Query 011797
Match_columns 477
No_of_seqs 307 out of 2195
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 3.8E-28 8.1E-33 241.1 28.6 238 82-443 10-248 (266)
2 COG0730 Predicted permeases [G 100.0 4.3E-27 9.4E-32 232.2 29.6 242 82-443 5-248 (258)
3 PF01925 TauE: Sulfite exporte 99.9 2.4E-26 5.3E-31 223.6 23.2 232 88-443 2-238 (240)
4 PRK10621 hypothetical protein; 99.3 6.5E-11 1.4E-15 117.7 16.0 106 336-442 13-118 (266)
5 COG0730 Predicted permeases [G 99.2 2.7E-10 6E-15 112.5 15.9 108 336-443 8-115 (258)
6 PF01925 TauE: Sulfite exporte 98.9 9.5E-09 2.1E-13 99.9 13.3 104 340-444 3-106 (240)
7 PF02673 BacA: Bacitracin resi 95.4 3.2 6.9E-05 41.3 21.1 88 116-203 29-126 (259)
8 PRK00281 undecaprenyl pyrophos 91.6 16 0.00035 36.6 22.3 86 117-202 36-129 (268)
9 PF04018 DUF368: Domain of unk 86.6 36 0.00079 33.9 22.3 79 337-435 144-222 (257)
10 COG2119 Predicted membrane pro 81.0 51 0.0011 31.2 15.6 49 156-204 36-84 (190)
11 COG1968 BacA Undecaprenyl pyro 76.2 90 0.0019 31.3 21.4 65 124-188 43-114 (270)
12 COG3619 Predicted membrane pro 69.7 72 0.0016 31.2 11.6 65 118-188 137-201 (226)
13 PRK12554 undecaprenyl pyrophos 64.9 1.6E+02 0.0035 29.6 19.8 47 157-203 84-131 (276)
14 KOG2881 Predicted membrane pro 53.8 1.4E+02 0.0031 29.8 10.4 55 156-210 101-155 (294)
15 COG2119 Predicted membrane pro 52.1 52 0.0011 31.1 6.8 50 156-205 135-184 (190)
16 TIGR02840 spore_YtaF putative 52.0 2.2E+02 0.0048 27.2 18.0 46 162-207 38-83 (206)
17 PF01169 UPF0016: Uncharacteri 50.4 51 0.0011 26.5 5.8 42 156-197 35-76 (78)
18 PF02990 EMP70: Endomembrane p 49.1 4E+02 0.0086 29.3 14.4 24 156-179 327-350 (521)
19 PF04066 MrpF_PhaF: Multiple r 48.2 1E+02 0.0022 22.9 6.7 54 371-424 2-55 (55)
20 PRK11588 hypothetical protein; 46.9 4E+02 0.0086 29.3 13.5 28 415-442 463-491 (506)
21 PF07172 GRP: Glycine rich pro 46.3 37 0.00081 28.5 4.5 18 19-36 11-28 (95)
22 PRK10263 DNA translocase FtsK; 44.1 3.5E+02 0.0076 33.2 13.4 16 340-355 67-82 (1355)
23 PF11368 DUF3169: Protein of u 43.2 3.3E+02 0.0071 26.6 15.1 26 157-182 8-33 (248)
24 TIGR00753 undec_PP_bacA undeca 41.0 3.8E+02 0.0081 26.7 21.4 47 157-203 77-125 (255)
25 PF11833 DUF3353: Protein of u 40.5 1.8E+02 0.0038 27.8 8.6 29 156-184 138-166 (194)
26 PRK09412 anaerobic C4-dicarbox 40.5 4.6E+02 0.01 28.0 12.9 25 444-468 387-411 (433)
27 PF02652 Lactate_perm: L-lacta 38.7 5.7E+02 0.012 28.2 16.4 44 87-131 104-148 (522)
28 COG1288 Predicted membrane pro 37.5 4.7E+02 0.01 28.3 11.9 34 98-132 149-187 (481)
29 PF01169 UPF0016: Uncharacteri 37.4 1.1E+02 0.0023 24.7 5.7 36 404-439 40-75 (78)
30 PTZ00370 STEVOR; Provisional 35.7 2.6E+02 0.0057 28.3 9.2 44 169-212 242-288 (296)
31 PF03596 Cad: Cadmium resistan 35.5 4E+02 0.0086 25.3 10.5 35 170-204 41-75 (191)
32 PF09835 DUF2062: Uncharacteri 34.8 3.3E+02 0.0073 24.3 14.1 48 82-132 20-67 (154)
33 PF05232 BTP: Bacterial Transm 33.1 97 0.0021 24.2 4.7 38 107-144 19-56 (67)
34 TIGR00770 Dcu anaerobic c4-dic 32.8 6.4E+02 0.014 27.0 14.7 21 109-129 108-131 (430)
35 TIGR03434 ADOP Acidobacterial 32.2 8.1E+02 0.017 27.9 14.9 28 338-365 321-348 (803)
36 KOG1278 Endosomal membrane pro 31.3 7.8E+02 0.017 27.5 13.8 24 156-179 393-416 (628)
37 TIGR00801 ncs2 uracil-xanthine 30.7 6.7E+02 0.014 26.5 12.3 40 357-397 21-62 (415)
38 COG4129 Predicted membrane pro 30.0 5.9E+02 0.013 26.4 11.1 19 165-183 130-148 (332)
39 PF11169 DUF2956: Protein of u 29.5 1.6E+02 0.0035 25.1 5.6 13 265-277 88-100 (103)
40 COG4280 Predicted membrane pro 29.3 4.7E+02 0.01 25.2 9.3 34 180-213 59-92 (236)
41 COG3180 AbrB Putative ammonia 28.6 7E+02 0.015 26.1 11.4 107 325-453 1-107 (352)
42 PF07760 DUF1616: Protein of u 26.5 1.2E+02 0.0026 30.5 5.4 45 144-198 107-151 (287)
43 PRK12600 putative monovalent c 26.5 3.8E+02 0.0082 22.4 7.4 55 370-424 30-84 (94)
44 TIGR00795 lctP L-lactate trans 26.4 7.7E+02 0.017 27.2 11.9 48 85-133 108-156 (530)
45 COG2851 CitM H+/citrate sympor 24.7 8.7E+02 0.019 25.9 15.7 40 414-453 390-430 (433)
46 PRK09695 glycolate transporter 24.6 1.3E+02 0.0029 33.4 5.6 48 85-133 117-165 (560)
47 PRK06161 putative monovalent c 24.6 4E+02 0.0087 22.0 7.2 59 366-424 25-84 (89)
48 PLN00151 potassium transporter 24.4 6.7E+02 0.014 29.4 11.1 99 105-218 466-580 (852)
49 PF13515 FUSC_2: Fusaric acid 24.3 4.3E+02 0.0093 22.2 9.0 22 165-186 40-61 (128)
50 PF02652 Lactate_perm: L-lacta 24.1 9.9E+02 0.022 26.3 14.5 40 344-383 110-150 (522)
51 COG4060 MtrD Tetrahydromethano 23.7 1.7E+02 0.0038 27.4 5.3 41 339-379 134-174 (230)
52 PRK01844 hypothetical protein; 23.7 1.9E+02 0.0042 23.0 4.8 27 406-432 9-35 (72)
53 PLN00148 potassium transporter 23.3 7.3E+02 0.016 28.8 11.2 100 106-219 390-504 (785)
54 TIGR00893 2A0114 d-galactonate 22.9 7.2E+02 0.016 24.3 14.9 17 166-182 129-145 (399)
55 PF02705 K_trans: K+ potassium 22.6 6.7E+02 0.015 27.8 10.4 46 165-218 392-437 (534)
56 TIGR02230 ATPase_gene1 F0F1-AT 22.5 2.6E+02 0.0057 23.8 5.8 26 160-185 48-73 (100)
57 PF09527 ATPase_gene1: Putativ 22.3 3.2E+02 0.0069 20.0 6.7 26 159-184 5-30 (55)
58 COG4300 CadD Predicted permeas 21.8 2.5E+02 0.0054 26.7 5.9 37 169-205 51-87 (205)
59 PF09605 Trep_Strep: Hypotheti 21.7 6.6E+02 0.014 23.4 10.8 33 400-432 154-186 (186)
60 COG3416 Uncharacterized protei 21.5 69 0.0015 30.8 2.3 25 91-115 137-161 (233)
61 PRK10420 L-lactate permease; P 21.5 1.6E+02 0.0035 32.6 5.5 44 89-133 121-165 (551)
62 PRK00523 hypothetical protein; 21.4 2.3E+02 0.0049 22.7 4.8 26 406-431 10-35 (72)
