BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011798
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 164/324 (50%), Gaps = 44/324 (13%)
Query: 65 LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH 124
L I+ G H+ A+ S + +WG E GQLG G E R P ++ L + S++CGA
Sbjct: 7 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD 66
Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVS 173
T A ++ S ++ WG +F RL G FTP I I Q++
Sbjct: 67 HTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
CG H +A++ G +Q+WG N+ GQLG G T + L P+ I+ + E +I V
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAF--------EGIRIKMV 166
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
+ G H+AAV+E+G++Y WG G G LG L L+P RV + G + VACG
Sbjct: 167 AAGAEHTAAVTEDGDLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWR 223
Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG 353
H+ +++ GALY +G S+ GQLG G LIP++ + + + ++ G
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGG 273
Query: 354 HSHTLVYMRDGRIHGWGYNSYGQA 377
HT+ DG+++GWG+N +GQ
Sbjct: 274 FRHTMALTSDGKLYGWGWNKFGQV 297
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 172/383 (44%), Gaps = 62/383 (16%)
Query: 26 WGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT-LF 84
WG GQ G E + P QL A + + + CG +HT A + G ++
Sbjct: 28 WGRGEDGQLGHGDAEDRPS-PTQLS-------ALDGHQIVSVTCGADHTVAYSQSGMEVY 79
Query: 85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCG-AHCTAAIAEPRENDGTISTSR 143
+WG +FG+LG G P +K L +K I+CG +HC A E G + +
Sbjct: 80 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTME-----GEVQS-- 132
Query: 144 LWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVSCGSVHVVALSECGLLQAWG 192
WG+NQ +L G + P I I V+ G+ H A++E G L WG
Sbjct: 133 ---WGRNQNG---QLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 186
Query: 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTW 252
+ YG LG G + L RV EK++ V+CG H+ +VS +G +YT+
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGG---------EKMSMVACGWRHTISVSYSGALYTY 237
Query: 253 GLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312
G GQLGH L+ L+P ++ AL FI ++ G H+ ALTS G LY WG ++
Sbjct: 238 GWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLV--ACGHSHTLVYMRDGRIHGW 369
GQ+G+G S P+ V P+ ++V +CG HTL + W
Sbjct: 295 GQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 341
Query: 370 GYNSYGQAANEKSTYAWYPSPVD 392
G + GQ +S +P ++
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIE 364
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 148/312 (47%), Gaps = 34/312 (10%)
Query: 23 IYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82
+Y WG+ G+ G G L P LP A R IACG H AV +G
Sbjct: 78 VYSWGWGDFGRLGH-GNSSDLFTP--LP-----IKALHGIRIKQIACGDSHCLAVTMEGE 129
Query: 83 LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTS 142
+ +WG N+ GQLG G E P+K++ + +K ++ GA TAA+ E DG +
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE----DGDLYG- 184
Query: 143 RLWVWGQ----NQGSNFPRLFWGAFTPN--TIICQVSCGSVHVVALSECGLLQAWGYNEY 196
W WG+ G RL T + V+CG H +++S G L +G+++Y
Sbjct: 185 --WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 197 GQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGS 256
GQLG G + L ++ EA I+Q+S G H+ A++ +G++Y WG
Sbjct: 243 GQLGHGDLEDHLIPHKL---------EALSNSFISQISGGFRHTMALTSDGKLYGWGWNK 293
Query: 257 VGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLG 316
GQ+G + + + P +V D + V+CG H+ A+T + ++AWG GQLG
Sbjct: 294 FGQVG---VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Query: 317 LGPQT-RSFSLI 327
+G R+F I
Sbjct: 351 IGESVDRNFPKI 362
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 165 PNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEA 224
P + +S G+ H VAL ++ +WG E GQLG G E P + A
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLS--------A 52
Query: 225 PELEKITQVSCGEYHSAAVSENG-EVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI 283
+ +I V+CG H+ A S++G EVY+WG G G+LGH + P + AL GI
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGI 109
Query: 284 FIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV 343
IK +ACG H A+T +G + +WG +Q GQLGLG S L+P + F I I
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQA-FEGIRI--- 163
Query: 344 PNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAA 403
++VA G HT DG ++GWG+ YG T P V GE + A
Sbjct: 164 ----KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 404 GG 405
G
Sbjct: 220 CG 221
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 228 EKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPR--RVVALDGIFI 285
K+ +S G HS A+ V +WG G GQLGH GD E P ++ ALDG I
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQI 58
Query: 286 KDVACGGVHSCALTSKGA-LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVP 344
V CG H+ A + G +Y+WG G+LG G + F+ +P ++ R
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-------- 110
Query: 345 NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAA 403
++ +ACG SH L +G + WG N GQ + + P + G ++ +AA
Sbjct: 111 --IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 168
Query: 404 GGGHSAVLADACSL 417
G H+A + + L
Sbjct: 169 GAEHTAAVTEDGDL 182
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 17 IPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAA 76
+ + +Y WG+N GQ G Q + P+ + + + ++CG HT A
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--------DQKVVQVSCGWRHTLA 331
Query: 77 VASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL 111
V +F WG GQLG G R P+ ++ L
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 164/323 (50%), Gaps = 44/323 (13%)
Query: 65 LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH 124
L I+ G H+ A+ S + +WG E GQLG G E R P ++ L + S++CGA
Sbjct: 19 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD 78
Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVS 173
T A ++ S ++ WG +F RL G FTP I I Q++
Sbjct: 79 HTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 127
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
CG H +A++ G +Q+WG N+ GQLG G T + L P+ I+ + E +I V
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAF--------EGIRIKMV 178
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
