Query 011798
Match_columns 477
No_of_seqs 396 out of 2448
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 2.8E-68 9.7E-73 530.3 32.0 370 5-414 5-387 (389)
2 1a12_A RCC1, regulator of chro 100.0 5.4E-67 1.8E-71 525.7 39.9 371 7-416 14-411 (413)
3 3mvd_K Regulator of chromosome 100.0 1.1E-66 3.6E-71 525.5 42.0 370 3-415 26-419 (423)
4 3of7_A Regulator of chromosome 100.0 7.4E-66 2.5E-70 525.4 41.1 378 12-414 20-450 (473)
5 4d9s_A UVB-resistance protein 100.0 4.9E-66 1.7E-70 516.8 36.7 353 2-394 17-378 (406)
6 4d9s_A UVB-resistance protein 100.0 1.2E-62 4E-67 492.4 37.2 342 60-435 14-365 (406)
7 3mvd_K Regulator of chromosome 100.0 1E-58 3.5E-63 467.3 32.3 339 60-434 22-381 (423)
8 3kci_A Probable E3 ubiquitin-p 100.0 3.5E-59 1.2E-63 464.8 26.8 336 65-434 4-352 (389)
9 1a12_A RCC1, regulator of chro 100.0 3.7E-58 1.3E-62 461.4 29.6 335 66-434 12-372 (413)
10 3of7_A Regulator of chromosome 100.0 2.3E-56 8E-61 455.3 27.6 340 61-433 9-411 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 4.9E-54 1.7E-58 407.3 32.6 274 21-417 2-275 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 4.2E-49 1.4E-53 373.4 27.3 252 2-367 25-276 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.4 0.0071 2.4E-07 53.4 7.3 72 167-260 309-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.2 0.025 8.5E-07 50.0 9.4 70 3-94 311-380 (400)
15 1p22_A F-BOX/WD-repeat protein 94.7 3.3 0.00011 40.2 25.7 192 60-309 172-363 (435)
16 1k3i_A Galactose oxidase precu 94.5 4 0.00014 42.4 21.3 73 237-314 457-534 (656)
17 1p22_A F-BOX/WD-repeat protein 93.4 6 0.00021 38.2 28.5 231 61-371 133-363 (435)
18 2ovr_B FBW7, F-BOX/WD repeat p 92.4 8.3 0.00028 37.3 28.9 232 61-372 159-390 (445)
19 1k3i_A Galactose oxidase precu 92.0 4.8 0.00016 41.8 17.0 49 141-193 253-305 (656)
20 2zwa_A Leucine carboxyl methyl 88.9 6.4 0.00022 41.2 14.7 19 236-254 597-615 (695)
21 2ovr_B FBW7, F-BOX/WD repeat p 88.0 20 0.00067 34.5 27.1 226 64-372 122-347 (445)
22 2zwa_A Leucine carboxyl methyl 87.8 28 0.00097 36.2 21.5 52 141-193 397-459 (695)
23 2aq5_A Coronin-1A; WD40 repeat 84.2 28 0.00097 32.8 20.0 119 61-193 81-205 (402)
24 2xn4_A Kelch-like protein 2; s 81.5 10 0.00034 34.5 10.7 16 72-88 54-69 (302)
25 1gxr_A ESG1, transducin-like e 78.5 37 0.0013 30.5 29.4 271 15-373 15-296 (337)
26 1zgk_A Kelch-like ECH-associat 78.4 6.4 0.00022 36.1 8.3 14 16-29 20-33 (308)
27 4aez_A CDC20, WD repeat-contai 75.4 55 0.0019 30.8 27.0 150 64-255 96-247 (401)
28 3odt_A Protein DOA1; ubiquitin 74.0 47 0.0016 29.4 20.7 187 60-311 103-296 (313)
29 2vpj_A Kelch-like protein 12; 74.0 26 0.00088 31.6 11.1 52 141-193 159-214 (301)
30 4g56_B MGC81050 protein; prote 69.9 70 0.0024 29.6 28.3 68 114-192 140-210 (357)
31 3ii7_A Kelch-like protein 7; p 67.6 46 0.0016 30.0 11.3 17 72-89 48-64 (306)
32 2vpj_A Kelch-like protein 12; 67.3 70 0.0024 28.6 13.9 52 141-193 112-167 (301)
33 3k26_A Polycomb protein EED; W 65.9 78 0.0027 28.7 22.5 111 62-194 70-191 (366)
34 3mmy_A MRNA export factor; mRN 65.8 78 0.0027 28.6 19.3 149 113-310 39-198 (368)
35 4a11_B DNA excision repair pro 65.5 85 0.0029 28.9 23.9 217 60-311 42-276 (408)
36 1gxr_A ESG1, transducin-like e 59.9 94 0.0032 27.6 28.5 200 67-310 7-213 (337)
37 3jrp_A Fusion protein of prote 59.9 1E+02 0.0035 28.0 24.5 111 61-194 11-133 (379)
38 3sfz_A APAF-1, apoptotic pepti 58.9 2.2E+02 0.0074 31.4 23.4 27 229-255 1129-1157(1249)
39 4asc_A Kelch repeat and BTB do 56.9 62 0.0021 29.3 10.1 16 177-193 141-156 (315)
40 1zgk_A Kelch-like ECH-associat 53.6 40 0.0014 30.5 8.1 16 72-88 114-129 (308)
41 4g56_B MGC81050 protein; prote 52.9 1.4E+02 0.0048 27.4 24.8 93 141-254 114-211 (357)
42 4gqb_B Methylosome protein 50; 50.6 1.5E+02 0.0052 27.2 27.1 157 16-192 37-198 (344)
43 1pgu_A Actin interacting prote 49.5 2E+02 0.0069 28.3 20.1 68 228-310 161-237 (615)
44 1xip_A Nucleoporin NUP159; bet 48.7 1.3E+02 0.0044 28.6 11.0 63 116-192 90-152 (388)
45 3mmy_A MRNA export factor; mRN 48.5 1.5E+02 0.0052 26.6 22.8 150 60-255 38-198 (368)
46 3ii7_A Kelch-like protein 7; p 48.2 1.5E+02 0.0051 26.4 13.2 17 292-309 192-208 (306)
47 3jro_A Fusion protein of prote 45.4 2.8E+02 0.0095 28.7 22.8 111 61-194 9-131 (753)
48 4aez_A CDC20, WD repeat-contai 45.2 1.9E+02 0.0066 26.8 21.1 112 60-193 175-291 (401)
49 1k8k_C P40, ARP2/3 complex 41 42.8 1.9E+02 0.0065 26.0 26.2 113 62-193 53-171 (372)
50 3jro_A Fusion protein of prote 41.7 3.1E+02 0.011 28.3 21.4 158 61-256 53-238 (753)
51 3jrp_A Fusion protein of prote 40.3 2.1E+02 0.0071 25.8 22.3 200 61-310 55-286 (379)
52 3v7d_B Cell division control p 39.9 2.5E+02 0.0084 26.5 28.1 245 64-369 125-377 (464)
53 1pgu_A Actin interacting prote 38.7 2.9E+02 0.0099 27.0 26.8 59 114-192 340-399 (615)
54 2woz_A Kelch repeat and BTB do 35.5 1E+02 0.0034 27.9 7.8 16 73-88 49-64 (318)
55 1r5m_A SIR4-interacting protei 34.8 2.7E+02 0.0092 25.5 22.2 286 7-369 116-421 (425)
56 3p6j_A De novo designed beta-t 34.3 1.8E+02 0.006 23.2 12.2 104 166-306 29-138 (142)
57 4asc_A Kelch repeat and BTB do 34.2 2.5E+02 0.0086 25.0 11.5 16 72-88 91-106 (315)
58 3no2_A Uncharacterized protein 33.3 2.5E+02 0.0086 24.7 23.3 27 167-193 88-116 (276)
59 3k26_A Polycomb protein EED; W 32.7 2.7E+02 0.0091 24.8 20.0 156 61-255 18-191 (366)
60 4gqb_B Methylosome protein 50; 30.9 3.1E+02 0.011 25.0 25.0 111 115-254 84-199 (344)
61 4a11_B DNA excision repair pro 30.2 3.1E+02 0.011 24.8 29.3 166 60-256 98-276 (408)
62 3mkq_A Coatomer beta'-subunit; 28.0 5E+02 0.017 26.5 25.1 110 62-193 56-170 (814)
63 3odt_A Protein DOA1; ubiquitin 27.7 3E+02 0.01 23.8 28.4 226 63-372 61-295 (313)
64 1xip_A Nucleoporin NUP159; bet 25.6 4.3E+02 0.015 24.9 13.0 65 230-310 90-154 (388)
65 1sq9_A Antiviral protein SKI8; 23.6 4.1E+02 0.014 24.0 25.7 120 60-194 15-156 (397)
66 2xyi_A Probable histone-bindin 23.5 4.6E+02 0.016 24.5 25.2 139 141-311 203-353 (430)
67 2xn4_A Kelch-like protein 2; s 23.4 3.8E+02 0.013 23.5 13.1 52 141-193 61-116 (302)
68 3f3f_A Nucleoporin SEH1; struc 22.1 3.9E+02 0.013 23.2 21.2 228 103-369 1-245 (351)
69 2pm9_A Protein WEB1, protein t 21.3 4.7E+02 0.016 23.8 25.9 54 141-194 88-144 (416)
70 2aq5_A Coronin-1A; WD40 repeat 20.9 4.8E+02 0.017 23.8 23.6 152 67-254 40-205 (402)
71 3no0_A DNA gyrase subunit A; D 20.4 4.5E+02 0.015 23.3 20.7 221 60-320 22-255 (276)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-68 Score=530.30 Aligned_cols=370 Identities=24% Similarity=0.448 Sum_probs=296.0
Q ss_pred cccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEE
Q 011798 5 EIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLF 84 (477)
Q Consensus 5 ~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy 84 (477)
+++. ..+.+++|+++|+||+||+|..||||.+.. .....|.+++.. ...+|++|+||..|+++|+++|+||
T Consensus 5 ~~~~-~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~-------~~~~i~~i~~G~~~~~~l~~~G~v~ 75 (389)
T 3kci_A 5 HHHS-SGRENLYFQGSGTIYGWGHNHRGQLGGIEG-AKVKVPTPCEAL-------ATLRPVQLIGGEQTLFAVTADGKLY 75 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCSC-SEEEEEEECHHH-------HHTCEEEEEEETTEEEEEETTSCEE
T ss_pred cccc-CcccceeECCCCeEEEeeCCCCccCCCCcC-ccccCCEecccc-------cCCceEEEEeCCCeEEEEcCCCcEE
Confidence 3444 446677999999999999999999997543 344566655421 4568999999999999999999999
Q ss_pred EEeCCCCCcCCCCCCcCccccccccccccc--ceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCc-----
Q 011798 85 TWGANEFGQLGDGTEEGRKHPEKVKQLQSE--FVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPR----- 157 (477)
Q Consensus 85 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~--~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~----- 157 (477)
+||.|.+||||.+.......|++++.+... ++++|+||..|+++|++ +|+||+||.+..+|+..
T Consensus 76 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~---------~G~v~~wG~n~~GqLG~g~~~~ 146 (389)
T 3kci_A 76 ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS---------EGEVYSWGEAEDGKLGHGNRSP 146 (389)
T ss_dssp EEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEET---------TSCEEEEECCGGGTTCSSSCCC
T ss_pred EEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcC---------CCCEEEEeCCCCCcCCCCCCcc
Confidence 999999999999998888899999887765 44788999999999999 99999999998777632
Q ss_pred -eeec--CCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEe
Q 011798 158 -LFWG--AFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVS 234 (477)
Q Consensus 158 -~~~~--~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~ 234 (477)
..+. ......+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+..+ ...+|++|+
T Consensus 147 ~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~--------~~~~v~~ia 217 (389)
T 3kci_A 147 CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED-QLKPKLVEAL--------QGHRVVDIA 217 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGG--------TTSCEEEEE
T ss_pred CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc-cccceEeccc--------CCCeEEEEE
Confidence 1111 122355899999999999999999999999999999999987633 2334444322 235899999
Q ss_pred cCC--ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCC
Q 011798 235 CGE--YHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312 (477)
Q Consensus 235 ~G~--~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~ 312 (477)
||. .|+++|+++|+||+||.|.+||||.+.. .....|.++..+.+.+|++|+||..|++||+++|+||+||.|.+
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---CCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---CCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence 995 8999999999999999999999999864 34567899988888899999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecc
Q 011798 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVD 392 (477)
Q Consensus 313 gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~ 392 (477)
||||.+.......+. .++. ....+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++|+
T Consensus 295 GqLG~g~~~~~~~P~---------~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 364 (389)
T 3kci_A 295 HRLGHGSDDHVRRPR---------QVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA 364 (389)
T ss_dssp GTTCSSSCCCEEEEE---------ECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CCCCCCCCccccCCe---------Eecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEec
Confidence 999998755432111 1110 123579999999999999999999999999999999999999999999998
Q ss_pred cccC-ceEEEEecCCceEEEecC
Q 011798 393 WCVG-EVRKLAAGGGHSAVLADA 414 (477)
Q Consensus 393 ~~~~-~i~~v~~G~~~t~~l~~~ 414 (477)
.+.+ +|++|+||.+||++|+++
T Consensus 365 ~~~~~~v~~va~G~~ht~al~~~ 387 (389)
T 3kci_A 365 ALQGKKVNRVACGSAHTLAWSTS 387 (389)
T ss_dssp GGTTSCCCEEEEETTEEEEECC-
T ss_pred ccCCCCEEEEEecCCcEEEEecC
Confidence 7654 899999999999999976
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.4e-67 Score=525.67 Aligned_cols=371 Identities=25% Similarity=0.413 Sum_probs=301.1
Q ss_pred cCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEE
Q 011798 7 IGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTW 86 (477)
Q Consensus 7 ~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~w 86 (477)
+.+..|+ ++|+++|+||+||.|..||||.+........|..++ ...+|++|+||..|+++|+++|+||+|
T Consensus 14 ~~~~~h~-~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~---------~~~~i~~va~G~~hs~~l~~~G~v~~w 83 (413)
T 1a12_A 14 KVKVSHR-SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS---------IPEDVVQAEAGGMHTVCLSKSGQVYSF 83 (413)
T ss_dssp CCCCCCT-TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEEC---------CSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred hhccccc-eeecCCCcEEEEECCCCCcCCCCCCccccccceEcc---------CCCCeEEEEeCCCeEEEEcCCCCEEEE
Confidence 3344444 599999999999999999999987665566787776 347899999999999999999999999
Q ss_pred eCCCCCcCCCCCCc--CcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecC--CCCCCCC------
Q 011798 87 GANEFGQLGDGTEE--GRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQ--NQGSNFP------ 156 (477)
Q Consensus 87 G~n~~gqLG~~~~~--~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~--~~~~~~~------ 156 (477)
|.|.+||||.+... ....|+++. + ..+|++|+||..|+++|++ +|+||+||. +..+++.
T Consensus 84 G~n~~GqLG~~~~~~~~~~~P~~v~-l-~~~i~~va~G~~hs~alt~---------~G~v~~wG~~~n~~GqlG~~~~~~ 152 (413)
T 1a12_A 84 GCNDEGALGRDTSVEGSEMVPGKVE-L-QEKVVQVSAGDSHTAALTD---------DGRVFLWGSFRDNNGVIGLLEPMK 152 (413)
T ss_dssp ECCTTSTTCSCCCSTTGGGSCEECC-C-CSCEEEEEECSSEEEEEET---------TSCEEEEECEEETTEEEESSBBTB
T ss_pred ECCCCCCCCCCCCCCccccCCeEec-C-CCcEEEEecCCCeEEEEcC---------CCcEEEeeCCcCCCCccCcCCccc
Confidence 99999999998863 456788774 3 3489999999999999999 999999998 5554431
Q ss_pred -ceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCC----------CCCeeeeccccccccCc
Q 011798 157 -RLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGL----------QGPRVIKGYAKFLDEAP 225 (477)
Q Consensus 157 -~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~----------~~~~~i~~~~~~~~~~~ 225 (477)
...+..+....+|++|+||..|+++|+++|+||+||.|.+||||.+...... ..|+.+.... ....
T Consensus 153 ~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~---~g~~ 229 (413)
T 1a12_A 153 KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS---RGSR 229 (413)
T ss_dssp CEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBC---SSCC
T ss_pred cccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeecc---cccc
Confidence 1122233456789999999999999999999999999999999987542211 1232221100 0001
Q ss_pred cCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCC--ceEEEEEccCceEEEEecCCc
Q 011798 226 ELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDG--IFIKDVACGGVHSCALTSKGA 303 (477)
Q Consensus 226 ~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~h~~~lt~~G~ 303 (477)
...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+ .+|++|+||..|+++|+++|+
T Consensus 230 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~---~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~ 306 (413)
T 1a12_A 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE---SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGK 306 (413)
T ss_dssp SBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS---CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSC
T ss_pred CCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC---cccccEEchhccCCCceEEEEecccceEEEEeCCCC
Confidence 33689999999999999999999999999999999997643 3467888888876 679999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceee-cCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCC
Q 011798 304 LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKS 382 (477)
Q Consensus 304 vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~ 382 (477)
||+||.|.+||||.+..... ...|..+ ...+|++|+||.+|+++|+++|+||+||.|.+||||.++.