63 PRK11469 hypothetical protein; 21.3 6.9E+02 0.015 23.5 21.3 43 163-206 46-88 (188)
64 PF10399 UCR_Fe-S_N: Ubiquitin 20.9 45 0.00098 23.6 0.7 17 99-115 21-37 (41)
65 TIGR00794 kup potassium uptake 20.9 9.7E+02 0.021 27.5 11.4 45 166-218 430-474 (688)
66 TIGR02865 spore_II_E stage II 20.8 1.1E+03 0.024 27.3 12.3 30 19-48 121-150 (764)
67 TIGR01112 mtrD N5-methyltetrah 20.8 3E+02 0.0065 26.3 6.3 42 68-122 126-167 (223)
68 PF04279 IspA: Intracellular s 20.6 6.9E+02 0.015 23.2 15.8 53 260-315 115-171 (176)
69 PRK12612 putative monovalent c 20.2 4.9E+02 0.011 21.3 7.3 56 369-424 29-84 (87)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.97 E-value=3.8e-28 Score=241.08 Aligned_cols=238 Identities=20% Similarity=0.222 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhchHHHHHHHhCCChhhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHH
Q 011797 82 WKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLA 161 (477)
Q Consensus 82 ~~~vv~~~ig~lag~i~~~~GvGGG~i~vPiL~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~ 161 (477)
+..++.+++|+++|+++++.| |||.+.+|+|.. +|+||++|+++|.+.++.+++++.+.|+|++| +||+.+
T Consensus 10 ~~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~ 80 (266)
T PRK10621 10 LLLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQ 80 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHH
Confidence 345667778999999999999 999999999975 79999999999999999999999999888888 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHHHHHHHhhhhcccccccCcCCCCC
Q 011797 162 LLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQL 241 (477)
Q Consensus 162 ~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~e~~~~l~~~~~~~~~~~~~~~~l 241 (477)
.++.+++++|+.+|+++..++|++.++.+++++++..+.+++.+ +++ +++ +.+.+
T Consensus 81 ~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~------~~~-~~~----------------~~~~~-- 135 (266)
T PRK10621 81 KLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM------PKL-GEE----------------DRQRR-- 135 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC------Ccc-ccc----------------ccccc--
Confidence 99999999999999999999999999999999888877666532 100 000 00000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHhHhHHHHHHHHHHHHHHHhhcccccc
Q 011797 242 PSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIA 321 (477)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 321 (477)
++
T Consensus 136 -------------------~~----------------------------------------------------------- 137 (266)
T PRK10621 136 -------------------LY----------------------------------------------------------- 137 (266)
T ss_pred -------------------cc-----------------------------------------------------------
Confidence 00
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 011797 322 SKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFP 400 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~ 400 (477)
. .......|+.+|+++|++|+|+|.+.+|.++ .+++|++++++|+.+..+.+++.+...|...|.+|
T Consensus 138 -----~-------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~ 205 (266)
T PRK10621 138 -----G-------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVI 205 (266)
T ss_pred -----c-------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeh
Confidence 0 0012347889999999999999999988774 67999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHH
Q 011797 401 VPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTI 443 (477)
Q Consensus 401 ~~~~l~l~~g~iiGa~iGa~l~~kl~~~~~r~~lii~il~~~i 443 (477)
|..++.+.+++++|+++|+++.+|++++.+|+.+..+++...+
T Consensus 206 ~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i 248 (266)
T PRK10621 206 WATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSA 248 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877655443
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.96 E-value=4.3e-27 Score=232.23 Aligned_cols=242 Identities=24% Similarity=0.379 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhchHHHHHHHhCCChhhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHH
Q 011797 82 WKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLA 161 (477)
Q Consensus 82 ~~~vv~~~ig~lag~i~~~~GvGGG~i~vPiL~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~ 161 (477)
...++.+++|+++|+++++.|+|||.+.+|.|.. +++||++|.+++++....+++.+.+.|+|++| +||+.+
T Consensus 5 ~~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~ 76 (258)
T COG0730 5 MTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLA 76 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHH
Confidence 3467778899999999999999999999999998 56999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHHHHHHHhhhhcccccccCcCCCCC
Q 011797 162 LLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQL 241 (477)
Q Consensus 162 ~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~e~~~~l~~~~~~~~~~~~~~~~l 241 (477)
.++.+++++|+.+|+++..++|++.++..++.++++.+.+++.+... + ++| +.+.+
T Consensus 77 ~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~---~~~---------------~~~~~-- 132 (258)
T COG0730 77 LILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----A---KAE---------------DRAAR-- 132 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----c---ccc---------------ccccc--
Confidence 99999999999999999999999999999999999998888754210 0 000 00000
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHhHhHHHHHHHHHHHHHHHhhcccccc
Q 011797 242 PSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIA 321 (477)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 321 (477)
. .+|.
