Query 011800
Match_columns 477
No_of_seqs 170 out of 397
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 4.1E-14 1.4E-18 146.0 13.8 300 44-413 18-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 3.1E-10 1E-14 115.8 15.5 280 46-412 6-349 (362)
3 2hhc_A NODZ, nodulation fucosy 96.9 0.027 9.3E-07 55.8 16.1 52 47-101 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 96.4 0.15 5.2E-06 54.6 19.3 253 47-409 144-419 (526)
5 3l32_A Phosphoprotein; antipar 26.6 28 0.00097 25.4 1.6 21 193-213 2-22 (45)
6 1l2m_A REP protein; A+B fold, 25.6 68 0.0023 27.8 4.2 28 307-335 17-44 (118)
7 1h8b_A ACT-EF34, alpha-actinin 22.1 1E+02 0.0034 24.1 4.3 29 293-325 21-51 (75)
8 2eqr_A N-COR1, N-COR, nuclear 17.3 62 0.0021 24.3 2.0 18 305-322 10-27 (61)
9 2g7j_A Putative cytoplasmic pr 16.4 54 0.0018 28.4 1.5 20 309-328 2-21 (124)
10 1p3q_Q VPS9P, vacuolar protein 16.3 46 0.0016 25.2 1.0 13 343-355 15-27 (54)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.53 E-value=4.1e-14 Score=146.02 Aligned_cols=300 Identities=21% Similarity=0.206 Sum_probs=163.7
Q ss_pred CCCCCcEEEEEeC-C-chhHHHHHHHHHHHHHHHhcCe----EeecccccCCcccCC------CCCCcccchHHHHHhcc
Q 011800 44 SGGNNGYILVTAN-G-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 111 (477)
Q Consensus 44 ~~~snGyl~V~~n-G-GLnq~R~~IcdaVaVAriLNAT----LVlP~l~~~s~W~D~------S~F~dIfD~dhFI~~L~ 111 (477)
....++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 4567999998764 5 8999999999999999999999 999976533335443 279999999875 3
Q ss_pred CCceecccCchhhhhhh-hhhh-------------ccc----------c------cccCCCCCCChhHHH----------
Q 011800 112 PDIRMVKELPNKLQSLD-LEAI-------------GSV----------V------TDVDIPKESKPSFYL---------- 151 (477)
Q Consensus 112 ~dV~IVk~LP~~~~~~~-~~~~-------------~~~----------~------~~~~~~~~s~~~~Y~---------- 151 (477)
..|+|+.. +++.... +..+ ... + .........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566532 2221100 0000 000 0 000000000111210
Q ss_pred -------hhhhHhHhhc---ceEEEecccCCCcCCCCChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCC
Q 011800 152 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 221 (477)
Q Consensus 152 -------~~vlP~l~k~---~Vi~l~~~~~rLa~~~lp~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~ 221 (477)
..+-|.+.+. .-+-+..+...|+.-.-..+...+| ..|+|.+.|.+.|++.++..-.......++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~ 246 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDDADRI 246 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTTTTTC
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccceeec
Confidence 1122333322 1122222333333111122222222 379999999999999888654321000000
Q ss_pred CcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHh
Q 011800 222 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 301 (477)
Q Consensus 222 ~~~~~g~f~~~~~~~~~~~~~~~~~yiAlHLR~E~DmlA~sgC~~gg~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~ 301 (477)
- .|. .-...........+++|+++|+|-+.=+.++..|.
T Consensus 247 r---~~~--dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~------------------------------------ 285 (408)
T 4ap5_A 247 P---FQE--DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDV------------------------------------ 285 (408)
T ss_dssp C---CCS--SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSS------------------------------------
T ss_pred c---cch--hHhhhhcccccccCCCccccccccccchhhhhccC------------------------------------
Confidence 0 000 00000001112235789999999863222222222
Q ss_pred hhcCCCCcCCH---HHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchh
Q 011800 302 IRSEGLCPLTP---EEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAA 378 (477)
Q Consensus 302 ~R~~G~CPLtP---eEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~lAA 378 (477)
|-.+ +.+.-+++..+ -+.||||+-+. +..+..|++.+|.++.-.. ..+++..+ ...++|.
