Query 011801
Match_columns 477
No_of_seqs 323 out of 2787
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3piu_A 1-aminocyclopropane-1-c 100.0 1E-63 3.5E-68 516.0 41.7 427 1-427 1-432 (435)
2 1iay_A ACC synthase 2, 1-amino 100.0 2.5E-58 8.4E-63 474.6 44.8 424 3-427 1-427 (428)
3 1b5p_A Protein (aspartate amin 100.0 5.5E-48 1.9E-52 392.0 30.0 351 37-425 30-383 (385)
4 3tcm_A Alanine aminotransferas 100.0 1.3E-46 4.4E-51 395.0 38.8 374 39-427 96-494 (500)
5 3jtx_A Aminotransferase; NP_28 100.0 7.3E-46 2.5E-50 377.1 36.7 352 36-424 28-395 (396)
6 3b46_A Aminotransferase BNA3; 100.0 1.3E-46 4.6E-51 389.6 29.8 360 37-423 56-443 (447)
7 3k7y_A Aspartate aminotransfer 100.0 5.5E-46 1.9E-50 379.4 32.9 344 38-426 29-404 (405)
8 2hox_A ALLIIN lyase 1; cystein 100.0 2.1E-48 7.2E-53 400.7 14.7 357 9-426 19-424 (427)
9 3aow_A Putative uncharacterize 100.0 1.9E-45 6.5E-50 381.1 36.5 358 39-427 77-445 (448)
10 1gd9_A Aspartate aminotransfer 100.0 1E-45 3.5E-50 375.3 32.2 357 38-427 26-386 (389)
11 2x5d_A Probable aminotransfera 100.0 8.2E-46 2.8E-50 379.3 31.4 360 37-428 36-399 (412)
12 3ihj_A Alanine aminotransferas 100.0 2.9E-45 9.9E-50 384.4 35.2 346 79-428 122-494 (498)
13 3fvs_A Kynurenine--oxoglutarat 100.0 4.9E-46 1.7E-50 381.7 28.6 363 38-426 28-421 (422)
14 2o1b_A Aminotransferase, class 100.0 8.7E-46 3E-50 378.4 30.0 353 38-427 47-403 (404)
15 3e2y_A Kynurenine-oxoglutarate 100.0 4.9E-46 1.7E-50 380.1 28.2 359 38-423 23-409 (410)
16 3dyd_A Tyrosine aminotransfera 100.0 4.8E-45 1.6E-49 375.7 32.5 359 38-428 54-425 (427)
17 3h14_A Aminotransferase, class 100.0 6.6E-45 2.3E-49 369.7 31.8 349 37-428 30-383 (391)
18 3ezs_A Aminotransferase ASPB; 100.0 1.1E-44 3.7E-49 365.9 32.9 345 36-426 22-374 (376)
19 1yiz_A Kynurenine aminotransfe 100.0 5E-45 1.7E-49 375.3 30.3 365 37-426 36-428 (429)
20 3fdb_A Beta C-S lyase, putativ 100.0 5.8E-45 2E-49 367.8 29.7 348 37-426 22-375 (377)
21 3ele_A Amino transferase; RER0 100.0 1.8E-44 6.1E-49 367.2 33.0 347 37-427 34-396 (398)
22 1u08_A Hypothetical aminotrans 100.0 8.4E-45 2.9E-49 368.3 29.7 349 39-422 31-385 (386)
23 2dou_A Probable N-succinyldiam 100.0 7E-45 2.4E-49 367.6 28.8 347 38-424 25-375 (376)
24 1bw0_A TAT, protein (tyrosine 100.0 1.8E-44 6.2E-49 369.5 31.9 363 35-428 30-414 (416)
25 3dzz_A Putative pyridoxal 5'-p 100.0 2E-44 6.9E-49 365.4 31.7 356 38-427 27-389 (391)
26 3kax_A Aminotransferase, class 100.0 2E-44 6.9E-49 364.4 31.5 352 38-424 24-382 (383)
27 1o4s_A Aspartate aminotransfer 100.0 2.9E-44 9.8E-49 365.2 32.3 346 37-426 40-388 (389)
28 2r2n_A Kynurenine/alpha-aminoa 100.0 3.4E-44 1.1E-48 369.1 33.1 328 79-426 71-423 (425)
29 3qgu_A LL-diaminopimelate amin 100.0 1.2E-44 4.3E-49 374.7 30.0 354 37-428 68-441 (449)
30 1c7n_A Cystalysin; transferase 100.0 1.5E-44 5.3E-49 367.9 29.8 358 37-428 30-394 (399)
31 1j32_A Aspartate aminotransfer 100.0 2.1E-44 7.2E-49 365.5 30.6 354 37-426 29-386 (388)
32 3get_A Histidinol-phosphate am 100.0 6.9E-44 2.4E-48 358.7 33.1 332 38-424 30-364 (365)
33 1vp4_A Aminotransferase, putat 100.0 9.3E-44 3.2E-48 365.7 34.5 360 38-427 43-418 (425)
34 1d2f_A MALY protein; aminotran 100.0 4E-44 1.4E-48 363.9 31.1 352 37-426 27-388 (390)
35 2o0r_A RV0858C (N-succinyldiam 100.0 1.5E-44 5.1E-49 369.8 28.1 356 39-428 26-397 (411)
36 2x5f_A Aspartate_tyrosine_phen 100.0 6E-44 2.1E-48 367.5 31.9 353 38-426 47-428 (430)
37 3rq1_A Aminotransferase class 100.0 2.9E-43 1E-47 360.9 36.3 351 38-427 38-415 (418)
38 3nra_A Aspartate aminotransfer 100.0 5.1E-44 1.7E-48 364.6 29.9 357 37-427 38-405 (407)
39 2zy4_A L-aspartate beta-decarb 100.0 2.8E-44 9.4E-49 380.3 27.8 355 39-428 105-523 (546)
40 3g0t_A Putative aminotransfera 100.0 3.2E-44 1.1E-48 369.9 26.7 355 38-426 44-436 (437)
41 1xi9_A Putative transaminase; 100.0 2E-43 6.8E-48 360.9 32.1 355 37-427 37-403 (406)
42 4dq6_A Putative pyridoxal phos 100.0 1.9E-43 6.6E-48 358.2 30.9 352 37-424 31-390 (391)
43 3ly1_A Putative histidinol-pho 100.0 1.2E-42 4.2E-47 347.9 36.2 337 35-426 13-351 (354)
44 1fg7_A Histidinol phosphate am 100.0 5.8E-43 2E-47 351.5 33.2 323 37-423 28-354 (356)
45 2z61_A Probable aspartate amin 100.0 2.5E-43 8.5E-48 355.5 30.6 338 37-425 28-369 (370)
46 3l8a_A METC, putative aminotra 100.0 3.4E-43 1.2E-47 361.1 31.5 354 37-425 60-420 (421)
47 7aat_A Aspartate aminotransfer 100.0 7.1E-44 2.4E-48 363.3 25.9 344 39-424 29-400 (401)
48 2gb3_A Aspartate aminotransfer 100.0 5.6E-43 1.9E-47 358.0 32.5 351 37-428 42-403 (409)
49 3ffh_A Histidinol-phosphate am 100.0 2.7E-42 9.2E-47 346.8 35.8 330 38-424 32-363 (363)
50 3euc_A Histidinol-phosphate am 100.0 4.1E-42 1.4E-46 346.1 36.5 341 29-425 22-366 (367)
51 1v2d_A Glutamine aminotransfer 100.0 4.5E-43 1.5E-47 355.0 29.6 342 38-429 25-373 (381)
52 3t18_A Aminotransferase class 100.0 2.2E-42 7.4E-47 353.9 34.9 348 38-427 37-410 (413)
53 3ei9_A LL-diaminopimelate amin 100.0 3.6E-43 1.2E-47 361.9 28.7 352 37-427 55-428 (432)
54 2zc0_A Alanine glyoxylate tran 100.0 2.3E-42 7.7E-47 352.8 34.3 358 39-426 35-403 (407)
55 2zyj_A Alpha-aminodipate amino 100.0 1.7E-42 5.8E-47 352.8 32.4 350 39-427 33-393 (397)
56 4f4e_A Aromatic-amino-acid ami 100.0 4.9E-43 1.7E-47 359.8 28.3 345 38-424 49-419 (420)
57 3d6k_A Putative aminotransfera 100.0 8.3E-43 2.8E-47 358.4 30.0 320 79-427 69-418 (422)
58 3asa_A LL-diaminopimelate amin 100.0 4.8E-43 1.6E-47 357.5 25.6 350 37-427 32-393 (400)
59 3fsl_A Aromatic-amino-acid ami 100.0 2E-42 6.7E-47 351.9 29.5 344 38-423 26-396 (397)
60 3ppl_A Aspartate aminotransfer 100.0 5.4E-42 1.8E-46 352.7 32.6 322 78-427 70-420 (427)
61 1lc5_A COBD, L-threonine-O-3-p 100.0 1E-41 3.5E-46 343.1 33.3 335 37-427 23-360 (364)
62 3f6t_A Aspartate aminotransfer 100.0 1.1E-42 3.9E-47 367.5 25.5 356 39-428 104-526 (533)
63 3ftb_A Histidinol-phosphate am 100.0 3E-41 1E-45 338.6 34.1 333 36-425 24-359 (361)
64 4eu1_A Mitochondrial aspartate 100.0 5.7E-42 1.9E-46 350.5 27.1 344 38-424 41-408 (409)
65 1ajs_A Aspartate aminotransfer 100.0 1.1E-41 3.6E-46 348.5 28.6 348 38-426 30-410 (412)
66 3op7_A Aminotransferase class 100.0 2.8E-41 9.5E-46 341.0 29.7 313 79-427 56-371 (375)
67 3p1t_A Putative histidinol-pho 100.0 1.2E-40 4.1E-45 331.0 32.7 322 35-425 13-335 (337)
68 2q7w_A Aspartate aminotransfer 100.0 1.3E-41 4.3E-46 345.8 25.5 344 38-424 26-396 (396)
69 3ez1_A Aminotransferase MOCR f 100.0 4.9E-41 1.7E-45 344.9 29.6 321 79-427 62-415 (423)
70 3fkd_A L-threonine-O-3-phospha 100.0 8.3E-41 2.9E-45 334.4 30.4 326 38-429 15-344 (350)
71 3g7q_A Valine-pyruvate aminotr 100.0 1.3E-41 4.3E-46 348.2 24.7 354 38-427 31-413 (417)
72 3b1d_A Betac-S lyase; HET: PLP 100.0 6.2E-45 2.1E-49 370.4 0.0 353 38-425 31-391 (392)
73 1yaa_A Aspartate aminotransfer 100.0 4.7E-41 1.6E-45 343.9 28.1 348 38-426 29-410 (412)
74 3meb_A Aspartate aminotransfer 100.0 1.5E-40 5.2E-45 344.3 30.9 318 79-426 87-443 (448)
75 3bwn_A AT1G70560, L-tryptophan 100.0 1.7E-41 5.8E-46 345.3 21.6 347 23-426 7-386 (391)
76 3cq5_A Histidinol-phosphate am 100.0 1.7E-39 5.9E-44 327.5 35.9 334 40-426 32-367 (369)
77 3if2_A Aminotransferase; YP_26 100.0 1E-40 3.6E-45 344.6 26.1 364 38-428 31-441 (444)
78 2ay1_A Aroat, aromatic amino a 100.0 1.3E-40 4.6E-45 338.2 25.3 341 38-423 26-392 (394)
79 3hdo_A Histidinol-phosphate am 100.0 2.3E-39 8E-44 325.3 33.1 329 37-426 25-354 (360)
80 4h51_A Aspartate aminotransfer 100.0 3.7E-40 1.3E-44 336.7 27.1 344 40-427 46-417 (420)
81 1uu1_A Histidinol-phosphate am 100.0 6.1E-39 2.1E-43 319.2 29.6 322 31-423 12-334 (335)
82 3a2b_A Serine palmitoyltransfe 100.0 1.4E-35 4.7E-40 301.8 31.7 343 36-427 41-392 (398)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 1.3E-33 4.6E-38 286.5 29.3 345 37-427 42-396 (399)
84 1fc4_A 2-amino-3-ketobutyrate 100.0 1.6E-33 5.6E-38 286.6 26.9 341 36-427 43-397 (401)
85 1vjo_A Alanine--glyoxylate ami 100.0 3.5E-33 1.2E-37 283.2 27.5 299 88-425 65-393 (393)
86 2dr1_A PH1308 protein, 386AA l 100.0 2.1E-32 7.2E-37 276.3 30.4 301 89-427 52-379 (386)
87 1eg5_A Aminotransferase; PLP-d 100.0 5.9E-33 2E-37 280.0 25.1 301 84-429 42-378 (384)
88 1t3i_A Probable cysteine desul 100.0 1.4E-32 4.7E-37 280.9 26.7 342 38-428 27-414 (420)
89 1bs0_A Protein (8-amino-7-oxon 100.0 1.7E-32 5.9E-37 277.4 26.6 336 37-423 38-383 (384)
90 1elu_A L-cysteine/L-cystine C- 100.0 3.7E-33 1.3E-37 282.3 18.0 297 81-423 53-388 (390)
91 2ch1_A 3-hydroxykynurenine tra 100.0 8.7E-32 3E-36 273.1 27.5 298 88-428 53-384 (396)
92 1svv_A Threonine aldolase; str 100.0 1.3E-31 4.6E-36 267.5 28.1 336 39-426 14-357 (359)
93 1kmj_A Selenocysteine lyase; p 100.0 5.6E-32 1.9E-36 274.9 25.5 341 38-426 22-404 (406)
94 3f9t_A TDC, L-tyrosine decarbo 100.0 1.4E-31 4.8E-36 270.7 27.6 302 87-425 66-396 (397)
95 2bwn_A 5-aminolevulinate synth 100.0 9.8E-32 3.3E-36 273.6 26.0 344 38-426 46-399 (401)
96 2z9v_A Aspartate aminotransfer 100.0 2.8E-31 9.6E-36 269.0 28.4 298 87-428 43-372 (392)
97 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.8E-32 9.7E-37 274.1 20.5 298 82-426 49-369 (371)
98 2huf_A Alanine glyoxylate amin 100.0 2.5E-31 8.7E-36 269.4 27.6 299 86-428 52-384 (393)
99 1m32_A 2-aminoethylphosphonate 100.0 1.8E-31 6.1E-36 267.2 25.5 298 86-426 37-364 (366)
100 1e5e_A MGL, methionine gamma-l 100.0 3.4E-31 1.2E-35 270.4 27.8 285 80-426 54-394 (404)
101 1jg8_A L-ALLO-threonine aldola 100.0 6.9E-32 2.3E-36 269.1 21.9 331 37-426 2-345 (347)
102 3zrp_A Serine-pyruvate aminotr 100.0 8.3E-31 2.8E-35 264.2 28.7 297 87-429 36-365 (384)
103 4eb5_A Probable cysteine desul 100.0 2.6E-31 8.8E-36 268.0 24.8 298 87-429 44-375 (382)
104 3kki_A CAI-1 autoinducer synth 100.0 8.2E-31 2.8E-35 267.7 28.7 295 86-426 104-403 (409)
105 2w8t_A SPT, serine palmitoyltr 100.0 3.5E-31 1.2E-35 272.3 25.7 342 36-428 62-416 (427)
106 4hvk_A Probable cysteine desul 100.0 6.2E-31 2.1E-35 264.6 26.9 292 89-428 46-374 (382)
107 1iug_A Putative aspartate amin 100.0 2.4E-31 8.1E-36 265.2 23.2 293 87-427 35-348 (352)
108 2dkj_A Serine hydroxymethyltra 100.0 3.3E-31 1.1E-35 269.8 24.3 336 38-426 23-387 (407)
109 3nnk_A Ureidoglycine-glyoxylat 100.0 2.2E-30 7.7E-35 263.8 29.4 297 88-428 48-391 (411)
110 1sff_A 4-aminobutyrate aminotr 100.0 3.1E-31 1.1E-35 271.9 23.1 350 36-427 39-424 (426)
111 2ez2_A Beta-tyrosinase, tyrosi 100.0 6.1E-30 2.1E-34 264.9 32.6 318 81-427 70-431 (456)
112 3kgw_A Alanine-glyoxylate amin 100.0 2.8E-30 9.6E-35 261.2 28.3 299 88-428 58-389 (393)
113 3lvm_A Cysteine desulfurase; s 100.0 1.5E-30 5E-35 266.5 25.4 342 37-429 20-401 (423)
114 3isl_A Purine catabolism prote 100.0 7.5E-30 2.6E-34 260.3 30.4 297 88-428 46-391 (416)
115 2yrr_A Aminotransferase, class 100.0 2.7E-30 9.3E-35 257.2 26.0 296 86-426 33-352 (353)
116 1v72_A Aldolase; PLP-dependent 100.0 3.4E-30 1.2E-34 257.2 25.6 333 38-426 7-352 (356)
117 3cai_A Possible aminotransfera 100.0 2.4E-30 8.2E-35 263.5 24.6 332 39-422 26-404 (406)
118 2bkw_A Alanine-glyoxylate amin 100.0 2.7E-29 9.4E-34 253.4 27.9 298 87-426 39-383 (385)
119 2eh6_A Acoat, acetylornithine 100.0 3.5E-30 1.2E-34 259.5 21.0 322 37-424 27-375 (375)
120 3i4j_A Aminotransferase, class 100.0 1.8E-29 6.3E-34 259.4 25.0 356 36-426 27-427 (430)
121 2eo5_A 419AA long hypothetical 100.0 7.3E-29 2.5E-33 254.3 26.5 338 36-426 40-417 (419)
122 3vax_A Putative uncharacterize 100.0 3.5E-30 1.2E-34 261.6 16.0 338 35-426 16-399 (400)
123 2ord_A Acoat, acetylornithine 100.0 1.4E-29 4.9E-34 257.3 19.7 285 88-426 84-396 (397)
124 2oga_A Transaminase; PLP-depen 100.0 5.7E-29 2E-33 253.3 24.0 344 14-427 11-396 (399)
125 2aeu_A Hypothetical protein MJ 100.0 1.2E-28 4E-33 249.1 25.6 297 90-426 58-370 (374)
126 3ruy_A Ornithine aminotransfer 100.0 5.7E-29 2E-33 252.3 23.2 325 35-424 33-391 (392)
127 3f0h_A Aminotransferase; RER07 100.0 2.6E-28 8.9E-33 245.7 27.2 295 90-426 52-373 (376)
128 3a9z_A Selenocysteine lyase; P 100.0 5.4E-29 1.8E-33 255.8 21.9 333 38-428 17-429 (432)
129 4adb_A Succinylornithine trans 100.0 1.3E-28 4.3E-33 250.8 23.9 333 35-428 36-401 (406)
130 1vef_A Acetylornithine/acetyl- 100.0 4.2E-29 1.5E-33 253.6 19.7 327 36-424 43-394 (395)
131 3pj0_A LMO0305 protein; struct 100.0 3.3E-29 1.1E-33 250.8 18.1 328 39-423 14-358 (359)
132 3lws_A Aromatic amino acid bet 100.0 9E-29 3.1E-33 247.6 20.5 324 43-424 15-356 (357)
133 2rfv_A Methionine gamma-lyase; 100.0 5.7E-28 2E-32 245.9 26.0 281 86-422 64-395 (398)
134 3ffr_A Phosphoserine aminotran 100.0 3E-28 1E-32 243.5 22.7 287 90-424 43-361 (362)
135 1ax4_A Tryptophanase; tryptoph 100.0 8.7E-28 3E-32 249.4 26.7 321 81-428 71-442 (467)
136 3n5m_A Adenosylmethionine-8-am 100.0 9.5E-28 3.2E-32 248.4 26.8 356 35-426 46-451 (452)
137 2pb2_A Acetylornithine/succiny 100.0 3.6E-28 1.2E-32 249.3 23.1 331 35-426 54-417 (420)
138 3nx3_A Acoat, acetylornithine 100.0 7.9E-28 2.7E-32 244.3 24.7 334 35-426 33-394 (395)
139 3n0l_A Serine hydroxymethyltra 100.0 2.7E-27 9.3E-32 241.6 27.6 346 39-427 26-389 (417)
140 1mdo_A ARNB aminotransferase; 100.0 2.2E-27 7.4E-32 240.6 26.6 298 82-427 35-386 (393)
141 1b9h_A AHBA synthase, protein 100.0 6.4E-28 2.2E-32 244.3 22.4 298 81-426 33-387 (388)
142 3mad_A Sphingosine-1-phosphate 100.0 1E-27 3.4E-32 252.3 24.4 307 82-428 131-470 (514)
143 2po3_A 4-dehydrase; external a 100.0 1.2E-27 4.2E-32 245.4 24.4 326 42-428 20-387 (424)
144 1s0a_A Adenosylmethionine-8-am 100.0 3.4E-27 1.2E-31 242.4 27.4 339 37-427 42-424 (429)
145 1zod_A DGD, 2,2-dialkylglycine 100.0 2.5E-27 8.6E-32 243.6 26.0 307 89-426 88-431 (433)
146 3dxv_A Alpha-amino-epsilon-cap 100.0 1.1E-27 3.7E-32 246.8 23.1 349 35-427 40-425 (439)
147 3gju_A Putative aminotransfera 100.0 6.4E-27 2.2E-31 242.8 28.9 355 35-427 48-456 (460)
148 1ibj_A CBL, cystathionine beta 100.0 3.8E-27 1.3E-31 244.2 26.6 295 80-426 125-461 (464)
149 3ecd_A Serine hydroxymethyltra 100.0 1.1E-26 3.7E-31 237.6 29.5 281 115-427 98-397 (425)
150 4ffc_A 4-aminobutyrate aminotr 100.0 2.2E-27 7.5E-32 245.8 24.3 359 35-427 61-449 (453)
151 1wyu_B Glycine dehydrogenase s 100.0 2.5E-27 8.5E-32 246.8 23.6 301 85-426 102-440 (474)
152 4a6r_A Omega transaminase; tra 100.0 1.6E-26 5.4E-31 239.8 28.6 352 35-427 47-449 (459)
153 3gbx_A Serine hydroxymethyltra 100.0 5E-27 1.7E-31 239.7 24.3 300 89-427 75-396 (420)
154 1qz9_A Kynureninase; kynurenin 100.0 2.5E-27 8.4E-32 242.0 21.4 282 87-426 72-401 (416)
155 3mc6_A Sphingosine-1-phosphate 100.0 1.5E-27 5E-32 249.9 19.2 310 82-429 99-439 (497)
156 1w23_A Phosphoserine aminotran 100.0 5.2E-28 1.8E-32 242.0 15.0 284 88-426 50-359 (360)
157 2c0r_A PSAT, phosphoserine ami 100.0 2.1E-27 7.1E-32 238.2 19.3 288 88-427 47-361 (362)
158 1rv3_A Serine hydroxymethyltra 100.0 9.5E-27 3.3E-31 242.9 24.9 344 39-426 45-430 (483)
159 1cs1_A CGS, protein (cystathio 100.0 6.8E-26 2.3E-30 229.6 30.1 285 81-426 48-382 (386)
160 2vi8_A Serine hydroxymethyltra 99.9 2.2E-26 7.5E-31 234.0 25.1 293 93-427 76-387 (405)
161 1pff_A Methionine gamma-lyase; 99.9 4.8E-27 1.7E-31 232.6 19.6 278 90-423 2-330 (331)
162 3oks_A 4-aminobutyrate transam 99.9 6.1E-26 2.1E-30 234.8 28.5 357 35-426 58-450 (451)
163 3a8u_X Omega-amino acid--pyruv 99.9 4.1E-26 1.4E-30 235.9 26.7 345 36-426 48-446 (449)
164 3cog_A Cystathionine gamma-lya 99.9 2.8E-26 9.5E-31 233.9 24.8 193 81-315 63-263 (403)
165 3l44_A Glutamate-1-semialdehyd 99.9 1.3E-26 4.4E-31 238.4 22.4 345 35-428 52-431 (434)
166 3dod_A Adenosylmethionine-8-am 99.9 1.7E-26 5.9E-31 238.7 23.1 350 35-427 41-443 (448)
167 2oat_A Ornithine aminotransfer 99.9 3.9E-26 1.3E-30 235.5 25.0 330 36-426 74-438 (439)
168 3uwc_A Nucleotide-sugar aminot 99.9 2.1E-26 7.3E-31 231.6 22.3 321 39-426 7-370 (374)
169 3dr4_A Putative perosamine syn 99.9 1.4E-26 4.7E-31 234.8 20.8 323 37-424 21-390 (391)
170 3h7f_A Serine hydroxymethyltra 99.9 8.3E-26 2.8E-30 233.6 27.0 342 39-429 46-416 (447)
171 3qhx_A Cystathionine gamma-syn 99.9 2.2E-25 7.4E-30 226.5 28.8 282 87-424 67-391 (392)
172 3ndn_A O-succinylhomoserine su 99.9 9E-26 3.1E-30 230.8 26.1 285 88-424 83-413 (414)
173 3k28_A Glutamate-1-semialdehyd 99.9 3.5E-26 1.2E-30 235.0 22.5 342 34-427 49-427 (429)
174 2oqx_A Tryptophanase; lyase, p 99.9 4.3E-26 1.5E-30 236.7 23.0 320 81-428 69-443 (467)
175 1gc0_A Methionine gamma-lyase; 99.9 2.4E-25 8.1E-30 226.6 27.8 282 86-423 65-397 (398)
176 3fq8_A Glutamate-1-semialdehyd 99.9 6.2E-26 2.1E-30 232.9 22.9 337 35-426 49-426 (427)
177 3tfu_A Adenosylmethionine-8-am 99.9 7.8E-26 2.7E-30 234.3 23.1 341 36-427 71-453 (457)
178 1z7d_A Ornithine aminotransfer 99.9 1.7E-25 5.7E-30 230.4 25.2 331 36-427 63-429 (433)
179 2dgk_A GAD-beta, GADB, glutama 99.9 3.2E-25 1.1E-29 229.4 26.8 315 81-428 72-435 (452)
180 3acz_A Methionine gamma-lyase; 99.9 6.2E-25 2.1E-29 222.9 28.4 279 87-425 60-387 (389)
181 1qgn_A Protein (cystathionine 99.9 1.3E-24 4.5E-29 223.6 30.4 283 88-426 116-444 (445)
182 3e9k_A Kynureninase; kynurenin 99.9 2.2E-25 7.4E-30 231.5 24.5 293 89-426 114-460 (465)
183 3i5t_A Aminotransferase; pyrid 99.9 3.8E-25 1.3E-29 230.3 26.4 350 35-428 51-455 (476)
184 2c81_A Glutamine-2-deoxy-scyll 99.9 8.9E-25 3.1E-29 223.6 28.6 299 81-426 33-413 (418)
185 1n8p_A Cystathionine gamma-lya 99.9 3E-25 1E-29 225.6 24.4 282 87-423 56-391 (393)
186 2fyf_A PSAT, phosphoserine ami 99.9 1E-25 3.5E-30 229.1 20.9 284 88-426 80-397 (398)
187 2fnu_A Aminotransferase; prote 99.9 6E-25 2.1E-29 220.8 26.3 289 85-426 31-371 (375)
188 1o69_A Aminotransferase; struc 99.9 2.1E-24 7.3E-29 219.2 30.1 301 82-426 26-386 (394)
189 2cb1_A O-acetyl homoserine sul 99.9 2.2E-24 7.5E-29 220.5 29.6 283 81-421 49-410 (412)
190 2epj_A Glutamate-1-semialdehyd 99.9 5.1E-25 1.8E-29 226.6 24.1 335 35-427 53-431 (434)
191 3hmu_A Aminotransferase, class 99.9 1E-24 3.6E-29 226.8 25.8 350 34-427 51-452 (472)
192 2e7u_A Glutamate-1-semialdehyd 99.9 1.3E-24 4.5E-29 222.8 26.2 332 35-424 49-424 (424)
193 2cy8_A D-phgat, D-phenylglycin 99.9 1.2E-24 4E-29 225.2 26.0 332 36-428 55-436 (453)
194 2okj_A Glutamate decarboxylase 99.9 1.6E-24 5.5E-29 227.3 27.4 322 82-426 124-501 (504)
195 3frk_A QDTB; aminotransferase, 99.9 2.5E-25 8.4E-30 224.1 18.2 295 82-426 32-367 (373)
196 4e77_A Glutamate-1-semialdehyd 99.9 4.1E-24 1.4E-28 219.5 26.5 342 34-426 49-428 (429)
197 1js3_A DDC;, DOPA decarboxylas 99.9 2.4E-24 8.2E-29 224.9 24.6 320 82-428 105-475 (486)
198 3nyt_A Aminotransferase WBPE; 99.9 1.7E-24 5.7E-29 217.7 22.1 290 81-424 30-361 (367)
199 3hbx_A GAD 1, glutamate decarb 99.9 7.6E-24 2.6E-28 221.9 27.8 317 82-429 87-446 (502)
200 3vp6_A Glutamate decarboxylase 99.9 1.4E-23 4.9E-28 220.3 29.3 325 80-426 125-504 (511)
201 3ke3_A Putative serine-pyruvat 99.9 1.7E-23 5.7E-28 211.5 27.8 282 112-427 52-376 (379)
202 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.4E-23 4.7E-28 216.2 26.9 294 82-426 58-435 (437)
203 2cjg_A L-lysine-epsilon aminot 99.9 2.8E-24 9.5E-29 222.3 20.8 295 88-426 103-447 (449)
204 2z67_A O-phosphoseryl-tRNA(SEC 99.9 8.5E-24 2.9E-28 219.0 24.4 302 88-424 131-455 (456)
205 3ri6_A O-acetylhomoserine sulf 99.9 8.4E-24 2.9E-28 216.9 23.8 281 87-424 83-429 (430)
206 2x3l_A ORN/Lys/Arg decarboxyla 99.9 5.6E-25 1.9E-29 227.2 13.0 287 84-427 55-353 (446)
207 2jis_A Cysteine sulfinic acid 99.9 7.9E-23 2.7E-27 215.0 28.6 321 82-426 140-514 (515)
208 2qma_A Diaminobutyrate-pyruvat 99.9 2.3E-23 8E-28 218.1 24.0 316 82-426 132-495 (497)
209 3nmy_A Xometc, cystathionine g 99.9 1.5E-22 5.1E-27 206.0 25.7 281 88-425 69-397 (400)
210 2fq6_A Cystathionine beta-lyas 99.9 7.8E-23 2.7E-27 208.9 23.3 208 88-343 84-300 (415)
211 4e1o_A HDC, histidine decarbox 99.9 1.1E-22 3.9E-27 211.9 24.6 321 80-426 108-477 (481)
212 3k40_A Aromatic-L-amino-acid d 99.9 1.7E-22 5.7E-27 210.3 23.1 320 81-427 104-471 (475)
213 3ju7_A Putative PLP-dependent 99.9 8.8E-22 3E-26 198.8 25.8 292 87-426 37-374 (377)
214 2a7v_A Serine hydroxymethyltra 99.9 1.1E-21 3.7E-26 203.6 26.5 302 89-426 99-440 (490)
215 2ctz_A O-acetyl-L-homoserine s 99.9 1.6E-21 5.5E-26 199.8 26.2 157 88-283 60-221 (421)
216 3b8x_A WBDK, pyridoxamine 5-ph 99.9 7.4E-21 2.5E-25 192.6 28.6 291 82-420 30-389 (390)
217 3i16_A Aluminum resistance pro 99.9 9.2E-22 3.1E-26 201.0 19.6 240 81-361 69-340 (427)
218 1ohv_A 4-aminobutyrate aminotr 99.9 1.4E-21 4.6E-26 203.3 21.0 345 34-426 59-470 (472)
219 3jzl_A Putative cystathionine 99.9 1.1E-21 3.9E-26 199.6 19.3 238 81-361 55-323 (409)
220 3hvy_A Cystathionine beta-lyas 99.9 1E-21 3.5E-26 200.7 18.7 239 81-361 70-340 (427)
221 1wyu_A Glycine dehydrogenase ( 99.9 1.3E-21 4.6E-26 201.4 19.4 282 89-424 111-437 (438)
222 1c4k_A Protein (ornithine deca 99.9 6E-21 2E-25 206.6 20.5 311 87-428 174-567 (730)
223 2vyc_A Biodegradative arginine 99.8 2E-20 6.8E-25 204.1 20.8 179 88-285 207-402 (755)
224 3ht4_A Aluminum resistance pro 99.8 1.7E-20 5.9E-25 192.4 19.0 254 88-382 67-344 (431)
225 2yky_A Beta-transaminase; tran 99.8 5.5E-23 1.9E-27 212.2 0.0 337 34-428 96-461 (465)
226 3n75_A LDC, lysine decarboxyla 99.8 3.4E-18 1.2E-22 183.8 18.5 176 87-285 196-383 (715)
227 3e77_A Phosphoserine aminotran 99.8 1.2E-17 4.1E-22 167.6 16.5 289 88-427 60-375 (377)
228 3qm2_A Phosphoserine aminotran 99.7 2.9E-17 9.8E-22 165.7 18.1 287 86-426 72-384 (386)
229 3m5u_A Phosphoserine aminotran 99.7 2E-16 7E-21 158.0 23.4 331 36-427 2-360 (361)
230 4ao9_A Beta-phenylalanine amin 99.7 4.9E-15 1.7E-19 151.9 22.9 338 34-429 83-448 (454)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 2.6E-13 9E-18 136.4 27.5 316 90-429 116-463 (501)
232 3ou5_A Serine hydroxymethyltra 99.6 7.4E-13 2.5E-17 132.5 24.5 304 88-425 98-439 (490)
233 4atq_A 4-aminobutyrate transam 99.5 4.4E-13 1.5E-17 137.9 22.9 360 32-426 58-454 (456)
234 4e3q_A Pyruvate transaminase; 99.5 2.3E-12 7.8E-17 133.0 25.8 347 34-426 63-467 (473)
235 4a0g_A Adenosylmethionine-8-am 99.5 3.9E-13 1.3E-17 147.8 19.1 231 176-427 577-828 (831)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 3.2E-11 1.1E-15 122.5 29.5 318 88-427 96-443 (450)
237 4fgs_A Probable dehydrogenase 90.5 1.9 6.5E-05 40.4 11.0 101 112-219 30-133 (273)
238 3rwb_A TPLDH, pyridoxal 4-dehy 87.6 3.5 0.00012 37.6 10.5 103 111-219 6-110 (247)
239 4g81_D Putative hexonate dehyd 86.4 6.1 0.00021 36.5 11.4 104 109-219 7-116 (255)
240 4dqx_A Probable oxidoreductase 86.3 5.7 0.00019 36.9 11.4 103 111-219 27-131 (277)
241 4e6p_A Probable sorbitol dehyd 85.6 6.7 0.00023 35.8 11.4 102 111-218 8-111 (259)
242 3tpc_A Short chain alcohol deh 85.4 5.4 0.00018 36.4 10.6 101 111-218 7-114 (257)
243 4eso_A Putative oxidoreductase 84.9 7 0.00024 35.7 11.1 102 111-219 8-112 (255)
244 3gvc_A Oxidoreductase, probabl 84.7 5.1 0.00017 37.3 10.1 102 112-219 30-133 (277)
245 3l6e_A Oxidoreductase, short-c 84.3 6 0.0002 35.7 10.2 101 113-219 5-107 (235)
246 3grp_A 3-oxoacyl-(acyl carrier 83.8 6.3 0.00022 36.3 10.4 101 111-218 27-130 (266)
247 3ged_A Short-chain dehydrogena 83.8 6.2 0.00021 36.2 10.0 99 113-219 4-105 (247)
248 3pxx_A Carveol dehydrogenase; 83.7 5.1 0.00017 37.1 9.7 102 111-218 10-126 (287)
249 3n74_A 3-ketoacyl-(acyl-carrie 83.3 9.3 0.00032 34.8 11.2 104 110-219 8-114 (261)
250 3sc4_A Short chain dehydrogena 83.0 17 0.00057 33.7 13.0 104 110-219 8-123 (285)
251 2o23_A HADH2 protein; HSD17B10 82.6 14 0.00046 33.6 12.1 102 111-218 12-121 (265)
252 3op4_A 3-oxoacyl-[acyl-carrier 82.4 8.3 0.00029 35.0 10.5 101 111-218 9-112 (248)
253 4gkb_A 3-oxoacyl-[acyl-carrier 82.2 13 0.00046 34.1 11.8 104 109-219 5-112 (258)
254 2ew8_A (S)-1-phenylethanol deh 82.2 13 0.00045 33.5 11.8 102 112-219 8-112 (249)
255 3tzq_B Short-chain type dehydr 82.2 11 0.00037 34.7 11.3 102 111-219 11-117 (271)
256 3ksu_A 3-oxoacyl-acyl carrier 82.1 13 0.00046 33.9 11.8 103 109-218 9-120 (262)
257 3ppi_A 3-hydroxyacyl-COA dehyd 82.1 9.1 0.00031 35.3 10.8 102 111-219 30-139 (281)
258 3gem_A Short chain dehydrogena 81.8 8.7 0.0003 35.2 10.4 99 111-218 27-127 (260)
259 3h7a_A Short chain dehydrogena 81.5 23 0.00078 32.0 13.1 102 111-219 7-113 (252)
260 3rih_A Short chain dehydrogena 81.3 17 0.00057 34.0 12.4 103 111-219 41-149 (293)
261 3m1a_A Putative dehydrogenase; 81.3 9.4 0.00032 35.2 10.5 101 112-218 6-108 (281)
262 4fn4_A Short chain dehydrogena 80.7 15 0.0005 33.8 11.4 101 112-219 8-115 (254)
263 3e03_A Short chain dehydrogena 80.7 17 0.00057 33.5 12.0 102 110-218 5-119 (274)
264 3t7c_A Carveol dehydrogenase; 80.6 14 0.00049 34.5 11.6 102 111-219 28-148 (299)
265 4fc7_A Peroxisomal 2,4-dienoyl 80.4 15 0.0005 33.9 11.6 102 112-219 28-135 (277)
266 3kvo_A Hydroxysteroid dehydrog 80.2 23 0.00079 34.0 13.2 102 111-218 45-158 (346)
267 1hxh_A 3BETA/17BETA-hydroxyste 80.0 14 0.00049 33.4 11.2 101 112-218 7-109 (253)
268 3uve_A Carveol dehydrogenase ( 79.8 9.7 0.00033 35.3 10.1 103 110-219 10-135 (286)
269 3v2h_A D-beta-hydroxybutyrate 79.7 15 0.00051 34.0 11.3 103 112-219 26-134 (281)
270 4dmm_A 3-oxoacyl-[acyl-carrier 79.0 10 0.00035 34.9 9.9 104 110-219 27-136 (269)