T Consensus 133 ----------~------~~~~----------------------------------------------------------- 137 (258)
T COG0730 133 ----------L------RPLL----------------------------------------------------------- 137 (258)
T ss_pred ----------c------Ccch-----------------------------------------------------------
Confidence 0 0000
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHH-hCCc
Q 011797 322 SKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYL-LDRF 399 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~-~G~i 399 (477)
......+|+.+|+++|++|+|||+..+|.+. ..+.|.+.+++|+.+..++++..+...|.. .|.+
T Consensus 138 -------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~ 204 (258)
T COG0730 138 -------------FALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAV 204 (258)
T ss_pred -------------hHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 0123467899999999999999999999986 668999999999999999999999999998 7999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHH
Q 011797 400 PVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTI 443 (477)
Q Consensus 400 ~~~~~l~l~~g~iiGa~iGa~l~~kl~~~~~r~~lii~il~~~i 443 (477)
||..+..+.+++++|+++|+++.+|++++.+|+.+.++++...+
T Consensus 205 ~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~ 248 (258)
T COG0730 205 DWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAI 248 (258)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99988899999999999999999999999999988766655544
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.95 E-value=2.4e-26 Score=223.58 Aligned_cols=232 Identities=26% Similarity=0.459 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhhcccccchhchHHHHHHHhCCChhhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 011797 88 SIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPM 167 (477)
Q Consensus 88 ~~ig~lag~i~~~~GvGGG~i~vPiL~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~~~l~~~ 167 (477)
+++++++|++.+..|+|+|.+.+|+|.. + +||++|++++......++..+++.|+|+++ +||+...++.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 4577888888888899999999999998 4 899999999999999999999999888877 999999999999
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHHHHHHHhhhhcccccccCcCCCCCCCCCCC
Q 011797 168 LMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSGPST 247 (477)
Q Consensus 168 ~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 247 (477)
+++|+.+|+++..++|++.++.+++++++..+.+++.+ ++. ++ . ++.+.++
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~------~~~---~~-----------~--~~~~~~~------- 123 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK------KRR---KT-----------P--KSRSSPP------- 123 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc------ccc---cc-----------c--ccccccc-------
Confidence 99999999999999999999999999999888777643 110 00 0 0000000
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHhHhHHHHHHHHHHHHHHHhhcccccccccccc
Q 011797 248 VHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEI 327 (477)
Q Consensus 248 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (477)
+ +|
T Consensus 124 ---~--------~~------------------------------------------------------------------ 126 (240)
T PF01925_consen 124 ---K--------RW------------------------------------------------------------------ 126 (240)
T ss_pred ---c--------hh------------------------------------------------------------------
Confidence 0 00
Q ss_pred chhhhHHHHHHHHHHHH-HHHHHhhhhcchhhhHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH
Q 011797 328 TNWKIHQIVFYCFCGIV-AGMVGGLLGLGGGFILGPLFLE-LGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAA 405 (477)
Q Consensus 328 ~~~~~~~~~~~~~~G~~-aG~isGllGiGGG~i~~PlLl~-~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l 405 (477)
....+|.+ +|+++|++|+|+|++.+|++.+ .+.|++++++|+.+..++++..+...|...|.+||+...
T Consensus 127 ---------~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (240)
T PF01925_consen 127 ---------LLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLL 197 (240)
T ss_pred ---------hhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 12234445 9999999999999999999974 699999999999999999999999999999999998766
Q ss_pred H---HHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHH
Q 011797 406 F---FTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTI 443 (477)
Q Consensus 406 ~---l~~g~iiGa~iGa~l~~kl~~~~~r~~lii~il~~~i 443 (477)
. +.+++++|+++|+++.+|++++.+|+.+.++++...+
T Consensus 198 ~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~ 238 (240)
T PF01925_consen 198 LSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGL 238 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6 9999999999999999999999999988877665543
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.29 E-value=6.5e-11 Score=117.69 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 011797 336 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 415 (477)
Q Consensus 336 ~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa 415 (477)
......|+++|+++|+.| |||.+.+|++..+|+||++|++|+.+..+.+++.+...|...+++||+....+.+++++|+
T Consensus 13 ~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~Ga 91 (266)
T PRK10621 13 GVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVGS 91 (266)
T ss_pred HHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456678999999999999 9999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHH
Q 011797 416 FAGQHVVRKIIAVLGRASIIVFILALT 442 (477)
Q Consensus 416 ~iGa~l~~kl~~~~~r~~lii~il~~~ 442 (477)
.+|+.+..+++++.+|..+.++++...
T Consensus 92 ~~G~~l~~~l~~~~l~~~~~~~ll~~~ 118 (266)
T PRK10621 92 MSGALLVQYVQADILRQILPILVIGIG 118 (266)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988776655443
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.22 E-value=2.7e-10 Score=112.52 Aligned_cols=108 Identities=31% Similarity=0.463 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 011797 336 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 415 (477)
Q Consensus 336 ~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa 415 (477)
......|+++|+++|++|+|||.+.+|.++.+++||+.|.+|+.....+++..+...|+..|++||+.+..+.+++++|+
T Consensus 8 ~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G~ 87 (258)
T COG0730 8 LLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIGA 87 (258)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHH
Q 011797 416 FAGQHVVRKIIAVLGRASIIVFILALTI 443 (477)
Q Consensus 416 ~iGa~l~~kl~~~~~r~~lii~il~~~i 443 (477)
.+|+.+..+++++.++..+.++++....
T Consensus 88 ~lG~~l~~~~~~~~l~~~~~~~ll~~~~ 115 (258)
T COG0730 88 FLGALLALLLPAELLKLLFGLLLLLLAL 115 (258)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876665554443
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.95 E-value=9.5e-09 Score=99.93 Aligned_cols=104 Identities=25% Similarity=0.431 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 011797 340 FCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQ 419 (477)
Q Consensus 340 ~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~iGa 419 (477)
++++++|+++|..|.|+|.+.+|.+..+ +||+++++|+.+...+++..++..|...|++||+....+.+++++|+.+|.
T Consensus 3 ~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG~ 81 (240)
T PF01925_consen 3 LIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIGA 81 (240)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHHH
Confidence 5788999999999999999999999765 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHH
Q 011797 420 HVVRKIIAVLGRASIIVFILALTIF 444 (477)
Q Consensus 420 ~l~~kl~~~~~r~~lii~il~~~i~ 444 (477)
.+...++++.++..+.++++...+.
T Consensus 82 ~l~~~l~~~~l~~~~~~~ll~~~~~ 106 (240)
T PF01925_consen 82 WLLSLLPDDILKLIFGLFLLLLAIY 106 (240)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777666544443
No 7
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=95.41 E-value=3.2 Score=41.32 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=57.6
Q ss_pred HhCCChhhHhHHHHHHHHHHHHHHHHHHHHhcCC-----CC---CCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 011797 116 IIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHP-----TL---DMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMV 187 (477)
Q Consensus 116 ~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p-----~~---~~plId~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l 187 (477)
++|.++...........+++.++-.++++++-.. .. ++.--|++....+.+++++-+++|..+-..+.+...
T Consensus 29 llg~~~~~~~~f~v~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~ 108 (259)
T PF02673_consen 29 LLGWDPEPGLAFDVFLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALFF 108 (259)
T ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678877777777788888888777776543110 00 112246888899999999999999888777766552
Q ss_pred --HHHHHHHHHHHHHHHH
Q 011797 188 --TVLLIILFIGTSTKAL 203 (477)
Q Consensus 188 --~~l~~i~ll~~~~~~~ 203 (477)
....++.+++.+..+.
T Consensus 109 ~~~~~v~~~Li~~g~lL~ 126 (259)
T PF02673_consen 109 SSPLVVAIALIITGLLLW 126 (259)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 2345555555554443
No 8
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=91.58 E-value=16 Score=36.56 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=49.6
Q ss_pred hCCChhhHhHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-
Q 011797 117 IGFDPKSATAISKCMIMGAAGSTVYYNLRLRH-------PTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVT- 188 (477)
Q Consensus 117 ~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~-------p~~~~plId~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~- 188 (477)
+|++............+++.++-.++++++-. .+....--++++...+..+++|-.++|..+...+++..-+
T Consensus 36 lg~~~~~~~~f~v~lhlGtllAvl~~fr~di~~~~~~~~~~~~~~~~~~~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~ 115 (268)
T PRK00281 36 LGFEDDFGKTFDVVIQLGAILAVVVYFRRRLWRLLGGSGKGGRGDREDRRLLLLVIVATIPAGVLGLLFKDFIKEHLFSP 115 (268)
T ss_pred hCCCccccceehhHHHHhhHHHHHHHHHHHHHHHHHhhccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 46643322335666677777776666654310 0010111367888888999999999998887766543211
Q ss_pred HHHHHHHHHHHHHH
Q 011797 189 VLLIILFIGTSTKA 202 (477)
Q Consensus 189 ~l~~i~ll~~~~~~ 202 (477)
...+..+++.+..+
T Consensus 116 ~~v~~~Lii~gilL 129 (268)
T PRK00281 116 IVVAIALIVGGILL 129 (268)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 9
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=86.55 E-value=36 Score=33.85 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 011797 337 FYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAF 416 (477)
Q Consensus 337 ~~~~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~ 416 (477)
...++|++++.--=+=|+.|..++. .+|.=.....+-+.+.. -|+....++..|+++|-.
