|+++++|++||++++ ++|++++|+|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999964 479999999999999999999888 89999999999998
Q ss_pred CCCCC
Q 011796 183 PKEFS 187 (477)
Q Consensus 183 ~k~~~ 187 (477)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 77654
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=141.71 Aligned_cols=84 Identities=30% Similarity=0.556 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEA-VIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v-~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
+.+.++|||+|||+++++++|+++|++||+|++| +|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 99999889999999999999999999999 89999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9988754
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=147.43 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEV-VEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V-~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++||++|+++|++||.| ++|+|++++ ++++||||||+|.++++|++|| ++.+.|++++|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4678999999999999999999999999999 899999998 8999999999999999999999 888999999999999
Q ss_pred cCCcchhhhhc
Q 011796 80 AVPRDDQNMLN 90 (477)
Q Consensus 80 a~~~~~~~~~~ 90 (477)
+.++.......
T Consensus 91 a~~~~~~~~~~ 101 (114)
T 2cpy_A 91 VTLEDMREIEK 101 (114)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 98877655443
No 88
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=141.70 Aligned_cols=99 Identities=26% Similarity=0.442 Sum_probs=83.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|.++++|++|+ ++.+.|++++|+|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 7899999999999999999 7999999999999999887
Q ss_pred chhhhhccCCCCCCCCCCCCcccceeecCCCC
Q 011796 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLAS 115 (477)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~ 115 (477)
......... ........+|||++|+.
T Consensus 76 ~~~~~~~~~------~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRP------PARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSC------CCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCC------CccccCCCceecCCCCC
Confidence 643221111 11123467899999973
No 89
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.1e-18 Score=142.95 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=71.6
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcC--cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||+.++ ++|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 89999999999999
Q ss_pred CCCCCC
Q 011796 183 PKEFSP 188 (477)
Q Consensus 183 ~k~~~~ 188 (477)
++...+
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 90
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.3e-19 Score=171.47 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=76.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcC--cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999888 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
|+++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98653
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=138.27 Aligned_cols=81 Identities=20% Similarity=0.491 Sum_probs=76.9
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cC
Q 011796 181 AV 182 (477)
Q Consensus 181 a~ 182 (477)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=144.71 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. +++||||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35679999999999999999999999999999999999987 999999999999999999999 8899999999999988
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
......
T Consensus 87 ~~~~~~ 92 (103)
T 1s79_A 87 DDYFAK 92 (103)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 764433
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=146.38 Aligned_cols=86 Identities=42% Similarity=0.764 Sum_probs=80.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||.|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+...+.|++++|+|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999994489999999999999
Q ss_pred CCCCCC
Q 011796 183 PKEFSP 188 (477)
Q Consensus 183 ~k~~~~ 188 (477)
+++...
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887644
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=143.65 Aligned_cols=83 Identities=39% Similarity=0.782 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++. .|++++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999 555 89999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.6e-18 Score=141.17 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=79.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhh-cCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Cc-cCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HE-LNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~-~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~-l~Gr~l~V~ 179 (477)
...++|||+|||+++|+++|+++|++ ||.|++|+|++|+ +++++|||||+|+++++|++||+.++ +. |++++|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999999 89999999999999999999999888 78 999999999
Q ss_pred EcCCCCCCC
Q 011796 180 RAVPKEFSP 188 (477)
Q Consensus 180 ~a~~k~~~~ 188 (477)
++.++..+.
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776544
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.5e-18 Score=141.97 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=70.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
.+|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.++++|++|+ ++++.|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999999999999999999999999999999 99999999999999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8654
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=138.38 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++++++|+++|++||+|++|+|++|+.+ +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 356789999999999999999999999999999999998654 68999999999999999999887 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876543
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=143.36 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.|+++++||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56799999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87643
No 99
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=138.76 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred CC
Q 011796 81 VP 82 (477)
Q Consensus 81 ~~ 82 (477)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=141.87 Aligned_cols=84 Identities=19% Similarity=0.367 Sum_probs=79.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 87653
No 101
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=141.56 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRA---TGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~---tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
..+.++|||+|||+++||++|+++|++||+|++|+|++++. |+++++||||+|.++++|++|+ ++.+.|++++|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999999877 6699999999999999999999 799999999999
Q ss_pred EeecCCcch
Q 011796 77 AKKAVPRDD 85 (477)
Q Consensus 77 V~~a~~~~~ 85 (477)
|+++.++..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 102
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=6.8e-18 Score=143.01 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=79.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87764
No 103
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=142.50 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHH--H-cCCccCCeEEEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD-RATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEA 77 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d-~~tg~srG~aFVeF~~~e~A~kAl--~-~~~~i~Gr~l~V 77 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ +.++++++||||+|.++++|++|| + +.+.|.+++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 357899999999999999999999999999999999999 788999999999999999999999 7 899999999999
Q ss_pred eecCCcch
Q 011796 78 KKAVPRDD 85 (477)
Q Consensus 78 ~~a~~~~~ 85 (477)
+++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988754
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.6e-18 Score=147.26 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++||++|+++|++||+ |++|+|++++. +++||||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 46789999999999999999999999999 89999999987 999999999999999999999 99999999999999
Q ss_pred ecCCcchhhhhc
Q 011796 79 KAVPRDDQNMLN 90 (477)
Q Consensus 79 ~a~~~~~~~~~~ 90 (477)
++.+++.+....
T Consensus 94 ~a~~~~~~~~~~ 105 (118)
T 2db1_A 94 KSHRTEMDWVLK 105 (118)
T ss_dssp EECHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 998776554443
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=143.41 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=80.4
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN 172 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~ 172 (477)
....++|||.|||+++|+++|+++|++||.|+ .|+|++|+.+++++|||||+|+++++|++||+.++ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35678999999999999999999999999999 79999999999999999999999999999999887 8999
Q ss_pred CeEEEEEEcCCCCCC
Q 011796 173 GKMVEVKRAVPKEFS 187 (477)
Q Consensus 173 Gr~l~V~~a~~k~~~ 187 (477)
+++|+|++++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=2.3e-18 Score=144.02 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCc------cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC-e
Q 011796 3 SDLGKLFIGGISW------DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG-R 73 (477)
Q Consensus 3 ~d~~~LfVgnLP~------~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G-r 73 (477)
...++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|+ ++.+.|++ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 9999999999999999999999999999999999999999999999999 99999999 9
Q ss_pred EEEEeecCCcch
Q 011796 74 TVEAKKAVPRDD 85 (477)
Q Consensus 74 ~l~V~~a~~~~~ 85 (477)
+|.|.++.+++.
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987654
No 107
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=6.8e-18 Score=141.44 Aligned_cols=82 Identities=17% Similarity=0.390 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||++++|++|+++|++|+ |++|+|++++.|++++|||||+|.++++|++|| ++.+.|.+++|.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 5679999999999999999999999996 999999999999999999999999999999999 99999999999999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1e-17 Score=138.53 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
.+++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ +++..|++++|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred Ccchhhh
Q 011796 82 PRDDQNM 88 (477)
Q Consensus 82 ~~~~~~~ 88 (477)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8866543
No 109
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=7.3e-18 Score=135.76 Aligned_cols=80 Identities=30% Similarity=0.542 Sum_probs=76.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++|++.++ +.|++++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999998887 8999999999998
Q ss_pred C
Q 011796 182 V 182 (477)
Q Consensus 182 ~ 182 (477)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 110
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=138.89 Aligned_cols=79 Identities=25% Similarity=0.580 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999 8999999999999987
Q ss_pred C
Q 011796 81 V 81 (477)
Q Consensus 81 ~ 81 (477)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.3e-18 Score=141.76 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++++.|.+++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7754
No 112
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=141.88 Aligned_cols=82 Identities=22% Similarity=0.460 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++||++|+++|++|| |++|+|++++.| ++++|||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4679999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88754
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=5.7e-18 Score=143.87 Aligned_cols=84 Identities=48% Similarity=0.882 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|| ...+.|++++|.|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999 5568999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88754
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-18 Score=143.76 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++||+| +|+|++++ ++++||||||+|.++++|++|| ++.+.|.+|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 467899999999999999999999999955 99999998 7999999999999999999999 88999999999999887
Q ss_pred Ccc
Q 011796 82 PRD 84 (477)
Q Consensus 82 ~~~ 84 (477)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 115
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=143.33 Aligned_cols=84 Identities=30% Similarity=0.592 Sum_probs=78.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|++|+|++++ +++++|||||+|++.++|++||+.++ ..|++++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 89999999999999999999999988 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 877654
No 116
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=5.4e-18 Score=142.56 Aligned_cols=84 Identities=29% Similarity=0.519 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc---CCeEEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI---DGRTVE 76 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i---~Gr~l~ 76 (477)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++|+||||+|.++++|++|+ ++...+ .+++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 467899999999999999999999999999999999999999999999999999999999999 888887 899999
Q ss_pred EeecCCcch
Q 011796 77 AKKAVPRDD 85 (477)
Q Consensus 77 V~~a~~~~~ 85 (477)
|+++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987653
No 117
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1e-17 Score=138.57 Aligned_cols=82 Identities=16% Similarity=0.415 Sum_probs=78.1
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
+++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++|++.++ ..|++++|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999888 899999999999998
Q ss_pred CCC
Q 011796 184 KEF 186 (477)
Q Consensus 184 k~~ 186 (477)
++.
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=141.30 Aligned_cols=85 Identities=29% Similarity=0.609 Sum_probs=80.0
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998774
No 119
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=8.7e-18 Score=147.28 Aligned_cols=85 Identities=28% Similarity=0.568 Sum_probs=80.1
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
...+.++|||.|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|++++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++++++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998765
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=145.12 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++| .|++|+|++++. +++||||||+|.++++|++|| ++.+.|.+|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456899999999999999999999999 999999999986 999999999999999999999 99999999999999987
Q ss_pred Ccchhh
Q 011796 82 PRDDQN 87 (477)
Q Consensus 82 ~~~~~~ 87 (477)
++....
T Consensus 92 ~~~~~~ 97 (109)
T 2dnn_A 92 ERQWVA 97 (109)
T ss_dssp HHHHHH
T ss_pred ccchhh
Confidence 764433
No 121
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=139.15 Aligned_cols=83 Identities=20% Similarity=0.399 Sum_probs=78.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeE----E
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTIT-DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM----V 176 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~-~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~----l 176 (477)
...++|||+|||++++|++|+++|++||+|+ +|+|++|+.+++++|||||+|+++++|++||+.++ +.|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4678999999999999999999999999999 99999999999999999999999999999999888 8999999 9
Q ss_pred EEEEcCCCC
Q 011796 177 EVKRAVPKE 185 (477)
Q Consensus 177 ~V~~a~~k~ 185 (477)
+|.+|++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998654
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=139.50 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=78.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++++++|+++|++||.|+++++++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
++++.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98653
No 123
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-18 Score=141.81 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE-AVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~-v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++||++|+++|++||+|++ |+|+.+ .+++++|||||+|.++++|++|| ++.+.|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46799999999999999999999999999998 888888 67999999999999999999999 8889999999999998
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 124
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=140.83 Aligned_cols=85 Identities=25% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIM-RDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTV 75 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~-V~~v~i~-~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l 75 (477)
+.+.++|||+|||+++|+++|+++|++||+ |++|+|+ .++.++++||||||+|.++++|++|+ ++ ...|++++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 357899999999999999999999999998 9999998 88888999999999999999999999 65 589999999
Q ss_pred EEeecCCcchh
Q 011796 76 EAKKAVPRDDQ 86 (477)
Q Consensus 76 ~V~~a~~~~~~ 86 (477)
+|+++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887654
No 125
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=141.79 Aligned_cols=82 Identities=24% Similarity=0.623 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ +++..|.+++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 57899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 126
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=139.47 Aligned_cols=82 Identities=30% Similarity=0.460 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCee-EEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeE----E
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV-EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRT----V 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~-~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~----l 75 (477)
.+.++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++|+ ++.+.|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5789999999999999999999999999999 9999999999999999999999999999999 8999999999 9
Q ss_pred EEeecCCcc
Q 011796 76 EAKKAVPRD 84 (477)
Q Consensus 76 ~V~~a~~~~ 84 (477)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987653
No 127
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=140.17 Aligned_cols=81 Identities=27% Similarity=0.601 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|+ ++.+.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 57899999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 88754
No 128
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=8.8e-18 Score=145.83 Aligned_cols=86 Identities=19% Similarity=0.362 Sum_probs=80.4
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877654
No 129
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.9e-18 Score=141.45 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
....++|||+|||+++||+||+++|++||. ++|+|++|+ ++++||||||+|+++++|++||++..++|++|.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 356689999999999999999999999995 599999998 799999999999999999999975448999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
.+++.
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87664
No 130
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9e-18 Score=142.95 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--------EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G 72 (477)
.+.++|||+|||+++|+++|+++|++||+|+ .|+|+.++.+++++|||||+|.++++|++|| ++.+.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4789999999999999999999999999999 6999999899999999999999999999999 89999999
Q ss_pred eEEEEeecCCcch
Q 011796 73 RTVEAKKAVPRDD 85 (477)
Q Consensus 73 r~l~V~~a~~~~~ 85 (477)
++|+|+++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999988754
No 131
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-18 Score=142.70 Aligned_cols=87 Identities=29% Similarity=0.612 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|.+++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 356799999999999999999999999999999999999989999999999999999999999 899999999999999
Q ss_pred cCCcchhhh
Q 011796 80 AVPRDDQNM 88 (477)
Q Consensus 80 a~~~~~~~~ 88 (477)
+.++.....
T Consensus 85 a~~~~~~~~ 93 (104)
T 1p1t_A 85 AASEKNKEE 93 (104)
T ss_dssp TTCTTHHHH
T ss_pred CCCccchhh
Confidence 998766543
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=152.30 Aligned_cols=84 Identities=23% Similarity=0.504 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.++++|++|| ++.+.|++++|.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3578999999999999999999999999 9999999999999999999999999999999999 79999999999999
Q ss_pred ecCCcchh
Q 011796 79 KAVPRDDQ 86 (477)
Q Consensus 79 ~a~~~~~~ 86 (477)
++.++...
T Consensus 133 ~a~~~~~~ 140 (156)
T 3n9u_C 133 PATRQNLS 140 (156)
T ss_dssp ECCHHHHH
T ss_pred EcCCCcch
Confidence 99876543
No 133
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=1.6e-17 Score=139.38 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC---eEEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG---RTVEA 77 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G---r~l~V 77 (477)
.+.++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++...|.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 6999999999999999999999 89999998 99999
Q ss_pred eecCCcchh
Q 011796 78 KKAVPRDDQ 86 (477)
Q Consensus 78 ~~a~~~~~~ 86 (477)
+++.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887543
No 134
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=136.96 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++|+ ++++.|++++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35689999999999999999999999999999999999986 999999999999999999999 899999999999998
Q ss_pred cCC
Q 011796 80 AVP 82 (477)
Q Consensus 80 a~~ 82 (477)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 135
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=139.79 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 467899999999999999999999999999999999998 4999999999999999999999 8999999999999998
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=5.6e-18 Score=133.42 Aligned_cols=74 Identities=45% Similarity=0.815 Sum_probs=71.5
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 6999999999999999999999999999999999989999999999999999999999 9999999999999875
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.7e-17 Score=134.76 Aligned_cols=81 Identities=21% Similarity=0.464 Sum_probs=76.2
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|+ .++ +.|++++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4578999999999999999999999999999999999999999999999999999999999 666 89999999999998
Q ss_pred CCC
Q 011796 183 PKE 185 (477)
Q Consensus 183 ~k~ 185 (477)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 138
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=138.43 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=75.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||.|++|+|+.+ .++++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999665 4579999999999999999998888 899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
++++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876543
No 139
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=8.1e-17 Score=137.11 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=77.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|+++|+++|++||+|++|+|++++. +++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4678999999999999999999999999999999999984 8999999999999999999999887 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
++...
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 86543
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=138.38 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=75.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC-----eE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG-----KM 175 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G-----r~ 175 (477)
....++|||.|||+++|++||+++|++||+|++|+|++| |||||+|+++++|++||++++ ++|++ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999976 699999999999999999988 89999 99
Q ss_pred EEEEEcCCCCCCCCCC
Q 011796 176 VEVKRAVPKEFSPGPS 191 (477)
Q Consensus 176 l~V~~a~~k~~~~~~~ 191 (477)
|+|++|+++...+.+.
T Consensus 85 i~V~~a~~~~~~~~rs 100 (108)
T 1x4c_A 85 IRVKVDGPRSPSYGRS 100 (108)
T ss_dssp EEEEESSCCSCCCCCS
T ss_pred EEEEeCCCCCCCCCCC
Confidence 9999999877655443
No 141
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=135.25 Aligned_cols=82 Identities=13% Similarity=0.416 Sum_probs=76.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR-PRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~-~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
..++|||+|||+++|+++|+++|++||.|++|+|+.++.+.. +++||||+|+++++|++|++.++ ..|++++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999988766 89999999999999999999877 8999999999999
Q ss_pred CCCC
Q 011796 182 VPKE 185 (477)
Q Consensus 182 ~~k~ 185 (477)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 142
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=142.59 Aligned_cols=82 Identities=46% Similarity=0.895 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .+.+.|++++|.|+++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999999999999999999999999999999 878899999999999988
Q ss_pred cch
Q 011796 83 RDD 85 (477)
Q Consensus 83 ~~~ 85 (477)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=146.90 Aligned_cols=84 Identities=29% Similarity=0.490 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++||||||+|.++++|++|+ ++...|.+++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887543
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-18 Score=145.80 Aligned_cols=84 Identities=19% Similarity=0.369 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.++++|++|| ++.+.|++++|.|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred Ccchh
Q 011796 82 PRDDQ 86 (477)
Q Consensus 82 ~~~~~ 86 (477)
++...