271 3sx2_A Putative 3-ketoacyl-(ac 78.9 11 0.00037 34.8 10.1 100 111-218 13-127 (278)
272 3tsc_A Putative oxidoreductase 78.7 12 0.00039 34.6 10.2 102 111-219 11-131 (277)
273 3lf2_A Short chain oxidoreduct 78.5 21 0.00071 32.6 11.8 106 109-219 6-117 (265)
274 3is3_A 17BETA-hydroxysteroid d 77.9 9.9 0.00034 34.9 9.4 101 112-219 19-126 (270)
275 1hdc_A 3-alpha, 20 beta-hydrox 77.8 17 0.00058 33.0 10.9 101 112-218 6-108 (254)
276 4dyv_A Short-chain dehydrogena 77.4 13 0.00046 34.2 10.2 100 113-219 30-133 (272)
277 3v2g_A 3-oxoacyl-[acyl-carrier 77.4 13 0.00046 34.1 10.2 104 109-219 29-139 (271)
278 1uls_A Putative 3-oxoacyl-acyl 77.3 17 0.00058 32.7 10.7 99 112-219 6-107 (245)
279 4ibo_A Gluconate dehydrogenase 76.7 20 0.00069 32.9 11.2 103 111-219 26-133 (271)
280 3lyl_A 3-oxoacyl-(acyl-carrier 76.6 21 0.00072 31.9 11.2 102 111-218 5-111 (247)
281 3s55_A Putative short-chain de 76.5 23 0.00078 32.5 11.6 101 111-218 10-128 (281)
282 3qlj_A Short chain dehydrogena 76.4 14 0.00049 34.9 10.4 101 112-219 28-144 (322)
283 3r1i_A Short-chain type dehydr 76.3 24 0.00083 32.4 11.7 104 110-219 31-139 (276)
284 3pgx_A Carveol dehydrogenase; 76.1 15 0.00052 33.8 10.3 103 111-219 15-135 (280)
285 3ijr_A Oxidoreductase, short c 76.0 26 0.00087 32.5 11.9 102 111-219 47-156 (291)
286 3l77_A Short-chain alcohol deh 75.9 10 0.00035 33.8 8.7 101 113-219 4-110 (235)
287 3rkr_A Short chain oxidoreduct 75.6 28 0.00095 31.6 11.8 101 112-218 30-136 (262)
288 3dii_A Short-chain dehydrogena 75.5 16 0.00055 32.9 10.1 100 113-219 4-105 (247)
289 4iin_A 3-ketoacyl-acyl carrier 75.4 16 0.00055 33.5 10.1 104 109-218 27-136 (271)
290 4egf_A L-xylulose reductase; s 75.2 18 0.00062 33.0 10.4 104 111-219 20-128 (266)
291 3osu_A 3-oxoacyl-[acyl-carrier 75.2 16 0.00055 32.9 9.9 101 113-219 6-112 (246)
292 4fhz_A Phospholipase/carboxyle 75.1 33 0.0011 31.8 12.3 109 109-223 154-265 (285)
293 3gaf_A 7-alpha-hydroxysteroid 74.9 24 0.00081 32.0 11.1 102 110-218 11-117 (256)
294 3oec_A Carveol dehydrogenase ( 74.8 15 0.00052 34.7 10.0 101 112-219 47-165 (317)
295 3edm_A Short chain dehydrogena 74.7 20 0.00069 32.6 10.6 102 111-218 8-116 (259)
296 3tfo_A Putative 3-oxoacyl-(acy 74.7 30 0.001 31.6 11.8 101 113-219 6-111 (264)
297 3ezl_A Acetoacetyl-COA reducta 74.6 19 0.00065 32.5 10.3 100 113-218 15-120 (256)
298 2a4k_A 3-oxoacyl-[acyl carrier 74.3 18 0.00061 33.1 10.1 101 112-218 7-109 (263)
299 3tjr_A Short chain dehydrogena 74.0 23 0.00077 33.1 10.9 101 111-218 31-137 (301)
300 3imf_A Short chain dehydrogena 73.8 26 0.00091 31.7 11.1 101 112-219 7-113 (257)
301 1nff_A Putative oxidoreductase 73.6 26 0.0009 31.8 11.1 102 111-218 7-110 (260)
302 2gjx_A Beta-hexosaminidase alp 73.6 7.9 0.00027 39.6 8.0 27 203-229 207-233 (507)
303 1vl8_A Gluconate 5-dehydrogena 73.6 30 0.001 31.6 11.5 102 111-218 21-128 (267)
304 3ucx_A Short chain dehydrogena 73.2 28 0.00096 31.6 11.2 103 111-219 11-119 (264)
305 3sju_A Keto reductase; short-c 73.0 28 0.00096 32.0 11.2 102 112-219 25-131 (279)
306 2jah_A Clavulanic acid dehydro 72.9 28 0.00095 31.3 11.0 101 112-218 8-113 (247)
307 3zv4_A CIS-2,3-dihydrobiphenyl 72.8 18 0.0006 33.5 9.8 83 111-200 5-87 (281)
308 3ak4_A NADH-dependent quinucli 72.5 26 0.00089 31.7 10.8 102 111-218 12-115 (263)
309 3gh5_A HEX1, beta-hexosaminida 72.4 13 0.00045 38.1 9.2 111 107-228 126-273 (525)
310 3pk0_A Short-chain dehydrogena 72.0 25 0.00084 32.0 10.4 105 110-219 9-118 (262)
311 3gdg_A Probable NADP-dependent 71.8 21 0.00072 32.4 9.9 102 111-218 20-130 (267)
312 3fkr_A L-2-keto-3-deoxyarabona 71.7 27 0.00093 33.0 10.8 93 113-232 79-174 (309)
313 2q5c_A NTRC family transcripti 71.4 49 0.0017 28.8 11.8 74 115-203 33-106 (196)
314 2pnf_A 3-oxoacyl-[acyl-carrier 71.2 41 0.0014 29.8 11.7 102 111-218 7-114 (248)
315 3oid_A Enoyl-[acyl-carrier-pro 70.9 37 0.0013 30.7 11.4 101 113-219 6-112 (258)
316 3u5t_A 3-oxoacyl-[acyl-carrier 70.9 20 0.00069 32.8 9.6 101 112-219 28-135 (267)
317 2c07_A 3-oxoacyl-(acyl-carrier 70.5 52 0.0018 30.1 12.5 101 112-218 45-150 (285)
318 3og9_A Protein YAHD A copper i 70.4 50 0.0017 28.1 12.2 108 109-223 99-208 (209)
319 3ftp_A 3-oxoacyl-[acyl-carrier 70.3 30 0.001 31.7 10.7 102 111-219 28-135 (270)
320 3o38_A Short chain dehydrogena 70.0 30 0.001 31.3 10.6 104 111-219 22-131 (266)
321 2q2v_A Beta-D-hydroxybutyrate 69.9 42 0.0014 30.1 11.5 101 112-218 5-108 (255)
322 3v8b_A Putative dehydrogenase, 69.6 40 0.0014 31.1 11.4 102 111-219 28-136 (283)
323 3nyw_A Putative oxidoreductase 69.3 28 0.00094 31.4 10.1 103 111-218 7-115 (250)
324 3r3s_A Oxidoreductase; structu 69.2 31 0.0011 32.0 10.6 102 111-219 49-159 (294)
325 2wsb_A Galactitol dehydrogenas 69.2 38 0.0013 30.2 11.0 102 110-218 10-114 (254)
326 3u9l_A 3-oxoacyl-[acyl-carrier 69.2 32 0.0011 32.6 10.9 99 113-218 7-116 (324)
327 3ai3_A NADPH-sorbose reductase 69.2 38 0.0013 30.6 11.1 102 111-218 7-114 (263)
328 3a28_C L-2.3-butanediol dehydr 69.0 32 0.0011 31.0 10.5 99 113-218 4-110 (258)
329 2uvd_A 3-oxoacyl-(acyl-carrier 69.0 26 0.0009 31.4 9.9 100 113-218 6-111 (246)
330 1jak_A Beta-N-acetylhexosamini 68.9 8.6 0.00029 39.4 7.0 25 205-229 225-249 (512)
331 1geg_A Acetoin reductase; SDR 68.8 36 0.0012 30.6 10.8 101 113-219 4-109 (256)
332 1iy8_A Levodione reductase; ox 68.4 37 0.0013 30.8 10.9 101 112-218 14-122 (267)
333 1x1t_A D(-)-3-hydroxybutyrate 68.3 37 0.0013 30.7 10.8 100 113-218 6-112 (260)
334 3i1j_A Oxidoreductase, short c 68.2 41 0.0014 29.9 11.0 103 112-219 15-125 (247)
335 2rhc_B Actinorhodin polyketide 68.0 43 0.0015 30.6 11.3 100 112-218 23-128 (277)
336 3ek2_A Enoyl-(acyl-carrier-pro 67.9 29 0.001 31.4 10.0 104 109-218 12-126 (271)
337 3zu3_A Putative reductase YPO4 67.5 89 0.003 30.7 13.7 83 111-200 47-145 (405)
338 4imr_A 3-oxoacyl-(acyl-carrier 67.5 47 0.0016 30.4 11.4 100 111-218 33-138 (275)
339 3qiv_A Short-chain dehydrogena 67.3 53 0.0018 29.3 11.6 102 110-218 8-118 (253)
340 1zk4_A R-specific alcohol dehy 67.2 46 0.0016 29.6 11.1 102 112-218 7-111 (251)
341 1now_A Beta-hexosaminidase bet 66.6 18 0.0006 37.0 8.8 24 205-228 214-237 (507)
342 3ioy_A Short-chain dehydrogena 66.4 35 0.0012 32.1 10.5 101 112-219 9-117 (319)
343 3svt_A Short-chain type dehydr 66.1 47 0.0016 30.4 11.1 104 110-219 10-122 (281)
344 1ae1_A Tropinone reductase-I; 66.0 59 0.002 29.5 11.8 102 111-219 21-129 (273)
345 2ae2_A Protein (tropinone redu 65.7 69 0.0024 28.8 12.1 102 110-218 8-116 (260)
346 3nrc_A Enoyl-[acyl-carrier-pro 65.6 49 0.0017 30.3 11.1 101 112-218 27-137 (280)
347 2x9g_A PTR1, pteridine reducta 65.5 29 0.001 31.9 9.6 86 113-200 25-114 (288)
348 1w6u_A 2,4-dienoyl-COA reducta 65.4 51 0.0018 30.3 11.4 102 112-218 27-133 (302)
349 3rd5_A Mypaa.01249.C; ssgcid, 64.9 17 0.00058 33.7 7.8 79 111-200 16-94 (291)
350 1yb1_A 17-beta-hydroxysteroid 64.7 45 0.0015 30.3 10.7 83 110-198 30-115 (272)
351 3awd_A GOX2181, putative polyo 64.4 56 0.0019 29.2 11.2 102 111-218 13-120 (260)
352 4f21_A Carboxylesterase/phosph 64.4 80 0.0027 28.3 13.6 132 83-222 105-242 (246)
353 1fmc_A 7 alpha-hydroxysteroid 63.9 79 0.0027 28.0 12.2 102 111-218 11-116 (255)
354 1yxm_A Pecra, peroxisomal tran 63.8 61 0.0021 29.8 11.6 103 111-218 18-129 (303)
355 2d1y_A Hypothetical protein TT 63.6 71 0.0024 28.6 11.7 98 112-218 7-106 (256)
356 2b4q_A Rhamnolipids biosynthes 63.5 49 0.0017 30.3 10.7 100 112-218 30-134 (276)
357 2z1n_A Dehydrogenase; reductas 63.5 62 0.0021 29.1 11.3 101 112-218 8-114 (260)
358 1h5q_A NADP-dependent mannitol 63.4 67 0.0023 28.7 11.6 101 112-218 15-121 (265)
359 3cxt_A Dehydrogenase with diff 63.3 50 0.0017 30.5 10.8 101 111-218 34-140 (291)
360 1zem_A Xylitol dehydrogenase; 63.3 56 0.0019 29.5 11.0 102 111-218 7-114 (262)
361 4iiu_A 3-oxoacyl-[acyl-carrier 63.2 65 0.0022 29.1 11.5 100 112-218 27-133 (267)
362 1xkq_A Short-chain reductase f 62.9 41 0.0014 30.7 10.1 100 112-218 7-119 (280)
363 3gk3_A Acetoacetyl-COA reducta 62.9 61 0.0021 29.3 11.2 100 113-218 27-132 (269)
364 3s8m_A Enoyl-ACP reductase; ro 62.4 91 0.0031 30.8 12.7 83 111-200 61-160 (422)
365 3afn_B Carbonyl reductase; alp 62.3 73 0.0025 28.2 11.6 101 112-218 8-115 (258)
366 2cfc_A 2-(R)-hydroxypropyl-COM 62.3 50 0.0017 29.3 10.4 101 113-218 4-112 (250)
367 1yde_A Retinal dehydrogenase/r 62.1 50 0.0017 30.0 10.5 100 111-218 9-112 (270)
368 1xky_A Dihydrodipicolinate syn 62.0 47 0.0016 31.2 10.3 88 114-231 84-174 (301)
369 1xg5_A ARPG836; short chain de 61.8 69 0.0024 29.1 11.4 101 112-218 33-140 (279)
370 1spx_A Short-chain reductase f 61.7 43 0.0015 30.5 9.9 81 112-197 7-92 (278)
371 3p19_A BFPVVD8, putative blue 61.7 86 0.0029 28.4 12.0 99 112-219 17-117 (266)
372 2ehd_A Oxidoreductase, oxidore 61.7 50 0.0017 29.0 10.1 99 113-218 7-107 (234)
373 4h0c_A Phospholipase/carboxyle 61.6 62 0.0021 28.1 10.6 107 109-221 97-209 (210)
374 3tl3_A Short-chain type dehydr 61.6 21 0.00073 32.2 7.7 97 112-219 10-113 (257)
375 4e3z_A Putative oxidoreductase 61.6 41 0.0014 30.6 9.7 99 113-218 28-134 (272)
376 3tox_A Short chain dehydrogena 61.4 61 0.0021 29.7 11.0 101 112-219 9-116 (280)
377 2bgk_A Rhizome secoisolaricire 61.3 70 0.0024 28.8 11.4 101 112-218 17-123 (278)
378 2wkj_A N-acetylneuraminate lya 61.2 30 0.001 32.5 8.8 89 113-231 82-174 (303)
379 1g0o_A Trihydroxynaphthalene r 61.2 72 0.0025 29.1 11.5 100 112-218 30-136 (283)
380 1xhl_A Short-chain dehydrogena 61.0 41 0.0014 31.2 9.7 102 112-219 27-138 (297)
381 4eue_A Putative reductase CA_C 60.6 1.2E+02 0.0041 29.9 13.3 81 111-197 60-157 (418)
382 2yxg_A DHDPS, dihydrodipicolin 60.1 29 0.00099 32.4 8.4 90 113-231 71-163 (289)
383 2vc6_A MOSA, dihydrodipicolina 59.8 54 0.0019 30.5 10.3 89 114-231 72-163 (292)
384 1c7s_A Beta-N-acetylhexosamini 59.7 11 0.00039 40.9 6.1 26 203-228 392-417 (858)
385 2ehh_A DHDPS, dihydrodipicolin 59.2 38 0.0013 31.7 9.1 89 114-231 72-163 (294)
386 2dtx_A Glucose 1-dehydrogenase 58.9 61 0.0021 29.3 10.4 95 111-219 8-104 (264)
387 3kzv_A Uncharacterized oxidore 58.7 52 0.0018 29.6 9.8 100 114-219 5-109 (254)
388 1ja9_A 4HNR, 1,3,6,8-tetrahydr 58.6 48 0.0016 29.9 9.6 101 112-218 22-128 (274)
389 4b79_A PA4098, probable short- 58.2 54 0.0018 29.7 9.6 94 112-219 12-106 (242)
390 1f6k_A N-acetylneuraminate lya 57.8 37 0.0013 31.7 8.8 89 113-231 75-166 (293)
391 2rfg_A Dihydrodipicolinate syn 57.5 27 0.00092 32.8 7.7 88 114-231 72-162 (297)
392 1yo6_A Putative carbonyl reduc 57.4 99 0.0034 27.1 11.9 100 113-218 5-111 (250)
393 3uf0_A Short-chain dehydrogena 57.3 1.1E+02 0.0039 27.7 12.1 102 109-219 29-136 (273)
394 3qp9_A Type I polyketide synth 57.2 43 0.0015 34.2 9.8 104 109-219 248-372 (525)
395 2pd6_A Estradiol 17-beta-dehyd 57.2 72 0.0025 28.5 10.6 101 112-218 8-121 (264)
396 2ojp_A DHDPS, dihydrodipicolin 56.9 53 0.0018 30.6 9.7 86 114-230 73-162 (292)
397 3f1l_A Uncharacterized oxidore 56.8 89 0.003 27.9 11.1 105 111-219 12-123 (252)
398 1edo_A Beta-keto acyl carrier 56.7 1E+02 0.0035 27.0 11.6 100 113-218 3-108 (244)
399 4dry_A 3-oxoacyl-[acyl-carrier 56.5 48 0.0016 30.5 9.3 102 112-219 34-142 (281)
400 1gee_A Glucose 1-dehydrogenase 56.4 63 0.0022 28.9 10.0 101 112-218 8-114 (261)
401 3un1_A Probable oxidoreductase 56.3 57 0.002 29.5 9.7 96 112-219 29-126 (260)
402 3asu_A Short-chain dehydrogena 56.1 32 0.0011 31.0 7.8 99 114-219 3-105 (248)
403 2fwm_X 2,3-dihydro-2,3-dihydro 55.7 1E+02 0.0035 27.4 11.2 96 111-219 7-104 (250)
404 3h5d_A DHDPS, dihydrodipicolin 55.3 68 0.0023 30.2 10.2 95 92-218 62-160 (311)
405 2r8w_A AGR_C_1641P; APC7498, d 55.3 42 0.0014 32.0 8.7 88 114-231 106-196 (332)
406 2pju_A Propionate catabolism o 55.1 67 0.0023 28.7 9.6 76 113-201 40-116 (225)
407 2h7i_A Enoyl-[acyl-carrier-pro 54.7 77 0.0026 28.6 10.3 100 112-218 8-121 (269)
408 3qze_A DHDPS, dihydrodipicolin 54.2 60 0.002 30.7 9.6 89 113-231 94-185 (314)
409 1oaa_A Sepiapterin reductase; 54.1 1.2E+02 0.0041 27.0 11.7 103 112-219 7-125 (259)
410 2bd0_A Sepiapterin reductase; 54.1 84 0.0029 27.6 10.4 100 113-218 4-115 (244)
411 1o5k_A DHDPS, dihydrodipicolin 54.0 1E+02 0.0036 28.8 11.2 90 113-231 83-175 (306)
412 3guy_A Short-chain dehydrogena 53.8 40 0.0014 29.7 8.0 97 113-219 3-102 (230)
413 3vtz_A Glucose 1-dehydrogenase 53.5 86 0.003 28.4 10.5 96 110-218 13-110 (269)
414 3qfe_A Putative dihydrodipicol 53.1 86 0.0029 29.6 10.5 93 113-231 82-177 (318)
415 3f9i_A 3-oxoacyl-[acyl-carrier 53.0 51 0.0017 29.4 8.6 80 110-200 13-92 (249)
416 2zat_A Dehydrogenase/reductase 52.7 1.2E+02 0.0042 26.9 11.4 101 112-218 15-121 (260)
417 3i4f_A 3-oxoacyl-[acyl-carrier 52.7 78 0.0027 28.3 10.0 99 113-218 9-116 (264)
418 4a29_A Engineered retro-aldol 52.6 21 0.00073 32.7 5.7 81 137-233 81-161 (258)
419 2ph3_A 3-oxoacyl-[acyl carrier 52.5 1.1E+02 0.0038 26.8 10.9 100 113-218 3-109 (245)
420 3rku_A Oxidoreductase YMR226C; 51.5 35 0.0012 31.6 7.4 102 112-219 34-146 (287)
421 1xq1_A Putative tropinone redu 50.0 1.1E+02 0.0036 27.4 10.4 102 111-218 14-121 (266)
422 4da9_A Short-chain dehydrogena 49.9 71 0.0024 29.2 9.3 81 112-198 30-114 (280)
423 2hq1_A Glucose/ribitol dehydro 49.6 71 0.0024 28.2 9.1 81 112-198 6-90 (247)
424 3icc_A Putative 3-oxoacyl-(acy 49.5 83 0.0028 27.9 9.6 101 112-218 8-120 (255)
425 3oig_A Enoyl-[acyl-carrier-pro 49.3 69 0.0024 28.8 9.0 84 110-198 6-94 (266)
426 3flu_A DHDPS, dihydrodipicolin 49.3 78 0.0027 29.5 9.5 89 113-231 78-169 (297)
427 2qq5_A DHRS1, dehydrogenase/re 49.2 1E+02 0.0036 27.5 10.3 82 112-200 6-91 (260)
428 3cpr_A Dihydrodipicolinate syn 49.2 51 0.0017 30.9 8.2 88 114-231 88-178 (304)
429 3ruf_A WBGU; rossmann fold, UD 48.5 73 0.0025 29.9 9.4 32 111-142 25-56 (351)
430 1xu9_A Corticosteroid 11-beta- 48.2 1.6E+02 0.0054 26.7 11.7 102 112-218 29-135 (286)
431 3dm5_A SRP54, signal recogniti 48.0 71 0.0024 31.8 9.3 106 119-233 112-224 (443)
432 3mje_A AMPHB; rossmann fold, o 47.9 91 0.0031 31.5 10.3 99 113-218 241-349 (496)
433 3ctm_A Carbonyl reductase; alc 47.8 63 0.0021 29.3 8.5 82 111-198 34-118 (279)
434 3cpr_A Dihydrodipicolinate syn 47.7 66 0.0023 30.2 8.7 57 169-228 30-89 (304)
435 2wkj_A N-acetylneuraminate lya 47.2 57 0.002 30.6 8.2 58 169-229 25-85 (303)
436 2epl_X N-acetyl-beta-D-glucosa 47.2 1.4E+02 0.0047 31.2 11.7 108 107-228 41-162 (627)
437 1i4n_A Indole-3-glycerol phosp 46.6 32 0.0011 31.5 6.0 82 135-231 76-157 (251)
438 3l21_A DHDPS, dihydrodipicolin 46.5 63 0.0022 30.3 8.3 58 169-229 29-89 (304)
439 2hmc_A AGR_L_411P, dihydrodipi 46.4 1.5E+02 0.005 28.3 11.1 89 113-231 94-187 (344)
440 1e7w_A Pteridine reductase; di 45.9 82 0.0028 28.9 9.1 88 112-200 10-113 (291)
441 1mxh_A Pteridine reductase 2; 45.3 85 0.0029 28.4 9.0 82 113-200 13-102 (276)
442 2pzm_A Putative nucleotide sug 45.0 1.6E+02 0.0053 27.3 11.1 77 111-199 20-96 (330)
443 3krb_A Aldose reductase; ssgci 44.8 1.4E+02 0.0049 28.1 10.8 68 71-144 50-128 (334)
444 2nm0_A Probable 3-oxacyl-(acyl 44.0 83 0.0028 28.2 8.6 73 112-198 22-94 (253)
445 3t4x_A Oxidoreductase, short c 43.9 1.8E+02 0.0061 26.1 11.0 99 110-218 9-114 (267)
446 2qhx_A Pteridine reductase 1; 43.7 90 0.0031 29.4 9.1 88 112-200 47-150 (328)
447 2pd4_A Enoyl-[acyl-carrier-pro 43.7 1.8E+02 0.0062 26.1 11.7 100 112-218 7-117 (275)
448 2nwq_A Probable short-chain de 43.7 69 0.0024 29.2 8.1 100 113-218 23-127 (272)
449 3a5f_A Dihydrodipicolinate syn 43.5 53 0.0018 30.6 7.2 99 88-218 52-153 (291)
450 1wma_A Carbonyl reductase [NAD 43.5 1.5E+02 0.0051 26.3 10.4 80 113-198 6-89 (276)
451 3tak_A DHDPS, dihydrodipicolin 43.1 89 0.003 29.0 8.8 95 92-218 56-153 (291)
452 1qsg_A Enoyl-[acyl-carrier-pro 43.0 1.4E+02 0.0048 26.7 10.1 82 112-200 10-95 (265)
453 1ydn_A Hydroxymethylglutaryl-C 42.8 1.8E+02 0.006 26.9 10.9 94 135-230 72-176 (295)
454 2ekp_A 2-deoxy-D-gluconate 3-d 42.6 1E+02 0.0036 27.1 9.0 95 113-219 4-100 (239)
455 3r6d_A NAD-dependent epimerase 42.6 95 0.0032 26.8 8.6 72 113-198 7-80 (221)
456 3flu_A DHDPS, dihydrodipicolin 42.4 68 0.0023 30.0 7.8 58 169-229 21-81 (297)
457 3dz1_A Dihydrodipicolinate syn 42.1 62 0.0021 30.5 7.6 58 169-229 22-81 (313)
458 4hp8_A 2-deoxy-D-gluconate 3-d 42.0 44 0.0015 30.4 6.2 99 109-219 7-109 (247)
459 3dqp_A Oxidoreductase YLBE; al 41.7 86 0.0029 27.1 8.1 69 113-199 2-71 (219)
460 4dpp_A DHDPS 2, dihydrodipicol 41.4 81 0.0028 30.4 8.3 58 169-229 73-133 (360)
461 1cyd_A Carbonyl reductase; sho 41.4 1.7E+02 0.0057 25.6 10.2 97 111-218 7-105 (244)
462 2yl5_A Beta-N-acetylhexosamini 41.2 1.2E+02 0.004 30.2 9.7 27 202-228 86-112 (442)
463 3k31_A Enoyl-(acyl-carrier-pro 41.0 1.5E+02 0.0053 27.1 10.2 101 111-219 30-142 (296)
464 3gi1_A LBP, laminin-binding pr 40.9 1.9E+02 0.0066 26.6 10.7 83 134-233 178-261 (286)
465 3dz1_A Dihydrodipicolinate syn 40.9 52 0.0018 31.1 6.8 38 192-232 135-172 (313)
466 3d3w_A L-xylulose reductase; u 40.8 1.7E+02 0.0058 25.5 10.2 96 111-218 7-105 (244)
467 2et6_A (3R)-hydroxyacyl-COA de 40.5 2.1E+02 0.0071 29.6 11.9 97 113-219 324-425 (604)
468 1iv0_A Hypothetical protein; r 40.4 36 0.0012 26.1 4.6 59 171-234 36-96 (98)
469 2p91_A Enoyl-[acyl-carrier-pro 39.7 1.8E+02 0.0062 26.3 10.4 100 112-218 22-132 (285)
470 4fs3_A Enoyl-[acyl-carrier-pro 39.6 1.8E+02 0.0061 26.0 10.2 85 110-200 5-94 (256)
471 1y80_A Predicted cobalamin bin 39.5 1.3E+02 0.0043 26.2 8.8 97 111-224 60-167 (210)
472 3u0b_A Oxidoreductase, short c 39.4 1.3E+02 0.0043 30.0 9.8 99 113-219 215-318 (454)
473 4h15_A Short chain alcohol deh 38.9 1.3E+02 0.0046 27.2 9.2 97 109-219 9-110 (261)
474 3ozo_A N-acetylglucosaminidase 38.7 44 0.0015 34.5 6.2 24 205-228 250-273 (572)
475 2q1w_A Putative nucleotide sug 38.6 1.7E+02 0.006 27.0 10.3 100 113-225 23-129 (333)
476 1uzm_A 3-oxoacyl-[acyl-carrier 38.1 1.6E+02 0.0055 26.0 9.6 93 112-218 16-110 (247)
477 3m5v_A DHDPS, dihydrodipicolin 38.0 66 0.0023 30.1 7.0 57 170-229 22-82 (301)
478 3h7u_A Aldo-keto reductase; st 37.8 1.4E+02 0.0049 28.2 9.5 89 42-144 38-137 (335)
479 1u83_A Phosphosulfolactate syn 37.8 1.2E+02 0.0041 28.0 8.3 109 91-232 82-193 (276)
480 2wyu_A Enoyl-[acyl carrier pro 37.5 1.8E+02 0.0063 25.8 9.9 101 111-218 8-119 (261)
481 2gdz_A NAD+-dependent 15-hydro 37.3 97 0.0033 27.8 8.0 80 112-196 8-91 (267)
482 1w3i_A EDA, 2-keto-3-deoxy glu 37.3 88 0.003 29.1 7.7 52 169-223 13-64 (293)
483 3dhn_A NAD-dependent epimerase 37.3 1.1E+02 0.0037 26.5 8.1 69 113-198 6-74 (227)
484 2yl6_A Beta-N-acetylhexosamini 37.0 1.3E+02 0.0044 29.8 9.2 27 202-228 83-109 (434)
485 1f6k_A N-acetylneuraminate lya 36.8 82 0.0028 29.3 7.4 57 169-228 17-77 (293)
486 2r8w_A AGR_C_1641P; APC7498, d 36.8 88 0.003 29.7 7.7 57 170-229 49-108 (332)
487 3qze_A DHDPS, dihydrodipicolin 36.6 71 0.0024 30.1 7.0 58 169-229 37-97 (314)
488 2nuw_A 2-keto-3-deoxygluconate 36.5 85 0.0029 29.1 7.5 51 170-223 14-64 (288)
489 1tks_A 3,4-dihydroxy-2-butanon 36.5 54 0.0019 28.8 5.5 40 187-229 155-194 (204)
490 3i6i_A Putative leucoanthocyan 36.2 1E+02 0.0034 28.9 8.2 103 112-234 11-121 (346)
491 3b4u_A Dihydrodipicolinate syn 35.9 93 0.0032 28.9 7.6 52 169-223 17-68 (294)
492 2zcu_A Uncharacterized oxidore 35.7 1.2E+02 0.0041 27.2 8.4 93 114-225 2-96 (286)
493 1nu0_A Hypothetical protein YQ 35.6 60 0.002 26.6 5.5 59 171-234 38-99 (138)
494 3e48_A Putative nucleoside-dip 35.5 74 0.0025 28.9 6.9 102 114-233 3-107 (289)
495 3si9_A DHDPS, dihydrodipicolin 35.2 1.8E+02 0.0062 27.3 9.6 95 92-195 77-182 (315)
496 1x7f_A Outer surface protein; 34.8 1E+02 0.0036 29.9 7.8 88 174-282 39-127 (385)
497 2nly_A BH1492 protein, diverge 34.7 1.4E+02 0.0048 27.0 8.3 75 150-231 46-134 (245)
498 3grk_A Enoyl-(acyl-carrier-pro 34.5 2.2E+02 0.0076 25.9 10.1 100 111-218 31-142 (293)
499 2ojp_A DHDPS, dihydrodipicolin 34.5 1E+02 0.0034 28.6 7.6 52 169-223 15-66 (292)
500 1sby_A Alcohol dehydrogenase; 34.4 1.3E+02 0.0044 26.7 8.2 81 111-196 5-89 (254)
No 1
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1e-63 Score=515.98 Aligned_cols=427 Identities=56% Similarity=1.058 Sum_probs=363.5
Q ss_pred CccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccc
Q 011801 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIA 80 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (477)
|+|||+.|++..|+++|+||++|++|.+|+|+++.||.++|+||+++|+++.+.+.+++.+++....+..+|...++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (435)
T 3piu_A 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELA 80 (435)
T ss_dssp -----------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHH
T ss_pred CCccchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCcccccccccccccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999998766555555655566778
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|++.+|.++||+++|+++++.++..+.+++++|++|+|+++|+..++.++.++||.|+++.|+|+++...+....|.++
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEE
Confidence 89999999999999999999877766778899999999999999999999999999999999999999888774349999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
++++++.+++|.+|+++|++++++..+.+.++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|++++|++
T Consensus 161 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~ 240 (435)
T 3piu_A 161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240 (435)
T ss_dssp EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 99999877789999999999998877667789999999999999999999999999999999999999999999988888
Q ss_pred CCcccHHHhhhhccCC-----CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCCh
Q 011801 241 PKFTSVAEVIQEMDCN-----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~-----~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~ 315 (477)
..+.++..+..+.+++ ++++++++||||.+|++|+|+||++++++.+...+++...++.+++++|.+++.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (435)
T 3piu_A 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDK 320 (435)
T ss_dssp SCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCH
T ss_pred CCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCh
Confidence 7777777765421111 57899999999999999999999999888787777777777778999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+++++++++.+++++++++.+.+.|++.|+++..+.+|+|+|++++..........+.++++.+++++||.+.||+.|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 321 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 87777888899999999999999999999999999999999999987554444445567888888888999999999988
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++++||+++..+++++++++++|++++++.
T Consensus 401 ~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 401 TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 78899999998669999999999999999764
No 2
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=2.5e-58 Score=474.63 Aligned_cols=424 Identities=73% Similarity=1.280 Sum_probs=351.3
Q ss_pred cccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccccc
Q 011801 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIF 82 (477)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (477)
+||+.+..+.+.++.+||++|++|..++||+..+|.++|+|+.++|+++++.+++++...+...++. ++...+.....|
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhcccccccc-ccccccHhhcCC
Confidence 5899999999999999999999999999999999999999999999999999999998765443322 222222345689
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 83 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
++..|..++|+++|+++++.+|..+.+++++|++|+|+++++.+++.+++++||.|+++.|+|+++...+....|+++++
T Consensus 80 ~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~ 159 (428)
T 1iay_A 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEE
Confidence 99889999999999999988775555778999999999999999999999999999999999999887554334999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++.+++|.+|+++|++++++....+.++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++..
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~ 239 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC
Confidence 99876567899999999999865545568999999999999999999999999999999999999999999988787655
Q ss_pred cccHHHhhhhc---cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEM---DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~---~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+.++..+..+. ++..+++++++||||.+|++|+|+||++++++.+.+.+++...++.+++++|.++..+|.+.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 319 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHH
Confidence 56666554310 012588999999999999999999999997776766666666666689999999999999987657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+++++.+++++++++.+.+.|++.|+++.++.+|+|+|++++............++++.+++++||.++||+.|+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~ 399 (428)
T 1iay_A 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPG 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 78888999999999999999999998888887899999999864322222334467788887779999999988866678
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++||+++..+++++++++++|++++++.