T Consensus 144 ~lf~~G~ia~~AMIlPGiSGS~iLl----ilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi~ 203 (257)
T PF04018_consen 144 YLFLAGAIAACAMILPGISGSFILL----ILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGIL 203 (257)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHH----HHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHHH
Confidence 3556677665555555777664433 34443333333332222 477788899999999999
Q ss_pred HHHHHHHHcHHHHHHHHHH
Q 011797 417 AGQHVVRKIIAVLGRASII 435 (477)
Q Consensus 417 iGa~l~~kl~~~~~r~~li 435 (477)
.-+|+.+++=+++.+..+.
T Consensus 204 ~~skll~~ll~~~~~~t~~ 222 (257)
T PF04018_consen 204 LFSKLLSYLLKRYRSQTYA 222 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776543
No 10
>COG2119 Predicted membrane protein [Function unknown]
Probab=81.04 E-value=51 Score=31.20 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 204 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~ 204 (477)
|--..+.-......+.+.+|.+....+|++...+..++..+..++++..
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 5566777788888999999999999999999999999988888776653
No 11
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=76.17 E-value=90 Score=31.34 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCC-------CCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 011797 124 ATAISKCMIMGAAGSTVYYNLRLRHPT-------LDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVT 188 (477)
Q Consensus 124 Av~ts~~~i~~~s~~~~~~~~~~~~p~-------~~~plId~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~ 188 (477)
+.......++++-++-.++++++=.+. .|+..-+|+..+...++.+|-+++|..+...+......
T Consensus 43 ~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~ 114 (270)
T COG1968 43 GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLFN 114 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHccC
Confidence 555666677777777666655321110 11111127788888999999999998888766654443
No 12
>COG3619 Predicted membrane protein [Function unknown]
Probab=69.67 E-value=72 Score=31.15 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCChhhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 011797 118 GFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVT 188 (477)
Q Consensus 118 g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~ 188 (477)
|.|.....-|.....++..+.... +.++ +....||..-..+..+-+.|++.|+.+...+-+..+-
T Consensus 137 g~~~~~t~~TGnl~~~~~~l~~~l---~~k~---~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~ 201 (226)
T COG3619 137 GAPYGTTYVTGNLKSAGRGLGRYL---SGKD---KEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALW 201 (226)
T ss_pred CccccchhhhhhHHHHHHHHHHHH---hccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444444445545554444433 2222 2235889999999999999999999999888766544
No 13
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=64.91 E-value=1.6e+02 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHH
Q 011797 157 DYDLALLFQPMLMLGISIGVAFNVMFADWMV-TVLLIILFIGTSTKAL 203 (477)
Q Consensus 157 d~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l-~~l~~i~ll~~~~~~~ 203 (477)
|+++...+.++++|.+++|..+...+++..- ....+..+++.+..+.
T Consensus 84 ~~~l~~~iivatiP~~i~Gl~l~~~i~~~~~~~~~i~~~Lii~GilL~ 131 (276)
T PRK12554 84 DARFGWYIIIGTIPAGVLGLLFKDRIETVLRDLRIVAIALIVTGVLLW 131 (276)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5788888899999999999888877655311 1345555555554443
No 14
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=53.85 E-value=1.4e+02 Score=29.81 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTW 210 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~ 210 (477)
+--.-...+.+++++.+.+|-..-..+|..+-..+-++++++.+++++..+.+.-
T Consensus 101 Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~ 155 (294)
T KOG2881|consen 101 VFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMS 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4444555667788889999987778888888788888888899999998876543
No 15
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.09 E-value=52 Score=31.14 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 205 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~ 205 (477)
+--...+-+.+.++++...|-+++..+|++.++.+-++++++.+...++.
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999999999999999998888888766644
No 16
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=52.03 E-value=2.2e+02 Score=27.19 Aligned_cols=46 Identities=7% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhh
Q 011797 162 LLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGI 207 (477)
Q Consensus 162 ~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~ 207 (477)
.....+..+|..+|..+..++|+++-.++=++++++.+.++++++.
T Consensus 38 ~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 38 VISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566778888888888888887788888999999999987754
No 17
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=50.41 E-value=51 Score=26.53 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIG 197 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~ 197 (477)
+-.....-+.....++..+|.++.+++|++.++++-+++++.
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 445566777888899999999999999999999988877664
No 18
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=49.09 E-value=4e+02 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFN 179 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~ 179 (477)
-+|+....+....++|..++.++.
T Consensus 327 ~~W~~~~~lt~~~~P~~~~~~~~~ 350 (521)
T PF02990_consen 327 KKWKKNSILTSLLFPGILFSIFFI 350 (521)
T ss_pred CceeehhhHHHHHHHHHHHHHHHH
Confidence 478887777777777777776553
No 19
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=48.20 E-value=1e+02 Score=22.95 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011797 371 PQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRK 424 (477)
Q Consensus 371 ~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~k 424 (477)
+.+..|...+......+......+.....-.+.++.+..-+++|+..-+|..+|
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456778888888888777777777665566788888888899988888777653
No 20
>PRK11588 hypothetical protein; Provisional
Probab=46.89 E-value=4e+02 Score=29.32 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcH-HHHHHHHHHHHHHHHH
Q 011797 415 AFAGQHVVRKII-AVLGRASIIVFILALT 442 (477)
Q Consensus 415 a~iGa~l~~kl~-~~~~r~~lii~il~~~ 442 (477)
...+..-.-+++ +||+|...-.+++...
T Consensus 463 ~lm~~Laia~Ipy~kW~Kf~~pl~~i~~v 491 (506)
T PRK11588 463 SLMATLGVCRVDFGNWLKFIWRFLLLLFI 491 (506)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 334444344454 5788876665544443
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.29 E-value=37 Score=28.51 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011797 19 MVFLGLIMMEKLSNAERL 36 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (477)
++++++++++.-++|+++
T Consensus 11 l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 11 LLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHhhhhhHHh
Confidence 334444444443444433
No 22
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.11 E-value=3.5e+02 Score=33.24 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhcc
Q 011797 340 FCGIVAGMVGGLLGLG 355 (477)
Q Consensus 340 ~~G~~aG~isGllGiG 355 (477)
+...++.++-+++|++
T Consensus 67 VGA~LAD~L~~LFGl~ 82 (1355)
T PRK10263 67 PGAWLADTLFFIFGVM 82 (1355)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3445566777778853
No 23
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=43.16 E-value=3.3e+02 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011797 157 DYDLALLFQPMLMLGISIGVAFNVMF 182 (477)
Q Consensus 157 d~~l~~~l~~~~l~Ga~lGa~l~~~l 182 (477)
-|+....+..|+++|+++|......-
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999998776544
No 24
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=40.96 E-value=3.8e+02 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHH
Q 011797 157 DYDLALLFQPMLMLGISIGVAFNVMFADWMVT--VLLIILFIGTSTKAL 203 (477)
Q Consensus 157 d~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~--~l~~i~ll~~~~~~~ 203 (477)
|+++...+.++++|-+++|..+-..+++...+ ...++.+++.+..++
T Consensus 77 ~~~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~~~~v~~~Lii~gilL~ 125 (255)
T TIGR00753 77 DLLLLKLILLGLIPTVVLGLLFKDLIKSLLFNFLLTVVIALIVGAGLLI 125 (255)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 67888889999999999998887776553322 345666666655443
No 25
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=40.50 E-value=1.8e+02 Score=27.76 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFNVMFAD 184 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~~~lp~ 184 (477)
--++-+.+-..+.++|.++|+.+...++.