T Consensus 286 -------ps~~~~~~~i~~~~~~~~---~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~ 348 (408)
T 4ap5_A 286 -------PSLEGAVRKIRSLMKTHR---LDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAI 348 (408)
T ss_dssp -------CCHHHHHHHHHHHHHHHT---CSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcC---CCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhH
Confidence 2111 22333334443 34599998643 3446789999998764322 22444444 3446799
Q ss_pred hheeeeccCceeeecCCCCchhhhhhhhhhhccCC
Q 011800 379 LDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 413 (477)
Q Consensus 379 LDyiV~l~SDvFv~t~~G~nfa~~V~GhR~y~g~g 413 (477)
||-+||.+||+||+|..+ +|+..|.-.|-+.|..
T Consensus 349 idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 349 IDQWICAHARFFIGTSVS-TFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBC
T ss_pred HHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCC
Confidence 999999999999999855 8999999999999843
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.17 E-value=3.1e-10 Score=115.81 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=160.7
Q ss_pred CCCcEEEE-EeCCchhHHHHHHHHHHHHHHHhcCeEeecccccCCcccCC--CCCCcccchHHHHHhccCCceecccCch
Q 011800 46 GNNGYILV-TANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV--SQFSDIYQEEHFINYLTPDIRMVKELPN 122 (477)
Q Consensus 46 ~snGyl~V-~~nGGLnq~R~~IcdaVaVAriLNATLVlP~l~~~s~W~D~--S~F~dIfD~dhFI~~L~~dV~IVk~LP~ 122 (477)
.+||||+- .|-|-+.+|-....-+.+.|+.||.|||||-+-.-.. ..+ -.|++.|+++. |+..-|||.- +
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~m--e 78 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTM--Q 78 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECH--H
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeH--H
Confidence 47999998 6999999999999999999999999999998642222 111 25888888765 3334444421 1
Q ss_pred hhhh-hh-----hhhhcccccc-----------cCCC-CCCCh---------------hHHH----------hhhhHhH-
Q 011800 123 KLQS-LD-----LEAIGSVVTD-----------VDIP-KESKP---------------SFYL----------KNIIPIL- 158 (477)
Q Consensus 123 ~~~~-~~-----~~~~~~~~~~-----------~~~~-~~s~~---------------~~Y~----------~~vlP~l- 158 (477)
+++. +- +..-.+.+.. ..++ +.-.| .+|- ......+
T Consensus 79 ~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 79 EFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp HHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH
T ss_pred HHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH
Confidence 1100 00 0000000000 0111 11111 1110 0011111
Q ss_pred -----hhcceEEEecccCCCcCCCCC--hhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccc
Q 011800 159 -----LRNGVVHLLGFGNRLAFDPIP--FQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYAD 231 (477)
Q Consensus 159 -----~k~~Vi~l~~~~~rLa~~~lp--~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~f~~ 231 (477)
.+|-|+.|++.-.. |...+ -.||| -|+++++|.+.|++.++.--.
T Consensus 159 ~~~p~~~~pVlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~------------------ 210 (362)
T 3zy2_A 159 EKFPSEEYPVLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA------------------ 210 (362)
T ss_dssp HHSCTTTCSEEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC------------------
T ss_pred HhCCcccCceEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC------------------
Confidence 24677777763221 22111 34454 589999999999998877333
Q ss_pred hhhhhhhcccccCCceEEEeeehhhhhhhhccccCC-CC--h---hHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcC
Q 011800 232 SIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFG-GG--E---EERQELEKYREIHFPALAHLKKTTKLPSPAEIRSE 305 (477)
Q Consensus 232 ~~~~~~~~~~~~~~~yiAlHLR~E~DmlA~sgC~~g-g~--~---~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~~R~~ 305 (477)
+||||+|||-=.|+.-. |.+- .+ . +.-.-+ .|. +....+. .
T Consensus 211 -------------rpyVgIHLR~G~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy~------~~~~~lt------~ 257 (362)
T 3zy2_A 211 -------------KPFVAVHLRNDADWVRV--CEHIDTTTNRPLFASEQCL------GEG------HHLGTLT------K 257 (362)
T ss_dssp -------------SSEEEEEECCCHHHHHH--HHTCCTTTCCCCTTTHHHH------CGG------GTTCCCC------H
T ss_pred -------------CCeEEEEEecCCcHHHH--HhhhccccCcccccCCccc------CCc------ccCcccc------h
Confidence 38999999999999876 8752 11 0 000000 010 0000000 0
Q ss_pred CCCcCCHHH----HHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchhhhe
Q 011800 306 GLCPLTPEE----AVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDF 381 (477)
Q Consensus 306 G~CPLtPeE----vgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~lAALDy 381 (477)
..|==+.++ +..+++.++- ..||||+-.. ..++-|+++|+....+ +.+ +.| ..|+||.
