Query 011798
Match_columns 477
No_of_seqs 396 out of 2448
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 9.6E-52 2.1E-56 390.2 30.2 368 15-414 62-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.7E-43 3.7E-48 334.4 26.1 344 71-443 58-436 (476)
3 KOG1427 Uncharacterized conser 100.0 9.5E-41 2.1E-45 295.7 17.2 331 1-415 56-400 (443)
4 KOG1427 Uncharacterized conser 100.0 1.9E-37 4.2E-42 274.7 18.3 313 19-414 18-346 (443)
5 KOG0783 Uncharacterized conser 99.9 1.6E-26 3.5E-31 229.3 15.2 317 15-417 136-452 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 1.1E-23 2.4E-28 216.7 20.9 334 58-427 475-850 (3738)
7 KOG1428 Inhibitor of type V ad 99.9 1.2E-21 2.6E-26 202.0 23.7 280 4-321 480-857 (3738)
8 KOG0783 Uncharacterized conser 99.9 8.9E-23 1.9E-27 202.9 11.3 218 180-417 136-356 (1267)
9 PF00415 RCC1: Regulator of ch 99.2 1.2E-11 2.6E-16 84.8 4.4 49 363-411 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.1E-11 2.3E-16 85.1 3.8 50 80-129 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 2.7E-11 5.9E-16 72.1 4.3 30 64-93 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 5E-11 1.1E-15 70.9 4.6 30 285-314 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 3.4E-12 7.3E-17 129.6 -6.4 143 61-258 13-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 2.4E-11 5.2E-16 123.5 -6.8 142 228-429 14-156 (850)
15 PF11725 AvrE: Pathogenicity f 94.2 3.5 7.5E-05 47.3 18.2 115 278-415 698-815 (1774)
16 KOG3669 Uncharacterized conser 93.7 5.5 0.00012 40.6 16.9 74 163-251 223-298 (705)
17 KOG0943 Predicted ubiquitin-pr 91.4 0.037 7.9E-07 59.7 -1.3 129 227-372 373-505 (3015)
18 KOG3669 Uncharacterized conser 85.6 47 0.001 34.2 18.3 71 62-147 227-299 (705)
19 PF07569 Hira: TUP1-like enhan 81.2 8.1 0.00017 35.1 8.0 28 166-193 12-39 (219)
20 PF11725 AvrE: Pathogenicity f 80.3 24 0.00052 41.0 12.4 107 166-302 702-815 (1774)
21 KOG1900 Nuclear pore complex, 78.0 1.3E+02 0.0029 34.3 17.9 63 16-88 94-156 (1311)
22 KOG0943 Predicted ubiquitin-pr 76.3 0.85 1.8E-05 49.9 0.1 133 57-198 369-509 (3015)
23 PHA02713 hypothetical protein; 75.4 1.1E+02 0.0023 32.4 15.3 53 141-193 351-406 (557)
24 COG4257 Vgb Streptogramin lyas 74.4 62 0.0013 30.3 11.3 138 8-191 60-205 (353)
25 PF04762 IKI3: IKI3 family; I 73.2 1.7E+02 0.0036 33.1 17.6 31 162-192 422-454 (928)
26 KOG4441 Proteins containing BT 72.1 76 0.0016 33.5 13.2 22 288-309 509-530 (571)
27 PHA03098 kelch-like protein; P 72.0 1.3E+02 0.0028 31.3 16.2 52 141-193 342-397 (534)
28 KOG4441 Proteins containing BT 71.3 71 0.0015 33.8 12.8 100 141-254 427-530 (571)
29 PHA03098 kelch-like protein; P 68.7 56 0.0012 34.1 11.6 16 73-89 336-351 (534)
30 KOG0315 G-protein beta subunit 66.9 1.1E+02 0.0023 28.3 18.4 89 141-254 104-196 (311)
31 smart00706 TECPR Beta propelle 66.7 9.9 0.00022 22.9 3.3 25 62-86 8-33 (35)
32 PF07569 Hira: TUP1-like enhan 66.4 9.7 0.00021 34.6 4.6 36 337-372 5-40 (219)
33 PHA02713 hypothetical protein; 64.7 51 0.0011 34.7 10.2 20 70-89 341-360 (557)
34 TIGR03548 mutarot_permut cycli 58.9 1.7E+02 0.0037 28.1 12.2 53 141-193 123-179 (323)
35 KOG0291 WD40-repeat-containing 57.7 2.7E+02 0.0059 30.0 23.7 122 63-196 299-424 (893)
36 KOG0293 WD40 repeat-containing 48.1 2.9E+02 0.0064 27.5 12.0 52 141-193 416-469 (519)
37 PF06739 SBBP: Beta-propeller 47.3 21 0.00045 22.2 2.4 17 73-89 16-32 (38)
38 KOG2106 Uncharacterized conser 45.8 3.5E+02 0.0076 27.7 12.0 64 350-414 285-348 (626)
39 PF12341 DUF3639: Protein of u 45.0 59 0.0013 18.6 3.7 24 228-251 2-25 (27)
40 KOG0315 G-protein beta subunit 44.4 2.6E+02 0.0057 25.9 21.2 67 230-310 127-197 (311)
41 KOG0646 WD40 repeat protein [G 43.5 3.6E+02 0.0078 27.2 17.8 70 61-149 81-152 (476)
42 KOG0649 WD40 repeat protein [G 43.1 2.2E+02 0.0048 26.2 8.9 30 229-259 64-93 (325)
43 KOG1408 WD40 repeat protein [F 42.6 34 0.00074 36.1 4.3 101 172-307 138-246 (1080)
44 KOG0275 Conserved WD40 repeat- 36.0 4E+02 0.0087 25.5 9.9 24 6-29 355-378 (508)
45 KOG1408 WD40 repeat protein [F 35.7 2.3E+02 0.005 30.4 8.9 73 16-88 172-248 (1080)
46 PF04841 Vps16_N: Vps16, N-ter 35.7 4.7E+02 0.01 26.3 17.6 26 166-191 216-243 (410)
47 PF04762 IKI3: IKI3 family; I 35.0 7.2E+02 0.016 28.2 24.4 29 60-88 425-455 (928)
48 KOG1900 Nuclear pore complex, 34.9 6.2E+02 0.013 29.4 12.5 153 141-316 98-278 (1311)
49 PF01436 NHL: NHL repeat; Int 32.6 79 0.0017 17.9 3.1 18 73-90 5-22 (28)
50 PLN02153 epithiospecifier prot 31.8 4.8E+02 0.01 25.2 12.1 15 179-193 308-322 (341)
51 PF13418 Kelch_4: Galactose ox 31.7 47 0.001 21.5 2.4 17 72-88 4-20 (49)
52 PLN02153 epithiospecifier prot 30.8 5E+02 0.011 25.1 18.0 17 72-89 25-41 (341)
53 KOG1274 WD40 repeat protein [G 30.5 7.9E+02 0.017 27.3 15.2 150 70-252 14-165 (933)
54 KOG2444 WD40 repeat protein [G 30.1 2.6E+02 0.0057 25.5 7.3 66 69-151 68-133 (238)
55 TIGR03300 assembly_YfgL outer 29.6 5.2E+02 0.011 25.2 10.5 17 293-309 321-337 (377)
56 KOG0291 WD40-repeat-containing 28.8 7.9E+02 0.017 26.8 21.4 139 16-193 314-454 (893)
57 PHA02790 Kelch-like protein; P 27.5 4E+02 0.0087 27.4 9.5 140 124-308 311-453 (480)
58 KOG0649 WD40 repeat protein [G 27.3 5E+02 0.011 24.0 18.8 89 16-109 17-110 (325)
59 KOG2055 WD40 repeat protein [G 26.8 6.8E+02 0.015 25.4 13.0 77 177-282 357-433 (514)
60 PLN03215 ascorbic acid mannose 25.5 2.3E+02 0.0051 28.0 6.9 62 168-253 161-225 (373)
61 KOG1034 Transcriptional repres 25.3 1.7E+02 0.0037 28.1 5.5 56 243-309 325-382 (385)
62 PF03785 Peptidase_C25_C: Pept 25.3 1.1E+02 0.0024 22.7 3.4 34 166-199 15-49 (81)
63 KOG0293 WD40 repeat-containing 25.2 7E+02 0.015 25.0 10.0 72 165-254 394-469 (519)
64 COG4257 Vgb Streptogramin lyas 25.2 5.9E+02 0.013 24.1 9.7 107 175-315 62-173 (353)
65 PF10168 Nup88: Nuclear pore c 24.5 9.5E+02 0.021 26.3 16.7 230 173-403 29-292 (717)
66 KOG2055 WD40 repeat protein [G 24.4 7.5E+02 0.016 25.1 9.9 44 141-195 365-408 (514)
67 PF03785 Peptidase_C25_C: Pept 24.3 1.1E+02 0.0023 22.8 3.2 35 60-94 14-49 (81)
68 KOG0289 mRNA splicing factor [ 24.0 5.8E+02 0.013 25.7 9.0 76 72-158 350-427 (506)
69 PF07312 DUF1459: Protein of u 23.6 51 0.0011 24.1 1.4 13 364-376 56-69 (84)
70 PF04841 Vps16_N: Vps16, N-ter 21.0 8.5E+02 0.018 24.4 18.5 72 62-150 81-155 (410)
71 PRK02529 petN cytochrome b6-f 20.6 91 0.002 18.5 1.8 19 16-34 13-31 (33)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9.6e-52 Score=390.22 Aligned_cols=368 Identities=27% Similarity=0.476 Sum_probs=289.2
Q ss_pred cccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcC
Q 011798 15 DNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQL 94 (477)
Q Consensus 15 ~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqL 94 (477)
.....-..||+||+|..+|||+++++.....|+..++... ....|++++||..|+++|++||+||+||.|..|+|
T Consensus 62 ~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~-----d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 62 HLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRI-----DKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred hhhhheeeeEEEecCcceeeccCCchhcccCceecCcccc-----cceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 3677788999999999999999999988889998886543 45889999999999999999999999999999999
Q ss_pred CCCCC----------------cCccccccccc----ccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCC
Q 011798 95 GDGTE----------------EGRKHPEKVKQ----LQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSN 154 (477)
Q Consensus 95 G~~~~----------------~~~~~p~~v~~----~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~ 154 (477)
|.... ....+|..|+. ....+|++++||+.+++++++ +|+||.||...-..
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~---------~G~V~~~gt~r~~e 207 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTA---------DGRVYSWGTFRCGE 207 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEcc---------CCcEEEecCccccc
Confidence 98771 12467777765 234489999999999999999 99999999865332
Q ss_pred CCce-----------eecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccccccc
Q 011798 155 FPRL-----------FWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE 223 (477)
Q Consensus 155 ~~~~-----------~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~ 223 (477)
...- ......+...|+++++|.+|.++|+++|+||+||+|.+||||..........+ .+..
T Consensus 208 ~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~-lv~~------- 279 (476)
T COG5184 208 LGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV-LVGD------- 279 (476)
T ss_pred cccccccccccceeeeeeeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhccccc-ccCC-------
Confidence 2110 11111225689999999999999999999999999999999987654322222 2211
Q ss_pred CccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCC-CCCCccccceeeeecCCceEEEEEccCceEEEEecCC
Q 011798 224 APELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSL-QSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKG 302 (477)
Q Consensus 224 ~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~-~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G 302 (477)
......|+.|+||.+|+++|+++|+||+||.|.+||||.++. ........|.....+.+..|.+|++|..|+++|..+|
T Consensus 280 ~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G 359 (476)
T COG5184 280 PFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDG 359 (476)
T ss_pred hhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCc
Confidence 112345889999999999999999999999999999998732 1122345677777777888999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCC
Q 011798 303 ALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKS 382 (477)
Q Consensus 303 ~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~ 382 (477)
.||+||++..+|||.....+.. .+..++.....++..++||..|+++.+.+|+||.||++++|+||.++.