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34677777778888899999988877743
No 26
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=40.48 E-value=4.6e+02 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhHHHHHHHhhccCCC
Q 011797 444 FVSAISLGGFGIENMVKKLKNQEYM 468 (477)
Q Consensus 444 ~is~i~l~~~~i~~~i~~~~~~~~~ 468 (477)
.+.++.+-.++..+..+-+-||++|
T Consensus 387 ~ma~l~~~~i~~~~w~k~~~~~~~~ 411 (433)
T PRK09412 387 LLAAVEMDDTGTTRIGKYVFNHSFM 411 (433)
T ss_pred HHHHHhccCCCcchhhhhhcCCccc
Confidence 4555555555666666666777654
No 27
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=38.74 E-value=5.7e+02 Score=28.17 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcccccchhc-hHHHHHHHhCCChhhHhHHHHHH
Q 011797 87 GSIVGFFGAALGSVGGVGGGGI-FVPMLTLIIGFDPKSATAISKCM 131 (477)
Q Consensus 87 ~~~ig~lag~i~~~~GvGGG~i-~vPiL~~~~g~~~~~Av~ts~~~ 131 (477)
.++.-.+++++=+++|+|-... ..|+|.. +|+||-.|+..+++.
T Consensus 104 lli~~~Fg~flEgaaGFGtpvAI~aplLv~-LGf~P~~Aa~l~Li~ 148 (522)
T PF02652_consen 104 LLIAFGFGAFLEGAAGFGTPVAIAAPLLVA-LGFPPLQAAALCLIG 148 (522)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHH-cCCChHHHHHHHHHH
Confidence 3334446678888889998864 6777776 899999999998875
No 28
>COG1288 Predicted membrane protein [Function unknown]
Probab=37.53 E-value=4.7e+02 Score=28.30 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=22.6
Q ss_pred hhcccccc-----hhchHHHHHHHhCCChhhHhHHHHHHH
Q 011797 98 GSVGGVGG-----GGIFVPMLTLIIGFDPKSATAISKCMI 132 (477)
Q Consensus 98 ~~~~GvGG-----G~i~vPiL~~~~g~~~~~Av~ts~~~i 132 (477)
++..|++= -.+.+|++.. +|+|+-+++++-.+..
T Consensus 149 Gt~~Gm~EEaiaFypIliPv~ia-lGyDsi~~va~i~lgt 187 (481)
T COG1288 149 GTVFGMGEEAIAFYPILIPLMVA-LGYDSITGVAIIYIGT 187 (481)
T ss_pred cccccchHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHh
Confidence 44445542 3456777776 7999998888766544
No 29
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=37.44 E-value=1.1e+02 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHH
Q 011797 404 AAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFIL 439 (477)
Q Consensus 404 ~l~l~~g~iiGa~iGa~l~~kl~~~~~r~~lii~il 439 (477)
.+.+.....++..+|..+.+++|+++.+..-.++.+
T Consensus 40 ~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl 75 (78)
T PF01169_consen 40 TLALALATGLAVLLGSWLASRIPERYIKWVAGALFL 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 345666778899999999999999999987665544
No 30
>PTZ00370 STEVOR; Provisional
Probab=35.70 E-value=2.6e+02 Score=28.32 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 011797 169 MLGISIGVAFNVMFAD---WMVTVLLIILFIGTSTKALFKGIDTWKK 212 (477)
Q Consensus 169 l~Ga~lGa~l~~~lp~---~~l~~l~~i~ll~~~~~~~~~~~~~~kk 212 (477)
+.|...|+....+.|= .++.+++.++|++.=+.+.++.-+.||.
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4555666666666663 2334444444444333443333333443
No 31
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=35.47 E-value=4e+02 Score=25.34 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 011797 170 LGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 204 (477)
Q Consensus 170 ~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~ 204 (477)
..+.+|+.....+|++++.-+++.+-+..+++.+.
T Consensus 41 ~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~ 75 (191)
T PF03596_consen 41 LASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALF 75 (191)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44666788888999998888889999988877553
No 32
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=34.77 E-value=3.3e+02 Score=24.29 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhchHHHHHHHhCCChhhHhHHHHHHH
Q 011797 82 WKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMI 132 (477)
Q Consensus 82 ~~~vv~~~ig~lag~i~~~~GvGGG~i~vPiL~~~~g~~~~~Av~ts~~~i 132 (477)
-.+..++.+|++.|++=. +|...+..-.+..++..+...|...+.+..
T Consensus 20 ~~iA~g~AiG~fig~~P~---~g~~~~l~~~la~~~r~N~~aa~~~~~i~n 67 (154)
T PF09835_consen 20 HSIALGFAIGVFIGFLPI---FGLQTVLAIALALLFRLNKPAAILGTWISN 67 (154)
T ss_pred HHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 346777788887776532 256666666666667777776666655533
No 33
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=33.07 E-value=97 Score=24.20 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.6
Q ss_pred hchHHHHHHHhCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 011797 107 GIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNL 144 (477)
Q Consensus 107 ~i~vPiL~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~ 144 (477)
.+.+|++..++|.+..++-+.+........+-+..+|+
T Consensus 19 ~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~ 56 (67)
T PF05232_consen 19 LISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNW 56 (67)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999998888777766666666665
No 34
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=32.82 E-value=6.4e+02 Score=26.98 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=12.6
Q ss_pred hHHHHHHH---hCCChhhHhHHHH
Q 011797 109 FVPMLTLI---IGFDPKSATAISK 129 (477)
Q Consensus 109 ~vPiL~~~---~g~~~~~Av~ts~ 129 (477)
++|+...+ +|+|+....+...
T Consensus 108 f~PI~i~la~~lG~d~i~~~ai~~ 131 (430)
T TIGR00770 108 TLPVIAEVAKEQGIKPERPLSLAV 131 (430)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHH
Confidence 45554433 6899876665544
No 35
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=32.22 E-value=8.1e+02 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhcchhhhHHHHHH
Q 011797 338 YCFCGIVAGMVGGLLGLGGGFILGPLFL 365 (477)
Q Consensus 338 ~~~~G~~aG~isGllGiGGG~i~~PlLl 365 (477)
+..-+++.+++++++|+..|.+..+.+.