T Consensus 307 v~~wG~n~~GqLG~g~~~~~------------~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~ 374 (413)
T 1a12_A 307 AYSLGRAEYGRLGLGEGAEE------------KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 374 (413)
T ss_dssp EEEEECCGGGTTCSCTTCCC------------EEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC
T ss_pred EEEeeCCCCCccCCCCCCcc------------ccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC
Confidence 99999999999999843322 1112221 1138999999999999999999999999999999999998
Q ss_pred ccccCCeecccc--c-CceEEEEecCCceEEEecCCC
Q 011798 383 TYAWYPSPVDWC--V-GEVRKLAAGGGHSAVLADACS 416 (477)
Q Consensus 383 ~~~~~p~~v~~~--~-~~i~~v~~G~~~t~~l~~~~~ 416 (477)
.+...|++|+.. . .+|++|+||.+|+++|+++++
T Consensus 375 ~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 375 EDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp SCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred CCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCC
Confidence 888999998742 2 379999999999999999864
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-66 Score=525.54 Aligned_cols=370 Identities=22% Similarity=0.302 Sum_probs=302.8
Q ss_pred cccccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCc
Q 011798 3 INEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82 (477)
Q Consensus 3 i~~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~ 82 (477)
+..|.++..+++ +++++|+||+||.|..||||.+.+......|.+++ ...+|++|+||..|+++|+++|+
T Consensus 26 ~~~ia~g~~~~~-~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~---------~l~~v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 26 RARIAFHLELPK-RRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA---------GIPDAVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp ---CCCCCCCCC-CCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC---------SCSSEEEEEECSSEEEEEETTSC
T ss_pred eeEEecCCccce-eecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc---------CCCCceEEeeCCCeEEEEeCCCe
Confidence 456778887777 99999999999999999999987666666787776 34569999999999999999999
Q ss_pred EEEEeCCCCCcCCCCCCcC--cccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecC--CCCCCCC--
Q 011798 83 LFTWGANEFGQLGDGTEEG--RKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQ--NQGSNFP-- 156 (477)
Q Consensus 83 vy~wG~n~~gqLG~~~~~~--~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~--~~~~~~~-- 156 (477)
||+||.|.+||||.+.... ...|.++.. ..+|++|+||..|+++|++ +|+||+||. +..+++.
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~---------~G~v~~wG~~~n~~GqlG~~ 164 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLE---------DGRVFAWGSFRDSHGNMGLT 164 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEET---------TSCEEEEECEECSSSEEESB
T ss_pred EEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeC---------CCeEEEEeCCCCCCCCcCcC
Confidence 9999999999999998764 567777763 3479999999999999999 999999998 7666642
Q ss_pred ----ceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCC----------CCCCCeeeeccccccc
Q 011798 157 ----RLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCE----------GLQGPRVIKGYAKFLD 222 (477)
Q Consensus 157 ----~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~----------~~~~~~~i~~~~~~~~ 222 (477)
...+.......+|++|+||..|+++|+++|+||+||.|.+||||.+.... ....|..+..
T Consensus 165 ~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~------ 238 (423)
T 3mvd_K 165 IDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII------ 238 (423)
T ss_dssp TTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC------
T ss_pred CCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee------
Confidence 22333445677899999999999999999999999999999999976532 2223443331
Q ss_pred cCccCCceEEEecCCceEEEE-eeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecC
Q 011798 223 EAPELEKITQVSCGEYHSAAV-SENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSK 301 (477)
Q Consensus 223 ~~~~~~~i~~i~~G~~~s~~l-t~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~ 301 (477)
....+|++|+||.+|++++ +++|+||+||.|.+||||.+... ......|.++. ..+|++|+||..|+++|+++
T Consensus 239 --~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~-~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~ 312 (423)
T 3mvd_K 239 --TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKG-KEFALTPIKTE---LKDIRHIAGGQHHTVILTTD 312 (423)
T ss_dssp --TTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTT-CSEEEEEEEEC---CCSEEEEEECSSEEEEEETT
T ss_pred --cCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCC-CceeeeeEEcC---CCCeEEEEcccCeEEEEeCC
Confidence 2346799999999999999 69999999999999999985533 23344566654 34599999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCC
Q 011798 302 GALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEK 381 (477)
Q Consensus 302 G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~ 381 (477)
|+||+||.|.+||||.+....... .+..++ ....+|++|+||.+|+++|+++|+||+||.|.+||||.++
T Consensus 313 G~v~~wG~n~~GqLG~g~~~~~~~--------~p~~v~--~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 382 (423)
T 3mvd_K 313 LKCSVVGRPEYGRLGLGDVKDVVE--------KPTIVK--KLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD 382 (423)
T ss_dssp CCEEEEECCGGGTTCSSSCCSCEE--------EEEECT--TCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS
T ss_pred CcEEEEECCCCCCCCCCCcccccc--------CceEec--cCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC
Confidence 999999999999999987554210 011111 1223799999999999999999999999999999999999
Q ss_pred CccccCCeeccc--c-cCceEEEEecCCceEEEecCC
Q 011798 382 STYAWYPSPVDW--C-VGEVRKLAAGGGHSAVLADAC 415 (477)
Q Consensus 382 ~~~~~~p~~v~~--~-~~~i~~v~~G~~~t~~l~~~~ 415 (477)
..+...|++|.. + ..+|++|+||.+|+++|++++
T Consensus 383 ~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 383 GDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp SCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEccc
Confidence 999999999974 2 347999999999999999986
No 4
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-66 Score=525.40 Aligned_cols=378 Identities=20% Similarity=0.342 Sum_probs=298.8
Q ss_pred ccccccCCCCcEEEEeCCCCCCCCCCCCC--CccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCC
Q 011798 12 RPVDNIPAKSAIYVWGYNHSGQTGRKGRE--RQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGAN 89 (477)
Q Consensus 12 ~~~~~l~~~g~v~~wG~n~~GqLG~~~~~--~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 89 (477)
.+.++++.+|+||+||.|..||||.+... .....|+.++... ....+|++|+||..|+++|+++|+||+||.|
T Consensus 20 ~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~-----~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n 94 (473)
T 3of7_A 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLP-----RDEAKIISFAVGGMHTLALDEESNVWSWGCN 94 (473)
T ss_dssp HHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSC-----TTTTCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred cccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccc-----cCCCCEEEEEeCCCeEEEEecCCeEEEeECC
Confidence 45559999999999999999999998753 3345666665321 1456899999999999999999999999999
Q ss_pred CCCcCCCCCCcC-----------------------ccccccccc--c----cccceEEEeeCCceeEEEeccCCCCCccc
Q 011798 90 EFGQLGDGTEEG-----------------------RKHPEKVKQ--L----QSEFVKSISCGAHCTAAIAEPRENDGTIS 140 (477)
Q Consensus 90 ~~gqLG~~~~~~-----------------------~~~p~~v~~--~----~~~~i~~i~~g~~~s~~l~~~~~~~~~~~ 140 (477)
.+||||.+.... ...|+++.. + ...+|++|+||..|+++|++
T Consensus 95 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~--------- 165 (473)
T 3of7_A 95 DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFS--------- 165 (473)
T ss_dssp TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEET---------
T ss_pred CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeC---------
Confidence 999999987654 456777765 4 35789999999999999999
Q ss_pred cCcEEEecCC--CCCCCC--------ceeecC--CCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCC-
Q 011798 141 TSRLWVWGQN--QGSNFP--------RLFWGA--FTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEG- 207 (477)
Q Consensus 141 ~g~v~~wG~~--~~~~~~--------~~~~~~--~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~- 207 (477)
+|+||+||.+ ..+++. ...+.. .....+|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus 166 ~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 245 (473)
T 3of7_A 166 NGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245 (473)
T ss_dssp TSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT
T ss_pred CCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc
Confidence 9999999983 222221 112222 223456999999999999999999999999999999998764321
Q ss_pred --CCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCC-CccccceeeeecCCce
Q 011798 208 --LQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSG-DKELLPRRVVALDGIF 284 (477)
Q Consensus 208 --~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~-~~~~~p~~i~~~~~~~ 284 (477)
...|..+ ...+|++|+||.+|+++|+++|+||+||.|.+||||.+..... .....|.++..+.+.+
T Consensus 246 ~~~~~p~~~-----------~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~ 314 (473)
T 3of7_A 246 LKTLDPRPF-----------GLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVV 314 (473)
T ss_dssp TTTCSCEEC-----------SCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCC
T ss_pred ccccCceec-----------CCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCcc
Confidence 1223222 1257999999999999999999999999999999998774322 3456788998888889
Q ss_pred EEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccC-CCCCCccccccceeecCC-CeEEEEeCCceeEEEEe
Q 011798 285 IKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLI-PNESDTYFRNIPILVVPN-GVQLVACGHSHTLVYMR 362 (477)
Q Consensus 285 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~i~~G~~h~~~l~~ 362 (477)
|++|+||..|+++|+++|+||+||.|.+||||.+......... ...........|..+... +|++|+||.+|+++|++
T Consensus 315 i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~ 394 (473)
T 3of7_A 315 IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ 394 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999987643211000 000111112233333332 89999999999999999
Q ss_pred CCcEEEEeCCCCCCccCCC-CccccCCeecccc--c-CceEEEEecCCceEEEecC
Q 011798 363 DGRIHGWGYNSYGQAANEK-STYAWYPSPVDWC--V-GEVRKLAAGGGHSAVLADA 414 (477)
Q Consensus 363 ~g~v~~wG~n~~gqLG~~~-~~~~~~p~~v~~~--~-~~i~~v~~G~~~t~~l~~~ 414 (477)
+|+||+||.|.+||||.++ ......|++|+.. . .+|++|+||.+||+++...
T Consensus 395 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 395 NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp TSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 9999999999999999998 7788899999743 2 3799999999999999874
No 5
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.9e-66 Score=516.82 Aligned_cols=353 Identities=30% Similarity=0.543 Sum_probs=299.8
Q ss_pred CcccccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCC
Q 011798 2 DINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDG 81 (477)
Q Consensus 2 ~i~~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G 81 (477)
+|..|.++..+++ +|+++|+||+||+|..||||.+..+. ...|.+++.. ...+|++|+||..|+++|+++|
T Consensus 17 ~v~~ia~G~~hs~-al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l-------~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 17 KVLIISAGASHSV-ALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSAL-------DGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp CEEEEEECSSEEE-EEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGG-------TTSCEEEEEECSSEEEEEETTT
T ss_pred ceEEEecCCCeEE-EEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEeccc-------CCCCEEEEEeCcceEEEEECCC
Confidence 5778999998877 99999999999999999999886654 3567666521 4568999999999999999986
Q ss_pred -cEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCc---
Q 011798 82 -TLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPR--- 157 (477)
Q Consensus 82 -~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~--- 157 (477)
+||+||.|.+||||.+.......|.++..+...+|++|+||..|+++|++ +|+||+||.+..+|+..
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~---------~G~v~~wG~n~~GqLG~g~~ 158 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM---------EGEVQSWGRNQNGQLGLGDT 158 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEET---------TSCEEEEECCTTSTTCSSSC
T ss_pred CEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcC---------CCcEEEeCCCCCccCCCCCC
Confidence 99999999999999999888889999999988899999999999999999 99999999999887632
Q ss_pred ---eeec--CCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEE
Q 011798 158 ---LFWG--AFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQ 232 (477)
Q Consensus 158 ---~~~~--~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 232 (477)
..+. ......+|++|+||..|+++|+++|+||+||.|.+||||.+...... .|..+.. ....+|++
T Consensus 159 ~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~-~p~~v~~--------~~~~~i~~ 229 (406)
T 4d9s_A 159 EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-VPERVTS--------TGGEKMSM 229 (406)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEE-EEEECCC--------STTCCEEE
T ss_pred CCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcC-ccEEecc--------cCCceEEE
Confidence 1111 22235589999999999999999999999999999999998754322 2333322 22368999
Q ss_pred EecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCC
Q 011798 233 VSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQA 312 (477)
Q Consensus 233 i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~ 312 (477)
|+||.+|+++|+++|+||+||.|.+||||++... ....|.++..+.+.+|++|+||..|++||+++|+||+||.|.+
T Consensus 230 va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~---~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~ 306 (406)
T 4d9s_A 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE---DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306 (406)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCC---CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred EEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCc---CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCC
Confidence 9999999999999999999999999999998643 4567999998988899999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecc
Q 011798 313 GQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVD 392 (477)
Q Consensus 313 gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~ 392 (477)
||||.+.......+.+. + .....+|++|+||.+|+++|+++|+||+||.|.+||||.++..++..|++|+
T Consensus 307 GqLG~g~~~~~~~p~~v---------~-~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 307 GQVGVGNNLDQCSPVQV---------R-FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp STTCSSSSSCEEEEEEE---------C-CGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CCCCCCCCCCCccCEEE---------e-ccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEee
Confidence 99999876554221111 0 0133689999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011798 393 WC 394 (477)
Q Consensus 393 ~~ 394 (477)
.+
T Consensus 377 ~l 378 (406)
T 4d9s_A 377 AL 378 (406)
T ss_dssp GG
T ss_pred ee
Confidence 55
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-62 Score=492.36 Aligned_cols=342 Identities=29% Similarity=0.516 Sum_probs=290.2
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCcc
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTI 139 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~ 139 (477)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+...+|++|+||..|+++|++
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~-------- 85 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ-------- 85 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEET--------
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEEC--------
Confidence 457899999999999999999999999999999999999998899999999988899999999999999998
Q ss_pred ccC-cEEEecCCCCCCCCc--------eeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCC
Q 011798 140 STS-RLWVWGQNQGSNFPR--------LFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQG 210 (477)
Q Consensus 140 ~~g-~v~~wG~~~~~~~~~--------~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~ 210 (477)
++ +||+||.+..+++.. +.+.......+|++|+||..|+++|+++|+||+||.|.+||||.+..... ..
T Consensus 86 -~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~-~~ 163 (406)
T 4d9s_A 86 -SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS-LV 163 (406)
T ss_dssp -TTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCE-EE
T ss_pred -CCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCc-cc
Confidence 65 999999998877632 12222234568999999999999999999999999999999999875432 23
Q ss_pred CeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEc
Q 011798 211 PRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVAC 290 (477)
Q Consensus 211 ~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 290 (477)
|..+..+ ...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+|
T Consensus 164 p~~v~~~--------~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~---~~~~p~~v~~~~~~~i~~va~ 232 (406)
T 4d9s_A 164 PQKIQAF--------EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRT---DRLVPERVTSTGGEKMSMVAC 232 (406)
T ss_dssp EEECGGG--------TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSC---CEEEEEECCCSTTCCEEEEEE
T ss_pred ceEeccc--------CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCC---CcCccEEecccCCceEEEEEE
Confidence 3333322 23589999999999999999999999999999999998643 456788888888889999999
Q ss_pred cCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEe
Q 011798 291 GGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWG 370 (477)
Q Consensus 291 G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG 370 (477)
|.+|+++|+++|+||+||.|.+||||.+.......+. .++. ....+|++|+||.+|+++|+++|+||+||
T Consensus 233 G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~---------~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG 302 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH---------KLEA-LSNSFISQISGGWRHTMALTSDGKLYGWG 302 (406)
T ss_dssp CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEE---------ECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccE---------Eecc-cCCCCEEEEEecCCEEEEEcCCCeEEEee
Confidence 9999999999999999999999999998655432111 1111 12356999999999999999999999999
Q ss_pred CCCCCCccCCCCccccCCeeccccc-CceEEEEecCCceEEEecCCChhhhhhccccceeeecCCc
Q 011798 371 YNSYGQAANEKSTYAWYPSPVDWCV-GEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNAS 435 (477)
Q Consensus 371 ~n~~gqLG~~~~~~~~~p~~v~~~~-~~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~~~ 435 (477)
+|.+||||.++......|++++++. .+|++|+||.+|+++|+++ ++++.||.+...+|+.-.
T Consensus 303 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~---G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 303 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER---NNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp CCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETT---SCEEEEECCTTSTTCSSS
T ss_pred CCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCC---CCEEEecCCCCCccCCCC
Confidence 9999999999998888999998653 4899999999999999999 567778888888877643
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1e-58 Score=467.30 Aligned_cols=339 Identities=20% Similarity=0.241 Sum_probs=277.6
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCC-cCcccccccccccccceEEEeeCCceeEEEeccCCCCCc
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTE-EGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGT 138 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~-~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~ 138 (477)
...++++|++|..|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.. |++|+||..|+++|++
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~------- 92 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTK------- 92 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEET-------
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeC-------
Confidence 4567889999999999999999999999999999999975 35567888877654 8999999999999999
Q ss_pred cccCcEEEecCCCCCCCCce--------eecCCCCCCcEEEEecCCceeEEEecCCcEEEeec--CCCCCCcCCCCCCCC
Q 011798 139 ISTSRLWVWGQNQGSNFPRL--------FWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGY--NEYGQLGRGITCEGL 208 (477)
Q Consensus 139 ~~~g~v~~wG~~~~~~~~~~--------~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~ 208 (477)
+|+||+||.+..+|+... .+..+....+|++|+||..|+++|+++|+||+||. |.+||||.+.....