T Consensus 360 ~l~a~Gr~~~~qlg~~~~~~~~----------~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 360 TLYAFGRGDRGQLGIQEEITID----------VSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred eEEEecCCccccccCcccceee----------cCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 9999999999999987744321 122222223357899999999999999999999999999999998765
Q ss_pred cc-ccCCeeccc--c-cCceEEEEecCCceEEEecC
Q 011798 383 TY-AWYPSPVDW--C-VGEVRKLAAGGGHSAVLADA 414 (477)
Q Consensus 383 ~~-~~~p~~v~~--~-~~~i~~v~~G~~~t~~l~~~ 414 (477)
.. ...|+.++. . ...++..-+|.+..++....
T Consensus 430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence 54 445666652 1 23677778887777776554
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.7e-43 Score=334.38 Aligned_cols=344 Identities=25% Similarity=0.404 Sum_probs=262.4
Q ss_pred cceeEEEecCCcEEEEeCCCCCcCCCCCCcCc-ccccccccc--cccceEEEeeCCceeEEEeccCCCCCccccCcEEEe
Q 011798 71 HEHTAAVASDGTLFTWGANEFGQLGDGTEEGR-KHPEKVKQL--QSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVW 147 (477)
Q Consensus 71 ~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~w 147 (477)
..|...++.-..||+||+|..+|||++..... ..|+..+.. ....|.+++||..|+++|.+ ||.||.|
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~---------Dg~lysw 128 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH---------DGNLYSW 128 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecC---------CCCEEEe
Confidence 35566788889999999999999999997754 888888776 66789999999999999999 9999999
Q ss_pred cCCCCCCCCcee---------------e-------cCCC------CCCcEEEEecCCceeEEEecCCcEEEeecCCCCCC
Q 011798 148 GQNQGSNFPRLF---------------W-------GAFT------PNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQL 199 (477)
Q Consensus 148 G~~~~~~~~~~~---------------~-------~~~~------~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gql 199 (477)
|.|..+.+.+.. . ..++ ...+|++++||.+++++|+++|+||+||....+.+
T Consensus 129 G~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~ 208 (476)
T COG5184 129 GDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGEL 208 (476)
T ss_pred ccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccc
Confidence 999877665443 1 0111 13379999999999999999999999999988888
Q ss_pred cCCCCCCCCCCCe-eeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCcc-ccceee
Q 011798 200 GRGITCEGLQGPR-VIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKE-LLPRRV 277 (477)
Q Consensus 200 G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~-~~p~~i 277 (477)
+.+.........- .++.. . ....|+++++|..|.++|+++|++|.||+|..||||.......... ..|+.
T Consensus 209 ~~g~~~~s~k~~~~~~p~~------v-~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~- 280 (476)
T COG5184 209 GQGSYKNSQKTSIQFTPLK------V-PKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP- 280 (476)
T ss_pred ccccccccccceeeeeeee------c-CchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCCh-
Confidence 8774433222110 11100 0 1358999999999999999999999999999999998765432221 12222
Q ss_pred eecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCcee
Q 011798 278 VALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHT 357 (477)
Q Consensus 278 ~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~ 357 (477)
+.-..|+.|+||.+|++||+++|++|+||.|.+||||.++.... ......+..+.......|..+++|..|+
T Consensus 281 --f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~------~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 281 --FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI------GALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred --hhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc------ceeeccccccccCCCceEEEEecCcceE
Confidence 12223789999999999999999999999999999999822111 1111122223333444589999999999
Q ss_pred EEEEeCCcEEEEeCCCCCCccCCC--CccccCCeecccccCceEEEEecCCceEEEecCCChhhhhhccccceeeecCCc
Q 011798 358 LVYMRDGRIHGWGYNSYGQAANEK--STYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNAS 435 (477)
Q Consensus 358 ~~l~~~g~v~~wG~n~~gqLG~~~--~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~~~ 435 (477)
++|..+|.||+||.+..+|||..+ ......|.++.. ..++..|+||..|.++.++++ +.|.||++++.++++..
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~-~~~~~~v~~gt~~~~~~t~~g---svy~wG~ge~gnlG~g~ 428 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV-AIKLEQVACGTHHNIARTDDG---SVYSWGWGEHGNLGNGP 428 (476)
T ss_pred EEEecCceEEEecCCccccccCcccceeecCCcccccc-ccceEEEEecCccceeeccCC---ceEEecCchhhhccCCc
Confidence 999999999999999999999988 444444444431 347999999999999999995 78889999999999765
Q ss_pred ceeecccc
Q 011798 436 EIEDVASR 443 (477)
Q Consensus 436 ~~~~~~~~ 443 (477)
.....+.+
T Consensus 429 ~~~~~~~p 436 (476)
T COG5184 429 KEADVLVP 436 (476)
T ss_pred hhhhcccc
Confidence 55555444
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=9.5e-41 Score=295.71 Aligned_cols=331 Identities=26% Similarity=0.446 Sum_probs=250.1
Q ss_pred CCcccccCC--CcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEe
Q 011798 1 MDINEIIGE--TARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVA 78 (477)
Q Consensus 1 ~~i~~i~~~--~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt 78 (477)
|.|+-|+.| .++.+ +|+-+|+.|.||.|..||||++ +......|+.|+.. ...+|++-+||++|+++||
T Consensus 56 v~iR~VasG~~aaH~v-li~megk~~~wGRNekGQLGhg-D~k~~e~Ptvi~gL-------~~~~iv~AA~GrnHTl~lt 126 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCV-LIDMEGKCYTWGRNEKGQLGHG-DMKQRERPTVISGL-------SKHKIVKAAAGRNHTLVLT 126 (443)
T ss_pred ceEEEEecccchhhEE-EEecccceeecccCccCccCcc-chhhccCCchhhhh-------hhhhHHHHhhccCcEEEEe
Confidence 356666666 33444 9999999999999999999988 55556677777632 5678999999999999999
Q ss_pred cCCcEEEEeCCCCCcCCCCCCcCc-ccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCc
Q 011798 79 SDGTLFTWGANEFGQLGDGTEEGR-KHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPR 157 (477)
Q Consensus 79 ~~G~vy~wG~n~~gqLG~~~~~~~-~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~ 157 (477)
.+|+||+||.|.+||||++..... ..|.++...
T Consensus 127 dtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~---------------------------------------------- 160 (443)
T KOG1427|consen 127 DTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVV---------------------------------------------- 160 (443)
T ss_pred cCCcEEEecccccccccccccccccccCCCcccc----------------------------------------------
Confidence 999999999999999999986532 223222111
Q ss_pred eeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccc-----cCccCCceEE
Q 011798 158 LFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLD-----EAPELEKITQ 232 (477)
Q Consensus 158 ~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~i~~ 232 (477)
...|+.|+||.++++.|+..+.+..+|.-.+||||++...+.......+.......+ .......|++
T Consensus 161 --------~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~ 232 (443)
T KOG1427|consen 161 --------SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVK 232 (443)
T ss_pred --------CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEE
Confidence 246889999999999999999999999999999999875443222111111000000 1123468999
Q ss_pred EecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecC--CceEEEEEccCceEEEEecCCcEEEEeCC
Q 011798 233 VSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALD--GIFIKDVACGGVHSCALTSKGALYAWGGS 310 (477)
Q Consensus 233 i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 310 (477)
++||.+|+++++++++||+||-+-||.||+.. ...+..|++++.+. +.--.++.||...++++.+-|.||.||.+
T Consensus 233 ~acg~nhtvavd~nkrVysWGFGGyGRLGHaE---qKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~ 309 (443)
T KOG1427|consen 233 VACGTNHTVAVDKNKRVYSWGFGGYGRLGHAE---QKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKI 309 (443)
T ss_pred EeccCcceeeecCCccEEEecccccccccccc---chhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecc
Confidence 99999999999999999999999999999966 44577888887654 44567889999999999999999999986
Q ss_pred CCCCCCCCCCCCccccCCCCCCcccccccee-ecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCC--CccccC
Q 011798 311 QAGQLGLGPQTRSFSLIPNESDTYFRNIPIL-VVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEK--STYAWY 387 (477)
Q Consensus 311 ~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~--~~~~~~ 387 (477)
... ++. .+.+.|.. ..+.++..+.|+..|.+ +..|..+.+||...++.++-+. ......
T Consensus 310 k~~----ge~-------------~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~ 371 (443)
T KOG1427|consen 310 KNN----GED-------------WMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAA 371 (443)
T ss_pred ccC----ccc-------------ccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccccccC
Confidence 531 110 11222322 24567889999999877 5677789999988877665432 334567
Q ss_pred CeecccccC-ceEEEEecCCceEEEecCC
Q 011798 388 PSPVDWCVG-EVRKLAAGGGHSAVLADAC 415 (477)
Q Consensus 388 p~~v~~~~~-~i~~v~~G~~~t~~l~~~~ 415 (477)
|..++.+.+ +|..|++|..|+++|+++-
T Consensus 372 Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 372 PKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred ccccchhcceeccceeeccceEEEEEccc
Confidence 888876655 8999999999999999864
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=274.73 Aligned_cols=313 Identities=27% Similarity=0.427 Sum_probs=243.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCC--CCccccCccCCCCcccCCCCCCCcEEEEEcc--cceeEEEecCCcEEEEeCCCCCcC
Q 011798 19 AKSAIYVWGYNHSGQTGRKGR--ERQLRIPKQLPPELFGCPAGANSRWLDIACG--HEHTAAVASDGTLFTWGANEFGQL 94 (477)
Q Consensus 19 ~~g~v~~wG~n~~GqLG~~~~--~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqL 94 (477)
.-|++..+|.-..-+.|.... +..+..|.++.+. ...+|+-|+.| ..|+++|+-+|+.|+||.|..|||
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l-------~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQL 90 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPL-------VGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQL 90 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceecccc-------ccceEEEEecccchhhEEEEecccceeecccCccCcc
Confidence 457788888776666664332 2244456665532 44566666655 579999999999999999999999
Q ss_pred CCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEec
Q 011798 95 GDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC 174 (477)
Q Consensus 95 G~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~ 174 (477)
|+++......|+.|+.|.. .+|++.+|
T Consensus 91 GhgD~k~~e~Ptvi~gL~~-----------------------------------------------------~~iv~AA~ 117 (443)
T KOG1427|consen 91 GHGDMKQRERPTVISGLSK-----------------------------------------------------HKIVKAAA 117 (443)
T ss_pred CccchhhccCCchhhhhhh-----------------------------------------------------hhHHHHhh
Confidence 9998888889998887653 46788899
Q ss_pred CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeC
Q 011798 175 GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 175 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~ 254 (477)
|.+|+++||++|.||+||.|.+||||.+........|.++... ...|+.|+||..+++.|+..+.+.++|.