T Consensus 321 ~l~E~~~l~~~~~~lg~~l~~~~~~~~~ 348 (803)
T TIGR03434 321 LLTESLLLALAGGALGLLLAYWGLRLLL 348 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888777777777664
No 36
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=7.8e+02 Score=27.49 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 011797 156 IDYDLALLFQPMLMLGISIGVAFN 179 (477)
Q Consensus 156 Id~~l~~~l~~~~l~Ga~lGa~l~ 179 (477)
..|+...++.+...+|...+..+.
T Consensus 393 ~~wk~~~~lta~l~PGivf~~~f~ 416 (628)
T KOG1278|consen 393 REWKRNAILTAFLFPGIVFAIFFV 416 (628)
T ss_pred CcchhhHHhhhhhcchHHHHHHHH
Confidence 679999999999999999988653
No 37
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=30.66 E-value=6.7e+02 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=25.7
Q ss_pred hhhHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011797 357 GFILGPLFL--ELGIPPQVASATSTFAMTFSSSMSVVQYYLLD 397 (477)
Q Consensus 357 G~i~~PlLl--~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G 397 (477)
+.+.+|+.. .. +++++...--....+.+.+.+.++-+..+
T Consensus 21 ~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~ 62 (415)
T TIGR00801 21 GTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTG 62 (415)
T ss_pred HHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667778775 45 78877666666666666666666654433
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=30.01 E-value=5.9e+02 Score=26.37 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 011797 165 QPMLMLGISIGVAFNVMFA 183 (477)
Q Consensus 165 ~~~~l~Ga~lGa~l~~~lp 183 (477)
..-.++|..++..++.++|
T Consensus 130 ~l~~~vG~~~a~lvn~~~~ 148 (332)
T COG4129 130 FLLVFVGVGVAFLVNLVMP 148 (332)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 3455688888888887775
No 39
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.48 E-value=1.6e+02 Score=25.11 Aligned_cols=13 Identities=46% Similarity=1.124 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 011797 265 SLLLYVWLGFLAV 277 (477)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (477)
++|++.|+.|.+.
T Consensus 88 ~LL~lSW~gF~~Y 100 (103)
T PF11169_consen 88 GLLVLSWIGFIAY 100 (103)
T ss_pred HHHHHHHHHHHHH
Confidence 4788889888753
No 40
>COG4280 Predicted membrane protein [Function unknown]
Probab=29.27 E-value=4.7e+02 Score=25.24 Aligned_cols=34 Identities=3% Similarity=-0.002 Sum_probs=28.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 011797 180 VMFADWMVTVLLIILFIGTSTKALFKGIDTWKKE 213 (477)
Q Consensus 180 ~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke 213 (477)
..+|-+.+++..+++++..+.+-.+|+.+.+++.
T Consensus 59 ~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~ 92 (236)
T COG4280 59 YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGI 92 (236)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4568899999999999999999998887776643
No 41
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=28.62 E-value=7e+02 Score=26.10 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Q 011797 325 KEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYA 404 (477)
Q Consensus 325 ~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~ 404 (477)
.++..-.++++......+++.|...-+.++..+.++.+.+ ++.++.-.....+.++-.
T Consensus 1 ~~~r~~~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l----------------------~a~~v~~~~~~~l~~P~~ 58 (352)
T COG3180 1 MPERVPIILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPL----------------------LAGIVAGLRGLTLPLPRG 58 (352)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----------------------HHHHHHHhccccccCChH
Q ss_pred HHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011797 405 AFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGF 453 (477)
Q Consensus 405 l~l~~g~iiGa~iGa~l~~kl~~~~~r~~lii~il~~~i~is~i~l~~~ 453 (477)
+..+.=.++|..+|+.+....-+...+....++.+.+..+.+++.++..
T Consensus 59 l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~l 107 (352)
T COG3180 59 LFKAGQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWL 107 (352)
T ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
No 42
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=26.53 E-value=1.2e+02 Score=30.46 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=25.5
Q ss_pred HHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 011797 144 LRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGT 198 (477)
Q Consensus 144 ~~~~~p~~~~plId~~l~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~ 198 (477)
+|++.|..++..++.+..... |......-.++.+..++.+.++..
T Consensus 107 rr~~~~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~l~viLvi~il~~ 151 (287)
T PF07760_consen 107 RRRRLPEEERFSVPFDRWSSS----------GSYLSNSRSDNVLNVILVISILAA 151 (287)
T ss_pred hcccCCccccccccchhcccc----------cccccccchHHHHHHHHHHHHHHH
Confidence 445557666666655543322 555555556777776666644443
No 43
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.52 E-value=3.8e+02 Score=22.43 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011797 370 PPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRK 424 (477)
Q Consensus 370 ~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~k 424 (477)
.+++..|.........++......+.....-.+.++.+...+++|+..-+|...+
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~ 84 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEK 84 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999988888888887777665566788889999999988887776654
No 44
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=26.39 E-value=7.7e+02 Score=27.23 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcccccchhc-hHHHHHHHhCCChhhHhHHHHHHHH
Q 011797 85 VVGSIVGFFGAALGSVGGVGGGGI-FVPMLTLIIGFDPKSATAISKCMIM 133 (477)
Q Consensus 85 vv~~~ig~lag~i~~~~GvGGG~i-~vPiL~~~~g~~~~~Av~ts~~~i~ 133 (477)
-+.++.-.+++++=+++|+|-... ..|+|.. +|++|-.|+.++++...
T Consensus 108 q~llI~~~Fg~flEg~aGFGtpvAI~aplLv~-LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 108 QVLLIGFCFGAFLEGAAGFGTPVAITAAILVG-LGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHHHHHhhccCCcHHHHHHHHHH-cCCChHHHHHHHHHHcC
Confidence 333344456788888889998766 4666665 89999999999988653
No 45
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=24.68 E-value=8.7e+02 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=22.8
Q ss_pred HHHHHHHHHH-HcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011797 414 AAFAGQHVVR-KIIAVLGRASIIVFILALTIFVSAISLGGF 453 (477)
Q Consensus 414 Ga~iGa~l~~-kl~~~~~r~~lii~il~~~i~is~i~l~~~ 453 (477)
..+++-.+++ .+.+...+.......+..++++.++.++.+
T Consensus 390 at~LlvgLa~v~~gdh~k~a~~wa~~~siv~l~~ai~~Gii 430 (433)
T COG2851 390 ATYLLVGLAKVDMGDHQKFALKWAWGISIVMLAIAILMGII 430 (433)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444443 333344444556667777778888877754
No 46
>PRK09695 glycolate transporter; Provisional
Probab=24.64 E-value=1.3e+02 Score=33.40 Aligned_cols=48 Identities=27% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhcccccchhch-HHHHHHHhCCChhhHhHHHHHHHH
Q 011797 85 VVGSIVGFFGAALGSVGGVGGGGIF-VPMLTLIIGFDPKSATAISKCMIM 133 (477)
Q Consensus 85 vv~~~ig~lag~i~~~~GvGGG~i~-vPiL~~~~g~~~~~Av~ts~~~i~ 133 (477)
-+.++.-.+++++=+++|+|-.... -|+|.. +|+||-.|+..+++...