T Consensus 93 --~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~- 169 (423)
T 3mvd_K 93 --SGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK- 169 (423)
T ss_dssp --TSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCE-
T ss_pred --CCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC-
Confidence 999999999998876432 22222334689999999999999999999999999 99999998765332
Q ss_pred CCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCC--------CCccccceeeeec
Q 011798 209 QGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQS--------GDKELLPRRVVAL 280 (477)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~--------~~~~~~p~~i~~~ 280 (477)
+.++. .....+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ......|.++...
T Consensus 170 --~~p~~--------~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~ 239 (423)
T 3mvd_K 170 --RTPID--------LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239 (423)
T ss_dssp --EEEEE--------SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT
T ss_pred --ceeeE--------ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec
Confidence 11211 12346899999999999999999999999999999999976432 2244678888888
Q ss_pred CCceEEEEEccCceEEEE-ecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEE
Q 011798 281 DGIFIKDVACGGVHSCAL-TSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLV 359 (477)
Q Consensus 281 ~~~~i~~i~~G~~h~~~l-t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~ 359 (477)
...+|++|+||.+|++++ +++|+||+||.|.+||||.+...... ...|......+|++|+||.+|+++
T Consensus 240 ~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~-----------~~~p~~~~~~~v~~ia~G~~ht~a 308 (423)
T 3mvd_K 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEF-----------ALTPIKTELKDIRHIAGGQHHTVI 308 (423)
T ss_dssp TCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSE-----------EEEEEEECCCSEEEEEECSSEEEE
T ss_pred CCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCce-----------eeeeEEcCCCCeEEEEcccCeEEE
Confidence 888899999999999999 69999999999999999986543321 122333335689999999999999
Q ss_pred EEeCCcEEEEeCCCCCCccCCCCcc-ccCCeecccccCceEEEEecCCceEEEecCCChhhhhhccccceeeecCC
Q 011798 360 YMRDGRIHGWGYNSYGQAANEKSTY-AWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNA 434 (477)
Q Consensus 360 l~~~g~v~~wG~n~~gqLG~~~~~~-~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~~ 434 (477)
|+++|+||+||.|.+||||.++... ...|++++.+..+|++|+||.+|+++|+++ .++|.||.+...+|+.-
T Consensus 309 lt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~---G~v~~wG~n~~GqLG~g 381 (423)
T 3mvd_K 309 LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTID---GKLYSWGSGVNNQLGVG 381 (423)
T ss_dssp EETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETT---SCEEEEECCTTSCSSSS
T ss_pred EeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCC---CCEEEECCCCCCCCCCC
Confidence 9999999999999999999988765 467888887766899999999999999999 56777888888888764
No 8
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=464.84 Aligned_cols=336 Identities=26% Similarity=0.446 Sum_probs=268.3
Q ss_pred EEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcE
Q 011798 65 LDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRL 144 (477)
Q Consensus 65 ~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v 144 (477)
+++..-..+.++|+++|+||+||.|.+||||.+.......|+++..+...++++|+||..|+++|++ +|+|
T Consensus 4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~---------~G~v 74 (389)
T 3kci_A 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA---------DGKL 74 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEET---------TSCE
T ss_pred cccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcC---------CCcE
Confidence 3455567789999999999999999999999988888888999988888899999999999999999 9999
Q ss_pred EEecCCCCCCCCc----------eeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeee
Q 011798 145 WVWGQNQGSNFPR----------LFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVI 214 (477)
Q Consensus 145 ~~wG~~~~~~~~~----------~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i 214 (477)
|+||.+..+|+.. .+........++++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+
T Consensus 75 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v 153 (389)
T 3kci_A 75 YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP-CDRPRVI 153 (389)
T ss_dssp EEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEEC
T ss_pred EEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc-CcCCeEe
Confidence 9999998877632 1211112234568999999999999999999999999999999987532 2334444
Q ss_pred eccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccC--
Q 011798 215 KGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGG-- 292 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-- 292 (477)
..+ ...+|++|+||..|+++|+++|+||+||.|.+||||++... ....|.++..+.+.+|++|+||.
T Consensus 154 ~~l--------~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~---~~~~p~~v~~~~~~~v~~ia~G~g~ 222 (389)
T 3kci_A 154 ESL--------RGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE---DQLKPKLVEALQGHRVVDIACGSGD 222 (389)
T ss_dssp GGG--------TTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC---CEEEEEECGGGTTSCEEEEEECCSS
T ss_pred ccc--------CCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc---ccccceEecccCCCeEEEEEEcCCC
Confidence 332 23589999999999999999999999999999999998743 45678999888888999999995
Q ss_pred ceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCC
Q 011798 293 VHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 293 ~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n 372 (477)
.|+++|+++|+||+||.|.+||||.+.......+. .++. ....+|++|+||.+|+++|+++|+||+||.|
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~---------~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM---------KIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE---------ECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE---------Eecc-cCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999999999999999998655432111 1110 1234699999999999999999999999999
Q ss_pred CCCCccCCCCccccCCeecccccC-ceEEEEecCCceEEEecCCChhhhhhccccceeeecCC
Q 011798 373 SYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNA 434 (477)
Q Consensus 373 ~~gqLG~~~~~~~~~p~~v~~~~~-~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~~ 434 (477)
.+||||.+.......|++++.+.+ +|++|+||.+|+++|++++ +++.||.+...+|+..
T Consensus 293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G---~v~~wG~n~~GqLG~g 352 (389)
T 3kci_A 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDG---EVYTWGDNDEGQLGDG 352 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTC---CEEEEECCTTSTTCSS
T ss_pred CCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCC---CEEEeeCCCCCcCCCC
Confidence 999999999988999999987654 7999999999999999994 6778888888887764
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.7e-58 Score=461.44 Aligned_cols=335 Identities=22% Similarity=0.336 Sum_probs=270.5
Q ss_pred EEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcC-cccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcE
Q 011798 66 DIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEG-RKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRL 144 (477)
Q Consensus 66 ~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v 144 (477)
+.+.+..|+++|+++|+||+||.|.+||||++.... ...|+++..+ .+|++|+||..|+++|++ +|+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~---------~G~v 80 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSK---------SGQV 80 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEET---------TSCE
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcC---------CCCE
Confidence 455668899999999999999999999999998654 5678887643 679999999999999999 9999
Q ss_pred EEecCCCCCCCCcee--------ecCCCCCCcEEEEecCCceeEEEecCCcEEEeec--CCCCCCcCCCCCCCCCCCeee
Q 011798 145 WVWGQNQGSNFPRLF--------WGAFTPNTIICQVSCGSVHVVALSECGLLQAWGY--NEYGQLGRGITCEGLQGPRVI 214 (477)
Q Consensus 145 ~~wG~~~~~~~~~~~--------~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~i 214 (477)
|+||.+..+|+.... +..+....+|++|+||..|+++|+++|+||+||. |.+||||.+........|..+
T Consensus 81 ~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v 160 (413)
T 1a12_A 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV 160 (413)
T ss_dssp EEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe
Confidence 999999887764321 1112224589999999999999999999999999 999999988654433334433
Q ss_pred eccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCC--------ccccceeeeec-----C
Q 011798 215 KGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGD--------KELLPRRVVAL-----D 281 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~--------~~~~p~~i~~~-----~ 281 (477)
....+|++|+||.+|+++|+++|+||+||.|.+||||.+...... ....|+.+... .
T Consensus 161 ----------~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~ 230 (413)
T 1a12_A 161 ----------QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRG 230 (413)
T ss_dssp ----------CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCS
T ss_pred ----------cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccC
Confidence 123689999999999999999999999999999999986532211 23567665543 3
Q ss_pred CceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceee-cCCCeEEEEeCCceeEEE
Q 011798 282 GIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVY 360 (477)
Q Consensus 282 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~G~~h~~~l 360 (477)
..+|++|+||.+|+++|+++|+||+||.|.+||||.+.......+. .++.+. ...+|++|+||.+|+++|
T Consensus 231 ~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~---------~v~~l~~~~~~v~~ia~G~~hs~al 301 (413)
T 1a12_A 231 HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ---------NLTSFKNSTKSWVGFSGGQHHTVCM 301 (413)
T ss_dssp BCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEE---------ECGGGCCTTCCEEEEEECSSEEEEE
T ss_pred CccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccE---------EchhccCCCceEEEEecccceEEEE
Confidence 4679999999999999999999999999999999998765432111 111110 114699999999999999
Q ss_pred EeCCcEEEEeCCCCCCccCC-CCccccCCeecccccCceEEEEecCCceEEEecCCChhhhhhccccceeeecCC
Q 011798 361 MRDGRIHGWGYNSYGQAANE-KSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSNA 434 (477)
Q Consensus 361 ~~~g~v~~wG~n~~gqLG~~-~~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~~ 434 (477)
+++|+||+||.|.+||||.+ +......|++|+.+. +|++|+||.+|+++|++++ +++.||.+...+|+..
T Consensus 302 ~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~-~v~~v~~G~~hs~alt~~G---~v~~wG~n~~gqLG~g 372 (413)
T 1a12_A 302 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-AVSSVACGASVGYAVTKDG---RVFAWGMGTNYQLGTG 372 (413)
T ss_dssp ETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS-SEEEEEECSSEEEEEETTS---CEEEEECCTTSTTCSS
T ss_pred eCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC-ceeEEEECcceEEEEeCCC---CEEEecCCCCCCCCCC
Confidence 99999999999999999998 566678899988655 8999999999999999994 6777888887777754
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-56 Score=455.31 Aligned_cols=340 Identities=24% Similarity=0.326 Sum_probs=265.8
Q ss_pred CCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCc---Ccccccccccc--cccceEEEeeCCceeEEEeccCCC
Q 011798 61 NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEE---GRKHPEKVKQL--QSEFVKSISCGAHCTAAIAEPREN 135 (477)
Q Consensus 61 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~---~~~~p~~v~~~--~~~~i~~i~~g~~~s~~l~~~~~~ 135 (477)
...|....+...|+++++++|+||+||.|.+||||++... ....|+.++.+ ...+|++|+||..|+++|++
T Consensus 9 ~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~---- 84 (473)
T 3of7_A 9 MSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDE---- 84 (473)
T ss_dssp CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEET----
T ss_pred hhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEec----
Confidence 3456777899999999999999999999999999999843 45667777665 45689999999999999999
Q ss_pred CCccccCcEEEecCCCCCCCCcee-----------------------------ecC-----CC---CCCcEEEEecCCce
Q 011798 136 DGTISTSRLWVWGQNQGSNFPRLF-----------------------------WGA-----FT---PNTIICQVSCGSVH 178 (477)
Q Consensus 136 ~~~~~~g~v~~wG~~~~~~~~~~~-----------------------------~~~-----~~---~~~~i~~vs~G~~~ 178 (477)
+|+||+||.|..+|+.... +.. ++ ...+|++|+||..|
T Consensus 85 -----~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~h 159 (473)
T 3of7_A 85 -----ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNM 159 (473)
T ss_dssp -----TCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSE
T ss_pred -----CCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCE
Confidence 9999999999988764321 111 11 35789999999999
Q ss_pred eEEEecCCcEEEeec--CCCCCCcCCCCC-CCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCC
Q 011798 179 VVALSECGLLQAWGY--NEYGQLGRGITC-EGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLG 255 (477)
Q Consensus 179 ~~~lt~~G~vy~wG~--n~~gqlG~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n 255 (477)
+++|+++|+||+||. |.+||||.+... .....|..++.+ ...+|++|+||..|+++|+++|+||+||.|
T Consensus 160 s~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l--------~~~~i~~va~G~~hs~alt~~G~v~~wG~n 231 (473)
T 3of7_A 160 SCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTF--------SKYNIVQLAPGKDHILFLDEEGMVFAWGNG 231 (473)
T ss_dssp EEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCC--------CSSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEcccc--------CCCCEEEEEecCCeEEEEeCCCeEEEEeCC
Confidence 999999999999998 678999985432 223334444332 235799999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCcc
Q 011798 256 SVGQLGHCSLQS-GDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTY 334 (477)
Q Consensus 256 ~~gqlg~~~~~~-~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~ 334 (477)
.+||||.+.... ......|..+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+...... .
T Consensus 232 ~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~---------~ 299 (473)
T 3of7_A 232 QQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG---------A 299 (473)
T ss_dssp TTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTT---------C
T ss_pred CCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCC---------c
Confidence 999999876432 112345665532 469999999999999999999999999999999988654210 0
Q ss_pred ccccceee---cCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCc--------------cccCCeecccccCc
Q 011798 335 FRNIPILV---VPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKST--------------YAWYPSPVDWCVGE 397 (477)
Q Consensus 335 ~~~~~~~~---~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~--------------~~~~p~~v~~~~~~ 397 (477)
....|..+ ...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|++++.+ .+
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~-~~ 378 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV-PK 378 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS-CC
T ss_pred eeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC-Cc
Confidence 11112222 23579999999999999999999999999999999976431 22345555432 27
Q ss_pred eEEEEecCCceEEEecCCChhhhhhccccceeeecC
Q 011798 398 VRKLAAGGGHSAVLADACSLKELCEFRLAESVTLSN 433 (477)
Q Consensus 398 i~~v~~G~~~t~~l~~~~~l~~l~~~~~~~~~~~~~ 433 (477)
|++|+||.+|+++|++++ ++|.||.+...+|+.
T Consensus 379 v~~Ia~G~~hs~al~~~G---~vy~wG~n~~GqLG~ 411 (473)
T 3of7_A 379 FKSVAAGSHHSVAVAQNG---IAYSWGFGETYAVGL 411 (473)
T ss_dssp EEEEEECSSEEEEEETTS---CEEEEECCTTCTTCC
T ss_pred eEEEEeCCCeEEEEeCCC---cEEEeeCCCCCCCCC
Confidence 999999999999999995 566677766665554
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4.9e-54 Score=407.30 Aligned_cols=274 Identities=27% Similarity=0.408 Sum_probs=226.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCc
Q 011798 21 SAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEE 100 (477)
Q Consensus 21 g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~ 100 (477)
.+||+||+|...++.. .|.+ ...+|++|+||..|+++|+ +|+||+||.|.+||||.
T Consensus 2 ~~v~~WG~n~~~~~~~--------~p~~-----------~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~---- 57 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEAT--------VPAE-----------AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM---- 57 (282)
T ss_dssp CEEEEECSCCTTSTTC--------CCGG-----------GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC----
T ss_pred eEEEEeCCCCCcCccc--------CCcc-----------ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC----
Confidence 4699999987555431 2221 3357999999999999998 99999999999999995
Q ss_pred CcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeE
Q 011798 101 GRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVV 180 (477)
Q Consensus 101 ~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~ 180 (477)
|.. ...+|++|+||..|+++| + +|+||+||.+..+|+..+... ..+|++|+||..|++
T Consensus 58 ----p~~----~~~~i~~ia~G~~hs~~l-~---------~G~v~~wG~n~~Gqlg~P~~~----~~~v~~ia~G~~hs~ 115 (282)
T 3qhy_B 58 ----PAA----TQSGVDAIAAGNYHSLAL-K---------DGEVIAWGGNEDGQTTVPAEA----RSGVDAIAAGAWASY 115 (282)
T ss_dssp ----CGG----GGSCCCEEEECSSEEEEE-E---------TTEEEEEECCTTSTTCCCGGG----SSSEEEEEEETTEEE
T ss_pred ----Ccc----CCCCEEEEEeCCCEEEEE-E---------CCEEEEeeCCCCCCCCCCccc----CCCeEEEECcCCEEE
Confidence 222 234799999999999999 5 899999999999988643321 358999999999999
Q ss_pred EEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCC
Q 011798 181 ALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQL 260 (477)
Q Consensus 181 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gql 260 (477)
+|+ +|+||+||.|.+||||... +...+|++|+||..|+++|+ +|+||+||.|.+|||
T Consensus 116 al~-~G~v~~wG~n~~gqlg~~~---------------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 116 ALK-DGKVIAWGDDSDGQTTVPA---------------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp EEE-TTEEEEEECCTTSTTSCCG---------------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT
T ss_pred EEe-CCeEEEecCCCCCcCCCCc---------------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCC
Confidence 999 9999999999999997421 11257999999999999999 899999999999999
Q ss_pred CCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccce
Q 011798 261 GHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPI 340 (477)
Q Consensus 261 g~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~ 340 (477)
|. |..+ ..+|++|+||..|+++| ++|+||+||.|.+||||.+..
T Consensus 173 g~-----------p~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-------------------- 216 (282)
T 3qhy_B 173 TV-----------PAEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-------------------- 216 (282)
T ss_dssp SC-----------CGGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--------------------
T ss_pred CC-----------ceec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--------------------
Confidence 84 2222 24599999999999999 899999999999999985321
Q ss_pred eecCCCeEEEEeCCceeEEEEeCCcEEEEeCCCCCCccCCCCccccCCeecccccCceEEEEecCCceEEEecCCCh
Q 011798 341 LVVPNGVQLVACGHSHTLVYMRDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLADACSL 417 (477)
Q Consensus 341 ~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~i~~v~~G~~~t~~l~~~~~l 417 (477)
...+|++|+||.+|+++|+ +|+||+||.|.++|++.. ..|++|+||..|+++|+++...