T Consensus 118 GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~---------~~~v~~v~cga~ftv~l~~~~si~t~gl 188 (443)
T KOG1427|consen 118 GRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVV---------SDEVTNVACGADFTVWLSSTESILTAGL 188 (443)
T ss_pred ccCcEEEEecCCcEEEecccccccccccccccccccCCCcccc---------CccceeeccccceEEEeecccceeecCC
Confidence 9999999999999999999999999999876554444433221 2479999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC-----------CccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCc
Q 011798 255 GSVGQLGHCSLQSG-----------DKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRS 323 (477)
Q Consensus 255 n~~gqlg~~~~~~~-----------~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~ 323 (477)
..|||||++..... ...+.|..|..+.+..|++++||.+|++|++++++||+||-+-||.||+.+..+.
T Consensus 189 p~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDE 268 (443)
T KOG1427|consen 189 PQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDE 268 (443)
T ss_pred ccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhh
Confidence 99999999864321 1234566677888999999999999999999999999999999999999877665
Q ss_pred cccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecccccC-ceEEEE
Q 011798 324 FSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLA 402 (477)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~-~i~~v~ 402 (477)
..+........ ....-..+.||+..++.+.+-|.+|.||.+.. +.+.-.+|.++..+.+ ++..+.
T Consensus 269 mvpRlik~Fd~--------~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~ 334 (443)
T KOG1427|consen 269 MVPRLIKVFDR--------NNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMD 334 (443)
T ss_pred HHHHHHHHhcC--------CCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcC
Confidence 33222111111 11234478899999999999999999998753 2244567888876555 789999
Q ss_pred ecCCceEEEecC
Q 011798 403 AGGGHSAVLADA 414 (477)
Q Consensus 403 ~G~~~t~~l~~~ 414 (477)
|+..|.++-+++
T Consensus 335 ~~~~h~~v~ad~ 346 (443)
T KOG1427|consen 335 SGSMHHFVGADS 346 (443)
T ss_pred ccceeeeecccc
Confidence 999999988876
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.6e-26 Score=229.31 Aligned_cols=317 Identities=20% Similarity=0.287 Sum_probs=231.2
Q ss_pred cccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcC
Q 011798 15 DNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQL 94 (477)
Q Consensus 15 ~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqL 94 (477)
++++.-..||+||.|.+--||+|+... ...|+.+.... ..+.-+.+|+.+..|+++|++.|+||+||.+..|+|
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~-----~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRl 209 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFK-----TSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRL 209 (1267)
T ss_pred cccCCccceeEecccccccccccCCCC-CCChHHhHHHH-----hccHHHHHHHHhhceeeEecCCCcEEEeccCCCCcc
Confidence 367888899999999999999886543 45777765322 256778899999999999999999999999999999
Q ss_pred CCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEec
Q 011798 95 GDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC 174 (477)
Q Consensus 95 G~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~ 174 (477)
|.|.......|++|+.+.+ .++.+|++
T Consensus 210 G~gdeq~~~iPkrV~gL~g-----------------------------------------------------h~~~qisv 236 (1267)
T KOG0783|consen 210 GFGDEQYNFIPKRVPGLIG-----------------------------------------------------HKVIQISV 236 (1267)
T ss_pred CcCcccccccccccccccc-----------------------------------------------------cceEEEEe
Confidence 9998888889998886553 46778888
Q ss_pred CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeC
Q 011798 175 GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 175 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~ 254 (477)
...|+++||.+|-||+||.|.++|||..+.......|..|..... ..-..|+.|+||..|+++-++. .||+||.
T Consensus 237 s~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~-----kg~~~iIgvaAg~~hsVawt~~-~VY~wGl 310 (1267)
T KOG0783|consen 237 SHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRI-----KGFKQIIGVAAGKSHSVAWTDT-DVYSWGL 310 (1267)
T ss_pred ecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhh-----cchhhhhhhhcccceeeeeecc-eEEEecc
Confidence 999999999999999999999999999887666666666543211 1124799999999999999865 8999999
Q ss_pred CCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCcc
Q 011798 255 GSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTY 334 (477)
Q Consensus 255 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~ 334 (477)
| .||||..+. ......|+.+..+ ...|..++|...-+++++.++.+|++-+-..-.+......-. ...
T Consensus 311 N-~GQlGi~~n--~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lk--------s~~ 378 (1267)
T KOG0783|consen 311 N-NGQLGISDN--ISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLK--------SLK 378 (1267)
T ss_pred c-CceecCCCC--Cceeecchhhccc-ccceEEEEecCccEEEEecCCcEEEEecccceecCcchhccc--------eeE
Confidence 6 599997664 3456678766433 356899999999999999999999998644333321111000 000
Q ss_pred ccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecccccCceEEEEecCCceEEEecC
Q 011798 335 FRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADA 414 (477)
Q Consensus 335 ~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~ 414 (477)
...-|....-.++++..+...--+++++-|+||.|-++..- -....+.|.++- .|.+|+--.+..++++.|
T Consensus 379 V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-----~~~c~ftp~r~~----~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 379 VTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-----RTSCKFTPLRIF----EISDIAWTANSLILCTRD 449 (1267)
T ss_pred EecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-----eeeeecccceee----ehhhhhhccceEEEEecC
Confidence 00111111113566777777778899999999999865321 112233444432 456777667788888888
Q ss_pred CCh
Q 011798 415 CSL 417 (477)
Q Consensus 415 ~~l 417 (477)
|-.
T Consensus 450 Gc~ 452 (1267)
T KOG0783|consen 450 GCW 452 (1267)
T ss_pred cce
Confidence 743
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-23 Score=216.73 Aligned_cols=334 Identities=21% Similarity=0.233 Sum_probs=218.2
Q ss_pred CCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCC
Q 011798 58 AGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDG 137 (477)
Q Consensus 58 ~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~ 137 (477)
+.....-+.+..+++..++-+.+|+||.-|.. ..+|+-.....+....+ ..+|++|+.|-+.+.++..
T Consensus 475 ~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~--t~~Gl~e~G~nWmEL~l----~~~IVq~SVG~D~~~~~~~------ 542 (3738)
T KOG1428|consen 475 ANLHPQTVDLHFTREMAFIQARSGKVYYAGNG--TRFGLFETGNNWMELCL----PEPIVQISVGIDTIMFRSG------ 542 (3738)
T ss_pred cccCchheecccchhhhhhhhcCccEEEecCc--cEEeEEccCCceEEecC----CCceEEEEeccchhheeec------
Confidence 33566778899999999999999999999976 56776665554444333 3679999999999999876
Q ss_pred ccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecc
Q 011798 138 TISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGY 217 (477)
Q Consensus 138 ~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~ 217 (477)
.|+-|+.-........++....-....+|+.|.+...-.-.++++|++|..|.....- ....+.+.
T Consensus 543 ---A~~G~I~~v~D~k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~~---------n~SSqmln-- 608 (3738)
T KOG1428|consen 543 ---AGHGWIASVDDKKRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMRV---------NVSSQMLN-- 608 (3738)
T ss_pred ---cCcceEEeccCcccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEEe---------cchHHHhh--
Confidence 5555555444333222222222233567888876655556889999999998532100 00001111
Q ss_pred ccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceee-------------eecCCce
Q 011798 218 AKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRV-------------VALDGIF 284 (477)
Q Consensus 218 ~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i-------------~~~~~~~ 284 (477)
..++.-|.+++.|..|.++++.+|+||+||.|+.+|+|+-.... ....|+.- .-+.+..
T Consensus 609 ------~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~s--Tt~s~~~s~~~e~~iCP~G~HtW~~dt~ 680 (3738)
T KOG1428|consen 609 ------GLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTS--TTSSPRHSGRQEYQICPIGEHTWLTDTP 680 (3738)
T ss_pred ------ccccceeehhhccccceeEEEeCCeEEEEecCCccccccccccc--ccCCcccccceeecccCCccceeecCCc
Confidence 12335699999999999999999999999999999999743211 11111110 0011122
Q ss_pred EEEEEccCceEEE------EecCCcEEEEeCCCCCCCCCCC--------CCCc--------cccCCCCCCccccccceee
Q 011798 285 IKDVACGGVHSCA------LTSKGALYAWGGSQAGQLGLGP--------QTRS--------FSLIPNESDTYFRNIPILV 342 (477)
Q Consensus 285 i~~i~~G~~h~~~------lt~~G~vy~wG~n~~gqLG~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~ 342 (477)
-+...||...... -...|.+..+|.++.+.|-.|- ...+ +.......... ..|..+
T Consensus 681 ~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~--~HPs~V 758 (3738)
T KOG1428|consen 681 SVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRST--LHPSRV 758 (3738)
T ss_pred chhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccc--cCchhe
Confidence 2222333221111 1235677778877766553321 0000 00000000000 111111
Q ss_pred ------cCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecccccC-ceEEEEecCCceEEEecCC
Q 011798 343 ------VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLADAC 415 (477)
Q Consensus 343 ------~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~-~i~~v~~G~~~t~~l~~~~ 415 (477)
-..++.+|+||..|+++|.+|++||.||+|.+||||.|+......|+.|..+.+ .+++|+||.+||+++..||
T Consensus 759 ~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DG 838 (3738)
T KOG1428|consen 759 ILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDG 838 (3738)
T ss_pred eeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCC
Confidence 124688999999999999999999999999999999999999999999988877 7999999999999999999
Q ss_pred Chhhhhhccccc
Q 011798 416 SLKELCEFRLAE 427 (477)
Q Consensus 416 ~l~~l~~~~~~~ 427 (477)
++-.+..|+.++
T Consensus 839 sVFTFGaF~KGQ 850 (3738)
T KOG1428|consen 839 SVFTFGAFGKGQ 850 (3738)
T ss_pred cEEEeccccCcc
Confidence 887777776554
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-21 Score=201.97 Aligned_cols=280 Identities=20% Similarity=0.301 Sum_probs=191.1
Q ss_pred ccccCCCccccccc-CCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCc
Q 011798 4 NEIIGETARPVDNI-PAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82 (477)
Q Consensus 4 ~~i~~~~~~~~~~l-~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~ 82 (477)
+.+..+-++.++++ +.+|+||.-|... .+|+-..... -.+++ ...+|++|+.|-....++.-.|.
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~n---WmEL~---------l~~~IVq~SVG~D~~~~~~~A~~ 545 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNN---WMELC---------LPEPIVQISVGIDTIMFRSGAGH 545 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCc---eEEec---------CCCceEEEEeccchhheeeccCc
Confidence 34445555666544 6789999999643 3443222211 11222 34679999999988887765544
Q ss_pred --EEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCC-C-Cce
Q 011798 83 --LFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSN-F-PRL 158 (477)
Q Consensus 83 --vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~-~-~~~ 158 (477)
++.-|.. -.. ..-++....+.++|+.+.+....--.+.+ +|++|+.|...--. . ...