T Consensus 400 ~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 400 WFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 9999998669999999999999998763
No 3
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=5.5e-48 Score=392.00 Aligned_cols=351 Identities=20% Similarity=0.382 Sum_probs=285.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|.+++|+++|+++++.+| +.+++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~ 95 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEE
Confidence 346899999988764 3445555443210 1134688888999999999999988776 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |.+++.++++.+++|.+|+++|++++++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 168 (385)
T 1b5p_A 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (385)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEE
Confidence 9999999999999999999999999999999999888877 9999999997656789999999988753 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++||||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+ . . +++++++||||.+|++|+
T Consensus 169 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~-~----~-~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRV-A----P-EHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGT-C----T-TTEEEEEESTTTTTCGGG
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHc-C----C-CCEEEEEechhhcCCccc
Confidence 999999999999999999999999999999999999999887765 44555444 1 2 789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.+... ...++.+.|.++..+|++.+...+++++.+++++++++.+.+.|+++|+++..+++|
T Consensus 242 RiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 320 (385)
T 1b5p_A 242 RIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (385)
T ss_dssp CCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred ceEEEEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 9999999554 4444444332 235788999999889876211134578888999999999999999889988889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. .. +..++++.++ ++||.+.||+.|+. ++++||+++ .+++++++++++|+++++
T Consensus 321 ~~~~~~~~~~----~~-~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 321 FYVLMDTSPI----AP-DEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp TEEEEECTTT----CS-SHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred EEEEEecCCC----CC-CHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 9999998731 01 1235777777 67999999999964 689999999 589999999999987764
No 4
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=1.3e-46 Score=394.99 Aligned_cols=374 Identities=20% Similarity=0.321 Sum_probs=297.6
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
++|+++.+....+.+.++.+....... .+ .....|++..|.+++|+++|+++++.+| +.+++++|++|+
T Consensus 96 ~~i~~~~~~~~~p~~~~~~a~~~l~~~-----~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~ 164 (500)
T 3tcm_A 96 DLLQREEIKTLFSADSISRAKQILAMI-----PG----RATGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLTD 164 (500)
T ss_dssp GGGGCTTHHHHSCHHHHHHHHHHHTTS-----TT----SCSSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEES
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHcC-----CC----CcCCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEcC
Confidence 456666654444555555543221100 00 1346799999999999999999988776 457889999999
Q ss_pred ChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 119 GATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 119 G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+++++.+++.+++ ++||.|+++.|+|+.+...++.. |.++++++++++++|.+|+++|++++++....+.++++|++
T Consensus 165 G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl 243 (500)
T 3tcm_A 165 GASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH-GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVV 243 (500)
T ss_dssp SSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT-TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999998 89999999999999999988877 99999999998888999999999999987666778999999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccC--CCCcEEEEecCCccc-CCC
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDC--NRDLIHIIYSLSKDM-GLP 273 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~--~~~~viiv~SlSK~~-g~~ 273 (477)
+||+||||.+++.+++++|+++|+++|+++|+||+|.+++|++ ..+.++..+..+.+. ...++++++||||.| |++
T Consensus 244 ~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 323 (500)
T 3tcm_A 244 INPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC 323 (500)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG
T ss_pred ECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC
Confidence 9999999999999999999999999999999999999988864 456777665443211 234578899999999 999
Q ss_pred CceEEEEEe---CCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChh--------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 011801 274 GFRVGIVYS---FNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDE--------FVDNFLVETSKRLAKRHHNFTKGLE 341 (477)
Q Consensus 274 G~RvG~i~~---~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~--------~~~~~~~~~~~~l~~r~~~l~~~L~ 341 (477)
|+|+||+++ +++ +.+.+.+.. .....+.+.|.++..++.+.+ + .+++.+.+++++++++.+.+.|+
T Consensus 324 G~R~G~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~L~ 401 (500)
T 3tcm_A 324 GKRGGYFEITGFSAP-VREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALEHAFN 401 (500)
T ss_dssp GGCCEEEEEESCCTT-HHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCCHH-HHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 444 444444333 345577899999999997532 3 45567778899999999999999
Q ss_pred hC-CCeEecCCceEEEEeecc--chh-h---ccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHH
Q 011801 342 QV-GINCLKSNAGLFFWMDLR--HLL-K---EKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTL 413 (477)
Q Consensus 342 ~~-gi~~~~~~~g~~~~~~l~--~~~-~---~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l 413 (477)
++ |+++.++++|+|+|+++. ... . ......+..++..++++.||.+.||+.|+. .+.++||++|+ .+++++
T Consensus 402 ~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i 480 (500)
T 3tcm_A 402 KLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKI 480 (500)
T ss_dssp TSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTH
T ss_pred cCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHH
Confidence 98 999999999999996553 211 0 011122334567788888999999999985 45679999999 689999
Q ss_pred HHHHHHHHHHHhhh
Q 011801 414 QVALNRIAAFVQQD 427 (477)
Q Consensus 414 ~~~l~~l~~~~~~~ 427 (477)
++++++|++++++.
T Consensus 481 ~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 481 PAVISRFTVFHEAF 494 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 5
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=7.3e-46 Score=377.05 Aligned_cols=352 Identities=20% Similarity=0.315 Sum_probs=288.0
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCC-
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPD- 112 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~- 112 (477)
...++|+|+.+++.++ ++.+.+.+.+.. .....|++..|.+++|+++|+++.+.+| +. ++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 92 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASL-------------HELEKYPLTAGLPELRQACANWLKRRYD--GLTVDADN 92 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTTT
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHh-------------hhccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCCC
Confidence 3557899999998885 466777776642 2456899888999999999999988776 33 5688
Q ss_pred cEEEeCChHHHHHHHHHHhcCCC-----CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPG-----DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~G-----d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|++|+|+++|+.+++.+++++| |.|+++.|+|+++...++.. |.+++.++++ .++|.+|+++|++++++
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~g~~~d~~~l~~~~~~--- 167 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLG-GGEIHFANCP-APSFNPDWRSISEEVWK--- 167 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHT-TCEEEEEECC-TTTCCCCGGGSCHHHHH---
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHc-CCEEEEeecC-CCCCccCHHHHHHhhcc---
Confidence 99999999999999999999997 79999999999999888876 9999999984 46788999999999875
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++....+........+...+++++++|||
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 244 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLS 244 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEEST
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccc
Confidence 79999999999999999999999999999999999999999999987776333444332211111357899999999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
|.+|++|+|+||++++++ +.+.+.... ..+.++.+.|.++..+|.+.+ ++.+.+++++++++.+.+.|++. +
T Consensus 245 K~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~-~ 318 (396)
T 3jtx_A 245 KRSNVPGLRSGFVAGDAE-LLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVIPILQQV-F 318 (396)
T ss_dssp TTSSCGGGCCEEEEECHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHTTT-S
T ss_pred cccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 999999999999998554 444444332 224578899999999888744 46788889999999999999876 5
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANMDDDTLQVALNR 419 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~~~e~l~~~l~~ 419 (477)
.+..+.+|+|+|++++.. ...+++..+++++||.+.||+.|+. ..++++||+++. +++++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~ 390 (396)
T 3jtx_A 319 DVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAED 390 (396)
T ss_dssp CCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHH
T ss_pred CccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHH
Confidence 566788899999999851 1235778888888999999999875 346899999986 99999999999
Q ss_pred HHHHH
Q 011801 420 IAAFV 424 (477)
Q Consensus 420 l~~~~ 424 (477)
|++++
T Consensus 391 l~~~l 395 (396)
T 3jtx_A 391 IVSLY 395 (396)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 6
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=389.61 Aligned_cols=360 Identities=19% Similarity=0.298 Sum_probs=289.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.++ ++.+.+.+.+.-+. .....|++..|.+++|+++|+++.+.+| +.+++++|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~ 122 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI-----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVT 122 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS-----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 457899999886653 45666666553210 0245798888999999999999988776 446788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCC----------CcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN----------NFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~----------~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++..+ +|.+|+++|++++++
T Consensus 123 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 200 (447)
T 3b46_A 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC-GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS- 200 (447)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-
Confidence 9999999999999999999999999999999999988876 9999999987543 688999999988753
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh-hhhccCCCCcEEEEe
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV-IQEMDCNRDLIHIIY 264 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~-~~~~~~~~~~viiv~ 264 (477)
++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++ .+.++..+ .. ..+++++++
T Consensus 201 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~----~~~~~i~i~ 270 (447)
T 3b46_A 201 -----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPE----IGQLTLTVG 270 (447)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHH----HHTTEEEEE
T ss_pred -----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCC----CCCcEEEEe
Confidence 78999999999999999999999999999999999999999999988876 33444433 11 236789999
Q ss_pred cCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011801 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ 342 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 342 (477)
|+||.+|++|+|+||+++.++.+.+.+... ...+.++++.|.++..+|+.... +.++++.+++++++++.+.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999344444444332 22334788999999888876533 566888899999999999999999
Q ss_pred CCCeEecCCceEEEEeeccchhhccC---------chHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccC
Q 011801 343 VGINCLKSNAGLFFWMDLRHLLKEKT---------LEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANM 408 (477)
Q Consensus 343 ~gi~~~~~~~g~~~~~~l~~~~~~~~---------~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~ 408 (477)
.|+++..+.+|+|+|++++....... .....++++.+++++||.+.||+.|+.. +++++|+|++.
T Consensus 350 ~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~- 428 (447)
T 3b46_A 350 LGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK- 428 (447)
T ss_dssp HTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-
T ss_pred CCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-
Confidence 99998888999999999975210000 0123467788887789999999988753 26899999986
Q ss_pred CHHHHHHHHHHHHHH
Q 011801 409 DDDTLQVALNRIAAF 423 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~ 423 (477)
+++++++++++|+++
T Consensus 429 ~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 429 DDAYLENAVERLKLL 443 (447)
T ss_dssp CHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999873
No 7
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=5.5e-46 Score=379.41 Aligned_cols=344 Identities=15% Similarity=0.169 Sum_probs=268.9
Q ss_pred ccccccccccc------cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN------QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.++. +..++.+.+... ... .-.....|++..|.++||+++++|+.+..+ ..+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~----------~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 95 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVT----------ENYKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIED 95 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHH----------HHCCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTT
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-Hhc----------CCCCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccc
Confidence 36899998861 223455666532 100 001345799999999999999999976544 33456
Q ss_pred Cc--EEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DR--IVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~--i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++ |++|.|+++|+.+++.++.. | |.|++++|+|+.|...++.. |.+++++++..+++|.+|+++|++++++.
T Consensus 96 ~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 171 (405)
T 3k7y_A 96 KKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-GFNLKYINFFDYNLIDINYDLFLNDLRNI-- 171 (405)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-TCEEEEECCEETTTTEECHHHHHHHHHHS--
T ss_pred cceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-CCeEEEEeccccccCCcCHHHHHHHHHhC--
Confidence 65 59999999999999999987 8 99999999999999998877 99999999854557999999999998752
Q ss_pred hCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEe
Q 011801 188 ASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIY 264 (477)
Q Consensus 188 ~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~ 264 (477)
.+.+++++++| |||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..+++++++
T Consensus 172 --~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~ 245 (405)
T 3k7y_A 172 --PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE----KNIAFSVCQ 245 (405)
T ss_dssp --CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT----TTCCEEEEE
T ss_pred --CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh----cCCcEEEEe
Confidence 24577777665 89999999999999999999999999999999999877542 2234444433 347899999
Q ss_pred cCCcccCCCCceEEEEEe--CCHHHHHH----HHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHH
Q 011801 265 SLSKDMGLPGFRVGIVYS--FNDTVVNC----GRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRH 333 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~--~~~~i~~~----~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~ 333 (477)
||||.||++|+|+||+++ .++.+... +.+. ..+...+.++|.+++.+|.++++. .+++++.+++++++|
T Consensus 246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R 325 (405)
T 3k7y_A 246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR 325 (405)
T ss_dssp ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 45544332 2222 234445679999999999886432 445677788899999
Q ss_pred HHHHHHHh----hCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 334 HNFTKGLE----QVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 334 ~~l~~~L~----~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
+.+.+.|+ ++| +++.++++|+|+|++++. +++..+ +++||.+.||. |||+
T Consensus 326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~----------Ris~ 383 (405)
T 3k7y_A 326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG----------RINV 383 (405)
T ss_dssp HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----------EEEG
T ss_pred HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----------eEEE
Confidence 99999999 776 577889999999998863 123455 78899999862 9999
Q ss_pred ccCCHHHHHHHHHHHHHHHhh
Q 011801 406 ANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+..++++++.++++|+++++.
T Consensus 384 a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 384 SGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GGCCTTHHHHHHHHHHHHHHC
T ss_pred eccCHHHHHHHHHHHHHHHhh
Confidence 988899999999999999864
No 8
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=2.1e-48 Score=400.68 Aligned_cols=357 Identities=15% Similarity=0.173 Sum_probs=281.8
Q ss_pred hccCCCCCCccchhhhhhc------CC-----CCCCCCCCccccccccccccccH-HHHHHHHHhCCCCccccccccccc
Q 011801 9 TNNGHGEDSAYFDGWKAFD------RN-----PFHPTQNPGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVF 76 (477)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~ 76 (477)
++++||+ +||+|| +|+ .| ||++..+|+++|+|+.+++.+++ +.+.+.+.+.- . ..+
T Consensus 19 ~~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l----~-~~~---- 86 (427)
T 2hox_A 19 NCSEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAV----L-VSP---- 86 (427)
T ss_dssp CCGGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCE----E-ECT----
T ss_pred ccCcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhh----h-cCC----
Confidence 6899999 899999 888 67 99999999999999999998764 33444443321 0 011
Q ss_pred ccccccCCCC-C---cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--------cCCCCeEEEcCCC
Q 011801 77 KDIAIFQDYH-G---LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--------ANPGDAFLVPSPY 144 (477)
Q Consensus 77 ~~~~~Y~~~~-G---~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--------~~~Gd~vlv~~P~ 144 (477)
.....|++.. | .++||++||+|+++..+ +.+++++|++|+|+++++.+++.+| ++|||.|++++|+
T Consensus 87 ~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~ 164 (427)
T 2hox_A 87 WHRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164 (427)
T ss_dssp TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSC
T ss_pred cccccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCC
Confidence 0112498888 9 99999999999987544 4568999999999999999999999 8999999999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
|+.|...++.. |.+++.+ .+|+++|++++++ ++|+|+++|||||||.+++ +.+ + +
T Consensus 165 y~~~~~~~~~~-g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~ 219 (427)
T 2hox_A 165 YPVFREQTKYF-DKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--G 219 (427)
T ss_dssp CHHHHHHHHHS-CBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--T
T ss_pred cccHHHHHHHc-CCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--C
Confidence 99999998887 8887643 4567777776643 6889999999999999999 522 2 5
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCch
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSS 302 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~ 302 (477)
+..|.|++|. + ++.++..+ ..+++++++||||.+|++|+|+||++++++.+.+.++++..+ ..++.
T Consensus 220 ~~~i~d~~~~----~--~~~s~~~~------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~ 287 (427)
T 2hox_A 220 CKSIYDMVYY----W--PHYTPIKY------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPR 287 (427)
T ss_dssp CEEEEECTTC----S--TTTSCCCS------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCH
T ss_pred CCEEEeeccc----C--CCCCcccc------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCH
Confidence 5677777763 3 12332222 246889999999999999999999999766676666655433 45889
Q ss_pred HHHHHHHHhcCCh-hhH-------HHHHHHHHHHHHHHHHHHHHHHhhC-CCeE--------------ecCCceEEEEee
Q 011801 303 QTQYLLASMLSDD-EFV-------DNFLVETSKRLAKRHHNFTKGLEQV-GINC--------------LKSNAGLFFWMD 359 (477)
Q Consensus 303 ~~q~~~~~~L~~~-~~~-------~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~--------------~~~~~g~~~~~~ 359 (477)
++|.++..+|.+. +++ ++++++.+++++++++.+.+.|++. |+.+ ..+++|+|+|++
T Consensus 288 ~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~ 367 (427)
T 2hox_A 288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK 367 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred HHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEE
Confidence 9999999999864 221 4567888899999999999999987 6543 346679999999
Q ss_pred ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 360 l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++. .. .+++..+++++||.|+||+.|+. ++++|||||+. +++++++++++|++++++
T Consensus 368 ~~~--~~------~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 368 CEW--EE------DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ECS--GG------GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred CCC--cH------HHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 985 11 24677788788999999999987 68899999997 899999999999999965
No 9
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.9e-45 Score=381.06 Aligned_cols=358 Identities=19% Similarity=0.325 Sum_probs=287.6
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+++.+.+.+.+.-. +. ......|++..|.++||+++|+++.+.+| ++ ++++|+
T Consensus 77 ~~i~l~~g~p~~~~~p~~~v~~a~~~~l~------~~---~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v~ 144 (448)
T 3aow_A 77 DIISLAGGLPNPKTFPKEIIRDILVEIME------KY---ADKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDIM 144 (448)
T ss_dssp SSEECCCCCCCGGGSCHHHHHHHHHHHHH------HS---HHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEEE
T ss_pred CcEeCCCCCCCchhCCHHHHHHHHHHHHH------hh---hHHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhEE
Confidence 68999776532 255666666554210 00 01235798888999999999999976666 33 789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+++++.+++++||.|+++.|+|+++...++.. |.++++++++.+ .+|+++|+++++.....+.++++|
T Consensus 145 ~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 145 ITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEE
Confidence 9999999999999999999999999999999999988876 999999998753 389999999987321122478987
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.|++..+.++..+. ..+++++++||||.+| ||
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~-----~~~~vi~~~S~SK~~~-~G 294 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD-----NEGRVIYLGTFSKILA-PG 294 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC-----TTSCEEEEEESTTTTC-GG
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC-----CCCCEEEEccchhhcc-cc
Confidence 4689999999999999999999999999999999999999888766555655541 3468999999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~ 349 (477)
+|+||++++++ +.+.+.... .....++++|.++..+|++..+ ++++++.++.++++++.+.+.|++. |+.+..
T Consensus 295 lriG~v~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~ 372 (448)
T 3aow_A 295 FRIGWMVGDPG-IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK 372 (448)
T ss_dssp GCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred ccEEEEEeCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC
Confidence 99999999654 444443322 1234688999999999987655 6778889999999999999999875 788888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+|+|+|++++...+ ..++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|++++++.
T Consensus 373 p~~g~~~~v~~~~~~~------~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 373 PEGGMFIWVTLPDGID------SKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCC------HHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999985321 23577778776 9999999998753 4689999998768999999999999998753
No 10
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=1e-45 Score=375.26 Aligned_cols=357 Identities=22% Similarity=0.385 Sum_probs=290.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc-EE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-IV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-+ .....|++..|..++|+++|+++.+.+| +.+++++ |+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 91 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIM 91 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 36799999988763 4556665554210 1124688878999999999999987666 4467889 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (389)
T 1gd9_A 92 VLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRAL 164 (389)
T ss_dssp EESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCCccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 9999999987545688999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|+
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 240 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG----MFERTITVNGFSKTFAMTGW 240 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT----CGGGEEEEEESTTTTTCGGG
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC----CCCCEEEEecChhhcCCccc
Confidence 99999999999999999999999999999999999999988776543445544321 24678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||+++++ .+.+.+..... .+.++++.|.++..+|+.... ++++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 241 r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (389)
T 1gd9_A 241 RLGFVAAPS-WIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGA 318 (389)
T ss_dssp CCEEEECCH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBT
T ss_pred ceEEEEECH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCee
Confidence 999999965 44444443322 345788999999999987532 34678888999999999999999989888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++... . +..++++.+++++||.+.||+.|+..+++++||+++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 319 FYIFPRIRDTG----L-TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp TEECCBCGGGT----C-CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeccCCC----C-CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 99999987410 1 1235777777677999999998876567899999996 9999999999999998763
No 11
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.2e-46 Score=379.32 Aligned_cols=360 Identities=21% Similarity=0.318 Sum_probs=286.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i 114 (477)
..++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.+++ ++|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v 102 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR-----------EDTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEA 102 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC--------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCE
Confidence 446899999988764 46677766664211 0134688778999999999999977666 44577 799
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++++
T Consensus 103 ~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~ 175 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESIP------KPRM 175 (412)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH-TCEEEEEECSTTSCHHHHHHHHHHTEES------CCSE
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHhccc------CceE
Confidence 99999999999999999999999999999999999888877 9999999987655777888998887742 7889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|
T Consensus 176 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG----AKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----GGGTEEEEEECC-CCSCTT
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC----ccCcEEEEecCccccCCcc
Confidence 999999999999999999999999999999999999999988776654455554421 1467899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||+++++ .+.+.+..... .+.++.++|.++..+|++. ++++++.+++++++++.+.+.|++.|+++..+.+
T Consensus 252 ~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 327 (412)
T 2x5d_A 252 WRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKA 327 (412)
T ss_dssp SCCEEEEECH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSB
T ss_pred cceEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCe
Confidence 9999999954 44444443322 3457889999998888763 2357778888999999999999988988888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+|+|++++..... .+..+++..+++++||.+.||+.|+..+++++||+++. +++++++++++|++++++..
T Consensus 328 g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 328 SMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp SSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999999743210 11235777787777999999999876567899999997 89999999999999997643
No 12
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=384.37 Aligned_cols=346 Identities=22% Similarity=0.321 Sum_probs=276.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCccchHHHHhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGD----AFLVPSPYYAAFDRDLSW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd----~vlv~~P~y~~~~~~~~~ 154 (477)
...|++..|.+++|++||+|+.+.+| ++.+++++|++|+|+++|+.+++.+|+++|| .|+++.|+|+.|...++.
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 45799999999999999999987763 1556899999999999999999999999875 999999999999988887
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |.++++++++++++|.+|+++|++++++... +.++++|+++||+||||.+++.+++++|+++|+++|++||+||+|.
T Consensus 201 ~-g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 L-DAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp T-TCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred c-CCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 7 9999999999888899999999999986532 2368999999999999999999999999999999999999999999
Q ss_pred ccccCCC-CcccHHHhhhhccC---CCCcEEEEecCCccc-CCCCceEEEEEe--CCHHHHHHHHHh-cccCCCchHHHH
Q 011801 235 ATVFSSP-KFTSVAEVIQEMDC---NRDLIHIIYSLSKDM-GLPGFRVGIVYS--FNDTVVNCGRKM-SSFGLVSSQTQY 306 (477)
Q Consensus 235 ~~~~~~~-~~~s~~~~~~~~~~---~~~~viiv~SlSK~~-g~~G~RvG~i~~--~~~~i~~~~~~~-~~~~~vs~~~q~ 306 (477)
.++|++. .+.++..+..+.+. ...++++++||||.+ |++|+|+||++. .++.+.+.+.+. ..+...+.+.|.
T Consensus 279 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~ 358 (498)
T 3ihj_A 279 DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQA 358 (498)
T ss_dssp TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHH
Confidence 9888764 66777776542210 123578999999999 899999999984 455565555443 344556789999
Q ss_pred HHHHhcCC-----hhh--HHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhh------ccCchHH
Q 011801 307 LLASMLSD-----DEF--VDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLK------EKTLEGE 372 (477)
Q Consensus 307 ~~~~~L~~-----~~~--~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~------~~~~~~e 372 (477)
++..++.+ +.+ ..+...+.+++++++++.+.+.|.++ |+++.++++|+|+|++++.... ......+
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~ 438 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPD 438 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHH
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcH
Confidence 99999975 222 02234567788999999999999998 9999999999999987642111 0112233
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++..+++++||.+.||+.|+. .++++||++|+ .+++++++++++|++++++..
T Consensus 439 ~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 439 MFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp HHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHH
Confidence 33467788888999999999985 45679999997 689999999999999997643
No 13
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=4.9e-46 Score=381.74 Aligned_cols=363 Identities=19% Similarity=0.328 Sum_probs=295.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. .+ .....|++..|.+++|+++|+++++.+| +.+++ ++|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~------~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~ 95 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVS------GD----FMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 95 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHH------SC----GGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHh------CC----CccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEE
Confidence 36899999998764 4556666555211 00 0245798888999999999999998777 44667 6999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC----------CCCcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI----------SNNFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~----------~~~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++. .++|.+|+++|++++++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~- 173 (422)
T 3fvs_A 96 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS- 173 (422)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-
T ss_pred EECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHc-CCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-
Confidence 9999999999999999999999999999999999888877 99999999875 24788999999988753
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++|
T Consensus 174 -----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 244 (422)
T 3fvs_A 174 -----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG----MWERTLTIGS 244 (422)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEE
T ss_pred -----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc----ccCcEEEEec
Confidence 7999999999999999999999999999999999999999999998888766666655432 3478899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
+||.+|++|+|+||++++++.+ ..+.... ..+.++++.|.++..+|.+ ..+ +.++++.+++++++++.+.+
T Consensus 245 ~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 322 (422)
T 3fvs_A 245 AGKTFSATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRDHMIR 322 (422)
T ss_dssp HHHHHTCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceEEEEEeCHHHH-HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999966544 4333322 2345788999998888864 112 44577888999999999999
Q ss_pred HHhhCCCeEecCCceEEEEeeccchhhccC-------chHHHHHHHHHHHhcCeEEeCCCCCCC-----CCCCEEEEEec
Q 011801 339 GLEQVGINCLKSNAGLFFWMDLRHLLKEKT-------LEGEIALWRTIVNDVKLNVSPGSSFQC-----TEPGWFRVCFA 406 (477)
Q Consensus 339 ~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~-------~~~e~~l~~~ll~~~gI~v~pg~~f~~-----~~~~~~Rl~~~ 406 (477)
.|++.|+.+..+.+|+|+|++++....... .....+++..+++++||.+.||+.|+. .+++++|++++
T Consensus 323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 402 (422)
T 3fvs_A 323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV 402 (422)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec
Confidence 999999998889999999999975321110 000336788888888999999999864 35789999999
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 011801 407 NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~~~ 426 (477)
. +++++++++++|++++++
T Consensus 403 ~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 403 K-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp C-CHHHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHHhh
Confidence 6 999999999999998864
No 14
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=8.7e-46 Score=378.42 Aligned_cols=353 Identities=22% Similarity=0.341 Sum_probs=287.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.+++ ++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTI-----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTC-----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 45899999998764 45666666553110 1234688878999999999999977666 44566 7999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++. ++|.+|+++|+++++. ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA-DGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT-TCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999888876 99999999875 5788999999998864 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+.. ..+++++++||||.+|++|+
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~----~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASEN----GKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTT----HHHHEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCC----CCCCEEEEEecchhccCchh
Confidence 999999999999999999999999999999999999999877755 2344443321 13678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.... ..+.++.+.|.++..+|++. +.++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 261 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 336 (404)
T 2o1b_A 261 RVGFAVGNKD-MIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGG 336 (404)
T ss_dssp CCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBS
T ss_pred heEeEecCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcc
Confidence 9999999554 444444332 22457889999998888763 44678888899999999999999999998888899
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++...+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|+++++++
T Consensus 337 ~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 337 IYVWLETPPGYD------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp SEEEEECCTTCC------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred eEEEEeCCCCCC------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence 999999974221 225777788777999999999875557899999996 8899999999999988763
No 15
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=4.9e-46 Score=380.06 Aligned_cols=359 Identities=21% Similarity=0.335 Sum_probs=291.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++++.+| +.+++ ++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i~ 89 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFI-----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEIL 89 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTC-----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 47899999988764 45566666553110 1345798888999999999999998777 45677 8999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC---------CCCcccCHHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI---------SNNFKITREALEAAYERAQ 186 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~---------~~~f~i~~~~l~~~~~~~~ 186 (477)
+|+|+++|+..++.+++++||.|+++.|+|+.+...++.. |.+++.++++. ..+|.+|++++++++++
T Consensus 90 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA-GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 9999999999999999999999999999999999888877 99999999863 24678999999988753
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++||
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~ 238 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG----MWERTITIGSA 238 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----CGGGEEEEEEH
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC----ccCeEEEEecc
Confidence 7999999999999999999999999999999999999999999998887766666655532 45789999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
||.+|++|+|+||++++++.+ ..+.... ..+.++++.|.++..+|.+ ..+ +.++++.+++++++++.+.+.
T Consensus 239 sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 316 (410)
T 3e2y_A 239 GKTFSVTGWKLGWSIGPAHLI-KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVRL 316 (410)
T ss_dssp HHHSSCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceEEEEEECHHHH-HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999966544 4333332 2345788999998888863 111 345778888999999999999
Q ss_pred HhhCCCeEecCCceEEEEeeccchhhccC-----chHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccCC
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLKEKT-----LEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANMD 409 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~~~~-----~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~~ 409 (477)
|++.|+.+..+++|+|+|++++....... ...+.+++..+++++||.+.||+.|+.. +++++||+++. +
T Consensus 317 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~ 395 (410)
T 3e2y_A 317 LNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-K 395 (410)
T ss_dssp HHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-C
T ss_pred HHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-C
Confidence 99999999999999999999975322110 1123467788888889999999998753 35899999986 9
Q ss_pred HHHHHHHHHHHHHH
Q 011801 410 DDTLQVALNRIAAF 423 (477)
Q Consensus 410 ~e~l~~~l~~l~~~ 423 (477)
++++++++++|+++
T Consensus 396 ~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 396 DSTLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999763
No 16
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=4.8e-45 Score=375.70 Aligned_cols=359 Identities=19% Similarity=0.313 Sum_probs=291.2
Q ss_pred cccccccccccc-----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 38 GGVIQLGLAENQ-----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 38 ~~~i~l~~~~n~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.++|+|+.+... .+++.+.+.+.+.-. -.....|++..|.+++|+++|+++++. + +.++++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~-----------~~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~~ 119 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALD-----------SGKYNGYAPSIGFLSSREEIASYYHCP-E--APLEAK 119 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHH-----------HCCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCGG
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHh-----------cCcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCChH
Confidence 368999988742 244556665554210 012347888889999999999999864 3 456789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++|+++++.++.++||+|+++.|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~ 192 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESM-GIEVKLYNLLPEKSWEIDLKQLEYLIDE------KT 192 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHSSCCT------TE
T ss_pred HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc------CC
Confidence 9999999999999999999999999999999999999888877 9999999987767889999999988754 68
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. ....+++++||||.||+
T Consensus 193 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~-----~~~~vi~~~S~sK~~~~ 267 (427)
T 3dyd_A 193 ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS-----TDVPILSCGGLAKRWLV 267 (427)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC-----SSCCEEEEEESTTTSSC
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC-----CCCcEEEEeeccccCCC
Confidence 8999999999999999999999999999999999999999999888776666665542 23568889999999999
Q ss_pred CCceEEEEEeCC------HHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 273 PGFRVGIVYSFN------DTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 273 ~G~RvG~i~~~~------~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
+|+|+||+++++ +.+...+... ...+..+++.|.++..+|++.. ..++++.+++++++++.+.+.|+++ |
T Consensus 268 ~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g 345 (427)
T 3dyd_A 268 PGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALAAIPG 345 (427)
T ss_dssp GGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999875 3455444433 2345588899999999997422 3457778889999999999999998 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+++|+|+|++++...... .....+++..+++++||.+.||+.|+. ++++||+++ .+++++++++++|++++
T Consensus 346 ~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 346 LRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQEFC 421 (427)
T ss_dssp EEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred ceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHHHHHHHHH
Confidence 88888899999999887321111 112336788888788999999998864 789999998 59999999999999999
Q ss_pred hhhh
Q 011801 425 QQDK 428 (477)
Q Consensus 425 ~~~~ 428 (477)
++.+
T Consensus 422 ~~~~ 425 (427)
T 3dyd_A 422 EQHY 425 (427)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8754
No 17
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=6.6e-45 Score=369.73 Aligned_cols=349 Identities=22% Similarity=0.350 Sum_probs=280.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~ 95 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLE------------TDALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVV 95 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999998886 3546665554211 1235788888999999999999998777 457789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+++|.+|+++|+++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v 165 (391)
T 3h14_A 96 ITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGL 165 (391)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECCGGGTTSCCHHHHTTS---------CCSEE
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHhc---------CCeEE
Confidence 9999999999999999999999999999999999888877 9999999998777889999988764 67899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++.. .+... ..+++++++|+||.+|++|+
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~-------~~~~~i~~~s~sK~~g~~G~ 237 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALE-------LTDECYVINSFSKYFSMTGW 237 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGG-------TCSSSEEEEESSSTTCCTTS
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhh-------cCCCEEEEEechhccCCccc
Confidence 99999999999999999999999999999999999999988776643 33332 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHh-cc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKM-SS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~-~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~ 352 (477)
|+||++++++.+. .+.+. .. .+.++.+.|.++.++|.. ..++++.+++++++++.+.+.|++.|+.. ..+.+
T Consensus 238 r~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 312 (391)
T 3h14_A 238 RVGWMVVPEDQVR-VVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDG 312 (391)
T ss_dssp CCEEEECCGGGHH-HHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCB
T ss_pred eeEEEEeCHHHHH-HHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCe
Confidence 9999999766443 33332 22 234778899998888874 34578888899999999999999887654 56788
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+|++++.... +..++++.+++++||.++||+.|+. ..++++|++++. +++++++++++|+++++++.
T Consensus 313 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 313 AFYVYADVSDLTD-----DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp TTEEEEECTTTCS-----CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEecCccCC-----CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhc
Confidence 8999999874211 1235778888878999999999986 457899999997 89999999999999998744
No 18
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-44 Score=365.91 Aligned_cols=345 Identities=16% Similarity=0.201 Sum_probs=281.4
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
++ ++|+|+.++++++ ++.+.+.+.+.. .....|++..|.+++|+++|+++.+.+| +.+++++|
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i 85 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHT-------------HSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENEL 85 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGE
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhh-------------hhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHE
Confidence 34 7899999998885 466777776631 2456899888999999999999987766 34578999
Q ss_pred EEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 115 VMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
++|+|+++++.+++.++.++ ||.|+++.|+|+++...++.. |.+++.++++..+++.+ ++++++.+ ++
T Consensus 86 ~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~l~~~~~~------~~ 155 (376)
T 3ezs_A 86 ISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI-KAKSLLMPLTKENDFTP---SLNEKELQ------EV 155 (376)
T ss_dssp EEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTSCC---CCCHHHHH------HC
T ss_pred EECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHc-CCEEEEcccCCCCCcch---hHHhhhcc------CC
Confidence 99999999999999999999 999999999999999888877 99999999876555554 56666654 67
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc-CCCCcEEEEecCCcccC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~-~~~~~viiv~SlSK~~g 271 (477)
++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+......+.+ ...+++++++||||.+|
T Consensus 156 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 234 (376)
T 3ezs_A 156 DLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSS 234 (376)
T ss_dssp SEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTT
T ss_pred CEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccC
Confidence 8999999999999999999999999999999999999999999877663 345444321000 02478899999999999
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
++|+|+||+++++ .+.+.+..... .+.++++.|.++..+|.+.++ +++.+++++++++.+.+.|+ ++. .
T Consensus 235 ~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~--~~~--~ 305 (376)
T 3ezs_A 235 APGLRSGFIAGDS-RLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRH----AEFFRNIYANNLKLARKIFK--NTL--I 305 (376)
T ss_dssp CGGGCCEEEEECH-HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHH----HHHHHHHHHHHHHHHHHHST--TCC--C
T ss_pred CccceeEEEeeCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHhc--CCC--C
Confidence 9999999999954 45454444322 234788999999999987543 67788899999999999998 665 6
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC--CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ--CTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~--~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+|+|++++. ..++++.+++++||.+.||+.|+ ...++++||+++. +++++++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 306 YPYSFYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CSBSSEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC
T ss_pred CCcceEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 6788999999971 12577777776799999999998 4467899999986 999999999999999865
No 19
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=5e-45 Score=375.29 Aligned_cols=365 Identities=19% Similarity=0.268 Sum_probs=290.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
+.++|+|+.+.+.++ ++.+.+.+.+.-... . .....|++..|..++|+++|+++.+.+| +.++++ +|
T Consensus 36 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~----~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v 104 (429)
T 1yiz_A 36 QYKPLNLGQGFPDYHAPKYALNALAAAANSP-----D----PLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEV 104 (429)
T ss_dssp HHCCEECCSSSCSSCCCHHHHHHHHHHHTCS-----C----GGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSE
T ss_pred cCCEEEecCCCCCCCCCHHHHHHHHHHHhcc-----c----cCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCE
Confidence 346899999987653 455666555421100 0 0245788878899999999999987666 446788 99
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCC--------CcccCHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN--------NFKITREALEAAYERAQ 186 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~--------~f~i~~~~l~~~~~~~~ 186 (477)
++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++..+ +|.+|+++|++++++
T Consensus 105 ~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-- 181 (429)
T 1yiz_A 105 LVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE-- 181 (429)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT--
T ss_pred EEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCcccccccccccCcccCHHHHHHHhcc--
Confidence 99999999999999999999999999999999999888876 9999999987643 678999999988753
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..++++++.|+
T Consensus 182 ----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~s~ 253 (429)
T 1yiz_A 182 ----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG----MWERTITIGSA 253 (429)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT----TGGGEEEEEEH
T ss_pred ----CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC----CcCceEEEecc
Confidence 7899999999999999999999999999999999999999999998887655555544321 24678999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
||.+|++|+|+||++++++ +.+.+.... ..+.++++.|.++..+|++ ..+ ++++++.+++++++++.+.+.