+ G H+AAV+E+G++Y WG G G LG L L+P RV + G + VACG
Sbjct: 179 AAGAEHTAAVTEDGDLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWR 235
Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG 353
H+ +++ GALY +G S+ GQLG G LIP++ + + + ++ G
Sbjct: 236 HTISVSYSGALYTYGWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGG 285
Query: 354 HSHTLVYMRDGRIHGWGYNSYGQ 376
HT+ DG+++GWG+N +GQ
Sbjct: 286 WRHTMALTSDGKLYGWGWNKFGQ 308
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 172/383 (44%), Gaps = 62/383 (16%)
Query: 26 WGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT-LF 84
WG GQ G E + P QL A + + + CG +HT A + G ++
Sbjct: 40 WGRGEDGQLGHGDAEDRPS-PTQLS-------ALDGHQIVSVTCGADHTVAYSQSGMEVY 91
Query: 85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCG-AHCTAAIAEPRENDGTISTSR 143
+WG +FG+LG G P +K L +K I+CG +HC A E G + +
Sbjct: 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTME-----GEVQS-- 144
Query: 144 LWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVSCGSVHVVALSECGLLQAWG 192
WG+NQ +L G + P I I V+ G+ H A++E G L WG
Sbjct: 145 ---WGRNQNG---QLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 198
Query: 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTW 252
+ YG LG G + L RV EK++ V+CG H+ +VS +G +YT+
Sbjct: 199 WGRYGNLGLGDRTDRLVPERVTSTGG---------EKMSMVACGWRHTISVSYSGALYTY 249
Query: 253 GLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312
G GQLGH L+ L+P ++ AL FI ++ G H+ ALTS G LY WG ++
Sbjct: 250 GWSKYGQLGHGDLE---DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLV--ACGHSHTLVYMRDGRIHGW 369
GQ+G+G S P+ V P+ ++V +CG HTL + W
Sbjct: 307 GQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 353
Query: 370 GYNSYGQAANEKSTYAWYPSPVD 392
G + GQ +S +P ++
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIE 376
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 150/313 (47%), Gaps = 36/313 (11%)
Query: 23 IYVWGYNHSGQTGRKGRERQLRIPKQLPPE-LFGCPAGANSRWLDIACGHEHTAAVASDG 81
+Y WG+ G+ G G L P LP + L G R IACG H AV +G
Sbjct: 90 VYSWGWGDFGRLGH-GNSSDLFTP--LPIKALHGI------RIKQIACGDSHCLAVTMEG 140
Query: 82 TLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTIST 141
+ +WG N+ GQLG G E P+K++ + +K ++ GA TAA+ E DG +
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE----DGDLYG 196
Query: 142 SRLWVWGQ----NQGSNFPRLFWGAFTPN--TIICQVSCGSVHVVALSECGLLQAWGYNE 195
W WG+ G RL T + V+CG H +++S G L +G+++
Sbjct: 197 ---WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 253
Query: 196 YGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLG 255
YGQLG G + L ++ EA I+Q+S G H+ A++ +G++Y WG
Sbjct: 254 YGQLGHGDLEDHLIPHKL---------EALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 256 SVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQL 315
GQ+G + + + P +V D + V+CG H+ A+T + ++AWG GQL
Sbjct: 305 KFGQVG---VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361
Query: 316 GLGPQT-RSFSLI 327
G+G R+F I
Sbjct: 362 GIGESVDRNFPKI 374
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 165 PNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEA 224
P + +S G+ H VAL ++ +WG E GQLG G E P + A
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLS--------A 64
Query: 225 PELEKITQVSCGEYHSAAVSENG-EVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI 283
+ +I V+CG H+ A S++G EVY+WG G G+LGH + P + AL GI
Sbjct: 65 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGI 121
Query: 284 FIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV 343
IK +ACG H A+T +G + +WG +Q GQLGLG S L+P + F I I
Sbjct: 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQA-FEGIRI--- 175
Query: 344 PNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAA 403
++VA G HT DG ++GWG+ YG T P V GE + A
Sbjct: 176 ----KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 231
Query: 404 GG 405
G
Sbjct: 232 CG 233
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPR--RVVALDGIFIK 286
K+ +S G HS A+ V +WG G GQLGH GD E P ++ ALDG I
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIV 71
Query: 287 DVACGGVHSCALTSKGA-LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPN 345
V CG H+ A + G +Y+WG G+LG G + F+ +P ++ R
Sbjct: 72 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR--------- 122
Query: 346 GVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAG 404
++ +ACG SH L +G + WG N GQ + + P + G ++ +AAG
Sbjct: 123 -IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG 181
Query: 405 GGHSAVLADACSL 417
H+A + + L
Sbjct: 182 AEHTAAVTEDGDL 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 17 IPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAA 76
+ + +Y WG+N GQ G Q + P+ + + + ++CG HT A
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--------DQKVVQVSCGWRHTLA 343
Query: 77 VASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPREND 136
V +F WG GQLG G R P+ ++ L + + G H ++ +P
Sbjct: 344 VTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDG----ASGQHIESSNIDPSSGK 399
Query: 137 GTIS 140
+S
Sbjct: 400 SWVS 403
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 164/324 (50%), Gaps = 44/324 (13%)
Query: 65 LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH 124
L I+ G H+ A+ S + +WG E GQLG G E R P ++ L + S++CGA
Sbjct: 7 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD 66
Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVS 173
T A ++ S ++ WG +F RL G FTP I I Q++
Sbjct: 67 HTVAYSQ--------SGMEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
CG H +A++ G +Q+WG N+ GQLG G T + L P+ I+ + E +I V
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAF--------EGIRIKMV 166
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
+ G H+AAV+E+G++Y WG G G LG L L+P RV + G + VACG
Sbjct: 167 AAGAEHTAAVTEDGDLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWR 223
Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG 353
H+ +++ GALY +G S+ GQLG G LIP++ + + + ++ G
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGG 273
Query: 354 HSHTLVYMRDGRIHGWGYNSYGQA 377
HT+ DG+++GWG+N +GQ
Sbjct: 274 WRHTMALTSDGKLYGWGWNKFGQV 297
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 173/383 (45%), Gaps = 62/383 (16%)