T Consensus 258 emClPSle~I~rqIk~~vk~~~l---ksVFIATDa~----~~~~ELk~~L~~~~v~--vv~---~~p------e~a~ID~ 319 (362)
T 3zy2_A 258 EICSPSKQQILEQIVEKVGSIGA---KSVFVASDKD----HMIDEINEALKPYEIE--AHR---QEP------DDMYTSL 319 (362)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHTC---SEEEEEESSC----CCHHHHHHHHGGGTCC--EEC---CSS------CCHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHhcCC---cEEEEecCCH----HHHHHHHHHhhccCce--EEE---eCC------chhHHHH
Confidence 124334434 4455666654 4599999643 3578888888752111 100 001 1799999
Q ss_pred eeeccCceeeecCCCCchhhhhhhhhhhccC
Q 011800 382 IGCTAANAFAMTDSGSQLSSLVSGYRIYYGG 412 (477)
Q Consensus 382 iV~l~SDvFv~t~~G~nfa~~V~GhR~y~g~ 412 (477)
+||.+||+||+|.-+ +|+..|.=.|--.|.
T Consensus 320 ~I~~~A~~FIGN~~S-SFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 320 AIMGRADLFVGNCVS-TFSHIVKRERDHAGQ 349 (362)
T ss_dssp HHHHHSSEEEECTTC-HHHHHHHHHHHHSSS
T ss_pred HHHHhCCEeecCccc-cccHHHHHHHHhcCC
Confidence 999999999999855 799999999988873
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=96.86 E-value=0.027 Score=55.75 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCchhHHHHHHHHHHHHHHHhcCeEeecccccCCcccCCCCCCccc
Q 011800 47 NNGYILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIY 101 (477)
Q Consensus 47 snGyl~V~~nGGLnq~R~~IcdaVaVAriLNATLVlP~l~~~s~W~D~S~F~dIf 101 (477)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4579999999999999999999999999999998886543 23322 3466666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.44 E-value=0.15 Score=54.63 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=135.4
Q ss_pred CCcEEEEEe--CCchhHHHHHHHHHHHHHHHhcCeEeecccccCCcccCC-CCCCcccchHHHHHhccCCceecccCchh
Q 011800 47 NNGYILVTA--NGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDV-SQFSDIYQEEHFINYLTPDIRMVKELPNK 123 (477)
Q Consensus 47 snGyl~V~~--nGGLnq~R~~IcdaVaVAriLNATLVlP~l~~~s~W~D~-S~F~dIfD~dhFI~~L~~dV~IVk~LP~~ 123 (477)
+..||+... ..|+.-+-..++=|..+|-.+|-||||-.-. |.-. ..|+++|+. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc-
Confidence 457888876 5799999999999999999999999994422 4332 467777764 11111110 00
Q ss_pred hhhhhhhhhcccccccCCCCCCChhHHHhhhhHhHhhcceEEEecccC--C---CcCCCCChh----hhhhccc------
Q 011800 124 LQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGN--R---LAFDPIPFQ----LQRLRCR------ 188 (477)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s~~~~Y~~~vlP~l~k~~Vi~l~~~~~--r---La~~~lp~~----iQrLRCr------ 188 (477)
+ ....|..... -..+.||.+...++ + ...-.+|.+ ++++.-.
T Consensus 210 ----------~-----~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~ 266 (526)
T 2de0_X 210 ----------I-----STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWV 266 (526)
T ss_dssp ----------S-----CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHH
T ss_pred ----------c-----ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHH
Confidence 0 0011221100 12455554433221 1 111134544 2333210
Q ss_pred -ccc-cccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhccccC
Q 011800 189 -CNF-HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEF 266 (477)
Q Consensus 189 -vnf-~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~f~~~~~~~~~~~~~~~~~yiAlHLR~E~DmlA~sgC~~ 266 (477)
..+ .-+|+.++|++.-+.+.+.+.- +++.|+||.|-= |-++. ..