T Consensus 254 sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 331 (429)
T 1yiz_A 254 GKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASF 331 (429)
T ss_dssp HHHHTCGGGCCEEEESCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcceEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999654 444443322 2344788899988888876 322 445788888999999999999
Q ss_pred HhhCCCeEecCCceEEEEeeccchhh------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccC
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLK------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANM 408 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~ 408 (477)
|++.|+.+..+.+|+|+|++++.... ........++++.+++++||.+.||+.|+.. .++++||+++.
T Consensus 332 L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~- 410 (429)
T 1yiz_A 332 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK- 410 (429)
T ss_dssp HHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS-
T ss_pred HHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC-
Confidence 99889998888889999999985310 0000123367777887789999999888642 26899999996
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 411 KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 899999999999998753
No 20
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=5.8e-45 Score=367.77 Aligned_cols=348 Identities=20% Similarity=0.269 Sum_probs=289.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++++++ ++.+.+.+.+.-. .....|++ .| .++|+++|+++++.+| +.+++++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i~ 85 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQ------------REAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWIF 85 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHH------------TTCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHH------------cCCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999998875 4556666554210 12457888 77 9999999999998777 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|++.++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ +|+++|++++++ +++++
T Consensus 86 ~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v 154 (377)
T 3fdb_A 86 PIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT-QREGIFIDATGG----INLHDVEKGFQA------GARSI 154 (377)
T ss_dssp EESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHH-TCCEEEEECTTS----CCHHHHHHHHHT------TCCEE
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEEccCCCC----CCHHHHHHHhcc------CCCEE
Confidence 9999999999999999999999999999999999888877 999999998753 899999999875 68899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ..+.++..+. ..+++++++||||.+|++|
T Consensus 155 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-----~~~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 155 LLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDT-----AASVCITITAPSKAWNIAG 229 (377)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHH-----HHHHEEEEECSTTTTTCGG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHcc-----CCCcEEEEEeChHhccCcc
Confidence 999999999999999999999999999999999999999988876 4445544332 1367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
+|+||+++.++.+.+.+..... .+.++++.|.++..+|.+. ++++++.+++++++++.+.+.|++. |+++..+
T Consensus 230 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 9999999877777666655432 2457889999988888753 3557888899999999999999985 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+++++|++++...... +++..+++++||.++||+.|+...++++|++++. +++++++++++|++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~------~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 307 QATYLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp SBCSEEEEECTTSCCCS------CHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEECcccCCCH------HHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 99999999998531111 3677788878999999999987678899999996 899999999999999865
No 21
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.8e-44 Score=367.24 Aligned_cols=347 Identities=21% Similarity=0.402 Sum_probs=278.3
Q ss_pred Cccccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.+ +++.+.+.+.+.-.. + .......|++..|.+++|+++++++++.+| +.+++++|+
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~ 103 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTD------Y--DSVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLY 103 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHH------S--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhc------C--CccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEE
Confidence 35689999886554 345566655542100 0 001145798888999999999999998877 456889999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|+.+++.+++++| |.|++++|+|+++...++.. |.+++.++++. ++|.+|+++|++++++ ++++
T Consensus 104 ~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~ 175 (398)
T 3ele_A 104 MTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA-GARLVEVPADT-EHFQIDFDALEERINA------HTRG 175 (398)
T ss_dssp EESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCT-TTSSCCHHHHHHTCCT------TEEE
T ss_pred EccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhCc------CCCE
Confidence 99999999999999999999 99999999999999888877 99999999875 4789999999998853 7999
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHh------cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFIND------KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~------~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
|++++|+||||.+++.+++++|+++|++ +|++||+||+|+++.+++........ ..+++++++|+||
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~sK 248 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK-------YYDNTLVCYSYSK 248 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG-------TCSSEEEEEESTT
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh-------hcCCeEEEEehhh
Confidence 9999999999999999999999999999 99999999999998776644333222 3478899999999
Q ss_pred ccCCCCceEEEEEeCCHH-----HHHHHHH---hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDT-----VVNCGRK---MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL 340 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~-----i~~~~~~---~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L 340 (477)
.+|++|+|+||++++++. +...... .......+.+.|.++..++.+.+. +++++++++.+.+.|
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGD--------INAYKENRDLLYEGL 320 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCC--------HHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHH--------HHHHHHHHHHHHHHH
Confidence 999999999999997763 2222222 122344677899998888877542 356677888888999
Q ss_pred hhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 341 EQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 341 ~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
++.|+++..+.+|+|+|++++.. + ..++++. +.++||.++||+.|+. ++++||+++ .+++++++++++|
T Consensus 321 ~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~-l~~~gi~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l 389 (398)
T 3ele_A 321 TRIGYHCFKPDGAFYMFVKALED-D------SNAFCEK-AKEEDVLIVAADGFGC--PGWVRISYC-VDREMIKHSMPAF 389 (398)
T ss_dssp HHHTCCEECCSBSSEEEEECSSS-C------HHHHHHH-HHTTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHH
T ss_pred HHcCCeecCCCeeEEEEEEcCCC-C------HHHHHHH-HHHCCEEEeCccccCC--CCeEEEEec-CCHHHHHHHHHHH
Confidence 88899999999999999998742 1 2245554 4577999999998864 689999998 5999999999999
Q ss_pred HHHHhhh
Q 011801 421 AAFVQQD 427 (477)
Q Consensus 421 ~~~~~~~ 427 (477)
++++++.
T Consensus 390 ~~~l~~~ 396 (398)
T 3ele_A 390 EKIYKKY 396 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999764
No 22
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=8.4e-45 Score=368.34 Aligned_cols=349 Identities=19% Similarity=0.287 Sum_probs=282.3
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+.+.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++.+.+| +.++++ +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 96 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 96 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 5799999887653 4556666554210 0135788878899999999999987666 446788 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+ +|.+|+++|++++++ ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~ 168 (386)
T 1u08_A 97 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQPP-HFRVDWQEFAALLSE------RTRLVI 168 (386)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCTT-TCCCCHHHHHHHCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeecCcc-cCcCCHHHHHHhhcc------cCEEEE
Confidence 999999999999999999999999999999999888876 999999998653 578999999988743 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++|+||||.+++.+++++|+++|+++|+++|+||+|+++.|++..+.++..+.. ..+++++++|+||.+|++|+|
T Consensus 169 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r 244 (386)
T 1u08_A 169 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ----LRERAVAVSSFGKTYHMTGWK 244 (386)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH----HHTTEEEEEEHHHHTTCGGGC
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC----ccCcEEEEecchhhcCCcccc
Confidence 9999999999999999999999999999999999999988887655455544321 136789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+||++++++ +.+.++... ..+.++++.|.++..+|++. +.++++.+++++++++.+.+.|++.|+++..+.+|+
T Consensus 245 ~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 320 (386)
T 1u08_A 245 VGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY 320 (386)
T ss_dssp CEEEECCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred eEEEEcCHH-HHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceE
Confidence 999999654 444444332 23447788898888888753 345778888999999999999999999988888899
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
|+|++++.... .+..++++.+++++||.+.||+.|.. ..++++||+++. +++++++++++|++
T Consensus 321 ~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 99999975300 11235777788778999999998864 356899999986 89999999999864
No 23
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=7e-45 Score=367.59 Aligned_cols=347 Identities=17% Similarity=0.250 Sum_probs=280.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.++++ +|+
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v~ 91 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALND-----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREAL 91 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTC-----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSEE
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 46899999998764 45666666553210 1245687766889999999999977666 445676 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.+++ .++|.+|+++|++++++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~v 162 (376)
T 2dou_A 92 ALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA-SLRTFLIPL--REDGLADLKAVPEGVWR------EAKVL 162 (376)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT-TCEEEEECB--CTTSSBCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc-CCEEEEeeC--CCCCCCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999888876 999999998 45788999999998864 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+...... ..+++++++||||.+|++|+
T Consensus 163 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPG----AKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTT----GGGTEEEEEEHHHHHTCGGG
T ss_pred EECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCC----CCCcEEEEecchhhcCChhh
Confidence 9999999999999999999999999999999999999998777652 234333322 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+..... ...++.+.|.++..+|++. ++++++.+++++++++.+.+.|++. +.+..+.+|
T Consensus 238 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 312 (376)
T 2dou_A 238 RLGFALGSEE-ALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSLLPPRAT 312 (376)
T ss_dssp CCEEEEECHH-HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBS
T ss_pred eeEEEecCHH-HHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCee
Confidence 9999998554 4444433322 2246889999999999873 4567888889999999999999988 888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|+|++++...+ ..++++.++++ ||.+.||+.|+...++++||+++. +++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPEGVD------DLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCTTCC------HHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCC------HHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 999999984221 12577777776 999999998875557899999986 8999999999998764
No 24
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-44 Score=369.51 Aligned_cols=363 Identities=20% Similarity=0.347 Sum_probs=285.4
Q ss_pred CCCccccccccccc----cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhc------cc
Q 011801 35 QNPGGVIQLGLAEN----QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGK------GR 103 (477)
Q Consensus 35 ~~~~~~i~l~~~~n----~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~------~~ 103 (477)
.++.++|+|+.+.. .+ +++.+.+.+.+.... .....|++..|..++|+++|+++++ .+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~ 98 (416)
T 1bw0_A 30 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS-----------QECNGYFPTVGSPEAREAVATWWRNSFVHKEEL 98 (416)
T ss_dssp CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT-----------TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTT
T ss_pred hcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC-----------CccCCcCCCCCCHHHHHHHHHHHHhhhcccccC
Confidence 44567899998863 23 445566665542100 1234688878999999999999983 13
Q ss_pred CCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 104 GGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 104 g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
| +.+++++|++|+|+++|+++++.+++++||.|+++.|+|+++...++.. |++++.++++.+++|.+|+++|+++++
T Consensus 99 ~--~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~ 175 (416)
T 1bw0_A 99 K--STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRLKD 175 (416)
T ss_dssp G--GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred C--CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHc-CcEEEEeecCcccCCCCCHHHHHHHhc
Confidence 3 4567899999999999999999999999999999999999999888876 999999998765568899999998875
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC----CcccHHHhhhhccCCCCc
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP----KFTSVAEVIQEMDCNRDL 259 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~----~~~s~~~~~~~~~~~~~~ 259 (477)
+ ++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.|++. .+.++..+. ..++
T Consensus 176 ~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~-----~~~~ 244 (416)
T 1bw0_A 176 D------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE-----TTVP 244 (416)
T ss_dssp T------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC-----CSCC
T ss_pred c------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc-----CCCc
Confidence 3 688999999999999999999999999999999999999999999877665 444544331 2346
Q ss_pred EEEEecCCcccCCCCceEEEEEeCCH-----HHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 260 IHIIYSLSKDMGLPGFRVGIVYSFND-----TVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 260 viiv~SlSK~~g~~G~RvG~i~~~~~-----~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
+++++||||.++++|+|+||++++++ .+....+... ..+.++++.|.++..+|+... +.++++.++++++++
T Consensus 245 ~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~ 322 (416)
T 1bw0_A 245 RVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESA 322 (416)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 88999999999999999999998764 2332222221 234578899999999987532 345777888899999
Q ss_pred HHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHH
Q 011801 334 HNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDT 412 (477)
Q Consensus 334 ~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~ 412 (477)
+.+.+.|+++ |+.+..+.+|+|+|++++...-. ......+++..+++++||.++||+.|+. ++++||+++ .++++
T Consensus 323 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e~ 398 (416)
T 1bw0_A 323 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEV 398 (416)
T ss_dssp HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHH
T ss_pred HHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcC-CCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHHH
Confidence 9999999987 88877778889999988642100 0012235777787778999999998864 679999997 58999
Q ss_pred HHHHHHHHHHHHhhhh
Q 011801 413 LQVALNRIAAFVQQDK 428 (477)
Q Consensus 413 l~~~l~~l~~~~~~~~ 428 (477)
+++++++|++++++.+
T Consensus 399 l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 399 YREAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999997643
No 25
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=2e-44 Score=365.42 Aligned_cols=356 Identities=17% Similarity=0.231 Sum_probs=292.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
+++|+|+.+.+.++ ++.+.+.+.+.-. +....|++. ..++++++++++.+.+| +.+++++|++
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i~~ 90 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLK------------VAAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWCVF 90 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHT------------TCCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGEEE
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHh------------cCcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 47899999987774 4666666655311 123457655 58999999999998777 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++ ..++|.+|+++|++++++ .++++|
T Consensus 91 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v 164 (391)
T 3dzz_A 91 ASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN-GRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMM 164 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHc-CCEEEEeeeeecCCceeecHHHHHHHHhc-----cCceEE
Confidence 999999999999999999999999999999999888877 9999999986 456788999999999863 289999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+.+..+.++..+..+ ..++++++.|+||.+|++|+
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~d~~i~~~s~sK~~g~~G~ 241 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD---AKNWVVSLISPSKTFNLAAL 241 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTT---TGGGEEEEECSHHHHTCTTT
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcc---ccCcEEEEEeChhhccccch
Confidence 999999999999999999999999999999999999999888777666666554210 14789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 276 RVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
|+||++++++.+.+.+... ...+..+++.|.++...|.+. +.++++.+++++++++.+.+.|++. |+++..+
T Consensus 242 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 318 (391)
T 3dzz_A 242 HAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDS 318 (391)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred hheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecc
Confidence 9999999766666655443 233457888888888777653 4457888889999999999999984 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++++|++++.... ...++++.+++++||.++||+.|+..+++++||+++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 319 NASYLAWVDISALGM-----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CBSSEEEEECGGGCS-----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEehhhcCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 999999999985210 1235777777677999999999987777999999994 8999999999999999764
No 26
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=2e-44 Score=364.40 Aligned_cols=352 Identities=16% Similarity=0.238 Sum_probs=289.7
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+... .....|++. ..++++++++++.+.+| +.+++++|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~~~~l~~~l~~~~g--~~~~~~~v~~ 87 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIE------------HPIFGYTLP--PENIGDIICNWTKKQYN--WDIQKEWIVF 87 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHH------------SCCCCCCCC--CTTHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--CHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 47899999998885 4566666655211 123456655 58999999999988776 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+++++.+++++||.|+++.|+|+++...++.. |.+++.++++.. ++|.+|+++|++++.. ++++|
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v 160 (383)
T 3kax_A 88 SAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTN-NRQLCVSPLQKQNDTYAIDFEHLEKQFQQ------GVKLM 160 (383)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTT------TCCEE
T ss_pred cCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHc-CCEEEeccceecCCcEEEcHHHHHHHhCc------CCeEE
Confidence 999999999999999999999999999999999888877 999999998643 3588999999999832 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+ ..+++++++||||.+|++|+
T Consensus 161 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~ 237 (383)
T 3kax_A 161 LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEE---LAARTITCMAPSKTFNIAGL 237 (383)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHTTEEEEECSHHHHTCGGG
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCcc---ccCcEEEEEEChhhccCcch
Confidence 999999999999999999999999999999999999999888877655665554321 13788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc---ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 276 RVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~---~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
|+||++++++.+.+.+.... .++..+.+.|.++..++.+. ++++++.+++++++++.+.+.|++. |+++..+
T Consensus 238 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 314 (383)
T 3kax_A 238 QASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC---NDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKP 314 (383)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC
T ss_pred hheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 99999997666666554432 23357889999998888873 4457888889999999999999984 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.+++++|++++... . ...++++.+++++||.++||+.|+..+++++|++++. +++++++++++|++++
T Consensus 315 ~~~~~~~~~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 315 EGSFLLWIDCSALN----L-SQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLRHTF 382 (383)
T ss_dssp SBSSEEEEECGGGC----C-CHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEccccC----C-CHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 99999999998521 0 1235777777778999999999987778999999995 8999999999999876
No 27
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.9e-44 Score=365.17 Aligned_cols=346 Identities=25% Similarity=0.434 Sum_probs=281.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~ 105 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 105 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 346899999988764 3555555544211 0124688878899999999999987666 445789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++++|
T Consensus 106 ~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 178 (389)
T 1o4s_A 106 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAV 178 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEE
T ss_pred EecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888876 9999999987545788999999988753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ .+.++..+.. ..+++++++||||.+|++|+
T Consensus 179 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 253 (389)
T 1o4s_A 179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE----GFDRIVYINGFSKSHSMTGW 253 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS----SSTTEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC----CCCcEEEEeechhhcCCccc
Confidence 999999999999999999999999999999999999999877765 3345555421 24788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+..... .+.++++.|.++..+|.+. +++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 254 r~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 326 (389)
T 1o4s_A 254 RVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEGA 326 (389)
T ss_dssp CCEEEECCHH-HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBS
T ss_pred ceEEEEeCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcc
Confidence 9999999654 4444443322 2447888999998999875 35667788889999999999889888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++ .+ ..++++.+++++||.+.||+.|+. ++++||+++. +++++++++++|++++++
T Consensus 327 ~~~~~~~~--~~------~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 327 FYLFFKVR--GD------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLNS 388 (389)
T ss_dssp SEEEEECS--SC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHTC
T ss_pred eEEEEeCC--CC------HHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 99999987 11 225777777677999999998864 5799999996 999999999999998864
No 28
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=3.4e-44 Score=369.09 Aligned_cols=328 Identities=17% Similarity=0.258 Sum_probs=266.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccC-------CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD-------PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD 151 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-------~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~ 151 (477)
...|++..|++++|++|++++.+.+| +..+ +++|++|+|+++|+.+++.++++|||.|++++|+|+++...
T Consensus 71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 ALQYSPSAGIPELLSWLKQLQIKLHN--PPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHC--CTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcC--CCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 45799999999999999999988777 3332 37999999999999999999999999999999999999998
Q ss_pred HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH------HhCCCeeEEEE-eCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 152 LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ------EASINIKGLII-TNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~------~~~~~~k~vii-~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
++.. |.++++++++.. .+|+++|++++++.. ..+.++++|++ ++||||||.+++.+++++|+++|+++|
T Consensus 149 ~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 149 LHPL-GCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp HGGG-TCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHc-CCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 8877 999999998642 489999999886311 01136788866 689999999999999999999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCch
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSS 302 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~ 302 (477)
++||+||+|+++.|++..+.++..+. ..+++++++||||.+| ||+|+||++++++ +.+.+.... ..+.++.
T Consensus 225 ~~li~De~~~~~~~~g~~~~~~~~~~-----~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 225 FLIIEDDPYYFLQFNKFRVPTFLSMD-----VDGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTLHPST 297 (425)
T ss_dssp CEEEEECTTGGGBSSSSCCCCTGGGC-----TTSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTCSSCH
T ss_pred CEEEEECCcccccCCCCCCCCccccC-----CCCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcCCCCH
Confidence 99999999999888766556655542 3468999999999999 9999999999665 444443332 2345788
Q ss_pred HHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CC-eEecCCceEEEEeeccchhhccCchHHHHHH
Q 011801 303 QTQYLLASMLSD---DEFVDNFLVETSKRLAKRHHNFTKGLEQV--GI-NCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 303 ~~q~~~~~~L~~---~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi-~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
++|.++..+|++ +.+ .+++++.+++++++++.+.+.|++. |+ .+..+.+|+|+|++++...+. .+++
T Consensus 298 ~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~------~~~~ 370 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDV------KELI 370 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCC------HHHH
T ss_pred HHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCH------HHHH
Confidence 999999999976 334 6778888999999999999999884 76 466788999999999853221 1333
Q ss_pred HHHHHhcCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
...+.++||.+.||+.|+.. ..+++||+++..+++++++++++|++++++
T Consensus 371 ~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 371 EEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 44455779999999999753 357999999856999999999999999865
No 29
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=1.2e-44 Score=374.67 Aligned_cols=354 Identities=17% Similarity=0.218 Sum_probs=284.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.... .........|++..|.++||+++|+++. +| +.+++++|+
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~ 136 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAG-------LATREGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIF 136 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHG-------GGGSCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHh-------hccccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEE
Confidence 346899999988774 45555555442110 0000123578888899999999999997 44 457789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE----------EEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ----------IVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~----------~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++++.++ .+++++||.|++++|+|+++...++.. |.+ ++.++++..+++..+++++
T Consensus 137 ~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMM-GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp EESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHH-TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred EccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHc-CCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 999999999999 888899999999999999999888877 988 9999988766777765432
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
.++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++....++..+.. ..+++++++|
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s 279 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG----ADEVAIETCS 279 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT----GGGTEEEEEE
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC----CCCcEEEEec
Confidence 37899999999999999999999999999999999999999999998777654455554422 2467899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHH-------HHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVV-------NCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNF 336 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~-------~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l 336 (477)
|||.+|++|+|+||++++++.+. ....+. ..+..+++++|.++..+|.+.. ..++++.+++++++++.+
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 357 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQIL 357 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999776542 122222 2344578899999999998743 356788899999999999
Q ss_pred HHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHH
Q 011801 337 TKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416 (477)
Q Consensus 337 ~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~ 416 (477)
.+.|++.|+++..+.+|+|+|++++ ..+ ..++++.+++++||.+.||+.|+..+++++||+++. ++++++++
T Consensus 358 ~~~L~~~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~ 429 (449)
T 3qgu_A 358 KTTFTEMGFSVYGGDDAPYIWVGFP-GKP------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA 429 (449)
T ss_dssp HHHHHHTTCCEEESSSSSEEEEECT-TSC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHCCCeeeCCCCeeEEEEECC-CCC------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence 9999999999998888999999998 221 235778888888999999999987778999999875 99999999
Q ss_pred HHHHHHHHhhhh
Q 011801 417 LNRIAAFVQQDK 428 (477)
Q Consensus 417 l~~l~~~~~~~~ 428 (477)
+++|++++++.+
T Consensus 430 l~~l~~~~~~~~ 441 (449)
T 3qgu_A 430 VRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHhcC
Confidence 999999997644
No 30
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.5e-44 Score=367.85 Aligned_cols=358 Identities=17% Similarity=0.207 Sum_probs=287.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
|.++|+|+.+++.++ ++.+.+.+.+.-. .....|++. ..++|+++|+++.+.+| +.+++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~ 93 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 457899999988764 4566666655210 123467664 79999999999987666 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++ .+++|.+|+++|++++++ .++++
T Consensus 94 ~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~ 167 (399)
T 1c7n_A 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (399)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcE
Confidence 9999999999999999999999999999999999888876 9999999886 334688999999998862 27899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++|
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G 244 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ---LADKTITFTAPSKTFNIAG 244 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHTTEEEEECSHHHHTCGG
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcc---ccCcEEEEEeChhhccccc
Confidence 9999999999999999999999999999999999999999887766555555443210 0367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-c--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-S--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~ 349 (477)
+|+||++++++.+.+.+.... . ++.++.++|.++.++|.+. ++++++.+++++++++.+.+.|++ + |+.+..
T Consensus 245 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 321 (399)
T 1c7n_A 245 MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL 321 (399)
T ss_dssp GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec
Confidence 999999997665555554432 2 2357888999888888643 345778888999999999999988 5 888888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+++++|++++... . ...++++.+++++||.+.||+.|+...++++||+++. +++++++++++|++++++.+
T Consensus 322 ~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 322 IEGTYLQWIDFRALK----M-DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLK 394 (399)
T ss_dssp CSBSSEEEEECGGGC----C-CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEcccCC----C-CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHHH
Confidence 889999999997420 0 1225777777678999999998876567899999986 58999999999999997643
No 31
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=2.1e-44 Score=365.50 Aligned_cols=354 Identities=18% Similarity=0.372 Sum_probs=284.7
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+... .....|++..|..++|+++++++++.+| +.+++++|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 94 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNIL 94 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 456899999988764 4555555544210 1134688888999999999999987766 445788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|++++|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++++|
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 167 (388)
T 1j32_A 95 VTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLL 167 (388)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888876 9999999987555788999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++|+
T Consensus 168 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE---AYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHHTEEEEEESTTTTTCTTT
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccc---ccCCEEEEeechhccCCccc
Confidence 999999999999999999999999999999999999999987776554555443210 02578999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~ 352 (477)
|+||++++++ +.+.+..... ...++++.|.++..+|... ++++++.+++++++++.+.+.|++. |+++..+.+
T Consensus 245 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 320 (388)
T 1j32_A 245 RVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred ceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCe
Confidence 9999999655 4444443322 2346788998888888643 2356778888999999999999988 888888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|+|++++.. .. ...++++.+++++||.+.||+.|+. ++++|++++. +++++++++++|++++++
T Consensus 321 ~~~~~~~~~~~----~~-~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~-~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 321 AFYMFPSIAKT----GR-SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp TTEECCBCGGG----TC-CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCC----CC-CHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 99999988742 01 1235777777767999999988864 6799999984 899999999999999865
No 32
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=6.9e-44 Score=358.69 Aligned_cols=332 Identities=18% Similarity=0.227 Sum_probs=275.8
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+. ......|++..+ .++|+++|++++ +++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~ 87 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQN-------------ANKAHLYPDDSM-IELKSTLAQKYK--------VQNENIII 87 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHH-------------GGGTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCCCh-HHHHHHHHHHhC--------CCcceEEE
Confidence 56899999999985 45666666553 123567888776 999999999996 56889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|+++.|+|+.+...++.. |.+++.+++ ..+++ +|+++|++++++ ++++|+
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~-~~~~~-~d~~~l~~~l~~------~~~~v~ 158 (365)
T 3get_A 88 GAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC-GAKCYKTQS-ITHNL-DEFKKLYETHKD------EIKLIF 158 (365)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHH-TCEEEECSS-SSCCH-HHHHHHHHHTTT------TEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEec-CCCCC-CCHHHHHHHhCC------CCCEEE
Confidence 999999999999999999999999999999999888887 999999998 23567 999999998863 899999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++|+||||.+++.+++++|+++| ++|+++|+||+|+++.| .+..+.+...... ..+++++++|+||.+|++|
T Consensus 159 ~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 159 LCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIK----EFDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH----HCTTEEEEEESSSTTSCTT
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhc----cCCCEEEEeecchHhcCcc
Confidence 999999999999999999999998 57999999999998765 4433345444443 3578899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+++.++.+ .
T Consensus 234 ~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~ 307 (365)
T 3get_A 234 LRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDDE----FTEKTLENNFSQMELYKEFAKKHNIKIIDSYT-N 307 (365)
T ss_dssp TCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCSS-S
T ss_pred hheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCCCC-e
Confidence 99999999 555666665555555689999999999999753 47788889999999999999999998876655 6
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|++++.. + ..++.+.+.+ +||.++||+.|+ ++++|++++ +++++++++++|++++
T Consensus 308 ~~~~~~~~~-~------~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 308 FITYFFDEK-N------STDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEEECSSS-C------HHHHHHHHHT-TTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC-C------HHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 799999853 1 2256666654 599999999887 789999998 7999999999999876
No 33
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=9.3e-44 Score=365.73 Aligned_cols=360 Identities=18% Similarity=0.262 Sum_probs=284.9
Q ss_pred cccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCCc
Q 011801 38 GGVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPDR 113 (477)
Q Consensus 38 ~~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~~ 113 (477)
.++|+|+.+.+. .+.+.+.+++.+.... . ......|++..|.+++|+++|+++.+.+| +. +++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 111 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEK------E---YHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDEDN 111 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHH------S---HHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGGG
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhh------c---chhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCccc
Confidence 368999876532 2456666665542100 0 01235788888999999999999966545 34 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh--CCC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA--SIN 191 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~--~~~ 191 (477)
|++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++.... +.+
T Consensus 112 v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~ 187 (425)
T 1vp4_A 112 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 187 (425)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred EEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999999999999888876 999999998753 38999999998753211 236
Q ss_pred eeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 192 IKGL-IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 192 ~k~v-ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+++| ++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+. ..+++++++||||.+
T Consensus 188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-----~~~~~i~~~s~sK~~ 262 (425)
T 1vp4_A 188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-----GPERVVLLNTFSKVL 262 (425)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-----CTTTEEEEEESTTTT
T ss_pred ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC-----CCCCEEEEecccccc
Confidence 8888 5799999999999999999999999999999999999998877665556666542 346789999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----- 343 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----- 343 (477)
| +|+|+||+++++ .+.+.+.... . .+..++++|.++..+|++..+ ++++++.+++++++++.+.+.|++.
T Consensus 263 ~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 263 A-PGLRIGMVAGSK-EFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp C-GGGCEEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred c-cccceEEEeeCH-HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9 999999999964 4444443322 1 234688999999999986543 5678888899999999999999875
Q ss_pred CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 344 GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
|+.+..+.+|+|+|++++...+.. ++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|+
T Consensus 340 g~~~~~~~~g~~~~~~~~~~~~~~------~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~ 412 (425)
T 1vp4_A 340 GVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLR 412 (425)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTT------TTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHH
T ss_pred ceEEecCCccEEEEEEcCCCCCHH------HHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 688877888999999998532221 366777766 9999999988653 4689999998768999999999999
Q ss_pred HHHhhh
Q 011801 422 AFVQQD 427 (477)
Q Consensus 422 ~~~~~~ 427 (477)
+++++.
T Consensus 413 ~~l~~~ 418 (425)
T 1vp4_A 413 EVVLEY 418 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 34
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4e-44 Score=363.87 Aligned_cols=352 Identities=14% Similarity=0.245 Sum_probs=282.2
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHH-HHHHHHHHHhcccCCCCccCCCcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPE-FRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+.++|+|+.+.+.++ ++.+.+++.+.-. .....|++. ..+ +|+++|+++++.+| +.+++++|
T Consensus 27 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v 90 (390)
T 1d2f_A 27 TADLLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTV 90 (390)
T ss_dssp ---CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGE
T ss_pred CCCeeEeeecCCCCCCCHHHHHHHHHHHh------------CCCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHE
Confidence 357899999988764 4566666655311 123467664 678 99999999987766 44678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCee
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ ++|.+|+++|++++++ .+++
T Consensus 91 ~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~ 164 (390)
T 1d2f_A 91 VYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECK 164 (390)
T ss_dssp EEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEE
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC-CCEEEEeecccCCCccccCHHHHHHHhcc-----CCCe
Confidence 99999999999999999999999999999999999888876 999999998754 3688999999998853 2789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. .. ... ++||||.+|++
T Consensus 165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~-~d~-~~s~sK~~~~~ 238 (390)
T 1d2f_A 165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR----GD-WAL-LTSGSKSFNIP 238 (390)
T ss_dssp EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC----SS-EEE-EECSHHHHTCG
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch----hh-Hhh-ccCccHhhccc
Confidence 9999999999999999999999999999999999999999988777655566554421 11 023 89999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhc----ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeE
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS----SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINC 347 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~----~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~ 347 (477)
|+|+||++++++.+.+.+.... .++.++.+.|.++.++|.+. ++++++.+++++++++.+.+.|++ + |+.+
T Consensus 239 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (390)
T 1d2f_A 239 ALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFPELNW 315 (390)
T ss_dssp GGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred ChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 9999999997666655554332 34467888888888877642 345778888999999999999988 5 8888
Q ss_pred ecCCceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 348 LKSNAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 348 ~~~~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.+|+++|++++.. .+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNID------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CCCSBCSEEEEECGGGCCC------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEEccccCCC------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 8888899999999753 11 225777777678999999999875557899999996 789999999999999875
No 35
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-44 Score=369.85 Aligned_cols=356 Identities=21% Similarity=0.304 Sum_probs=284.3
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++.+.+| +.++++ +|++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~ 91 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIA------------GGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLV 91 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEEE
Confidence 5799999887753 4556666555210 0145788888899999999999987766 446787 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ ++|.+|+++|++++++ ++++|
T Consensus 92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (411)
T 2o0r_A 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMA-GAHRVTVPLVPDGRGFALDADALRRAVTP------RTRAL 164 (411)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEE
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEeeccccccCCCCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999998888776 999999998653 3578999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|+
T Consensus 165 ~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 240 (411)
T 2o0r_A 165 IINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG----MAERTITISSAAKMFNCTGW 240 (411)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEEHHHHTTCTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC----CCCCEEEEeechhhcCCccc
Confidence 99999999999999999999999999999999999999988777655455544321 24678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||+++++ .+.+.+.... ..+..+++.|.++..+|+.. ++++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 241 r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 316 (411)
T 2o0r_A 241 KIGWACGPA-ELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGT 316 (411)
T ss_dssp CEEEEECCH-HHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBS
T ss_pred eEEEEeeCH-HHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCee
Confidence 999999964 4444443322 12346778888888888643 45577888899999999999999889998888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----------EPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----------~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|+|++++... . . +..++...+++++||.+.||+.|... .++++||+++. +++++++++++|++
T Consensus 317 ~~~~~~~~~~~-~--~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 317 YFLCADPRPLG-Y--D-DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLSV 391 (411)
T ss_dssp SEEEEECGGGT-C--C-CHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHGG
T ss_pred EEEEEecCCCC-C--C-CHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 99999997521 0 1 12357777887779999999988432 36799999986 89999999999999
Q ss_pred HHhhhh
Q 011801 423 FVQQDK 428 (477)
Q Consensus 423 ~~~~~~ 428 (477)
++++.+
T Consensus 392 ~~~~~~ 397 (411)
T 2o0r_A 392 LAERPA 397 (411)
T ss_dssp GGC---
T ss_pred HHhccC
Confidence 876543
No 36
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=6e-44 Score=367.48 Aligned_cols=353 Identities=15% Similarity=0.162 Sum_probs=283.5
Q ss_pred ccccccccccc-cccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc--
Q 011801 38 GGVIQLGLAEN-QLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-- 113 (477)
Q Consensus 38 ~~~i~l~~~~n-~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-- 113 (477)
.++|+|+.+++ .++. +.+ .+++...+. +.. .....|++..|.+++|+++|+++.+.. +.+++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~-~~~~a~~~~-------~~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~~~ 114 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFA-SSLDAMFND-------LTP-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDNMS 114 (430)
T ss_dssp TCSEECCCSSCEETTEECCC-HHHHTTBSS-------CCG-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGGBC
T ss_pred CCcEEeeeeeccCCCCchhh-HHHHHHHHh-------cCc-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCccc
Confidence 46899999988 5542 323 223332111 000 135679888899999999999997652 3467889
Q ss_pred -EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh-hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 114 -IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW-RTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 114 -i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~-~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
|++|+|+++|+++++.+++++||.|++++|+|+++...++. . |.+++.++++..+ |.+|+++|++++++. +.+
T Consensus 115 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~ 189 (430)
T 2x5f_A 115 RPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKD-GHYTTDSLVEALQSY---NKD 189 (430)
T ss_dssp CCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTT-CCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSS
T ss_pred eEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhc-CCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCC
Confidence 99999999999999999999999999999999999988887 6 9999999987543 789999999998742 336
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-----cCeEEEecccccccccCCCCcccHH-HhhhhccCCCCc---EEE
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFIND-----KNIHLVCDEIYAATVFSSPKFTSVA-EVIQEMDCNRDL---IHI 262 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-----~~~~lI~De~y~~~~~~~~~~~s~~-~~~~~~~~~~~~---vii 262 (477)
+++|++++|+||||.+++.+++++|+++|++ +|+++|+||+|+++.+++..+.++. .+.. ..++ +++
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~ 265 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTN----LHSNAILPIR 265 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHT----TCCTTEEEEE
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhh----ccCCcceEEE
Confidence 8899999999999999999999999999999 9999999999998877765555655 4422 2467 899
Q ss_pred EecCCcccCCCCceEEEEEe---CCHHHHHHHHHhc------ccCCCchHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVYS---FNDTVVNCGRKMS------SFGLVSSQTQYLLASMLS-DDEFVDNFLVETSKRLAKR 332 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~~---~~~~i~~~~~~~~------~~~~vs~~~q~~~~~~L~-~~~~~~~~~~~~~~~l~~r 332 (477)
++||||.+|++|+|+||+++ +++ +.+.+.... ..+.++.+.|.++..+|+ +.++ .+.+++.+++++++
T Consensus 266 ~~s~sK~~~~~G~riG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 266 LDGATKEFFAWGFRVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKER 343 (430)
T ss_dssp EEEHHHHTTCGGGCCEEEEEBCCCHH-HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHH
T ss_pred EEecccCCCCCCCCeEEEEEecCCHH-HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999 544 444443322 234588899999999998 8766 44566688999999
Q ss_pred HHHHHHHHh----hCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC
Q 011801 333 HHNFTKGLE----QVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM 408 (477)
Q Consensus 333 ~~~l~~~L~----~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~ 408 (477)
++.+.+.|+ +.|+++..+.+|+|+|++++ ..+ ..++++.+++++||.+.|| .++++||+++..