Query: 26 WGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT-LF 84
WG GQ G E + P QL A + + + CG +HT A + G ++
Sbjct: 28 WGRGEDGQLGHGDAEDRPS-PTQLS-------ALDGHQIVSVTCGADHTVAYSQSGMEVY 79
Query: 85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCG-AHCTAAIAEPRENDGTISTSR 143
+WG +FG+LG G P +K L +K I+CG +HC A E G + +
Sbjct: 80 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTME-----GEVQS-- 132
Query: 144 LWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVSCGSVHVVALSECGLLQAWG 192
WG+NQ +L G + P I I V+ G+ H A++E G L WG
Sbjct: 133 ---WGRNQNG---QLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 186
Query: 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTW 252
+ YG LG G + L RV + EK++ V+CG H+ +VS +G +YT+
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVT---------STGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 253 GLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312
G GQLGH L+ L+P ++ AL FI ++ G H+ ALTS G LY WG ++
Sbjct: 238 GWSKYGQLGHGDLE---DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLV--ACGHSHTLVYMRDGRIHGW 369
GQ+G+G S P+ V P+ ++V +CG HTL + W
Sbjct: 295 GQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 341
Query: 370 GYNSYGQAANEKSTYAWYPSPVD 392
G + GQ +S +P ++
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIE 364
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 148/312 (47%), Gaps = 34/312 (10%)
Query: 23 IYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82
+Y WG+ G+ G G L P LP + R IACG H AV +G
Sbjct: 78 VYSWGWGDFGRLGH-GNSSDLFTP--LPIKAL-----HGIRIKQIACGDSHCLAVTMEGE 129
Query: 83 LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTS 142
+ +WG N+ GQLG G E P+K++ + +K ++ GA TAA+ E DG +
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE----DGDLYG- 184
Query: 143 RLWVWGQ----NQGSNFPRLFWGAFTPN--TIICQVSCGSVHVVALSECGLLQAWGYNEY 196
W WG+ G RL T + V+CG H +++S G L +G+++Y
Sbjct: 185 --WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 197 GQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGS 256
GQLG G + L ++ EA I+Q+S G H+ A++ +G++Y WG
Sbjct: 243 GQLGHGDLEDHLIPHKL---------EALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 293
Query: 257 VGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLG 316
GQ+G + + + P +V D + V+CG H+ A+T + ++AWG GQLG
Sbjct: 294 FGQVG---VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Query: 317 LGPQT-RSFSLI 327
+G R+F I
Sbjct: 351 IGESVDRNFPKI 362
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 165 PNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEA 224
P + +S G+ H VAL ++ +WG E GQLG G E P + A
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLS--------A 52
Query: 225 PELEKITQVSCGEYHSAAVSENG-EVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI 283
+ +I V+CG H+ A S++G EVY+WG G G+LGH + P + AL GI
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGI 109
Query: 284 FIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV 343
IK +ACG H A+T +G + +WG +Q GQLGLG S L+P + F I I
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQA-FEGIRI--- 163
Query: 344 PNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAA 403
++VA G HT DG ++GWG+ YG T P V GE + A
Sbjct: 164 ----KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 404 GG 405
G
Sbjct: 220 CG 221
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 228 EKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPR--RVVALDGIFI 285
K+ +S G HS A+ V +WG G GQLGH GD E P ++ ALDG I
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQI 58
Query: 286 KDVACGGVHSCALTSKGA-LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVP 344
V CG H+ A + G +Y+WG G+LG G + F+ +P ++ R
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-------- 110
Query: 345 NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAA 403
++ +ACG SH L +G + WG N GQ + + P + G ++ +AA
Sbjct: 111 --IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 168
Query: 404 GGGHSAVLADACSL 417
G H+A + + L
Sbjct: 169 GAEHTAAVTEDGDL 182
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 17 IPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAA 76
+ + +Y WG+N GQ G Q + P+ + + + ++CG HT A
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--------DQKVVQVSCGWRHTLA 331
Query: 77 VASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL 111
V +F WG GQLG G R P+ ++ L
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 162/324 (50%), Gaps = 44/324 (13%)
Query: 65 LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH 124
L I+ G H+ A+ S + +WG E GQLG G E R P ++ L + S++CGA
Sbjct: 9 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD 68
Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVS 173
T A ++ S ++ WG +F RL G FTP I I Q++
Sbjct: 69 HTVAYSQ--------SGXEVYSWGWG---DFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 117
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
CG H +A++ G +Q+WG N+ GQLG G T + L P+ I+ + E +I V
Sbjct: 118 CGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAF--------EGIRIKXV 168
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
+ G H+AAV+E+G++Y WG G G LG L L+P RV + G VACG
Sbjct: 169 AAGAEHTAAVTEDGDLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKXSXVACGWR 225
Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG 353
H+ +++ GALY +G S+ GQLG G LIP++ + + + ++ G
Sbjct: 226 HTISVSYSGALYTYGWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGG 275
Query: 354 HSHTLVYMRDGRIHGWGYNSYGQA 377
HT DG+++GWG+N +GQ
Sbjct: 276 ARHTXALTSDGKLYGWGWNKFGQV 299
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 172/383 (44%), Gaps = 62/383 (16%)
Query: 26 WGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT-LF 84
WG GQ G E + P QL A + + + CG +HT A + G ++
Sbjct: 30 WGRGEDGQLGHGDAEDRPS-PTQLS-------ALDGHQIVSVTCGADHTVAYSQSGXEVY 81
Query: 85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCG-AHCTAAIAEPRENDGTISTSR 143
+WG +FG+LG G P +K L +K I+CG +HC A E G + +
Sbjct: 82 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXE-----GEVQS-- 134
Query: 144 LWVWGQNQGSNFPRLFWG----AFTPNTI-------ICQVSCGSVHVVALSECGLLQAWG 192
WG+NQ +L G + P I I V+ G+ H A++E G L WG