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76543
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=138.61 Aligned_cols=85 Identities=15% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++||+||+++|++||.|++ |+|++| .+++++|||||+|+++++|++||+++.+.|.+|.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 346789999999999999999999999999998 888888 779999999999999999999999944899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
+.+++..
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 9876643
No 146
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=137.29 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=77.1
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~--------v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l 171 (477)
.+...++|||+|||+++|+++|+++|++||.|++ |+|++|+.+++++|||||+|+++++|++||+.++ ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 9999999999999999999999999999999877 899
Q ss_pred CCeEEEEEEcC
Q 011796 172 NGKMVEVKRAV 182 (477)
Q Consensus 172 ~Gr~l~V~~a~ 182 (477)
++++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 147
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=137.92 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++. .+|+||||+|.++++|++|+ ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 5689999999999999999999999999999999999865 37999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 88653
No 148
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1e-17 Score=146.81 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...|++++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 149
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.9e-17 Score=142.07 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred cC
Q 011796 181 AV 182 (477)
Q Consensus 181 a~ 182 (477)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 150
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=135.95 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=75.9
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++++++|+++|++||+|++|+|++++. +++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35678999999999999999999999999999999999987 8999999999999999999999877 899999999999
Q ss_pred cCC
Q 011796 181 AVP 183 (477)
Q Consensus 181 a~~ 183 (477)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 151
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.5e-17 Score=140.93 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7764
No 152
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=142.03 Aligned_cols=83 Identities=35% Similarity=0.691 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++|+ +++..|++++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 567999999999999999999999999999999999998 7999999999999999999999 7999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 877543
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=135.20 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++|+++|+++|++| +|++|+|+++ .+++++|||||+|.++++|++|| ++++.|.+++|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 568999999999999999999999999 9999999999 67999999999999999999999 99999999999999998
Q ss_pred Ccc
Q 011796 82 PRD 84 (477)
Q Consensus 82 ~~~ 84 (477)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 763
No 154
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=137.22 Aligned_cols=83 Identities=25% Similarity=0.560 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. .+++||||+|.++++|++|+ ++.+.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999999865 38999999999999999999 899999999999999
Q ss_pred cCCcchh
Q 011796 80 AVPRDDQ 86 (477)
Q Consensus 80 a~~~~~~ 86 (477)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887543
No 155
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=3.4e-18 Score=142.93 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=77.9
Q ss_pred cccceeecCCCC------CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC-eE
Q 011796 104 RTKKIFVGGLAS------TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG-KM 175 (477)
Q Consensus 104 ~~~~lfV~nLp~------~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G-r~ 175 (477)
..++|||+|||+ ++++++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ +.|++ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999999999999999999999999999999999888 89999 99
Q ss_pred EEEEEcCCCC
Q 011796 176 VEVKRAVPKE 185 (477)
Q Consensus 176 l~V~~a~~k~ 185 (477)
|+|.+|.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998754
No 156
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=136.26 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=75.2
Q ss_pred CcccceeecCCCCCCCHHHHH----HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
...++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ |+||||+|+++++|++||+.++ .+|++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999999876 7899999999999999999888 899999999
Q ss_pred EEEcCCCCC
Q 011796 178 VKRAVPKEF 186 (477)
Q Consensus 178 V~~a~~k~~ 186 (477)
|++|+++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 157
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=139.29 Aligned_cols=82 Identities=27% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc-cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCc-cCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSR-YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHM-IDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~-~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~-i~Gr~l~V~ 78 (477)
...++|||+|||+++|+++|+++|++ ||+|++|+|++++ ++++++||||+|.++++|++|| ++.+. |++++|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 56799999999999999999999999 9999999999999 8999999999999999999999 78888 999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9987654
No 158
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=9.1e-18 Score=148.60 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++||++|+++|++||+ |++|+|++++. +++||||||+|.++++|++|| ++.+.|.+|+|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 56789999999999999999999999999 89999999987 999999999999999999999 89999999999999
Q ss_pred ecCCcchhhh
Q 011796 79 KAVPRDDQNM 88 (477)
Q Consensus 79 ~a~~~~~~~~ 88 (477)
++.+++.+..
T Consensus 121 ~a~~~e~~~~ 130 (136)
T 2hgl_A 121 KSHRTEMDWV 130 (136)
T ss_dssp ECCHHHHHHH
T ss_pred ECChHHHHHH
Confidence 9987665443
No 159
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.1e-18 Score=139.45 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||++++|++|+++|++||+|+++++++++.+++++|||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999 8889999999999998
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 160
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=7.3e-18 Score=138.80 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++||++|+++|++||+|+++++++++.++++++||||+|.++++|++|+ ++++.|++++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999 89999999999999875
Q ss_pred C
Q 011796 82 P 82 (477)
Q Consensus 82 ~ 82 (477)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 161
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=133.59 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=75.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|++||+++|++| .|++|+|+++ .+++++|||||+|+++++|++||+ ++ +.|++++|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 467899999999999999999999999 9999999999 779999999999999999999999 77 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88754
No 162
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=134.53 Aligned_cols=82 Identities=26% Similarity=0.488 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR-ARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~-srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++. +++||||+|.++++|++|+ +++..|++++|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4678999999999999999999999999999999999987766 9999999999999999999 899999999999999
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 163
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=136.60 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G 72 (477)
...++|||+|||+++++++|+++|++||+|++ |+|++++.+++++|||||+|.++++|++|+ +++..|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 999999999999999999999999999999 89999999
Q ss_pred eEEEEeecC
Q 011796 73 RTVEAKKAV 81 (477)
Q Consensus 73 r~l~V~~a~ 81 (477)
++|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 164
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=140.44 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=73.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V~ 179 (477)
...++|||+|||+++||+||+++|++||+|++|+|+++ ||||||+|+++++|++|++.++ .+|+|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999975 6899999999999999999654 68999999999
Q ss_pred EcCCCCCCCC
Q 011796 180 RAVPKEFSPG 189 (477)
Q Consensus 180 ~a~~k~~~~~ 189 (477)
+|++++..+.
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9998876553
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=2.8e-17 Score=148.16 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.|+++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 166
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=140.20 Aligned_cols=79 Identities=10% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEE
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEA 77 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V 77 (477)
+.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ...|++++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 357899999999999999999999999999999999875 689999999999999999 44 47899999999
Q ss_pred eecCCcchh
Q 011796 78 KKAVPRDDQ 86 (477)
Q Consensus 78 ~~a~~~~~~ 86 (477)
.++.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999877544
No 167
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1e-17 Score=143.76 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ +++..|++++|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46799999999999999999999999999999999999999999999999999999999999 7899999999999986
Q ss_pred C
Q 011796 81 V 81 (477)
Q Consensus 81 ~ 81 (477)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8e-18 Score=146.41 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEV----VEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEA 77 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V----~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V 77 (477)
.+.++|||+|||+++||++|++||++|++| ++|+|++++ ++++||||||+|.++++|++|| ++++.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999985 689999985 7999999999999999999999 8889999999999
Q ss_pred eecCCcchhhhh
Q 011796 78 KKAVPRDDQNML 89 (477)
Q Consensus 78 ~~a~~~~~~~~~ 89 (477)
..+.+++.+...
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999877655443
No 169
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=4.2e-17 Score=137.29 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=76.4
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||.|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999 89999999999999999999999877 89999999999
Q ss_pred EcC
Q 011796 180 RAV 182 (477)
Q Consensus 180 ~a~ 182 (477)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 170
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.8e-17 Score=133.69 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=76.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++++++|+++|++||+|++|+|+++ ++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999984 68899999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 877643
No 171
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=135.12 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=76.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++| ..|++++++.+++++|||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999999999999999987 478899999899999999999999999999999887 899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987653
No 172
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=139.01 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=77.1
Q ss_pred CcccceeecCCCCCCCHHHHH---HHhhhcCcEEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 011796 103 GRTKKIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~---~~F~~~G~V~~v~i~~d~~tg---~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~ 175 (477)
...++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|+++++|++||+.++ ++|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457799999999999999999 999999999999999988744 567999999999999999999988 8999999
Q ss_pred EEEEEcCCCCC
Q 011796 176 VEVKRAVPKEF 186 (477)
Q Consensus 176 l~V~~a~~k~~ 186 (477)
|+|++|+++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998764
No 173
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=9.6e-18 Score=138.09 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=75.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++|++||+++|++||.|+++++++++.+++++|||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999877 8999999999998
Q ss_pred CC
Q 011796 182 VP 183 (477)
Q Consensus 182 ~~ 183 (477)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 174
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.1e-17 Score=143.46 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 46789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 77654
No 175
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=3.3e-17 Score=134.02 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
..+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|+ ++.+.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999984 6899999999999999999999 899999999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987643
No 176
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=9e-18 Score=147.21 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCC----ccCCeE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH----MIDGRT 74 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~--v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~----~i~Gr~ 74 (477)
...++|||+|||+++||++|+++|++||+|+. |+|++|+.|+++||||||+|.++ +|++|+ ++.+ .|++++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999977 99999999999999999999999 999999 8888 999999
Q ss_pred EEEeecCCcch
Q 011796 75 VEAKKAVPRDD 85 (477)
Q Consensus 75 l~V~~a~~~~~ 85 (477)
|+|+++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999988654
No 177
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=139.43 Aligned_cols=84 Identities=25% Similarity=0.568 Sum_probs=79.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87764
No 178
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=4.2e-17 Score=137.33 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++||++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 8999999999999999999999 7999999999999987
Q ss_pred C
Q 011796 81 V 81 (477)
Q Consensus 81 ~ 81 (477)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 179
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=135.00 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=73.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V~ 179 (477)
.++++|||+|||+++||++|+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999999865 6899999999999999999753 67999999999
Q ss_pred EcCCCCCCCC
Q 011796 180 RAVPKEFSPG 189 (477)
Q Consensus 180 ~a~~k~~~~~ 189 (477)
++++++.+..
T Consensus 87 ~a~~~~~~~~ 96 (101)
T 2cq1_A 87 YSNHKELKTS 96 (101)
T ss_dssp ECSCSSCCCC
T ss_pred EcCcccCcCC
Confidence 9998876553
No 180
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=146.93 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=78.9
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C----ccCCe
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITD--VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H----ELNGK 174 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~--v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~----~l~Gr 174 (477)
....++|||+|||+++||++|+++|++||.|+. |+|++|+.++++||||||+|+++ +|++||+.++ + +|+++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 99999999999999999999999 9999999998 7 99999
Q ss_pred EEEEEEcCCCCCC
Q 011796 175 MVEVKRAVPKEFS 187 (477)
Q Consensus 175 ~l~V~~a~~k~~~ 187 (477)
+|+|+++++++..
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 181
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=148.65 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=77.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcC--cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||+.++ ++|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999988 999999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
|.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98653
No 182
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=135.34 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lr----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
.+.++|||+|||++++|++|+ ++|++||+|++|+|++++.+ |+||||+|.++++|++|+ +++..|++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999999875 889999999999999999 999999999999
Q ss_pred EeecCCcc
Q 011796 77 AKKAVPRD 84 (477)
Q Consensus 77 V~~a~~~~ 84 (477)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998764
No 183
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.9e-18 Score=132.44 Aligned_cols=74 Identities=50% Similarity=0.942 Sum_probs=71.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++ +.|++++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999 55 9999999999986
No 184
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-18 Score=147.51 Aligned_cols=84 Identities=15% Similarity=0.350 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++||+|++++++.+..+++++|||||+|.++++|++|| ++.+.|++++|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 46789999999999999999999999999999777777778999999999999999999999 99999999999999998
Q ss_pred Ccchh
Q 011796 82 PRDDQ 86 (477)
Q Consensus 82 ~~~~~ 86 (477)
++...
T Consensus 103 ~~~~~ 107 (124)
T 1wel_A 103 KKGML 107 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 185
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-18 Score=135.29 Aligned_cols=79 Identities=23% Similarity=0.500 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|+++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999 8999999998887665
Q ss_pred C
Q 011796 81 V 81 (477)
Q Consensus 81 ~ 81 (477)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=8.8e-18 Score=142.09 Aligned_cols=86 Identities=16% Similarity=0.289 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++||++|+++|++||. |++|+|++++. ++++|||||+|.++++|++|| ++.+.|.+|.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 57889999999999999999999999988 89999999987 999999999999999999999 99999999999999
Q ss_pred ecCCcchhhhh
Q 011796 79 KAVPRDDQNML 89 (477)
Q Consensus 79 ~a~~~~~~~~~ 89 (477)
++.+++.+...
T Consensus 88 ~a~~~~~~~~~ 98 (107)
T 2lmi_A 88 EINNEDVDALM 98 (107)
T ss_dssp ECCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99887655443
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=139.49 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecC-CCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDR-ATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~-~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|.++++|++|+ ++++.|.+++|.|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4679999999999999999999999999 9999999998 68999999999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8764
No 188
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1e-17 Score=131.82 Aligned_cols=74 Identities=35% Similarity=0.635 Sum_probs=71.0
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeec
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a 80 (477)
+|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999 8889999999999875
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=132.02 Aligned_cols=76 Identities=42% Similarity=0.784 Sum_probs=73.6
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|++.+++.|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999987
No 190
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=141.21 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=77.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcE-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~ 180 (477)
+...++|||+|||+++|+++|+++|++||.| +.|+|++|+ ++++||||||+|+++++|++||++..++|++++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999999999999999999999 899999998 89999999999999999999999944899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
+.+++.
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987763
No 191
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=5.3e-18 Score=150.64 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=74.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||+|||+++||+||+++|++|| |++|+|++|++ +++||||||+|+++++|++||++..++|++|.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999 77999999987 999999999999999999999443389999999999998
Q ss_pred CCCC
Q 011796 183 PKEF 186 (477)
Q Consensus 183 ~k~~ 186 (477)
+++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7664
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-17 Score=142.01 Aligned_cols=83 Identities=19% Similarity=0.417 Sum_probs=77.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++|| .++ +.|++++|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999 666 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87643
No 193
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=133.60 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=73.2
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||.| +|+++ .++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3567899999999999999999999999977 56666 568899999999999999999999888 899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 998754
No 194
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=8.9e-17 Score=139.03 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=76.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++|| +++ +.|++++|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999 666 89999999999998
Q ss_pred CCCC
Q 011796 183 PKEF 186 (477)
Q Consensus 183 ~k~~ 186 (477)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 195
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=2.3e-17 Score=142.74 Aligned_cols=81 Identities=21% Similarity=0.520 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|++++|+|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 5689999999999999999999999999999999999989999999999999999999999 899999999999999876
Q ss_pred cc
Q 011796 83 RD 84 (477)
Q Consensus 83 ~~ 84 (477)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 196
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=137.43 Aligned_cols=80 Identities=13% Similarity=0.276 Sum_probs=74.7
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||+|||+++|+++|+++|++||+|++|+|++|+. +++||||||+|+++++|++||+...+.|+|++|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4578999999999999999999999999999999999988 999999999999999999999944489999999999876
Q ss_pred C
Q 011796 183 P 183 (477)
Q Consensus 183 ~ 183 (477)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 197
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=139.78 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=74.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
....+|||+|||+++||+||+++|++| .|++|+|++|+. +++||||||+|+++++|++||++..++|++|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456799999999999999999999999 899999999987 899999999999999999999654489999999999987
Q ss_pred CCC
Q 011796 183 PKE 185 (477)
Q Consensus 183 ~k~ 185 (477)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 198
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=140.85 Aligned_cols=87 Identities=25% Similarity=0.351 Sum_probs=75.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||.|+.|.+..+..+++++|||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999555444443478899999999999999999999988 899999999999
Q ss_pred cCCCCCCC
Q 011796 181 AVPKEFSP 188 (477)
Q Consensus 181 a~~k~~~~ 188 (477)
++++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99877654
No 199
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-17 Score=136.33 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=78.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc-EEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVM-YDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~-V~~v~i~-~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~ 177 (477)
...++|||+|||+++|+++|+++|++||. |++|.|+ .++.++++||||||+|+++++|++||+.++ +.|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999999 888889999999999999999999999874 689999999
Q ss_pred EEEcCCCCCC
Q 011796 178 VKRAVPKEFS 187 (477)
Q Consensus 178 V~~a~~k~~~ 187 (477)
|++|+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987654
No 200
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=2e-16 Score=132.47 Aligned_cols=80 Identities=29% Similarity=0.509 Sum_probs=72.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++|+++|+++|++||.|++|+|+ ++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999997 3499999999999999999887 899999999999
Q ss_pred cCCCCCCCC
Q 011796 181 AVPKEFSPG 189 (477)
Q Consensus 181 a~~k~~~~~ 189 (477)
++++...+.
