Query 011797
Match_columns 477
No_of_seqs 307 out of 2195
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 20.1 3.1E+02 0.011 27.1 8.3 33 393-425 121-153 (340)
2 3c02_A Aquaglyceroporin; membr 16.2 2.2E+02 0.0075 26.8 6.1 35 392-426 76-110 (258)
3 3llq_A Aquaporin Z 2; aquapori 15.9 1.8E+02 0.0062 27.5 5.4 33 393-425 98-130 (256)
4 2o9g_A Aquaporin Z; integral m 15.5 2E+02 0.0067 26.7 5.5 34 392-425 72-105 (234)
5 3gd8_A Aquaporin-4; proton exc 15.3 2E+02 0.0067 26.5 5.4 33 393-425 73-105 (223)
6 1ldf_A Glycerol uptake facilit 14.8 2.4E+02 0.0081 26.9 6.0 34 392-425 74-107 (281)
7 3d9s_A Aquaporin-5, AQP-5; aqu 14.8 2E+02 0.007 27.2 5.5 33 393-425 77-109 (266)
8 1j4n_A Aquaporin 1; membrane p 14.7 2.1E+02 0.007 27.2 5.5 34 392-425 84-117 (271)
9 2f2b_A Aquaporin AQPM; protein 14.6 2E+02 0.007 26.7 5.4 33 393-425 89-121 (246)
10 2w2e_A AQY1, aquaporin, aquapo 14.5 2.1E+02 0.0071 27.4 5.5 34 392-425 118-151 (279)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=20.06 E-value=3.1e+02 Score=27.10 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 393 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 393 ~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
.+..|+++|.-.+..++..++|+++|+.++.-+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999877554
No 2
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=16.21 E-value=2.2e+02 Score=26.77 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHcH
Q 011797 392 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 426 (477)
Q Consensus 392 ~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl~ 426 (477)
..+..|+++|......++..++|+.+|+.+++-+-
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 110 (258)
T 3c02_A 76 GLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLY 110 (258)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44567999999999999999999999998876553
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=15.93 E-value=1.8e+02 Score=27.48 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 393 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 393 ~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
.+..|+++|......++..++|+++|+.++.-+
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999887643
No 4
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=15.51 E-value=2e+02 Score=26.69 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 392 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 392 ~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
..+..|+++|......++..++|+.+|+.+++-+
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999877543
No 5
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=15.26 E-value=2e+02 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 393 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 393 ~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
.+..|+++|......++..++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345689999999999999999999999887543
No 6
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=14.85 E-value=2.4e+02 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 392 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 392 ~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
..+..|+++|......++..++|+++|+.++.-+
T Consensus 74 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 107 (281)
T 1ldf_A 74 ALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107 (281)
T ss_dssp HHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999999999999999877554
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=14.81 E-value=2e+02 Score=27.19 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 393 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 393 ~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
.+..|+++|......++..++|+++|+.+++-+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999887654
No 8
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=14.66 E-value=2.1e+02 Score=27.22 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 392 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 392 ~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
..+..|+++|......++..++|+++|+.+++.+
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999887654
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=14.64 E-value=2e+02 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 393 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 393 ~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
.+..|+++|......++..++|+.+|+.+++-+
T Consensus 89 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 89 LWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999877644
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=14.45 E-value=2.1e+02 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHc
Q 011797 392 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 425 (477)
Q Consensus 392 ~~~~~G~i~~~~~l~l~~g~iiGa~iGa~l~~kl 425 (477)
..+..|+++|......++..++|+++|+.+++-+
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999988899999999999998877653
Done!