Sbjct: 135 ---WGRNQNG---QLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWG 188
Query: 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTW 252
+ YG LG G + L RV + EK + V+CG H+ +VS +G +YT+
Sbjct: 189 WGRYGNLGLGDRTDRLVPERVT---------STGGEKXSXVACGWRHTISVSYSGALYTY 239
Query: 253 GLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312
G GQLGH L+ L+P ++ AL FI ++ G H+ ALTS G LY WG ++
Sbjct: 240 GWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKF 296
Query: 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLV--ACGHSHTLVYMRDGRIHGW 369
GQ+G+G S P+ V P+ ++V +CG HTL + W
Sbjct: 297 GQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 343
Query: 370 GYNSYGQAANEKSTYAWYPSPVD 392
G + GQ +S +P ++
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIE 366
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 34/312 (10%)
Query: 23 IYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82
+Y WG+ G+ G G L P LP + R IACG H AV +G
Sbjct: 80 VYSWGWGDFGRLGH-GNSSDLFTP--LPIKAL-----HGIRIKQIACGDSHCLAVTXEGE 131
Query: 83 LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTS 142
+ +WG N+ GQLG G E P+K++ + +K ++ GA TAA+ E DG +
Sbjct: 132 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE----DGDLYG- 186
Query: 143 RLWVWGQ----NQGSNFPRLFWGAFTPN--TIICQVSCGSVHVVALSECGLLQAWGYNEY 196
W WG+ G RL T V+CG H +++S G L +G+++Y
Sbjct: 187 --WGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Query: 197 GQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGS 256
GQLG G + L ++ EA I+Q+S G H+ A++ +G++Y WG
Sbjct: 245 GQLGHGDLEDHLIPHKL---------EALSNSFISQISGGARHTXALTSDGKLYGWGWNK 295
Query: 257 VGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLG 316
GQ+G + + + P +V D + V+CG H+ A+T + ++AWG GQLG
Sbjct: 296 FGQVG---VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Query: 317 LGPQT-RSFSLI 327
+G R+F I
Sbjct: 353 IGESVDRNFPKI 364
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 165 PNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEA 224
P + +S G+ H VAL ++ +WG E GQLG G E P + A
Sbjct: 4 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLS--------A 54
Query: 225 PELEKITQVSCGEYHSAAVSENG-EVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI 283
+ +I V+CG H+ A S++G EVY+WG G G+LGH + P + AL GI
Sbjct: 55 LDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGI 111
Query: 284 FIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV 343
IK +ACG H A+T +G + +WG +Q GQLGLG S L+P + F I I
Sbjct: 112 RIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQA-FEGIRI--- 165
Query: 344 PNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAA 403
+ VA G HT DG ++GWG+ YG T P V GE A
Sbjct: 166 ----KXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVA 221
Query: 404 GG 405
G
Sbjct: 222 CG 223
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 228 EKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPR--RVVALDGIFI 285
K+ +S G HS A+ V +WG G GQLGH GD E P ++ ALDG I
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQI 60
Query: 286 KDVACGGVHSCALTSKGA-LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVP 344
V CG H+ A + G +Y+WG G+LG G + F+ +P ++ R
Sbjct: 61 VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-------- 112
Query: 345 NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAA 403
++ +ACG SH L +G + WG N GQ + + P + G ++ +AA
Sbjct: 113 --IKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAA 170
Query: 404 GGGHSAVLADACSL 417
G H+A + + L
Sbjct: 171 GAEHTAAVTEDGDL 184
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 3 INEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANS 62
I++I G AR + + +Y WG+N GQ G Q + P+ +
Sbjct: 269 ISQISG-GARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--------DQ 319
Query: 63 RWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL 111
+ + ++CG HT AV +F WG GQLG G R P+ ++ L
Sbjct: 320 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 35/292 (11%)
Query: 17 IPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAA 76
+ ++ +Y WG G+ G R R P + G +D+A G H+A
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRSPCDR------PRVIESLRGIEV--VDVAAGGAHSAC 173
Query: 77 VASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPREND 136
V + G L+TWG +G+LG E + P+ V+ LQ V I+CG+ + +D
Sbjct: 174 VTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLC--LTDD 231
Query: 137 GTISTSRLWVWGQNQGSNFPRLFW-GAFTPNTI-------ICQVSCGSVHVVALSECGLL 188
T+ W WG R G P I + +V CGS VAL++ G +
Sbjct: 232 DTV-----WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAV 286
Query: 189 QAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGE 248
WG +Y +LG G + + ++ PR ++G + +K+ ++ G H +E+GE
Sbjct: 287 YTWGKGDYHRLGHG-SDDHVRRPRQVQGL--------QGKKVIAIATGSLHCVCCTEDGE 337
Query: 249 VYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTS 300
VYTWG GQLG + + + PR V AL G + VACG H+ A ++
Sbjct: 338 VYTWGDNDEGQLGDGTTNAIQR---PRLVAALQGKKVNRVACGSAHTLAWST 386
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 175/405 (43%), Gaps = 64/405 (15%)
Query: 23 IYVWGYNHSGQTGRKGRE-RQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDG 81
IY WG+NH GQ G G E ++++P C A A R + + G + AV +DG
Sbjct: 22 IYGWGHNHRGQLG--GIEGAKVKVPTP-------CEALATLRPVQLIGGEQTLFAVTADG 72
Query: 82 TLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSI---SCGAHCTAAIAEPRENDGT 138
L+ G G+LG G E P ++ +Q F+K + S G HC A +E
Sbjct: 73 KLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE------- 125
Query: 139 ISTSRLWVWGQNQGSNF----------PRLFWGAFTPNTIICQVSCGSVHVVALSECGLL 188
++ WG+ + PR+ + V+ G H ++ G L
Sbjct: 126 ---GEVYSWGEAEDGKLGHGNRSPCDRPRVI--ESLRGIEVVDVAAGGAHSACVTAAGDL 180
Query: 189 QAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCG--EYHSAAVSEN 246
WG YG+LG + + L+ P+++ EA + ++ ++CG + + ++++
Sbjct: 181 YTWGKGRYGRLGHSDSEDQLK-PKLV--------EALQGHRVVDIACGSGDAQTLCLTDD 231
Query: 247 GEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYA 306
V++WG G G+LG D +P ++ +L G+ + V CG S ALT GA+Y
Sbjct: 232 DTVWSWGDGDYGKLGR---GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYT 288
Query: 307 WGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQL--VACGHSHTLVYMRDG 364