T Consensus 344 ~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~------~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~ 410 (430)
T 2x5f_A 344 YEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVD------PEALRKHLIDKYSIGVIAL------NATDIRIAFSCV 410 (430)
T ss_dssp HHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSC------HHHHHHHHHHHHCEECEEC------SSSEEEEEGGGS
T ss_pred HHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCC------HHHHHHHHHHhCCEEEecC------CCCeEEEEEecC
Confidence 999999998 66888888889999999997 211 2357777777579999998 367999999955
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999999875
No 37
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=2.9e-43 Score=360.89 Aligned_cols=351 Identities=16% Similarity=0.196 Sum_probs=274.7
Q ss_pred ccccccccccc-----cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN-----QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n-----~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.++. +. +++.+.+.+.+... .....|++..|.++||+++++++....+.. .+
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~---~~ 102 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD------------SEHVGYAPIAGIPDFLCAAEKECFGNFRPE---GH 102 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH------------HHHHSCCCTTCCHHHHHHHHHHHHGGGCCS---SE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcc------------cccCCCCCCCChHHHHHHHHHHHhcccCcc---cc
Confidence 36899999852 33 45667777665311 124579888899999999999997654310 12
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++|+..++.++++|||.|++++|+|+.+...++.. |.+++.++++.+ +|.+|+++|++++++.... +
T Consensus 103 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~--~ 178 (418)
T 3rq1_A 103 IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT-GRTLVTYSLFDE-HNNFNHEAFQNRVNELAAK--Q 178 (418)
T ss_dssp EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECSBCT-TSSBCHHHHHHHHHHHHHH--C
T ss_pred ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc-CCEEEEEeeeCC-CCCcCHHHHHHHHHHhhcc--C
Confidence 39999999999999999999999999999999999999888877 999999998654 3889999999999753221 3
Q ss_pred ee-EEEEeCC-CCCcccCCCHHHHHHHHHHHH------hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc--EE
Q 011801 192 IK-GLIITNP-SNPLGTTLDRDTLKSLVSFIN------DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL--IH 261 (477)
Q Consensus 192 ~k-~vii~nP-~NPtG~~~~~~~l~~l~~~~~------~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~--vi 261 (477)
++ ++++++| |||||.+++.+++++|+++|+ ++|++||+||+|.++.+++....++.....+ ..++ ++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~---~~~~~~~i 255 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSH---LPKEILTC 255 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTT---CCTTEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHh---cCCCceEE
Confidence 44 7889999 999999999999999999999 8999999999999876654322233222221 2234 58
Q ss_pred EEecCCcccCCCCceEEEEEe--CCHHHHHHHHHhc------ccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYS--FNDTVVNCGRKMS------SFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLA 330 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~--~~~~i~~~~~~~~------~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~ 330 (477)
+++||||.+|++|+|+||+++ .++.+.+.+.+.. .+..++.++|.++..+|.+.++. .+.+++.+++++
T Consensus 256 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (418)
T 3rq1_A 256 VCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIR 335 (418)
T ss_dssp EEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998 2444544443321 23457889999999999987532 333456678899
Q ss_pred HHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 331 KRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
++++.+.+.|+++|+++.++++|+|+|++++. ..++++. +.++||.+.|| ++++||+++..++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~ 398 (418)
T 3rq1_A 336 DRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPK 398 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCH
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCH
Confidence 99999999999989999999999999998752 1246554 56779999997 4689999986799
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011801 411 DTLQVALNRIAAFVQQD 427 (477)
Q Consensus 411 e~l~~~l~~l~~~~~~~ 427 (477)
+++++++++|++++++.
T Consensus 399 ~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 399 CQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999764
No 38
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=5.1e-44 Score=364.62 Aligned_cols=357 Identities=17% Similarity=0.296 Sum_probs=286.6
Q ss_pred Cccccccccc-ccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-Cc
Q 011801 37 PGGVIQLGLA-ENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DR 113 (477)
Q Consensus 37 ~~~~i~l~~~-~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~ 113 (477)
+..+|+|+.+ .++++ ++.+.+.+.+.... .....|++..|..++++++++++.+.+| +.+++ ++
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~ 104 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS-----------GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDG 104 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHH-----------THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTS
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhc-----------CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCc
Confidence 3458999984 45443 34455555442100 0133688888999999999999988777 34555 79
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC----CCCcccCHHHHHHHHHHHHHhC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI----SNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~----~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
|++|+|+++|+..++.+++++||.|+++.|+|.++...++.. |.+++.++++. ++++.+|+++|++++++
T Consensus 105 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----- 178 (407)
T 3nra_A 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----- 178 (407)
T ss_dssp EEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----
T ss_pred EEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc-CCEEEEeecccccccCcCCCcCHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999888877 99999999842 35788999999999875
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh-hhccCCCCcEEEEecCCc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI-QEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~-~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. . ..+++++++||||
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK 253 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV----DAENVVTIMGPSK 253 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS----CGGGEEEEECSSS
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc----cCCcEEEEeCccc
Confidence 788999999999999999999999999999999999999999999888776666655442 1 3578999999999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHHhc-cc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRKMS-SF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GI 345 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi 345 (477)
.+|++|+|+||++++++ +.+.+.... .+ ...+++.|.++..+|.+.+ .++++.+++++++++.+.+.|+++ |+
T Consensus 254 ~~g~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~ 329 (407)
T 3nra_A 254 TESLSGYRLGVAFGSRA-IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCEGV 329 (407)
T ss_dssp TTCCGGGCCEEEEECHH-HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT---THHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred ccCCCeeeEEEEEcCHH-HHHHHHHHHhhhccCCChHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999544 444443322 22 2356788888888887531 235667778888999999999988 88
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+..+.+|+|+|++++... ....++++.+++++||.++||+.|++..++++||+++. +++++++++++|+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 330 FARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp BCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred eeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 8888888899999998521 11225777777778999999999987778999999996 99999999999999997
Q ss_pred hh
Q 011801 426 QD 427 (477)
Q Consensus 426 ~~ 427 (477)
+.
T Consensus 404 ~~ 405 (407)
T 3nra_A 404 RY 405 (407)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 39
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=2.8e-44 Score=380.27 Aligned_cols=355 Identities=15% Similarity=0.217 Sum_probs=272.1
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHH-hcccCCCCc-cCCCcEEE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFM-GKGRGGRVT-FDPDRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~-~~~~g~~~~-~~~~~i~~ 116 (477)
++|+|+.+++.++++.+...+.+. . ....|++..|.+++|+++++++ .+..+..+. .++++|++
T Consensus 105 ~~i~l~~g~~~~~~~~~~~al~~~-------------~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~ 170 (546)
T 2zy4_A 105 KSLSYVRDQLGLDPAAFLHEMVDG-------------I-LGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA 170 (546)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHH-------------H-HTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE
T ss_pred hhhecccCCCCCCChHHHHHHHHh-------------h-hcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE
Confidence 378999998888765544444331 0 1257999989999999988765 433332222 25789999
Q ss_pred eCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 117 GGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 117 t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|+|+++++..++.+ +++|||.|++++|+|++|...+... .|+++++++++++++|.+|+++|++++. .
T Consensus 171 t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~ 244 (546)
T 2zy4_A 171 VEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD------P 244 (546)
T ss_dssp EEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS------T
T ss_pred ECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC------C
Confidence 99999999999988 5789999999999999998875432 2789999999877789999999987653 3
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHH--HhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFI--NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~--~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|+++|||||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++... ..+++++++||||
T Consensus 245 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~------~~~~~i~~~S~SK 315 (546)
T 2zy4_A 245 AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAI------CPENTLLVYSFSK 315 (546)
T ss_dssp TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHH------CGGGEEEEEESTT
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHh------CCCCEEEEEeCcc
Confidence 799999999999999999999999999999 7899999999999987543 3555544 2368999999999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHH-H------------h-------------------------cccCCCchHHHHHH--
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGR-K------------M-------------------------SSFGLVSSQTQYLL-- 308 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~-~------------~-------------------------~~~~~vs~~~q~~~-- 308 (477)
.+|+||+|+||++++++.+.+.+. . . .....++.+.|.++
T Consensus 316 ~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~ 395 (546)
T 2zy4_A 316 YFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMAL 395 (546)
T ss_dssp TTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHH
T ss_pred ccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHH
Confidence 999999999999997753333321 0 0 11124677778763
Q ss_pred ---HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh---cc--------CchHHHH
Q 011801 309 ---ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK---EK--------TLEGEIA 374 (477)
Q Consensus 309 ---~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~---~~--------~~~~e~~ 374 (477)
++++.+. +.++++.++.+++|++.+.+.|. .++.+.++++|+|+|++++...+ .. ... +.+
T Consensus 396 ~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~-~~~ 470 (546)
T 2zy4_A 396 FSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSS-TGD 470 (546)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC-HHH
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCC-HHH
Confidence 3556543 34577888899999999999996 66666778999999999874211 00 001 123
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++..++.+.||.|.||+.|+. ++++|||+++..+++++++++++|+++++++.
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999986 56899999997789999999999999997654
No 40
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.2e-44 Score=369.94 Aligned_cols=355 Identities=14% Similarity=0.144 Sum_probs=286.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.-. -.....|++..|..++|+++|+++++.+| +.+++++|++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~~ 110 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLR-----------EGVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACVP 110 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHH-----------HTGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHh-----------CCcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEEE
Confidence 46899999999885 4556665554210 01226798888999999999999998777 4567899999
Q ss_pred eCChHHHHHHHHHHhc--CCCC--eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 117 GGGATGANELIMFCLA--NPGD--AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 117 t~G~t~al~~i~~~l~--~~Gd--~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
|+|+++|+.+++.+++ ++|| .|+++.|+|.++...++.. |.+++.++++ .++|.+|+++|++++++ .++
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~~ 183 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRIL-GQKFESFDLF-EYRGEKLREKLESYLQT-----GQF 183 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHH-TCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHc-CCEEEEEeec-CCCCccCHHHHHHHHhc-----CCc
Confidence 9999999999999998 9999 9999999999999988877 9999999987 46788999999999842 278
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH-------HHhhhhccCCCCcEEEEec
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV-------AEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~-------~~~~~~~~~~~~~viiv~S 265 (477)
++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++. .++ ..+.. ..+++++++|
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~i~~~s 257 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD--YSHPGEPLYQPSVAN----YTDNYILALS 257 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC--CCSTTSSCCCCCGGG----TCSCEEEEEE
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC--cCcccccchhhccCC----CCCcEEEEEc
Confidence 9999999999999999999999999999999999999999998777632 222 22211 3578899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHH-----------------HHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNC-----------------GRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~-----------------~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
+||.+|++|+|+||++++++.+... +... ...+.++.+.|.++..+|.+.+..+.++++.+
T Consensus 258 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 258 SSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSV 337 (437)
T ss_dssp STTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred CccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 9999999999999999965544303 3322 22345888999999999876532122267788
Q ss_pred HHHHHHHHHHHHHHhhCCCeEe-------cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 327 KRLAKRHHNFTKGLEQVGINCL-------KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~-------~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
++++++++.+.+.|+++|+++. ++.+|+|+|++++. .+ ..++++.+.+ +||.+.||..|+...++
T Consensus 338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~~L~~-~gi~v~~~~~~~~~~~~ 409 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-MD------SSKLIEKFVR-YGMCAITLKTTGSKRNE 409 (437)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-CC------HHHHHHHHHH-TTEECEESTTTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-CC------HHHHHHHHHH-cCeEEeeccccCCCCCC
Confidence 8999999999999999998887 43788999999982 11 2256677765 49999999998865558
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++|||++..+++++++++++|++++++
T Consensus 410 ~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 410 AMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999977999999999999998864
No 41
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=2e-43 Score=360.91 Aligned_cols=355 Identities=22% Similarity=0.381 Sum_probs=283.7
Q ss_pred Cccccccccccc---ccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN---QLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n---~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
+.++|+|+.+.+ .++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.++++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~ 102 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 102 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHH
Confidence 346799999887 443 3445555443210 0123688888899999999999988766 446789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++
T Consensus 103 ~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 175 (406)
T 1xi9_A 103 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 175 (406)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred HEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCCCcCCcCCHHHHHHhhCc------Cc
Confidence 9999999999999999999999999999999999999888876 9999999987545788999999998854 78
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc-EEEEecCCcccC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL-IHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-viiv~SlSK~~g 271 (477)
++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+ ..++ +++++||||.+|
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~------~~~~~~i~~~s~sK~~~ 248 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSL------TKDVPVIVMNGLSKVYF 248 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHH------CSSSCEEEEEESTTTTC
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHc------CCCceEEEEeccccccC
Confidence 999999999999999999999999999999999999999999877743 33455544 2467 899999999999
Q ss_pred CCCceEEEEE--eCCH---HHHHHHHHhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 272 LPGFRVGIVY--SFND---TVVNCGRKMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 272 ~~G~RvG~i~--~~~~---~i~~~~~~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
++|+|+||++ ++++ .+.+.+.....+ +.++.+.|.++..+|+.. .+++++.+++++++++.+.+.|++. |
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 325 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPG 325 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 7651 444444433222 557889999999888532 1236777888999999999999988 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+.+|+|+|++++... . .+..++++.+++++||.+.||+.|+..+++++||+++ .+++++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP---W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEKFM 400 (406)
T ss_dssp EECCCCCBSSEECCEECSCS---C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC---C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 88777888999999887411 0 1123577777767799999999887655789999999 69999999999999998
Q ss_pred hhh
Q 011801 425 QQD 427 (477)
Q Consensus 425 ~~~ 427 (477)
++.
T Consensus 401 ~~~ 403 (406)
T 1xi9_A 401 KER 403 (406)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
No 42
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.9e-43 Score=358.18 Aligned_cols=352 Identities=16% Similarity=0.255 Sum_probs=287.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. +....|++ +..++++++++++.+.+| +.+++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~ 94 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLE------------QEIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLI 94 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHh------------CCCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeE
Confidence 357899999988775 3666666655311 11234654 569999999999998776 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc--CCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD--ISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+|+|+++|+++++.+++++||.|+++.|+|+++...++.. |.+++.++++ ..++|.+|+++|+++++ +++
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~ 166 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN-NRELIISPLQKLENGNYIMDYEDIENKIK-------DVK 166 (391)
T ss_dssp EESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHT-TCEEEECCCEECTTSCEECCHHHHHHHCT-------TEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHc-CCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCC
Confidence 9999999999999999999999999999999999888877 9999999987 55678899999998875 288
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKE---FEKNTITCMAPTKTFNIA 243 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHHTEEEEECSHHHHTCG
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcc---ccCcEEEEEechhhccCc
Confidence 99999999999999999999999999999999999999999887776655565544221 136789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhc---ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEe
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCL 348 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~---~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~ 348 (477)
|+|+||++++++.+.+.+.... .++..+.+.|.++...+.+. ++++++.+++++++++.+.+.|++. |+.+.
T Consensus 244 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 320 (391)
T 4dq6_A 244 GLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPKLKVR 320 (391)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEec
Confidence 9999999998756655554432 23357788888888877653 3457788889999999999999884 89999
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.+.+++++|++++... ....++++.+++++||.++||+.|+...++++|++++ .+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 321 KPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 9999999999998521 0123577777776799999999998777899999999 48999999999999876
No 43
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=1.2e-42 Score=347.91 Aligned_cols=337 Identities=17% Similarity=0.220 Sum_probs=276.9
Q ss_pred CCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 35 QNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
..+.++|+|+.++|+++ ++.+.+.+.+.- .....|++ .|.+++|+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~ 70 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAV-------------VKANRYAK-NEILMLGNKLAAHHQ--------VEAPS 70 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTG-------------GGTTSCCH-HHHHHHHHHHHHHTT--------SCGGG
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHH-------------hhCcCCCC-CchHHHHHHHHHHhC--------CChHH
Confidence 34667899999999984 466777666531 23456754 478999999999986 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++.+. ++.+|+++|++++++ +.+++
T Consensus 71 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~ 143 (354)
T 3ly1_A 71 ILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIA-GMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPS 143 (354)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCE
T ss_pred EEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCC
Confidence 999999999999999999999999999999999999888877 99999999864 578999999999873 13899
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCC-CcEEEEecCCcccCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR-DLIHIIYSLSKDMGL 272 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~-~~viiv~SlSK~~g~ 272 (477)
+|++++|+||||.+++.+++++|+++| ++|+++|+||+|+++.+.+.. .+...... .. +++++++||||.+|+
T Consensus 144 ~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~-~~~~~~~~----~~~~~~i~~~s~sK~~g~ 217 (354)
T 3ly1_A 144 IVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF-RSISPMIT----QGAENIILLKTFSKIHAM 217 (354)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC-CCSHHHHH----TTCSSEEEEEESSSTTCC
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc-CCHHHHhh----hcCCCEEEEeeChhhccC
Confidence 999999999999999999999999999 899999999999987766543 33333333 33 788999999999999
Q ss_pred CCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+|+||+++ ++.+.+.+......+.++.+.|.++..+|.+.+ ++++.+++++++++.+.+.|++.|+.+.++ .
T Consensus 218 ~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~ 291 (354)
T 3ly1_A 218 AGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDLKLPYLPS-E 291 (354)
T ss_dssp GGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-C
T ss_pred hhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCeECCC-C
Confidence 9999999999 455666666655556789999999999999754 467788899999999999999888887755 4
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|+|++++. + ..++.+.+. ++||.++ |+.++ .++++||+++ +++++++++++|++++++
T Consensus 292 ~~~~~~~~~~--~------~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 292 GNFVFHQLVV--P------LKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp SSEEEEECSS--C------HHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCC--C------HHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 5789999984 1 124666665 5699998 76543 5789999998 789999999999999875
No 44
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=5.8e-43 Score=351.52 Aligned_cols=323 Identities=17% Similarity=0.300 Sum_probs=261.8
Q ss_pred CccccccccccccccHH-HHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCFD-LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.|+|+++++ .+ . ......|++. +..++|+++|++++ +++++|+
T Consensus 28 ~~~~i~l~~~~~~~~~~~~v-----a--------------~~~~~~Y~~~-~~~~lr~~la~~~~--------~~~~~v~ 79 (356)
T 1fg7_A 28 GNGDVWLNANEYPTAVEFQL-----T--------------QQTLNRYPEC-QPKAVIENYAQYAG--------VKPEQVL 79 (356)
T ss_dssp TTCSEECSSCCCSSCCCCCC-----C--------------CCCTTSCCCS-SCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CCceEEeeCCCCCCCCCHhH-----h--------------hhhhccCCCc-cHHHHHHHHHHHhC--------CChHHEE
Confidence 45789999999998653 22 1 1235679876 48999999999995 5688999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++++++++.+++++| |+|+++.|+|+++...++.. |.+++.++++ ++|.+|+++++++++ ++++
T Consensus 80 ~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~-------~~~~ 149 (356)
T 1fg7_A 80 VSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD-------GVKV 149 (356)
T ss_dssp EESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT-------TEEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeeCC--CCCCCCHHHHHHHhc-------CCCE
Confidence 99999999999999999999 99999999999999988877 9999999876 367899999987663 6889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++||||||.+++.+++++|+++|+ +|+++|+||+|+++.. . .++..+.+ ..+++++++||||.+|++|
T Consensus 150 v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~---~~~~~~~~----~~~~~i~~~s~sK~~g~~G 220 (356)
T 1fg7_A 150 VYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP-Q---ASLAGWLA----EYPHLAILRTLSKAFALAG 220 (356)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-G---GCSGGGTT----TCTTEEEEEESSSTTCCGG
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-C---CcHHHHHh----hCCCEEEEecchHhhcCch
Confidence 999999999999999999999999999 9999999999997531 1 22223322 3577899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCce
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAG 353 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g 353 (477)
+|+||++++ +.+.+.++.....+.+++++|.++.++|.+.++ .++++.+++++++++.+.+.|++++ +....+.+|
T Consensus 221 ~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 297 (356)
T 1fg7_A 221 LRCGFTLAN-EEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSET 297 (356)
T ss_dssp GCCEEEEEC-HHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSS
T ss_pred hhhEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCC
Confidence 999999995 455565655555556899999999999987554 2477888899999999999999886 222334567
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC-CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP-GSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p-g~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+|+|++++ + ..++++.+ .++||.++| |+.|+. ++++||+++ +++++++++++|+++
T Consensus 298 ~~~~~~~~---~------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 298 NYILARFK---A------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp SEEEEEET---T------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred eEEEEECC---C------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 89999987 1 12466666 567999999 887764 569999998 689999999998753
No 45
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=2.5e-43 Score=355.47 Aligned_cols=338 Identities=22% Similarity=0.366 Sum_probs=274.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 93 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLK------------EGKTHYTDSRGILELREKISELYKDKYK--ADIIPDNII 93 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHH------------cCccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 456899999988763 4555555544210 1134688878999999999999998776 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++ +|+++|++++++ ++++|
T Consensus 94 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~--------~d~~~l~~~l~~------~~~~v 158 (370)
T 2z61_A 94 ITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL-GAKPVFCD--------FTVESLEEALSD------KTKAI 158 (370)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC--------SSHHHHHHHCCS------SEEEE
T ss_pred ECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeC--------CCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888876 99998887 578999888753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+ |+++|+++|+++|+||+|+++.+++. +.++..+.. ..+++++++||||.+|++|+
T Consensus 159 ~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 229 (370)
T 2z61_A 159 IINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDE----NLEKTILINGFSKLYAMTGW 229 (370)
T ss_dssp EEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCT----TCSSEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccC----CCCcEEEEecChhccCCccc
Confidence 9999999999999966 89999999999999999998777653 344444311 34788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
|+||++++++ +.+.++... ..+.++++.|.++..+|+. . +.++++.+++++++++.+.+.|++.|+++..+.+
T Consensus 230 r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 305 (370)
T 2z61_A 230 RIGYVISNDE-IIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIG 305 (370)
T ss_dssp CCEEEECCHH-HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCB
T ss_pred eEEEEEECHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCc
Confidence 9999999664 444444332 2235788999999888875 3 4457788889999999999999988988888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|+|++++. + ..++.+.+++++||.+.||+.|+..+++++|++++ .+++++++++++|+++++
T Consensus 306 ~~~~~~~~~~--~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE--D------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS--C------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC--C------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 9999999874 1 22577777767799999999887545789999999 599999999999999875
No 46
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.4e-43 Score=361.11 Aligned_cols=354 Identities=20% Similarity=0.274 Sum_probs=291.6
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.++ ++.+.+.+.+..+ .....|++.. .++++++++++.+.++ +.+++++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~--~~l~~~l~~~l~~~~g--~~~~~~~v~ 123 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGR------------EHIFGYNYFN--DDLYQAVIDWERKEHD--YAVVKEDIL 123 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHH------------HCCSSCBCCC--HHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCC--HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999987775 4666666655211 1234566543 8999999999998777 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|++.++.++.++||.|+++.|+|+++...+... |.+++.++++ ..++|.+|+++|++++++ .++++
T Consensus 124 ~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~ 197 (421)
T 3l8a_A 124 FIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN-DHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKI 197 (421)
T ss_dssp EESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHT-TEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHC-CCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeE
Confidence 9999999999999999999999999999999999888876 9999999986 566788999999999974 28999
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+.+..+.++..+..+ ..++++++.|+||.+|++|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~g~~G 274 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS---YKDFTIILSSATKTFNIAG 274 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT---GGGTEEEEECSHHHHTCGG
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch---hcCcEEEEEeChhhccCch
Confidence 9999999999999999999999999999999999999999988877666666554321 2367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc---ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~---~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~ 350 (477)
+|+||++++++.+.+.+.... .++..+++++.++.+++... ++++++.+++++++++.+.+.|++. ++.+..+
T Consensus 275 ~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 275 TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 999999998666666554332 34457888888888887642 4567888889999999999999885 8999999
Q ss_pred CceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 351 NAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 351 ~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+++++|++++.. .+. .++++.+++++||.+.||+.|+..+++++||+++. +++++++++++|+++++
T Consensus 352 ~~~~~~~v~~~~~~~~~------~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQ------PQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGTCCT------THHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccCCCH------HHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999999852 111 25777787788999999999987778999999994 89999999999998874
No 47
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=7.1e-44 Score=363.35 Aligned_cols=344 Identities=15% Similarity=0.159 Sum_probs=270.4
Q ss_pred cccccccccc--cccH----HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAEN--QLCF----DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n--~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
++|+|+.+.. ..++ +.+.+.+.+... -.....|++..|.+++|+++|+++++.+| +.++++
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~ 95 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA-----------KKMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcc-----------cccccCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 4799998873 3222 234444333100 01345798888999999999999987665 456789
Q ss_pred cEEE--eCChHHHHHHHHHHhc---CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVM--GGGATGANELIMFCLA---NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~--t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|++ |+|+++|+.+++.++. +|||.|++++|+|+.+...++.. |.+++.++++..+++.+|++++++.+++.
T Consensus 96 ~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 172 (401)
T 7aat_A 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISKI-- 172 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTS--
T ss_pred ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-CCeeEeeeeeccccCccCHHHHHHHHHhC--
Confidence 9987 9999999999887664 89999999999999999988877 99999999865567899999998888642
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEec
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+.. ..+++++++|
T Consensus 173 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 247 (401)
T 7aat_A 173 -PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE----QGIDVVLSQS 247 (401)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCCEEEEE
T ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh----cCCcEEEEec
Confidence 34788999999999999999999999999999999999999999998877543 2334444333 4578899999
Q ss_pred CCcccCCCCceEEEEEe--CCHH----HHHHHHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYS--FNDT----VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHH 334 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~--~~~~----i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~ 334 (477)
|||.||++|+|+||+++ .++. +....+.. .....++.+.|.+++.++.++++. .+++++.+++++++++
T Consensus 248 ~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 327 (401)
T 7aat_A 248 YAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 2333 33333322 223346678888888888886542 4557788899999999
Q ss_pred HHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++.| +++..+++|+|+|++++. +.+..+++++||.+.|+ +|++++..++
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris~~~~~~ 386 (401)
T 7aat_A 328 QLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGVAS 386 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEEeccCCh
Confidence 9999999886 667788999999987762 34567778889999765 6999998777
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 387 ~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 387 SNVGYLAHAIHQVT 400 (401)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 77999999999876
No 48
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=5.6e-43 Score=358.01 Aligned_cols=351 Identities=23% Similarity=0.373 Sum_probs=283.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+ +.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 106 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENK------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 106 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTC------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 356899999988753 34455555 4211 1134688888899999999999998766 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+++|.+ +++|++++++ ++++|
T Consensus 107 ~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v 178 (409)
T 2gb3_A 107 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGI 178 (409)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEE
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEE
Confidence 9999999999999999999999999999999999888877 99999999875456666 7888877753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.+. +.+ ..+++++++|+||.+|++|+
T Consensus 179 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~---~~~---~~~~~i~~~s~sK~~g~~G~ 251 (409)
T 2gb3_A 179 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA---LSI---ESDKVVVIDSVSKKFSACGA 251 (409)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG---GGS---CCTTEEEEEESTTTTTCGGG
T ss_pred EECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc---ccc---CCCCEEEEecchhccCCccc
Confidence 999999999999999999999999999999999999999877765 33343 111 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~g 353 (477)
|+||++++++.+.+.+......+ .++.+.|.++..+|+.. +.++++.+++++++++.+.+.|++.|+++ ..+.+|
T Consensus 252 r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 328 (409)
T 2gb3_A 252 RVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGA 328 (409)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBS
T ss_pred eEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCee
Confidence 99999998734555444433333 57889999999999753 34577888889999999999999889888 778889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHh-----cCeEEeCCCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVND-----VKLNVSPGSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~-----~gI~v~pg~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++. . +..++++.++++ +||.+.||..|+. .+++++||+++ .+++++++++++|+++++
T Consensus 329 ~~~~~~~~~-~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 329 FYITAELPV-E------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp SEEEEECSS-S------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC-C------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 999999871 1 123577777766 6999999998865 24689999999 699999999999999997
Q ss_pred hhh
Q 011801 426 QDK 428 (477)
Q Consensus 426 ~~~ 428 (477)
+.+
T Consensus 401 ~~~ 403 (409)
T 2gb3_A 401 MFC 403 (409)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
No 49
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=2.7e-42 Score=346.84 Aligned_cols=330 Identities=16% Similarity=0.235 Sum_probs=271.7
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.. .....|++ .+..++|+++|++++ +++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~ 89 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSS-------------VETEIYPD-GWASSLRKEVADFYQ--------LEEEELIF 89 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCB-------------SCCCBC-----CHHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC-cchHHHHHHHHHHhC--------CChhhEEE
Confidence 47899999999985 466777776631 23456755 478999999999997 56889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++++++.++.++||+|+++.|+|+++...++.. |.+++.+++++ ++.+|++++++++++ ++++|+
T Consensus 90 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~ 160 (363)
T 3ffh_A 90 TAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE-GAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVW 160 (363)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHH-TCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEE
Confidence 999999999999999999999999999999999988887 99999999874 578999999998853 799999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++|+||||.+++.+++.+|++.|++ |+++|+||+|+++.+ +. +.+...... ..+++++++||||.+|++|+|
T Consensus 161 ~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~~----~~~~~i~~~s~sK~~g~~G~r 233 (363)
T 3ffh_A 161 ICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLVR----TYKNLIITRTFSKIYGLASAR 233 (363)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGGG----TCTTEEEEEESSSTTCCSSCC
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHhh----cCCCEEEEeechhhhcCchhc
Confidence 99999999999999999999998887 999999999998766 32 233333333 468899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-VGINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~gi~~~~~~~g~~ 355 (477)
+||+++ ++.+.+.++.....+.++.+.|.++..+|.+.+ ++++.+++++++++.+.+.|++ .|+++.++. |+|
T Consensus 234 ~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~ 307 (363)
T 3ffh_A 234 VGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQA----FIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNF 307 (363)
T ss_dssp CEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC-SSE
T ss_pred eeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHhhCCCceECCCC-CeE
Confidence 999999 555556565555556689999999999998654 4677888899999999999999 699887655 468
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|++++. ...++.+.+.+ +||.++||+.|+. ++++|++++ +++++++++++|++++
T Consensus 308 ~~~~~~~--------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 308 VLIDLGI--------EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EEEECSS--------CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred EEEECCC--------CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 9999974 12246666664 6999999998865 789999998 8999999999998763
No 50
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=4.1e-42 Score=346.05 Aligned_cols=341 Identities=18% Similarity=0.250 Sum_probs=277.5
Q ss_pred CCCCCCCCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 29 NPFHPTQNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 29 ~~~~~~~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
.+|++.. +.++|+|+.++|+++ ++.+.+.+.+.-. -.....|++ .|..++|+++|++++ +
T Consensus 22 ~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~~y~~-~~~~~l~~~la~~~g------~ 82 (367)
T 3euc_A 22 GAYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLG-----------EVALNRYPV-PSSEALRAKLKEVMQ------V 82 (367)
T ss_dssp CCSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHH-----------HHHTTCSCC-CCHHHHHHHHHHHHT------C
T ss_pred CCCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhh-----------hhhhhcCCC-CcHHHHHHHHHHHhC------C
Confidence 4566654 678999999999985 4556665554210 003456876 478999999999996 2
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
. ++++|++|+|+++|+.+++.++.++||.|+++.|+|.++...++.. |.+++.++++. +|.+|+++|++++++.
T Consensus 83 ~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~~-- 156 (367)
T 3euc_A 83 P-AGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFA-GLEFVGVPLRA--DFTLDRGAMLAAMAEH-- 156 (367)
T ss_dssp C-TTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTT-TCEEEEEECCT--TSCCCHHHHHHHHHHH--
T ss_pred C-CcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHHHhhcc--
Confidence 1 6789999999999999999999999999999999999999888877 99999999875 6789999999999764
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|++++|+||||.+++.+++++|+++|+++ |+++|+||+|+++.. ....+ ... ..+++++++|
T Consensus 157 ---~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~~~~---~~~----~~~~~i~~~s 224 (367)
T 3euc_A 157 ---QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ESWMS---RLT----DFGNLLVMRT 224 (367)
T ss_dssp ---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CCSGG---GGG----TCTTEEEEEE
T ss_pred ---CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cchHH---HHh----hCCCEEEEec
Confidence 789999999999999999999999999999999 999999999997542 22222 222 4578899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
|||. +++|+|+||++++ +.+.+.+......+..+.+.|.++..+|++.+ ++++.+++++++++.+.+.|+++ |
T Consensus 225 ~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g 298 (367)
T 3euc_A 225 VSKL-GLAGIRLGYVAGD-PQWLEQLDKVRPPYNVNVLTEATALFALEHVA----VLDEQAAQLRAERSRVAEGMAAHGG 298 (367)
T ss_dssp CCCT-TSCSCCEEEEEEC-HHHHHHHGGGCCSSCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred chhh-cccccCceeeeeC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 8999999999995 45555565555555689999999999998843 46778888999999999999998 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+.+ ..|+|+|++++ + ..++.+.+ .++||.++||+.|+...++++|++++ +++++++++++|++++
T Consensus 299 ~~~~~-~~~~~~~~~~~---~------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 299 VTVFP-SAANFLLARVP---D------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASL 365 (367)
T ss_dssp CEECC-CSSSEEEEECS---C------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred cEECC-CCCeEEEEECC---C------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHh
Confidence 88654 45679999987 1 12455554 56799999999887666889999998 8999999999999886
Q ss_pred h
Q 011801 425 Q 425 (477)
Q Consensus 425 ~ 425 (477)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=4.5e-43 Score=354.97 Aligned_cols=342 Identities=21% Similarity=0.349 Sum_probs=276.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. ....|++..|..++|++++++++ .++++|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~ 83 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALG-------------RQDQYAPPAGLPALREALAEEFA--------VEPESVVV 83 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTT-------------TSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHH-------------HhcCCCCCCCCHHHHHHHHHhcC--------CChhhEEE
Confidence 35799999988764 4566666655311 13468887789999999999976 56789999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc--CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD--ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.++++ . .++.+|+++|++++++ ++++
T Consensus 84 ~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~------~~~~ 155 (381)
T 1v2d_A 84 TSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTP-EGFRLDLSALEKALTP------RTRA 155 (381)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEET-TEEECCHHHHHTTCCT------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCCCC-ccCCcCHHHHHHhcCc------CCEE
Confidence 999999999999999999999999999999999888776 9999999986 3 2478999999988743 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+ +....++..+ ..+++++++|+||.+|++|
T Consensus 156 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~------~~~~~~~~~s~sK~~~~~G 228 (381)
T 1v2d_A 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF------APERTFTVGSAGKRLEATG 228 (381)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH------CTTTEEEEEEHHHHTTCGG
T ss_pred EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh------cCCCEEEEeechhhcCCcc
Confidence 99999999999999999999999999999999999999998777 4444555544 2367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++.+ +.+.... ..+.++++.|.++..+|....+ ++++++.+++++++++++.+.|++.|+++..+.+
T Consensus 229 ~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 306 (381)
T 1v2d_A 229 YRVGWIVGPKEFM-PRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEG 306 (381)
T ss_dssp GCCEEEECCTTTH-HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSB
T ss_pred cceEEEEeCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCc
Confidence 9999999966544 3333222 2345788899988888875422 3457788889999999999999999999988888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
|+|+|++++.. + +..++.++||.+.||+.|.. ..++++||+++. +++++++++++|++++++.+.