T Consensus 217 --~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------------~~v~~iaaG~~h~~al~~~~~~ 275 (282)
T 3qhy_B 217 --ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------------SGVSSIEAGPNAAYALKGGSGS 275 (282)
T ss_dssp --GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS---------------SCEEEEEECSSCEEEEEC----
T ss_pred --cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC---------------CCcEEEEECcCeEEEEecCCCC
Confidence 1146889999999999999 999999999999998741 2699999999999999998543
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4.2e-49 Score=373.43 Aligned_cols=252 Identities=25% Similarity=0.405 Sum_probs=212.4
Q ss_pred CcccccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCC
Q 011798 2 DINEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDG 81 (477)
Q Consensus 2 ~i~~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G 81 (477)
+|.+|.++..+++ +|+ +|+||+||.|..||||. |.. ...+|++|+||..|+++|+ +|
T Consensus 25 ~i~~ia~G~~h~~-~l~-~G~v~~wG~n~~Gqlg~---------p~~-----------~~~~i~~ia~G~~hs~~l~-~G 81 (282)
T 3qhy_B 25 GVDAIAGGYFHGL-ALK-GGKVLGWGANLNGQLTM---------PAA-----------TQSGVDAIAAGNYHSLALK-DG 81 (282)
T ss_dssp SCCEEEECSSEEE-EEE-TTEEEEEECCSSSTTSC---------CGG-----------GGSCCCEEEECSSEEEEEE-TT
T ss_pred CCcEEEeCCCeEE-EEE-CCEEEEEeCCCCCCCCC---------Ccc-----------CCCCEEEEEeCCCEEEEEE-CC
Confidence 5889999998777 888 99999999999999993 322 2347999999999999996 99
Q ss_pred cEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeec
Q 011798 82 TLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWG 161 (477)
Q Consensus 82 ~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~ 161 (477)
+||+||.|.+||||. |.++. .+|++|+||..|+++|+ +|+||+||.+..+|++.+..
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~----------~G~v~~wG~n~~gqlg~~~~- 138 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK----------DGKVIAWGDDSDGQTTVPAE- 138 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE----------TTEEEEEECCTTSTTSCCGG-
T ss_pred EEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe----------CCeEEEecCCCCCcCCCCcc-
Confidence 999999999999995 44442 47999999999999997 68999999999999875432
Q ss_pred CCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEE
Q 011798 162 AFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSA 241 (477)
Q Consensus 162 ~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~ 241 (477)
...+|++|+||..|+++|+ +|+||+||.|.+||||... . ...+|++|+||.+|++
T Consensus 139 ---~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~---------~------------~~~~v~~i~~G~~hs~ 193 (282)
T 3qhy_B 139 ---AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA---------E------------AQSGVDDVAGGIFHSL 193 (282)
T ss_dssp ---GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG---------G------------GGSSEEEEEECSSEEE
T ss_pred ---CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce---------e------------cCCCeEEEEecCCEEE
Confidence 3467999999999999999 8999999999999997321 1 1257999999999999
Q ss_pred EEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCCCCCCCCCCCCC
Q 011798 242 AVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGSQAGQLGLGPQT 321 (477)
Q Consensus 242 ~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~ 321 (477)
+| ++|+||+||.|.+||||.+. . .+ .+|++|+||..|+++|+ +|+||+||.|.++|++.
T Consensus 194 al-~~G~v~~wG~n~~gqlg~p~-----------~--~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v---- 252 (282)
T 3qhy_B 194 AL-KDGKVIAWGDNRYKQTTVPT-----------E--AL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV---- 252 (282)
T ss_dssp EE-ETTEEEEEECCTTSTTCCCG-----------G--GG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG----
T ss_pred EE-ECCeEEEEECCCCCCCCCCc-----------c--cC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC----
Confidence 99 89999999999999998532 1 12 24899999999999999 99999999999999863
Q ss_pred CccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEE
Q 011798 322 RSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIH 367 (477)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~ 367 (477)
+.+|++|+||..|+++|+++++.+
T Consensus 253 ----------------------~~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 253 ----------------------QSGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ----------------------SSCEEEEEECSSCEEEEEC-----
T ss_pred ----------------------CCCcEEEEECcCeEEEEecCCCCC
Confidence 246899999999999999987654
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.44 E-value=0.0071 Score=53.36 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=60.5
Q ss_pred CcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCceEEEEeeC
Q 011798 167 TIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSEN 246 (477)
Q Consensus 167 ~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~ 246 (477)
..|..|+....|..++--+++++.||+|++||+-.... .....++.+|..+++-+..-
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t----------------------agPfla~~AG~~fTVTVn~~ 366 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH----------------------AGPYIQLAAGHNFTVTVNTL 366 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG----------------------GCCEEEEEECSSEEEEEETT
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC----------------------cchHHhHhccCCeEEEEece
Confidence 56889999999999999999999999999999854322 13688999999999999999
Q ss_pred CcEEEEeCCCCCCC
Q 011798 247 GEVYTWGLGSVGQL 260 (477)
Q Consensus 247 g~v~~wG~n~~gql 260 (477)
..|-.||+.....|
T Consensus 367 nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 367 NQVMFWGDSPDNSL 380 (400)
T ss_dssp CCEEEEECCTTSTT
T ss_pred eeEEEecCCCCcce
Confidence 99999998665544
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.19 E-value=0.025 Score=49.95 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=55.5
Q ss_pred cccccCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCc
Q 011798 3 INEIIGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGT 82 (477)
Q Consensus 3 i~~i~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~ 82 (477)
|..|.|...|.+ .+--+++++.||+|++|||-. |.. ..+..++.+|..+++-+..-..
T Consensus 311 i~~VsG~y~H~v-vi~gd~el~sFG~~sNGQ~~i---------p~t------------agPfla~~AG~~fTVTVn~~ny 368 (400)
T 4gbf_A 311 IGGVSGLYTHYT-VMYGDGQIAFFGNNDNGQCDV---------DDH------------AGPYIQLAAGHNFTVTVNTLNQ 368 (400)
T ss_dssp CCCCBCSSSEEE-C-CTTTCCCEEECCTTSTTCC---------CGG------------GCCEEEEEECSSEEEEEETTCC
T ss_pred cccccccccceE-EEecCceeEEeccCCCCceec---------CCC------------cchHHhHhccCCeEEEEeceee
Confidence 456667777777 688999999999999999863 322 2357899999999999999999
Q ss_pred EEEEeCCCCCcC
Q 011798 83 LFTWGANEFGQL 94 (477)
Q Consensus 83 vy~wG~n~~gqL 94 (477)
+-.||......|
T Consensus 369 v~FWGDSPDNSL 380 (400)
T 4gbf_A 369 VMFWGDSPDNSL 380 (400)
T ss_dssp EEEEECCTTSTT
T ss_pred EEEecCCCCcce
Confidence 999998655554
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.75 E-value=3.3 Score=40.17 Aligned_cols=192 Identities=11% Similarity=0.138 Sum_probs=112.1
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCcc
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTI 139 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~ 139 (477)
....|..++......+.-..||.|..|-....-.+ ..+. .....|..++......+.-..
T Consensus 172 h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~l~~~~~~l~s~s~-------- 231 (435)
T 1p22_A 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEML-----------NTLI-HHCEAVLHLRFNNGMMVTCSK-------- 231 (435)
T ss_dssp CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEE-----------EEEC-CCCSCEEEEECCTTEEEEEET--------
T ss_pred CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEE-----------EEEc-CCCCcEEEEEEcCCEEEEeeC--------
Confidence 34568888886666667778999999975421100 0111 123456666665555444454
Q ss_pred ccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccc
Q 011798 140 STSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAK 219 (477)
Q Consensus 140 ~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~ 219 (477)
++.|.+|-......... ..........|..++....+.+.-..+|.|..|-.... ..+..+.
T Consensus 232 -dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---------------~~~~~~~- 293 (435)
T 1p22_A 232 -DRSIAVWDMASPTDITL-RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC---------------EFVRTLN- 293 (435)
T ss_dssp -TSCEEEEECSSSSCCEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC---------------CEEEEEE-
T ss_pred -CCcEEEEeCCCCCCcee-eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC---------------cEEEEEc-
Confidence 89999997655433211 11112234567777777777777788999999953221 1111111
Q ss_pred ccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEe
Q 011798 220 FLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALT 299 (477)
Q Consensus 220 ~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt 299 (477)
.....|..++......+.-..+|.|..|-.... + +..........|..++....+.+.-.
T Consensus 294 -----~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~-~--------------~~~~~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 294 -----GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-A--------------CLRVLEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp -----CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-C--------------EEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred -----CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC-C--------------EEEEEeCCcCcEEEEEecCCEEEEEe
Confidence 112356666666666666778999999965321 0 11111112234777777666666677
Q ss_pred cCCcEEEEeC
Q 011798 300 SKGALYAWGG 309 (477)
Q Consensus 300 ~~G~vy~wG~ 309 (477)
.+|.|..|-.
T Consensus 354 ~dg~i~vwd~ 363 (435)
T 1p22_A 354 YDGKIKVWDL 363 (435)
T ss_dssp TTSCEEEEEH
T ss_pred CCCcEEEEEC
Confidence 8999999974
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.46 E-value=4 Score=42.37 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=38.1
Q ss_pred CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEE----ccCceEEE-EecCCcEEEEeCCC
Q 011798 237 EYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVA----CGGVHSCA-LTSKGALYAWGGSQ 311 (477)
Q Consensus 237 ~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~----~G~~h~~~-lt~~G~vy~wG~n~ 311 (477)
..|++++..+|+||+.|-...++. ... ......+.... +...+...+. .-..|+++ +..+|+||..|.+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~---~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FED---STPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCC---CSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCC---CCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 457777777999999986443321 100 01111122221 1112222222 22467654 56899999999876
Q ss_pred CCC
Q 011798 312 AGQ 314 (477)
Q Consensus 312 ~gq 314 (477)
++.
T Consensus 532 ~~~ 534 (656)
T 1k3i_A 532 CGD 534 (656)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.39 E-value=6 Score=38.23 Aligned_cols=231 Identities=11% Similarity=0.115 Sum_probs=132.2
Q ss_pred CCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccc
Q 011798 61 NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTIS 140 (477)
Q Consensus 61 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~ 140 (477)
...|..++....+.+.-..+|.|..|-... +++ ...+. -....|..++......+.-..
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~~----------~~~~~-~h~~~v~~l~~~~~~l~sg~~--------- 191 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNT-LEC----------KRILT-GHTGSVLCLQYDERVIITGSS--------- 191 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSS-CCE----------EEEEC-CCSSCEEEEECCSSEEEEEET---------
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCC-CeE----------EEEEc-CCCCcEEEEEECCCEEEEEcC---------
Confidence 345778888777777778899999996432 110 00111 123356666664443333344
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKF 220 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~ 220 (477)
||.|.+|-...... ..........|..++......+.-..+|.|..|-...... ......+
T Consensus 192 dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~------------~~~~~~~--- 252 (435)
T 1p22_A 192 DSTVRVWDVNTGEM----LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD------------ITLRRVL--- 252 (435)
T ss_dssp TSCEEEEESSSCCE----EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC------------CEEEEEE---
T ss_pred CCeEEEEECCCCcE----EEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC------------ceeeeEe---
Confidence 88999997654322 1111223456888888777778888899999995332111 1000000
Q ss_pred cccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEec
Q 011798 221 LDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTS 300 (477)
Q Consensus 221 ~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~ 300 (477)
......|..++....+.+.-..+|.|..|-..... ....+. .....|..++......+.-..
T Consensus 253 ---~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------------~~~~~~-~~~~~v~~~~~~~~~l~~g~~ 314 (435)
T 1p22_A 253 ---VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--------------FVRTLN-GHKRGIACLQYRDRLVVSGSS 314 (435)
T ss_dssp ---CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC--------------EEEEEE-CCSSCEEEEEEETTEEEEEET
T ss_pred ---cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc--------------EEEEEc-CCCCcEEEEEeCCCEEEEEeC
Confidence 01123577777666666677789999999643210 011111 122346666666666677778
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeC
Q 011798 301 KGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGY 371 (477)
Q Consensus 301 ~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~ 371 (477)
+|.|..|-....-.+. .+. .....|..++....+.+.-..||.|..|-.
T Consensus 315 dg~i~iwd~~~~~~~~-----------------~~~-----~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 315 DNTIRLWDIECGACLR-----------------VLE-----GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp TSCEEEEETTTCCEEE-----------------EEC-----CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CCeEEEEECCCCCEEE-----------------EEe-----CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 9999999754311000 000 012346677775666666668899999963
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.40 E-value=8.3 Score=37.27 Aligned_cols=232 Identities=10% Similarity=0.122 Sum_probs=129.1
Q ss_pred CCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccc
Q 011798 61 NSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTIS 140 (477)
Q Consensus 61 ~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~ 140 (477)
...|..++......+.-..||.|+.|-...... ...+. .....|..++......+.-..
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~s~s~--------- 217 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC-----------IHTLY-GHTSTVRCMHLHEKRVVSGSR--------- 217 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTEEEEEET---------
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcE-----------EEEEC-CCCCcEEEEEecCCEEEEEeC---------
Confidence 345777777677777778899999996542110 00111 122345555554444444444
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKF 220 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~ 220 (477)
++.+.+|-........ ........|..++......+.-..+|.|..|-... ...+..+.
T Consensus 218 dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~---------------~~~~~~~~-- 276 (445)
T 2ovr_B 218 DATLRVWDIETGQCLH----VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---------------ETCLHTLQ-- 276 (445)
T ss_dssp TSEEEEEESSSCCEEE----EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG---------------TEEEEEEC--
T ss_pred CCEEEEEECCCCcEEE----EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCC---------------CcEeEEec--
Confidence 8899999765432211 11122445777777666777778899998885321 11111111
Q ss_pred cccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEec
Q 011798 221 LDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTS 300 (477)
Q Consensus 221 ~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~ 300 (477)
.....|..++....+.+.-..+|.|..|-...... ...+. .....+..++......+.-..
T Consensus 277 ----~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~-~~~~~v~~~~~~~~~l~~~~~ 337 (445)
T 2ovr_B 277 ----GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--------------IHTLT-GHQSLTSGMELKDNILVSGNA 337 (445)
T ss_dssp ----CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--------------EEEEC-CCCSCEEEEEEETTEEEEEET
T ss_pred ----CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--------------EEEEc-CCcccEEEEEEeCCEEEEEeC
Confidence 11235777777666666677899999996532110 00111 112235556655666666778
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCC
Q 011798 301 KGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 301 ~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n 372 (477)
+|.|..|-....-.+. .+.. + ......|..++....+.+.-..||.|..|-..
T Consensus 338 dg~i~vwd~~~~~~~~-----------------~~~~-~-~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQ-----------------TLQG-P-NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TSCEEEEETTTCCEEE-----------------EECS-T-TSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCeEEEEECCCCcEEE-----------------EEcc-C-CCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 9999999753311100 0000 0 00123466777766666666789999999654
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.96 E-value=4.8 Score=41.76 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=28.1
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEe----cCCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVS----CGSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs----~G~~~~~~lt~~G~vy~wG~ 193 (477)
++++|++|-......... . +...+...+. .=..|++++..+|+||.+|-
T Consensus 253 ~g~lyv~GG~~~~~v~~y-d---~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLY-D---SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp TSCEEEECSSSTTCEEEE-E---GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred CCCEEEeCCCCCCceEEe-c---CcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 899999997554321111 0 0111222221 12357777777999999986
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.90 E-value=6.4 Score=41.16 Aligned_cols=19 Identities=5% Similarity=-0.204 Sum_probs=15.0
Q ss_pred CCceEEEEeeCCcEEEEeC
Q 011798 236 GEYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 236 G~~~s~~lt~~g~v~~wG~ 254 (477)
-..|++++..++++|++|-
T Consensus 597 R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CBSCEEEEEETTEEEEECC
T ss_pred cccceEEEeCCCEEEEECC
Confidence 3567887777799999985
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=87.98 E-value=20 Score=34.52 Aligned_cols=226 Identities=11% Similarity=0.076 Sum_probs=123.8
Q ss_pred EEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCc
Q 011798 64 WLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSR 143 (477)
Q Consensus 64 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~ 143 (477)
+..++......+.-..||.|..|-......+ ..+. -....|..++......+.-.. |+.
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~~~~~~~~l~s~~~---------dg~ 180 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLV-GHTGGVWSSQMRDNIIISGST---------DRT 180 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECC-CCSSCEEEEEEETTEEEEEET---------TSC
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEc-CCCCCEEEEEecCCEEEEEeC---------CCe
Confidence 4555555566666778889999975421110 0011 112345555544444444444 889
Q ss_pred EEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccccccc
Q 011798 144 LWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE 223 (477)
Q Consensus 144 v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~ 223 (477)
|.+|-...... ..........|..++......+.-+.+|.|+.|-.... +.+..+.
T Consensus 181 i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~---------------~~~~~~~----- 236 (445)
T 2ovr_B 181 LKVWNAETGEC----IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG---------------QCLHVLM----- 236 (445)
T ss_dssp EEEEETTTTEE----EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC---------------CEEEEEE-----
T ss_pred EEEEECCcCcE----EEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC---------------cEEEEEc-----
Confidence 99997654321 11112234567777777777778888999999953321 1111110
Q ss_pred CccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCc
Q 011798 224 APELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGA 303 (477)
Q Consensus 224 ~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~ 303 (477)
.....|..++......+.-+.+|.|..|-.... .+..........|..+.....+.+.-..+|.