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998776543
No 201
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=136.50 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|+.+ .++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46799999999999999999999999999999999664 568999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87643
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=1.8e-17 Score=130.53 Aligned_cols=75 Identities=53% Similarity=0.977 Sum_probs=71.0
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
+|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|+++..+.|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999984448999999999875
No 203
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.6e-16 Score=137.68 Aligned_cols=87 Identities=20% Similarity=0.367 Sum_probs=80.2
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred EcCCCCCCC
Q 011796 180 RAVPKEFSP 188 (477)
Q Consensus 180 ~a~~k~~~~ 188 (477)
+|.++...+
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998766543
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=1.8e-17 Score=144.79 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCee--EEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--EAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~--~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~ 79 (477)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++|+. +++||||||+|.++++|++|| ++++.|.+|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 467899999999999999999999999 777 899999987 999999999999999999999 778999999999998
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86553
No 205
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.8e-17 Score=145.15 Aligned_cols=83 Identities=33% Similarity=0.546 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 206
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=1e-16 Score=138.83 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+ ++...|++++|+|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87643
No 207
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=129.91 Aligned_cols=77 Identities=21% Similarity=0.516 Sum_probs=71.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||+|++|+|+ |+||||+|+++++|++||+.++ .+|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 467899999999999999999999999999999998 5699999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 208
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=135.41 Aligned_cols=81 Identities=17% Similarity=0.364 Sum_probs=75.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc--------CC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL--------NG 173 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l--------~G 173 (477)
...++|||.|||+++|+++|+++|++||.|++|+|++++ +++++|||||+|+++++|++||+.++ +.| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 466899999999999999999999999999999999998 89999999999999999999999888 778 58
Q ss_pred eEEEEEEcCCC
Q 011796 174 KMVEVKRAVPK 184 (477)
Q Consensus 174 r~l~V~~a~~k 184 (477)
++|.|++|.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 209
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=134.06 Aligned_cols=80 Identities=20% Similarity=0.461 Sum_probs=74.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||.|||+++++++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|+++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 357899999999999999999999999999999999999999999999999999999999999888 8899998877654
Q ss_pred C
Q 011796 182 V 182 (477)
Q Consensus 182 ~ 182 (477)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9e-17 Score=138.81 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=73.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V~ 179 (477)
.+.++|||+|||+++||+||+++|++||.|++|+|+++ ||||||+|+++++|++|++.++ .+|.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999976 6899999999999999999775 57999999999
Q ss_pred EcCCCCCCC
Q 011796 180 RAVPKEFSP 188 (477)
Q Consensus 180 ~a~~k~~~~ 188 (477)
+|++++.++
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 999887655
No 211
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=3.7e-17 Score=157.15 Aligned_cols=81 Identities=23% Similarity=0.470 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.++++|++|| ++.+.|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678999999999999999999999999 9999999999999999999999999999999999 899999999999999
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 212
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=133.90 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=71.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V~ 179 (477)
.++++|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|+++++|++|++.++ .+|+|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999864 6799999999999999999764 46999999999
Q ss_pred EcCCCCCC
Q 011796 180 RAVPKEFS 187 (477)
Q Consensus 180 ~a~~k~~~ 187 (477)
++++++.+
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99987654
No 213
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=136.46 Aligned_cols=80 Identities=28% Similarity=0.528 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc--------CC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI--------DG 72 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i--------~G 72 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+ ++...| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 567999999999999999999999999999999999998 8999999999999999999999 899988 57
Q ss_pred eEEEEeecCCc
Q 011796 73 RTVEAKKAVPR 83 (477)
Q Consensus 73 r~l~V~~a~~~ 83 (477)
++|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888888764
No 214
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=137.55 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=74.1
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH-NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~-~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
....++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|+++++|++|| .++ +.|++++|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35678999999999999999999999999 9999999998 68999999999999999999999 666 89999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 215
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1.6e-17 Score=130.74 Aligned_cols=75 Identities=37% Similarity=0.741 Sum_probs=72.0
Q ss_pred ceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 107 ~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
+|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|++++.+.|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998669999999999886
No 216
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.2e-17 Score=136.14 Aligned_cols=80 Identities=29% Similarity=0.646 Sum_probs=72.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.+++ |++|+ ++++.|++++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999 7999999999999999876
Q ss_pred chh
Q 011796 84 DDQ 86 (477)
Q Consensus 84 ~~~ 86 (477)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 217
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5e-17 Score=138.35 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCccCcHHHHH---HHHhccCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHH--HcCCccCCeEE
Q 011796 4 DLGKLFIGGISWDTDEERLK---EYFSRYGEVVEAVIMRDRATG---RARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lr---e~F~~~G~V~~v~i~~d~~tg---~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l 75 (477)
..++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|.++++|++|| ++.+.|++++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57899999999999999999 999999999999999988754 56699999999999999999 79999999999
Q ss_pred EEeecCCcc
Q 011796 76 EAKKAVPRD 84 (477)
Q Consensus 76 ~V~~a~~~~ 84 (477)
+|+++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998875
No 218
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=132.61 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=70.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C--ccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H--ELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~--~l~Gr~l~V~ 179 (477)
.++++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|+++++|++|++.++ . .|.||+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 46789999999999999999999999999999999853 6799999999999999999887 4 4899999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998775
No 219
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=1.7e-17 Score=135.36 Aligned_cols=81 Identities=33% Similarity=0.673 Sum_probs=72.9
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++++ |++|++.++ +.|+|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999988 8999999999999877
Q ss_pred CCC
Q 011796 185 EFS 187 (477)
Q Consensus 185 ~~~ 187 (477)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=1e-16 Score=144.48 Aligned_cols=81 Identities=33% Similarity=0.562 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|.+++|.|+++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4789999999999999999999999999999999999989999999999999999999999 79999999999999998
Q ss_pred Ccc
Q 011796 82 PRD 84 (477)
Q Consensus 82 ~~~ 84 (477)
++.
T Consensus 149 ~~~ 151 (158)
T 2kn4_A 149 YGR 151 (158)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 221
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=2.4e-17 Score=143.92 Aligned_cols=81 Identities=19% Similarity=0.353 Sum_probs=74.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTIT--DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~--~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~ 180 (477)
...++|||+|||+++||+||+++|++| .|+ +|+|++|++ +++||||||+|+++++|++||++++++|++|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456789999999999999999999999 677 999999988 9999999999999999999999877999999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 222
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=137.52 Aligned_cols=78 Identities=10% Similarity=0.226 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V~ 78 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ...|.+++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 46789999999999999999999999999999999875 689999999999999999 44 468999999999
Q ss_pred ecCCcchh
Q 011796 79 KAVPRDDQ 86 (477)
Q Consensus 79 ~a~~~~~~ 86 (477)
++.++...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 223
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=3.5e-17 Score=136.70 Aligned_cols=82 Identities=29% Similarity=0.632 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~ 82 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++||||||+|.++++|++|+.+.+.|++++|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 457899999999999999999999999999999999998 8999999999999999999999888899999999999987
Q ss_pred cch
Q 011796 83 RDD 85 (477)
Q Consensus 83 ~~~ 85 (477)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 224
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=4.2e-17 Score=140.54 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=75.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
...++|||+|||+++||+||+++|++||. |+.|+|++|+. +++||||||+|+++++|++||++..++|++|.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45678999999999999999999999999 89999999988 999999999999999999999944489999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997665
No 225
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=3.8e-17 Score=144.60 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=75.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
...++|||+|||+++||+||+++|++||. |++|+|++|+. +++||||||+|+++++|++||+ ++ ++|++|+|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45679999999999999999999999999 89999999988 9999999999999999999999 66 8999999999
Q ss_pred EEcCCCC
Q 011796 179 KRAVPKE 185 (477)
Q Consensus 179 ~~a~~k~ 185 (477)
.++.+++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9997665
No 226
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=133.46 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--H--cCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M--DKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~--~~~~i~Gr~l~V~ 78 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ + +...|.+++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998864 789999999999999999 3 4678999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987654
No 227
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=140.42 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 56899999999999999999999999999999999999999999999999999999999999 7899999999999875
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=135.87 Aligned_cols=82 Identities=27% Similarity=0.611 Sum_probs=75.8
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++++. .++|||||+|+++++|++|++.++ +.|++++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999864 489999999999999999999877 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98764
No 229
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=133.37 Aligned_cols=80 Identities=24% Similarity=0.493 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+| +|+++ .++++++||||+|.++++|++|| ++.+.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999977 56666 56899999999999999999999 899999999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988743
No 230
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=2e-17 Score=146.95 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++||++|+++|++|| |++|+|++|+. +++||||||+|.++++|++|| ++.+.|.+|.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 67999999986 999999999999999999999 88999999999999887
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 231
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=133.78 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V~ 78 (477)
...++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++ ...|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998863 689999999999999999 44 456999999999
Q ss_pred ecCCcchh
Q 011796 79 KAVPRDDQ 86 (477)
Q Consensus 79 ~a~~~~~~ 86 (477)
++.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876543
No 232
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=138.94 Aligned_cols=80 Identities=30% Similarity=0.551 Sum_probs=75.6
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999988 899999999987
Q ss_pred c
Q 011796 181 A 181 (477)
Q Consensus 181 a 181 (477)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 233
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=129.68 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=71.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccC--CeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN--GKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~--Gr~l~V~ 179 (477)
...++|||.|||+++|+++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.++ +.|+ +++|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 46689999999999999999999999999999999854 6799999999999999999888 8999 9999999
Q ss_pred EcCCCCC
Q 011796 180 RAVPKEF 186 (477)
Q Consensus 180 ~a~~k~~ 186 (477)
+++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998753
No 234
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=132.97 Aligned_cols=80 Identities=41% Similarity=0.589 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++| .+|+|++++.++++++||||+|.++++|++|| ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 568999999999999999999999976 47889999889999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 88754
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=127.97 Aligned_cols=78 Identities=18% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|||+++|+++|+++|++||.|++|+|+++ ||||+|+++++|++|++.++ ++|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999843 99999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 011796 181 AVPKEFS 187 (477)
Q Consensus 181 a~~k~~~ 187 (477)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9887653
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=132.32 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=70.3
Q ss_pred CcccceeecCCCC-CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEEE
Q 011796 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~V 178 (477)
.+.++|||+|||+ ++||+||+++|++||.|++|+|+++ |+||||+|+++++|++||+.++ .+|+|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 4699999999999999999876 3599999999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
.+|+++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 237
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=135.31 Aligned_cols=80 Identities=26% Similarity=0.607 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++ .+++|||||+|.++++|++|+ ++++.|++++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3578999999999999999999999999999999999986 358999999999999999999 899999999999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 238
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-17 Score=137.20 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=76.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|+. .++.++.++++||||||+|+++++|++||+ ++ +.|++++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45779999999999999999999999999988 777888888999999999999999999999 66 8999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
++++..+
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9876543
No 239
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=133.07 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC-----eEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG-----RTV 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G-----r~l 75 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||+|.++++|++|| ++.++|++ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 46789999999999999999999999999999999886 79999999999999999 88999999 999
Q ss_pred EEeecCCcch
Q 011796 76 EAKKAVPRDD 85 (477)
Q Consensus 76 ~V~~a~~~~~ 85 (477)
+|+++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999988654
No 240
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.4e-16 Score=129.46 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
.+.-|||+||++++||++|+++|.+||+|++++|+. +||||||+|.++++|++|+ +|..++.+|+|.|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999965 6899999999999999999 99999999999999884
No 241
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=128.40 Aligned_cols=76 Identities=28% Similarity=0.593 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||+|.++++|++|+ ++...|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3578999999999999999999999999999999997 579999999999999999 899999999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 988754
No 242
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-17 Score=142.46 Aligned_cols=82 Identities=13% Similarity=0.306 Sum_probs=76.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|+++.++.++.+++++|||||+|+++++|++||+ ++ +.|++++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999998888888899999999999999999999999 66 8999999999999
Q ss_pred CCCC
Q 011796 182 VPKE 185 (477)
Q Consensus 182 ~~k~ 185 (477)
.+++
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8765
No 243
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-17 Score=138.40 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
.+.++|||+|||+++|+++|+++|++||+|+. +++.++.++++||||||+|.++++|++|| ++.+.|.+++|+|+++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 36789999999999999999999999999988 77777778999999999999999999999 99999999999999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 244
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-16 Score=128.19 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=70.9
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhc--CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~--G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
....++|||+|||+++|+++|+++|++| |.|++|+++ |+||||+|++.++|++||+.++ +.|++++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999875 5699999999999999999888 8999999999
Q ss_pred EEcCCCCCC
Q 011796 179 KRAVPKEFS 187 (477)
Q Consensus 179 ~~a~~k~~~ 187 (477)
.+++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999987653
No 245
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=127.17 Aligned_cols=78 Identities=23% Similarity=0.471 Sum_probs=71.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|++|+|+++ ||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999999844 99999999999999999888 8999999999999
Q ss_pred CCCCCCC
Q 011796 182 VPKEFSP 188 (477)
Q Consensus 182 ~~k~~~~ 188 (477)
+++..++
T Consensus 79 ~~~~~~~ 85 (90)
T 2dnp_A 79 TKGQKKS 85 (90)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875543
No 246
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=128.35 Aligned_cols=81 Identities=26% Similarity=0.490 Sum_probs=71.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||+|++| +.++.+++ ||||+|+++++|++||+ ++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 66666655 99999999999999999 77 8999999999999
Q ss_pred CCCCCCCC
Q 011796 182 VPKEFSPG 189 (477)
Q Consensus 182 ~~k~~~~~ 189 (477)
.+++..+.
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 87765543
No 247
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=131.98 Aligned_cols=79 Identities=19% Similarity=0.451 Sum_probs=72.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|++|+|+++ ++||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35679999999999999999999999999999999976 6799999999999999998888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 987654
No 248
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=129.98 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCC--ccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH--MIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~--~i~Gr~l~V~ 78 (477)
..+++|||+|||+++||++|+++|++||+|++|+|++ .|+||||+|.++++|++|+ ++.. .|.+|+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4688999999999999999999999999999999985 4689999999999999999 5554 4889999999
Q ss_pred ecCCcc
Q 011796 79 KAVPRD 84 (477)
Q Consensus 79 ~a~~~~ 84 (477)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 249
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-17 Score=141.64 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=74.7
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcE----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTI----TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V----~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
...+|||+|||+++||+||+++|++|++| ++|+|++|+ ++++||||||+|+++++|++||+++.+.|.+|.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46799999999999999999999999976 689999985 7999999999999999999999985589999999999
Q ss_pred EcCCCCC
Q 011796 180 RAVPKEF 186 (477)
Q Consensus 180 ~a~~k~~ 186 (477)
.+.+++.
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9986653
No 250
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9e-18 Score=143.83 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=79.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG 173 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~--------v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G 173 (477)
.+.++|||+|||+++++++|+++|++||.|+. |+|++|+.+++++|||||+|+++++|++||+.++ ..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999999999999999999999999999999888 89999
Q ss_pred eEEEEEEcCCCCCC
Q 011796 174 KMVEVKRAVPKEFS 187 (477)
Q Consensus 174 r~l~V~~a~~k~~~ 187 (477)
++|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987653
No 251
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=3.1e-16 Score=142.83 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++++.|++++|||||+|.++++|++|| ++.+.|.+++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 252
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=129.86 Aligned_cols=78 Identities=27% Similarity=0.526 Sum_probs=72.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 6799999999999999999888 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88654
No 253
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.2e-16 Score=133.46 Aligned_cols=83 Identities=22% Similarity=0.579 Sum_probs=76.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||+|||+++++++|+++|++||.|++|+|++|+ +++++|||||+|+++++|++||+ ..+.|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 466899999999999999999999999999999999998 89999999999999999999998 5589999999999998
Q ss_pred CCCCC
Q 011796 183 PKEFS 187 (477)
Q Consensus 183 ~k~~~ 187 (477)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77643
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=133.26 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEE
Q 011796 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEA 77 (477)
Q Consensus 3 ~d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V 77 (477)
.+.++|||+|||+ ++||++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++ ...|++++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4688999999999 9999999999999999999999875 479999999999999999 55 35699999999
Q ss_pred eecCCcc
Q 011796 78 KKAVPRD 84 (477)
Q Consensus 78 ~~a~~~~ 84 (477)
.++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 255
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=4.9e-16 Score=130.13 Aligned_cols=77 Identities=22% Similarity=0.457 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4678999999999999999999999999999999873 49999999999999999 7999999999999999
Q ss_pred CCcchhh
Q 011796 81 VPRDDQN 87 (477)
Q Consensus 81 ~~~~~~~ 87 (477)
.++....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8876543
No 256
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=143.40 Aligned_cols=85 Identities=28% Similarity=0.483 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~ 71 (477)
+.+.++|||+|||+++++++|+++|++||+|++ |+|++++.+++++|||||+|.++++|++|+ ++...|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 567899999999999999999999999999999 999999889999999999999999999999 8999999
Q ss_pred CeEEEEeecCCcchh
Q 011796 72 GRTVEAKKAVPRDDQ 86 (477)
Q Consensus 72 Gr~l~V~~a~~~~~~ 86 (477)
+++|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887554
No 257
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=131.33 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=71.8
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~k 184 (477)
++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|+++++|++|++.++ +.|++++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999977 68899999999999999999887 8999999999999987
Q ss_pred CCC
Q 011796 185 EFS 187 (477)
Q Consensus 185 ~~~ 187 (477)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 258
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=129.45 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=71.5
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|+ ++++.+ ++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999997 777755 568899999999999999999888 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
++++.