T Consensus 307 ~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 307 TYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp SSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 99999998742 1 34456778999999998875 346799999997 999999999999999876543
No 52
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=2.2e-42 Score=353.87 Aligned_cols=348 Identities=15% Similarity=0.241 Sum_probs=273.6
Q ss_pred ccccccccccc-----cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN-----QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n-----~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+.. +. +++.+.+.+.+... .....|++..|.+++|+++++++....+. .++
T Consensus 37 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~la~~~~~~~~~---~~~ 101 (413)
T 3t18_A 37 EAVINAALGTLLDDKGKIIALPSVYDRLDEMDR------------SHIASYAPIEGEKDYRKIVIDTLFGPYKP---EGY 101 (413)
T ss_dssp GGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCH------------HHHHSCCCTTCCHHHHHHHHHHHHGGGCC---SSE
T ss_pred cceEeccccCccCCCCCcCChHHHHHHHHhcCc------------ccccCcCCCCCCHHHHHHHHHHHhcccCc---ccc
Confidence 36899998863 33 45667777665311 13457888889999999999999655431 134
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++|+..++.+++++||.|++++|+|+.+...++.. |.+++.++++.+ +|.+|+++|++++++.... +
T Consensus 102 ~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~--~ 177 (413)
T 3t18_A 102 ISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEF-GRNFKTFEFFTD-DFAFNIDVYKEAIDEGIRD--S 177 (413)
T ss_dssp EEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHH-TCEEEEECCBCT-TSSBCHHHHHHHHHHHHHH--C
T ss_pred CcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHh-CCeEEEeeccCC-CCCcCHHHHHHHHHHHhhc--C
Confidence 59999999999999999999999999999999999999988887 999999998543 3889999999999753221 4
Q ss_pred ee-EEEEeCC-CCCcccCCCHHHHHHHHHHHH------hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc--EE
Q 011801 192 IK-GLIITNP-SNPLGTTLDRDTLKSLVSFIN------DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL--IH 261 (477)
Q Consensus 192 ~k-~vii~nP-~NPtG~~~~~~~l~~l~~~~~------~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~--vi 261 (477)
++ ++++++| |||||.+++.+++++|+++|+ ++|++||+||+|.++.+++....++.....+ ..++ ++
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~---~~~~~~~i 254 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSN---LPRNLFVV 254 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTT---CCTTEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhh---cCCCeeEE
Confidence 55 7888999 999999999999999999999 8999999999999988776554554433221 2234 58
Q ss_pred EEecCCcccCCCCceEEEEEeC--CHHHHHHHHHh------cccCCCchHHHHHHHHhcCChhh--HHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSF--NDTVVNCGRKM------SSFGLVSSQTQYLLASMLSDDEF--VDNFLVETSKRLAK 331 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~--~~~i~~~~~~~------~~~~~vs~~~q~~~~~~L~~~~~--~~~~~~~~~~~l~~ 331 (477)
+++||||.+|++|+|+||+++. ++.+.+.+.+. ..+..++.++|.++..+|.+.++ ..+++++.++++++
T Consensus 255 ~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 334 (413)
T 3t18_A 255 VAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKS 334 (413)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999983 44454444332 12345788999999999988762 14556677889999
Q ss_pred HHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 332 RHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 332 r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+++.+.+.|++.|+++..+++|+|+|+++.. ..++++.+ .++||.+.|| ++++||+++..+++
T Consensus 335 ~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~~gv~v~~g-------~~~iRis~~~~~~~ 397 (413)
T 3t18_A 335 RADVFVTAAKENKLTMIPYFGGFFTFIPTDK---------AFDIVKDL-EKENIFTIPS-------AKGIRVAICGVGEE 397 (413)
T ss_dssp HHHHHHHHHHHTTCCCBCCCSSSCEEEECSC---------HHHHHHHH-HHTTEECEEC-------SSEEEECTTTSCGG
T ss_pred HHHHHHHHHHHcCCCccCCCceEEEEeCCCC---------HHHHHHHH-HhCCEEEecC-------CCceEEEEeeCCHH
Confidence 9999999999999999999999999997742 12466554 6779999997 56899999876666
Q ss_pred HHHHHHHHHHHHHhhh
Q 011801 412 TLQVALNRIAAFVQQD 427 (477)
Q Consensus 412 ~l~~~l~~l~~~~~~~ 427 (477)
++ +++|++++++.
T Consensus 398 ~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 398 KI---PKLVQRLAFYT 410 (413)
T ss_dssp GH---HHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHH
Confidence 66 88888888763
No 53
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=3.6e-43 Score=361.94 Aligned_cols=352 Identities=18% Similarity=0.257 Sum_probs=276.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+++++.++ ++.+.+.+.+.... .........|++..|.++||+++|+|+.+ + +.+++++|+
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~--~~~~~~~i~ 123 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHE-------LSTIEGYSGYGAEQGAKPLRAAIAKTFYG--G--LGIGDDDVF 123 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHH-------TTSTTTCCCCCCTTCCHHHHHHHHHHHHT--T--TTCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhc-------ccccCCccCCCCCCCCHHHHHHHHHHHHc--c--CCCCcceEE
Confidence 347899999987764 35555555442110 00001234788878999999999999973 2 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
+|+|+++++.++ ..++++||.|++++|+|+++...++.. | .+++.++++..+++..++++
T Consensus 124 ~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 195 (432)
T 3ei9_A 124 VSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------ 195 (432)
T ss_dssp EESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------
T ss_pred ECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh------
Confidence 999999999985 677899999999999999998887766 5 36788888765566666443
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
..++++|++++||||||.+++.+++++|+++|+++|++||+||+|+++++++.. .++..+.. ..++++++
T Consensus 196 -----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~----~~~~~i~~ 265 (432)
T 3ei9_A 196 -----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-RSIFEIPG----AEEVAMET 265 (432)
T ss_dssp -----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC-SSGGGSTT----GGGTEEEE
T ss_pred -----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC-CChhhcCC----CCCeEEEE
Confidence 237899999999999999999999999999999999999999999988776433 44444321 24678999
Q ss_pred ecCCcccCCCCceEEEEEeCCHH-------HHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDT-------VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~-------i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~ 334 (477)
+||||.+|++|+|+||++++++. +...+.+. ..+..+++++|.++.+++.+.. ..++++.+++++++++
T Consensus 266 ~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~ 343 (432)
T 3ei9_A 266 ASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENTN 343 (432)
T ss_dssp EESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHHH
T ss_pred ecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence 99999999999999999998766 13444332 2344578899999998887543 3567888999999999
Q ss_pred HHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHH
Q 011801 335 NFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQ 414 (477)
Q Consensus 335 ~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~ 414 (477)
.+.+.|++.|+++..+.+|+|+|++++.. . ..+++..++++.||.+.||+.|++.+++++||+++. ++++++
T Consensus 344 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~ 415 (432)
T 3ei9_A 344 IIIDTFTSLGYDVYGGKNAPYVWVHFPNQ-S------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENIL 415 (432)
T ss_dssp HHHHHHHHTTCCEEECSSSSEEEEECTTS-C------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHCCceecCCCcceEEEEECCCC-C------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHH
Confidence 99999999999988877889999999821 1 235778888888999999999987778999999975 999999
Q ss_pred HHHHHHHHHHhhh
Q 011801 415 VALNRIAAFVQQD 427 (477)
Q Consensus 415 ~~l~~l~~~~~~~ 427 (477)
+++++|++--..+
T Consensus 416 ~~l~rl~~~~~~~ 428 (432)
T 3ei9_A 416 EACRRFKQLYKHH 428 (432)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhc
Confidence 9999999866543
No 54
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=2.3e-42 Score=352.78 Aligned_cols=358 Identities=20% Similarity=0.306 Sum_probs=281.9
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+.+.+.+.+.+.-. .+ ..... |++..|..++|+++|+++.+.+| +.+++++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~------~~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 102 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLE------KE---PKSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIV 102 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHH------HC---GGGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHh------hc---ccccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEE
Confidence 57999776532 255666665544210 00 01234 88888999999999999977665 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++....+.++++|
T Consensus 103 ~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v 178 (407)
T 2zc0_A 103 ITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQL-GAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLI 178 (407)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEE
Confidence 9999999999999999999999999999999998888876 999999998743 389999999987432223478887
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. ..+++++++||||.+| +|
T Consensus 179 ~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~-~G 252 (407)
T 2zc0_A 179 YTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD-----NEGRVIVAGTLSKVLG-TG 252 (407)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC-----SSCCEEEEEESTTTTC-TT
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC-----CCCCEEEEcccccccC-CC
Confidence 5789999999999999999999999999999999999998877665445554431 2367899999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHHHHHHHHHhhC--CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVD-NFLVETSKRLAKRHHNFTKGLEQV--GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~-~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~ 349 (477)
+|+||++++ +.+.+.+...... ...+++.|.++..+|++..+ + .++++.+++++++++.+.+.|++. |+.+..
T Consensus 253 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (407)
T 2zc0_A 253 FRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK 330 (407)
T ss_dssp SCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC
T ss_pred cceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec
Confidence 999999996 4455544433222 23578999999999987643 4 667788889999999999999874 677777
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+|+|++++...+ ..++++.+++++||.+.||+.|... .++++||+++..+++++++++++|++++++
T Consensus 331 ~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 331 PIAGMFVMFFLPEGAD------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCC------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 7888999999975221 2257777777669999999988653 468999999876789999999999999875
No 55
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=1.7e-42 Score=352.82 Aligned_cols=350 Identities=17% Similarity=0.290 Sum_probs=277.4
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+++.+.+.+.+.... . -.....|++..|..++|+++|++++ +++++|+
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v~ 95 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILRE-----K----GEVALQYSPTEGYAPLRAFVAEWIG--------VRPEEVL 95 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHH-----H----HHHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHh-----c----chhhhCCCCCCCCHHHHHHHHHHhC--------CChhhEE
Confidence 57899766422 2556666665542100 0 0123578887899999999999995 4678999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++. ++++|
T Consensus 96 ~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~v 166 (397)
T 2zyj_A 96 ITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRFLTVPAGEE---GPDLDALEEVLKRE-----RPRFL 166 (397)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHC-----CCSCE
T ss_pred EeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEecCcCCC---CCCHHHHHHHHhhc-----CCeEE
Confidence 9999999999999999999999999999999999888876 999999998752 38999999998742 67887
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+. ..+++++++|+||.+| +|
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~-~G 243 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA--GYPGVIYLGSFSKVLS-PG 243 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH--TCCCEEEEEESTTTTC-GG
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc--CCCeEEEEeccccccc-cc
Confidence 4789999999999999999999999999999999999998877665556665552200 0167899999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~ 349 (477)
+|+||+++++ .+.+.+.... . ....++++|.++..+|++.++ +++++.+++++++++.+.+.|++. |+.+..
T Consensus 244 ~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~ 320 (397)
T 2zyj_A 244 LRVAFAVAHP-EALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPKEVRYTR 320 (397)
T ss_dssp GCCEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC
T ss_pred ceeEEEecCH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc
Confidence 9999999964 4444443322 1 233688999999999988653 567888899999999999999875 788877
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+|+|+|++++...+ ..++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|++++++.
T Consensus 321 ~~~g~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 321 PKGGMFVWMELPKGLS------AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCC------HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999975221 22577777766 9999999988653 4689999998768999999999999998753
No 56
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=4.9e-43 Score=359.77 Aligned_cols=345 Identities=16% Similarity=0.188 Sum_probs=273.0
Q ss_pred cccccccccc---ccc-c--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE---NQL-C--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~---n~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. +.. . ++.+.+.+.+.-+. .....|++..|.+++|+++++++....+ ..+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA-----------GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAA 115 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc-----------CCCCCCCCCCCcHHHHHHHHHHhcCCCc--ccccc
Confidence 3789999983 332 2 25566655542100 1235788889999999999999975433 23368
Q ss_pred C--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 D--RIVMGGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~--~i~~t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+ +|++|+|+++|+.+++ .+++++||.|++++|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 116 ~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 192 (420)
T 4f4e_A 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMA-GFEVVAYPYYDAKTNGVNFDGMLAALNGY-- 192 (420)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHT-TCCEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred CceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEeeeeccccCccCHHHHHHHHHhC--
Confidence 8 8999999999999994 466899999999999999999888877 99999999844457899999999998632
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. ....++..+.. ..+++++++||
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~ 267 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA----ANLNVFVSSSF 267 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh----cCCCEEEEEeC
Confidence 2367899999999999999999999999999999999999999999988764 23455555443 45789999999
Q ss_pred CcccCCCCceEEEEEe--CCHHHHH-H---HHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FNDTVVN-C---GRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~~i~~-~---~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~ 335 (477)
||.+|++|+|+||+++ .++.+.. . .+.. ..+..++.+.|.+++.+|.+..+. ++++++.+++++++++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 4444332 2 2221 234456789999999999886531 46678889999999999
Q ss_pred HHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+.+.|++. |+.+..+++|+|+|++++. +.+..+++++||.+.|+ .|++++..+++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~ 406 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST----------GRICVAALNTR 406 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------SEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEEecCCHH
Confidence 99999987 7788888999999998852 24566677789999985 29999977888
Q ss_pred HHHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAFV 424 (477)
Q Consensus 412 ~l~~~l~~l~~~~ 424 (477)
++++++++|++++
T Consensus 407 ~i~~~~~~l~~~l 419 (420)
T 4f4e_A 407 NLDVVANAIAAVL 419 (420)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999876
No 57
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=8.3e-43 Score=358.38 Aligned_cols=320 Identities=18% Similarity=0.207 Sum_probs=253.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH--HHHHHHhcCC------------CCeEEEcCCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN--ELIMFCLANP------------GDAFLVPSPY 144 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al--~~i~~~l~~~------------Gd~vlv~~P~ 144 (477)
...|++..|.++||+++|+|++ +++++|++|+|+++++ .+++.++..+ +|+|++++|+
T Consensus 69 ~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 69 CRNYGGLLGIADIRELWAEALG--------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp TTSSCCSSCCHHHHHHHHHHHT--------CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESC
T ss_pred hhCCCCCCCCHHHHHHHHHHhC--------CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCc
Confidence 5589999999999999999995 5789999999999997 6777877655 3579999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE-EeCCCCCcccCCCHHHHHHHHHHHH-h
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI-ITNPSNPLGTTLDRDTLKSLVSFIN-D 222 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi-i~nP~NPtG~~~~~~~l~~l~~~~~-~ 222 (477)
|+++...++.. |.++++++++.+ .+|+++|++++++ .++++|+ +++||||||.+++.+++++|+++|+ +
T Consensus 141 y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~ 211 (422)
T 3d6k_A 141 YDRHFTITEHF-GFEMINVPMTDE---GPDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAA 211 (422)
T ss_dssp CHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS
T ss_pred cHHHHHHHHHc-CCEEEecCCCCC---CCCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhc
Confidence 99999988887 999999998753 3899999998853 2688888 6899999999999999999999999 9
Q ss_pred cCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccC
Q 011801 223 KNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFG 298 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~ 298 (477)
+|++||+||+|+.+.| .+..+.++..+....+ ..+++++++||||. ++||+|+||++++++ +.+.+.+.. ..+
T Consensus 212 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~GlriG~~~~~~~-l~~~l~~~~~~~~~ 288 (422)
T 3d6k_A 212 PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG-NPNRFWFMSSTSKI-THAGSGVSFFASSKE-NIEWYASHANVRGI 288 (422)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-CTTCEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCS
T ss_pred cCCEEEEECCccccccCCCCCCCcChhhHhhccC-CCCcEEEEcChhhh-cCcccceEEEEeCHH-HHHHHHHHHHhhcC
Confidence 9999999999985333 3334456544321000 35789999999999 679999999999654 444444332 224
Q ss_pred CCchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhccCchHH
Q 011801 299 LVSSQTQYLLASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 299 ~vs~~~q~~~~~~L~~-~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
.++.++|.++..+|++ +.+ ++++++.++.++++++.+.+.|.+ .| +.+..+++|+|+|++++.. ..
T Consensus 289 ~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~ 360 (422)
T 3d6k_A 289 GPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TA 360 (422)
T ss_dssp CCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CH
T ss_pred CCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CH
Confidence 5788999999999998 444 677888889999999988888765 34 5666788899999999853 11
Q ss_pred HHHHHHHHHhcCeEEeCC-CCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 373 IALWRTIVNDVKLNVSPG-SSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg-~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++ ...+.++||.++|| ..|.. ..++++||+++..+++++++++++|++++++.
T Consensus 361 ~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 361 SRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp HHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 234 34566779999994 55642 23689999998668999999999999998753
No 58
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=4.8e-43 Score=357.46 Aligned_cols=350 Identities=19% Similarity=0.273 Sum_probs=265.6
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-.. .........|++..|.+++|+++|+++. +| + +++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~ 99 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIAR-------LSSPTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIF 99 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHH-------HTSSSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEE
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhc-------ccccccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEE
Confidence 346899999988653 45555555442100 0000123468777899999999999964 23 3 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++++.+++.. +++||.|++++|+|+++...++.. |.+ ++.++++.++++..+++++ .++++
T Consensus 100 ~~~G~~~al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~ 166 (400)
T 3asa_A 100 ISDGAKVDLFRLLSF-FGPNQTVAIQDPSYPAYLDIARLT-GAKEIIALPCLQENAFFPEFPED-----------THIDI 166 (400)
T ss_dssp EESCHHHHHHHHHHH-HCSSCEEEEEESCCHHHHHHHHHT-TCSEEEEEECCGGGTTCCCCCTT-----------CCCSE
T ss_pred EccChHHHHHHHHHH-cCCCCEEEECCCCcHHHHHHHHHc-CCcceEecccchhcCcccChhhc-----------cCccE
Confidence 999999999997654 589999999999999999888776 998 9999987555565554321 27889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++....++..+.. ..+++++++||||.+|++|
T Consensus 167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD----ARFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT----GGGTEEEEEECCGGGTTTT
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC----CCCceEEEecchhhcCCcc
Confidence 999999999999999999999999999999999999999987665432334433311 1357899999999999999
Q ss_pred ceEEEEEeCCHH-------HHHHHH--HhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 275 FRVGIVYSFNDT-------VVNCGR--KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 275 ~RvG~i~~~~~~-------i~~~~~--~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
+|+||++++++. +..... ....++.++.++|.++..+|++. ++++.+++++++++.+.+.|++.|+
T Consensus 243 lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~ 317 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRKALLATGF 317 (400)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999997765 443332 22334568899999988888654 2566778888999999999999899
Q ss_pred eEecCCceEEEEee-ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMD-LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 346 ~~~~~~~g~~~~~~-l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
++..+.+|+|+|++ ++...+.. +++..+++++||.+.||+.|+..+++++||++. .+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 318 EVFGGEHAPYLWVKPTQANISDR------DLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAACERLQMAP 390 (400)
T ss_dssp EEEECSSSSEEEEECCCTTCCTT------THHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHHHHHHHC--
T ss_pred eeeCCCCceEEEEeccCCCCCHH------HHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHHHHHHHHHH
Confidence 98887788999999 77432221 466777777899999999997656789999964 48999999999999998
Q ss_pred hhh
Q 011801 425 QQD 427 (477)
Q Consensus 425 ~~~ 427 (477)
+++
T Consensus 391 ~~~ 393 (400)
T 3asa_A 391 ALQ 393 (400)
T ss_dssp ---
T ss_pred Hhh
Confidence 753
No 59
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=2e-42 Score=351.89 Aligned_cols=344 Identities=15% Similarity=0.172 Sum_probs=271.8
Q ss_pred cccccccccc---cccc-H--HHHHHHHHh-CCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVIQLGLAE---NQLC-F--DLIKDWITK-NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i~l~~~~---n~~~-~--~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++|+|+.+. +... + +.+.+.+.+ .... .....|++..|.+++|+++|+++....+ ..++
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~ 92 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVLK 92 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-----------cccccCCCCCchHHHHHHHHHHHhcCCc--cccc
Confidence 4689999984 3222 2 455555444 2110 1235788888999999999999986443 2346
Q ss_pred CC--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PD--RIVMGGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~--~i~~t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
++ +|++|+|+++|+.+++ .+++++||.|+++.|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 93 ~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 170 (397)
T 3fsl_A 93 QQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKTL- 170 (397)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHT-TCCEEEECCEETTTTEECHHHHHHHHTTC-
T ss_pred ccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHc-CCceEEEeeeeccCCcCcHHHHHHHHHhC-
Confidence 88 9999999999999995 456799999999999999999888877 99999999854467899999999998632
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEec
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.++. ....++..+.. ..+++++++|
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 244 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS----AGLPALVSNS 244 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEEE
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh----cCCCEEEEec
Confidence 2367888999999999999999999999999999999999999999887763 23345555443 4688999999
Q ss_pred CCcccCCCCceEEEEEe--CCHHHHH-HHHHh-----cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYS--FNDTVVN-CGRKM-----SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHH 334 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~--~~~~i~~-~~~~~-----~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~ 334 (477)
|||.+|++|+|+||+++ .+..+.. ..... ..+..++.++|.+++.++.+..+. +.++++.+++++++++
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ 324 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 3443332 22222 234456789999999999986532 4567888999999999
Q ss_pred HHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++. |+.+..+++|+|+|++++. +.+..+++++||.+.||+ |++++..++
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~~~~~~ 383 (397)
T 3fsl_A 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLNT 383 (397)
T ss_dssp HHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEGGGCCT
T ss_pred HHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEEEecCH
Confidence 999999987 6888888899999998862 245667778899999873 999997788
Q ss_pred HHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAF 423 (477)
Q Consensus 411 e~l~~~l~~l~~~ 423 (477)
+++++++++|+++
T Consensus 384 ~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 384 ANVQRVAKAFAAV 396 (397)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhh
Confidence 8899999999876
No 60
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=5.4e-42 Score=352.69 Aligned_cols=322 Identities=18% Similarity=0.209 Sum_probs=259.1
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH--HHHHHHhcC--C----------CCeEEEcCC
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN--ELIMFCLAN--P----------GDAFLVPSP 143 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al--~~i~~~l~~--~----------Gd~vlv~~P 143 (477)
....|++..|.++||++||++++ +++++|++|+|+++++ ++++.++++ | ||.|++++|
T Consensus 70 ~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p 141 (427)
T 3ppl_A 70 DVRNYGGLDGIVDIRQIWADLLG--------VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP 141 (427)
T ss_dssp BTTSSCCSSCCHHHHHHHHHHHT--------SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred hhcCCCCCCCcHHHHHHHHHHhC--------CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCC
Confidence 35689998999999999999995 6789999999999999 588888876 6 999999999
Q ss_pred CccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCCHHHHHHHHHHH-H
Q 011801 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT-NPSNPLGTTLDRDTLKSLVSFI-N 221 (477)
Q Consensus 144 ~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~~~~l~~l~~~~-~ 221 (477)
+|+.+...++.. |.++++++++.+ .+|+++|+++++ ..++++|+++ +||||||.+++.+++++|+++| +
T Consensus 142 ~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~ 212 (427)
T 3ppl_A 142 GYDRHFSITERF-GFEMISVPMNED---GPDMDAVEELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212 (427)
T ss_dssp CCHHHHHHHHHT-TCEEEEEEEETT---EECHHHHHHHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCS
T ss_pred CcHHHHHHHHHc-CCEEEEeCCCCC---CCCHHHHHHHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhh
Confidence 999999988877 999999999853 389999999884 2378888755 7899999999999999999999 9
Q ss_pred hcCeEEEecccccccccCCCC--cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--cc
Q 011801 222 DKNIHLVCDEIYAATVFSSPK--FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SF 297 (477)
Q Consensus 222 ~~~~~lI~De~y~~~~~~~~~--~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~ 297 (477)
++|++||+||+|+++.|.+.. ..++..+....+ ..+++++++||||. ++||+|+||++++++ +...+.... ..
T Consensus 213 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~ 289 (427)
T 3ppl_A 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAG-NPNRFWAFTSTSKI-TLAGAGVSFFLTSAE-NRKWYTGHAGIRG 289 (427)
T ss_dssp STTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-CTTSEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCcccccCCCCCCccchhhhhhccC-CCCcEEEEechhhc-cCcCccEEEEEcCHH-HHHHHHHHhhccc
Confidence 999999999999987777543 345555421000 45789999999999 679999999999654 444443332 23
Q ss_pred CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----C-CCeEecCCceEEEEeeccchhhccCchHH
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----V-GINCLKSNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
..++++.|.++..++.+.+..++++++.++.++++++.+.+.|.+ . ++.+..+.+|+|+|++++.. . .
T Consensus 290 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~------~ 362 (427)
T 3ppl_A 290 IGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-T------A 362 (427)
T ss_dssp SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-C------H
T ss_pred CCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-h------H
Confidence 447889999999999984333778888899999999988888765 3 57777888999999999853 1 1
Q ss_pred HHHHHHHHHhcCeEEeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 373 IALWRTIVNDVKLNVSP-GSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~p-g~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++.+ .+.++||.++| |..|.. ..++++||+++..+++++++++++|++++++.
T Consensus 363 ~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 363 SRVAE-LAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 24554 45567999999 444542 25789999998778999999999999998753
No 61
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=1e-41 Score=343.06 Aligned_cols=335 Identities=18% Similarity=0.265 Sum_probs=264.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|+++ ++.+.+.+.+.- .....|++ .|..++|+++|++++ +++++|+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNL-------------DCIERYPD-ADYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTG-------------GGGGSCCC-TTCHHHHHHHHHHHT--------SCGGGEE
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHH-------------HHhhcCCC-CCHHHHHHHHHHHHC--------cCHHHEE
Confidence 567899999998764 455666666531 22456866 478999999999996 5678999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++.+++.++ +||.|+++.|+|+++...++.. |.+++.++++..++|.+ ++++.+.+ +.++++|
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~-l~~~~~~~------~~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQL-TDAILEAL------TPDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCC-CTTHHHHC------CTTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHc-CCeEEEEeCCcccccch-hHHHHHhc------cCCCCEE
Confidence 9999999999999998 7899999999999999888877 99999999875445554 34443332 2378899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++.++. ...+ ..+++++++|+||.+|++|+
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~---~~~~----~~~~~i~~~s~sK~~~~~G~ 223 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI---PALK----DNPHIWVLRSLTKFYAIPGL 223 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG---GGCT----TCTTEEEEEESTTTTTCTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchh---hHhc----cCCCEEEEEECchhhcCCcc
Confidence 9999999999999999999999999999999999999998766532222 2222 34678999999999999999
Q ss_pred eEEEEE-eCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 276 RVGIVY-SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~-~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
|+||++ + ++.+.+.++.....+.++.++|.++..+|++.+ ++++.+++++++++.+.+.|+++ |+.+.++ .|
T Consensus 224 r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g 297 (364)
T 1lc5_A 224 RLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLTVYPG-RA 297 (364)
T ss_dssp CCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SS
T ss_pred ceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CC
Confidence 999999 6 555555555554455688999999999998843 47778888999999999999987 8887654 45
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++.. .. ++++.+. ++||.+.||+.|+...++++||+++ ++++++++++.|++++++.
T Consensus 298 ~~~~~~~~~~--~~------~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 298 NYLLLRCERE--DI------DLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp SEEEEEESCT--TC------CHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC---
T ss_pred eEEEEECCCc--HH------HHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhcc
Confidence 7889988741 11 3566666 4599999999987656789999997 6888999999999887654
No 62
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=1.1e-42 Score=367.50 Aligned_cols=356 Identities=18% Similarity=0.295 Sum_probs=276.6
Q ss_pred cccccccccccccHH-HHHHHHHhCCCCcccccccccccccccccC-CCCCcHHHHHHHHHHHhcccCCCCccC-CCcEE
Q 011801 39 GVIQLGLAENQLCFD-LIKDWITKNPYASICTAEGVEVFKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVTFD-PDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~ 115 (477)
++|+|+.+.+..+++ .+.++.... .. ..|+ +..|.+++|+++|+++.+..+..+..+ +++|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~--------------~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~ 168 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGA--------------VA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF 168 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH--------------HT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHH--------------Hh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE
Confidence 478898888776643 344443331 11 2455 667999999999999965423112233 47999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC--CCCcccCHHHHHHHHHHHHHh
Q 011801 116 MGGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI--SNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 116 ~t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~--~~~f~i~~~~l~~~~~~~~~~ 188 (477)
+|+|+++|+.+++.+ ++++||.|+++.|+|+++...++.. |.+++.++++. +++|.+|+++|++++.+
T Consensus 169 ~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---- 243 (533)
T 3f6t_A 169 PTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK-DYELVEVDLHSYEKNDWEIEPNEIEKLKDP---- 243 (533)
T ss_dssp EEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG-GSEEEEECCCEETTTTSEECHHHHHHHSCT----
T ss_pred EECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc-CCeEEEEEecCCcccCCCCCHHHHHHHhCC----
Confidence 999999999999998 7899999999999999998888876 99999888864 56799999999988753
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH-hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN-DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~-~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++.+++++|+++|+ ++|++||+||+|+++.++. .++... ..+++++++|||
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~------~~~~~i~~~S~S 312 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSV------VPYNTMLVYSYS 312 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHH------SGGGEEEEEESH
T ss_pred --CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhc------CCCCEEEEecCc
Confidence 8999999999999999999999999999999 6899999999999876542 444443 347899999999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHH------------------------------------HHh--cccCCCchHHHHH--
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCG------------------------------------RKM--SSFGLVSSQTQYL-- 307 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~------------------------------------~~~--~~~~~vs~~~q~~-- 307 (477)
|.+|++|+|+||++++++.+.+.+ ++. ......+.+.|.+
T Consensus 313 K~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a 392 (533)
T 3f6t_A 313 KLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392 (533)
T ss_dssp HHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHH
T ss_pred ccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 999999999999999776222111 111 1223467778877
Q ss_pred --HHHhcC-C---hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-C--c-------hH
Q 011801 308 --LASMLS-D---DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-T--L-------EG 371 (477)
Q Consensus 308 --~~~~L~-~---~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~--~-------~~ 371 (477)
+...|. + +++ +.++++.+++++++++.+.+.|. .++.+..+++|+|+|++++...... . + ..
T Consensus 393 ~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 393 LFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp HHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 344454 1 223 56788899999999999999998 8888888999999999997532110 0 0 01
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+++..+++++||.+.||+.|+. +++++||+++..+++++++++++|+++++++.
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 235777888889999999999986 47899999998899999999999999998754
No 63
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=3e-41 Score=338.63 Aligned_cols=333 Identities=18% Similarity=0.316 Sum_probs=267.2
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+++++|||+.++|+++ ++.+.+.+.+. +.....|++ .+..++|+++|++++ +++++|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 81 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEG-------------IKNLGVYPD-VNYRRLNKSIENYLK--------LKDIGI 81 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHH-------------HHGGGSCCC-TTCHHHHHHHHHHHT--------CCSCEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHH-------------HHHhcCCCC-ccHHHHHHHHHHHhC--------CCcceE
Confidence 4667999999999885 45555544442 123456754 578999999999996 578999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+++++.++ |+|+++.|+|.++...++.. |.+++.++++.+++ +++++++++++ ++++
T Consensus 82 ~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~~~~l~~~l~-------~~~~ 147 (361)
T 3ftb_A 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKH-GVSVVFSYLDENMC--IDYEDIISKID-------DVDS 147 (361)
T ss_dssp EEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHT-TCEEEEEECCTTSC--CCHHHHHHHTT-------TCSE
T ss_pred EEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHc-CCeEEEeecCcccC--CCHHHHHHhcc-------CCCE
Confidence 99999999999999888 99999999999999988877 99999999886544 45688887764 2789
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.++ .. .+...... ..+++++++|+||.+|++|
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~-~~~~~~~~----~~~~~i~~~s~sK~~~~~G 221 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS-SSFVGEIK----NYSCLFIIRAMTKFFAMPG 221 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT-SSSGGGTT----TCSSEEEEEESSSTTSCGG
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc-cchhHhcc----cCCCEEEEeeChhhcCCCC
Confidence 999999999999999999999999999999999999999987765 22 33333332 4578899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~~ 352 (477)
+|+||++..++.+.+.++.....+.++++.|.++..+|++. +++++.+++++++++.+.+.|+++ ++. +.++.+
T Consensus 222 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 297 (361)
T 3ftb_A 222 IRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHA 297 (361)
T ss_dssp GCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSS
T ss_pred cceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCC
Confidence 99999995566777766666556678999999999999974 347788889999999999999988 777 666554
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.|+|++++. . +..++++.+.++ ||.++||+.|+..+++++|++++ ++++++++++.|+++.+
T Consensus 298 -~~~~~~~~~-~------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 298 -NFVLCRLEN-I------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -SEEEEEESS-S------CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEcCC-C------CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 688998875 1 122566777665 99999999998777899999998 67888888888887764
No 64
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=5.7e-42 Score=350.45 Aligned_cols=344 Identities=13% Similarity=0.173 Sum_probs=268.3
Q ss_pred ccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
.++|+|+.+.. .. +++.+.+.+.+... .....|.+..|.++||+++++++....+ ..+++++|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 106 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATL------------GTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIA 106 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCC------------CSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCc------------cccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCcee
Confidence 46899999874 33 23444455554311 2345788889999999999999853221 112378884
Q ss_pred --EeCChHHHHHHHH---HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 116 --MGGGATGANELIM---FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 116 --~t~G~t~al~~i~---~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.|.|++++++.+. .++.++||.|++++|+|+.+...++.. |.+++.++++..++|.+|+++|++++++. ..
T Consensus 107 ~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~ 182 (409)
T 4eu1_A 107 SCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-GMELTPYSYYDPATKGLNLAGMLECLDKA---PE 182 (409)
T ss_dssp EEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-TCEEEEECCEETTTTEECHHHHHHHHHHS---CT
T ss_pred eeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEEEeecCcCCcCcHHHHHHHHHhC---CC
Confidence 5999999998764 445789999999999999999988877 99999999865568899999999998642 12
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..+++++++||||
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK 258 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD----MVPNLIVAQSFSK 258 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT----TSSCCEEEEECTT
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh----hCCcEEEEecCcc
Confidence 456677799999999999999999999999999999999999998877652 1234444433 4567899999999
Q ss_pred ccCCCCceEEEE--EeCCHH----HHHHHHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIV--YSFNDT----VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHNFT 337 (477)
Q Consensus 269 ~~g~~G~RvG~i--~~~~~~----i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~l~ 337 (477)
.+|++|+|+||+ ++.++. +...+++. .....++.++|.++..+|.+.++. .+++++.+++++++++.+.
T Consensus 259 ~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 259 NFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp TSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 666665 44444432 233446789999999999986532 3447778899999999999
Q ss_pred HHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHH
Q 011801 338 KGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTL 413 (477)
Q Consensus 338 ~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l 413 (477)
+.|++.| +++..+++|+|+|++++. +++..+++++||.+.|| .|++++..+++++
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i 397 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGLNSTNV 397 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEecCHhhH
Confidence 9999987 777788999999987752 35677888889999986 3999988888889
Q ss_pred HHHHHHHHHHH
Q 011801 414 QVALNRIAAFV 424 (477)
Q Consensus 414 ~~~l~~l~~~~ 424 (477)
++++++|++++
T Consensus 398 ~~~~~~l~~~l 408 (409)
T 4eu1_A 398 EYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 65
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=1.1e-41 Score=348.53 Aligned_cols=348 Identities=17% Similarity=0.190 Sum_probs=274.5
Q ss_pred cccccccccc--c----cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE--N----QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~--n----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. + +.+++.+.+.+.+.... ......|.+..|.+++|+++|+++...++ +.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 97 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQE 97 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhC----------hhhccCCCCCCCCHHHHHHHHHHHhcCCC--CccCC
Confidence 5689999887 2 23446666666552100 01245687788999999999999975444 34578
Q ss_pred CcEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMF--CLANPG-----DAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAA 181 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~--~l~~~G-----d~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~ 181 (477)
++|++ |+|+++|+++++. .++++| |.|+++.|+|+++...++.. |.+ ++.++++..++|.+|+++|+++
T Consensus 98 ~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHc-CCceeEEEeeecCCCCccCHHHHHHH
Confidence 99999 9999999999964 456899 99999999999999888877 999 9999986446788999999999
Q ss_pred HHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCCCCc
Q 011801 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCNRDL 259 (477)
Q Consensus 182 ~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~ 259 (477)
+++. +.+++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+.. ..++
T Consensus 177 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~~~ 249 (412)
T 1ajs_A 177 LENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS----EGFE 249 (412)
T ss_dssp HHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCC
T ss_pred HHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc----cCCc
Confidence 8642 3467788899999999999999999999999999999999999999876654 12345544432 3578
Q ss_pred EEEEecCCcccCCCCceEEEEEe---CCHH---HHHHHHH-h-cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHH
Q 011801 260 IHIIYSLSKDMGLPGFRVGIVYS---FNDT---VVNCGRK-M-SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKR 328 (477)
Q Consensus 260 viiv~SlSK~~g~~G~RvG~i~~---~~~~---i~~~~~~-~-~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~ 328 (477)
++++.||||.+|++|+|+||+++ +++. +...+.. . ..+..++.++|.++..+|++.++. ++++++.+++
T Consensus 250 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1ajs_A 250 LFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADR 329 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 89999999999988999999999 5442 3333333 2 234446889999999999886521 4567888999
Q ss_pred HHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 329 LAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 329 l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
++++++.+.+.|++.+ +++..+.+|+|+|++++. +++..+++++||.+.|+ +|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris 388 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPS----------GRIN 388 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTT----------SEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCH-----------HHHHHHHHhCCEEecCC----------cEEE
Confidence 9999999999999886 777788899999987751 35666777889999874 5999
Q ss_pred eccCCHHHHHHHHHHHHHHHhh
Q 011801 405 FANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 405 ~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++..+++++++++++|++++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 389 MCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHH
T ss_pred eeeCCHHHHHHHHHHHHHHHHh
Confidence 9966899999999999999865
No 66
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=2.8e-41 Score=340.95 Aligned_cols=313 Identities=22% Similarity=0.332 Sum_probs=263.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
...|.+..|.++||+++|+++. .+++++|++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 127 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSL-GA 127 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHT-TC
T ss_pred CcCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CC
Confidence 3468888899999999999984 256899999999999999999999999999999999999998888876 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+++.++++.+++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred EEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 99999998767889999999998853 789999999999999999999999999999999999999999998665
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~ 316 (477)
. ++.+..+. .+++++++||||.+|++|+|+||+++ ++.+.+.++....+ ...+.+.|.++...|...