T Consensus 546 G~I~~v~D~--k~~--------~~~Rr~~P~n~rKIv~v~~s~~VY~~vSe---------nGkifM~G~~tm~~n~SSqm 606 (3738)
T KOG1428|consen 546 GWIASVDDK--KRN--------GRLRRLVPSNRRKIVHVCASGHVYGYVSE---------NGKIFMGGLHTMRVNVSSQM 606 (3738)
T ss_pred ceEEeccCc--ccc--------cchhhcCCCCcceeEEEeeeeEEEEEEcc---------CCeEEeecceeEEecchHHH
Confidence 4444422 111 11222333445678877766666666777 99999999743110 0 000
Q ss_pred eecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeee------------------------
Q 011798 159 FWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVI------------------------ 214 (477)
Q Consensus 159 ~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i------------------------ 214 (477)
+. -..+.-|.+++.|..|.++++.+|.||.||.|..+|+|+-........|+.-
T Consensus 607 ln--~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa 684 (3738)
T KOG1428|consen 607 LN--GLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCA 684 (3738)
T ss_pred hh--ccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhh
Confidence 00 1124458899999999999999999999999999999974311111111100
Q ss_pred -------------------------------------------------------------------ec--cccccccCc
Q 011798 215 -------------------------------------------------------------------KG--YAKFLDEAP 225 (477)
Q Consensus 215 -------------------------------------------------------------------~~--~~~~~~~~~ 225 (477)
.. ..-.....+
T Consensus 685 ~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~ 764 (3738)
T KOG1428|consen 685 QCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGP 764 (3738)
T ss_pred hcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCC
Confidence 00 000011223
Q ss_pred cCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEE
Q 011798 226 ELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALY 305 (477)
Q Consensus 226 ~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy 305 (477)
...++.+|+||..|+++|.++++||++|.|.+||||+++..+ ...|+.+..+++..|++|++|.+|++++..||+||
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~S---k~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLS---KNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCcccc---CCCcceEEcCCCCceEEEecCCCceEEEecCCcEE
Confidence 345799999999999999999999999999999999998654 34799999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCC
Q 011798 306 AWGGSQAGQLGLGPQT 321 (477)
Q Consensus 306 ~wG~n~~gqLG~~~~~ 321 (477)
.+|.-..|||+...-.
T Consensus 842 TFGaF~KGQL~RP~~e 857 (3738)
T KOG1428|consen 842 TFGAFGKGQLARPAGE 857 (3738)
T ss_pred EeccccCccccCcccc
Confidence 9999999999986443
No 8
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.88 E-value=8.9e-23 Score=202.94 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=169.7
Q ss_pred EEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCC
Q 011798 180 VALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQ 259 (477)
Q Consensus 180 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gq 259 (477)
.+++.-..||.||.|.+.-||.+...+. ..|..+..+.. .+.-+.+|+.+.+|++++++.|+||++|.+.-|.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~-~~Pe~Vdlf~~------Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGR 208 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEP-SSPERVDLFKT------SGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGR 208 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCC-CChHHhHHHHh------ccHHHHHHHHhhceeeEecCCCcEEEeccCCCCc
Confidence 4566678999999999999999876543 34555544332 2234677999999999999999999999999999
Q ss_pred CCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccc-c
Q 011798 260 LGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRN-I 338 (477)
Q Consensus 260 lg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~-~ 338 (477)
||++... ..+.|++++.+.+.+|.+|++...|+++||++|.||+||.|..+|||..+....-. .+.. .
T Consensus 209 lG~gdeq---~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~--------~p~qI~ 277 (1267)
T KOG0783|consen 209 LGFGDEQ---YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKD--------DPIQIT 277 (1267)
T ss_pred cCcCccc---ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcC--------chhhhh
Confidence 9999643 45789999999999999999999999999999999999999999999865433210 0000 1
Q ss_pred ceeecC-CCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCC-CccccCCeecccccCceEEEEecCCceEEEecCCC
Q 011798 339 PILVVP-NGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEK-STYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACS 416 (477)
Q Consensus 339 ~~~~~~-~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~-~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~~ 416 (477)
+....+ ..|+.|+||..|+++.++. .||.||.|. ||||..+ ...+..|..+......|+.|+|-..-|+++++.+.
T Consensus 278 a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~ 355 (1267)
T KOG0783|consen 278 ARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNS 355 (1267)
T ss_pred hHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCc
Confidence 111112 2578899999999999855 599999874 9999654 44466787665555679999999999999998754
Q ss_pred h
Q 011798 417 L 417 (477)
Q Consensus 417 l 417 (477)
+
T Consensus 356 i 356 (1267)
T KOG0783|consen 356 I 356 (1267)
T ss_pred E
Confidence 4
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.22 E-value=1.2e-11 Score=84.82 Aligned_cols=49 Identities=33% Similarity=0.656 Sum_probs=45.5
Q ss_pred CCcEEEEeCCCCCCcc-CCCCccccCCeecccccC-ceEEEEecCCceEEE
Q 011798 363 DGRIHGWGYNSYGQAA-NEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVL 411 (477)
Q Consensus 363 ~g~v~~wG~n~~gqLG-~~~~~~~~~p~~v~~~~~-~i~~v~~G~~~t~~l 411 (477)
||+||+||.|.+|||| .+.......|++++.+.. +|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 888889999999997765 899999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.21 E-value=1.1e-11 Score=85.06 Aligned_cols=50 Identities=36% Similarity=0.795 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCcCC-CCCCcCcccccccccccccceEEEeeCCceeEEE
Q 011798 80 DGTLFTWGANEFGQLG-DGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAI 129 (477)
Q Consensus 80 ~G~vy~wG~n~~gqLG-~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l 129 (477)
||+||+||.|.+|||| .+.......|++++.+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7777788999999999999999999999999986
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.19 E-value=2.7e-11 Score=72.07 Aligned_cols=30 Identities=50% Similarity=1.040 Sum_probs=26.1
Q ss_pred EEEEEcccceeEEEecCCcEEEEeCCCCCc
Q 011798 64 WLDIACGHEHTAAVASDGTLFTWGANEFGQ 93 (477)
Q Consensus 64 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gq 93 (477)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=5e-11 Score=70.93 Aligned_cols=30 Identities=53% Similarity=1.202 Sum_probs=26.0
Q ss_pred EEEEEccCceEEEEecCCcEEEEeCCCCCC
Q 011798 285 IKDVACGGVHSCALTSKGALYAWGGSQAGQ 314 (477)
Q Consensus 285 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gq 314 (477)
|++|+||..|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999997
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.4e-12 Score=129.56 Aligned_cols=143 Identities=29% Similarity=0.534 Sum_probs=117.8
Q ss_pred CCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccc
Q 011798 61 NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTIS 140 (477)
Q Consensus 61 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~ 140 (477)
..+|.|++||.+|+++++..|++|+||.|.+||+|.+-......|.+++.+.+.+..+|++|..|+++++.
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~--------- 83 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS--------- 83 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh---------
Confidence 45799999999999999999999999999999999995544444999999999999999999999998851
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKF 220 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~ 220 (477)
|+++++.+|+++++|....+|+|+....+... |..+..
T Consensus 84 -------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~-~~~v~e---- 121 (850)
T KOG0941|consen 84 -------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL-PLLVLE---- 121 (850)
T ss_pred -------------------------------------chhhcchhccccccCCcccccccccccccccc-cHHHHH----
Confidence 89999999999999999999999854433222 221111
Q ss_pred cccCccCCceEEEecCCceEEEE-eeCCcEEEEeCCCCC
Q 011798 221 LDEAPELEKITQVSCGEYHSAAV-SENGEVYTWGLGSVG 258 (477)
Q Consensus 221 ~~~~~~~~~i~~i~~G~~~s~~l-t~~g~v~~wG~n~~g 258 (477)
.-...+++|+||..|+.+. ..-|++|..|.+..|
T Consensus 122 ----~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 122 ----LIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ----HHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 1125799999999998875 567999999998877
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-11 Score=123.49 Aligned_cols=142 Identities=30% Similarity=0.478 Sum_probs=121.8
Q ss_pred CceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEE
Q 011798 228 EKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAW 307 (477)
Q Consensus 228 ~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~w 307 (477)
.++.+++||.+|+++++..|++|+||.|.+||+|++... . .. .|..++.+.+.+..+|++|..|++++..
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~-~-~~-~p~~~~sl~g~p~a~v~~g~~hs~~lS~------- 83 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYF-P-DA-KPEPVESLKGVPLAQVSAGEAHSFALSS------- 83 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccC-C-CC-CCccchhhcCCcHHHHhcCCCcchhhhh-------
Confidence 579999999999999999999999999999999998322 2 22 3899999999999999999999999876
Q ss_pred eCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccC
Q 011798 308 GGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWY 387 (477)
Q Consensus 308 G~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~ 387 (477)
|+++++..|.++.+|....+|+|+...++...
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 88899999999999999999999987777788
Q ss_pred Ceecccc-cCceEEEEecCCceEEEecCCChhhhhhcccccee
Q 011798 388 PSPVDWC-VGEVRKLAAGGGHSAVLADACSLKELCEFRLAESV 429 (477)
Q Consensus 388 p~~v~~~-~~~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~ 429 (477)
|..+.-. ...+..|+||-.||++.+.. +++.+.++.+.++
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~~--l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVPR--LGQSFSFGKGASG 156 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhhh--hcceeecccCCCC
Confidence 8877533 44799999999999998865 5777777777665
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.17 E-value=3.5 Score=47.32 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=69.9
Q ss_pred eecCCceEEEEE-ccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCce
Q 011798 278 VALDGIFIKDVA-CGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSH 356 (477)
Q Consensus 278 ~~~~~~~i~~i~-~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h 356 (477)
..+++..|+.++ .+.++.++|++.|++-..=. -|. +..++..-....|++|+.-..|
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k--~g~--------------------p~~l~~~gl~G~ik~l~lD~~~ 755 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK--PGR--------------------PVPLSRPGLSGEIKDLALDEKQ 755 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCccccccC--CCC--------------------CccCCCCCCCcchhheeecccc
Confidence 344555566655 46677788888777654321 000 1112222234679999999987
Q ss_pred eE-EEEeCCcEEEEeCCCCCCccCC-CCccccCCeecccccCceEEEEecCCceEEEecCC
Q 011798 357 TL-VYMRDGRIHGWGYNSYGQAANE-KSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADAC 415 (477)
Q Consensus 357 ~~-~l~~~g~v~~wG~n~~gqLG~~-~~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~ 415 (477)
.+ |++.+|++|.-=.-...+.-.+ .....|.|..++ -..+|..+....+|.+.+.-++
T Consensus 756 nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 756 NLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 76 7889999996433222221122 223567777776 3458999999999988887654
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.74 E-value=5.5 Score=40.56 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCCCCcEEEEecCC-ceeEEEecCCcEE-EeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceE
Q 011798 163 FTPNTIICQVSCGS-VHVVALSECGLLQ-AWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHS 240 (477)
Q Consensus 163 ~~~~~~i~~vs~G~-~~~~~lt~~G~vy-~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s 240 (477)
..+...+.+|++|. ....+++.+|+|| --|-.++.+.|..-. ....|+. ...++.|+.|....
T Consensus 223 i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk--dI~tP~~-------------a~~~v~iSvGt~t~ 287 (705)
T KOG3669|consen 223 ICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK--DIVTPRQ-------------ALEPVCISVGTQTL 287 (705)
T ss_pred cCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh--hccCccc-------------ccceEEEEeccceE
Confidence 34455799999998 7788999999865 567777777664432 2222221 12489999998888
Q ss_pred EEEeeCCcEEE
Q 011798 241 AAVSENGEVYT 251 (477)
Q Consensus 241 ~~lt~~g~v~~ 251 (477)
-+||.+|++|.