WG +LG G SD + R + G ++ +A G H + DG
Sbjct: 289 WGKGDYHRLGHG------------SDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDG 336
Query: 365 RIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHS 408
++ WG N GQ + + P V G +V ++A G H+
Sbjct: 337 EVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHT 381
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 135/310 (43%), Gaps = 53/310 (17%)
Query: 67 IACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQS-EFVKSISCGAHC 125
+ G +H A++S+G +++WG E G+LG G P ++ L+ E V + GAH
Sbjct: 112 VNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 171
Query: 126 TAAIAEPRENDGTISTSRLWVWGQNQGSNF----------PRLFWGAFTPNTIICQVSCG 175
A L+ WG+ + P+L A + ++ ++CG
Sbjct: 172 ACVTA----------AGDLYTWGKGRYGRLGHSDSEDQLKPKLVE-ALQGHRVV-DIACG 219
Query: 176 S--VHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
S + L++ + +WG +YG+LGRG + +G + P I + +V
Sbjct: 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKIDSLTGL--------GVVKV 270
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293
CG S A++++G VYTWG G +LGH S D PR+V L G + +A G +
Sbjct: 271 ECGSQFSVALTKSGAVYTWGKGDYHRLGH---GSDDHVRRPRQVQGLQGKKVIAIATGSL 327
Query: 294 HSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVP---NGVQLV 350
H T G +Y WG + GQLG G T P LV V V
Sbjct: 328 HCVCCTEDGEVYTWGDNDEGQLGDGT-------------TNAIQRPRLVAALQGKKVNRV 374
Query: 351 ACGHSHTLVY 360
ACG +HTL +
Sbjct: 375 ACGSAHTLAW 384
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 62/218 (28%)
Query: 246 NGEVYTWGLGSVGQLGH--------------------CSLQSGDKELL------------ 273
+G +Y WG GQLG L G++ L
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATG 78
Query: 274 -----------------PRRVVALDGIFIKDVAC--GGVHSCALTSKGALYAWGGSQAGQ 314
P + ++ +FIK VA GG H AL+S+G +Y+WG ++ G+
Sbjct: 79 YGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK 138
Query: 315 LGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSY 374
LG G RS P ++ R I ++ VA G +H+ G ++ WG Y
Sbjct: 139 LGHG--NRSPCDRPRVIES-LRGIEVVD-------VAAGGAHSACVTAAGDLYTWGKGRY 188
Query: 375 GQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVL 411
G+ + S P V+ G V +A G G + L
Sbjct: 189 GRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 182/435 (41%), Gaps = 67/435 (15%)
Query: 13 PVDNIPAKSAIYVWGYNHSGQTGR-----KGRERQL----RIPKQLPPELFGCPAGANSR 63
P D IP + V +HS + G +G QL + ++ P L P
Sbjct: 5 PADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--- 61
Query: 64 WLDIACGHEHTAAVASDGTLFTWGANEFGQLG-DGTEEGRKHPEKVKQLQSEFVKSISCG 122
+ G HT ++ G ++++G N+ G LG D + EG + +LQ + V+ +S G
Sbjct: 62 -VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQ-VSAG 119
Query: 123 AHCTAAIAEPRENDGTISTSRLWVWGQNQGSN----FPRLFWGAFTPNTI-----ICQVS 173
TAA+ +DG R+++WG + +N + P + + +V+
Sbjct: 120 DSHTAALT----DDG-----RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVA 170
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEK---- 229
G+ H+V L+ G L G E GQLGR +G R +G + L + K
Sbjct: 171 SGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR--QGLERLLVPKCVMLKSRGS 228
Query: 230 -----ITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIF 284
CG Y + A+S G VY +GL + QLG +S +P+ + +
Sbjct: 229 RGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC---FIPQNLTSFKNST 285
Query: 285 IKDVACGG--VHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILV 342
V G H+ + S+G Y+ G ++ G+LGLG S IP T +P
Sbjct: 286 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS-IP----TLISRLP--- 337
Query: 343 VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE----- 397
V VACG S +DGR+ WG + Q + AW SPV+ +
Sbjct: 338 ---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW--SPVEMMGKQLENRV 392
Query: 398 VRKLAAGGGHSAVLA 412
V +++GG H+ +L
Sbjct: 393 VLSVSSGGQHTVLLV 407
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 120/263 (45%), Gaps = 37/263 (14%)
Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
+ Q G +H V LS+ G + ++G N+ G LGR + EG + ++ G + E
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSE---MVPGKVELQ------E 111
Query: 229 KITQVSCGEYHSAAVSENGEVYTWG--LGSVGQLGHCSLQSGDKELLPRRVVALDGIFIK 286
K+ QVS G+ H+AA++++G V+ WG + G +G L+ K ++P + V LD +K
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG--LLEPMKKSMVPVQ-VQLDVPVVK 168
Query: 287 DVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNG 346
VA G H LT+ G LY G + GQLG P+ L N + + L+VP
Sbjct: 169 -VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE-----LFANRGGR--QGLERLLVPKC 220
Query: 347 VQLVA-------------CGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDW 393
V L + CG T +G ++G+G ++Y Q + + P +
Sbjct: 221 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Query: 394 CVGEVRKLA--AGGGHSAVLADA 414
+ +GG H V D+
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDS 303
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 47 KQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPE 106
K +P + PA ++ +ACG AV DG +F WG QLG G +E P
Sbjct: 327 KSIPTLISRLPAVSS-----VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV 381
Query: 107 KV--KQLQSEFVKSISCGAHCTAAIAEPREN 135
++ KQL++ V S+S G T + + +E
Sbjct: 382 EMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 160/370 (43%), Gaps = 54/370 (14%)
Query: 69 CGHEHTAAVASDGTLFTWGANEFGQLG-DGTEEGRKHPEKVKQLQSEFVKSISCGAHCTA 127
G HT ++ G ++++G N+ G LG D + EG + +LQ + V+ +S G TA
Sbjct: 55 AGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQ-VSAGDSHTA 113
Query: 128 AIAEPRENDGTISTSRLWVWGQNQGSN----FPRLFWGAFTPNTI-----ICQVSCGSVH 178
A+ +DG R+++WG + +N + P + + +V+ G+ H
Sbjct: 114 ALT----DDG-----RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDH 164
Query: 179 VVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEK--------- 229
+V L+ G L G E GQLGR +G R +G + L + K
Sbjct: 165 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR--QGLERLLVPKCVMLKSRGSRGHVR 222
Query: 230 ITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVA 289
CG Y + A+S G VY +GL + QLG +S +P+ + + V
Sbjct: 223 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC---FIPQNLTSFKNSTKSWVG 279
Query: 290 CGG--VHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGV 347
G H+ + S+G Y+ G ++ G+LGLG S IP T +P V