T Consensus 237 -~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 237 -GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300 (445)
T ss_dssp -CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT---------------EEEEEECCCSSCEEEEEECSSEEEEEETTSC
T ss_pred -CCcccEEEEEECCCEEEEEcCCCEEEEEECCCC---------------cEeEEecCCCCceEEEEECCCEEEEEeCCCe
Confidence 112356666665666666778899999953211 0111111122347777776666677778999
Q ss_pred EEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEEeCC
Q 011798 304 LYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 304 vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~wG~n 372 (477)
|..|-......+. .+. .....+..++......+.-..||.|..|=..
T Consensus 301 i~i~d~~~~~~~~-----------------~~~-----~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 301 IRVWDVETGNCIH-----------------TLT-----GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEEETTTCCEEE-----------------EEC-----CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEE-----------------EEc-----CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 9999754311100 000 0112345555555556666688999999653
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.82 E-value=28 Score=36.20 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=29.6
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEe-c---------CCceeEEEec-CCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVS-C---------GSVHVVALSE-CGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs-~---------G~~~~~~lt~-~G~vy~wG~ 193 (477)
++.||++|-... .....+...-........+. . =..|++++.. +|++|.+|-
T Consensus 397 ~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 397 GNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp SSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECC
T ss_pred CCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcC
Confidence 788999987543 11111111111233455555 1 1368887776 899999984
No 23
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=84.18 E-value=28 Score=32.79 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCcEEEEEcc---cceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCce-eEEEeccCCCC
Q 011798 61 NSRWLDIACG---HEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHC-TAAIAEPREND 136 (477)
Q Consensus 61 ~~~i~~i~~G---~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~-s~~l~~~~~~~ 136 (477)
...|..++.. ....+.-..||.|..|-....+... ....|.....-....|..++..... ..+++..
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~---- 151 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG---- 151 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE----
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc----
Confidence 4567777764 3445555678999999765432110 1111211111123456666655442 1222211
Q ss_pred CccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC--CceeEEEecCCcEEEeec
Q 011798 137 GTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG--SVHVVALSECGLLQAWGY 193 (477)
Q Consensus 137 ~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~vy~wG~ 193 (477)
.|+.|.+|-........... .......|..++.. ....+....+|.|+.|-.
T Consensus 152 ---~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 152 ---CDNVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ---TTSCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred ---CCCEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 18899999765432111110 01223456666654 334555567888888853
No 24
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=81.51 E-value=10 Score=34.53 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=11.5
Q ss_pred ceeEEEecCCcEEEEeC
Q 011798 72 EHTAAVASDGTLFTWGA 88 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~ 88 (477)
.|++++ -+++||++|-
T Consensus 54 ~~~~~~-~~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVY-MAGLVFAVGG 69 (302)
T ss_dssp SCEEEE-ETTEEEEESC
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455554 4889999985
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=78.54 E-value=37 Score=30.47 Aligned_cols=271 Identities=10% Similarity=0.100 Sum_probs=124.1
Q ss_pred cccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccc-eeEEEecCCcEEEEeCCCCCc
Q 011798 15 DNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHE-HTAAVASDGTLFTWGANEFGQ 93 (477)
Q Consensus 15 ~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~G~vy~wG~n~~gq 93 (477)
+++..||++++++......+..... .......... ....|..++.... ..++...+|.|..|-......
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIP-RHARQINTLN---------HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEEC---------CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred EEECCCCCEEEeecCCCcEeccccC-Cccccceecc---------CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 4889999999988754433322111 1000000111 2334555554332 233333478888886543211
Q ss_pred CCCCCCcCcccccc-cc-cccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEE
Q 011798 94 LGDGTEEGRKHPEK-VK-QLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQ 171 (477)
Q Consensus 94 LG~~~~~~~~~p~~-v~-~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~ 171 (477)
. .+.. +. .-....|..++...+...+++.. .++.+++|-....... ...........|..
T Consensus 85 ~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~--~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 K---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-------EASTLSIWDLAAPTPR--IKAELTSSAPACYA 146 (337)
T ss_dssp C---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEE-------SSSEEEEEECCCC--E--EEEEEECSSSCEEE
T ss_pred e---------eeeecccccCCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCCcc--eeeecccCCCceEE
Confidence 0 0100 00 01233465565544332222211 1788999976543311 11111122334655
Q ss_pred EecC--CceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecC--CceEEEEeeCC
Q 011798 172 VSCG--SVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCG--EYHSAAVSENG 247 (477)
Q Consensus 172 vs~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G--~~~s~~lt~~g 247 (477)
++.. ..+.+....+|.|+.|-.... +.+..+. .....|..++.. ....+..+.+|
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~---------------~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ---------------TLVRQFQ------GHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT---------------EEEEEEC------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC---------------ceeeeee------cccCceEEEEECCCCCEEEEEecCC
Confidence 5543 344555667888888853221 1111111 012346666553 33444556788
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEc--cCceEEEEecCCcEEEEeCCCCCCCCCCCCCCccc
Q 011798 248 EVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVAC--GGVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFS 325 (477)
Q Consensus 248 ~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~ 325 (477)
.|+.|-...... ...+. . ...+..++. .....++-..+|.|+.|-.......
T Consensus 206 ~i~~~d~~~~~~--------------~~~~~-~-~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---------- 259 (337)
T 1gxr_A 206 TVRSWDLREGRQ--------------LQQHD-F-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---------- 259 (337)
T ss_dssp EEEEEETTTTEE--------------EEEEE-C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----------
T ss_pred cEEEEECCCCce--------------Eeeec-C-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----------
Confidence 999996432110 01111 1 123444443 2334444566788888864321100
Q ss_pred cCCCCCCccccccceeecCCCeEEEEeCC--ceeEEEEeCCcEEEEeCCC
Q 011798 326 LIPNESDTYFRNIPILVVPNGVQLVACGH--SHTLVYMRDGRIHGWGYNS 373 (477)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~v~~i~~G~--~h~~~l~~~g~v~~wG~n~ 373 (477)
........|..++... ...+....+|.|+.|-...
T Consensus 260 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 260 -------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp -------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred -------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 0001123455555543 3344445788899996543
No 26
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=78.37 E-value=6.4 Score=36.08 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=10.6
Q ss_pred ccCCCCcEEEEeCC
Q 011798 16 NIPAKSAIYVWGYN 29 (477)
Q Consensus 16 ~l~~~g~v~~wG~n 29 (477)
+...+++||++|-.
T Consensus 20 ~~~~~~~i~v~GG~ 33 (308)
T 1zgk_A 20 APKVGRLIYTAGGY 33 (308)
T ss_dssp -CCCCCCEEEECCB
T ss_pred ccCCCCEEEEEeCc
Confidence 66778899999954
No 27
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.37 E-value=55 Score=30.77 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=80.9
Q ss_pred EEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCc
Q 011798 64 WLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSR 143 (477)
Q Consensus 64 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~ 143 (477)
+..++-...+.++...+|.|+.|-... ++ ....+.......|..++...+...+++.. .+|.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~-~~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-------~dg~ 157 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADS-GS----------VSALAETDESTYVASVKWSHDGSFLSVGL-------GNGL 157 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTT-CC----------EEEEEECCTTCCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCC-Cc----------EeEeeecCCCCCEEEEEECCCCCEEEEEC-------CCCe
Confidence 334665567788888999999997642 11 01111111234466665443322222211 1888
Q ss_pred EEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccccccc
Q 011798 144 LWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE 223 (477)
Q Consensus 144 v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~ 223 (477)
+.+|-....... .........|..++......+.-..+|.|+.|-.....+ .+..+.
T Consensus 158 i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~----- 214 (401)
T 4aez_A 158 VDIYDVESQTKL----RTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH--------------QIGTLQ----- 214 (401)
T ss_dssp EEEEETTTCCEE----EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC--------------EEEEEE-----
T ss_pred EEEEECcCCeEE----EEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc--------------eeeEEc-----
Confidence 999976543221 111133456778877666777778899999996432111 111110
Q ss_pred CccCCceEEEecC--CceEEEEeeCCcEEEEeCC
Q 011798 224 APELEKITQVSCG--EYHSAAVSENGEVYTWGLG 255 (477)
Q Consensus 224 ~~~~~~i~~i~~G--~~~s~~lt~~g~v~~wG~n 255 (477)
.....|..++.. ..+.+.-+.+|.|+.|-..
T Consensus 215 -~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 215 -GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 012346666553 3344445678999999653
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=74.02 E-value=47 Score=29.39 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=95.3
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEee---CCceeEEEeccCCCC
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISC---GAHCTAAIAEPREND 136 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~---g~~~s~~l~~~~~~~ 136 (477)
....|..++......+.-..+|.|+.|-. ++ +..........+..+.. .....+.-..
T Consensus 103 ~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----- 163 (313)
T 3odt_A 103 HQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS-----------LVYNLQAHNASVWDAKVVSFSENKFLTASA----- 163 (313)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEET---TE-----------EEEEEECCSSCEEEEEEEETTTTEEEEEET-----
T ss_pred cccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc-----------EEEecccCCCceeEEEEccCCCCEEEEEEC-----
Confidence 34567888886777777788999999951 11 11111111233444432 3333333343
Q ss_pred CccccCcEEEecCCCCCCCCceeecC-CCCCCcEEEEecCC-ceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeee
Q 011798 137 GTISTSRLWVWGQNQGSNFPRLFWGA-FTPNTIICQVSCGS-VHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVI 214 (477)
Q Consensus 137 ~~~~~g~v~~wG~~~~~~~~~~~~~~-~~~~~~i~~vs~G~-~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i 214 (477)
++.+..|-.. ...... ......|..++... ...++...+|.|+.|-.... ..+
T Consensus 164 ----d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~---------------~~~ 218 (313)
T 3odt_A 164 ----DKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG---------------DVL 218 (313)
T ss_dssp ----TSCEEEEETT------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC---------------CEE
T ss_pred ----CCCEEEEecC------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch---------------hhh
Confidence 8889999621 111111 11234455555432 23556677888888854321 111
Q ss_pred eccccccccCccCCceEEEecCCc-eEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCc
Q 011798 215 KGYAKFLDEAPELEKITQVSCGEY-HSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV 293 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~i~~G~~-~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~ 293 (477)
..+. .....|..++.... ..++...+|.|+.|-.... .+..........|..++.-..
T Consensus 219 ~~~~------~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 219 RTYE------GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---------------SLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp EEEE------CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------------CEEEEEECSSSCEEEEEECTT
T ss_pred hhhh------cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------------ceeEEEeccCceEEEEEEccC
Confidence 1111 01235666665433 4455567889999954221 111111222234666664322
Q ss_pred -eEEEEecCCcEEEEeCCC
Q 011798 294 -HSCALTSKGALYAWGGSQ 311 (477)
Q Consensus 294 -h~~~lt~~G~vy~wG~n~ 311 (477)
..++-..+|.|+.|-...
T Consensus 278 ~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 278 GDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SCEEEEETTSCEEEEESCG
T ss_pred CCEEEEeCCCcEEEEeCCC
Confidence 355567889999997543
No 29
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=73.97 E-value=26 Score=31.61 Aligned_cols=52 Identities=17% Similarity=0.002 Sum_probs=25.4
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec----CCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC----GSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~----G~~~~~~lt~~G~vy~wG~ 193 (477)
++++|+.|-.........+...-....+...+.. -..|++++. ++++|.+|-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 214 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGG 214 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeC
Confidence 7899999864432211111111111223333321 124555444 789999984
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=69.92 E-value=70 Score=29.61 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=35.5
Q ss_pred cceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC---CceeEEEecCCcEEE
Q 011798 114 EFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG---SVHVVALSECGLLQA 190 (477)
Q Consensus 114 ~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G---~~~~~~lt~~G~vy~ 190 (477)
..|..++...+...+++.. .++.|.+|-..... ...........|..|+.. ....+....||.|..
T Consensus 140 ~~V~~v~~spdg~~l~sgs-------~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGG-------KDFSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp SCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred CCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 3466666544433333221 17889999654322 111111223456666653 234455667888988
Q ss_pred ee
Q 011798 191 WG 192 (477)
Q Consensus 191 wG 192 (477)
|=
T Consensus 209 wd 210 (357)
T 4g56_B 209 WD 210 (357)
T ss_dssp CC
T ss_pred EE
Confidence 83
No 31
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=67.59 E-value=46 Score=29.99 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=12.1
Q ss_pred ceeEEEecCCcEEEEeCC
Q 011798 72 EHTAAVASDGTLFTWGAN 89 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~n 89 (477)
.|++++ -+++||++|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 455555 47899999864
No 32
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=67.27 E-value=70 Score=28.59 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=25.8
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec---C-CceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC---G-SVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~---G-~~~~~~lt~~G~vy~wG~ 193 (477)
++++|++|-.........+...-....+...+.. . ..|++++. ++++|.+|-
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 7899999865433211111111111223333321 2 24555443 789999984
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=65.93 E-value=78 Score=28.65 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=58.8
Q ss_pred CcEEEEEcccc------eeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCC---ceeEEEecc
Q 011798 62 SRWLDIACGHE------HTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGA---HCTAAIAEP 132 (477)
Q Consensus 62 ~~i~~i~~G~~------h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~l~~~ 132 (477)
..|..++.... ..+.-..+|.|..|-.... ++ ...+. -....|..++... ...+.-..
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~----------~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~- 136 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-QC----------IKHYV-GHGNAINELKFHPRDPNLLLSVSK- 136 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-CE----------EEEEE-SCCSCEEEEEECSSCTTEEEEEET-
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-eE----------eeeec-CCCCcEEEEEECCCCCCEEEEEeC-
Confidence 45666665433 4555567899999964321 10 01111 1234566666543 22333333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC--CceeEEEecCCcEEEeecC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG--SVHVVALSECGLLQAWGYN 194 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~vy~wG~n 194 (477)
++.|++|-........ ...........|..++.. ..+.+....+|.|+.|-..
T Consensus 137 --------dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 137 --------DHALRLWNIQTDTLVA-IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp --------TSCEEEEETTTTEEEE-EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred --------CCeEEEEEeecCeEEE-EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 8899999765432111 110012234567777764 3455556678999999644
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=65.80 E-value=78 Score=28.62 Aligned_cols=149 Identities=9% Similarity=0.003 Sum_probs=78.6
Q ss_pred ccceEEEeeCCc----eeEEEeccCCCCCccccCcEEEecCCCCCCCC-ceeecCCCCCCcEEEEecC--CceeEEEecC
Q 011798 113 SEFVKSISCGAH----CTAAIAEPRENDGTISTSRLWVWGQNQGSNFP-RLFWGAFTPNTIICQVSCG--SVHVVALSEC 185 (477)
Q Consensus 113 ~~~i~~i~~g~~----~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~-~~~~~~~~~~~~i~~vs~G--~~~~~~lt~~ 185 (477)
...|..++.... ..++... .+|.|.+|-........ .... .....|..++.. ....+....+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS--------WANDVRCWEVQDSGQTIPKAQQ---MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE--------TTSEEEEEEECTTSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEEC--------CCCcEEEEEcCCCCceeEEEec---cccCCEEEEEECcCCCEEEEEcCC
Confidence 456777776665 2222222 18899999876533222 1111 123456666654 3355566778
Q ss_pred CcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEec--CCc--eEEEEeeCCcEEEEeCCCCCCCC
Q 011798 186 GLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSC--GEY--HSAAVSENGEVYTWGLGSVGQLG 261 (477)
Q Consensus 186 G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~--G~~--~s~~lt~~g~v~~wG~n~~gqlg 261 (477)
|.|..|-.... + .+... .....|..++. ... ..+.-..+|.|+.|=......
T Consensus 108 g~v~iwd~~~~-~--------------~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 163 (368)
T 3mmy_A 108 KTAKMWDLSSN-Q--------------AIQIA-------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-- 163 (368)
T ss_dssp SEEEEEETTTT-E--------------EEEEE-------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--
T ss_pred CcEEEEEcCCC-C--------------ceeec-------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--
Confidence 88999854321 1 11100 11235666664 322 234445689999995422110
Q ss_pred CCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeCC
Q 011798 262 HCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGGS 310 (477)
Q Consensus 262 ~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 310 (477)
...+. .. ..+..+..-....++.+.++.++.|-..
T Consensus 164 ------------~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 ------------MMVLQ-LP-ERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp ------------SEEEE-CS-SCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred ------------EEEEe-cC-CCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 01111 11 1345555555667777888999999754
No 35
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=65.53 E-value=85 Score=28.95 Aligned_cols=217 Identities=11% Similarity=0.075 Sum_probs=99.3
Q ss_pred CCCcEEEEEccc---ceeEEEecCCcEEEEeCCCCCcCCCCCCcC-cccccccccccccceEEEeeCC---ceeEEEecc
Q 011798 60 ANSRWLDIACGH---EHTAAVASDGTLFTWGANEFGQLGDGTEEG-RKHPEKVKQLQSEFVKSISCGA---HCTAAIAEP 132 (477)
Q Consensus 60 ~~~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~g~---~~s~~l~~~ 132 (477)
....|..++... ...+.-..+|.|..|-.........-.... ...+..........|..++... ...+.-..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~- 120 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF- 120 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET-
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC-
Confidence 345677777754 444555678999999765322111000000 0000000011234566666433 23333333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC-----ceeEEEecCCcEEEeecCCCCCCcCCCCCCC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS-----VHVVALSECGLLQAWGYNEYGQLGRGITCEG 207 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~-----~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 207 (477)
++.+.+|-.......... .....+..+.... ...++-..+|.|+.|-......