T Consensus 288 Waldndg~lwf 298 (705)
T KOG3669|consen 288 WALDNDGNLWF 298 (705)
T ss_pred EEEecCCcEEE
Confidence 89999999986
No 17
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.037 Score=59.74 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=84.1
Q ss_pred CCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEE
Q 011798 227 LEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYA 306 (477)
Q Consensus 227 ~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~ 306 (477)
..+++.|.+-++.-++|..+|++|.|-+...--+...-..+.+..........+.+.+|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 45788888888888999999999999987665443322222111111122335678899999999999999999999999
Q ss_pred EeCCC----CCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCC
Q 011798 307 WGGSQ----AGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 307 wG~n~----~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n 372 (477)
|=+-. .-.|...... ..-.....+++.-|-..|.++...|..+|.||--
T Consensus 453 WlDEcgagV~fkLa~ea~T-----------------kieed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 453 WLDECGAGVAFKLAHEAQT-----------------KIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred HHhhhhhhhhhhhhhhhhh-----------------hhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 95321 1111111000 0001123344566777888999999999999953
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=85.63 E-value=47 Score=34.22 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=51.7
Q ss_pred CcEEEEEccc-ceeEEEecCCcEE-EEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCcc
Q 011798 62 SRWLDIACGH-EHTAAVASDGTLF-TWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTI 139 (477)
Q Consensus 62 ~~i~~i~~G~-~h~~~lt~~G~vy-~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~ 139 (477)
..+.+|++|. .-..+++.+|.|| --|--...+.|..-. +...|.... .++.|+.|....-||+.
T Consensus 227 t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldn-------- 292 (705)
T KOG3669|consen 227 TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDN-------- 292 (705)
T ss_pred CccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEec--------
Confidence 4688999999 5667999999975 567666666664333 334444332 28899999999999998
Q ss_pred ccCcEEEe
Q 011798 140 STSRLWVW 147 (477)
Q Consensus 140 ~~g~v~~w 147 (477)
++.+|.=
T Consensus 293 -dg~lwfr 299 (705)
T KOG3669|consen 293 -DGNLWFR 299 (705)
T ss_pred -CCcEEEE
Confidence 8888864
No 19
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.18 E-value=8.1 Score=35.10 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=24.8
Q ss_pred CCcEEEEecCCceeEEEecCCcEEEeec
Q 011798 166 NTIICQVSCGSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 166 ~~~i~~vs~G~~~~~~lt~~G~vy~wG~ 193 (477)
..+++.+.|-..+.++||.+|.+|.|=-
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 5578889999999999999999999953
No 20
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=80.28 E-value=24 Score=41.01 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCcEEEEec-CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEE-EE
Q 011798 166 NTIICQVSC-GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSA-AV 243 (477)
Q Consensus 166 ~~~i~~vs~-G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~-~l 243 (477)
...|..++. +.++.++|++.|++-..= .-| .|..++. ..-..+|++|+.-..|.+ |+
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g------------~p~~l~~-------~gl~G~ik~l~lD~~~nL~Al 760 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG------------RPVPLSR-------PGLSGEIKDLALDEKQNLYAL 760 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc--CCC------------CCccCCC-------CCCCcchhheeeccccceeEe
Confidence 345555554 778999999999885431 000 1221110 001247999999877765 78
Q ss_pred eeCCcEEE-----EeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCC
Q 011798 244 SENGEVYT-----WGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKG 302 (477)
Q Consensus 244 t~~g~v~~-----wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G 302 (477)
+.+|++|. |=.+..+- ......+++....+.+|..+.....|.+.+.-++
T Consensus 761 t~~G~Lf~~~k~~WQ~~~~~~---------~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 761 TSTGELFRLPKEAWQGNAEGD---------QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCCCceeecCHHHhhCcccCC---------ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 99999997 43333220 0112333444446677999999998888876544
No 21
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.05 E-value=1.3e+02 Score=34.33 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=36.2
Q ss_pred ccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeC
Q 011798 16 NIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGA 88 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~ 88 (477)
=++.|.++|.|=.|..+++-.-+..+... +...++.+. .+..+-.| .|.++|..-=+|+..|-
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtI----l~V~LvkPk--pgvFv~~I----qhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTI----LKVGLVKPK--PGVFVPEI----QHLLVVATPVEIVILGV 156 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhh----eeeeeecCC--CCcchhhh----heeEEecccceEEEEEE
Confidence 47899999999999877765432221110 000010000 12222222 48999998889998885
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=0.85 Score=49.95 Aligned_cols=133 Identities=18% Similarity=0.276 Sum_probs=90.6
Q ss_pred CCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCC--cCccccccc-ccccccceEEEeeCCceeEEEeccC
Q 011798 57 PAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTE--EGRKHPEKV-KQLQSEFVKSISCGAHCTAAIAEPR 133 (477)
Q Consensus 57 ~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~--~~~~~p~~v-~~~~~~~i~~i~~g~~~s~~l~~~~ 133 (477)
|.....+++.|.+-.+..++|..+|++|.|-+...--|-.+-. ....-|... ..+.+.+|+.+++..-..-++++
T Consensus 369 pDddan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~-- 446 (3015)
T KOG0943|consen 369 PDDDANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE-- 446 (3015)
T ss_pred cCCCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec--
Confidence 4446778999999999999999999999998865443332111 122223322 23567899999999999999998
Q ss_pred CCCCccccCcEEEecCCCCCCCC----cee-ecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCC
Q 011798 134 ENDGTISTSRLWVWGQNQGSNFP----RLF-WGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQ 198 (477)
Q Consensus 134 ~~~~~~~~g~v~~wG~~~~~~~~----~~~-~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gq 198 (477)
+|++..|=..-..... ... ...-.....+++.-|...|.++...|..+|-||---+.|
T Consensus 447 -------nghlasWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 447 -------NGHLASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred -------CCchhhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9999998543322111 000 001122345777788889999999999999999655544
No 23
>PHA02713 hypothetical protein; Provisional
Probab=75.41 E-value=1.1e+02 Score=32.35 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=26.0
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec---CCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC---GSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~---G~~~~~~lt~~G~vy~wG~ 193 (477)
+|+||+.|..........+...-+.......++. ...+..+..-+|++|..|-
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG 406 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeC
Confidence 8999999976433221111111111222332222 2222233455899999985
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.40 E-value=62 Score=30.30 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEccc---ceeEEEecCCcEE
Q 011798 8 GETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGH---EHTAAVASDGTLF 84 (477)
Q Consensus 8 ~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~G~vy 84 (477)
.|.+....+...||.||.=++. .|.+|+-+ | ...+++.+..|. -|.+++..||..|
T Consensus 60 ~G~ap~dvapapdG~VWft~qg-~gaiGhLd-------P-------------~tGev~~ypLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQG-TGAIGHLD-------P-------------ATGEVETYPLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred CCCCccccccCCCCceEEecCc-cccceecC-------C-------------CCCceEEEecCCCCCCceEEECCCCCee
Confidence 4444455588999999976653 45555321 1 223344444433 3788888899988
Q ss_pred EEeCC-CCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCC
Q 011798 85 TWGAN-EFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAF 163 (477)
Q Consensus 85 ~wG~n-~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~ 163 (477)
.+-.. .-++++..+......|.+. +.+-+.-.++.++. .|.+|.-|.+..-. + +
T Consensus 119 itd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vfD~---------~G~lWFt~q~G~yG--r-----L 173 (353)
T COG4257 119 ITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVFDP---------WGNLWFTGQIGAYG--R-----L 173 (353)
T ss_pred EecCcceeEEecCcccceEEeeccc---------ccCCCcccceeeCC---------CccEEEeeccccce--e-----c
Confidence 88654 3333332222222222222 22233344556665 89999888743211 1 1
Q ss_pred CCCCcEEEEe----cCCceeEEEecCCcEEEe
Q 011798 164 TPNTIICQVS----CGSVHVVALSECGLLQAW 191 (477)
Q Consensus 164 ~~~~~i~~vs----~G~~~~~~lt~~G~vy~w 191 (477)
.+...+++|. .+.-.-++.|.+|+||.-
T Consensus 174 dPa~~~i~vfpaPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 174 DPARNVISVFPAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CcccCceeeeccCCCCCCcceEECCCCcEEEE
Confidence 1222233332 244567899999999986
No 25
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.25 E-value=1.7e+02 Score=33.08 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEecCCce--eEEEecCCcEEEee
Q 011798 162 AFTPNTIICQVSCGSVH--VVALSECGLLQAWG 192 (477)
Q Consensus 162 ~~~~~~~i~~vs~G~~~--~~~lt~~G~vy~wG 192 (477)
.+.-...|.+|+.+..+ .++++.+|.++.|-
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 33445679999998888 89999999876664
No 26
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.08 E-value=76 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.3
Q ss_pred EEccCceEEEEecCCcEEEEeC
Q 011798 288 VACGGVHSCALTSKGALYAWGG 309 (477)
Q Consensus 288 i~~G~~h~~~lt~~G~vy~wG~ 309 (477)
......+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4456666666777899999994
No 27
>PHA03098 kelch-like protein; Provisional
Probab=71.98 E-value=1.3e+02 Score=31.33 Aligned_cols=52 Identities=13% Similarity=-0.041 Sum_probs=25.1
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEe----cCCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVS----CGSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs----~G~~~~~~lt~~G~vy~wG~ 193 (477)
++++|++|..........+...-+...+...+. .-..|++ ..-++++|.+|-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~~~iYv~GG 397 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVNNLIYVIGG 397 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEECCEEEEECC
Confidence 789999987543221111111111112222221 1233444 445789999985
No 28
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=71.31 E-value=71 Score=33.75 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=51.4
Q ss_pred cCcEEEecCCCCCC-CCceeecCCCCCCcEEEEec---CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeec
Q 011798 141 TSRLWVWGQNQGSN-FPRLFWGAFTPNTIICQVSC---GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKG 216 (477)
Q Consensus 141 ~g~v~~wG~~~~~~-~~~~~~~~~~~~~~i~~vs~---G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~ 216 (477)
+|++|+.|-..... .-..+..-.+.....+.++. -..+.-+..-++++|+.|-... +. ....+..
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~----------~~~~VE~ 495 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TS----------ALSSVER 495 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CC----------ccceEEE
Confidence 89999999866555 22222222222333333332 2223336666899999984332 11 0111221
Q ss_pred cccccccCccCCceEEEecCCceEEEEeeCCcEEEEeC
Q 011798 217 YAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 217 ~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~ 254 (477)
+.+ ....-..+........+.-+..-++++|+-|-
T Consensus 496 ydp---~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 496 YDP---ETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EcC---CCCceeEcccCccccccccEEEECCEEEEEec
Confidence 111 11111233344456677777778999999886
No 29
>PHA03098 kelch-like protein; Provisional
Probab=68.71 E-value=56 Score=34.06 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.2
Q ss_pred eeEEEecCCcEEEEeCC
Q 011798 73 HTAAVASDGTLFTWGAN 89 (477)
Q Consensus 73 h~~~lt~~G~vy~wG~n 89 (477)
|+++. -+|+||++|-.
T Consensus 336 ~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 336 PGVTV-FNNRIYVIGGI 351 (534)
T ss_pred ceEEE-ECCEEEEEeCC
Confidence 44443 47899999964
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=66.91 E-value=1.1e+02 Score=28.30 Aligned_cols=89 Identities=18% Similarity=0.354 Sum_probs=49.2
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC--CceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG--SVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYA 218 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~ 218 (477)
||.+-+|-... .+.++. +.....|..|.-- ..+.+.-+.+|.|+.|-....-- . -.++
T Consensus 104 Dgt~kIWdlR~-~~~qR~----~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c-------~----~~li---- 163 (311)
T KOG0315|consen 104 DGTVKIWDLRS-LSCQRN----YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC-------T----HELI---- 163 (311)
T ss_pred CceEEEEeccC-cccchh----ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc-------c----cccC----
Confidence 77777887654 222222 2223445555443 34455557789999995322100 0 0111
Q ss_pred cccccCccCCceEEEecCCceE--EEEeeCCcEEEEeC
Q 011798 219 KFLDEAPELEKITQVSCGEYHS--AAVSENGEVYTWGL 254 (477)
Q Consensus 219 ~~~~~~~~~~~i~~i~~G~~~s--~~lt~~g~v~~wG~ 254 (477)
++....|.+++....-+ ++.++.|+.|+|-.