Sbjct: 280 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS-IP----TLISRLP------AV 328
Query: 348 QLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-----VRKLA 402
VACG S +DGR+ WG + Q + AW SPV+ + V ++
Sbjct: 329 SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW--SPVEMMGKQLENRVVLSVS 386
Query: 403 AGGGHSAVLA 412
+GG H+ +L
Sbjct: 387 SGGQHTVLLV 396
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 37/263 (14%)
Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
+ Q G +H V LS+ G + ++G N+ G LGR + EG ++ G + E
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG---SEMVPGKVELQ------E 100
Query: 229 KITQVSCGEYHSAAVSENGEVYTWG--LGSVGQLGHCSLQSGDKELLPRRVVALDGIFIK 286
K+ QVS G+ H+AA++++G V+ WG + G +G L+ K ++P + V LD +K
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG--LLEPMKKSMVPVQ-VQLDVPVVK 157
Query: 287 DVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNG 346
VA G H LT+ G LY G + GQLG P+ L N + + L+VP
Sbjct: 158 -VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE-----LFANRGGR--QGLERLLVPKC 209
Query: 347 VQLVA-------------CGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDW 393
V L + CG T +G ++G+G ++Y Q + + P +
Sbjct: 210 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 269
Query: 394 CVGEVRKLA--AGGGHSAVLADA 414
+ +GG H V D+
Sbjct: 270 FKNSTKSWVGFSGGQHHTVCMDS 292
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 47/300 (15%)
Query: 23 IYVWG--YNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASD 80
+++WG +++G G ++ +P Q+ ++ P + +A G++H + +D
Sbjct: 121 VFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV---PV------VKVASGNDHLVMLTAD 171
Query: 81 GTLFTWGANEFGQLGDGTE-----EGRKHPEKVKQLQSEFVKS-----------ISCGAH 124
G L+T G E GQLG E GR+ E++ + +KS CGA+
Sbjct: 172 GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 231
Query: 125 CTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTII-CQVSCGSVHVVALS 183
T AI+ G ++ + S F +F +T S G H V +
Sbjct: 232 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMD 291
Query: 184 ECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAV 243
G + G EYG+LG G E P +I L ++ V+CG AV
Sbjct: 292 SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS----------RLPAVSSVACGASVGYAV 341
Query: 244 SENGEVYTWGLGSVGQLGHCSLQSGDK----ELLPRRVVALDGIFIKDVACGGVHSCALT 299
+++G V+ WG+G+ QLG + Q D E++ ++ L+ + V+ GG H+ L
Sbjct: 342 TKDGRVFAWGMGTNYQLG--TGQDEDAWSPVEMMGKQ---LENRVVLSVSSGGQHTVLLV 396
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 47 KQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPE 106
K +P + PA ++ +ACG AV DG +F WG QLG G +E P
Sbjct: 316 KSIPTLISRLPAVSS-----VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV 370
Query: 107 KV--KQLQSEFVKSISCGAHCTAAIAEPREN 135
++ KQL++ V S+S G T + + +E
Sbjct: 371 EMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 401
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 115/295 (38%), Gaps = 45/295 (15%)
Query: 149 QNQGSNFPRLFWGAFTPN--TIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITC- 205
+N+ PRL F P I + G +H +AL E + +WG N+ G LGR +
Sbjct: 49 KNKEVKRPRL--NPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNA 106
Query: 206 -EGLQGPRVIKGYAKFLDEAPELE------------------KITQVSCGEYHSAAVSEN 246
E L+ + ELE K+ Q++ + S A+ N
Sbjct: 107 KEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSN 166
Query: 247 GEVYTWGLGSVGQLGHCSLQSGDK-ELLPRRVVALDGIFIKDVACGGVHSCALTSKGALY 305
GEVY WG + Q K + P +V I +A G H L +G ++
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226
Query: 306 AWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNG---VQLVACGHSHTLVYMR 362
AWG Q QLG R FR + P G V+ +A G +H +
Sbjct: 227 AWGNGQQNQLGRKVMER------------FRLKTLDPRPFGLRHVKYIASGENHCFALTK 274
Query: 363 DGRIHGWGYNSYGQ--AANEKSTYAWYPSPVDWCVGE---VRKLAAGGGHSAVLA 412
D ++ WG N +GQ + + A P + + +R +AAG HS +L+
Sbjct: 275 DNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 139/369 (37%), Gaps = 60/369 (16%)
Query: 62 SRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISC 121
++ + A G HT A+ + +++WG N+ G LG T ++ + + S +
Sbjct: 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 122 GAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVA 181
+ PRE+ FP L G + Q++ A
Sbjct: 127 NELESTPAKIPRES-------------------FPPLAEGH-----KVVQLAATDNMSCA 162
Query: 182 LSECGLLQAWGYNEYGQLGRGITCEGLQ---GPRVIKGYAKFLDEAPELEKITQVSCGEY 238
L G + AWG + G + ++ P + ++K+ I Q++ G+
Sbjct: 163 LFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKY--------NIVQLAPGKD 214
Query: 239 HSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCAL 298
H + E G V+ WG G QLG ++ + L R L +K +A G H AL
Sbjct: 215 HILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR--HVKYIASGENHCFAL 272
Query: 299 TSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQL--VACGHSH 356
T L +WG +Q GQ G+ +L+ L +P+ V + +A G H
Sbjct: 273 TKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKR--------LALPDNVVIRSIAAGEHH 324
Query: 357 TLVYMRDGRIHGWGYNSYGQAANEKSTYAWY------------PSPVDW-CVGEVRKLAA 403
+L+ +DG ++ G + K Y P P V + + +AA
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAA 384
Query: 404 GGGHSAVLA 412
G HS +A
Sbjct: 385 GSHHSVAVA 393
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 149/385 (38%), Gaps = 73/385 (18%)
Query: 20 KSAIYVWGYNHSGQTGRK--GRERQLR--------------------IPKQLPPELFGCP 57
+S ++ WG N G GR + QL+ P ++P E F P
Sbjct: 85 ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFP-P 143
Query: 58 AGANSRWLDIACGHEHTAAVASDGTLFTWGA---NEFGQLGDGTEEGR--KHPEKVKQLQ 112
+ + +A + A+ S+G ++ WG NE G LG ++ + K P KV
Sbjct: 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNE-GILGFYQDKIKIQKTPWKVPTFS 202
Query: 113 SEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTI---- 168
+ ++ G + E ++ WG Q + R F T+
Sbjct: 203 KYNIVQLAPGKDHILFLDE---------EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP 253
Query: 169 -----ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE 223
+ ++ G H AL++ L +WG N++GQ G E G V K L
Sbjct: 254 FGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVE--DGALVTKPKRLAL-- 309
Query: 224 APELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPR-------- 275