T Consensus 202 ~--~~~~~~~~-------~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 270 (375)
T 3op7_A 202 L--DVPSIIEV-------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY- 270 (375)
T ss_dssp S--CCCCHHHH-------CTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH-
T ss_pred c--CCCchhhh-------cCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc-
Confidence 5 33443332 36788999999999999999999999 55666666554433 235678888888888753
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.++++.+++++++++.+.+.|++. ++.+..+.+|+++|+.++.... ..+++..+++++||.+.||+.|+.
T Consensus 271 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~~g~~~~~ 342 (375)
T 3op7_A 271 --QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMP------MEDFCLQLLQEHGVLLVPGNRFER 342 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSC------HHHHHHHHHHHHCEECEEGGGGTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCC------HHHHHHHHHHhCCEEEeChhhhCC
Confidence 5567888888999999999999986 7888888888888988874321 235778888788999999998874
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++|++++. +++++++++++|++++++.
T Consensus 343 --~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 343 --DGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp --TTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred --CCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 7899999986 6699999999999999764
No 67
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.2e-40 Score=331.04 Aligned_cols=322 Identities=16% Similarity=0.235 Sum_probs=254.1
Q ss_pred CCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 35 QNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.++.++|+|+.|+|+++ ++.+.+.+.+.. .....|++ .|.+++|+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~ 70 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAA-------------ARINRYPF-DAEPRVMRKLAEHFS--------CPEDN 70 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHG-------------GGTTSCCT-THHHHHHHHHHHHHT--------SCGGG
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhh-------------hhhccCCC-CchHHHHHHHHHHhC--------cCHHH
Confidence 45678999999999985 466777666531 23557864 589999999999986 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++.+++.++ +||.|+++.|+|+++...++.. |++++.++++. +|.+|+++++++ .+++
T Consensus 71 i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~--------~~~~ 137 (337)
T 3p1t_A 71 LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVS-GLRHFEIGLTD--DLLLDPNDLAQV--------SRDD 137 (337)
T ss_dssp EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTS-CCEEEEECBCT--TSSBCHHHHTTC--------CTTE
T ss_pred EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHhh--------cCCC
Confidence 999999999999999988 9999999999999999888877 99999999864 578999998765 2678
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
++++++|+||||.+++.+++.+|+ +++++ +|+||+|+++.+.... . .. ..+++++++|+||.+|++
T Consensus 138 ~v~i~~p~nptG~~~~~~~l~~l~---~~~~~-~ivDea~~~~~~~~~~--~----~~----~~~~~i~~~S~sK~~g~~ 203 (337)
T 3p1t_A 138 CVVLANPSNPTGQALSAGELDQLR---QRAGK-LLIDETYVDYSSFRAR--G----LA----YGENELVFRSFSKSYGLA 203 (337)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHH---HHCSE-EEEECTTGGGSSCSSS--C----CC----CBTTEEEEEESSSTTCCT
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHH---HhCCc-EEEECCChhhcccccc--c----cc----cCCCEEEEeeCchhccCc
Confidence 999999999999999977766655 56776 5669999975443321 1 11 346789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+|+||++++++ +...+.+....+.++.+.|.++..+|++.+. +.+..+++.++++.+.+.|+++|+.+.++.++
T Consensus 204 G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 278 (337)
T 3p1t_A 204 GLRLGALFGPSE-LIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGYRVASSEAN 278 (337)
T ss_dssp TTCCEEEECCHH-HHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSS
T ss_pred chheEEEEeCHH-HHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcCEECCCCCe
Confidence 999999999554 5555555555666888999999999988543 34455566777889999999999988777765
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|+..+.. .++ ...+.++||.++||+.|+. ++++|++++ ++++++.+++.|+++.+
T Consensus 279 -~~~~~~~~~---------~~~-~~~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 279 -FVLVENAAG---------ERT-LRFLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -EEEEECTTT---------HHH-HHHHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred -EEEEEcCCH---------HHH-HHHHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 667776531 123 3445677999999998864 689999998 78999999999998764
No 68
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=1.3e-41 Score=345.79 Aligned_cols=344 Identities=16% Similarity=0.196 Sum_probs=266.3
Q ss_pred cccccccccc--cc----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE--NQ----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~--n~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. ++ .+++.+.+.+.+.-. . .....|.+..|.+++|+++|+++....+ ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 92 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE------N-----ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALIND 92 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH------H-----CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcC------c-----ccccCCCCCCCCHHHHHHHHHHHhcCCC--Ccccc
Confidence 4689999887 22 234556666554200 0 0234687888999999999999965332 22468
Q ss_pred CcEEE--eCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|++ |+|+++|+++++.++ ..+||.|+++.|+|+++...++.. |.+++.++++..++|.+|+++|++++++.
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 169 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEA-- 169 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHc-CCceEEEecccCCCCCcCHHHHHHHHHhC--
Confidence 89998 999999999998765 469999999999999999888877 99999999864457889999999988631
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+.. ..+++++++||
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 244 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA----MHKELIVASSY 244 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH----HCSCEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHh----cCCcEEEEEec
Confidence 1246788889999999999999999999999999999999999999876653 12234443332 24688999999
Q ss_pred CcccCCCCceEEEEEe--CCH----HHHHHHHH--hcccCCCchHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FND----TVVNCGRK--MSSFGLVSSQTQYLLASMLSDD----EFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~----~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~----~~~~~~~~~~~~~l~~r~~ 334 (477)
||.+|++|+|+||+++ +++ .+...+.. ...+...+.++|.++..+|++. .+ ++++++.+++++++++
T Consensus 245 sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~ 323 (396)
T 2q7w_A 245 SXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQRMRQ 323 (396)
T ss_dssp TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHHHHHH
T ss_pred cccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999997 333 33333332 2344445889999999999886 22 4567888889999999
Q ss_pred HHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++.| +++..+.+|+|+|++++. +.+..+++++||.+.|| +||+++..++
T Consensus 324 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 382 (396)
T 2q7w_A 324 LFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVAGMTP 382 (396)
T ss_dssp HHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEeecCH
Confidence 9999999987 777788899999998752 24556677789999874 6999986689
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 383 e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 383 DNMAPLCEAIVAVL 396 (396)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
No 69
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=4.9e-41 Score=344.88 Aligned_cols=321 Identities=15% Similarity=0.226 Sum_probs=256.1
Q ss_pred cccc-CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHH--HHHHHhcC--C---------CCeEEEcCCC
Q 011801 79 IAIF-QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANE--LIMFCLAN--P---------GDAFLVPSPY 144 (477)
Q Consensus 79 ~~~Y-~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~--~i~~~l~~--~---------Gd~vlv~~P~ 144 (477)
...| ++..|.++||+++|++++ +++++|++|+|+++++. +++.++++ | ||.|++++|+
T Consensus 62 ~~~Yp~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~ 133 (423)
T 3ez1_A 62 LRNYPGGVAGLPSARALFAGYLD--------VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPG 133 (423)
T ss_dssp TTSSCSCTTCCHHHHHHHHHHTT--------SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESC
T ss_pred hhCCCCCCCChHHHHHHHHHHhC--------CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCC
Confidence 4679 788899999999999985 67899999999999998 88888887 8 5999999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE-eCCCCCcccCCCHHHHHHHHHHH-Hh
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII-TNPSNPLGTTLDRDTLKSLVSFI-ND 222 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii-~nP~NPtG~~~~~~~l~~l~~~~-~~ 222 (477)
|+.+...++.. |.++++++++.+ .+|+++|++++++ +.++++|++ ++||||||.+++.+++++|+++| ++
T Consensus 134 y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 205 (423)
T 3ez1_A 134 YDRHFLLLQTL-GFELLTVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAA 205 (423)
T ss_dssp CHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSS
T ss_pred cHHHHHHHHHc-CCEEEeccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhc
Confidence 99999988887 999999998753 4899999999852 237898865 48999999999999999999999 99
Q ss_pred cCeEEEecccccccccCC---CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--cc
Q 011801 223 KNIHLVCDEIYAATVFSS---PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SF 297 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~~~---~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~ 297 (477)
+|++||+||+|..+.|.. ..+.++..+....+ ..+++++++||||. +++|+|+||++++++ +...+.... ..
T Consensus 206 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~ 282 (423)
T 3ez1_A 206 PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAG-YPDRAFVFASTSKI-TFAGAGLGFVASSED-NIRWLSKYLGAQS 282 (423)
T ss_dssp TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHT-CTTSEEEEEESTTT-SCSSSSCEEEEECHH-HHHHHHHHHHHSC
T ss_pred cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccC-CCCeEEEEeCchhh-ccCCcceEEEEeCHH-HHHHHHHHHhhhc
Confidence 999999999999655544 23445555421100 45789999999999 579999999999665 444444332 22
Q ss_pred CCCchHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC--CeEecCCceEEEEeeccchhhccCc
Q 011801 298 GLVSSQTQYLLASMLSD--DEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG--INCLKSNAGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~--~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g--i~~~~~~~g~~~~~~l~~~~~~~~~ 369 (477)
..++.+.|.++..+|.+ ..+ .+++++.++.++++++.+.+.|.+ .| +.+..+.+|+|+|++++.. .
T Consensus 283 ~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~---- 356 (423)
T 3ez1_A 283 IGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-V---- 356 (423)
T ss_dssp SCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-C----
T ss_pred cCCCHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-c----
Confidence 34788999999999987 544 677888888888888887776654 55 6777888999999999853 1
Q ss_pred hHHHHHHHHHHHhcCeEEeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 370 EGEIALWRTIVNDVKLNVSP-GSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~p-g~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
..++ ...+.++||.++| |+.|.. ..++++||+++..+++++++++++|++++++.
T Consensus 357 --~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 357 --ADRV-VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp --HHHH-HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-HHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1133 4455677999999 666653 24689999998669999999999999998753
No 70
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=8.3e-41 Score=334.42 Aligned_cols=326 Identities=18% Similarity=0.271 Sum_probs=260.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
..+|||+.++|+++ ++.+.+.+.+. +.....|++..+ .++|+++|++++ +++++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 72 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVEN-------------LNCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAILV 72 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHT-------------GGGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHh-------------HhHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 57899999999886 45566666553 124567888777 999999999986 57899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec-cCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC-DISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~-~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++. ||.|+++.|+|..+...++.. |++++.+++ +..+++.+ .++++|
T Consensus 73 t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~----------------~~~~~v 133 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMY-EHEVCFYPSNEDIGEADF----------------SNMDFC 133 (350)
T ss_dssp ESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHT-TCEEEEEETTSCGGGSCC----------------TTCSEE
T ss_pred cCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHc-CCeEEEEecCCccccCcc----------------CCCCEE
Confidence 9999999999999987 999999999999999888877 999999998 64344433 178899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|++.|+++ +||+||+|+++.+.+.... .... ..+++++++||||.+|++|+
T Consensus 134 ~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~---~~~~----~~~~~i~~~S~sK~~~~~G~ 204 (350)
T 3fkd_A 134 WLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP---ADIK----GRKNLVMVYSFSHAYGIPGL 204 (350)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG---GGGT----TCSSEEEEEESHHHHSCGGG
T ss_pred EEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhh---HHhh----cCCCEEEEecCchhccCcch
Confidence 9999999999999999999999988765 9999999998766544321 1222 45788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDE-FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~-~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ + .++.++.. ++++.+.+.|+++ |+.+.++. |
T Consensus 205 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~ 277 (350)
T 3fkd_A 205 RIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQF----TLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-T 277 (350)
T ss_dssp CCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTT----CCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-S
T ss_pred heEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHH----HHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-C
Confidence 9999999 556666666665566689999999999998765 3 22333333 7778899999988 88876655 4
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.|+|++++.. +..++++.+.+++||.++||+.|+...++++||+++ ++++++++++.|++++++++.
T Consensus 278 ~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~~ 344 (350)
T 3fkd_A 278 TFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYEG 344 (350)
T ss_dssp SEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC---
T ss_pred cEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhcc
Confidence 6888888753 123577777775799999999998777899999998 788999999999999987654
No 71
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.3e-41 Score=348.20 Aligned_cols=354 Identities=18% Similarity=0.266 Sum_probs=260.5
Q ss_pred ccccccccccccccHH---HHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 38 GGVIQLGLAENQLCFD---LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
.++|+|+.+.+...+. .+.+.+.+... ++ ........|++..|.++||+++|+++.+.+| +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i 101 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVE------SG-KAADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNI 101 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHH------HT-HHHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhh------CC-cccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccE
Confidence 4789999997766432 33333332100 00 0001234799999999999999999988777 45789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCC-----eEEEc-CCCccchHHHHhhh-----CCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGD-----AFLVP-SPYYAAFDRDLSWR-----TGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd-----~vlv~-~P~y~~~~~~~~~~-----~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
++|+|+++|+++++.+++++|| .|+++ +|+|+++...+... .+..+.+++.+ ..+|.+|+++|+ +.
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-QFKYHVDFEHLH--IG 178 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-EEEEECCGGGCC--CC
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-ccccccCHHHhc--cc
Confidence 9999999999999999999987 89997 99999987654211 14455555532 125778988887 32
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
.++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+.. +.+..+.+... . ..++++++
T Consensus 179 ------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~--~----~~~~~i~~ 245 (417)
T 3g7q_A 179 ------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARP--L----WNPNIILC 245 (417)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCC--C----CCTTEEEE
T ss_pred ------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-ccccccccccc--C----CCCCEEEE
Confidence 37899999999999999999999999999999999999999999853 22211111110 0 34789999
Q ss_pred ecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVE-TSKRLAKRHHNFTKGL 340 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~-~~~~l~~r~~~l~~~L 340 (477)
+|||| ++++|+|+||++++++ +.+.+..... ....+++.|.++..++.+.++ .+++.+ .++.++++++.+.+.|
T Consensus 246 ~s~sK-~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSK-LGLPGSRCGIIIANDK-TITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGG-GTCTTSCCEEEECCHH-HHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred Eechh-ccCCCcceEEEEeCHH-HHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6889999999999554 4444443322 233678999999999998876 444444 6778888888888888
Q ss_pred hhC----CCeEecCCceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCEEEEEeccC
Q 011801 341 EQV----GINCLKSNAGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE-------PGWFRVCFANM 408 (477)
Q Consensus 341 ~~~----gi~~~~~~~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~-------~~~~Rl~~~~~ 408 (477)
.+. |+.+..+.+|+|+|++++. ..+ ..++++.+ .++||.++||+.|.... ++++||+++.
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~- 394 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPIT------TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP- 394 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSSC------HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS-
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCCC------HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecC-
Confidence 763 6888888999999999985 221 22466665 56799999999987543 5799999997
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 011801 409 DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~~ 427 (477)
+++++++++++|++++++.
T Consensus 395 ~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 395 EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764
No 72
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=6.2e-45 Score=370.35 Aligned_cols=353 Identities=19% Similarity=0.251 Sum_probs=282.4
Q ss_pred ccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.+++ +.+.+.+.+... .....|++. ..++|+++++++.+.+| +.+++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAE------------QLVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVF 94 (392)
Confidence 478999999876643 445555444211 123467654 78999999999987766 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++. +++|.+|+++|++++++. ++++|
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v 168 (392)
T 3b1d_A 95 VEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN-NRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLY 168 (392)
Confidence 999999999999999999999999999999999888776 99999998853 345889999999988632 67889
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+..+ ..+++++++||||.+|++|+
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~ 245 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD---FKDFALVLSSATKTFNIAGT 245 (392)
Confidence 999999999999999999999999999999999999999987776555555444220 14778999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc-c--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEecC
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS-F--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~-~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~~ 350 (477)
|+||++++++.+.+.+..... + +.+++++|.++..+|.+. ++++++.+++++++++.+.+.|++ + |+.+..+
T Consensus 246 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (392)
T 3b1d_A 246 KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP 322 (392)
Confidence 999999976655555444332 2 246778899888888753 345778888899999999999987 4 8888889
Q ss_pred CceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 351 NAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 351 ~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+++++|++++.. .+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|+++++
T Consensus 323 ~~~~~~~i~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 323 QGTYLIWLDFSDYGLT------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 9999999998742 11 124667777677999999999976567899999986 78999999999998875
No 73
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=4.7e-41 Score=343.86 Aligned_cols=348 Identities=17% Similarity=0.210 Sum_probs=267.6
Q ss_pred cccccccccc----c--cccHHHHHHHHHh-CCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVIQLGLAE----N--QLCFDLIKDWITK-NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i~l~~~~----n--~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++|+|+.+. | ..+++.+.+.+.+ .-.. .....|++..|.+++|+++|+++...+| +.++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 4679998875 2 1344556666554 3210 1234687888999999999999976544 4457
Q ss_pred CCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVM--GGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~--t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
+++|++ |+|+++|+++++ ..++.+||.|++++|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKA- 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHHHS-
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHc-CceEEEEeeecCCCCccCHHHHHHHHHhC-
Confidence 899999 999999999984 444579999999999999999988877 99999999822246889999999998652
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCCCC--cEEE
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCNRD--LIHI 262 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~--~vii 262 (477)
..+..++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+... ..+ ++++
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 248 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK---LSTVSPVFV 248 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH---TTTTCCEEE
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc---CCCCcceEE
Confidence 1123455559999999999999999999999999999999999999876654 122344443321 222 7999
Q ss_pred EecCCcccCCCCceEEEEE--e----CCHH----HHHHHHH-h-cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVY--S----FNDT----VVNCGRK-M-SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSK 327 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~--~----~~~~----i~~~~~~-~-~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~ 327 (477)
++||||.+|++|+|+||++ + .++. +...+.. . ..+...+.+.|.++..+|++.++. ++++++.++
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999998899999998 6 2443 4444443 2 234445789999999999887521 457888899
Q ss_pred HHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 328 RLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
+++++++.+.+.|++.+ +++..+.+|+|+|++++. +.+..+++++||.+.| ++||
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~----------~~Ri 387 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA----------SGRA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT----------TSEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc----------CcEE
Confidence 99999999999999876 888888899999987652 1236677778999986 3799
Q ss_pred EeccCCHHHHHHHHHHHHHHHhh
Q 011801 404 CFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 404 ~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+++..+++++++++++|+++++.
T Consensus 388 s~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 388 SIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEccCCHhHHHHHHHHHHHHHHh
Confidence 99866899999999999998864
No 74
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=1.5e-40 Score=344.27 Aligned_cols=318 Identities=16% Similarity=0.193 Sum_probs=255.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE--eCChHHHHHH--HHHHhcCCCCeEEEcCCCccchHHHHh-
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM--GGGATGANEL--IMFCLANPGDAFLVPSPYYAAFDRDLS- 153 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~--t~G~t~al~~--i~~~l~~~Gd~vlv~~P~y~~~~~~~~- 153 (477)
...|.+..|.+++|+++++++..... ..+++++|++ |+|+++|+++ .+.+++.+||.|++++|+|+.+...++
T Consensus 87 ~~~Y~~~~G~~~lr~~ia~~l~g~~~--~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~ 164 (448)
T 3meb_A 87 NKEYPPVAGFPLFLEAAQFLMFGKDS--KAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDK 164 (448)
T ss_dssp CCSCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHhcCCCc--cccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHh
Confidence 35788888999999999999831100 0123689999 9999999988 455678899999999999999998888
Q ss_pred ---hhCCcEEEEEeccCCC-CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 154 ---WRTGVQIVPVHCDISN-NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 154 ---~~~g~~~~~v~~~~~~-~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
.. |.+++.+++...+ +|.+|+++|++++++. ..+.+++++++||||||.+++.+++++|+++|+++|+++|+
T Consensus 165 ~~~~~-G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~ 240 (448)
T 3meb_A 165 VFNKL-KVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFF 240 (448)
T ss_dssp HHCTT-TSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hHHhC-CCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 76 9999999984344 6899999999998752 22577889999999999999999999999999999999999
Q ss_pred cccccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEE--Ee--------CCH----HHHHHHHH
Q 011801 230 DEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV--YS--------FND----TVVNCGRK 293 (477)
Q Consensus 230 De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i--~~--------~~~----~i~~~~~~ 293 (477)
||+|.++.+++. ...++..+.. ..+++++++||||.||++|+|+||+ ++ +++ .+...+.+
T Consensus 241 Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 241 DSAYQGFATGSFEADAFAVRMFVD----AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp EESCTTTSSSCHHHHTHHHHHHHH----TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred ecccccccCCCcccCchhHHHHhh----cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 999998776541 2234444433 4578899999999999999999998 66 454 34444433
Q ss_pred h--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHHHHHHHhhCC---------CeEecCCceEEEEee
Q 011801 294 M--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHNFTKGLEQVG---------INCLKSNAGLFFWMD 359 (477)
Q Consensus 294 ~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~l~~~L~~~g---------i~~~~~~~g~~~~~~ 359 (477)
. ..+..++.+.|.+++.+|.+.++. .+++++.+++++++++.+.+.|++.| +.+..+++|+|+|++
T Consensus 317 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 396 (448)
T 3meb_A 317 QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTG 396 (448)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECC
T ss_pred HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecC
Confidence 2 334457789999999999987542 24478888999999999999999873 555678899999998
Q ss_pred ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 360 l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++. +++..+++++||.+.||+ + ||+++..+++++++++++|++++++
T Consensus 397 ~~~-----------~~~~~ll~~~gV~v~~G~-------g--Ris~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 397 LTP-----------EHVDYLKEKWSIYLVKAG-------G--RMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCH-----------HHHHHHHHHHCEEECSGG-------G--EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CCH-----------HHHHHHHHhCCEEEeCCC-------c--EEEEecCCHHHHHHHHHHHHHHHHh
Confidence 852 466778888899999985 2 9999987888899999999999974
No 75
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=1.7e-41 Score=345.29 Aligned_cols=347 Identities=17% Similarity=0.240 Sum_probs=250.6
Q ss_pred hhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCc-----HHHHHHHHH
Q 011801 23 WKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGL-----PEFRQAVAK 97 (477)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~-----~~lr~aia~ 97 (477)
-++|+.-|.....+..++|+|+.+++..+.+ +++...-..... .........|++..|. ++||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~---~~~~~~~~~~~~----~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~ 79 (391)
T 3bwn_A 7 SRKPEKISNKNIPMSDFVVNLDHGDPTAYEE---YWRKMGDRCTVT----IRGCDLMSYFSDMTNLCWFLEPELEDAIKD 79 (391)
T ss_dssp -----------CCTTTSCEECSSCCCGGGHH---HHHHTGGGSCEE----ECTTTTCSSCSCTTSSSTTSCHHHHHHHHH
T ss_pred ccCccccCCCCccCCCCeeEcCCCCCCCCCC---HHHHHhHHHHhh----cCccchhhcCCCCCCcccccCHHHHHHHHH
Confidence 4567777766555677899999998765543 333332100000 0001134579999998 999999999
Q ss_pred HHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc
Q 011801 98 FMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGD----AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK 172 (477)
Q Consensus 98 ~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l~~~Gd----~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~ 172 (477)
|++ .+| +.+++ ++|++|+|+++++.+++.+|+++|| .|++++|+|+.|...++.. |+++++++++.+ ++.
T Consensus 80 ~~~-~~g--~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~d~~-~l~ 154 (391)
T 3bwn_A 80 LHG-VVG--NAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV-RSGMYKWEGDAW-GFD 154 (391)
T ss_dssp HHH-HHC--SBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTT-CBTTEEEEEEST-TCC
T ss_pred HHH-hcC--CCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHc-CCeEEEecCCHH-HcC
Confidence 998 455 55666 5999999999999999999999999 9999999999999988877 999998888642 332
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
..++|+|+++|||||||.+++ +|++.+.+++++||+||+|.+ . .+.++..
T Consensus 155 ----------------~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~--~~~~l~~---- 204 (391)
T 3bwn_A 155 ----------------KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---P--HYTPITR---- 204 (391)
T ss_dssp ----------------CCSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---T--TTSCCCC----
T ss_pred ----------------CCCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---C--CCCcccc----
Confidence 027899999999999999997 344422233499999999972 1 1122211
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChh-h------HHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDE-F------VDNFLV 323 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~-~------~~~~~~ 323 (477)
..+++++++||||.+|+||+|+||+++.++.+.+.+.+... .+.++.+.|.++..+|++.. + .+.+++
T Consensus 205 ---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 281 (391)
T 3bwn_A 205 ---RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFK 281 (391)
T ss_dssp ---CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHH
T ss_pred ---CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHH
Confidence 24788999999999999999999999855555555554433 35688999999999998642 1 145688
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeEec-------------CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC
Q 011801 324 ETSKRLAKRHHNFTKGLEQV-GINCLK-------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP 389 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~-gi~~~~-------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p 389 (477)
+.++.++++++.+.+.|++. |+.+.. +.+|+|+|++++.. +.+..+++++||.++|
T Consensus 282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v~p 351 (391)
T 3bwn_A 282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMSRA 351 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEEcc
Confidence 88999999999999999987 555543 34567999999741 1344566778999999
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 390 GSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 390 g~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+.|+. .++++|||++. +++++++++++|++++++
T Consensus 352 g~~fg~-~~~~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 352 GERCGS-DKKHVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp GGGGTC-CTTEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred CCCCCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999975 57899999996 899999999999988754
No 76
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=1.7e-39 Score=327.48 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=261.9
Q ss_pred cccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 40 VIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 40 ~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.|||+.++|+++ ++.+.+.+.+.-+. . ......|++..+ .++|+++|+++.+.+| +.+++++|++|+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~ 99 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDK-----I----ATELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAAN 99 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHH-----H----GGGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEES
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHh-----c----ccccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECC
Confidence 399999999774 35566655542100 0 012456877666 8999999999988766 346788999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~ 198 (477)
|+++++++++.++.++||.|++++|+|+++...++.. |.+++.++.+ ++|.+|++++++++++. ++++|+++
T Consensus 100 G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~ 171 (369)
T 3cq5_A 100 GSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGT-HTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVT 171 (369)
T ss_dssp HHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHT-TCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999999888876 9999999965 46789999999998753 68899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCC-cEEEEecCCcccCCCCceE
Q 011801 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 199 nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~-~viiv~SlSK~~g~~G~Rv 277 (477)
+|+||||.+++.+++.+|++. +++++|+||+|+++.+. .+.....+ ..+ ++++++|+||.+|++|+|+
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~---~~~~li~De~~~~~~~~----~~~~~~~~----~~~~~~i~~~s~sK~~~~~G~r~ 240 (369)
T 3cq5_A 172 TPNNPTGDVTSLDDVERIINV---APGIVIVDEAYAEFSPS----PSATTLLE----KYPTKLVVSRTMSKAFDFAGGRL 240 (369)
T ss_dssp SSCTTTCCCCCHHHHHHHHHH---CSSEEEEECTTGGGCCS----CCGGGGTT----TCTTTEEEEEESSSTTSCGGGCC
T ss_pred CCCCCCCCCCCHHHHHHHHHh---CCCEEEEECCchhhcCC----cchHHHHh----hCCCCEEEEEechHhcCCcccce
Confidence 999999999997777777764 45999999999976543 22222322 335 8899999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++ +.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+++.++ .|+|+|
T Consensus 241 G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~ 314 (369)
T 3cq5_A 241 GYFVANPA-FIDAVMLVRLPYHLSALSQAAAIVALRHSA----DTLGTVEKLSVERVRVAARLEELGYAVVPS-ESNFVF 314 (369)
T ss_dssp EEEEECTH-HHHHHHTTSCTTCSCHHHHHHHHHHHHTHH----HHHTHHHHHHHHHHHHHHHHHHHTCEEECC-SSSEEE
T ss_pred EEEEeCHH-HHHHHHHcCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCC-CCeEEE
Confidence 99999765 445555444444588899999999998743 467778889999999999998889888754 457899
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++++. + ..++++.+ .++||.+.||. .++++|++++ +++++++++++|+++++.
T Consensus 315 ~~~~~--~------~~~l~~~l-~~~gi~v~~~~-----~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 315 FGDFS--D------QHAAWQAF-LDRGVLIRDVG-----IAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp EECCS--S------HHHHHHHH-HHTTEECBCCS-----CTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred EECCC--C------HHHHHHHH-HHCCEEEEECC-----CCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 98861 1 12466666 46799999981 3679999998 789999999999998754
No 77
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1e-40 Score=344.60 Aligned_cols=364 Identities=18% Similarity=0.242 Sum_probs=270.2
Q ss_pred cccc-ccccccccccHHHHHH---HHHhCCCCccccccccc-c--cccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVI-QLGLAENQLCFDLIKD---WITKNPYASICTAEGVE-V--FKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i-~l~~~~n~~~~~~i~~---~~~~~~~~~~~~~~~~~-~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++| +|+.+.+..+++..+. .+.+.-.. ..+|-. . ......|++..|.+++|+++|+|+.+.+| +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGND---NDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYD--WNLT 105 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSC---SCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhc---cccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCC
Confidence 4689 9999876665443333 33321000 000000 0 01235799999999999999999988777 4578
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--------------eEEEc-CCCccchHHH------HhhhCCcEEEEEeccCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGD--------------AFLVP-SPYYAAFDRD------LSWRTGVQIVPVHCDISN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd--------------~vlv~-~P~y~~~~~~------~~~~~g~~~~~v~~~~~~ 169 (477)
+++|++|+|+++|+.+++.+++++|| .|+++ +|+|+.+... +... |..+++++++.++
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAV-LPHIDEVTHDGEE 184 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEEC-CCEEEEEEETTEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhcc-CceEEeccccccc
Confidence 99999999999999999999999998 78876 9999988763 2333 8888888887422
Q ss_pred ---CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 170 ---NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 170 ---~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
+|.+|+++|++++++. ..++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+.. +....+...
T Consensus 185 g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~ 260 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDA 260 (444)
T ss_dssp EEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCC
T ss_pred CccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccc
Confidence 4789999999886432 237899999999999999999999999999999999999999999853 222111111
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
.. . ..+++++++||||. +++|+|+||++++++ +...+.... .....+++.|.++..++.+.++ ..+..+
T Consensus 261 ~~--~----~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 331 (444)
T 3if2_A 261 HL--N----WDNNTILCFSLSKI-GLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQLSDN 331 (444)
T ss_dssp CC--C----CCTTEEEEEESTTT-TCGGGCCEEEECCHH-HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHHHH
T ss_pred cc--c----CCCCEEEEechhhc-cCCCCceEEEEECHH-HHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hHHHHH
Confidence 10 1 35789999999997 789999999999554 444443332 2234778999999999998776 444444
Q ss_pred -HHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-
Q 011801 325 -TSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE- 397 (477)
Q Consensus 325 -~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~- 397 (477)
.++.++++++.+.+.|.+. ++.+..+.+|+|+|++++. ..+ ..+++..+ .++||.++||+.|....
T Consensus 332 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~~~~~~~ 404 (444)
T 3if2_A 332 EIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIS------TLDLYERL-KAKGTLIVPSEYFFPGVD 404 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSC------HHHHHHHH-HHTTEECEEGGGSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCC------HHHHHHHH-HHCCeEEecchhhcCCCC
Confidence 6778888888888877653 5677778899999999984 221 22466655 56799999999986432
Q ss_pred -------CCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 398 -------PGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 398 -------~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++||+++. +++++++++++|++++++..
T Consensus 405 ~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 405 VSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp CTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHH
Confidence 2689999997 99999999999999987643
No 78
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=1.3e-40 Score=338.18 Aligned_cols=341 Identities=14% Similarity=0.170 Sum_probs=263.6
Q ss_pred ccccccccccc----c--ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN----Q--LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n----~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+.. . .+++.+.+.+.+... . .....|++..|.+++|+++|+++... ..++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~y~~~~g~~~lr~~la~~~~~~-----~~~~ 89 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE------T-----ETTKTYAGLSGEPEFQKAMGELILGD-----GLKS 89 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH------H-----CCCCCCCCSSCCHHHHHHHHHHHHGG-----GCCG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcC------C-----cccCCCCCCCCcHHHHHHHHHHHhCC-----CCCc
Confidence 46799998872 2 334666666654210 0 12457888889999999999998421 2368
Q ss_pred CcEEE--eCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|++ |+|+++|+++++..+.. +||.|+++.|+|+++...++.. |.+++.++++..+++.+|++++++++++.
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 166 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA-- 166 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC--
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCceEEEecccccCCccCHHHHHHHHHhC--
Confidence 89999 99999999999987754 9999999999999999888877 99999999865457889999999988641
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC-CcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..+++++++||
T Consensus 167 -~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 241 (394)
T 2ay1_A 167 -KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS----RIPEVLIAASC 241 (394)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH----HCSSEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh----cCCCEEEEEec
Confidence 12456778899999999999999999999999999999999999998665421 2233433322 23678999999
Q ss_pred CcccCCCCceEEEEEe--CCHHH----HHHHHH--hcccCCCchHHHHHHHHhcCChhh---HHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FNDTV----VNCGRK--MSSFGLVSSQTQYLLASMLSDDEF---VDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~~i----~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~---~~~~~~~~~~~l~~r~~~ 335 (477)
||.+|++|+|+||+++ +++.+ ...+.. ...+...++++|.++..+|++.++ .++++++.+++++++++.
T Consensus 242 sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (394)
T 2ay1_A 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 44432 222221 233444588999999999987621 145678888999999999
Q ss_pred HHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+.+.|++.+ +++..+.+|+|+|++++. +.+..+++++||.+.|| +|++++..+++
T Consensus 322 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~ 380 (394)
T 2ay1_A 322 LAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINIAGLNDN 380 (394)
T ss_dssp HHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEeecCCHh
Confidence 999998875 777778889999998762 23456667789999875 59999866899
Q ss_pred HHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAF 423 (477)
Q Consensus 412 ~l~~~l~~l~~~ 423 (477)
++++++++|+++
T Consensus 381 ~i~~~~~~l~~~ 392 (394)
T 2ay1_A 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 999999999875
No 79
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=2.3e-39 Score=325.31 Aligned_cols=329 Identities=18% Similarity=0.289 Sum_probs=256.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.++|+++ ++.+.+.+.+.-.. .+ .....|++. +..++|+++|++++ +++++|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~----~~~~~y~~~-~~~~lr~~la~~~g--------~~~~~i~ 86 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGP-----DG----AALRIYPSA-SSQKLREVAGELYG--------FDPSWII 86 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTT-----TC----GGGGSCCCS-SCHHHHHHHHHHHT--------CCGGGEE
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhc-----cc----chhhcCCCC-chHHHHHHHHHHhC--------cCcceEE
Confidence 457999999999885 45566666552110 00 014567665 56999999999996 5788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|+++.|+|.++...++.. |.+++.++++. ++.+ ++++++ .+++++
T Consensus 87 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~--~~l~~~--------~~~~~v 153 (360)
T 3hdo_A 87 MANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQ-GARVRTFGLTG--DFRI--AGFPER--------YEGKVF 153 (360)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHH-TCEEEEECBCT--TSSB--TTCCSS--------BCSSEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHC-CCEEEEeeCCC--CCCH--HHHHhh--------cCCCEE
Confidence 9999999999999999999999999999999999988887 99999999864 3555 444322 256799
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++. ++|+++|+++|+||+|+++ .+....+. .. ..+++++++|+||.+|++|+
T Consensus 154 ~i~~p~nptG~~~~~~~l~---~l~~~~~~~li~De~~~~~--~~~~~~~~---~~----~~~~~i~~~s~sK~~g~~G~ 221 (360)
T 3hdo_A 154 FLTTPNAPLGPSFPLEYID---ELARRCAGMLVLDETYAEF--AESNALEL---VR----RHENVVVTRTLSKSYSLAGM 221 (360)
T ss_dssp EEESSCTTTCCCCCHHHHH---HHHHHBSSEEEEECTTGGG--SSCCCTHH---HH----HCSSEEEEEESTTTTSCTTS
T ss_pred EEeCCCCCCCCCcCHHHHH---HHHHHCCCEEEEECChHhh--CCcchhHH---hc----cCCCEEEEecchHhhcCCcc
Confidence 9999999999999966554 5556889999999999974 33333332 22 34788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+.+.++. |.|
T Consensus 222 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~ 295 (360)
T 3hdo_A 222 RIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIRETREWFTTELRSIGYDVIPSQ-GNY 295 (360)
T ss_dssp CCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCS-SSE
T ss_pred ceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEcCCC-ccE
Confidence 9999999 555666665555556689999999999998744 4677888899999999999999998877655 468
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|++++.. + ..++.+.+. ++||.++||+. ...++++|++++ +++++++++++|+++.+.