T Consensus 164 -----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 164 -----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred -----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 12235677777665544 46788999999976
No 31
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=66.68 E-value=9.9 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.5
Q ss_pred CcEEEEEccc-ceeEEEecCCcEEEE
Q 011798 62 SRWLDIACGH-EHTAAVASDGTLFTW 86 (477)
Q Consensus 62 ~~i~~i~~G~-~h~~~lt~~G~vy~w 86 (477)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5689999999 788899999999853
No 32
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.36 E-value=9.7 Score=34.57 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=30.4
Q ss_pred ccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCC
Q 011798 337 NIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 337 ~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n 372 (477)
-+|.+..+.++..+.|-..+.++||++|.+|+|=-.
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 346666778899999999999999999999999543
No 33
>PHA02713 hypothetical protein; Provisional
Probab=64.65 E-value=51 Score=34.71 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=13.2
Q ss_pred ccceeEEEecCCcEEEEeCC
Q 011798 70 GHEHTAAVASDGTLFTWGAN 89 (477)
Q Consensus 70 G~~h~~~lt~~G~vy~wG~n 89 (477)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33334444568999999964
No 34
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=58.91 E-value=1.7e+02 Score=28.09 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=27.0
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec----CCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC----GSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~----G~~~~~~lt~~G~vy~wG~ 193 (477)
+++||++|-.........+...-+...+...+.. ...+..+..-++++|.+|-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGG 179 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcC
Confidence 7899999875432221111111112223333321 1233444566789999984
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.73 E-value=2.7e+02 Score=29.98 Aligned_cols=122 Identities=18% Similarity=0.270 Sum_probs=65.3
Q ss_pred cEEEEEcccc--eeEEEecCCcEEEEeCCCCCcCCCCCCcCccccccccccc--ccceEEEeeCCceeEEEeccCCCCCc
Q 011798 63 RWLDIACGHE--HTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQ--SEFVKSISCGAHCTAAIAEPRENDGT 138 (477)
Q Consensus 63 ~i~~i~~G~~--h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~--~~~i~~i~~g~~~s~~l~~~~~~~~~ 138 (477)
-|.+++.+.+ -++++...|.-.++|+..-|||..=....... |-..+ -..+..++-..+..+..+.-
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDgq~iaTG~------ 369 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDGQLIATGA------ 369 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce---eeeccccccceeeEEECCCCcEEEecc------
Confidence 3455555543 24556667888899998888886433221110 10011 11244444444433333221
Q ss_pred cccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCC
Q 011798 139 ISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEY 196 (477)
Q Consensus 139 ~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~ 196 (477)
.||+|-+|-....-.+-.. .........++++.-.+..+..+-||+|-+|-...+
T Consensus 370 -eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 370 -EDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred -CCCcEEEEeccCceEEEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 2788888876543221111 112233456666777777777888999999975544
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.12 E-value=2.9e+02 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=29.2
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEE--ecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVAL--SECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~l--t~~G~vy~wG~ 193 (477)
+..+..|-.. ...+++.+.......--|.+-..|.+..++. ++|++||-|-.
T Consensus 416 ~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 416 DQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 6677778766 3333333322222223355555566644444 57999999964
No 37
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=47.30 E-value=21 Score=22.19 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.0
Q ss_pred eeEEEecCCcEEEEeCC
Q 011798 73 HTAAVASDGTLFTWGAN 89 (477)
Q Consensus 73 h~~~lt~~G~vy~wG~n 89 (477)
+.++++.+|.||+.|.-
T Consensus 16 ~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEECCCCCEEEEEee
Confidence 67899999999999974
No 38
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=45.78 E-value=3.5e+02 Score=27.72 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=32.8
Q ss_pred EEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecccccCceEEEEecCCceEEEecC
Q 011798 350 VACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADA 414 (477)
Q Consensus 350 i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~ 414 (477)
+--|.-+++.+..+|.+.+ |--+....-=++......|+.++--.+.|..|+-|..-.++=|..
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 5556677888888887777 422211111111111223444443345677777776664444443
No 39
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=45.04 E-value=59 Score=18.58 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.1
Q ss_pred CceEEEecCCceEEEEeeCCcEEE
Q 011798 228 EKITQVSCGEYHSAAVSENGEVYT 251 (477)
Q Consensus 228 ~~i~~i~~G~~~s~~lt~~g~v~~ 251 (477)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 579999999999999998876544
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=44.40 E-value=2.6e+02 Score=25.87 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=39.6
Q ss_pred eEEEecC--CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCc--eEEEEecCCcEE
Q 011798 230 ITQVSCG--EYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV--HSCALTSKGALY 305 (477)
Q Consensus 230 i~~i~~G--~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--h~~~lt~~G~vy 305 (477)
|..|.-- ..+-+.-+.+|+|++|-....- ......|... ..|.+++.... ...+.+..|++|
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~---------c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENS---------CTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCc---------cccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEE
Confidence 4444443 3344455788999999754321 1223344332 34666666544 445678889999
Q ss_pred EEeCC
Q 011798 306 AWGGS 310 (477)
Q Consensus 306 ~wG~n 310 (477)
+|-.-
T Consensus 193 vW~l~ 197 (311)
T KOG0315|consen 193 VWRLL 197 (311)
T ss_pred EEEcc
Confidence 99853
No 41
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.50 E-value=3.6e+02 Score=27.19 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCcEEEEEcccceeE--EEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCc
Q 011798 61 NSRWLDIACGHEHTA--AVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGT 138 (477)
Q Consensus 61 ~~~i~~i~~G~~h~~--~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~ 138 (477)
+..+..+++-..-.+ +=|..|++|.|=-+. |.|= -..-.+ -..|..+....+-+.+++..+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL---------~v~~aH--YQ~ITcL~fs~dgs~iiTgsk----- 143 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILL---------NVLSAH--YQSITCLKFSDDGSHIITGSK----- 143 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHH---------HHHHhh--ccceeEEEEeCCCcEEEecCC-----
Confidence 345666665544333 334689999997654 2220 000111 134666666777777777654
Q ss_pred cccCcEEEecC
Q 011798 139 ISTSRLWVWGQ 149 (477)
Q Consensus 139 ~~~g~v~~wG~ 149 (477)
||.|.+|-.
T Consensus 144 --Dg~V~vW~l 152 (476)
T KOG0646|consen 144 --DGAVLVWLL 152 (476)
T ss_pred --CccEEEEEE
Confidence 899999974
No 42
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=43.06 E-value=2.2e+02 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=18.6
Q ss_pred ceEEEecCCceEEEEeeCCcEEEEeCCCCCC
Q 011798 229 KITQVSCGEYHSAAVSENGEVYTWGLGSVGQ 259 (477)
Q Consensus 229 ~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gq 259 (477)
+|-.++.-..| ++...+|+||.|=.++.-.
T Consensus 64 piy~~~f~d~~-Lls~gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 64 PIYYLAFHDDF-LLSGGDGLVYGWEWNEEEE 93 (325)
T ss_pred Ceeeeeeehhh-eeeccCceEEEeeehhhhh
Confidence 44455443333 2334579999999987655
No 43
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=42.64 E-value=34 Score=36.14 Aligned_cols=101 Identities=30% Similarity=0.367 Sum_probs=56.3
Q ss_pred EecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCc-EE
Q 011798 172 VSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGE-VY 250 (477)
Q Consensus 172 vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~-v~ 250 (477)
|+.|..|-+++. ||.|-.|..+.- ..| ..+|..++....-++++|.-.+ |-
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as------------nki------------ss~Vsav~fsEdgSYfvT~gnrHvk 189 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS------------NKI------------SSVVSAVAFSEDGSYFVTSGNRHVK 189 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc------------ccc------------ceeEEEEEEccCCceeeeeeeeeEE
Confidence 566888887775 788877665431 001 1356666666666666665443 33
Q ss_pred EEeCCCCCCCCCCCCCCCCccccceeee---ecCCceEEEEEccCc----eEEEEecCCcEEEE
Q 011798 251 TWGLGSVGQLGHCSLQSGDKELLPRRVV---ALDGIFIKDVACGGV----HSCALTSKGALYAW 307 (477)
Q Consensus 251 ~wG~n~~gqlg~~~~~~~~~~~~p~~i~---~~~~~~i~~i~~G~~----h~~~lt~~G~vy~w 307 (477)
.|=. |.+. ...++.++|-+-. .+.+..+..++||.. .+++||..|.|.-+
T Consensus 190 ~wyl----~~~~---KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 190 LWYL----QIQS---KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEEe----eccc---cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 3311 1111 1123334444322 334456888999977 89999997665443
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=35.96 E-value=4e+02 Score=25.54 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=18.4
Q ss_pred ccCCCcccccccCCCCcEEEEeCC
Q 011798 6 IIGETARPVDNIPAKSAIYVWGYN 29 (477)
Q Consensus 6 i~~~~~~~~~~l~~~g~v~~wG~n 29 (477)
+|...++++....+||.|-+|-.-
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGK 378 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCc
Confidence 455567777788899999999743
No 45
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=35.68 E-value=2.3e+02 Score=30.35 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred ccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccc----eeEEEecCCcEEEEeC
Q 011798 16 NIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHE----HTAAVASDGTLFTWGA 88 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~----h~~~lt~~G~vy~wG~ 88 (477)
++++||.-|+---|.+=.++.-.....+..|.+++....-........+.+|+||.. .+++||..|.|--|-+
T Consensus 172 ~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 172 AFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred EEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 677888777666565555554333444555666665433333335667889999998 8999999999887754
No 46
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.66 E-value=4.7e+02 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.3
Q ss_pred CCcEEEEecC--CceeEEEecCCcEEEe
Q 011798 166 NTIICQVSCG--SVHVVALSECGLLQAW 191 (477)
Q Consensus 166 ~~~i~~vs~G--~~~~~~lt~~G~vy~w 191 (477)
..++.+|+.+ ..+.++++++|++|..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 3467787776 4577788889999875
No 47
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.03 E-value=7.2e+02 Score=28.20 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCCcEEEEEcccce--eEEEecCCcEEEEeC
Q 011798 60 ANSRWLDIACGHEH--TAAVASDGTLFTWGA 88 (477)
Q Consensus 60 ~~~~i~~i~~G~~h--~~~lt~~G~vy~wG~ 88 (477)
....|.+|+....+ .++|+.+|.|+.|=.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 56789999999988 799999998877654
No 48
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.85 E-value=6.2e+02 Score=29.38 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=74.3
Q ss_pred cCcEEEecCCCCCCCCceeecCC-CCCCcEEEEecC-----CceeEEEecCCcEEEeecCCC-CCCcCCCCCCCCCCCee
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAF-TPNTIICQVSCG-----SVHVVALSECGLLQAWGYNEY-GQLGRGITCEGLQGPRV 213 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~-~~~~~i~~vs~G-----~~~~~~lt~~G~vy~wG~n~~-gqlG~~~~~~~~~~~~~ 213 (477)
|.++|.|-.+.+++.+..-.... .-...+++...| =.|.++|...-+|+-.|-... ...+.....
