Query 011800
Match_columns 477
No_of_seqs 170 out of 397
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 15:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 48.0 1.1 8E-05 37.4 -1.3 35 80-114 32-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 35.0 17 0.0013 29.6 4.2 28 307-335 17-44 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 23.6 5.1 0.00037 27.6 -1.0 25 311-335 1-29 (44)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.1 29 0.0021 27.6 1.8 19 309-327 2-20 (112)
5 d1vjna_ d.157.1.4 (A:) Hypothe 15.6 78 0.0057 26.7 4.9 42 65-112 142-184 (209)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 15.6 39 0.0029 24.7 2.4 24 302-326 13-36 (75)
7 d1wgla_ a.5.2.4 (A:) Toll-inte 15.3 19 0.0014 25.9 0.5 47 341-392 10-56 (59)
8 d1okga1 c.46.1.2 (A:7-162) 3-m 14.3 71 0.0052 26.3 4.1 30 304-333 65-95 (156)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 13.9 22 0.0016 25.2 0.5 14 342-355 14-27 (54)
10 d1sfsa_ c.1.8.8 (A:) Unnamed h 13.8 38 0.0028 30.0 2.3 22 315-336 81-102 (213)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=48.02 E-value=1.1 Score=37.38 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=29.8
Q ss_pred EeecccccCCcccCC-----CCCCcccchHHHHHhccCCc
Q 011800 80 LVVPKFMYSSVWRDV-----SQFSDIYQEEHFINYLTPDI 114 (477)
Q Consensus 80 LVlP~l~~~s~W~D~-----S~F~dIfD~dhFI~~L~~dV 114 (477)
||||...-++.|+++ -.=+.|||-|.|--..|..|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 999999999999997 25578999999988776653
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=34.97 E-value=17 Score=29.58 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCCcEEEEEec
Q 011800 307 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 335 (477)
Q Consensus 307 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 335 (477)
+|||||||+...|+.|==+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999999765554 465543
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.64 E-value=5.1 Score=27.61 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=17.5
Q ss_pred CHHHHH--HHHHHcCCCCCcE--EEEEec
Q 011800 311 TPEEAV--LMLAALGFNRKTH--VFVAGA 335 (477)
Q Consensus 311 tPeEvg--l~L~alGf~~~T~--IYlA~g 335 (477)
||+|.. -=|.+|||+++.. +|+|-.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACd 29 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACE 29 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 566644 4488999999864 576654
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.09 E-value=29 Score=27.57 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHcCCCCC
Q 011800 309 PLTPEEAVLMLAALGFNRK 327 (477)
Q Consensus 309 PLtPeEvgl~L~alGf~~~ 327 (477)
.|-|.||+.+|...||..+
T Consensus 2 YLRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 2 YLRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCCHHHHHHHHHHTTCEEE
T ss_pred CcChHHHHHHHHHcCceEE
Confidence 3789999999999999764
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=15.58 E-value=78 Score=26.74 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCeEeecccccCCcccC-CCCCCcccchHHHHHhccC
Q 011800 65 AICNAVVLARLLNATLVVPKFMYSSVWRD-VSQFSDIYQEEHFINYLTP 112 (477)
Q Consensus 65 ~IcdaVaVAriLNATLVlP~l~~~s~W~D-~S~F~dIfD~dhFI~~L~~ 112 (477)
.--+|+.+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 456889999999999999962 322 2233 34557888887664
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.56 E-value=39 Score=24.66 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.7
Q ss_pred hhcCCCCcCCHHHHHHHHHHcCCCC
Q 011800 302 IRSEGLCPLTPEEAVLMLAALGFNR 326 (477)
Q Consensus 302 ~R~~G~CPLtPeEvgl~L~alGf~~ 326 (477)
.+..|.. ++++|+..+|+.|||.-
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCce
Confidence 3555666 99999999999999963
No 7
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.26 E-value=19 Score=25.94 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=27.4
Q ss_pred cccchHHHhhCCCccccccCCCcccccccccccccchhhheeeeccCceeee
Q 011800 341 TRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAM 392 (477)
Q Consensus 341 ~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~lAALDyiV~l~SDvFv~ 392 (477)
+..+..|++|||++... .+- .=|. .+..+.-+|+|=..-+.-+.|-|
T Consensus 10 Ee~i~~LkeMFP~~D~~-vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp 56 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQE-VIR--SVLE--AQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp HHHHHHHHHHCSSSCHH-HHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSC
T ss_pred HHHHHHHHHHCCCCCHH-HHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCC
Confidence 45689999999998532 221 1111 22445567777666665555543
No 8
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=14.32 E-value=71 Score=26.34 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.5
Q ss_pred cCCCCcC-CHHHHHHHHHHcCCCCCcEEEEE
Q 011800 304 SEGLCPL-TPEEAVLMLAALGFNRKTHVFVA 333 (477)
Q Consensus 304 ~~G~CPL-tPeEvgl~L~alGf~~~T~IYlA 333 (477)
..|.=|| +|++....|+++|..++|.|-|=
T Consensus 65 ~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 65 STARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 3344344 79999999999999999987763
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.88 E-value=22 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.3
Q ss_pred ccchHHHhhCCCcc
Q 011800 342 RRLGALNSLYPYLV 355 (477)
Q Consensus 342 ~~m~~L~~~FPnl~ 355 (477)
..++.|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 34788999999874
No 10
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.83 E-value=38 Score=29.96 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCcEEEEEecc
Q 011800 315 AVLMLAALGFNRKTHVFVAGAQ 336 (477)
Q Consensus 315 vgl~L~alGf~~~T~IYlA~ge 336 (477)
..-.-++|||+..|.||++-=.
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEEecc
Confidence 3346688999999999998753
Done!