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 259
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=132.76 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCccC------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCe-E
Q 011796 4 DLGKLFIGGISWDT------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-T 74 (477)
Q Consensus 4 d~~~LfVgnLP~~~------tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr-~ 74 (477)
..++|||+|||+++ |+++|+++|++||+|++|+|+ +.++++||||||+|.++++|++|+ ++++.|+++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 889999999999999999998 457899999999999999999999 799999998 9
Q ss_pred EEEeecCCcc
Q 011796 75 VEAKKAVPRD 84 (477)
Q Consensus 75 l~V~~a~~~~ 84 (477)
|.|+++...+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987653
No 260
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=128.99 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC--CeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID--GRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~--Gr~l~V~ 78 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ ++||||+|.++++|++|+ ++.+.|+ +++|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45789999999999999999999999999999999764 679999999999999999 8999999 9999999
Q ss_pred ecCCcc
Q 011796 79 KAVPRD 84 (477)
Q Consensus 79 ~a~~~~ 84 (477)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=131.85 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=75.0
Q ss_pred CcccceeecCCCCCC------CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCe-
Q 011796 103 GRTKKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK- 174 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~------teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr- 174 (477)
...++|||+|||+.+ |+++|+++|++||.|++|+|+ +.+++++|||||+|.++++|++||+.++ +.|+++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 789999999999999999998 4678999999999999999999999988 899998
Q ss_pred EEEEEEcCCCCC
Q 011796 175 MVEVKRAVPKEF 186 (477)
Q Consensus 175 ~l~V~~a~~k~~ 186 (477)
+|+|.++.+.++
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999987654
No 262
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=6.3e-16 Score=131.01 Aligned_cols=75 Identities=21% Similarity=0.486 Sum_probs=69.1
Q ss_pred cccceeecCCCCC-CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 104 RTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 104 ~~~~lfV~nLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
..++|||+|||++ +|+++|+++|++||+|++|+| +++||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999999 47899999999999999998888 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+++..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 85543
No 263
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=123.60 Aligned_cols=75 Identities=29% Similarity=0.521 Sum_probs=69.4
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc-C-CccCCeEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT-F-HELNGKMVEVK 179 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~-~-~~l~Gr~l~V~ 179 (477)
....++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.+ + +.|++++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999964 679999999999999999987 6 89999999999
Q ss_pred EcC
Q 011796 180 RAV 182 (477)
Q Consensus 180 ~a~ 182 (477)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 264
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=3.5e-16 Score=132.71 Aligned_cols=79 Identities=20% Similarity=0.459 Sum_probs=71.3
Q ss_pred CCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 101 ~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
.....++|||+|||+++|+++|+++|++||.|++|+|+ +|||||+|++.++|++|++.++ ..|++++|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999998 6799999999999999999887 89999999999
Q ss_pred EcCCCCCC
Q 011796 180 RAVPKEFS 187 (477)
Q Consensus 180 ~a~~k~~~ 187 (477)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99877653
No 265
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=128.30 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=72.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|+.| +.+++++|||||+|+++++|++||+.++ +.|+|++|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 467899999999999999999999999988766 3457889999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 887653
No 266
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=3.3e-16 Score=128.14 Aligned_cols=78 Identities=35% Similarity=0.611 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~ 82 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|+++....+.+.+++|.|+++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 46789999999999999999999999999999999874 7899999999999999654444567799999999988
Q ss_pred cch
Q 011796 83 RDD 85 (477)
Q Consensus 83 ~~~ 85 (477)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.6e-16 Score=130.30 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++++++|+++|++||+|++|+|+ ++|+||||+|.+.++|++|+ ++.+.|++++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 357899999999999999999999999999999998 45789999999999999999 8999999999999998
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=131.05 Aligned_cols=77 Identities=22% Similarity=0.479 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++|+ ++.+.|.+++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999876 689999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 88754
No 269
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.5e-16 Score=127.06 Aligned_cols=74 Identities=9% Similarity=0.187 Sum_probs=68.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+..|+|+||++.+||++|+++|.+||+|++++++. +||||||+|.++++|++|++.++ .+|.+|+|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999974 58999999999999999999999 89999999999995
Q ss_pred C
Q 011796 183 P 183 (477)
Q Consensus 183 ~ 183 (477)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 270
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=2.5e-16 Score=134.44 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=70.6
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....+|||+|||+++|+++|+++|++|| +|+.|+|+.+ +++|||||+|+++++|++||++++ .+|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 8999998643 478999999999999999999988 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
++.+.
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=129.64 Aligned_cols=77 Identities=27% Similarity=0.575 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 689999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87643
No 272
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=125.93 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=65.7
Q ss_pred CcEEEEcCCCccC------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCe-EE
Q 011796 5 LGKLFIGGISWDT------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-TV 75 (477)
Q Consensus 5 ~~~LfVgnLP~~~------tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr-~l 75 (477)
+++|||+|||+++ ++++|+++|++||+|++|+|+ +.++++||||||+|.++++|++|+ +++..|+++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 357899999999999999999999 899999999 88
Q ss_pred EE
Q 011796 76 EA 77 (477)
Q Consensus 76 ~V 77 (477)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 273
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=6.1e-17 Score=136.89 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=75.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc---EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
...++|||+|||+++|++||+++|++||. |++|+|++|+. ++++|||||+|+++++|++||++..+.|++|.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999998 89999999988 999999999999999999999943489999999999
Q ss_pred EcCCCC
Q 011796 180 RAVPKE 185 (477)
Q Consensus 180 ~a~~k~ 185 (477)
++.+++
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998765
No 274
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=134.54 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=72.9
Q ss_pred CcccceeecCCCCCCCHHHHH----HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
.+.++|||+|||+.+++++|+ ++|++||+|++|.|.+ ++++||||||+|++.++|++||+.++ ..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456799999999999999876 6999999999998864 47889999999999999999999998 899999999
Q ss_pred EEEcCCCCC
Q 011796 178 VKRAVPKEF 186 (477)
Q Consensus 178 V~~a~~k~~ 186 (477)
|.+|+++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=126.82 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~ 179 (477)
....++|||+|||+++|+++|+++|++||+|++| .|++++.++ .|||+|.++++|++||+.++ +.|++++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 588887654 39999999999999999888 89999999999
Q ss_pred EcCCCCC
Q 011796 180 RAVPKEF 186 (477)
Q Consensus 180 ~a~~k~~ 186 (477)
++.+++.
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9998853
No 276
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-17 Score=137.11 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|+.|.+..+..+++++|||||+|.++++|++|+ ++.+.|++++|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999954443333337899999999999999999999 7999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 88754
No 277
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=125.69 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++.+.|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999843 9999999999999999 899999999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987754
No 278
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=4.1e-16 Score=133.62 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=66.8
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeE-----E
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM-----V 176 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~-----l 176 (477)
....+|||.|||+++||+||+++|++||+|++|+|+++ |||||+|+++++|++||++++ ++|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35679999999999999999999999999999999866 799999999999999999888 8999998 8
Q ss_pred EEEEcCCCCCCC
Q 011796 177 EVKRAVPKEFSP 188 (477)
Q Consensus 177 ~V~~a~~k~~~~ 188 (477)
+|+.+.++...+
T Consensus 87 ~v~~~~~~~~~~ 98 (115)
T 3beg_B 87 RVKVDGPRSPSY 98 (115)
T ss_dssp EEEECC----CC
T ss_pred EeccCCCCCCCC
Confidence 888877765443
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=128.04 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|+ ++|+.+ ++++||||+|.++++|++|+ ++...|++++|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999997 677654 67899999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 280
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-16 Score=131.79 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~ 79 (477)
++.++|||+|||+++||++|+++|++||+|+ ++++.++.+ +++||||||+|.++++|++||..-+.++++.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5789999999999999999999999999999 888888877 799999999999999999999444668999998876
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+.+.
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 6544
No 281
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=4e-16 Score=127.64 Aligned_cols=78 Identities=24% Similarity=0.464 Sum_probs=64.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
....+|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++. ...+.+.+++|.|++|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcC
Confidence 46789999999999999999999999999999999874 7899999999999998543 22356789999999999
Q ss_pred CCCC
Q 011796 183 PKEF 186 (477)
Q Consensus 183 ~k~~ 186 (477)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8764
No 282
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=132.38 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCcccceeecCCCCC-CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC---CccCCeEEE
Q 011796 102 PGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVE 177 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~---~~l~Gr~l~ 177 (477)
..+.++|||+|||++ +||+||+++|++||+|++|+|++ .||||||+|+++++|++|++.++ .+|+||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 99999999999999999999974 37899999999999999999764 469999999
Q ss_pred EEEcCCCCCC
Q 011796 178 VKRAVPKEFS 187 (477)
Q Consensus 178 V~~a~~k~~~ 187 (477)
|.++.++...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876643
No 283
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=126.59 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~ 81 (477)
+..++|||+|||+++||++|+++|++||+|++| +.++.+++ ||||+|.++++|++|| ++.+.|++++|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 467899999999999999999999999999987 56666665 9999999999999999 99999999999999887
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6643
No 284
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.3e-15 Score=140.84 Aligned_cols=86 Identities=47% Similarity=0.819 Sum_probs=78.2
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a 181 (477)
+...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.+.+.|+++.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 45778999999999999999999999999999999999999999999999999999999999999669999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
.++...
T Consensus 90 ~~~~~~ 95 (196)
T 1l3k_A 90 VSREDS 95 (196)
T ss_dssp CC----
T ss_pred cCcccc
Confidence 876543
No 285
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=126.91 Aligned_cols=79 Identities=25% Similarity=0.519 Sum_probs=69.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCc-EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~--~~l~Gr~l~V~ 179 (477)
...++|||+|||+++|+++|+++|++||. |+.+.+. +++||||+|+++++|++||+.++ ++|++++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 5655553 37899999999999999999776 68999999999
Q ss_pred EcCCCCCCC
Q 011796 180 RAVPKEFSP 188 (477)
Q Consensus 180 ~a~~k~~~~ 188 (477)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876543
No 286
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-16 Score=127.77 Aligned_cols=78 Identities=33% Similarity=0.635 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEEEEeecCC
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a~~ 82 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|++|+...+.+.+++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 56899999999999999999999999999999999864 7899999999999999877545677999999999988
Q ss_pred cch
Q 011796 83 RDD 85 (477)
Q Consensus 83 ~~~ 85 (477)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 287
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=134.46 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lr----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
...++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.+.++|++|+ +++..|.+++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999876 6999999999988864 5789999999999999999999 899999999999
Q ss_pred EeecCCcchhhh
Q 011796 77 AKKAVPRDDQNM 88 (477)
Q Consensus 77 V~~a~~~~~~~~ 88 (477)
|+++.++.....
T Consensus 104 V~~a~~~~~~~~ 115 (127)
T 2a3j_A 104 ITFSETPQSQVA 115 (127)
T ss_dssp EEECCCCCHHHH
T ss_pred EEEccCcchhcc
Confidence 999998766543
No 288
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=5.2e-16 Score=132.52 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
...++|||+|||+++++++|+++|++|| +|+.|+|+.+ +++|||||+|.++++|++|| +++.+|++++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 9999998643 47899999999999999999 899999999999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-16 Score=132.88 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--Hc--CCccCCeEEEE
Q 011796 3 SDLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEA 77 (477)
Q Consensus 3 ~d~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~l~V 77 (477)
...++|||+|||++ +||++|+++|++||+|++|+|++ +|+||||+|.++++|++|+ ++ ...|++|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 46789999999998 99999999999999999999974 4789999999999999999 44 56799999999
Q ss_pred eecCCcch
Q 011796 78 KKAVPRDD 85 (477)
Q Consensus 78 ~~a~~~~~ 85 (477)
.++..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987654
No 290
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.3e-15 Score=143.99 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=77.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ +.+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 356799999999999999999999999999999999999999999999999999999999999988 8999999999998
Q ss_pred CCCC
Q 011796 182 VPKE 185 (477)
Q Consensus 182 ~~k~ 185 (477)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 291
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=123.00 Aligned_cols=74 Identities=23% Similarity=0.481 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--H-cCCccCCeEEEEe
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAK 78 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-~~~~i~Gr~l~V~ 78 (477)
+.+.++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ + +.+.|++++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999863 689999999999999999 5 8899999999999
Q ss_pred ecC
Q 011796 79 KAV 81 (477)
Q Consensus 79 ~a~ 81 (477)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.5e-16 Score=129.14 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=70.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++++++|+++|++||.|++|+|+ ++++||||+|++.++|++|++.++ +.|++++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346799999999999999999999999999999998 357899999999999999999888 8999999999999
Q ss_pred CCC
Q 011796 182 VPK 184 (477)
Q Consensus 182 ~~k 184 (477)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 293
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-15 Score=122.98 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=70.0
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|| ++|+++|+++|++||+|++|+|. ++++||||+|+++++|++||+.++ +.|++++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999995 457899999999999999999988 8999999999999
Q ss_pred CCCCCC
Q 011796 182 VPKEFS 187 (477)
Q Consensus 182 ~~k~~~ 187 (477)
+++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887654
No 294
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=8.1e-16 Score=142.02 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||+++++++|+++|++||+|++|.|+.++ +++++|||||+|.++++|++|| ++...|++++|+|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999999998 7999999999999999999999 79999999999999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
+...
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 7644
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.4e-15 Score=128.86 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+ +|||||+|.+.++|++|+ +++..|++++|.|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3578999999999999999999999999999999998 689999999999999999 899999999999999
Q ss_pred cCCcch
Q 011796 80 AVPRDD 85 (477)
Q Consensus 80 a~~~~~ 85 (477)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987643
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=6.1e-16 Score=127.69 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lr----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~ 76 (477)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++ ++++++||||+|.++++|++|+ +++..|.+++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 578999999999999999999 9999999999999874 4778999999999999999999 899999999999
Q ss_pred EeecCCcchh
Q 011796 77 AKKAVPRDDQ 86 (477)
Q Consensus 77 V~~a~~~~~~ 86 (477)
|+++.++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999887554
No 297
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=124.50 Aligned_cols=75 Identities=23% Similarity=0.484 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
..+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++.+.|++++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999843 9999999999999999 899999999999999
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+.++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 298
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.2e-16 Score=126.64 Aligned_cols=79 Identities=25% Similarity=0.498 Sum_probs=69.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~ 182 (477)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|++|+.. ...+++++|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999999865 689999999999999876543 357799999999999
Q ss_pred CCCCC
Q 011796 183 PKEFS 187 (477)
Q Consensus 183 ~k~~~ 187 (477)
+++..
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 299
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.4e-15 Score=124.85 Aligned_cols=75 Identities=21% Similarity=0.457 Sum_probs=69.5
Q ss_pred CcccceeecCCCC-CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
...++|||+|||+ ++++++|+++|++||.|++|+|. +|||||+|+++++|++|++.++ ..|++++|+|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4678999999998 99999999999999999999993 7899999999999999999888 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98653
No 300
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.1e-15 Score=124.37 Aligned_cols=75 Identities=12% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
+..++|||+|||++++|++|+++|++| +|++|+|. ++||||||+|.++++|++|+ ++...|++++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567999999999999999999999999 99999984 67899999999999999999 9999999999999998
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 301
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=124.50 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++|+++|+++|++| |+|++|+++ |+||||+|.++++|++|+ ++.+.|++++|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 999998875 469999999999999999 89999999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 302
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.4e-16 Score=127.80 Aligned_cols=76 Identities=21% Similarity=0.431 Sum_probs=69.9
Q ss_pred CcccceeecCCCC-CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
.+.++|||+|||+ ++|+++|+++|++||+|++|+|. ++||||+|+++++|++||+.++ ..|.+++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999998 99999999999999999999995 6799999999999999999887 899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 303
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=130.92 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+++.++|||+|||+++++++|+++|++||+|++|.|++ +++||||+|.++++|++|+ ++...|++++|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999874 5689999999999999999 899999999999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8654
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=126.46 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEA-VIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v-~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
..++|||+|||+++|+++|+++|++||+|++| .|+.++.+++ |||+|.++++|++|+ ++.+.|++++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 5888876543 999999999999999 9999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.+++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8874
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=5.4e-16 Score=127.87 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
+.+.++|||+|||+++|+++|+++|++||+|..+ ..+++++|||||+|.++++|++|+ ++.+.|++++|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999887655 335889999999999999999999 788999999999999
Q ss_pred cCCcc
Q 011796 80 AVPRD 84 (477)
Q Consensus 80 a~~~~ 84 (477)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98764
No 306
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=7.7e-16 Score=127.06 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=74.0
Q ss_pred CcccceeecCCCCCCCHHHHH----HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
...++|||+|||+++++++|+ ++|++||.|++|+|++ +++++|||||+|+++++|++|++.++ ..|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999 9999999999999874 36778999999999999999999887 899999999
Q ss_pred EEEcCCCCC
Q 011796 178 VKRAVPKEF 186 (477)
Q Consensus 178 V~~a~~k~~ 186 (477)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998654
No 307
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=5e-16 Score=124.29 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=66.0
Q ss_pred cceeecCCCCCC------CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCe-EEE
Q 011796 106 KKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVE 177 (477)
Q Consensus 106 ~~lfV~nLp~~~------teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr-~l~ 177 (477)
++|||+|||+.+ |+++|+++|++||+|++|+|+ +.+++++|||||+|+++++|++||+.++ ..|+++ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999988 4678999999999999999999999988 899999 887
Q ss_pred E
Q 011796 178 V 178 (477)
Q Consensus 178 V 178 (477)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 308
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=140.00 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=78.3
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||.|||+++++++|+++|++||+|+.|.|++++ +++++|||||+|+++++|++||+.++ +.|++++|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999998 89999999999999999999999888 899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
|.+...