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~-------- 169 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN-------- 169 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc--------
Confidence 99999999998766543211000 000111111122 248888888888888874321 111111110
Q ss_pred eeccccccccCccCCceEEEec-CCceEEEE-eeCCcEEEEeCCC-------------CCCCCCC--CCCCCCcccccee
Q 011798 214 IKGYAKFLDEAPELEKITQVSC-GEYHSAAV-SENGEVYTWGLGS-------------VGQLGHC--SLQSGDKELLPRR 276 (477)
Q Consensus 214 i~~~~~~~~~~~~~~~i~~i~~-G~~~s~~l-t~~g~v~~wG~n~-------------~gqlg~~--~~~~~~~~~~p~~ 276 (477)
..-+|+. |.+-.++. +++|+||.-|.+. +++-.+- ...+.-....|..
T Consensus 170 ---------------~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 170 ---------------TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ---------------cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 0122222 33333333 6677777766543 1110000 0000111234553
Q ss_pred eeec--CCceEEEEEccCceEE--EEecCCcEEEEeCCCCCCCC
Q 011798 277 VVAL--DGIFIKDVACGGVHSC--ALTSKGALYAWGGSQAGQLG 316 (477)
Q Consensus 277 i~~~--~~~~i~~i~~G~~h~~--~lt~~G~vy~wG~n~~gqLG 316 (477)
+... ...+|++|+.+....+ ++++.|.|=+|--...|+-+
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 3222 2457999999977655 46778877777655555443
No 49
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.57 E-value=79 Score=17.86 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.2
Q ss_pred eeEEEecCCcEEEEeCCC
Q 011798 73 HTAAVASDGTLFTWGANE 90 (477)
Q Consensus 73 h~~~lt~~G~vy~wG~n~ 90 (477)
|.++++.+|+||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 677888999999887653
No 50
>PLN02153 epithiospecifier protein
Probab=31.80 E-value=4.8e+02 Score=25.19 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=10.5
Q ss_pred eEEEecCCcEEEeec
Q 011798 179 VVALSECGLLQAWGY 193 (477)
Q Consensus 179 ~~~lt~~G~vy~wG~ 193 (477)
++.+..++++|.||-
T Consensus 308 ~~~v~~~~~~~~~gG 322 (341)
T PLN02153 308 TATVYGKNGLLMHGG 322 (341)
T ss_pred ccccCCcceEEEEcC
Confidence 445566678999983
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.67 E-value=47 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=11.3
Q ss_pred ceeEEEecCCcEEEEeC
Q 011798 72 EHTAAVASDGTLFTWGA 88 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~ 88 (477)
.|++++..+++||.+|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 58888887899999984
No 52
>PLN02153 epithiospecifier protein
Probab=30.81 E-value=5e+02 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=11.7
Q ss_pred ceeEEEecCCcEEEEeCC
Q 011798 72 EHTAAVASDGTLFTWGAN 89 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~n 89 (477)
.|+++. -+++||++|-.
T Consensus 25 ~h~~~~-~~~~iyv~GG~ 41 (341)
T PLN02153 25 SHGIAV-VGDKLYSFGGE 41 (341)
T ss_pred cceEEE-ECCEEEEECCc
Confidence 366554 36799999853
No 53
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=30.46 E-value=7.9e+02 Score=27.28 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred ccceeEEEecCCc-EEEEeCCCCCcCCCCCCcCc-ccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEe
Q 011798 70 GHEHTAAVASDGT-LFTWGANEFGQLGDGTEEGR-KHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVW 147 (477)
Q Consensus 70 G~~h~~~lt~~G~-vy~wG~n~~gqLG~~~~~~~-~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~w 147 (477)
++...++++.+|+ |+++|++ |-.-.-...+- ..|..+.. .+..|..|++-..+.+.-++ ++.|...
T Consensus 14 ~G~t~i~~d~~gefi~tcgsd--g~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~---------~~tv~~y 81 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSD--GDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSE---------QNTVLRY 81 (933)
T ss_pred CceEEEEEcCCCCEEEEecCC--CceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeec---------cceEEEe
Q ss_pred cCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccC
Q 011798 148 GQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPEL 227 (477)
Q Consensus 148 G~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~ 227 (477)
-.........+. .+.-+.+.+.+..+....++-.+|-.|-.--.....|- .........
T Consensus 82 ~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------------------~~lrgh~ap 140 (933)
T KOG1274|consen 82 KFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------------------KVLRGHDAP 140 (933)
T ss_pred eCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------------------eeecccCCc
Q ss_pred CceEEEecCCceEEEEeeCCcEEEE
Q 011798 228 EKITQVSCGEYHSAAVSENGEVYTW 252 (477)
Q Consensus 228 ~~i~~i~~G~~~s~~lt~~g~v~~w 252 (477)
..-++...-..+-+..+-+|.|++|
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEE
No 54
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=30.09 E-value=2.6e+02 Score=25.47 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=38.0
Q ss_pred cccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEec
Q 011798 69 CGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWG 148 (477)
Q Consensus 69 ~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG 148 (477)
.+..-.++.+.+|.||+|=.|.+|++- ..+..........|..+...++..+.. .+|.++.|-
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~----------d~~~s~~e~i~~~Ip~~~~~~~~c~~~-------~dg~ir~~n 130 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHS----------DRVCSGEESIDLGIPNGRDSSLGCVGA-------QDGRIRACN 130 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHH----------HhhhcccccceeccccccccceeEEec-------cCCceeeec
Confidence 344556778999999999998777642 112222223334455566644443321 177777776
Q ss_pred CCC
Q 011798 149 QNQ 151 (477)
Q Consensus 149 ~~~ 151 (477)
...
T Consensus 131 ~~p 133 (238)
T KOG2444|consen 131 IKP 133 (238)
T ss_pred ccc
Confidence 543
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.55 E-value=5.2e+02 Score=25.24 Aligned_cols=17 Identities=12% Similarity=-0.236 Sum_probs=13.1
Q ss_pred ceEEEEecCCcEEEEeC
Q 011798 293 VHSCALTSKGALYAWGG 309 (477)
Q Consensus 293 ~h~~~lt~~G~vy~wG~ 309 (477)
.+.++.+.+|.||++-.
T Consensus 321 ~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 46667788999999864
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.85 E-value=7.9e+02 Score=26.76 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=75.2
Q ss_pred ccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEe--cCCcEEEEeCCCCCc
Q 011798 16 NIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVA--SDGTLFTWGANEFGQ 93 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt--~~G~vy~wG~n~~gq 93 (477)
++...|.-.++|...-|||+.=.=....-+-++- +-..++..++-...-.++.| +||+|-.|-..+.--
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeecc---------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 7788899999999999998853211110011100 02234555555555444433 578888886543100
Q ss_pred CCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEe
Q 011798 94 LGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVS 173 (477)
Q Consensus 94 LG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs 173 (477)
.-+.-++-.....++++......+..+- ||.|-+|-..+.-++..... +.++ +.+
T Consensus 385 ----------~vTFteHts~Vt~v~f~~~g~~llssSL---------DGtVRAwDlkRYrNfRTft~-----P~p~-Qfs 439 (893)
T KOG0291|consen 385 ----------FVTFTEHTSGVTAVQFTARGNVLLSSSL---------DGTVRAWDLKRYRNFRTFTS-----PEPI-QFS 439 (893)
T ss_pred ----------EEEeccCCCceEEEEEEecCCEEEEeec---------CCeEEeeeecccceeeeecC-----CCce-eee
Confidence 1111122334445666666666666655 99999999877665533221 1111 222
Q ss_pred cCCceeEEEecCCcEEEeec
Q 011798 174 CGSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 174 ~G~~~~~~lt~~G~vy~wG~ 193 (477)
+++++..|.|.+-|.
T Consensus 440 -----cvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 440 -----CVAVDPSGELVCAGA 454 (893)
T ss_pred -----EEEEcCCCCEEEeec
Confidence 455566677666664
No 57
>PHA02790 Kelch-like protein; Provisional
Probab=27.48 E-value=4e+02 Score=27.36 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred ceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCC
Q 011798 124 HCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGI 203 (477)
Q Consensus 124 ~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~ 203 (477)
.++++.. ++++|+-|.......-.........-..+..+-....+..+..-+|+||..|
T Consensus 311 ~~~~v~~----------~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviG----------- 369 (480)
T PHA02790 311 YASGVPA----------NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIG----------- 369 (480)
T ss_pred cceEEEE----------CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEec-----------
Q ss_pred CCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCc
Q 011798 204 TCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI 283 (477)
Q Consensus 204 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~ 283 (477)
...........+.+....-..+...........+..-+|++|+.|-. ..+..+...
T Consensus 370 -----G~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-------------------~e~ydp~~~ 425 (480)
T PHA02790 370 -----GHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-------------------AEFYCESSN 425 (480)
T ss_pred -----CcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-------------------eEEecCCCC
Q ss_pred eEEEEE---ccCceEEEEecCCcEEEEe
Q 011798 284 FIKDVA---CGGVHSCALTSKGALYAWG 308 (477)
Q Consensus 284 ~i~~i~---~G~~h~~~lt~~G~vy~wG 308 (477)
....++ ....+.-+..-+|+||..|
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEEC
No 58
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.32 E-value=5e+02 Score=24.01 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=44.6
Q ss_pred ccCCCCcEEEEeCCCCCCCCCCCCC----CccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCC
Q 011798 16 NIPAKSAIYVWGYNHSGQTGRKGRE----RQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEF 91 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqLG~~~~~----~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~ 91 (477)
++...++.++-|++ +|++-.-... .+...|...+... .-.....|-.++.-+.|-+ .-.||+||.|=.|..
T Consensus 17 a~sp~~~~l~agn~-~G~iav~sl~sl~s~sa~~~gk~~iv~---eqahdgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNL-FGDIAVLSLKSLDSGSAEPPGKLKIVP---EQAHDGPIYYLAFHDDFLL-SGGDGLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecC-CCeEEEEEehhhhccccCCCCCcceee---ccccCCCeeeeeeehhhee-eccCceEEEeeehhh
Confidence 55666676666644 6665532211 1111222211100 0113455666776655543 445799999999876
Q ss_pred Cc-CCCCCCcCcccccccc
Q 011798 92 GQ-LGDGTEEGRKHPEKVK 109 (477)
Q Consensus 92 gq-LG~~~~~~~~~p~~v~ 109 (477)
-. ++....-....|.++.