T Consensus 121 --------d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--------- 178 (408)
T 4a11_B 121 --------DKTLKVWDTNTLQTADVF-----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--------- 178 (408)
T ss_dssp --------TSEEEEEETTTTEEEEEE-----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---------
T ss_pred --------CCeEEEeeCCCCccceec-----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---------
Confidence 888999976543211111 1123344444432 1455567788999985432111
Q ss_pred CCCCeeeeccccccccCccCCceEEEecCCce---EEEEeeCCcEEEEeCCCCCCCCC-CCCCCCCccccceeeeecCCc
Q 011798 208 LQGPRVIKGYAKFLDEAPELEKITQVSCGEYH---SAAVSENGEVYTWGLGSVGQLGH-CSLQSGDKELLPRRVVALDGI 283 (477)
Q Consensus 208 ~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~---s~~lt~~g~v~~wG~n~~gqlg~-~~~~~~~~~~~p~~i~~~~~~ 283 (477)
...+. .....|..++..... .+.-..+|.|+.|-.......-. -..........+.........
T Consensus 179 ---~~~~~---------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 179 ---SHILQ---------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp ---CEEEC---------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred ---eeeec---------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 11111 012356666654332 44456789999997643321100 000000000000000011123
Q ss_pred eEEEEEcc--CceEEEEecCCcEEEEeCCC
Q 011798 284 FIKDVACG--GVHSCALTSKGALYAWGGSQ 311 (477)
Q Consensus 284 ~i~~i~~G--~~h~~~lt~~G~vy~wG~n~ 311 (477)
.|..++.. ..+.+....+|.|+.|-...
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 46666553 33555567889999998654
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=59.94 E-value=94 Score=27.62 Aligned_cols=200 Identities=12% Similarity=0.128 Sum_probs=97.6
Q ss_pred EEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEE
Q 011798 67 IACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWV 146 (477)
Q Consensus 67 i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~ 146 (477)
+..+.-..++++.||++++.+......+...... ...+.... -....|..++...+...+++. .++.+.+
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~--------~dg~i~i 76 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTG--------GKGCVKV 76 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEECSSSSEEEEE--------CBSEEEE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEEecCCcEEEEc--------CCCeEEE
Confidence 4445567788999999998887543332211111 01111111 123345566554443333332 2788899
Q ss_pred ecCCCCCCCCceee-cCCCCCCcEEEEecCC--ceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccccccc
Q 011798 147 WGQNQGSNFPRLFW-GAFTPNTIICQVSCGS--VHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDE 223 (477)
Q Consensus 147 wG~~~~~~~~~~~~-~~~~~~~~i~~vs~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~ 223 (477)
|-............ ........|..++... ...+.-..+|.|+.|-..... +.....+.
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------------~~~~~~~~----- 138 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-------------PRIKAELT----- 138 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------EEEEEEE-----
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-------------cceeeecc-----
Confidence 97765443322211 1112345566666653 334455678888888532210 11111110
Q ss_pred CccCCceEEEecC--CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEcc--CceEEEEe
Q 011798 224 APELEKITQVSCG--EYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACG--GVHSCALT 299 (477)
Q Consensus 224 ~~~~~~i~~i~~G--~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt 299 (477)
.....|..++.. ..+.+.-+.+|.|+.|-..... ....+. .....|..++.. ....+...
T Consensus 139 -~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 202 (337)
T 1gxr_A 139 -SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--------------LVRQFQ-GHTDGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp -CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred -cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--------------eeeeee-cccCceEEEEECCCCCEEEEEe
Confidence 112345555543 3344555678899998643210 011111 112345555543 33445556
Q ss_pred cCCcEEEEeCC
Q 011798 300 SKGALYAWGGS 310 (477)
Q Consensus 300 ~~G~vy~wG~n 310 (477)
.+|.|+.|-..
T Consensus 203 ~dg~i~~~d~~ 213 (337)
T 1gxr_A 203 LDNTVRSWDLR 213 (337)
T ss_dssp TTSEEEEEETT
T ss_pred cCCcEEEEECC
Confidence 78899999743
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=59.91 E-value=1e+02 Score=27.99 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCcEEEEEcccce--eEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccc--cccceEEEeeC----CceeEEEecc
Q 011798 61 NSRWLDIACGHEH--TAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL--QSEFVKSISCG----AHCTAAIAEP 132 (477)
Q Consensus 61 ~~~i~~i~~G~~h--~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~--~~~~i~~i~~g----~~~s~~l~~~ 132 (477)
...|..++..... .+.-..||.|+.|-.... ....+..+ ....|..++.. ....+.-..
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~- 77 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY- 77 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-
Confidence 3457777655433 333346888988865310 01111111 22346666643 222333333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC----ceeEEEecCCcEEEeecC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS----VHVVALSECGLLQAWGYN 194 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~----~~~~~lt~~G~vy~wG~n 194 (477)
|+.|.+|-....... ...........|..++... ...+....+|.|..|-..
T Consensus 78 --------dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 78 --------DGKVLIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp --------TSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------CCEEEEEEcCCCcee--EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 788999965443210 1111112234577776653 345666778989888543
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=58.90 E-value=2.2e+02 Score=31.44 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=15.9
Q ss_pred ceEEEecCCc--eEEEEeeCCcEEEEeCC
Q 011798 229 KITQVSCGEY--HSAAVSENGEVYTWGLG 255 (477)
Q Consensus 229 ~i~~i~~G~~--~s~~lt~~g~v~~wG~n 255 (477)
.|..++.... ..+.-+.+|.|+.|-..
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESS
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 4666555433 33334568888888654
No 39
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=56.94 E-value=62 Score=29.27 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=11.4
Q ss_pred ceeEEEecCCcEEEeec
Q 011798 177 VHVVALSECGLLQAWGY 193 (477)
Q Consensus 177 ~~~~~lt~~G~vy~wG~ 193 (477)
.|++++ -++++|.+|-
T Consensus 141 ~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ceeEEE-ECCEEEEEeC
Confidence 455554 6789999984
No 40
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=53.58 E-value=40 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=11.5
Q ss_pred ceeEEEecCCcEEEEeC
Q 011798 72 EHTAAVASDGTLFTWGA 88 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~ 88 (477)
.|++++. +|+||++|-
T Consensus 114 ~~~~~~~-~~~iyv~GG 129 (308)
T 1zgk_A 114 RIGVGVI-DGHIYAVGG 129 (308)
T ss_dssp TCEEEEE-TTEEEEECC
T ss_pred ccEEEEE-CCEEEEEcC
Confidence 4555554 789999985
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=52.86 E-value=1.4e+02 Score=27.43 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=43.5
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCc--eeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSV--HVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYA 218 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~ 218 (477)
+|.|.+|-................-...|..|+...+ ..+.-..+|.|..|-.+. ...+..+.
T Consensus 114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~---------------~~~~~~~~ 178 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---------------KAVLKSYN 178 (357)
T ss_dssp TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---------------TEEEEEEC
T ss_pred CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC---------------CcEEEEEc
Confidence 7889999654433322211111122345666665433 344456788888884321 11111111
Q ss_pred cccccCccCCceEEEecC---CceEEEEeeCCcEEEEeC
Q 011798 219 KFLDEAPELEKITQVSCG---EYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 219 ~~~~~~~~~~~i~~i~~G---~~~s~~lt~~g~v~~wG~ 254 (477)
.....|..|+.. ....+....+|.|..|=.
T Consensus 179 ------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 179 ------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp ------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred ------CCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 112356666643 233445567899999843
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=50.57 E-value=1.5e+02 Score=27.16 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred ccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccC-CCCCCCcEEEEEccc-ceeEEEecCCcEEEEeCCCCCc
Q 011798 16 NIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGC-PAGANSRWLDIACGH-EHTAAVASDGTLFTWGANEFGQ 93 (477)
Q Consensus 16 ~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~-~~~~~~~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gq 93 (477)
+...||++.+-|++..+++-.+.. ..+..+...+...... .......|..|+... ...+.-..||.|..|-......
T Consensus 37 ~fs~dG~~l~~~sd~~~r~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~ 115 (344)
T 4gqb_B 37 RYRSDGALLLGASSLSGRCWAGSL-WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENET 115 (344)
T ss_dssp EECTTSCEEEEEECCSSSCCCEEE-EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSS
T ss_pred EECCCCCEEEEEeCCceEEeecee-eeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCc
Confidence 568899998888776665542110 0011111111100000 000123467776543 3444556789999996542111
Q ss_pred CCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEe
Q 011798 94 LGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVS 173 (477)
Q Consensus 94 LG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs 173 (477)
+ ........-....|..++...+...+++.. .|+.|.+|-..... .......-...|..++
T Consensus 116 ~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i~iwd~~~~~----~~~~~~~h~~~V~~~~ 176 (344)
T 4gqb_B 116 L--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICIKVWDLAQQV----VLSSYRAHAAQVTCVA 176 (344)
T ss_dssp C--------EEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE----EEEEECCCSSCEEEEE
T ss_pred e--------eEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCc----EEEEEcCcCCceEEEE
Confidence 0 001100001123466666544433333321 17888999654322 1111112234577776
Q ss_pred cCCc---eeEEEecCCcEEEee
Q 011798 174 CGSV---HVVALSECGLLQAWG 192 (477)
Q Consensus 174 ~G~~---~~~~lt~~G~vy~wG 192 (477)
.... ..+.-..||.|..|=
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd 198 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWD 198 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEE
T ss_pred ecCCCCCceeeecccccccccc
Confidence 6432 233445688898884
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=49.48 E-value=2e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=35.9
Q ss_pred CceEEEecCCc---eEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCc---eEEEEEccC---ceEEEE
Q 011798 228 EKITQVSCGEY---HSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGI---FIKDVACGG---VHSCAL 298 (477)
Q Consensus 228 ~~i~~i~~G~~---~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~---~i~~i~~G~---~h~~~l 298 (477)
..|..++.... ..+.-..+|.|..|-..... ....+.. ... .|..++... ...+.-
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--------------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--------------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--------------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--------------eeeeecc-cCCCCceEEEEEECCCCCCEEEEE
Confidence 34666655433 44555678999999532110 0111111 112 466666543 344445
Q ss_pred ecCCcEEEEeCC
Q 011798 299 TSKGALYAWGGS 310 (477)
Q Consensus 299 t~~G~vy~wG~n 310 (477)
..+|.|+.|-..
T Consensus 226 ~~dg~i~vwd~~ 237 (615)
T 1pgu_A 226 GSDRKISCFDGK 237 (615)
T ss_dssp ETTCCEEEEETT
T ss_pred eCCCeEEEEECC
Confidence 678999999753
No 44
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=48.69 E-value=1.3e+02 Score=28.62 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=41.9
Q ss_pred eEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEee
Q 011798 116 VKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWG 192 (477)
Q Consensus 116 i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG 192 (477)
|.++++ ....+++.. ++.|..|-.....+..... .+ ...+.++.+-....++++.+|.|+.|-
T Consensus 90 V~~l~f-d~~~L~v~~---------~~~l~v~dv~sl~~~~~~~--~~--~~~v~~i~~~~p~~av~~~dG~L~v~d 152 (388)
T 1xip_A 90 VIFVCF-HGDQVLVST---------RNALYSLDLEELSEFRTVT--SF--EKPVFQLKNVNNTLVILNSVNDLSALD 152 (388)
T ss_dssp EEEEEE-ETTEEEEEE---------SSEEEEEESSSTTCEEEEE--EC--SSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred eeEEEE-CCCEEEEEc---------CCcEEEEEchhhhccCccc--ee--ecceeeEEecCCCEEEEECCCCEEEEE
Confidence 888888 666666665 8889999765544322111 11 223566666655678889999999994
No 45
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=48.46 E-value=1.5e+02 Score=26.55 Aligned_cols=150 Identities=9% Similarity=0.068 Sum_probs=79.5
Q ss_pred CCCcEEEEEcccc-----eeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCce--eEEEecc
Q 011798 60 ANSRWLDIACGHE-----HTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHC--TAAIAEP 132 (477)
Q Consensus 60 ~~~~i~~i~~G~~-----h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~--s~~l~~~ 132 (477)
....|..|+.... ..+.-..||.|..|-....++. ....+. -....|..++...+. .+.-..
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~- 106 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASC- 106 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEE-ECSSCEEEEEECTTSSEEEEEET-
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEec-cccCCEEEEEECcCCCEEEEEcC-
Confidence 4567888887764 3444466899999976432210 001111 123446666654333 222333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEec--CC--ceeEEEecCCcEEEeecCCCCCCcCCCCCCCC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC--GS--VHVVALSECGLLQAWGYNEYGQLGRGITCEGL 208 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~--G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 208 (477)
++.|.+|-........ .......|..++. .. ...+.-..+|.|+.|-......
T Consensus 107 --------dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------- 163 (368)
T 3mmy_A 107 --------DKTAKMWDLSSNQAIQ-----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP---------- 163 (368)
T ss_dssp --------TSEEEEEETTTTEEEE-----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC----------
T ss_pred --------CCcEEEEEcCCCCcee-----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE----------
Confidence 8889999765432111 1123445677764 32 2344556688898884322110
Q ss_pred CCCeeeeccccccccCccCCceEEEecCCceEEEEeeCCcEEEEeCC
Q 011798 209 QGPRVIKGYAKFLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLG 255 (477)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n 255 (477)
...+. ....+..+..-....++.+.++.+..|-..
T Consensus 164 --~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 --MMVLQ----------LPERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --SEEEE----------CSSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --EEEEe----------cCCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 11111 012455555555667777888999998653
No 46
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=48.21 E-value=1.5e+02 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=12.3
Q ss_pred CceEEEEecCCcEEEEeC
Q 011798 292 GVHSCALTSKGALYAWGG 309 (477)
Q Consensus 292 ~~h~~~lt~~G~vy~wG~ 309 (477)
..|++++. +++||..|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666655 789999984
No 47
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=45.39 E-value=2.8e+02 Score=28.71 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=57.3
Q ss_pred CCcEEEEEcccc--eeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccc--cccceEEEeeCC----ceeEEEecc
Q 011798 61 NSRWLDIACGHE--HTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQL--QSEFVKSISCGA----HCTAAIAEP 132 (477)
Q Consensus 61 ~~~i~~i~~G~~--h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~--~~~~i~~i~~g~----~~s~~l~~~ 132 (477)
...|..++.... ..+.-..||.|..|-.... ....+..+ ....|..++... ...+.-..
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~- 75 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY- 75 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeC-
Confidence 345666665432 3344456899999954310 01111111 123566666532 22233333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC----ceeEEEecCCcEEEeecC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS----VHVVALSECGLLQAWGYN 194 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~----~~~~~lt~~G~vy~wG~n 194 (477)
||.|++|-...... ............|..++... ...+..+.+|.|..|-..
T Consensus 76 --------Dg~I~vwd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 76 --------DGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp --------TSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------CCeEEEEECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 88999997554221 01111122344677776653 356666788999998643
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.15 E-value=1.9e+02 Score=26.80 Aligned_cols=112 Identities=9% Similarity=0.061 Sum_probs=57.4
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCcc
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTI 139 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~ 139 (477)
....|..++......+.-..+|.|+.|-....++ +..........|..++.......+++..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~------- 236 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-----------QIGTLQGHSSEVCGLAWRSDGLQLASGG------- 236 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEE-------
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-----------eeeEEcCCCCCeeEEEEcCCCCEEEEEe-------
Confidence 3456888888777777778899999997542111 1111111223455555443322222221
Q ss_pred ccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC--ceeEEEe---cCCcEEEeec
Q 011798 140 STSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS--VHVVALS---ECGLLQAWGY 193 (477)
Q Consensus 140 ~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~--~~~~~lt---~~G~vy~wG~ 193 (477)
.++.|.+|-...... ..........|..++... .+.++.. .+|.|+.|-.
T Consensus 237 ~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 237 NDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp TTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred CCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 178899997654211 111111233455555432 3333333 4888888853
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=42.79 E-value=1.9e+02 Score=26.05 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=54.1
Q ss_pred CcEEEEEcc--cceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCce--eEEEeccCCCCC
Q 011798 62 SRWLDIACG--HEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHC--TAAIAEPRENDG 137 (477)
Q Consensus 62 ~~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~--s~~l~~~~~~~~ 137 (477)
..|..++.. ....+.-..+|.|+.|-... ++ ..+.....-....|..++..... .+.-..
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------ 116 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RT---------WKPTLVILRINRAARCVRWAPNEKKFAVGSG------ 116 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEET-TE---------EEEEEECCCCSSCEEEEEECTTSSEEEEEET------
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCC-Ce---------eeeeEEeecCCCceeEEEECCCCCEEEEEeC------
Confidence 456666544 33444556678888885421 11 01111101112345555544332 222223
Q ss_pred ccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC--ceeEEEecCCcEEEeec
Q 011798 138 TISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS--VHVVALSECGLLQAWGY 193 (477)
Q Consensus 138 ~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~vy~wG~ 193 (477)
++.+.+|-....................|..++... ...+.-..+|.|+.|-.