P+ I ++ GE+HS +S++G++Y+ G + ++G K+ LP
Sbjct: 310 -PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI------PKDNLPEYTYKDVHG 362
Query: 276 --RVVALDGIF-----IKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIP 328
R V L K VA G HS A+ G Y+WG + +GLGP +
Sbjct: 363 KARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPT 422
Query: 329 NESDTYFRNIPILVVPNGVQLVACG 353
+T ++ I++V G Q G
Sbjct: 423 RIKNTATQDHNIILVGCGGQFSVSG 447
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 248 EVYTWGLGSVGQLGHCSLQSGDKELLPRR--VVALDGIFIKDVACGGVHSCALTSKGALY 305
+++ WG GS+ +LG L + PR + D I A GG+H+ AL + ++
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 306 AWGGSQAGQLG 316
+WG + G LG
Sbjct: 90 SWGCNDVGALG 100
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 67 IACGHEHTAAVASDGTLFTWGANEFGQLGDGTE-----EGRK------HPEKVKQLQSEF 115
IA G +H + + G +FT G E GQLG +E EGR+ P ++ +++
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 116 VKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG---AFTPNTI---- 168
++I +CT RE+ T +W G N G A TP
Sbjct: 244 FEAIWATNYCTFM----RES----QTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD 295
Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
I ++ G H V L+ G EYG+LG G + ++ P ++K E
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT---------E 346
Query: 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVA 279
KI V CGE S AV+ +G++Y+WG G QLG + GD EL P VV+
Sbjct: 347 KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG---VGDGDDELEPIVVVS 394
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 162/397 (40%), Gaps = 48/397 (12%)
Query: 31 SGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANE 90
+G G+ G + K+L P + G P +DI+ G H + G ++++G N+
Sbjct: 50 NGDVGQLGLGEDILERKRLSP-VAGIPDA-----VDISAGGMHNLVLTKSGDIYSFGCND 103
Query: 91 FGQLG-DGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWG- 148
G LG D +E+G + + L + + IS G +A + E DG R++ WG
Sbjct: 104 EGALGRDTSEDGSESKPDLIDLPGKAL-CISAGDSHSACLLE----DG-----RVFAWGS 153
Query: 149 --QNQGSNFPRLFWGAFTP-----NTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLG- 200
+ G+ + TP T+ C ++ G+ H+V L+ G + G E GQLG
Sbjct: 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR 213
Query: 201 ---RGITCEGLQGPR-VIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGS 256
R I+ EG +G R +++ + A E I + + S+ ++ GL +
Sbjct: 214 LSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE--SQTQVIWATGLNN 271
Query: 257 VGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLG 316
QL H + + L P + D I+ +A G H+ LT+ G + G+LG
Sbjct: 272 FKQLAH-ETKGKEFALTPIKTELKD---IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLG 327
Query: 317 LGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQ 376
LG + D + + + + V CG + DG+++ WG Q
Sbjct: 328 LG----------DVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQ 377
Query: 377 AANEKSTYAWYPSPV--DWCVGEVRKLAAGGGHSAVL 411
P V G+ LA+GGG A+
Sbjct: 378 LGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIF 414
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 24/262 (9%)
Query: 157 RLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQG-PRVIK 215
RL A P+ + +S G +H + L++ G + ++G N+ G LGR + +G + P +I
Sbjct: 67 RLSPVAGIPDAV--DISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID 124
Query: 216 GYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWG--LGSVGQLGHCSLQSGDKELL 273
K L +S G+ HSA + E+G V+ WG S G +G L +
Sbjct: 125 LPGKAL----------CISAGDSHSACLLEDGRVFAWGSFRDSHGNMG---LTIDGNKRT 171
Query: 274 PRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDT 333
P + ++G +A G H LT+ G ++ G ++ GQLG + RS S
Sbjct: 172 P--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE-RSISGEGRRGKR 228
Query: 334 YFRNIPILVVPNGVQLVACGHSHTLVYMRDGR---IHGWGYNSYGQAANEKSTYAWYPSP 390
L++ A ++ +MR+ + I G N++ Q A+E + +P
Sbjct: 229 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTP 288
Query: 391 VDWCVGEVRKLAAGGGHSAVLA 412
+ + ++R +A G H+ +L
Sbjct: 289 IKTELKDIRHIAGGQHHTVILT 310
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 64/209 (30%)
Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
+ ++ G+ H +AL + G + AWG NE GQ + E G
Sbjct: 65 VDAIAAGNYHSLALKD-GEVIAWGGNEDGQ--TTVPAEARSG------------------ 103
Query: 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQLG-HCSLQSGDKELLPRRVVALDGIFIKD 287
+ ++ G + S A+ ++G+V WG S GQ QSG V ALDG
Sbjct: 104 -VDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSG--------VTALDG----- 148
Query: 288 VACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGV 347
GV++ G + AWG + GQ + +P E+ + GV
Sbjct: 149 ----GVYTALAVKNGGVIAWGDNYFGQ----------TTVPAEAQS------------GV 182
Query: 348 QLVACGHSHTLVYMRDGRIHGWGYNSYGQ 376
VA G H+L ++DG++ WG N Y Q
Sbjct: 183 DDVAGGIFHSLA-LKDGKVIAWGDNRYKQ 210
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 42/148 (28%)
Query: 230 ITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGH-CSLQSGDKELLPRRVVALDGIFIKDV 288
+ ++ G +H A+ + G+V WG GQL + QSG + +
Sbjct: 26 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMPAATQSG----------------VDAI 68
Query: 289 ACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQ 348
A G HS AL G + AWGG++ GQ + + RS GV
Sbjct: 69 AAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARS----------------------GVD 105
Query: 349 LVACGHSHTLVYMRDGRIHGWGYNSYGQ 376
+A G + ++DG++ WG +S GQ
Sbjct: 106 AIAAGAWASYA-LKDGKVIAWGDDSDGQ 132
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 56 CPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEF 115
PA S IA G+ H+ A+ DG + WG NE GQ E + +
Sbjct: 57 MPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASY 115
Query: 116 V----KSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGA--FTPNTI- 168
K I+ G P E ++ V+ N + WG F T+
Sbjct: 116 ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVP 175
Query: 169 ------ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLD 222
+ V+ G H +AL + G + AWG N Y Q + E L G
Sbjct: 176 AEAQSGVDDVAGGIFHSLALKD-GKVIAWGDNRYKQ--TTVPTEALSG------------ 220
Query: 223 EAPELEKITQVSCGEYHSAAVSENGEVYTWG 253
++ ++ GE++S A+ +NG+V WG
Sbjct: 221 -------VSAIASGEWYSLAL-KNGKVIAWG 243