T Consensus 92 ~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVD 110 (325)
T ss_pred hhhccchhhhhhcCccccC
Confidence 55 4433322344455543
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=26.80 E-value=6.8e+02 Score=25.38 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=42.2
Q ss_pred ceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCC
Q 011798 177 VHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGS 256 (477)
Q Consensus 177 ~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~ 256 (477)
.+.++...+|+||.|-.+.. ..+. +.++=-|=...+++++-+|..++.|.+.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~---------------~~~~-------------rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQN---------------SCLH-------------RFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred cEEEEEcCCceEEEEecCCc---------------ceEE-------------EEeecCccceeeeeecCCCceEEeccCc
Confidence 55666677999999964432 1111 1222222245567888899999999732
Q ss_pred CCCCCCCCCCCCCccccceeeeecCC
Q 011798 257 VGQLGHCSLQSGDKELLPRRVVALDG 282 (477)
Q Consensus 257 ~gqlg~~~~~~~~~~~~p~~i~~~~~ 282 (477)
|-...-+..+......|+.++.+.+
T Consensus 409 -GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 409 -GIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred -ceEEEeccchhhccCCCCchhhhhh
Confidence 2222222222233445766666654
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=25.53 E-value=2.3e+02 Score=27.98 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=43.9
Q ss_pred cEEEEecCCce---eEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEe
Q 011798 168 IICQVSCGSVH---VVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVS 244 (477)
Q Consensus 168 ~i~~vs~G~~~---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt 244 (477)
.++.+.++.++ .+++-.+|++..|-.+..-.+ + .....+.+|.--....+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l---------------~---------~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKAL---------------K---------QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeeeEc---------------c---------CCCceeeEEEEECCEEEEEc
Confidence 45557778776 777888999998963322111 0 12356888888778888999
Q ss_pred eCCcEEEEe
Q 011798 245 ENGEVYTWG 253 (477)
Q Consensus 245 ~~g~v~~wG 253 (477)
..|+||++-
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 999999986
No 61
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.29 E-value=1.7e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.394 Sum_probs=38.0
Q ss_pred EeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceE--EEEecCCcEEEEeC
Q 011798 243 VSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHS--CALTSKGALYAWGG 309 (477)
Q Consensus 243 lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~--~~lt~~G~vy~wG~ 309 (477)
..+.|+||+|-... .++...++......+..|.+.+....-+ ++.+++|.||.|-.
T Consensus 325 gnq~g~v~vwdL~~-----------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDN-----------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCC-----------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 35689999996522 2223456666666777888887765544 45678999999964
No 62
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.27 E-value=1.1e+02 Score=22.74 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCcEEEEecC-CceeEEEecCCcEEEeecCCCCCC
Q 011798 166 NTIICQVSCG-SVHVVALSECGLLQAWGYNEYGQL 199 (477)
Q Consensus 166 ~~~i~~vs~G-~~~~~~lt~~G~vy~wG~n~~gql 199 (477)
...=..|+|. ..-.++|++||.+|+-+--..|++
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 3445789999 888999999999999986556554
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.23 E-value=7e+02 Score=24.98 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCCcEEEEecCCceeEEEe--cCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEE
Q 011798 165 PNTIICQVSCGSVHVVALS--ECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAA 242 (477)
Q Consensus 165 ~~~~i~~vs~G~~~~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~ 242 (477)
...+|.+++-+.+.-++|. .+.++..|-.- .++++..+. ......--|.+..+|.+.+++
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~---------------e~~lv~kY~---Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLE---------------ENKLVRKYF---GHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecc---------------hhhHHHHhh---cccccceEEEeccCCCCcceE
Confidence 3456777776655544443 46778888532 122222111 111122347777777775655
Q ss_pred E--eeCCcEEEEeC
Q 011798 243 V--SENGEVYTWGL 254 (477)
Q Consensus 243 l--t~~g~v~~wG~ 254 (477)
. ++|++||.|-.
T Consensus 456 aSGSED~kvyIWhr 469 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHR 469 (519)
T ss_pred EecCCCceEEEEEc
Confidence 5 58999999975
No 64
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=25.16 E-value=5.9e+02 Score=24.12 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecC---CceEEEEeeCCcEEE
Q 011798 175 GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCG---EYHSAAVSENGEVYT 251 (477)
Q Consensus 175 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G---~~~s~~lt~~g~v~~ 251 (477)
+.-|.++...||.||.-+. ..+.+|+-+. ...+++.+..| .-|.+++..+|..|.
T Consensus 62 ~ap~dvapapdG~VWft~q-g~gaiGhLdP---------------------~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi 119 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQ-GTGAIGHLDP---------------------ATGEVETYPLGSGASPHGIVVGPDGSAWI 119 (353)
T ss_pred CCccccccCCCCceEEecC-ccccceecCC---------------------CCCceEEEecCCCCCCceEEECCCCCeeE
Confidence 4567788899999997643 2233443221 11234444333 568899999999998
Q ss_pred EeCC-CCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCC-CCCC
Q 011798 252 WGLG-SVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQ-AGQL 315 (477)
Q Consensus 252 wG~n-~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~-~gqL 315 (477)
.-.. ..+.++... ......|.. .+-+-+.-.+.+++..|.||.-|.+- +|.|
T Consensus 120 td~~~aI~R~dpkt---~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrL 173 (353)
T COG4257 120 TDTGLAIGRLDPKT---LEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRL 173 (353)
T ss_pred ecCcceeEEecCcc---cceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceec
Confidence 7543 122222111 111111111 23334556788899999999999743 4443
No 65
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.55 E-value=9.5e+02 Score=26.28 Aligned_cols=230 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred ecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCee-eeccccccccCccCCceEEEecC-CceEEEEeeCCcEE
Q 011798 173 SCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRV-IKGYAKFLDEAPELEKITQVSCG-EYHSAAVSENGEVY 250 (477)
Q Consensus 173 s~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~i~~i~~G-~~~s~~lt~~g~v~ 250 (477)
+.+....++...++.+|+|=.+...-+-..-.......... -..+..+....+..-.|.+|... ..+-++|...-.|+
T Consensus 29 ~~~~~rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~ 108 (717)
T PF10168_consen 29 SERHTRNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVV 108 (717)
T ss_pred ccccceeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEE
Q ss_pred E------EeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEE-----EccCceEEEEecCCc--------------EE
Q 011798 251 T------WGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDV-----ACGGVHSCALTSKGA--------------LY 305 (477)
Q Consensus 251 ~------wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i-----~~G~~h~~~lt~~G~--------------vy 305 (477)
+ ||.+.+-+.|.....-.....-......-....|.++ +....|-++||+|+. ++
T Consensus 109 V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 109 VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEE
Q ss_pred EEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeC----CceeEEEEeCCcEEEEeCCC---CCCcc
Q 011798 306 AWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACG----HSHTLVYMRDGRIHGWGYNS---YGQAA 378 (477)
Q Consensus 306 ~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G----~~h~~~l~~~g~v~~wG~n~---~gqLG 378 (477)
.|.... ..-+.......+...-.+....|...|....+........+ .+-.++|..+|+||..=.+- ...++
T Consensus 189 ~~~~~~-~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~~~~~~~~~~~~~~~p~~vL~~ng~v~~~~~~l~~~~~~~~ 267 (717)
T PF10168_consen 189 SLSPGE-KSSSLSSRGRSFLASLGETAVDFDFGPLDTSPKTLTGQKSKQEKIEWPIFVLRENGDVYLLYTSLQDENSNLP 267 (717)
T ss_pred EcccCc-ccccccCCCccccccchheeeecccccccccccccccccCCCCceeccEEEEecCCCEEEEEEecccCccccc
Q ss_pred CCCCccccCCeecccccCceEEEEe
Q 011798 379 NEKSTYAWYPSPVDWCVGEVRKLAA 403 (477)
Q Consensus 379 ~~~~~~~~~p~~v~~~~~~i~~v~~ 403 (477)
.-......+|..-+......-+|.|
T Consensus 268 ~~~gpl~~~p~~~dnyg~d~c~i~~ 292 (717)
T PF10168_consen 268 KLQGPLPMQPPADDNYGLDACSILC 292 (717)
T ss_pred eecCceecCCCCcccCCCceeeEEE
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=24.41 E-value=7.5e+02 Score=25.10 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=27.4
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCC
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNE 195 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~ 195 (477)
+|+||+|-.+....+.+ .++=-|=...++++..+|..++.|++.
T Consensus 365 ~GeV~v~nl~~~~~~~r-----------f~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHR-----------FVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred CceEEEEecCCcceEEE-----------EeecCccceeeeeecCCCceEEeccCc
Confidence 88999998776532221 222222234567788888888998753
No 67
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=24.31 E-value=1.1e+02 Score=22.79 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCcEEEEEcc-cceeEEEecCCcEEEEeCCCCCcC
Q 011798 60 ANSRWLDIACG-HEHTAAVASDGTLFTWGANEFGQL 94 (477)
Q Consensus 60 ~~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gqL 94 (477)
....=..|+|. ....++|+.||.+|.-+--..|++
T Consensus 14 ~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 14 LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45566789999 888999999999999887545553
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.00 E-value=5.8e+02 Score=25.65 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=45.5
Q ss_pred ceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccc--cccceEEEeeCCceeEEEeccCCCCCccccCcEEEecC
Q 011798 72 EHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL--QSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQ 149 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~--~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~ 149 (477)
.+++++-.||-+|+-|.-+ |++-.=. ...+..+..| ...+|+.|+.+.+--...+.- .|+.|.+|-.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwd---lks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-------dd~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWD---LKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-------DDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEE---cCCccccccCCCCCCceeEEEeccCceEEEEEe-------cCCeEEEEEe
Confidence 6788888899888888642 5543222 2223333333 335788888776644443331 1778999997
Q ss_pred CCCCCCCce
Q 011798 150 NQGSNFPRL 158 (477)
Q Consensus 150 ~~~~~~~~~ 158 (477)
....+++..
T Consensus 419 RKl~n~kt~ 427 (506)
T KOG0289|consen 419 RKLKNFKTI 427 (506)
T ss_pred hhhccccee
Confidence 766555443
No 69
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=23.61 E-value=51 Score=24.15 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.9
Q ss_pred CcE-EEEeCCCCCC
Q 011798 364 GRI-HGWGYNSYGQ 376 (477)
Q Consensus 364 g~v-~~wG~n~~gq 376 (477)
=.+ |+||+|...+
T Consensus 56 Psv~waWGSNKnk~ 69 (84)
T PF07312_consen 56 PSVYWAWGSNKNKQ 69 (84)
T ss_pred cceeeeeccCCCCC
Confidence 346 9999998664
No 70
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.97 E-value=8.5e+02 Score=24.41 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=38.0
Q ss_pred CcEEEEEc-ccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccc--cccccceEEEeeCCceeEEEeccCCCCCc
Q 011798 62 SRWLDIAC-GHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVK--QLQSEFVKSISCGAHCTAAIAEPRENDGT 138 (477)
Q Consensus 62 ~~i~~i~~-G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~--~~~~~~i~~i~~g~~~s~~l~~~~~~~~~ 138 (477)
.+|+.+.- -.++-++|+++|.++..- -.|.. ....+..+. .....++-.+..+..-.++|+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~------- 145 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG------- 145 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECC-------
Confidence 56666664 345778899999988763 33332 001111111 1112223333445455677776
Q ss_pred cccCcEEEecCC
Q 011798 139 ISTSRLWVWGQN 150 (477)
Q Consensus 139 ~~~g~v~~wG~~ 150 (477)
++++|.--..
T Consensus 146 --~~~~~~v~n~ 155 (410)
T PF04841_consen 146 --NNRFYVVNNI 155 (410)
T ss_pred --CCeEEEEeCc
Confidence 7778776433
No 71
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=20.60 E-value=91 Score=18.51 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.4
Q ss_pred ccCCCCcEEEEeCCCCCCC
Q 011798 16 NIPAKSAIYVWGYNHSGQT 34 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqL 34 (477)
..+-+=.+-+||.|..|.+
T Consensus 13 ~FTfSlslVVWGRnG~g~~ 31 (33)
T PRK02529 13 IFTFSIAMVVWGRNGDGSI 31 (33)
T ss_pred HhheeeEEEEEecCCcccc
Confidence 3444556889999987754
Done!