T Consensus 117 ---d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 117 ---SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp ---TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ---CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 788888865543321111111112244567766643 34555567899998863
No 50
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=41.71 E-value=3.1e+02 Score=28.29 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCcEEEEEcc----cceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCc----eeEEEecc
Q 011798 61 NSRWLDIACG----HEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH----CTAAIAEP 132 (477)
Q Consensus 61 ~~~i~~i~~G----~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~----~s~~l~~~ 132 (477)
...|..++.. ....+.-..||.|+.|-.... + ..+..........|..++.... ..+.-..
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~---------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~- 121 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS- 121 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c---------ccccccccCCCCCeEEEEECCCCCCCEEEEEeC-
Confidence 3567777764 345556677899999965321 0 0011111112345666665543 2333333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC---------------ceeEEEecCCcEEEeecCCCC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS---------------VHVVALSECGLLQAWGYNEYG 197 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~---------------~~~~~lt~~G~vy~wG~n~~g 197 (477)
+|.|.+|-............. .....|..++... ...+.-..+|.|+.|-.....
T Consensus 122 --------dg~I~vwdl~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 122 --------DGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp --------TSEEEEEECCSSSCCCCEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred --------CCcEEEEEeecCCCcceeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 889999987665433322221 1233466665543 445556678888888532211
Q ss_pred CCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCc-----eEEEEeeCCcEEEEeCCC
Q 011798 198 QLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEY-----HSAAVSENGEVYTWGLGS 256 (477)
Q Consensus 198 qlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~-----~s~~lt~~g~v~~wG~n~ 256 (477)
+ ....+..+. .....|..++.... ..+.-..+|.|+.|-...
T Consensus 192 ~-----------~~~~~~~~~------~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 192 Q-----------TYVLESTLE------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp T-----------EEEEEEEEC------CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred c-----------cceeeeeec------CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 0 001111110 11245777766533 344456789999996543
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=40.27 E-value=2.1e+02 Score=25.77 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=98.4
Q ss_pred CCcEEEEEcc----cceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCc----eeEEEecc
Q 011798 61 NSRWLDIACG----HEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH----CTAAIAEP 132 (477)
Q Consensus 61 ~~~i~~i~~G----~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~----~s~~l~~~ 132 (477)
...|..++.. ....+.-..||.|..|-.... + ..+..........|..++.... ..+....
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~- 123 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS- 123 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-E---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-c---------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-
Confidence 4567777764 345556667899999965421 0 0011111112344666665443 2333333
Q ss_pred CCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC---------------ceeEEEecCCcEEEeecCCCC
Q 011798 133 RENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS---------------VHVVALSECGLLQAWGYNEYG 197 (477)
Q Consensus 133 ~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~---------------~~~~~lt~~G~vy~wG~n~~g 197 (477)
++.+.+|-............. .....|..++... ...+.-..+|.|+.|-.....
T Consensus 124 --------d~~i~v~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 124 --------DGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp --------TSEEEEEECCTTSCCCEEEEE--CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred --------CCcEEEEecCCCCceeeEEec--CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 889999987665433322211 1233466665543 455566778888888432111
Q ss_pred CCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCC-----ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccc
Q 011798 198 QLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGE-----YHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKEL 272 (477)
Q Consensus 198 qlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~-----~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 272 (477)
+ ....+..+. .....|..++... ...+....+|.|..|-.......
T Consensus 194 ~-----------~~~~~~~~~------~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------ 244 (379)
T 3jrp_A 194 Q-----------TYVLESTLE------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP------------ 244 (379)
T ss_dssp T-----------EEEEEEEEC------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC------------
T ss_pred c-----------ceeeEEEEe------cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc------------
Confidence 0 001111110 1123566666553 33444567899999965331100
Q ss_pred cceeeeec--CCceEEEEEcc--CceEEEEecCCcEEEEeCC
Q 011798 273 LPRRVVAL--DGIFIKDVACG--GVHSCALTSKGALYAWGGS 310 (477)
Q Consensus 273 ~p~~i~~~--~~~~i~~i~~G--~~h~~~lt~~G~vy~wG~n 310 (477)
....+... ....|..++.. ..+.++-..+|.|+.|-.+
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 00001010 12235555443 2334445678888888754
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=39.86 E-value=2.5e+02 Score=26.52 Aligned_cols=245 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred EEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccccCc
Q 011798 64 WLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSR 143 (477)
Q Consensus 64 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~ 143 (477)
+..++......+.-..||.|..|-.. ...+.....-....|..++......++... .|+.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~------------~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s--------~dg~ 184 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSI------------NKKFLLQLSGHDGGVWALKYAHGGILVSGS--------TDRT 184 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETT------------TTEEEEEECCCSSCEEEEEECSTTEEEEEE--------TTSC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECC------------CCcEEEEEeCCCcCEEEEEEcCCCEEEEEe--------CCCC
Q ss_pred EEEecCCCCCCCCceeecCCCCCCcEEEEecCC----ceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecccc
Q 011798 144 LWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS----VHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAK 219 (477)
Q Consensus 144 v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~----~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~ 219 (477)
+.+|-.... ............|..++... ...+.-+.+|.|..|-......................+....
T Consensus 185 i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 185 VRVWDIKKG----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp EEEEETTTT----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred EEEEECCCC----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Q ss_pred --ccccCccCCceEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCc--eE
Q 011798 220 --FLDEAPELEKITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV--HS 295 (477)
Q Consensus 220 --~~~~~~~~~~i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--h~ 295 (477)
..........+..++......+.-..+|.|..|-. ....+..........|..++.... ..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV---------------AQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEET---------------TTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEEC---------------CCCcEEEEecCCCCCEEEEEEcCCCCEE
Q ss_pred EEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceeecCCCeEEEEeCCceeEEEEeCCcEEEE
Q 011798 296 CALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGRIHGW 369 (477)
Q Consensus 296 ~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~v~~w 369 (477)
+.-..+|.|+.|-.... ............|..++....+.+.-..||.|..|
T Consensus 326 ~sg~~dg~i~vwd~~~~----------------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENG----------------------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEEETTSCEEEEETTTT----------------------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred EEEeCCCcEEEEECCCC----------------------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEE
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=38.69 E-value=2.9e+02 Score=27.02 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=33.9
Q ss_pred cceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC-CceeEEEecCCcEEEee
Q 011798 114 EFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG-SVHVVALSECGLLQAWG 192 (477)
Q Consensus 114 ~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G-~~~~~~lt~~G~vy~wG 192 (477)
..|..++. .. .+.-.. ++.+.+|-.. ... ......|..++.. ....+....+|.+..|-
T Consensus 340 ~~v~~~~~-~~-l~~~~~---------dg~i~~w~~~-------~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 340 KGITALTV-NP-LISGSY---------DGRIMEWSSS-------SMH--QDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp SCEEEEET-TT-TEEEET---------TSCEEETTTT-------EEE--CCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CCEEEEEe-cC-cEEECC---------CCeEEEEEch-------hhc--CcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 45666666 54 333333 8889998765 111 2234456666664 34455556777777773
No 54
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=35.54 E-value=1e+02 Score=27.86 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=11.7
Q ss_pred eeEEEecCCcEEEEeC
Q 011798 73 HTAAVASDGTLFTWGA 88 (477)
Q Consensus 73 h~~~lt~~G~vy~wG~ 88 (477)
+..+...+++||++|-
T Consensus 49 ~~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGG 64 (318)
T ss_dssp EEEEECSSSCEEEEES
T ss_pred ceEEEEECCEEEEECC
Confidence 3444557899999996
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=34.78 E-value=2.7e+02 Score=25.46 Aligned_cols=286 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred cCCCcccccccCCCCcEEEEeCCCCCCCCCCCCCCccccCccCCCCcccCCCCCCCcEEEEEcccceeEEEecCCcEEEE
Q 011798 7 IGETARPVDNIPAKSAIYVWGYNHSGQTGRKGRERQLRIPKQLPPELFGCPAGANSRWLDIACGHEHTAAVASDGTLFTW 86 (477)
Q Consensus 7 ~~~~~~~~~~l~~~g~v~~wG~n~~GqLG~~~~~~~~~~p~~i~~~~~~~~~~~~~~i~~i~~G~~h~~~lt~~G~vy~w 86 (477)
+...+..++.-..+|.|++|- ..++ ....+.... ....-...+......+....+|.|+.|
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~--~~~~-----------~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN--KTGA-----------LLNVLNFHR------APIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE--TTSC-----------EEEEECCCC------SCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEe--CCCC-----------eeeeccCCC------ccEEEEEECCCCCEEEEEecCCeEEEE
Q ss_pred eCCCCCcCCCCCCcCcccccccccccccc---------------eEEEeeCCceeEEEeccCCCCCccccCcEEEecCCC
Q 011798 87 GANEFGQLGDGTEEGRKHPEKVKQLQSEF---------------VKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQ 151 (477)
Q Consensus 87 G~n~~gqLG~~~~~~~~~p~~v~~~~~~~---------------i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~ 151 (477)
-.. ...+.......... +..++......++... .++.+++|-...
T Consensus 177 d~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~i~~~d~~~ 236 (425)
T 1r5m_A 177 NVI------------SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG--------PKGAIFVYQITE 236 (425)
T ss_dssp ETT------------TTEEEEEECCC---------------CCCBSCCEEEETTEEEEEC--------GGGCEEEEETTC
T ss_pred ECC------------CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc--------CCCeEEEEEcCC
Q ss_pred CCCCCceeecCCCCCCcEEEEecCCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceE
Q 011798 152 GSNFPRLFWGAFTPNTIICQVSCGSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKIT 231 (477)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~~vs~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 231 (477)
. .+............-..++......+....+|.|+.|-......+ .........|.
T Consensus 237 ~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~i~ 293 (425)
T 1r5m_A 237 K--TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ---------------------NCFYGHSQSIV 293 (425)
T ss_dssp S--SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS---------------------EEECCCSSCEE
T ss_pred C--ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc---------------------eEecCCCccEE
Q ss_pred EEecCCc-eEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEcc--CceEEEEecCCcEEEEe
Q 011798 232 QVSCGEY-HSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACG--GVHSCALTSKGALYAWG 308 (477)
Q Consensus 232 ~i~~G~~-~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~wG 308 (477)
.++.... ..+....+|.|+.|-. ....+..........|..++.. ....++-..+|.|+.|-
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~---------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSL---------------KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEET---------------TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEeCCCcEEEEEC---------------CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCccccccceeec--CCCeEEEEeCCceeEEEEeCCcEEEE
Q 011798 309 GSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILVV--PNGVQLVACGHSHTLVYMRDGRIHGW 369 (477)
Q Consensus 309 ~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~G~~h~~~l~~~g~v~~w 369 (477)
..............................+.... ...-..++.-....++...||.|+.|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
No 56
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=34.33 E-value=1.8e+02 Score=23.21 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=59.1
Q ss_pred CCcEEEEecCC-ceeEEEecCCcEEEeecC--CCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecC-CceEE
Q 011798 166 NTIICQVSCGS-VHVVALSECGLLQAWGYN--EYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCG-EYHSA 241 (477)
Q Consensus 166 ~~~i~~vs~G~-~~~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G-~~~s~ 241 (477)
.....++.|-. .+.+-+..||+|-+-... .+..| .+. .....++.|.|- ..+-+
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~~~s~l-------------ei~---------sv~~G~V~L~g~~sg~yL 86 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQF-------------QIS---------PEGNGEVLLKSTETGQYL 86 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTCGGGCE-------------EEE---------EEETTEEEEEETTTTEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCCCceEE-------------EEE---------EccCCEEEEEEecCCEEE
Confidence 45678888865 677888999999765422 11111 111 011346777764 56778
Q ss_pred EEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeec--CCceEEEEEccCceEEEEecCCcEEE
Q 011798 242 AVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVAL--DGIFIKDVACGGVHSCALTSKGALYA 306 (477)
Q Consensus 242 ~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~h~~~lt~~G~vy~ 306 (477)
++..+|+||.--. .. . ...-..+... -..-|+.+..| ..+|++.+|++|+
T Consensus 87 ~mn~~G~l~Gs~~--~t---------~--ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 87 RINPDGTVDGTRD--RS---------D--THIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp EECTTSBEEEECC--TT---------C--GGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred eECCCCCEeeccc--CC---------C--CceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 8999999996421 10 0 1111111111 12223333344 4899999999996
No 57
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.19 E-value=2.5e+02 Score=24.99 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.5
Q ss_pred ceeEEEecCCcEEEEeC
Q 011798 72 EHTAAVASDGTLFTWGA 88 (477)
Q Consensus 72 ~h~~~lt~~G~vy~wG~ 88 (477)
.|++++. +++||++|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 3555554 789999986
No 58
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=33.28 E-value=2.5e+02 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=15.8
Q ss_pred CcEEEEecC-CceeEEEecCCc-EEEeec
Q 011798 167 TIICQVSCG-SVHVVALSECGL-LQAWGY 193 (477)
Q Consensus 167 ~~i~~vs~G-~~~~~~lt~~G~-vy~wG~ 193 (477)
.++.-..++ ....++++.+|+ ++.|+.
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 344444445 455667777887 566654
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=32.73 E-value=2.7e+02 Score=24.82 Aligned_cols=156 Identities=6% Similarity=0.052 Sum_probs=79.2
Q ss_pred CCcEEEEEcc------cceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccc-cccccceEEEeeCCc------eeE
Q 011798 61 NSRWLDIACG------HEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVK-QLQSEFVKSISCGAH------CTA 127 (477)
Q Consensus 61 ~~~i~~i~~G------~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~-~~~~~~i~~i~~g~~------~s~ 127 (477)
...|..|+.- ....++-..+|.|..|-......+. ...... ......|..++.... ..+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR--------LLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE--------EEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE--------eeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 4567777765 4556677778889999654221110 000000 001233544443322 222
Q ss_pred EEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC---ceeEEEecCCcEEEeecCCCCCCcCCCC
Q 011798 128 AIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS---VHVVALSECGLLQAWGYNEYGQLGRGIT 204 (477)
Q Consensus 128 ~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~ 204 (477)
.-.. +|.|.+|-....... .........|..++... ...+.-..+|.|+.|-....
T Consensus 90 ~~~~---------dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------- 148 (366)
T 3k26_A 90 VAGS---------RGIIRIINPITMQCI----KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-------- 148 (366)
T ss_dssp EEET---------TCEEEEECTTTCCEE----EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--------
T ss_pred EecC---------CCEEEEEEchhceEe----eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--------
Confidence 2233 889999976543221 11112345677777643 44555667899999954221
Q ss_pred CCCCCCCeeeeccccccccCccCCceEEEecC--CceEEEEeeCCcEEEEeCC
Q 011798 205 CEGLQGPRVIKGYAKFLDEAPELEKITQVSCG--EYHSAAVSENGEVYTWGLG 255 (477)
Q Consensus 205 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G--~~~s~~lt~~g~v~~wG~n 255 (477)
..+..+.. .......|..++.. ..+.+....+|.|+.|-..
T Consensus 149 -------~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 149 -------TLVAIFGG---VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp -------EEEEEECS---TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred -------eEEEEecc---cccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 11111100 00122456666654 3344455678999999654
No 60
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=30.86 E-value=3.1e+02 Score=24.96 Aligned_cols=111 Identities=15% Similarity=0.243 Sum_probs=54.5
Q ss_pred ceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC--ceeEEEecCCcEEEee
Q 011798 115 FVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS--VHVVALSECGLLQAWG 192 (477)
Q Consensus 115 ~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~vy~wG 192 (477)
.|..++...+..++... .+|.|.+|-................-...|..|+... .+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s--------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVAS--------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEE--------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEE--------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 46666644443333322 2889999976554333222111111234566665543 3444456678888884
Q ss_pred cCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecCCc---eEEEEeeCCcEEEEeC
Q 011798 193 YNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCGEY---HSAAVSENGEVYTWGL 254 (477)
Q Consensus 193 ~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G~~---~s~~lt~~g~v~~wG~ 254 (477)
... .+.+..+. .....|..++.... ..+.-..||.|..|=.
T Consensus 156 ~~~---------------~~~~~~~~------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 156 LAQ---------------QVVLSSYR------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp TTT---------------TEEEEEEC------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCC---------------CcEEEEEc------CcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 321 11121111 01235666665432 2233456899999953
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=30.21 E-value=3.1e+02 Score=24.83 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=78.7
Q ss_pred CCCcEEEEEc---ccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCC---c--eeEEEec
Q 011798 60 ANSRWLDIAC---GHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGA---H--CTAAIAE 131 (477)
Q Consensus 60 ~~~~i~~i~~---G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~--~s~~l~~ 131 (477)
....|..++. +....+.-..+|.|..|-...... ...+. ....+..+.... . ..++-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------ADVFN--FEETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------EEEEE--CSSCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------ceecc--CCCceeeeEeecCCCCCcEEEEEcC
Confidence 4456777776 334556667789999996542110 00011 112233333222 1 2222233
Q ss_pred cCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCCce---eEEEecCCcEEEeecCCCCCCcCCCCCCCC
Q 011798 132 PRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGSVH---VVALSECGLLQAWGYNEYGQLGRGITCEGL 208 (477)
Q Consensus 132 ~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~~~---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 208 (477)
++.+++|-.......... ......|..++..... .+.-..+|.|+.|-.......-........