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 986543
No 309
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.8e-16 Score=131.20 Aligned_cols=80 Identities=24% Similarity=0.495 Sum_probs=71.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT---QRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~t---g~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
...++|||+|||+++|+++|+++|++||+|+ +.++.++.+ +++||||||+|+++++|++||+.+ +.|+|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4578999999999999999999999999999 889888877 699999999999999999999988 45888888887
Q ss_pred EcCCC
Q 011796 180 RAVPK 184 (477)
Q Consensus 180 ~a~~k 184 (477)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 65543
No 310
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9e-16 Score=125.88 Aligned_cols=76 Identities=25% Similarity=0.453 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcC-CccCCeEEEEe
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMIDGRTVEAK 78 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~-~~i~Gr~l~V~ 78 (477)
.+.++|||+|||+++||++|+++|++||+ |..+.++ +++||||+|.++++|++|+ ++. +.|++++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 56799999999999999999999999999 6655553 4789999999999999999 888 99999999999
Q ss_pred ecCCcch
Q 011796 79 KAVPRDD 85 (477)
Q Consensus 79 ~a~~~~~ 85 (477)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987644
No 311
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.7e-15 Score=123.71 Aligned_cols=73 Identities=26% Similarity=0.488 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
.+.++|||+|||+ ++++++|+++|++||+|++|+|. +|||||+|.++++|++|+ +++..|++++|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5789999999998 99999999999999999999983 689999999999999999 899999999999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
+.++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=1.8e-15 Score=129.08 Aligned_cols=81 Identities=12% Similarity=0.270 Sum_probs=73.9
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
...++|||+|||+++|+++|+++|++||.|++|.|+++. +++|||||+|.+.++|++|++.++ ..|++++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 457899999999999999999999999999999999764 458999999999999999999887 8999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 86543
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-15 Score=125.33 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEee
Q 011796 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (477)
Q Consensus 3 ~d~~~LfVgnLP~-~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~ 79 (477)
.+.++|||+|||+ ++++++|+++|++||+|++|+|. |+||||+|.++++|++|+ ++...|.+++|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5789999999998 99999999999999999999994 689999999999999999 899999999999999
Q ss_pred cCCcchh
Q 011796 80 AVPRDDQ 86 (477)
Q Consensus 80 a~~~~~~ 86 (477)
+.++...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9776543
No 314
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=4.5e-15 Score=133.10 Aligned_cols=82 Identities=22% Similarity=0.435 Sum_probs=77.5
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++ ..|.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4689999999999999999999999999999999999899999999999999999999999877 899999999999987
Q ss_pred CCC
Q 011796 184 KEF 186 (477)
Q Consensus 184 k~~ 186 (477)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 315
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.1e-15 Score=133.23 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|||+++|+++|+++|++||+|++++|++++.+++++|||||+|.++++|++|+ +++..|.+++|+|+++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred CC
Q 011796 81 VP 82 (477)
Q Consensus 81 ~~ 82 (477)
.+
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 316
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.3e-15 Score=139.01 Aligned_cols=82 Identities=12% Similarity=0.249 Sum_probs=75.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
..++|||+|||+++|+++|+++|++||+|+.|+|++++. ++++|||||+|+++++|++||+.+++.|+|++|+|.++++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 457899999999999999999999999999999999875 8899999999999999999999888999999999999876
Q ss_pred CCC
Q 011796 184 KEF 186 (477)
Q Consensus 184 k~~ 186 (477)
...
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 543
No 317
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.1e-15 Score=137.64 Aligned_cols=80 Identities=38% Similarity=0.742 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++...|.+++|+|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 3679999999999999999999999999999999999989999999999999999999999 888899999999999988
Q ss_pred c
Q 011796 83 R 83 (477)
Q Consensus 83 ~ 83 (477)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 318
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.4e-15 Score=127.37 Aligned_cols=73 Identities=21% Similarity=0.463 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 4 DLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 4 d~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
..++|||+|||++ +||++|+++|++||+|++|+| +++||||+|.++++|++|+ ++.+.|++++|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3489999999999 999999999999999999999 5789999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 319
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=3.8e-15 Score=134.04 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=78.6
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++ ..|.+++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999777 89999999999998
Q ss_pred CCCCC
Q 011796 183 PKEFS 187 (477)
Q Consensus 183 ~k~~~ 187 (477)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 320
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=6.7e-15 Score=133.61 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC--eEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G--r~l~V 178 (477)
+....+|||+||++.+|+++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++.++ .+|.+ ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 345678999999999999999999999999999999754 258999999999999999999999 88865 99999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
+++++++.
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998754
No 321
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=4.8e-15 Score=139.06 Aligned_cols=83 Identities=20% Similarity=0.532 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ +++..|++++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87743
No 322
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=2.6e-15 Score=134.30 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++|||||+|.++++|++|+ ++.+.|.+++|.|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45789999999999999999999999999999999886 5899999999999999999 8999999999999999
Q ss_pred CCcc
Q 011796 81 VPRD 84 (477)
Q Consensus 81 ~~~~ 84 (477)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=1.5e-15 Score=130.07 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeE-----E
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRT-----V 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~-----l 75 (477)
...++|||+|||+++||++|+++|++||+|++|.|+.+ +||||+|.++++|++|| ++.++|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999876 79999999999999999 8999999998 7
Q ss_pred EEeecCCcc
Q 011796 76 EAKKAVPRD 84 (477)
Q Consensus 76 ~V~~a~~~~ 84 (477)
+|+.+.++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777766543
No 324
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=127.56 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=70.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++|+++|+++|++||.|++|.|++ .++||||+|++.++|++||+.++ +.|++++|.|.+|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999874 46799999999999999999888 89999999999998
Q ss_pred CCCC
Q 011796 183 PKEF 186 (477)
Q Consensus 183 ~k~~ 186 (477)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6544
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=3.1e-15 Score=121.67 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=68.9
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
..++|||+|||+++++++|+++|++| .|++|+|. ++||||||+|+++++|++|++.++ .+|++++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999984 578999999999999999999888 89999999999986
Q ss_pred CCC
Q 011796 183 PKE 185 (477)
Q Consensus 183 ~k~ 185 (477)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.4e-15 Score=119.87 Aligned_cols=72 Identities=21% Similarity=0.529 Sum_probs=66.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCc
Q 011796 2 ESDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHM 69 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~tee~Lre~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~ 69 (477)
.++.++|||+|||+++++++|+++|++| | +|.+++++++ |+||||+|.++++|++|+ ++++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3578999999999999999999999999 8 8999998754 689999999999999999 99999
Q ss_pred cCCeEEEEee
Q 011796 70 IDGRTVEAKK 79 (477)
Q Consensus 70 i~Gr~l~V~~ 79 (477)
|++++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 327
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=6.3e-15 Score=136.39 Aligned_cols=83 Identities=23% Similarity=0.498 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ +++..|++++|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999999999988999999999999999999999 8999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88643
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.3e-15 Score=128.70 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=70.5
Q ss_pred cEEEEcCC----CccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHH----HcCCc
Q 011796 6 GKLFIGGI----SWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD----PAV----AERVI----MDKHM 69 (477)
Q Consensus 6 ~~LfVgnL----P~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~----~e~----A~kAl----~~~~~ 69 (477)
++|||+|| ||+++|++|+++|++||+|.+|+++.|+.|++++|||||+|.| +++ |.+|+ ++...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 77776 38889
Q ss_pred cCCeEEEEeecCCcch
Q 011796 70 IDGRTVEAKKAVPRDD 85 (477)
Q Consensus 70 i~Gr~l~V~~a~~~~~ 85 (477)
|+|++|+|+....-..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999997765433
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.4e-14 Score=126.79 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHhcC-CccCC--eEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~-aFVeF~s~e~a~~Al~~~~-~~l~G--r~l~V 178 (477)
.+..+|||+||++.+|+++|+++|++||+|++|+|+++ .++| |||+|+++++|++|++.++ .+|.+ ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45668899999999999999999999999999998864 2678 9999999999999999999 89988 99999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
.++++++.
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99998754
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.6e-15 Score=126.01 Aligned_cols=78 Identities=15% Similarity=0.299 Sum_probs=69.4
Q ss_pred Ccccceee--cCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc-----CCe
Q 011796 103 GRTKKIFV--GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-----NGK 174 (477)
Q Consensus 103 ~~~~~lfV--~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l-----~Gr 174 (477)
.++++||| +||++++||++|+++|++||+|++|.|+.+ ||||||+|+++++|++|++.++ ++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 669999999999999999999999988643 7899999999999999999999 887 789
Q ss_pred EEEEEEcCCCCC
Q 011796 175 MVEVKRAVPKEF 186 (477)
Q Consensus 175 ~l~V~~a~~k~~ 186 (477)
+|.|.+++..+.
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999985543
No 331
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=7.9e-15 Score=132.63 Aligned_cols=78 Identities=24% Similarity=0.537 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 3689999999999999999999999999999999999988999999999999999999999 89999999999999873
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=120.01 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|| ++|+++|+++|++||+|++|+|. ++++||||+|.++++|++|| ++.+.|.+++|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 99999999999999999999984 56789999999999999999 7999999999999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=135.21 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAV--I---MRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~--i---~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l 75 (477)
...++|||+|||+++|+++|+++|++||+|+.|. + ++...+++++|||||+|.++++|++|+ ++...|.+++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999988741 1 111236889999999999999999999 89999999999
Q ss_pred EEeecCCcch
Q 011796 76 EAKKAVPRDD 85 (477)
Q Consensus 76 ~V~~a~~~~~ 85 (477)
.|+++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999977543
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.5e-15 Score=134.73 Aligned_cols=85 Identities=25% Similarity=0.300 Sum_probs=72.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV--V---MYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~--i---~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l 176 (477)
...++|||+|||+++|+++|+++|++||.|+.|. + ++...+++++|||||+|.+.++|++||+.++ ..|++++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999987641 1 1112357899999999999999999999888 89999999
Q ss_pred EEEEcCCCCCC
Q 011796 177 EVKRAVPKEFS 187 (477)
Q Consensus 177 ~V~~a~~k~~~ 187 (477)
.|.+|+++..+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 335
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=7.4e-15 Score=153.93 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~ 81 (477)
..++|||+|||++||+++|+++|++||+|+.|+|+.++.|++++|||||+|.++++|++|| |+.+.|.+++|.|+++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4589999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7654
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.2e-14 Score=131.83 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=69.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCC--eEEEEeec
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G--r~l~V~~a 80 (477)
-.+|||+|||+++||++|+++|++||+|++|+|+.+ ++++||||+|.++++|++|+ +++..|.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999999754 35789999999999999999 89999965 99999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 88743
No 337
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.2e-14 Score=123.70 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=69.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHhcC-CccCC--eEEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~-aFVeF~s~e~a~~Al~~~~-~~l~G--r~l~V 178 (477)
....+|||.||++.+|+++|+++|++||.|++|+|++. +|| |||+|+++++|++|++.++ .+|.+ ++|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 44556789999999999999999999999999999752 276 9999999999999999998 88987 69999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
.+|+++..
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99998764
No 338
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9e-15 Score=126.71 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=69.1
Q ss_pred cceeecCC----CCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--hcC-Cc
Q 011796 106 KKIFVGGL----ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----EEA----VDRVLH--KTF-HE 170 (477)
Q Consensus 106 ~~lfV~nL----p~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s----~e~----a~~Al~--~~~-~~ 170 (477)
++|||+|| |+.++|++|+++|++||+|++|+++.|++|++++|||||+|.+ +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999995 322 788888 556 79
Q ss_pred cCCeEEEEEEcC
Q 011796 171 LNGKMVEVKRAV 182 (477)
Q Consensus 171 l~Gr~l~V~~a~ 182 (477)
|+|++|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.1e-14 Score=126.18 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=69.7
Q ss_pred CCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
....++|||+|| ++|+++|+++|++||+|++|+|. +++|||||+|++.++|++||+.++ .+|++++|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 79999999999999999999996 467899999999999999999888 899999999999
Q ss_pred cCCCCC
Q 011796 181 AVPKEF 186 (477)
Q Consensus 181 a~~k~~ 186 (477)
++++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987754
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2e-14 Score=115.98 Aligned_cols=71 Identities=20% Similarity=0.511 Sum_probs=65.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhc----C-------cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Cc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQF----G-------TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HE 170 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~----G-------~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~ 170 (477)
...++|||+|||+++|+++|+++|++| | +|++|+++++ |+||||+|+++++|++|+ .++ +.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 9999999855 689999999999999999 777 89
Q ss_pred cCCeEEEEEE
Q 011796 171 LNGKMVEVKR 180 (477)
Q Consensus 171 l~Gr~l~V~~ 180 (477)
|++++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=2e-14 Score=134.47 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeEEEEeecCC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~l~V~~a~~ 82 (477)
+.++|||+|||+++|+++|+++|++||+|++|+|+++.. +++||||||+|.++++|++|+ +..+.|+|++|.|+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999999875 899999999999999999999 556799999999998766
Q ss_pred cc
Q 011796 83 RD 84 (477)
Q Consensus 83 ~~ 84 (477)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=4e-14 Score=123.87 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=68.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHH--HcCCccCC--eEEEEeec
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGF-GFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~-aFVeF~~~e~A~kAl--~~~~~i~G--r~l~V~~a 80 (477)
-+|||+|||+++||++|+++|++||+|++|+|+.+ .++| |||+|.++++|++|+ +++..|.+ ++|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46779999999999999999999999999998864 3678 999999999999999 99999988 99999999
Q ss_pred CCcch
Q 011796 81 VPRDD 85 (477)
Q Consensus 81 ~~~~~ 85 (477)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 88743
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=5.3e-14 Score=118.80 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=72.3
Q ss_pred CcccceeecCCCC-----CCCHHHHHHHhhhcCcEEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 011796 103 GRTKKIFVGGLAS-----TVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (477)
Q Consensus 103 ~~~~~lfV~nLp~-----~~teedL~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~ 175 (477)
.++++|+|.||.. +.+++||+++|++||+|++|+|++++.+ ++++|||||+|+++++|++|++.++ ..|+||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3577899999952 2378999999999999999999998764 6889999999999999999999998 8999999
Q ss_pred EEEEEcCCC
Q 011796 176 VEVKRAVPK 184 (477)
Q Consensus 176 l~V~~a~~k 184 (477)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=4.9e-14 Score=118.97 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCc-----cCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHH--HcCCccCCe
Q 011796 2 ESDLGKLFIGGISW-----DTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVI--MDKHMIDGR 73 (477)
Q Consensus 2 e~d~~~LfVgnLP~-----~~tee~Lre~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr 73 (477)
...+++|+|+||.. +.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|+ +|++.|++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999973 3478999999999999999999998754 689999999999999999999 999999999
Q ss_pred EEEEeecCCc
Q 011796 74 TVEAKKAVPR 83 (477)
Q Consensus 74 ~l~V~~a~~~ 83 (477)
+|.|.++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999764
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=123.48 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=66.0
Q ss_pred CCCcEEEE--cCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc-----CCe
Q 011796 3 SDLGKLFI--GGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI-----DGR 73 (477)
Q Consensus 3 ~d~~~LfV--gnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i-----~Gr 73 (477)
...++||| +|||+++||++|+++|++||+|++|.|+. .||||||+|.++++|++|+ +|.++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45789999 66999999999999999999999998864 3789999999999999999 888887 688
Q ss_pred EEEEeecCCc
Q 011796 74 TVEAKKAVPR 83 (477)
Q Consensus 74 ~l~V~~a~~~ 83 (477)
+|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 8888887654
No 346
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=3.8e-14 Score=128.18 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=74.5
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHhcC-CccC---CeEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ--RPRGFGFITYDSEEAVDRVLHKTF-HELN---GKMVE 177 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg--~~rG~aFVeF~s~e~a~~Al~~~~-~~l~---Gr~l~ 177 (477)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|++.++ ..+. .++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999887 899999999999999999999887 5554 68888
Q ss_pred EEEcCCCCC
Q 011796 178 VKRAVPKEF 186 (477)
Q Consensus 178 V~~a~~k~~ 186 (477)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876654
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=9.2e-14 Score=120.77 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=65.9
Q ss_pred EEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHH--HcCCccCC--eEEEEeecC
Q 011796 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGF-GFVVFADPAVAERVI--MDKHMIDG--RTVEAKKAV 81 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~-aFVeF~~~e~A~kAl--~~~~~i~G--r~l~V~~a~ 81 (477)
.|||+|||+++|+++|+++|++||+|++|+|+.. +|| |||+|.++++|++|+ |++..|.+ ++|+|++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999752 276 999999999999999 99999987 699999998
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 8753
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=116.28 Aligned_cols=73 Identities=11% Similarity=0.226 Sum_probs=64.8
Q ss_pred cccc-eeecCCCCCCCHHH----HHHHhhhc-CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 011796 104 RTKK-IFVGGLASTVTESD----FKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (477)
Q Consensus 104 ~~~~-lfV~nLp~~~teed----L~~~F~~~-G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l 176 (477)
++.+ |||.|||+.+++++ |+++|++| |+|.+| ++ |+|||+|++.++|++|++.++ .+|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599999 22 899999999999999999988 99999999
Q ss_pred EEEEcCCCCC
Q 011796 177 EVKRAVPKEF 186 (477)
Q Consensus 177 ~V~~a~~k~~ 186 (477)
+|.+|+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999997765
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=6.6e-14 Score=132.11 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred cccceeecCCC-CCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 011796 104 RTKKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (477)
Q Consensus 104 ~~~~lfV~nLp-~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a 181 (477)
..++|||+||| +.+|+++|+++|++||.|++|+|++++ ||||||+|+++++|++||+.++ ++|.+++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 899999999999999999999998753 7899999999999999999888 9999999999999
Q ss_pred CCCCC
Q 011796 182 VPKEF 186 (477)
Q Consensus 182 ~~k~~ 186 (477)
+.+..