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 117/318 (36%), Gaps = 95/318 (29%)
Query: 56 CPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEF 115
PA A S IA G+ H A+ G + WGAN GQL +
Sbjct: 18 VPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL------------TMPAATQSG 64
Query: 116 VKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQG--SNFPRLFWGAFTPNTIICQVS 173
V +I+ G + + A+ DG + WG N+ + P + + ++
Sbjct: 65 VDAIAAGNYHSLAL-----KDGEVI-----AWGGNEDGQTTVPA------EARSGVDAIA 108
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
G+ AL + G + AWG + GQ + E G +T +
Sbjct: 109 AGAWASYALKD-GKVIAWGDDSDGQ--TTVPAEAQSG-------------------VTAL 146
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLG-HCSLQSGDKELLPRRVVALDGIFIKDVACGG 292
G Y + AV +NG V WG GQ QSG + DVA G
Sbjct: 147 DGGVYTALAV-KNGGVIAWGDNYFGQTTVPAEAQSG----------------VDDVAGGI 189
Query: 293 VHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVAC 352
HS AL G + AWG ++ Q + +P E+ +GV +A
Sbjct: 190 FHSLAL-KDGKVIAWGDNRYKQ----------TTVPTEA------------LSGVSAIAS 226
Query: 353 GHSHTLVYMRDGRIHGWG 370
G ++L +++G++ WG
Sbjct: 227 GEWYSLA-LKNGKVIAWG 243
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 345 NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAG 404
+GV +A G+ H L ++ G++ GWG N GQ +T + V +AAG
Sbjct: 24 SGVDAIAGGYFHGLA-LKGGKVLGWGANLNGQLTMPAATQS-----------GVDAIAAG 71
Query: 405 GGHSAVLAD 413
HS L D
Sbjct: 72 NYHSLALKD 80
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 64/209 (30%)
Query: 169 ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELE 228
+ ++ G+ H +AL + G + AWG NE GQ + E G
Sbjct: 67 VDAIAAGNYHSLALKD-GEVIAWGGNEDGQ--TTVPAEARSG------------------ 105
Query: 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQLG-HCSLQSGDKELLPRRVVALDGIFIKD 287
+ ++ G + S A+ ++G+V WG S GQ QSG V ALDG
Sbjct: 106 -VDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSG--------VTALDG----- 150
Query: 288 VACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGV 347
GV++ G + AWG + GQ + +P E+ + GV
Sbjct: 151 ----GVYTALAVKNGGVIAWGDNYFGQ----------TTVPAEAQS------------GV 184
Query: 348 QLVACGHSHTLVYMRDGRIHGWGYNSYGQ 376
VA G H+L ++DG++ WG N Y Q
Sbjct: 185 DDVAGGIFHSLA-LKDGKVIAWGDNRYKQ 212
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 42/148 (28%)
Query: 230 ITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGH-CSLQSGDKELLPRRVVALDGIFIKDV 288
+ ++ G +H A+ + G+V WG GQL + QSG + +
Sbjct: 28 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTMPAATQSG----------------VDAI 70
Query: 289 ACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQ 348
A G HS AL G + AWGG++ GQ + + RS GV
Sbjct: 71 AAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARS----------------------GVD 107
Query: 349 LVACGHSHTLVYMRDGRIHGWGYNSYGQ 376
+A G + ++DG++ WG +S GQ
Sbjct: 108 AIAAGAWASYA-LKDGKVIAWGDDSDGQ 134
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 90/242 (37%), Gaps = 42/242 (17%)
Query: 56 CPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEF 115
PA S IA G+ H+ A+ DG + WG NE GQ E + +
Sbjct: 59 MPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASY 117
Query: 116 V----KSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGA--FTPNTI- 168
K I+ G P E ++ V+ N + WG F T+
Sbjct: 118 ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVP 177
Query: 169 ------ICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLD 222
+ V+ G H +AL + G + AWG N Y Q + E L G
Sbjct: 178 AEAQSGVDDVAGGIFHSLALKD-GKVIAWGDNRYKQ--TTVPTEALSG------------ 222
Query: 223 EAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSG--DKELLPRRVVAL 280
++ ++ GE++S A+ +NG+V WG + S+QSG E P AL
Sbjct: 223 -------VSAIASGEWYSLAL-KNGKVIAWG---SSRTAPSSVQSGVSSIEAGPNAAYAL 271
Query: 281 DG 282
G
Sbjct: 272 KG 273
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 117/318 (36%), Gaps = 95/318 (29%)
Query: 56 CPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEF 115
PA A S IA G+ H A+ G + WGAN GQL +
Sbjct: 20 VPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGANLNGQL------------TMPAATQSG 66
Query: 116 VKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQG--SNFPRLFWGAFTPNTIICQVS 173
V +I+ G + + A+ DG + WG N+ + P + + ++
Sbjct: 67 VDAIAAGNYHSLAL-----KDGEVI-----AWGGNEDGQTTVPA------EARSGVDAIA 110
Query: 174 CGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQV 233
G+ AL + G + AWG + GQ + E G +T +
Sbjct: 111 AGAWASYALKD-GKVIAWGDDSDGQ--TTVPAEAQSG-------------------VTAL 148
Query: 234 SCGEYHSAAVSENGEVYTWGLGSVGQLG-HCSLQSGDKELLPRRVVALDGIFIKDVACGG 292
G Y + AV +NG V WG GQ QSG + DVA G
Sbjct: 149 DGGVYTALAV-KNGGVIAWGDNYFGQTTVPAEAQSG----------------VDDVAGGI 191
Query: 293 VHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVAC 352
HS AL G + AWG ++ Q + +P E+ +GV +A
Sbjct: 192 FHSLAL-KDGKVIAWGDNRYKQ----------TTVPTEA------------LSGVSAIAS 228
Query: 353 GHSHTLVYMRDGRIHGWG 370
G ++L +++G++ WG
Sbjct: 229 GEWYSLA-LKNGKVIAWG 245
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 345 NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAG 404
+GV +A G+ H L ++ G++ GWG N GQ +T + V +AAG
Sbjct: 26 SGVDAIAGGYFHGLA-LKGGKVLGWGANLNGQLTMPAATQS-----------GVDAIAAG 73
Query: 405 GGHSAVLAD 413
HS L D
Sbjct: 74 NYHSLALKD 82
>pdb|2XBO|1 Chain 1, Equine Rhinitis A Virus In Complex With Its Sialic Acid
Receptor
Length = 248
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 351 ACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYP 388
ACG S + Y R+ YN +G EK+TY W P
Sbjct: 153 ACGFS--VPYTSMWRVVPVFYNGWGAPTKEKATYNWLP 188
>pdb|2WFF|1 Chain 1, Equine Rhinitis A Virus
pdb|2WS9|1 Chain 1, Equine Rhinitis A Virus At Low Ph
Length = 246
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 351 ACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYP 388
ACG S + Y R+ YN +G EK+TY W P
Sbjct: 153 ACGFS--VPYTSMWRVVPVFYNGWGAPTKEKATYNWLP 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,635,063
Number of Sequences: 62578
Number of extensions: 669037
Number of successful extensions: 1646
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 85
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)