T Consensus 165 ---------~~~v~~~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 ---------GPKVQLCDLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp ---------SSSEEEEESSSSCCCEEE----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred ---------CCeEEEEeCCCcceeeee----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 889999976543322111 1223457677664332 445677899999965332211000000000
Q ss_pred CCCeeeeccccccccCccCCceEEEecCC--ceEEEEeeCCcEEEEeCCC
Q 011798 209 QGPRVIKGYAKFLDEAPELEKITQVSCGE--YHSAAVSENGEVYTWGLGS 256 (477)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~i~~i~~G~--~~s~~lt~~g~v~~wG~n~ 256 (477)
..... . ..........|..++... .+.+....+|.|+.|-...
T Consensus 232 ~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 232 KKSQA---V--ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CSCCC---T--TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccee---e--ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 00000 0 000011224566666543 3455566789999997644
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.00 E-value=5e+02 Score=26.53 Aligned_cols=110 Identities=7% Similarity=0.080 Sum_probs=55.1
Q ss_pred CcEEEEEc--ccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCcc
Q 011798 62 SRWLDIAC--GHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTI 139 (477)
Q Consensus 62 ~~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~ 139 (477)
..|..++. .....+.-..+|.|+.|-...... ...+. .....|..++.......+++..
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~------- 116 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFE-AHPDYIRSIAVHPTKPYVLSGS------- 116 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSEEEEEE-------
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEe-cCCCCEEEEEEeCCCCEEEEEc-------
Confidence 34555543 334455666789999996543211 01111 1223455555444332222221
Q ss_pred ccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecCC---ceeEEEecCCcEEEeec
Q 011798 140 STSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCGS---VHVVALSECGLLQAWGY 193 (477)
Q Consensus 140 ~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G~---~~~~~lt~~G~vy~wG~ 193 (477)
.++.+.+|-........... ......|..++... ...+....+|.|+.|-.
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTF---EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEE---ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred CCCEEEEEECCCCceEEEEE---cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 17888888654332211111 12234566666543 34555677899999954
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=27.73 E-value=3e+02 Score=23.79 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=107.9
Q ss_pred cEEEEEc--ccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCceeEEEeccCCCCCccc
Q 011798 63 RWLDIAC--GHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTIS 140 (477)
Q Consensus 63 ~i~~i~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~ 140 (477)
.|..++. .....+.-..+|.|..|-...... ..+..........|..++......+.-..
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~--------- 122 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSW--------- 122 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEET---------
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeC---------
Confidence 3444443 334445556677777775432110 01111111123456666664444444444
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec---CCceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeecc
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC---GSVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGY 217 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~---G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~ 217 (477)
++.+..|-. .............+..+.. .....+....+|.|+.|-.. ..+..+
T Consensus 123 d~~i~~~d~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------------~~~~~~ 179 (313)
T 3odt_A 123 DKTAKVWKE------GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----------------KVIKTF 179 (313)
T ss_dssp TSEEEEEET------TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----------------EEEEEE
T ss_pred CCCEEEEcC------CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----------------ceEEEE
Confidence 889999961 1111111122344555543 45566667788888888410 111111
Q ss_pred ccccccCccCCceEEEecC-CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCc-eE
Q 011798 218 AKFLDEAPELEKITQVSCG-EYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGV-HS 295 (477)
Q Consensus 218 ~~~~~~~~~~~~i~~i~~G-~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-h~ 295 (477)
.. .....|..++.. ....++...+|.|+.|-..... +..........|..++.... ..
T Consensus 180 ~~-----~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~l 239 (313)
T 3odt_A 180 SG-----IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD---------------VLRTYEGHESFVYCIKLLPNGDI 239 (313)
T ss_dssp CS-----SCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC---------------EEEEEECCSSCEEEEEECTTSCE
T ss_pred ec-----cCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh---------------hhhhhhcCCceEEEEEEecCCCE
Confidence 00 011344444442 2224455678889998653211 11111112234666654432 45
Q ss_pred EEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCCCccccccceee-cCCCeEEEEeCCc-eeEEEEeCCcEEEEeCC
Q 011798 296 CALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNESDTYFRNIPILV-VPNGVQLVACGHS-HTLVYMRDGRIHGWGYN 372 (477)
Q Consensus 296 ~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~G~~-h~~~l~~~g~v~~wG~n 372 (477)
++-..+|.|+.|-.... ++ ..... ....|..++.-.+ ..++...||.|+.|=..
T Consensus 240 ~~~~~dg~v~iwd~~~~-~~----------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENG-SL----------------------KQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEETTSEEEEECTTTC-CE----------------------EEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEecCCEEEEEECCCC-ce----------------------eEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 55667899999964321 00 00010 1234666655433 24455678899999643
No 64
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.58 E-value=4.3e+02 Score=24.91 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=41.4
Q ss_pred eEEEecCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEccCceEEEEecCCcEEEEeC
Q 011798 230 ITQVSCGEYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHSCALTSKGALYAWGG 309 (477)
Q Consensus 230 i~~i~~G~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~ 309 (477)
|.+++. ....+++..+|.|..|=.....+. ..+..+. ..+.++.+-....++++.+|.|+.|--
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~--------------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF--------------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE--------------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc--------------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 888888 667777778899999865433211 1111111 234555555545777899999999964
Q ss_pred C
Q 011798 310 S 310 (477)
Q Consensus 310 n 310 (477)
.
T Consensus 154 ~ 154 (388)
T 1xip_A 154 R 154 (388)
T ss_dssp T
T ss_pred c
Confidence 3
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=23.60 E-value=4.1e+02 Score=24.01 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCCcEEEEEcccceeEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCCc---------eeEEEe
Q 011798 60 ANSRWLDIACGHEHTAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGAH---------CTAAIA 130 (477)
Q Consensus 60 ~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~~---------~s~~l~ 130 (477)
-...|..|+......+.-..||.|+.|-...... .........+. .....|..++.... ..+...
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 3457888888776666677899999997643210 00000011111 12234555554332 222223
Q ss_pred ccCCCCCccccCcEEEecCCCCCCCCceeecCCC-C-----CCcEEEEecC------Cce-eEEEecCCcEEEeecC
Q 011798 131 EPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFT-P-----NTIICQVSCG------SVH-VVALSECGLLQAWGYN 194 (477)
Q Consensus 131 ~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~-~-----~~~i~~vs~G------~~~-~~~lt~~G~vy~wG~n 194 (477)
. ++.|++|-..............+. . ...|..++.. ..+ .+....+|.|+.|-..
T Consensus 89 ~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 89 F---------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp T---------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred C---------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 3 788999875543321111011111 1 2556666655 344 5555678999888543
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=23.45 E-value=4.6e+02 Score=24.47 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=69.4
Q ss_pred cCcEEEecCCCCCCCCce---eecCCCCCCcEEEEecC---CceeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeee
Q 011798 141 TSRLWVWGQNQGSNFPRL---FWGAFTPNTIICQVSCG---SVHVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVI 214 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~---~~~~~~~~~~i~~vs~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i 214 (477)
+|.|.+|-.......... ..........|..|+.. ....+....+|.|+.|-....... .....+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~---------~~~~~~ 273 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS---------KPSHTV 273 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---------SCSEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---------cceeEe
Confidence 888999987663322111 11111223457777664 334445567999999964432110 011111
Q ss_pred eccccccccCccCCceEEEecCCc---eEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEEEcc
Q 011798 215 KGYAKFLDEAPELEKITQVSCGEY---HSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACG 291 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~i~~G~~---~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G 291 (477)
. .....|..|+.... ..+.-..+|.|..|-....++ |..........|..|+..
T Consensus 274 ~---------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 274 D---------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------------KLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp E---------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEECCSSCEEEEEEC
T ss_pred e---------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------CeEEeecCCCCEEEEEEC
Confidence 1 11134666655422 233445688999997643221 111111122346666654
Q ss_pred C---ceEEEEecCCcEEEEeCCC
Q 011798 292 G---VHSCALTSKGALYAWGGSQ 311 (477)
Q Consensus 292 ~---~h~~~lt~~G~vy~wG~n~ 311 (477)
. ...+.-..+|.|..|-...
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCCEEEEEeCCCcEEEEeCCC
Confidence 3 2344455788999997544
No 67
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=23.40 E-value=3.8e+02 Score=23.50 Aligned_cols=52 Identities=23% Similarity=0.049 Sum_probs=25.1
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEec----CCceeEEEecCCcEEEeec
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSC----GSVHVVALSECGLLQAWGY 193 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~----G~~~~~~lt~~G~vy~wG~ 193 (477)
++++|++|-.........+...-....+...+.. -..|++++. ++++|.+|-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcC
Confidence 7889999865432211111111111222333321 124555554 789999984
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=22.07 E-value=3.9e+02 Score=23.20 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred ccccccccccccceEEEeeCCceeEEEeccCCCCCccccCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC----Cce
Q 011798 103 KHPEKVKQLQSEFVKSISCGAHCTAAIAEPRENDGTISTSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG----SVH 178 (477)
Q Consensus 103 ~~p~~v~~~~~~~i~~i~~g~~~s~~l~~~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G----~~~ 178 (477)
...+.+..-....|..++...+...+++... +|.|.+|-....................|..++.. ...
T Consensus 1 p~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 1 PHMQPFDSGHDDLVHDVVYDFYGRHVATCSS-------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp -CCCCEECCCSSCEEEEEECSSSSEEEEEET-------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE
T ss_pred CCccccCcccccceeEEEEcCCCCEEEEeeC-------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE
Q ss_pred eEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeeeeccccccccCccCCceEEEecC----CceEEEEeeCCcEEEEeC
Q 011798 179 VVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVIKGYAKFLDEAPELEKITQVSCG----EYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 179 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~G----~~~s~~lt~~g~v~~wG~ 254 (477)
.+....||.|..| ..........................|..++.. ....+..+.+|.|+.|=.
T Consensus 74 l~s~~~dg~v~vw------------d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 74 IASASYDKTVKLW------------EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEEETTSCEEEE------------EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEEEcCCCeEEEE------------ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Q ss_pred CCCCCCCCCCCCCCCccccceeeeecCCceEEEEEcc---CceEEEEecCCcEEEEeCCCCCCCCCCCCCCccccCCCCC
Q 011798 255 GSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACG---GVHSCALTSKGALYAWGGSQAGQLGLGPQTRSFSLIPNES 331 (477)
Q Consensus 255 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~ 331 (477)
.....+..-............................ ....++-..++.+..|-....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~------------------- 202 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG------------------- 202 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-------------------
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-------------------
Q ss_pred CccccccceeecCCCeEEEEeCCc------eeEEEEeCCcEEEE
Q 011798 332 DTYFRNIPILVVPNGVQLVACGHS------HTLVYMRDGRIHGW 369 (477)
Q Consensus 332 ~~~~~~~~~~~~~~~v~~i~~G~~------h~~~l~~~g~v~~w 369 (477)
..............|..++.-.+ ..+.-..||.|..|
T Consensus 203 -~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 203 -KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp -CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred -ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=21.25 E-value=4.7e+02 Score=23.78 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=29.7
Q ss_pred cCcEEEecCCCCCCCCceeecCCCCCCcEEEEecC---CceeEEEecCCcEEEeecC
Q 011798 141 TSRLWVWGQNQGSNFPRLFWGAFTPNTIICQVSCG---SVHVVALSECGLLQAWGYN 194 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~~~~~~~~~~~~~i~~vs~G---~~~~~~lt~~G~vy~wG~n 194 (477)
++.|.+|-....................|..++.. ....+.-..+|.|+.|-..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 78999997765322221222222223445555553 3445555678888888543
No 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=20.92 E-value=4.8e+02 Score=23.82 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=75.4
Q ss_pred EEcccceeEEE---ecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCC-c--eeEEEeccCCCCCccc
Q 011798 67 IACGHEHTAAV---ASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGA-H--CTAAIAEPRENDGTIS 140 (477)
Q Consensus 67 i~~G~~h~~~l---t~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~-~--~s~~l~~~~~~~~~~~ 140 (477)
+++......++ ..+|.|+.|-....+++.. ..+. + .-....|..++... . ..+.-..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~~-~-~~h~~~V~~~~~~p~~~~~l~s~s~--------- 102 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVPL-V-CGHTAPVLDIAWCPHNDNVIASGSE--------- 102 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCCC-B-CCCSSCEEEEEECTTCTTEEEEEET---------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCce-E-ecCCCCEEEEEeCCCCCCEEEEEeC---------
Confidence 44555555544 4579999998765444310 0010 1 11234566666543 2 2222233
Q ss_pred cCcEEEecCCCCCCCC---ceeecCCCCCCcEEEEecCCc---eeEEEecCCcEEEeecCCCCCCcCCCCCCCCCCCeee
Q 011798 141 TSRLWVWGQNQGSNFP---RLFWGAFTPNTIICQVSCGSV---HVVALSECGLLQAWGYNEYGQLGRGITCEGLQGPRVI 214 (477)
Q Consensus 141 ~g~v~~wG~~~~~~~~---~~~~~~~~~~~~i~~vs~G~~---~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~i 214 (477)
|+.|.+|-........ ............|..++.... ..+.-..||.|+.|-.... ..+
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---------------~~~ 167 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---------------AAV 167 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---------------EEE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---------------Ccc
Confidence 8899999876543211 111111122345777766543 3444567889999953221 111
Q ss_pred eccccccccCccCCceEEEecC--CceEEEEeeCCcEEEEeC
Q 011798 215 KGYAKFLDEAPELEKITQVSCG--EYHSAAVSENGEVYTWGL 254 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~i~~i~~G--~~~s~~lt~~g~v~~wG~ 254 (477)
..+. .......|..++.. ....+....+|.|+.|-.
T Consensus 168 ~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 168 LTLG----PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEEC----TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEEe----cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1110 00112346666553 333444557888999864
No 71
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.39 E-value=4.5e+02 Score=23.27 Aligned_cols=221 Identities=7% Similarity=-0.072 Sum_probs=0.0
Q ss_pred CCCcEEEEEcccce--eEEEecCCcEEEEeCCCCCcCCCCCCcCcccccccccccccceEEEeeCC----ceeEEEeccC
Q 011798 60 ANSRWLDIACGHEH--TAAVASDGTLFTWGANEFGQLGDGTEEGRKHPEKVKQLQSEFVKSISCGA----HCTAAIAEPR 133 (477)
Q Consensus 60 ~~~~i~~i~~G~~h--~~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~g~----~~s~~l~~~~ 133 (477)
....+..+.....| .+++|++|++|.---...-...... + .-.+++|..+.+ . ...+.++.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~---------l-l~~~e~i~~v~~-~~~~~~~~v~~T~-- 88 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS---------L-KSREEKIVGAFI-REKFGNRLLLATK-- 88 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC---------C-SSTTCCEEEEEE-GGGSCSEEEEEET--
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc---------c-CCCCCEEEEEEC-CcCCCCEEEEEeC--
Q ss_pred CCCCccccCcEEEecCCCC-CCCCceeecCCCCCCcEEEEecCCce--eEEEecCCcEEEeecCCCCCCcCCCCCCCCCC
Q 011798 134 ENDGTISTSRLWVWGQNQG-SNFPRLFWGAFTPNTIICQVSCGSVH--VVALSECGLLQAWGYNEYGQLGRGITCEGLQG 210 (477)
Q Consensus 134 ~~~~~~~~g~v~~wG~~~~-~~~~~~~~~~~~~~~~i~~vs~G~~~--~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~ 210 (477)
+|.+.-.-.... ....-.....+.....++.+.....| .+++|++|++|.+-....-.+|....-
T Consensus 89 -------~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G----- 156 (276)
T 3no0_A 89 -------KGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG----- 156 (276)
T ss_dssp -------TSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----
T ss_pred -------CCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----
Q ss_pred CeeeeccccccccCccCCceEEEecC--CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCCCccccceeeeecCCceEEEE
Q 011798 211 PRVIKGYAKFLDEAPELEKITQVSCG--EYHSAAVSENGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDV 288 (477)
Q Consensus 211 ~~~i~~~~~~~~~~~~~~~i~~i~~G--~~~s~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i 288 (477)
...-...+..+|+.+... ..+.+++|++|.+.-.-..++-..+.+....... .....+. -..+
T Consensus 157 --------v~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv------~~~~ 221 (276)
T 3no0_A 157 --------VQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLV------DLIP 221 (276)
T ss_dssp --------EECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEE------EEEE
T ss_pred --------EEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEE------EEEE
Q ss_pred EccCceEEEEecCCcEEE--EeCCCCCCCCCCCC
Q 011798 289 ACGGVHSCALTSKGALYA--WGGSQAGQLGLGPQ 320 (477)
Q Consensus 289 ~~G~~h~~~lt~~G~vy~--wG~n~~gqLG~~~~ 320 (477)
..+....+++|++|++.- +-.++.-.+|....
T Consensus 222 ~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R~~~ 255 (276)
T 3no0_A 222 IKEEVELLITTKNGKAFYDKINQKDIPLSTKKSI 255 (276)
T ss_dssp ESSEEEEEEEETTSCEEEEEEEGGGSCBCCTTSC
T ss_pred eCCCCEEEEEcCCCeEEEeeeCHHHCCCcCCCCC
Done!