T Consensus 117 Q~LlI~~~Fg~FlEg~aGFGtPvAI~aplLv~-LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 117 QVLLIGFSFGALLEGAAGFGAPVAITGALLVG-LGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH-cCCChHHHHHHHHHHcC
Confidence 3333444577889999999987765 566665 89999999998887653
No 47
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.56 E-value=4e+02 Score=21.99 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=44.5
Q ss_pred hcC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011797 366 ELG-IPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRK 424 (477)
Q Consensus 366 ~~g-l~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~k 424 (477)
..| -.+++++|...+.....++......+.....-.+.++.+...+++|+..=+|...|
T Consensus 25 v~GPt~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~ 84 (89)
T PRK06161 25 LRGPRAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLR 84 (89)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344 45899999999988888888777776655555788888888888888777766544
No 48
>PLN00151 potassium transporter; Provisional
Probab=24.41 E-value=6.7e+02 Score=29.37 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=51.9
Q ss_pred chhchHHHHHHHh---------CCC--hhhHhHH----HHHHHHHHHHHHHHHHHHhc-CCCCCCCcccHHHHHHHHHHH
Q 011797 105 GGGIFVPMLTLII---------GFD--PKSATAI----SKCMIMGAAGSTVYYNLRLR-HPTLDMPLIDYDLALLFQPML 168 (477)
Q Consensus 105 GG~i~vPiL~~~~---------g~~--~~~Av~t----s~~~i~~~s~~~~~~~~~~~-~p~~~~plId~~l~~~l~~~~ 168 (477)
-|=|++|..+.++ +|. .+.+.|- ...+.+.+.+.....+..++ + +-+-.......+.
T Consensus 466 ~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~-------~~~~~~f~~~F~~ 538 (852)
T PLN00151 466 MGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTN-------IFLVLCFPVVFLS 538 (852)
T ss_pred CCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCcc-------HHHHHHHHHHHHH
Confidence 4778888877652 332 2233332 23334444455544433322 2 2233334444455
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHH
Q 011797 169 MLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKK 218 (477)
Q Consensus 169 l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~ 218 (477)
+=+.++.+-+.++....++.++++.++..+. -.|+..++++.
T Consensus 539 ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM--------~~W~yG~~~~~ 580 (852)
T PLN00151 539 VELVFFSSVLSSVGDGGWIPLVFASVFLCIM--------YIWNYGSKLKY 580 (852)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 5566777777777777777777776655432 25665554443
No 49
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=24.29 E-value=4.3e+02 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHH
Q 011797 165 QPMLMLGISIGVAFNVMFADWM 186 (477)
Q Consensus 165 ~~~~l~Ga~lGa~l~~~lp~~~ 186 (477)
..++++|+.+|..+....|+..
T Consensus 40 i~Gt~iG~~~~~~~~~~~~~~~ 61 (128)
T PF13515_consen 40 ILGTLIGVVLGLLLLYLFPGNY 61 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCCHH
Confidence 6899999999999998888763
No 50
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=24.08 E-value=9.9e+02 Score=26.33 Aligned_cols=40 Identities=30% Similarity=0.560 Sum_probs=33.0
Q ss_pred HHHHHHhhhhcchhh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 011797 344 VAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 383 (477)
Q Consensus 344 ~aG~isGllGiGGG~-i~~PlLl~~gl~~~~A~ATs~~~~~ 383 (477)
+++|+-|..|-|.+. +..|+|..+|.+|-.|++.+.....
T Consensus 110 Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n~ 150 (522)
T PF02652_consen 110 FGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGNS 150 (522)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 467899999988885 6667888999999999999887543
No 51
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=23.71 E-value=1.7e+02 Score=27.38 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhcchhhhHHHHHHhcCCChHHHHHHHH
Q 011797 339 CFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATST 379 (477)
Q Consensus 339 ~~~G~~aG~isGllGiGGG~i~~PlLl~~gl~~~~A~ATs~ 379 (477)
+-..|+.|+++|++|--||.+.--.|.+.+.+....+|--.
T Consensus 134 PTV~FVSGiiGg~LGGiGGalvY~aL~~~~~t~~~gvA~m~ 174 (230)
T COG4060 134 PTVSFVSGIIGGLLGGIGGALVYYALYKVGLTMSAGVAGML 174 (230)
T ss_pred ceeeeehhhhhhhhcCccchhhHHHHHHHhcccchHHHHHH
Confidence 34567788888888744555555556677776544444333
No 52
>PRK01844 hypothetical protein; Provisional
Probab=23.67 E-value=1.9e+02 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHHHHH
Q 011797 406 FFTLVATFAAFAGQHVVRKIIAVLGRA 432 (477)
Q Consensus 406 ~l~~g~iiGa~iGa~l~~kl~~~~~r~ 432 (477)
..+++.++|..+|-.+++|.-++.++.
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666777766666553
No 53
>PLN00148 potassium transporter; Provisional
Probab=23.34 E-value=7.3e+02 Score=28.84 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=53.2
Q ss_pred hhchHHHHHHHh---------CCC--hhhHhHH----HHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHH
Q 011797 106 GGIFVPMLTLII---------GFD--PKSATAI----SKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLML 170 (477)
Q Consensus 106 G~i~vPiL~~~~---------g~~--~~~Av~t----s~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~~~l~~~~l~ 170 (477)
|=|++|..+.++ +|. .+.+.|- ...+.+.+.+........++.| +-+-.......+.+=
T Consensus 390 GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~------~~~~~~f~~~F~~ie 463 (785)
T PLN00148 390 GQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTFLMALVIIFVWQKS------IILAALFLLFFGFIE 463 (785)
T ss_pred CceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCcc------HHHHHHHHHHHHHHH
Confidence 788888887652 332 2333333 2334444445544443332210 223333444455555
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHHH
Q 011797 171 GISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKE 219 (477)
Q Consensus 171 Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~e 219 (477)
+.++++-+.+.....++.++++.++..+. -+|+..++++.|
T Consensus 464 ~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM--------~~W~~G~~~~~~ 504 (785)
T PLN00148 464 GVYLSAALMKVPQGGWVPLVLSAIFMSIM--------YIWHYGTRKKYN 504 (785)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 77777777777777778877776655432 256665544433
No 54
>TIGR00893 2A0114 d-galactonate transporter.
Probab=22.90 E-value=7.2e+02 Score=24.26 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011797 166 PMLMLGISIGVAFNVMF 182 (477)
Q Consensus 166 ~~~l~Ga~lGa~l~~~l 182 (477)
.+.++|..++..+....
T Consensus 129 ~g~~~~~~~~~~l~~~~ 145 (399)
T TIGR00893 129 LGGIIGGPLVGWILIHF 145 (399)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 44445555555444433
No 55
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=22.60 E-value=6.7e+02 Score=27.79 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHH
Q 011797 165 QPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKK 218 (477)
Q Consensus 165 ~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~ 218 (477)
....+=+.++++-+.+....-++.++++.++..+. .+|++.++.+.
T Consensus 392 ~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM--------~tW~~G~~~~~ 437 (534)
T PF02705_consen 392 FFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIM--------YTWRRGRKLLY 437 (534)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 33444467777777777777777777776655432 25666654443
No 56
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.50 E-value=2.6e+02 Score=23.77 Aligned_cols=26 Identities=12% Similarity=0.292 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHH
Q 011797 160 LALLFQPMLMLGISIGVAFNVMFADW 185 (477)
Q Consensus 160 l~~~l~~~~l~Ga~lGa~l~~~lp~~ 185 (477)
+.+.+.++.++|+.+|.++-.++|..