T Consensus 78 ~~~~~ 82 (205)
T 3tyt_A 78 KQPAI 82 (205)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 76543
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=6.6e-14 Score=121.15 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
.+.++|||+|| ++||++|+++|++||+|++|+|+ ++|+||||+|.+.++|++|+ ++...|.+++|.|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 79999999999999999999996 46889999999999999999 8999999999999999
Q ss_pred CCcchh
Q 011796 81 VPRDDQ 86 (477)
Q Consensus 81 ~~~~~~ 86 (477)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 887543
No 351
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=113.99 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCcE-EEEcCCCccCcHHH----HHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEE
Q 011796 4 DLGK-LFIGGISWDTDEER----LKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (477)
Q Consensus 4 d~~~-LfVgnLP~~~tee~----Lre~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l 75 (477)
++.+ |||+|||+++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|+ |+...|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999998 55899999 599888 23 99999999999999999 99999999999
Q ss_pred EEeecCCcchh
Q 011796 76 EAKKAVPRDDQ 86 (477)
Q Consensus 76 ~V~~a~~~~~~ 86 (477)
+|.+++.+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999887653
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-13 Score=115.18 Aligned_cols=83 Identities=12% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCcccceeecCCCCCC-----------CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C
Q 011796 102 PGRTKKIFVGGLASTV-----------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H 169 (477)
Q Consensus 102 ~~~~~~lfV~nLp~~~-----------teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~ 169 (477)
+..+++|+|.||.... ++++|+++|++||+|++|.| .|+ .++|||||+|+++++|++|++.++ +
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3568899999994433 26899999999999999966 554 379999999999999999999999 8
Q ss_pred ccCCeEEEEEEcCCCCCCC
Q 011796 170 ELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 170 ~l~Gr~l~V~~a~~k~~~~ 188 (477)
.|++++|+|.++.++....
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 9999999999999876543
No 353
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=8.8e-14 Score=126.36 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeec
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a 80 (477)
...++|||+|||+++|+++|+++|++||+|..+ ..+++++|||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356899999999999999999999999987655 456899999999999999999999 8999999999999999
Q ss_pred CCc
Q 011796 81 VPR 83 (477)
Q Consensus 81 ~~~ 83 (477)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.4e-13 Score=132.57 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCccC---------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCcc
Q 011796 2 ESDLGKLFIGGISWDT---------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI 70 (477)
Q Consensus 2 e~d~~~LfVgnLP~~~---------tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i 70 (477)
+.+.++|||+|||+++ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|+ |+...|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3568999999999998 8999999999999999999985 4789999999999999999 999998
Q ss_pred ------------CCeEEEEeecCCcch
Q 011796 71 ------------DGRTVEAKKAVPRDD 85 (477)
Q Consensus 71 ------------~Gr~l~V~~a~~~~~ 85 (477)
.++.|.|+|+.++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.3e-13 Score=133.41 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=74.0
Q ss_pred CcccceeecCCCCCCCHHHHH----HHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
...++|||+|||+++|+++|+ ++|++||.|++|+|++ ++++||||||+|.++++|++||+.++ ..|.+++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467899999999999999977 8999999999999986 57789999999999999999998888 899999999
Q ss_pred EEEcCCCCC
Q 011796 178 VKRAVPKEF 186 (477)
Q Consensus 178 V~~a~~k~~ 186 (477)
|.+++.+..
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999976553
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=108.54 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCCCCCC
Q 011796 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188 (477)
Q Consensus 115 ~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k~~~~ 188 (477)
..++|++|+++|++||+|++|+|+ .++||||||+|+++++|++||+.+ ..+.+++|+|++++++...+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 579999999999999999999998 367999999999999999999984 55789999999998776543
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.40 E-value=4e-13 Score=128.33 Aligned_cols=78 Identities=14% Similarity=0.329 Sum_probs=72.2
Q ss_pred CcccceeecCCCC-CCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 011796 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (477)
Q Consensus 103 ~~~~~lfV~nLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~ 180 (477)
...++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.++++|++||+.++ ..|.+++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999875 7899999999999999999777 899999999999
Q ss_pred cCCCC
Q 011796 181 AVPKE 185 (477)
Q Consensus 181 a~~k~ 185 (477)
++++.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98664
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=2.7e-13 Score=130.65 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=68.8
Q ss_pred CcccceeecCCCCCC---------CHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc-
Q 011796 103 GRTKKIFVGGLASTV---------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL- 171 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~---------teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l- 171 (477)
...++|||+||++.+ +|++|+++|++||+|++|+|+.+ ||||||+|+++++|++|++.|+ +.|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 79999999999999999999854 7899999999999999999988 778
Q ss_pred -----------CCeEEEEEEcCCCCC
Q 011796 172 -----------NGKMVEVKRAVPKEF 186 (477)
Q Consensus 172 -----------~Gr~l~V~~a~~k~~ 186 (477)
.+++|.|++|+++..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.7e-13 Score=112.51 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCccC-----------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCc
Q 011796 3 SDLGKLFIGGISWDT-----------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHM 69 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~-----------tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~ 69 (477)
..+++|+|+||.... ++++|+++|++||+|++|.| .++ .++|||||+|.++++|++|+ ++.+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999994432 36899999999999999966 554 37999999999999999999 89999
Q ss_pred cCCeEEEEeecCCcch
Q 011796 70 IDGRTVEAKKAVPRDD 85 (477)
Q Consensus 70 i~Gr~l~V~~a~~~~~ 85 (477)
|++++|.|+++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987644
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=7e-13 Score=111.86 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=70.4
Q ss_pred cccceeecCC--CCCCC--------HHHHHHHhhhcCcEEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHhcC-Cc
Q 011796 104 RTKKIFVGGL--ASTVT--------ESDFKKYFDQFGTITDVVVMYDHNT--QRPRGFGFITYDSEEAVDRVLHKTF-HE 170 (477)
Q Consensus 104 ~~~~lfV~nL--p~~~t--------eedL~~~F~~~G~V~~v~i~~d~~t--g~~rG~aFVeF~s~e~a~~Al~~~~-~~ 170 (477)
+++.|.|.|+ |.++. ++||+++|++||+|++|+|++++.+ .+++|+|||+|+++++|++|++.++ ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5778888887 44443 4799999999999999999998765 4689999999999999999999999 99
Q ss_pred cCCeEEEEEEcCCC
Q 011796 171 LNGKMVEVKRAVPK 184 (477)
Q Consensus 171 l~Gr~l~V~~a~~k 184 (477)
|+||+|+|.++.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=107.22 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCC-------ccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHcCCccCCeEE
Q 011796 3 SDLGKLFIGGIS-------WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTV 75 (477)
Q Consensus 3 ~d~~~LfVgnLP-------~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~l 75 (477)
...++|.|.-.+ .+++|++|+++|++||+|++|+|+ +++||||||+|.++++|++|+.....+.+++|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l 82 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPL 82 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBC
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeE
Confidence 346788888665 348999999999999999999998 36899999999999999999966677889999
Q ss_pred EEeecCCcc
Q 011796 76 EAKKAVPRD 84 (477)
Q Consensus 76 ~V~~a~~~~ 84 (477)
+|+++.++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988764
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.2e-12 Score=110.40 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCcEEEEcCC--CccC--------cHHHHHHHHhccCCeeEEEEeecCCC--CCcccEEEEEeCCHHHHHHHH--HcCC
Q 011796 3 SDLGKLFIGGI--SWDT--------DEERLKEYFSRYGEVVEAVIMRDRAT--GRARGFGFVVFADPAVAERVI--MDKH 68 (477)
Q Consensus 3 ~d~~~LfVgnL--P~~~--------tee~Lre~F~~~G~V~~v~i~~d~~t--g~srG~aFVeF~~~e~A~kAl--~~~~ 68 (477)
..++.|.|+|+ |.++ .+++|+++|++||+|++|+|++++.+ .+++||+||+|.++++|++|+ +|+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 4444 34799999999999999999988764 468999999999999999999 9999
Q ss_pred ccCCeEEEEeecCCcc
Q 011796 69 MIDGRTVEAKKAVPRD 84 (477)
Q Consensus 69 ~i~Gr~l~V~~a~~~~ 84 (477)
.+++|+|.|.+..+..
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999886653
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=1.9e-12 Score=126.09 Aligned_cols=82 Identities=32% Similarity=0.413 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--H-cCCccC---CeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMID---GRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-~~~~i~---Gr~l~ 76 (477)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+ + +...+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 456899999999999999999999999999999999994 7999999999999999999999 5 454544 99999
Q ss_pred EeecCCcch
Q 011796 77 AKKAVPRDD 85 (477)
Q Consensus 77 V~~a~~~~~ 85 (477)
|+++.+...
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999987643
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=120.90 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC-CeEEEEee
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTVEAKK 79 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~l~V~~ 79 (477)
..++|||+|||+++++++|+++|++|| +|++|+|+++. +++|||+|.++++|++|+ +++..|. +++|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 378999999999999999999999999 99999997642 689999999999999999 9999999 99999999
Q ss_pred cCCc
Q 011796 80 AVPR 83 (477)
Q Consensus 80 a~~~ 83 (477)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8764
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=5.1e-13 Score=112.45 Aligned_cols=71 Identities=15% Similarity=0.381 Sum_probs=62.7
Q ss_pred ecCCCCCCCHHHHHHHh------------hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 011796 110 VGGLASTVTESDFKKYF------------DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (477)
Q Consensus 110 V~nLp~~~teedL~~~F------------~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l 176 (477)
+.+||+.+++++|+++| ++||+|++|+|++++. +++||||||+|+++++|++|++.++ +.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55777788887777666 9999999999998876 6899999999999999999999988 89999999
Q ss_pred EEEEc
Q 011796 177 EVKRA 181 (477)
Q Consensus 177 ~V~~a 181 (477)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=2.8e-12 Score=110.44 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=69.6
Q ss_pred cccceeecCCC--CC---CCHHHHHHHhhhcCcEEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHhcC-CccCC
Q 011796 104 RTKKIFVGGLA--ST---VTESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDRVLHKTF-HELNG 173 (477)
Q Consensus 104 ~~~~lfV~nLp--~~---~teedL~~~F~~~G~V~~v~i~~d~~----tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G 173 (477)
++++|+|.|+- .+ -.++||+++|++||+|++|+|++++. +.+++|++||+|+++++|++|++.++ ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56788899873 22 24689999999999999999999865 45778999999999999999999999 99999
Q ss_pred eEEEEEEcCC
Q 011796 174 KMVEVKRAVP 183 (477)
Q Consensus 174 r~l~V~~a~~ 183 (477)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=8.9e-13 Score=110.99 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=61.9
Q ss_pred EcCCCccCcHHHHHHHH------------hccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEE
Q 011796 10 IGGISWDTDEERLKEYF------------SRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (477)
Q Consensus 10 VgnLP~~~tee~Lre~F------------~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l 75 (477)
+.+||+++++++|+++| ++||+|++|+|++++. +++||||||+|.++++|++|+ +|++.|++|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777888777666 9999999999998875 789999999999999999999 99999999999
Q ss_pred EEeec
Q 011796 76 EAKKA 80 (477)
Q Consensus 76 ~V~~a 80 (477)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=4.5e-12 Score=109.17 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCcEEEEcCCC--cc---CcHHHHHHHHhccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHH--HcCCccCC
Q 011796 4 DLGKLFIGGIS--WD---TDEERLKEYFSRYGEVVEAVIMRDRA----TGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (477)
Q Consensus 4 d~~~LfVgnLP--~~---~tee~Lre~F~~~G~V~~v~i~~d~~----tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G 72 (477)
.++.|+|+|+- .+ -.++||+++|++||+|++|+|++++. +++++||+||+|.++++|++|+ +|+..+++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68899999994 22 34789999999999999999998865 4678999999999999999999 99999999
Q ss_pred eEEEEeecCCc
Q 011796 73 RTVEAKKAVPR 83 (477)
Q Consensus 73 r~l~V~~a~~~ 83 (477)
|+|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999988653
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=7.7e-11 Score=119.28 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=63.8
Q ss_pred CCcccceeecC--CCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc---CCe-
Q 011796 102 PGRTKKIFVGG--LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGK- 174 (477)
Q Consensus 102 ~~~~~~lfV~n--Lp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l---~Gr- 174 (477)
..++++|||+| |++.+||++|+++|++||+|++|+|.. .||||||+|++.++|++||+.++ +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35788999999 588999999999999999999988753 47899999999999999999999 665 345
Q ss_pred -EEEEEEcC
Q 011796 175 -MVEVKRAV 182 (477)
Q Consensus 175 -~l~V~~a~ 182 (477)
+|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56777764
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=1e-10 Score=118.31 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCCCcEEEEcC--CCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC---Ce-
Q 011796 2 ESDLGKLFIGG--ISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID---GR- 73 (477)
Q Consensus 2 e~d~~~LfVgn--LP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~---Gr- 73 (477)
+..+++|||+| |++.+||++|+++|++||+|++|+|.+ +||||||+|.++++|++|+ +|+.++. ++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45789999999 588999999999999999999887743 5799999999999999999 8888773 44
Q ss_pred -EEEEeecC
Q 011796 74 -TVEAKKAV 81 (477)
Q Consensus 74 -~l~V~~a~ 81 (477)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 45556554
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=9.5e-11 Score=100.22 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=64.9
Q ss_pred CcccceeecCCC--CC--------CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-Ccc
Q 011796 103 GRTKKIFVGGLA--ST--------VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (477)
Q Consensus 103 ~~~~~lfV~nLp--~~--------~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l 171 (477)
..++.|.|.|+= .+ -.++||+++|++||.|++|+|.++. ++|++||+|++.++|++|++.++ ..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456778888762 21 1246899999999999999997653 58999999999999999999999 899
Q ss_pred CCeEEEEEEcCCC
Q 011796 172 NGKMVEVKRAVPK 184 (477)
Q Consensus 172 ~Gr~l~V~~a~~k 184 (477)
+||+|+|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998643
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.08 E-value=3.3e-10 Score=96.82 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCcc----------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccC
Q 011796 4 DLGKLFIGGISWD----------TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (477)
Q Consensus 4 d~~~LfVgnLP~~----------~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~ 71 (477)
.++.|.|+|+=.. -.++||+++|++||+|++|+|+++. .+||+||+|.++++|++|+ +|+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677888887432 2356889999999999999997653 5899999999999999999 9999999
Q ss_pred CeEEEEeecCCcchhh
Q 011796 72 GRTVEAKKAVPRDDQN 87 (477)
Q Consensus 72 Gr~l~V~~a~~~~~~~ 87 (477)
||+|.|.++.......