T Consensus 267 ~q~~~yl~rP~~~i~~~I~~~~~~l~~------------------------------~~piVGVHIRrG-Dk~~~---E~ 312 (526)
T 2de0_X 267 SQFVKYLIRPQPWLEKEIEEATKKLGF------------------------------KHPVIGVHVRRT-DKVGT---EA 312 (526)
T ss_dssp HHHHHHHTCBCHHHHHHHHHHHHHHTC------------------------------CSSEEEEEECCC---------CC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC------------------------------CCCEEEEEEeCC-CCCcc---cc
Confidence 011 1378899998887777766532 258999999963 43321 11
Q ss_pred CCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEeccccCccccchH
Q 011800 267 GGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGA 346 (477)
Q Consensus 267 gg~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~ 346 (477)
...+- .+-+.... .| + -.|+....+..+.||||+-+. ..++-
T Consensus 313 ~~~~~-~~Y~~~v~--~~--~-----------------------------~~l~~~~~~~~~~ifLATDDp----~v~~e 354 (526)
T 2de0_X 313 AFHPI-EEYMVHVE--EH--F-----------------------------QLLARRMQVDKKRVYLATDDP----SLLKE 354 (526)
T ss_dssp CSCSH-HHHHHHHH--HH--H-----------------------------HHHHTTSCCSSCEEEEEESCH----HHHHH
T ss_pred ccCCH-HHHHHHHH--HH--H-----------------------------HHHHhhcCCCCCeEEEEcCCH----HHHHH
Confidence 11110 01111111 01 0 012222467789999999865 44677
Q ss_pred HHhhCCCc--cccccCCCcccc-cccccccccchhhheeeeccCceeeecCCCCchhhhhhhhhhh
Q 011800 347 LNSLYPYL--VTKENLLSATEL-EPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIY 409 (477)
Q Consensus 347 L~~~FPnl--~tKetL~s~eEL-~pf~~~ss~lAALDyiV~l~SDvFv~t~~G~nfa~~V~GhR~y 409 (477)
+++.||+. ++.........+ ..+...+..-+.+|.++.++||+||.|.++ |++.++...|.-
T Consensus 355 ~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~srla~~l~~~ 419 (526)
T 2de0_X 355 AKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QVCRVAYEIMQT 419 (526)
T ss_dssp HHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HHHHHHHHHHTT
T ss_pred HHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HHHHHHHHHhcC
Confidence 78889985 332222111111 111111123578999999999999998755 798888766543
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=26.63 E-value=28 Score=25.43 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.5
Q ss_pred ccccchhHHHHHHHHHHHHhc
Q 011800 193 ALQFAPKIQETGALLLRRLRK 213 (477)
Q Consensus 193 ALrF~~~I~~lg~~lV~Rlr~ 213 (477)
|+-|+.-+.++|.++|+||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999998
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=25.60 E-value=68 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 011800 307 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 335 (477)
Q Consensus 307 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 335 (477)
.||||+||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 699999999999999885553 5565544
No 7
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=22.11 E-value=1e+02 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCC-CCChHhhhcCCCCcCCHHHHHHHHHHcC-CC
Q 011800 293 TTK-LPSPAEIRSEGLCPLTPEEAVLMLAALG-FN 325 (477)
Q Consensus 293 ~~k-~i~~~~~R~~G~CPLtPeEvgl~L~alG-f~ 325 (477)
.++ .|+.++.|. .||++|+--|++.+. ++
T Consensus 21 dg~G~It~~eLr~----~lt~eevd~~i~~~d~~d 51 (75)
T 1h8b_A 21 SDKPYILAEELRR----ELPPDQAQYCIKRMPAYS 51 (75)
T ss_dssp TSCSSBCHHHHHH----HSCHHHHHHHHHHSCSCC
T ss_pred cCCCCcCHHHHHh----cCCHHHHHHHHHhcCccc
Confidence 344 689998887 699999999999987 65
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.33 E-value=62 Score=24.27 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=16.3
Q ss_pred CCCCcCCHHHHHHHHHHc
Q 011800 305 EGLCPLTPEEAVLMLAAL 322 (477)
Q Consensus 305 ~G~CPLtPeEvgl~L~al 322 (477)
+...|.||+|..+|++++
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 567899999999999997
No 9
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=16.37 E-value=54 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHcCCCCCc
Q 011800 309 PLTPEEAVLMLAALGFNRKT 328 (477)
Q Consensus 309 PLtPeEvgl~L~alGf~~~T 328 (477)
.|-|.||+.+|...||..+.
T Consensus 2 YLRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 2 YLRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCCHHHHHHHHHHTTCEEEE
T ss_pred CcChHHHHHHHHHcCceEEE
Confidence 37899999999999997753
No 10
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=16.30 E-value=46 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=10.8
Q ss_pred cchHHHhhCCCcc
Q 011800 343 RLGALNSLYPYLV 355 (477)
Q Consensus 343 ~m~~L~~~FPnl~ 355 (477)
.+..|++|||++-
T Consensus 15 ~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 15 TLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHSTTSC
T ss_pred HHHHHHHHcccCC
Confidence 4788999999883
Done!