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34556677788888888888888753
No 57
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=22.28 E-value=3.2e+02 Score=19.97 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccH
Q 011797 159 DLALLFQPMLMLGISIGVAFNVMFAD 184 (477)
Q Consensus 159 ~l~~~l~~~~l~Ga~lGa~l~~~lp~ 184 (477)
.+...+..+.++|..+|-++-++++.
T Consensus 5 ~lg~~~~~~i~~g~~~G~~lD~~~~t 30 (55)
T PF09527_consen 5 QLGFTMAAPILVGFFLGYWLDKWFGT 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566677778888888888888876
No 58
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=21.77 E-value=2.5e+02 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.014 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Q 011797 169 MLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 205 (477)
Q Consensus 169 l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~ 205 (477)
+.-+..+++...++|++++--+++.+-++.++|....
T Consensus 51 ilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~ 87 (205)
T COG4300 51 ILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLIL 87 (205)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhc
Confidence 3456677788899999999988999999998877654
No 59
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=21.74 E-value=6.6e+02 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcHHHHHHH
Q 011797 400 PVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRA 432 (477)
Q Consensus 400 ~~~~~l~l~~g~iiGa~iGa~l~~kl~~~~~r~ 432 (477)
+.+....+.+..++++.+|+.+.+|+-+|++++
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~K 186 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFEK 186 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566677777888888888888887777653
No 60
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.51 E-value=69 Score=30.82 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=20.1
Q ss_pred HHHHHHHhhcccccchhchHHHHHH
Q 011797 91 GFFGAALGSVGGVGGGGIFVPMLTL 115 (477)
Q Consensus 91 g~lag~i~~~~GvGGG~i~vPiL~~ 115 (477)
+|+++.+.+.+||-||+++-=.|.-
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~ 161 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEG 161 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7999999999999999876555543
No 61
>PRK10420 L-lactate permease; Provisional
Probab=21.49 E-value=1.6e+02 Score=32.64 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcccccchhch-HHHHHHHhCCChhhHhHHHHHHHH
Q 011797 89 IVGFFGAALGSVGGVGGGGIF-VPMLTLIIGFDPKSATAISKCMIM 133 (477)
Q Consensus 89 ~ig~lag~i~~~~GvGGG~i~-vPiL~~~~g~~~~~Av~ts~~~i~ 133 (477)
+.-.+++++=+++|+|-.... .|+|.. +|++|-.|+..+++...
T Consensus 121 I~~~Fg~FlEg~AGFGtpvAI~aplLv~-LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 121 VGFCFGAFLEGAAGFGAPVAITAALLVG-LGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHH-cCCChHHHHHHHHHHcC
Confidence 344567888888899987765 566665 89999999999887664
No 62
>PRK00523 hypothetical protein; Provisional
Probab=21.44 E-value=2.3e+02 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHHHH
Q 011797 406 FFTLVATFAAFAGQHVVRKIIAVLGR 431 (477)
Q Consensus 406 ~l~~g~iiGa~iGa~l~~kl~~~~~r 431 (477)
..+++.++|...|-.+++|.-++.++
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666776666655
No 63
>PRK11469 hypothetical protein; Provisional
Probab=21.28 E-value=6.9e+02 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 011797 163 LFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKG 206 (477)
Q Consensus 163 ~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~ 206 (477)
.-..+.++|..+|..+..++|+.- .++-..++++.+.++++++
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334556677778888888877744 7777788889999998764
No 64
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.89 E-value=45 Score=23.58 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=13.0
Q ss_pred hcccccchhchHHHHHH
Q 011797 99 SVGGVGGGGIFVPMLTL 115 (477)
Q Consensus 99 ~~~GvGGG~i~vPiL~~ 115 (477)
+++|+|++...+|+...
T Consensus 21 ~~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 21 AVGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34467889999999875
No 65
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=20.89 E-value=9.7e+02 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhhHH
Q 011797 166 PMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKK 218 (477)
Q Consensus 166 ~~~l~Ga~lGa~l~~~lp~~~l~~l~~i~ll~~~~~~~~~~~~~~kke~~~~~ 218 (477)
...+=++++++-+.+....-++.++++.++..+. -+|++.++.+.
T Consensus 430 f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM--------~~W~~G~~~~~ 474 (688)
T TIGR00794 430 FLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVM--------TTWRYGRFRKL 474 (688)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 4444466777777777777778877776655432 25666554433
No 66
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.77 E-value=1.1e+03 Score=27.28 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcCCc
Q 011797 19 MVFLGLIMMEKLSNAERLLKDKDPQVFADE 48 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (477)
=..+++.+.+++.-+...++.++++..-..
T Consensus 121 e~~l~~~l~~if~~~~~~~~~~~~~~~~~~ 150 (764)
T TIGR02865 121 EASLSFVLYYIFNYSIPCLKNGRTKHLLTN 150 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCCcH
Confidence 355566677777777777777776655444
No 67
>TIGR01112 mtrD N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D. coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.76 E-value=3e+02 Score=26.32 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=27.5
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHhhcccccchhchHHHHHHHhCCChh
Q 011797 68 ESSYEPVWPEMQFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPK 122 (477)
Q Consensus 68 ~~~~~~~w~~~~~~~~~vv~~~ig~lag~i~~~~GvGGG~i~vPiL~~~~g~~~~ 122 (477)
+-++-|--|..+| +-|.++|++ +|+||+.++..++.. ++++.
T Consensus 126 pGTeGHGiPtvsf--------VsG~IGg~l---GGiGG~L~Y~al~~~--~~~~~ 167 (223)
T TIGR01112 126 PGTEGHGIPTVSF--------VSGIIGGAL---GGIGGALVYYALIEV--GLSPG 167 (223)
T ss_pred CCCcCCCCceEee--------ehhhhhhhh---cccchhHHHHHHHhc--ccCcc
Confidence 3445555565543 356666666 489999999999984 45543
No 68
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=20.61 E-value=6.9e+02 Score=23.22 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhc-c-ccccchHHHHHHhH--hHHHHHHHHHHHHHHHhh
Q 011797 260 YWKELSLLLYVWLGFLAVQLAKE-Y-VVPCSITYWILNAL--QVPIAVSVALFEAICLYK 315 (477)
Q Consensus 260 ~w~~l~~~~~~~~~~~~~~i~~~-~-~~~cs~~yw~~~~~--~~~v~~~~~~~~~~~~~~ 315 (477)
.|+++. ..|..|....-.-| + -.++|...|+..=. ..|..+.+...+...++|
T Consensus 115 ~W~~lt---~~W~~fF~~~a~lN~~va~~~S~~~Wv~fk~fG~~~l~~~f~i~q~~~l~k 171 (176)
T PF04279_consen 115 GWRRLT---LRWALFFLFLAALNEYVAYNFSEDTWVNFKVFGLMGLTFLFVIAQIPYLRK 171 (176)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 576653 34444443333222 2 13467778887432 445555555555555554
No 69
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=20.21 E-value=4.9e+02 Score=21.33 Aligned_cols=56 Identities=7% Similarity=-0.062 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011797 369 IPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRK 424 (477)
Q Consensus 369 l~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~k 424 (477)
-.+.+..|.................+..-..-.+.++.+...+++|+..-+|...+
T Consensus 29 t~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~~ 84 (87)
T PRK12612 29 DILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIISG 84 (87)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999888888888777776655556788888888888888887776543
Done!