T Consensus 82 GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHN 97 (114)
T ss_dssp TEECEEEEECHHHHHH
T ss_pred CEEEEEEEEcHHHHHH
Confidence 9999999987654443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.8e-09 Score=93.00 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=68.3
Q ss_pred CCCCCcccceeecCCCCC-CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHhcC---CccCC
Q 011796 99 SPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLHKTF---HELNG 173 (477)
Q Consensus 99 ~~~~~~~~~lfV~nLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s-~e~a~~Al~~~~---~~l~G 173 (477)
+....+...|+|.||++. +++++|+++|++||+|+.|.+++++. .|||+|.+ +++|++|+++++ .+|++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 334457789999999999 99999999999999999999999876 59999999 899999998874 58999
Q ss_pred eEEEEEEcC
Q 011796 174 KMVEVKRAV 182 (477)
Q Consensus 174 r~l~V~~a~ 182 (477)
..++|.+..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 988887654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.3e-09 Score=93.89 Aligned_cols=76 Identities=20% Similarity=0.097 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHH--H--cCCccCCeEEEE
Q 011796 4 DLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERVI--M--DKHMIDGRTVEA 77 (477)
Q Consensus 4 d~~~LfVgnLP~~-~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~-~e~A~kAl--~--~~~~i~Gr~l~V 77 (477)
.-+.|+|.||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ +++|++|+ + .+..|.+..+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4578999999999 99999999999999999999999876 59999999 78888888 4 467888988888
Q ss_pred eecCCcch
Q 011796 78 KKAVPRDD 85 (477)
Q Consensus 78 ~~a~~~~~ 85 (477)
+...-..+
T Consensus 91 evL~GeeE 98 (121)
T 1owx_A 91 EVLEGEVE 98 (121)
T ss_dssp EECCHHHH
T ss_pred EECCCHHH
Confidence 76654433
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=2.8e-09 Score=86.58 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=58.7
Q ss_pred ccceeecCCC----CCCCH----HHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 011796 105 TKKIFVGGLA----STVTE----SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (477)
Q Consensus 105 ~~~lfV~nLp----~~~te----edL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~ 175 (477)
..+|+|.-++ .++-+ .+|.+.|.+||+|..|+|+.|+ +||+|++.++|.+||+ ++ .++.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3456666655 22333 5799999999999999999874 8999999999999999 55 9999999
Q ss_pred EEEEEcCCC
Q 011796 176 VEVKRAVPK 184 (477)
Q Consensus 176 l~V~~a~~k 184 (477)
|+|++++|.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999864
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-08 Score=82.22 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=62.7
Q ss_pred CCcEEEEcCCC----ccCcH----HHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCeE
Q 011796 4 DLGKLFIGGIS----WDTDE----ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRT 74 (477)
Q Consensus 4 d~~~LfVgnLP----~~~te----e~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~ 74 (477)
...||+|.-+| .++.+ .+|++.|++||+|..++|+.++ +||+|.+.++|.+|+ ++...|.+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 45678887766 23333 5789999999999999999874 899999999999999 9999999999
Q ss_pred EEEeecCCcch
Q 011796 75 VEAKKAVPRDD 85 (477)
Q Consensus 75 l~V~~a~~~~~ 85 (477)
|+|+.+.+...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999987643
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=3.7e-08 Score=93.21 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCCHHHHHHHhhhcCcEEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 011796 116 TVTESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (477)
Q Consensus 116 ~~teedL~~~F~~~G~V~~v~i~~d~~----tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~~ 183 (477)
.-.+++|++.|++||.|++|+|+++.. +.+++|++||+|.++++|++|++.++ ..++||+|.|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346789999999999999999996654 44899999999999999999999999 899999999999753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.2e-08 Score=83.38 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.2
Q ss_pred cccceeecCCCCC------CCH---HHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCC
Q 011796 104 RTKKIFVGGLAST------VTE---SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG 173 (477)
Q Consensus 104 ~~~~lfV~nLp~~------~te---edL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~G 173 (477)
+..+|+|.-++.. ..+ .+|.+.|++||+|+.|+|+.|+ +||+|.+.++|.+||+ ++ .++.+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4457888877632 222 5699999999999999999884 9999999999999999 55 99999
Q ss_pred eEEEEEEcCC
Q 011796 174 KMVEVKRAVP 183 (477)
Q Consensus 174 r~l~V~~a~~ 183 (477)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=4.6e-08 Score=79.84 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCcc-----CcH----HHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCCe
Q 011796 4 DLGKLFIGGISWD-----TDE----ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGR 73 (477)
Q Consensus 4 d~~~LfVgnLP~~-----~te----e~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr 73 (477)
...||+|.-++.+ +.+ .+|++.|++||+|+.++|+.++ +||+|.+.++|.+|| ++...|.+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4678999988742 322 4689999999999999999875 999999999999999 999999999
Q ss_pred EEEEeecCC
Q 011796 74 TVEAKKAVP 82 (477)
Q Consensus 74 ~l~V~~a~~ 82 (477)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999987654
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.5e-07 Score=75.55 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHc-CCccCCeEEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY-----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD-KHMIDGRTVE 76 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~-----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~-~~~i~Gr~l~ 76 (477)
.-.++|.|.|||.++++|.|+-+|+.- |+|++++... .-|+|+|.++++|+++|.+ .|.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 346899999999999999999999872 6888888755 2599999999999999954 9999999999
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCC
Q 011796 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVT 118 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 118 (477)
|....++ ...+|++.+|++.++
T Consensus 78 V~P~~~~--------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR--------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC--------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC--------------------CcceEeeecCCCCCC
Confidence 9886655 456889999988764
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=8.5e-08 Score=90.69 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CcHHHHHHHHhccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEeecCCc
Q 011796 17 TDEERLKEYFSRYGEVVEAVIMRDRA----TGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (477)
Q Consensus 17 ~tee~Lre~F~~~G~V~~v~i~~d~~----tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~~a~~~ 83 (477)
-.+++|++.|++||+|++++|+++.. +++++|++||+|.+.++|++|+ +++..+.||+|.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 56789999999999999999986543 4589999999999999999999 9999999999999987643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=5e-07 Score=75.33 Aligned_cols=74 Identities=8% Similarity=0.184 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcc-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEE
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRY-----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~-----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l 75 (477)
++.++|-|-+||.+++++.|+.|++++ ++|+.|.+..|.. =|+|+|+|..+|-||. +++.+|++|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 458999999999999999999999999 9999999999875 5999999999999987 99999999999
Q ss_pred EEeecCC
Q 011796 76 EAKKAVP 82 (477)
Q Consensus 76 ~V~~a~~ 82 (477)
.|-....
T Consensus 93 r~gTv~e 99 (117)
T 2l9w_A 93 RSGTIND 99 (117)
T ss_dssp EEECHHH
T ss_pred EecCHHH
Confidence 9975543
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.7e-06 Score=69.50 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=64.0
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhc-----CcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQF-----GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~-----G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~ 177 (477)
..++|-|-+||..++++.|+++++++ +.|+.|.+..|.. =|+|+|.++.+|-||.-.++ .+|++|+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46788899999999999999999999 9999999998876 59999999999988887777 899999999
Q ss_pred EEE
Q 011796 178 VKR 180 (477)
Q Consensus 178 V~~ 180 (477)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1e-05 Score=66.79 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=65.8
Q ss_pred cccceeecCCCCCCCHHHHHHHhhh-----cCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQ-----FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~-----~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V 178 (477)
..++|.|.|||..+.+|.|+-+|+. =|+|++|+... .-|+|+|.+.+.|+++|++..|.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999987 26899998864 2699999999999999999899999999999
Q ss_pred EEcCCCCC
Q 011796 179 KRAVPKEF 186 (477)
Q Consensus 179 ~~a~~k~~ 186 (477)
....++..
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88766654
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00064 Score=56.31 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=61.5
Q ss_pred CcEEEEcCCCccC-c----HHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 5 LGKLFIGGISWDT-D----EERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 5 ~~~LfVgnLP~~~-t----ee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
-++|+|.||+.++ + .++|+++|..|.++.....++.-. =..|.|.++++|.+|. +++..+.+++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999999875 2 257789999999999988876532 3689999999999998 9999999999999
Q ss_pred eecCCc
Q 011796 78 KKAVPR 83 (477)
Q Consensus 78 ~~a~~~ 83 (477)
..+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999854
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.0009 Score=55.39 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=62.4
Q ss_pred ccceeecCCCCCC-C----HHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 105 TKKIFVGGLASTV-T----ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 105 ~~~lfV~nLp~~~-t----eedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
.++|+|.||+.++ + .++++++|..|.++.....++.-. -..|.|.++++|.+|..+++ ..++|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998866 2 257789999999988888875422 47999999999999999999 7899999999
Q ss_pred EEcCCCC
Q 011796 179 KRAVPKE 185 (477)
Q Consensus 179 ~~a~~k~ 185 (477)
-++.+-+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998544
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0018 Score=54.95 Aligned_cols=75 Identities=12% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH-HcCCccCC-eEEEEeecC
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDG-RTVEAKKAV 81 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~G-r~l~V~~a~ 81 (477)
+.+-|.|-+.|.+. .+.|.++|++||+|++..... ...+-.|.|.++.+|++|| +|+..|.+ ..|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46789999999985 556778999999999888622 2348999999999999999 88888874 778888765
Q ss_pred Ccch
Q 011796 82 PRDD 85 (477)
Q Consensus 82 ~~~~ 85 (477)
.+..
T Consensus 96 d~~v 99 (119)
T 1wwh_A 96 DKNV 99 (119)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4433
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.12 E-value=0.0013 Score=53.45 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=50.9
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCC--cccEEEEEeCCHHHHHHHH--HcCCcc
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR--ARGFGFVVFADPAVAERVI--MDKHMI 70 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~--srG~aFVeF~~~e~A~kAl--~~~~~i 70 (477)
+||.|+.||+.+||+++.+.+....++.....+.-+.+.+ .-.-|+|.|++.|++.+.. .+++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 6999999999999999999999988877766665443222 2235999999999988887 665554
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.07 E-value=0.00082 Score=54.85 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
..+.|+| .+|+++..+||.++|++||.| .|+.+.|- .|||.|.+++.|..|+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 3456666 999999999999999999854 57777763 6999999999999998
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.05 E-value=0.0008 Score=54.93 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=46.3
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
...+.++| .+|.++...||.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555666 99999999999999999984 456777663 6999999999999999865
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0029 Score=53.69 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=60.1
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccC-CeEEEEEEc
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELN-GKMVEVKRA 181 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~-Gr~l~V~~a 181 (477)
...+-|.|-++|... .+.|.++|++||+|.+...... ..+..|+|+++.+|++||.++...|. +-+|-|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 356678888999874 6778889999999998887322 33999999999999999999888887 477888876
Q ss_pred CC
Q 011796 182 VP 183 (477)
Q Consensus 182 ~~ 183 (477)
..
T Consensus 95 ~d 96 (119)
T 1wwh_A 95 ID 96 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.81 E-value=0.0035 Score=50.81 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=51.4
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHhcC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR--PRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~--~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.+|.|++||+.+||+++.+.+.....+.....+..+.+.+ .-.-|+|.|.+.|++..-.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 4799999999999999999999988777766665543322 23579999999999999988877
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=54.21 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=43.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
+.|+| .+|+++..+||.++|++|| -..|+.+.|- .|||.|.+++.|..|+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 45566 9999999999999999998 4467777763 6999999999999998
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.60 E-value=0.0019 Score=55.63 Aligned_cols=86 Identities=10% Similarity=0.222 Sum_probs=59.5
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeec---------CCCC-----CcccEEEEEeCCHHHHHHHH-H
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD---------RATG-----RARGFGFVVFADPAVAERVI-M 65 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d---------~~tg-----~srG~aFVeF~~~e~A~kAl-~ 65 (477)
|+.....|.|-+.|++.+. .|.++|++||.|.+-.-+.+ +... ....+-.|.|.++.+|++|| .
T Consensus 3 ~~~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 3 LSNGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -----CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred cccCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 4567788999999888655 56778999999877221111 0001 13457899999999999999 9
Q ss_pred cCCccCCeEEEEeecCCcchhh
Q 011796 66 DKHMIDGRTVEAKKAVPRDDQN 87 (477)
Q Consensus 66 ~~~~i~Gr~l~V~~a~~~~~~~ 87 (477)
|...|.+..|=|++..+...++
T Consensus 82 NG~ii~G~mIGV~Py~~~~ve~ 103 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTKDAVER 103 (132)
T ss_dssp TTCEETTEECEEEECCHHHHHH
T ss_pred CCeEeCcEEEEEEECCHHHHHH
Confidence 9999999999998886544333
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0049 Score=50.43 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=45.3
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
.+.++| .+|.++...||.++|+.|| =..|+++.|. .|||.|.+++.|..|+..+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345566 9999999999999999998 4567777664 6999999999999999865
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.62 E-value=0.0029 Score=66.03 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
..|.|+|. .|.++++++|.++|++||+|.++.+-+++. -||.|||.+.+++++++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHH
Confidence 46899997 899999999999999999999998876532 59999999999999887
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.0039 Score=65.05 Aligned_cols=58 Identities=17% Similarity=0.423 Sum_probs=44.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
..+.|+|. +|..+++.+|.++|++||+|.++.+.+++. -||+|||.+++++++++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhcc
Confidence 34689997 799999999999999999999999987643 49999999999999887553
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.59 E-value=0.0076 Score=49.26 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCC--cccEEEEEeCCHHHHHHHH--HcCCc
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR--ARGFGFVVFADPAVAERVI--MDKHM 69 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~--srG~aFVeF~~~e~A~kAl--~~~~~ 69 (477)
.+-+|.|+.||+.+||+++.+.+..+=++.....+.-+.+-+ .-.-|||.|++.|++.... .+.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 356899999999999999988887764543333222222111 1234899999999998887 44443
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.26 E-value=0.015 Score=47.50 Aligned_cols=65 Identities=5% Similarity=0.058 Sum_probs=47.4
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHhcC
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR--PRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~--~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.+-+|.|+.||+.+||+++.+.+...-++.....+..+.+.+ .-.-|+|.|++.|++..-.+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 456899999999999999999888765544333332222211 11358999999999999998877
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.97 E-value=0.038 Score=47.55 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=55.3
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEE-EEEEec--------CCCCC-----cceEEEEEeCCHHHHHHHHHhcCCc
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYD--------HNTQR-----PRGFGFITYDSEEAVDRVLHKTFHE 170 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~-v~i~~d--------~~tg~-----~rG~aFVeF~s~e~a~~Al~~~~~~ 170 (477)
..-|.|-+.|++. ...|-+.|++||.|.+ +.+.++ +...+ ......|+|+++.+|++||.+....
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3457777887654 4567788999999865 322110 00011 2358899999999999999999999
Q ss_pred cCCeEEEEEEcCC
Q 011796 171 LNGKMVEVKRAVP 183 (477)
Q Consensus 171 l~Gr~l~V~~a~~ 183 (477)
|+|..|-|+...+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999987653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.16 E-value=1.3 Score=46.67 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=45.2
Q ss_pred CcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 103 ~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
.....++|. +|..+...+|.++|+.|+. .+|+++.|. .|||.|.+.++|..+++.+.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 345556665 8899999999999999994 456655442 69999999999999998765
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.11 E-value=1.6 Score=45.92 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=42.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 5 ~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
.+.|+|+ +|..+...+|.++|+.|+.| +|+++.+. .|||.|.+++.|..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHH
Confidence 4567776 99999999999999999954 56665542 6999999999999988
No 403
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=64.77 E-value=35 Score=28.03 Aligned_cols=134 Identities=12% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHcCCccCCeEEE
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD----PAVAERVIMDKHMIDGRTVE 76 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~----~e~A~kAl~~~~~i~Gr~l~ 76 (477)
|.....+|.|.++.-.-....|++.+++.-.|..+.+-... .-+.|+|.. .+...+++.+ .|..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~----~G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQD----LGFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHH----HTCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhc----CCCceE
Confidence 45556788999999888888899999887667666653321 246677743 3444455411 011222
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeC-
Q 011796 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD- 155 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~- 155 (477)
+..... ......+|.|.++.-..-...|++.+++.-.|..+.+-... ..+.|+|+
T Consensus 71 ~~~~~~------------------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 126 (149)
T 2ew9_A 71 VMEDYA------------------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDP 126 (149)
T ss_dssp ECSCSC------------------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCT
T ss_pred eecccc------------------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECC
Confidence 110000 00123467888886555567788999888778888775443 26889986
Q ss_pred ---CHHHHHHHHHhcC
Q 011796 156 ---SEEAVDRVLHKTF 168 (477)
Q Consensus 156 ---s~e~a~~Al~~~~ 168 (477)
+.++..++|+...
T Consensus 127 ~~~~~~~i~~~i~~~G 142 (149)
T 2ew9_A 127 EIIGPRDIIKIIEEIG 142 (149)
T ss_dssp TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhCC
Confidence 4577778887765
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.09 E-value=35 Score=27.05 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=53.3
Q ss_pred cccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-C-------ccCCeE
Q 011796 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H-------ELNGKM 175 (477)
Q Consensus 104 ~~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~-------~l~Gr~ 175 (477)
..+.|.|-|+|..+-..++.-.....|----|..+ .|.|.|.|.+.++.+-|++++- + +|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45567889999999998888777777755556655 2359999999999999998753 3 567777
Q ss_pred EEEEEcCC
Q 011796 176 VEVKRAVP 183 (477)
Q Consensus 176 l~V~~a~~ 183 (477)
+.|--..|
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 77654444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.35 E-value=66 Score=25.45 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 3 ~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
+..|-|.|-|||..+-..++.-.....|---.|..+. |-|+|.|.+.++.+.|+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlai 63 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHH
Confidence 3567889999999988888877777777554555543 35999999999988888
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=50.65 E-value=25 Score=31.31 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=38.8
Q ss_pred EEEEcCCCcc---------CcHHHHHHHH--hccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHH
Q 011796 7 KLFIGGISWD---------TDEERLKEYF--SRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~---------~tee~Lre~F--~~~G~V~~v~i~~d~~tg~srG~aFVeF~~-~e~A~kAl 64 (477)
.+.|-|+|.+ ...++|++.| ..|.++. |+.+..+. -.+|++.|+|.. ..--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 4678888872 3457899977 8998876 66656553 478999999965 33455555
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=45.66 E-value=72 Score=25.75 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHh-hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 011796 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (477)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~k 184 (477)
.++..+.-+||..-. +.||.-.++... +.+ ..|-..+.+|.++||+.++..-.=+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cce-------EEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 446677877777665 568887777666 332 78999999999999999883333344444444443
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.55 E-value=51 Score=24.49 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=37.9
Q ss_pred EEEEcCCCcc-CcHHHHHHHHhccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEEe
Q 011796 7 KLFIGGISWD-TDEERLKEYFSRYG-----EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (477)
Q Consensus 7 ~LfVgnLP~~-~tee~Lre~F~~~G-----~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V~ 78 (477)
+|+|.-=-.+ +...+|..++..-+ +|-.|.|..+ |.||+-.... |++++ ++...+.+++|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 5666432222 67778888776543 3555666443 7899886544 44444 77788899999887
Q ss_pred ecC
Q 011796 79 KAV 81 (477)
Q Consensus 79 ~a~ 81 (477)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=40.82 E-value=45 Score=24.00 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=44.0
Q ss_pred ccceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 105 ~~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
..++.|.++.=.--...|++.+++ -.|..+.+-.. .+.+.|+|++.+++.++|+...
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 456888888766677889999998 88888877433 3468899987788888888765
No 410
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=39.41 E-value=47 Score=30.74 Aligned_cols=114 Identities=10% Similarity=0.077 Sum_probs=57.1
Q ss_pred CCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeC---CHHHHHHHH-----HcCCcc---CCeEEEEeecC
Q 011796 13 ISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA---DPAVAERVI-----MDKHMI---DGRTVEAKKAV 81 (477)
Q Consensus 13 LP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~---~~e~A~kAl-----~~~~~i---~Gr~l~V~~a~ 81 (477)
+..++.+.+|+++|+.+.++..+.++.++. -+|--=+.+. +.+++.+++ .++..+ ++..+.|..+.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~---V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPG---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC------CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 445566677888888877777777777653 2444445553 466666554 444332 57778887664
Q ss_pred CcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhc
Q 011796 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (477)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~ 129 (477)
....+...............+..+..+.+.+....--...|+.++..-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 86 AAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred HhhhcCCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 322211100000000111122345556666666665666777777664
No 411
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=36.14 E-value=1.1e+02 Score=21.23 Aligned_cols=50 Identities=6% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC
Q 011796 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD 56 (477)
Q Consensus 1 me~d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~ 56 (477)
|+....+|.|.++........|++.+.+.-.|..+.+-... ..+.|+|..
T Consensus 1 m~~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 50 (75)
T 1yjr_A 1 MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDP 50 (75)
T ss_dssp CCCCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECT
T ss_pred CCceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECC
Confidence 67777889999999888888999999988778877774432 357788854
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.81 E-value=54 Score=29.19 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred ceeecCCCCC---------CCHHHHHHHh--hhcCcEEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 011796 107 KIFVGGLAST---------VTESDFKKYF--DQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165 (477)
Q Consensus 107 ~lfV~nLp~~---------~teedL~~~F--~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s-~e~a~~Al~ 165 (477)
.+.|-|+|.. ....+|++.| ..|.+++ |+.+.++. -.+|+|+|+|.. -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 4556676652 3347899977 8998865 55555543 468999999974 444444443
No 413
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=31.45 E-value=1.2e+02 Score=21.46 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeC----CHHHHHHHHHhcCC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD----SEEAVDRVLHKTFH 169 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~----s~e~a~~Al~~~~~ 169 (477)
.++.|.++.-.--...|++.+++.-.|..+.+-.... -+.|+|+ +.+++.++|+....
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN------RADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT------EEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC------EEEEEECCCCCCHHHHHHHHHHCCC
Confidence 3577777765555678999999888888888765432 6889985 56788888887653
No 414
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=30.17 E-value=89 Score=28.46 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=24.0
Q ss_pred cceEEEEEeCCHHHHHHHHHhcCCccCCe
Q 011796 146 PRGFGFITYDSEEAVDRVLHKTFHELNGK 174 (477)
Q Consensus 146 ~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr 174 (477)
.|||.|||=+++.++++||+.+.+.+..+
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~~ 176 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYISQ 176 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcCC
Confidence 58999999999999999998887644333
No 415
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.78 E-value=1e+02 Score=24.06 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=38.2
Q ss_pred eecCCCCCCCHHHHHHHhhh-cC-cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 011796 109 FVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (477)
Q Consensus 109 fV~nLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~ 167 (477)
++-.++...+..+|++.+++ |+ .|..|..+.-+.. .--|+|++...++|.....++
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~---~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG---EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS---CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC---ceEEEEEcCCCCcHHHHHHhh
Confidence 44456678999999999987 55 5677776654432 225999998776666655443
No 416
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=35.93 E-value=11 Score=30.87 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEE--EEEeCCHHHHHHHHHhcCCccC
Q 011796 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG--FITYDSEEAVDRVLHKTFHELN 172 (477)
Q Consensus 117 ~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~a--FVeF~s~e~a~~Al~~~~~~l~ 172 (477)
.++++|+++.++.. +..+.|.+....+++. |. +=.|.+.++|++|++.+...|.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 45677788777775 4556665433223321 22 2257899999999988875543
No 417
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.36 E-value=1e+02 Score=25.64 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=44.9
Q ss_pred ceeecCCCCCCCHHH---HHHHhhhcCcEEEEEEEecCCCCCcceEEEEEe--CCHHHHHHHHHhcC-----------Cc
Q 011796 107 KIFVGGLASTVTESD---FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVDRVLHKTF-----------HE 170 (477)
Q Consensus 107 ~lfV~nLp~~~teed---L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF--~s~e~a~~Al~~~~-----------~~ 170 (477)
.|.|..+|+.+..+- .+.+-..|-.-+...|+ +...|.--|.| ++.|+.++||+++- ..
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 467778887776542 22333455555556666 33456777888 58999999998763 14
Q ss_pred cCCeEEEEEEc
Q 011796 171 LNGKMVEVKRA 181 (477)
Q Consensus 171 l~Gr~l~V~~a 181 (477)
|+|..|+|...
T Consensus 119 l~gn~l~i~it 129 (170)
T 4hhu_A 119 LSGNRLVIVIT 129 (170)
T ss_dssp ECSSEEEEEEE
T ss_pred EeCCEEEEEEe
Confidence 67777776654
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.98 E-value=96 Score=24.26 Aligned_cols=32 Identities=6% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 132 V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
|.+|.++. ...||.||+++..++...++..+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55666553 378999999999999888886665
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.52 E-value=89 Score=22.32 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 011796 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (477)
Q Consensus 4 d~~~LfVgnLP~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (477)
...+|.|.++.-......|++.+++ -.|..+.+-.. ..-+.|+|.++++..+++
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i 58 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAV 58 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHH
Confidence 3467899999999889999999998 77887777432 235778887666666666
No 420
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=28.29 E-value=81 Score=25.20 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHh-hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 011796 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (477)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~ 168 (477)
-++..+.-+||++.. ..||.-.++..+.+ .-.|-..+.++.++|++.++
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhc
Confidence 456678888887766 46888888877733 26788899999999999977
No 421
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=27.45 E-value=2.4e+02 Score=22.98 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=36.0
Q ss_pred EEEcCCCccCcHHHHHHHHhc-------cCCeeEEEEeecCCC-CCcccE---EEEEeCCHHHHHHHH
Q 011796 8 LFIGGISWDTDEERLKEYFSR-------YGEVVEAVIMRDRAT-GRARGF---GFVVFADPAVAERVI 64 (477)
Q Consensus 8 LfVgnLP~~~tee~Lre~F~~-------~G~V~~v~i~~d~~t-g~srG~---aFVeF~~~e~A~kAl 64 (477)
|.+=.|..+++++++.++.+. +-.|.++.+-++... .+.++| .+++|.+.++.+.-+
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 24 LVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 344457888887766555433 556788877665432 445555 456788888776554
No 422
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=27.38 E-value=51 Score=25.44 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=30.4
Q ss_pred CcHHHHHHHHhccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH--HcCCccCCeEEEE
Q 011796 17 TDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (477)
Q Consensus 17 ~tee~Lre~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~l~V 77 (477)
.||++|++++++|-. ..+|++ .|...+.++..+|. ..+.+|+-|.-+|
T Consensus 33 ktedelkkyleefrkesqnikv-------------lilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIKV-------------LILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEEE-------------EEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeEE-------------EEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 589999999888732 222222 33445677777777 5567777665544
No 423
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=26.07 E-value=69 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred cEEEEEeCCHHHHHHHHHcCCccCCeEEEEeec
Q 011796 48 GFGFVVFADPAVAERVIMDKHMIDGRTVEAKKA 80 (477)
Q Consensus 48 G~aFVeF~~~e~A~kAl~~~~~i~Gr~l~V~~a 80 (477)
--.||.|+++++|.+++.....| +.|.|---
T Consensus 98 ~~v~il~k~p~d~~~lve~Gv~i--~~vNvG~m 128 (187)
T 3lfj_A 98 EKVFLLFKNIDTCKRVMDGGLPI--TTLNIGGV 128 (187)
T ss_dssp EEEEEEESSHHHHHHHHHTTCCC--SEEEEEEB
T ss_pred ceEEEEECCHHHHHHHHHcCCCC--CEEEECCC
Confidence 45899999999999998766655 36666543
No 424
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=23.96 E-value=2.3e+02 Score=22.29 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=35.6
Q ss_pred EEEEcCCCccCcHHHHHHHHhc-------cCCeeEEEEeecCCC---CCcccE---EEEEeCCHHHHHHHH
Q 011796 7 KLFIGGISWDTDEERLKEYFSR-------YGEVVEAVIMRDRAT---GRARGF---GFVVFADPAVAERVI 64 (477)
Q Consensus 7 ~LfVgnLP~~~tee~Lre~F~~-------~G~V~~v~i~~d~~t---g~srG~---aFVeF~~~e~A~kAl 64 (477)
.|.+=.|..+++++++.++.+. +-.|.++.+-++... .+.++| -+++|.+.++.+.-+
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYL 81 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHHh
Confidence 3334457778877776554433 456778877665432 445555 456788888876544
No 425
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=23.48 E-value=1.7e+02 Score=26.04 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=64.7
Q ss_pred cEEEEcCC----CccCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeC-CHHHHHHHH----HcCCccCCeEEE
Q 011796 6 GKLFIGGI----SWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-DPAVAERVI----MDKHMIDGRTVE 76 (477)
Q Consensus 6 ~~LfVgnL----P~~~tee~Lre~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~-~~e~A~kAl----~~~~~i~Gr~l~ 76 (477)
..+++++| ...+.-.||+++|++.| ..+|+-... + |-.+.+-. ++++.++.| .+..-++- .|.
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v-~v~ 78 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----GNIFFTSIDSKAQLVEKLETFFAVHYPFIQ-SFS 78 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----TEEEEEECSCHHHHHHHHHHHHHHHCTTCC-CCE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----CCEEEecCCCHHHHHHHHHHHHHHhcCCCC-CEE
Confidence 35677777 34588999999999986 445544332 2 23333322 333333333 22222222 233
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCcccceeecCCCCCCCHHHHHHHhhhcC-cEEEEEEEecCCCCCcceEEEE-Ee
Q 011796 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFI-TY 154 (477)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV-eF 154 (477)
|.... +-+.....++.... .+..+++|--|+..++.++|.+.+.... ..+.+.+... ..|+ .|
T Consensus 79 vrs~~--el~~i~~~~Pf~~~-----~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~~--------~iy~~~~ 143 (183)
T 2hiy_A 79 LLSLE--DFEAELENLPAWWS-----RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGKL--------GIFWGKF 143 (183)
T ss_dssp EEEHH--HHHHHHTTCCGGGG-----SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECSS--------EEEEEEC
T ss_pred EecHH--HHHHHHHhCCCCcc-----CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEECC--------EEEEEEe
Confidence 33221 22222222221110 1345778888888889998777665432 3356665422 5677 77
Q ss_pred C
Q 011796 155 D 155 (477)
Q Consensus 155 ~ 155 (477)
.
T Consensus 144 ~ 144 (183)
T 2hiy_A 144 S 144 (183)
T ss_dssp C
T ss_pred C
Confidence 4
No 426
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.22 E-value=1e+02 Score=24.30 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHh-hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 011796 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (477)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~~a~~ 183 (477)
-++..+.-+||++-. ..||.-.++..+.+ --.|-..+.++.++|++.++....=+.|+|-...+
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEEcC
Confidence 446667777777666 45887777777633 25788899999999999987433444455544443
No 427
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=22.60 E-value=1.2e+02 Score=23.31 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 011796 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (477)
Q Consensus 117 ~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V 178 (477)
-||++|+.+++.|-. +++.- -.+|...+.++.++|.+... .+|+=|.-+|
T Consensus 33 ktedelkkyleefrk----------esqni--kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRK----------ESQNI--KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTS----------STTSE--EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHh----------hccCe--EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 589999999998842 11111 23455567888888887666 5666554444
No 428
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.94 E-value=2e+02 Score=19.73 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=41.3
Q ss_pred cceeecCCCCCCCHHHHHHHhhhcCcEEEEEEEecCCCCCcceEEEEEeC---CHHHHHHHHHhcC
Q 011796 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD---SEEAVDRVLHKTF 168 (477)
Q Consensus 106 ~~lfV~nLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~~rG~aFVeF~---s~e~a~~Al~~~~ 168 (477)
.++.|.++.-.--...|++.+++...|..+.+-.... -+.|+|+ +.+++.++|++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~i~~~i~~~G 63 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE------QAVVSYHGETTPQILTDAVERAG 63 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEECTTCCHHHHHHHHHHTT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC------EEEEEECCCCCHHHHHHHHHHcC
Confidence 4577777766556678999999988888888764432 5788884 4667778887655
No 429
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=21.25 E-value=2.7e+02 Score=21.64 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCccCcHHHHHHHHhc-------cCCeeEEEEeecCCCCCcccE---EEEEeCCHHHHHHHH
Q 011796 12 GISWDTDEERLKEYFSR-------YGEVVEAVIMRDRATGRARGF---GFVVFADPAVAERVI 64 (477)
Q Consensus 12 nLP~~~tee~Lre~F~~-------~G~V~~v~i~~d~~tg~srG~---aFVeF~~~e~A~kAl 64 (477)
.|..+++++++.++.+. +-.|.++.+-++.. .+.++| -.++|.+.|+.+.-+
T Consensus 12 k~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~ 73 (103)
T 2qyc_A 12 EFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQ 73 (103)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHT
T ss_pred EECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHh
Confidence 46677776665544432 56688888777654 455555 456788888776543
No 430
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.10 E-value=85 Score=25.41 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHh-hhcCcEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 011796 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (477)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~~~l~Gr~l~V~ 179 (477)
.++..+.-+||++-. ..||.-.++..+.+ --.|-..+.++.++|++.++....=+.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 456677778877766 45888777777733 2578889999999999998733333333433
No 431
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.96 E-value=70 Score=23.68 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCCHHHHHHHhhhcC-----cEEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 011796 116 TVTESDFKKYFDQFG-----TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (477)
Q Consensus 116 ~~teedL~~~F~~~G-----~V~~v~i~~d~~tg~~rG~aFVeF~s~e~a~~Al~~~~-~~l~Gr~l~V~~a~ 182 (477)
.+...+|..++..-+ .|-.|.|..+ |.||+-... .++++++.+. ..+.++++.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 345556666665433 4556666533 788887653 4556666666 68899999988764
No 432
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.46 E-value=1.3e+02 Score=26.28 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCHHHHHHHhhhcCcEE---EEEEEecCCCCCcceEEEEE
Q 011796 117 VTESDFKKYFDQFGTIT---DVVVMYDHNTQRPRGFGFIT 153 (477)
Q Consensus 117 ~teedL~~~F~~~G~V~---~v~i~~d~~tg~~rG~aFVe 153 (477)
.|+++|+++-++.|++. ++.+..|..+++.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999999999883 55666665478888777764
No 433
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=20.02 E-value=2.5e+02 Score=22.32 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcc-------CCeeEEEEeecCCC-CCcccE---EEEEeCCHHHHHHHH
Q 011796 6 GKLFIGGISWDTDEERLKEYFSRY-------GEVVEAVIMRDRAT-GRARGF---GFVVFADPAVAERVI 64 (477)
Q Consensus 6 ~~LfVgnLP~~~tee~Lre~F~~~-------G~V~~v~i~~d~~t-g~srG~---aFVeF~~~e~A~kAl 64 (477)
+.|.+=.|..+++++++.++.+.+ -.|.++.+-++... .+.++| -+++|.+.|+.+.-+
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Done!