T Consensus 296 ~~~~~~~~-~------~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 296 LFATPPDR-D------GKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG--TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp EEEECTTC-C------HHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred EEEECCCC-C------HHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence 89887631 1 224666554 56999999876 334689999998 899999999999998865
No 80
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=3.7e-40 Score=336.75 Aligned_cols=344 Identities=14% Similarity=0.123 Sum_probs=255.9
Q ss_pred cccccccc------ccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 40 VIQLGLAE------NQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 40 ~i~l~~~~------n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.||||++. ++..++-++++.+...+. .....|.+..|+++||+++++++... ........
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-----------~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~ 111 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-----------NLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLV 111 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEE
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-----------CCCCCCCCcCChHHHHHHHHHHhcCC---Cccccccc
Confidence 58999872 222345566654331110 11235999999999999999997532 11222233
Q ss_pred EEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 114 IVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+-|.|+|+|+..++..+ .+|||.|++++|+|+.|...++.. |.+ +..++....+++.+|.+.+.+.+++.
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a-G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~--- 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA-GWKNICTYAYYDPKTVSLNFEGMKKDILAA--- 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT-TCCCEEEEECEEGGGTEECHHHHHHHHHHS---
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc-CCeEEEeeccccccccCCCHHHHHHHHhcc---
Confidence 455889998887766554 579999999999999999998887 886 44555555567889999998888653
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc--cHHHhhhhccCCCCcEEEEecC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT--SVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~--s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+.+++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++.... .+....+ ..++++++.||
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 263 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR----RGIEVLLAQSF 263 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCCEEEEEC
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh----hCceEEEEecc
Confidence 34677888899999999999999999999999999999999999999877653221 2222222 45778999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHH------H--HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCG------R--KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~------~--~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~ 335 (477)
||.|+++|+|+||++++.+...... . ....+...+...|.+++..|.++.+. ++.++..+++++++|+.
T Consensus 264 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~ 343 (420)
T 4h51_A 264 SKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRT 343 (420)
T ss_dssp TTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654332211 1 12344557778999999999987643 44567778999999999
Q ss_pred HHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
|.+.|++.| +.+..+++|+|.|+.+.. +.++ +|+++||.+.||+ |||+++++++
T Consensus 344 l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ 401 (420)
T 4h51_A 344 VYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCE-YCQNHNIFITVSG----------RANMAGLTHE 401 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHH-HHHHTTEECCTTC----------EEEGGGCCHH
T ss_pred HHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHH-HHHhCCEEEcCCC----------EEEeccCCHH
Confidence 999999986 344567889999987763 1233 4567899988762 9999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 011801 412 TLQVALNRIAAFVQQD 427 (477)
Q Consensus 412 ~l~~~l~~l~~~~~~~ 427 (477)
+++.+.++|.+++++.
T Consensus 402 ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 402 TALMLAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999763
No 81
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=6.1e-39 Score=319.19 Aligned_cols=322 Identities=16% Similarity=0.267 Sum_probs=250.4
Q ss_pred CCCCCCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 31 FHPTQNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
|.+...+.++|+|+.++|+++ ++.+.+.+.+.-.. .....|++. +..++|+++|+++++. .+
T Consensus 12 ~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~~ 74 (335)
T 1uu1_A 12 YPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIYYDS-PDEELIEKILSYLDTD-----FL 74 (335)
T ss_dssp CCCCCCCCCSEEESSCCCSSCCCHHHHHHHHHTCCG-----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----SC
T ss_pred CCCCCCCCcceECCCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-chHHHHHHHHHHcCCC-----CC
Confidence 333333457899999999764 56667766664210 124567664 6899999999999753 25
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++++|++|+|+++++.+++.++ ||.|+++ |+|+++...++.. |.+++.++++ ++|.+|++++ +
T Consensus 75 ~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l-----~----- 137 (335)
T 1uu1_A 75 SKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAV-GAKFLEVPLT--KDLRIPEVNV-----G----- 137 (335)
T ss_dssp CGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHH-TCEEEECCCC--TTSCCCCCCC-----C-----
T ss_pred CHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHc-CCeEEEeccC--CCCCCCHHHc-----C-----
Confidence 6889999999999999999988 8999999 9999999888877 9999999875 3567887776 1
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
++++|++++|+||||.+++.+++++|+++| | ++|+||+|+++.+. ++.+ ..+ ..+++++++||||.
T Consensus 138 -~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~---~~~----~~~~~i~~~s~sK~ 203 (335)
T 1uu1_A 138 -EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHGE--SYVD---FLK----KYENLAVIRTFSKA 203 (335)
T ss_dssp -TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGG---GGG----TCSSEEEEEESTTT
T ss_pred -CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch--hHHH---Hhh----hCCCEEEEecchhh
Confidence 788999999999999999999999998877 7 89999999975432 2222 222 34678999999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
+|++|+|+||+++ ++.+.+.++.....+.++.++|.++.++|++.+ ++++.+++++++++.+.+.|++.|+.+.+
T Consensus 204 ~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 278 (335)
T 1uu1_A 204 FSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITD 278 (335)
T ss_dssp TTCGGGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred cCCcccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCcEEcC
Confidence 9999999999999 455555555544445688999999999998743 36677788889999999999888887654
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
.+|+|+|++++. . +..++++.+.+ +||.++|+ ++++|++++ +++++++++++|+++
T Consensus 279 -~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~~-------~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 279 -SRGNFVFVFMEK-E------EKERLLEHLRT-KNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp -CCSSEEEEECCT-H------HHHHHHHHHHH-HTEEEEEE-------TTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred -CCCeEEEEECCC-C------CHHHHHHHHHH-CCEEEEEC-------CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 456799999874 1 12256666664 59999982 578999997 568899999998764
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.4e-35 Score=301.76 Aligned_cols=343 Identities=15% Similarity=0.080 Sum_probs=256.4
Q ss_pred CCccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 36 NPGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 36 ~~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
+..++|+|+.+++ .+ +++.+.+.+.+.-. +. ......|++..|.+++++++++++.+..| .++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~------~~---~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~ 105 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALE------KY---GTGCAGSRFLNGTLDIHVELEEKLSAYVG------KEA 105 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHH------HH---CSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHH------Hc---CCCCCCcCcccCCcHHHHHHHHHHHHHhC------CCc
Confidence 3567899999977 44 44555555544210 00 01123466667888999999998887765 368
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+++|+|+++|+.+++.++.++||.|+++.|+|+.+...++.. |.+++.+++ +|+++|++++++... .+++
T Consensus 106 v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~-g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~ 175 (398)
T 3a2b_A 106 AILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLS-FSKVIKYGH-------NNMEDLRAKLSRLPE--DSAK 175 (398)
T ss_dssp EEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHS-SSEEEEECT-------TCHHHHHHHHHTSCS--SSCE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHc-CCceEEeCC-------CCHHHHHHHHHhhcc--CCce
Confidence 999999999999999999999999999999999999888876 999999885 478999988864210 1688
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc-EEEEecCCcccCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL-IHIIYSLSKDMGL 272 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-viiv~SlSK~~g~ 272 (477)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.|+.. ..++.+... ..++ +++++||||.+|+
T Consensus 176 ~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~----~~~~~di~~~s~sK~~~~ 247 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK-GAGTASHFG----LNDDVDLIMGTFSKSLAS 247 (398)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG-GCCHHHHHT----CGGGCSEEEEESSSTTCS
T ss_pred EEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC-CCchHhhcC----CCcCCeEEEecccccccC
Confidence 9999999999999998 88899999999999999999987656422 133333221 1234 5899999999997
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-c--ccCCCchHHHHH-HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKM-S--SFGLVSSQTQYL-LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~-~--~~~~vs~~~q~~-~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
+| ||++++++ +.+.+... . .....+++.|.+ +..+|+.. +++++.+++++++++.+.+.|++.|+++.
T Consensus 248 ~G---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 319 (398)
T 3a2b_A 248 LG---GFVAGDAD-VIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGFDLG 319 (398)
T ss_dssp SC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CC---cEEEeCHH-HHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 78 99999654 44444332 1 223355566764 45666542 23567788899999999999999898877
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+. |+|+|+.++... ...++++.++++ ||.+.||+.|... .++++||+++. .+++++++++++|++++++
T Consensus 320 ~~~-g~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 320 ATE-SPILPIFIRSNE------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp SCC-SSEEEEECCCHH------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEEcCCHH------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 665 589999997432 123577777766 9999999988642 35799999986 4999999999999999876
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
.
T Consensus 392 ~ 392 (398)
T 3a2b_A 392 A 392 (398)
T ss_dssp C
T ss_pred h
Confidence 3
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.3e-33 Score=286.54 Aligned_cols=345 Identities=15% Similarity=0.096 Sum_probs=244.5
Q ss_pred Ccccccccccccccc---HHHHHHHHHhCCCCcccccccccccccccc--cCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 37 PGGVIQLGLAENQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAI--FQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
...+|||+.+ |+++ ++.+.+.+.+.-.. -+.. ..... |+...+..+++++++++++ . +
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~-----~~~~--~~~~~~~~g~~~~~~~l~~~la~~~~--------~-~ 104 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQ-----YGFG--MASVRFICGTQTIHKELEKDISEFLG--------T-D 104 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHH-----HCSC--CCSCCCCCCCBHHHHHHHHHHHHHHT--------C-S
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHH-----hCCC--CCCcCccccCchHHHHHHHHHHHHHC--------C-C
Confidence 4568999988 5544 35555544432100 0000 00111 2233347899999999986 1 3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
+.|++++| ++|+..++.+++++||.|+++.|+|+.+...++.. |.++++++. +|+++|++++++....+.+
T Consensus 105 ~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 105 DTILYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRLC-KAQRYRYKN-------NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSC-CSEEEEECT-------TCTTHHHHHHHHHHTTTCS
T ss_pred cEEEECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCceeEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 45666655 77999999999999999999999999999888876 999998885 3678899999876544457
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
+++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...+.. ...+..+... ...+.+++++|+||.+|
T Consensus 176 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~---~~~~~di~~~s~sK~~~ 248 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE-NGRGTPEYCG---VADRVDILTGTLGKALG 248 (399)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-TSCCHHHHHT---CTTCCSEEEEESSSSSC
T ss_pred ceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC-CCCchHHhhC---CCCCCcEEEecchHhcc
Confidence 999999999999999999 8899999999999999999996332332 2233333321 11255688999999998
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
|++.||++++++.+.........+ +..+...+.++...++.. ..+.++.+++++++++++.+.|++.|+++.
T Consensus 249 --g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 323 (399)
T 3tqx_A 249 --GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKLGFQLV 323 (399)
T ss_dssp --SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred --cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 344599999665443333222222 235556666666665432 244677888999999999999999998887
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++.+ .|+|+.++... ...++++.+++ +||.+.|+..+. ..+++++|++++. .+++++++++++|++++++
T Consensus 324 ~~~~-~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 324 PGNH-PIIPVMLGDAQ------LATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp CCSS-SEEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CEEEEEeCCHH------HHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 5554 67888887532 22357777776 599999875443 3345799999973 4999999999999999976
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
.
T Consensus 396 ~ 396 (399)
T 3tqx_A 396 L 396 (399)
T ss_dssp T
T ss_pred h
Confidence 3
No 84
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.6e-33 Score=286.60 Aligned_cols=341 Identities=16% Similarity=0.103 Sum_probs=244.4
Q ss_pred CCcccccccccccccc---HHHHHHHHHhCCCCcccccccccccccccccC--CCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAENQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAIFQ--DYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+|||+.+ |+++ ++.+.+.+.+.-.. -+. ......|+ ...+..++|+++|++++ .+
T Consensus 43 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~-----~~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~ 106 (401)
T 1fc4_A 43 DGSHVINFCAN-NYLGLANHPDLIAAAKAGMDS-----HGF--GMASVRFICGTQDSHKELEQKLAAFLG--------ME 106 (401)
T ss_dssp TSCEEEECCCS-CTTSCTTCHHHHHHHHHHHHH-----HCS--CCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS
T ss_pred CCccEEEeecc-CcccccCCHHHHHHHHHHHHH-----hCC--CCCCCCcccCCcHHHHHHHHHHHHHhC--------CC
Confidence 45678999988 6664 45555555442100 000 00011232 23467899999999996 33
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
+.|++++| ++++..++.++.++||.|+++.|+|+.+...++.. |++++.++. +|+++|++++++..+.+.
T Consensus 107 -~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~ 176 (401)
T 1fc4_A 107 -DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMQELEARLKEAREAGA 176 (401)
T ss_dssp -EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT-------TCHHHHHHHHHHHHHTTC
T ss_pred -cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHc-CCceEEECC-------CCHHHHHHHHHHhhccCC
Confidence 56666655 67999999999999999999999998888877766 999988873 378999999876543334
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-cccc-CCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVF-SSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~-~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ .+..+.+...+ .++.+++++||||
T Consensus 177 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~------~~~~di~~~s~sK 247 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV------MGRVDIITGTLGK 247 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC------TTCCSEEEEESSS
T ss_pred CceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC------CcCCcEEEecchh
Confidence 6899999999999999999 8889999999999999999996 6542 23332221111 2345688999999
Q ss_pred cc-CCCCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 269 DM-GLPGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 269 ~~-g~~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+ |.+| ||+++++ .+.+.+.... .+ +.++.+.|.++...|+..+ . .++.+++++++++++.+.|++.
T Consensus 248 ~~~~~~g---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 248 ALGGASG---GYTAARK-EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE---A-GSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp TTCSSSC---EEEEECH-HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCC---EEEEcCH-HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHHc
Confidence 99 6554 9999954 4444444322 12 2467788888877775422 1 3556778888999999999998
Q ss_pred CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHH
Q 011801 344 GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~ 421 (477)
|+++.+ ..|+|+|++++... ...++++.+.++ ||.+.||..|+.. .++++||+++. .+++++++++++|+
T Consensus 320 g~~~~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 320 GFTLAG-ADHAIIPVMLGDAV------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp TCCBCC-SSSSEEEEEEECHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcccC-CCCCEEEEEcCChH------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 888774 56688999987421 123566666655 9999999877642 35689999975 48999999999999
Q ss_pred HHHhhh
Q 011801 422 AFVQQD 427 (477)
Q Consensus 422 ~~~~~~ 427 (477)
+++++.
T Consensus 392 ~~~~~~ 397 (401)
T 1fc4_A 392 RIGKQL 397 (401)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 85
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=3.5e-33 Score=283.24 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=233.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++++++++.+..| .+++ +|++|+|+++|+.+++.+++++||.|++++|+|++ +...++.. |.+++.++
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHc-CCceEEEe
Confidence 46778888888777666 4677 99999999999999999999999999999999998 87777766 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+ ++..+ .
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 205 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGVP-I 205 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccCcC-C
Confidence 874 5679999999998753 6789999999999999998 7889999999999999999998 33222 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----------------------cccCCCch
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----------------------SSFGLVSS 302 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----------------------~~~~~vs~ 302 (477)
.+ . ..+.++++.|+||.++.+| |+||++++++.+ +.++.. ..+++.+.
T Consensus 206 ~~----~----~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
T 1vjo_A 206 FL----D----AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPI 275 (393)
T ss_dssp CT----T----TTTCSEEECCSSSTTCSCS-SCEEEEECHHHH-HHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCH
T ss_pred cc----c----ccCccEEEEcCcccccCCC-ceEEEEECHHHH-HHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCH
Confidence 21 1 2355688999999998777 999999966544 333211 11225677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
+.|.++..+|+... +.++++.+++++++++++.+.|++.|+++..+.+ +.++|+.++...+ ..++++.+
T Consensus 276 ~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l 347 (393)
T 1vjo_A 276 NLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVARRL 347 (393)
T ss_dssp HHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCC------HHHHHHHH
Confidence 88888888876421 3346778888999999999999988888776654 3577888763221 22577777
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHh
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~ 425 (477)
.+++||.+.||+.|. .++++||++ +. .+++++++++++|+++++
T Consensus 348 ~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 348 LNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp HHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 766699999998664 468999995 33 367789999999998863
No 86
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-32 Score=276.34 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEecc
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~ 166 (477)
.++++++++++.+..| +. ++++|++|+|+++|+.+++.+++++||.|++++|+|++ +...++.. |++++.++++
T Consensus 52 ~~~~~~~~~~la~~~g--~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 127 (386)
T 2dr1_A 52 RKVHMDTVERLREFLE--VE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESN-GRKAVVLEYE 127 (386)
T ss_dssp HHHHHHHHHHHHHHHT--CS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhC--CC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHh-CCceEEEecC
Confidence 6778888887777666 22 36789999999999999999999999999999999998 77777766 9999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
. ++.+|+++|++++++ +.++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+. .++
T Consensus 128 ~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~~ 194 (386)
T 2dr1_A 128 P--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IKF 194 (386)
T ss_dssp T--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CCT
T ss_pred C--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----ccc
Confidence 4 577999999999864 237899999999999999988 888999999999999999999854321 121
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH---------------H----HhcccCCCchHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG---------------R----KMSSFGLVSSQTQYL 307 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~---------------~----~~~~~~~vs~~~q~~ 307 (477)
. ..+.+++++|+||.++.++ ++||++++++.+.... . +....++.+...|.+
T Consensus 195 ----~----~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 265 (386)
T 2dr1_A 195 ----D----KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFG 265 (386)
T ss_dssp ----T----TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHH
T ss_pred ----c----ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHH
Confidence 1 2255788999999998652 4999999765433220 1 112234567788888
Q ss_pred HHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+..+|+.. .+ .+++.+++++++++++.+.|++.|+++..+. .+.++|++++...+ ..++++.+.++
T Consensus 266 ~~~~l~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~ 336 (386)
T 2dr1_A 266 INVALRII---EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIK------GDEVYEAMRKR 336 (386)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCC------HHHHHHHHHHT
T ss_pred HHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCC------HHHHHHHHHHC
Confidence 87777542 22 2567788899999999999998888877664 36789999874221 22567777766
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
||.+.||..+. .++++||+++. .+++++++++++|++++++.
T Consensus 337 -gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 337 -GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998553 46799999986 49999999999999998764
No 87
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=5.9e-33 Score=279.95 Aligned_cols=301 Identities=17% Similarity=0.179 Sum_probs=226.2
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHH---hhhC
Q 011801 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDL---SWRT 156 (477)
Q Consensus 84 ~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~---~~~~ 156 (477)
...+..++++++|++++ +++++|++|+|+++|+.+++.++. ++||.|+++.|+|+++...+ +..
T Consensus 42 ~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~- 112 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK- 112 (384)
T ss_dssp HHHHHHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHcC--------CCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc-
Confidence 34567899999999996 467899999999999999999987 79999999999999886655 555
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC--eEEEeccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN--IHLVCDEIYA 234 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~--~~lI~De~y~ 234 (477)
|.+++.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++| ++||+||+|+
T Consensus 113 g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 113 GFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp TCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred CCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh
Confidence 99999998863 578999999988853 7899999999999999999 788888999999 9999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHHH-----hcccCCCchHHHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGRK-----MSSFGLVSSQTQYLL 308 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~~-----~~~~~~vs~~~q~~~ 308 (477)
|.... .++. ..+.++++.|+||.+|++| +||++++++. +...... ....+..+.+.|.++
T Consensus 182 ---~~~~~-~~~~--------~~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 247 (384)
T 1eg5_A 182 ---IGKIP-FSLE--------KLEVDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGA 247 (384)
T ss_dssp ---TTTSC-CCCT--------TTCCSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHH
T ss_pred ---cCCcc-cCch--------hcCCCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHH
Confidence 43322 1211 1245688999999999888 7999997653 1211111 012345778888888
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
..+|+.. .+++++.+++++++++.+.+.|++.|+++..+. .+.++++.++.. + ..++.+.+ .++||
T Consensus 248 ~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l-~~~gi 316 (384)
T 1eg5_A 248 ARAMEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI------R-GSTLQNLL-SGYGI 316 (384)
T ss_dssp HHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC------C-HHHHHHHH-HHTTE
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC------C-HHHHHHHH-hhCCe
Confidence 8887652 335677888899999999999998888876543 234667776631 1 12466655 56799
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 386 NVSPGSSFQCT-----------------EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 386 ~v~pg~~f~~~-----------------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.+.||+.|... .++++||+++. .+++++++++++|++++++.+.
T Consensus 317 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred EEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999877532 14799999985 4899999999999999987543
No 88
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.4e-32 Score=280.85 Aligned_cols=342 Identities=14% Similarity=0.154 Sum_probs=242.4
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC--CCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD--YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
.++|+|+.+++..+++.+.+.+.+.-... .+ +.......|++ ..+..++|+++|++++. . ++++|+
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~----~~-~~~~~~~~y~~~~~~~~~~l~~~la~~~~~------~-~~~~v~ 94 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYEND----NA-NVHRGAHQLSVRATDAYEAVRNKVAKFINA------R-SPREIV 94 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHHT----CC-CC--CCSHHHHHHHHHHHHHHHHHHHHTTC------S-CGGGEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhc----cC-CCCcccchHHHHHHHHHHHHHHHHHHHcCC------C-CCCeEE
Confidence 45899999887755566666554421000 00 00001223543 35678999999999872 1 578999
Q ss_pred EeCChHHHHHHHHHHh----cCCCCeEEEcCCCccc----hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCL----ANPGDAFLVPSPYYAA----FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|+|+++|+.+++.++ .++||.|+++.|+|++ +...++.. |.+++.++++ .++.+|+++|++++++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~l~~--- 168 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVLKFVQLD--EQESFDLEHFKTLLSE--- 168 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEEEEECBC--TTSSBCHHHHHHHCCT---
T ss_pred EcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhc-CcEEEEeccC--CCCCcCHHHHHHhhCC---
Confidence 9999999999999999 8999999999999998 44555566 9999999986 4678999999998853
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ... .++... +.++++.|+|
T Consensus 169 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~~-~~~~~~--------~~di~~~s~s 230 (420)
T 1t3i_A 169 ---KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP---HYP-LDVQLI--------DCDWLVASGH 230 (420)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHHH--------TCSEEEEEGG
T ss_pred ---CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC---Ccc-Cchhhc--------CCCEEEEehh
Confidence 7899999999999999999 888999999999999999999842 111 232222 3457889999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHhcc---------------------c-CCCchHHHHHHHH-hcCChhhHHHHHHH
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------------------F-GLVSSQTQYLLAS-MLSDDEFVDNFLVE 324 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------------------~-~~vs~~~q~~~~~-~L~~~~~~~~~~~~ 324 (477)
|.+|.+| +||++++++ +.+.++.... + ...+.+.|.++.. .+.... +..+++
T Consensus 231 K~~~~~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~ 305 (420)
T 1t3i_A 231 KMCAPTG--IGFLYGKEE-ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLGMEN 305 (420)
T ss_dssp GTTSCTT--CEEEEECHH-HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHH
T ss_pred hhcCCCc--eEEEEEchH-HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--HhHHHH
Confidence 9998777 999999654 4444333221 1 1244555555332 332211 123566
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC---
Q 011801 325 TSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--- 395 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--- 395 (477)
..++++++++.+.+.|++. |+++..+. .|.++++.++. . + ..++.+ .+.+.||.+.||..|..
T Consensus 306 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~-~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 306 IHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-L-----H-ASDVAT-MVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-B-----C-HHHHHH-HHHTTTEECBCSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-C-----C-HHHHHH-HHHHCCeEEeeccccchHHH
Confidence 7788888999999999988 88887664 23455556763 1 1 124554 45667999999975532
Q ss_pred ---CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 396 ---TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 396 ---~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++++||+++. .++++++.++++|+++++..+
T Consensus 378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 126799999986 389999999999999987643
No 89
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=1.7e-32 Score=277.41 Aligned_cols=336 Identities=10% Similarity=0.061 Sum_probs=238.1
Q ss_pred Cccccccccccc-cc-cHHHHHHHHHhCCCCccccccccccccccccc--CCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIF--QDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+|||+.++| .+ +++.+.+.+.+.-.. .+.. .....| ....+..++|++++++++ + ++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~--~~~~~~~~g~~~~~~~l~~~la~~~g--------~-~~ 101 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-----FGIG--SGGSGHVSGYSVVHQALEEELAEWLG--------Y-SR 101 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHH-----HCSC--CCSBTTTTCCCHHHHHHHHHHHHHHT--------C-SE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHH-----hCCC--CCCcCcccCChHHHHHHHHHHHHHhC--------C-Cc
Confidence 456899999876 32 335555555442100 0000 011233 334578899999999996 2 24
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.|++++| ++++..++.++.++||.|+++.|+|+.+...++.. |.+++.++. +|+++|++++++. ..++
T Consensus 102 ~i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 102 ALLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred EEEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHc-CCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 5555555 89999999999999999999999999998888876 999998873 3788998888641 1136
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+... ..+...... .+..++++|+||.+|.
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-----~~~di~~~s~sK~~~~ 240 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGSCWLQK-----VKPELLVVTFGKGFGV 240 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCHHHHTT-----CCCSEEEEESSSTTSS
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC-CCchHHhcC-----CCCcEEEeeccchhhc
Confidence 88899999999999999 78899999999999999999986544311 112222221 1233889999999997
Q ss_pred CCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
+| ||++++++ +.+.+.... .+ ...+.+.+.++.+.|+..+ +.+.++.+++++++++++.+.|++.|+++.
T Consensus 241 ~G---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (384)
T 1bs0_A 241 SG---AAVLCSST-VADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQDLPFTLA 314 (384)
T ss_dssp CC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHTTSSCEEC
T ss_pred cC---cEEEeCHH-HHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 77 99999644 444443321 22 1367777777776665322 114567788899999999999999998876
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+ ..|.|+|++++... ...++.+.+.++ ||.+.||..|+. .+.+++||+++.. +++++++++++|+++
T Consensus 315 ~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 315 D-SCSAIQPLIVGDNS------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp S-CCSSBCCEEEESHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEEeCCHH------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 5 45578888886422 123566776655 999999987753 2357999999854 899999999999864
No 90
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=3.7e-33 Score=282.26 Aligned_cols=297 Identities=17% Similarity=0.205 Sum_probs=219.6
Q ss_pred ccCC-CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHH----Hhh
Q 011801 81 IFQD-YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRD----LSW 154 (477)
Q Consensus 81 ~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~----~~~ 154 (477)
.|++ ..+..++|++++++++ .++++|++|+|+++|+.+++.++ .++||.|+++.|+|+++... ++.
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH
Confidence 3544 3568899999999986 46789999999999999999999 89999999999999987643 344
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH----hcCeEEEec
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN----DKNIHLVCD 230 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~----~~~~~lI~D 230 (477)
. |.+++.++++..+++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+ ++|+++|+|
T Consensus 125 ~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~D 194 (390)
T 1elu_A 125 F-GITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVD 194 (390)
T ss_dssp H-CCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEE
T ss_pred h-CcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEE
Confidence 5 9999999986435678999999988753 7899999999999999999 888899999 999999999
Q ss_pred ccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----------------
Q 011801 231 EIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----------------- 293 (477)
Q Consensus 231 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----------------- 293 (477)
|+|+. ...+ ..+ . ..+.+++++|+||.++ +|.++||++++++.+ +.+..
T Consensus 195 ea~~~---g~~~-~~~----~----~~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 260 (390)
T 1elu_A 195 GAQSA---GSLP-LDF----S----RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPT 260 (390)
T ss_dssp CTTTB---TTBC-CCT----T----TSCCSEEEEESSSTTC-CCTTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEE
T ss_pred ccccc---CCcC-CCh----h----hcCCCEEEcccccccc-CCCceEEEEECHHhH-hhcCCccccCCcccccccCccc
Confidence 99973 2211 111 1 2245688999999443 567799999976543 22221
Q ss_pred -------hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEEEEeeccc
Q 011801 294 -------MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLFFWMDLRH 362 (477)
Q Consensus 294 -------~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~~~~~l~~ 362 (477)
....++.+...+.++...+....- ..++++..++++++++++.+.|+++ |+++.. +.++++ +++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~-~~~~~~ 338 (390)
T 1elu_A 261 GWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLV-SFTVDS 338 (390)
T ss_dssp EECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEE-EEEECS
T ss_pred ccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEE-EEEcCC
Confidence 011234555666665555542110 1236677888899999999999987 888773 356554 457763
Q ss_pred hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011801 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 363 ~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
..+ ..++.+.+. ++||.+.||. .++++||+++. .+++++++++++|+++
T Consensus 339 ~~~------~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 339 PLG------HRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp SSC------HHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCC------HHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 211 224666664 5699999986 36799999954 4999999999998753
No 91
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=8.7e-32 Score=273.06 Aligned_cols=298 Identities=14% Similarity=0.129 Sum_probs=227.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
..++|+++|++++ .+++ +|++|+|+++|+.+++.+++++||.|++++|+|+++. ..++.. |++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHc-CCceEEec
Confidence 6899999999997 4566 8999999999999999999999999999999999884 355655 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+ +...+ .
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 189 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCGVP-F 189 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC-C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc---ccCCc-c
Confidence 864 5789999999998753 6889999999999999999 7888999999999999999998 33222 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-------------------------cccCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-------------------------SSFGL 299 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-------------------------~~~~~ 299 (477)
.+. ..+..+++.|++|.++ ++.++|+++++++. .+.+... ...++
T Consensus 190 ~~~--------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (396)
T 2ch1_A 190 YMD--------KWEIDAVYTGAQKVLG-APPGITPISISPKA-LDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT 259 (396)
T ss_dssp CTT--------TTTCCEEECCCC-CCC-CCSSCEEEEECHHH-HHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC
T ss_pred chh--------hcCcCEEEEcCCcccc-CCCCeEEEEECHHH-HHhhhhccCcccceEechHHHHHhhhhhcccCCCCCC
Confidence 211 1223466789999875 44557999996644 3333211 11234
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeeccchhhccCchHHHHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~~~~~~~~~~~e~~l 375 (477)
.+...|.++..+|... .+.++++.+++++++++++.+.|++.|+++..+.++ .++|++++...+ ..++
T Consensus 260 ~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 331 (396)
T 2ch1_A 260 VASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WWKV 331 (396)
T ss_dssp CCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHHH
T ss_pred CcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCC------HHHH
Confidence 5667787777777542 134467778889999999999999889888776542 478888863221 2257
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-c-cCCHHHHHHHHHHHHHHHhhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-A-NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~-~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+.+++++||.+++|..+ ..++++||++ + ..+++++++++++|++++++.+
T Consensus 332 ~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 332 SQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp HHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEecCccc--cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 777777679999998754 3468999999 4 3489999999999999997643
No 92
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-31 Score=267.53 Aligned_cols=336 Identities=15% Similarity=0.129 Sum_probs=239.3
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
++|+|+.+.+..+++.+.+.+.+. +..|.+..|..++++++++++.+.+| .++++|++|+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~----------------~~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~~~ 73 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARD----------------NMTQHAGYGQDSHCAKAARLIGELLE----RPDADVHFIS 73 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHH----------------TTCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEEES
T ss_pred eeEEecCCCcCCCCHHHHHHHHHH----------------HhhccccccccHHHHHHHHHHHHHhC----CCCccEEEeC
Confidence 479998887776667677766552 12466666778899999999887766 5688999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH-HHhCCCeeEE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDR--DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA-QEASINIKGL 195 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~-~~~~~~~k~v 195 (477)
|+++|++.++.++.++||.|++++|+|+++.. .++.. |.+++.++.+ ++.+|+++|++++++. ..++.++++|
T Consensus 74 g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 74 GGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp CHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcC-CCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 99999999999999999999999999998876 35655 9999999874 5789999999999752 0122348999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc-ccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF-TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~-~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++| ||||.+++.+++++|+++|+++|+++|+||+|.++.+...+. .....+ . ....+++.|++|..+ .
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~-----~~~d~~~~s~~K~g~--~ 220 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI-A-----RLTDMFYIGATKAGG--M 220 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-H-----HHCSEEEEECTTTTC--S
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhh-h-----hcCCEEEEecccCCC--C
Confidence 99999 799999999999999999999999999999995432222111 111110 0 012256789999744 3
Q ss_pred ceEEEEEeCCHHHHHHHHHh--cccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC
Q 011801 275 FRVGIVYSFNDTVVNCGRKM--SSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN 351 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~--~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~ 351 (477)
..+|+++++++.+....... .... ..+......+..++.+.. +++.+++++++++++.+.|+..|+++..+.
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 295 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACGIRLAWPS 295 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTTCCBSSCC
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCCeEEccCC
Confidence 56899998655432221111 1111 112222223345666533 355677788888999999955688887777
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++|+|++++. ++++.+++++||.+.+.. ...++++|++++. .+++++++++++|++++++
T Consensus 296 ~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 296 ASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp SSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ccceEEEEcCH-----------HHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 88999998762 466666665599983210 1246799999865 4899999999999988754
No 93
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=5.6e-32 Score=274.89 Aligned_cols=341 Identities=15% Similarity=0.135 Sum_probs=239.0
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.++|.|+.+.+..+++.+.+.+.+.-....... ........|.+..+..++|+++|++++. . ++++|++|
T Consensus 22 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~la~~~~~------~-~~~~v~~~ 91 (406)
T 1kmj_A 22 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAV---HRGIHTLSAQATEKMENVRKRASLFINA------R-SAEELVFV 91 (406)
T ss_dssp EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCC---SSCSSHHHHHHHHHHHHHHHHHHHHTTC------S-CGGGEEEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhhcCCC---CCCcchHHHHHHHHHHHHHHHHHHHcCC------C-CCCeEEEe
Confidence 357888887776555555555544210000000 0000001133445678999999999862 1 57899999
Q ss_pred CChHHHHHHHHHHh----cCCCCeEEEcCCCccchH----HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 118 GGATGANELIMFCL----ANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 118 ~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+|+++|+.+++.++ .++||.|+++.|+|++.. ..++.. |.+++.++++. ++.+|+++|++++++
T Consensus 92 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----- 163 (406)
T 1kmj_A 92 RGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAELRVIPLNP--DGTLQLETLPTLFDE----- 163 (406)
T ss_dssp SSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCEEEEECBCT--TSCBCGGGHHHHCCT-----
T ss_pred CChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-CCEEEEEecCC--CCCcCHHHHHHHhcc-----
Confidence 99999999999999 899999999999987643 334555 99999999864 577899999998853
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ..+ .++... +.+++++|+||.
T Consensus 164 -~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g---~~~-~~~~~~--------~~d~~~~s~~K~ 227 (406)
T 1kmj_A 164 -KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVM---HHP-VDVQAL--------DCDFYVFSGHKL 227 (406)
T ss_dssp -TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHHH--------TCSEEEEEGGGT
T ss_pred -CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcC---CCC-Cccccc--------CCCEEEEEchhc
Confidence 7899999999999999999 888999999999999999999842 111 222221 456888999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhcc----------------------c-CCCchHHHHHHH-HhcCChhhHHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMSS----------------------F-GLVSSQTQYLLA-SMLSDDEFVDNFLVET 325 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~~----------------------~-~~vs~~~q~~~~-~~L~~~~~~~~~~~~~ 325 (477)
+|.+| +||+++++ .+.+.++.... + ...+.+.|.++. ..++... +..+++.
T Consensus 228 ~g~~G--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~ 302 (406)
T 1kmj_A 228 YGPTG--IGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNI 302 (406)
T ss_dssp TSCTT--CEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHH
T ss_pred cCCCC--cEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH--HcCHHHH
Confidence 99888 89999964 44444332211 1 113445555433 3443211 2245667
Q ss_pred HHHHHHHHHHHHHHHhhC-CCeEecC--CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------C
Q 011801 326 SKRLAKRHHNFTKGLEQV-GINCLKS--NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------T 396 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~ 396 (477)
.++++++++++.+.|++. |+++..+ .++++.| .++. . + ..++.+. +.+.||.++||..|.. .
T Consensus 303 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~-~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGK-H-----H-AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETT-C-----C-HHHHHHH-HHHTTEECEEECTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECC-C-----C-HHHHHHH-HhhCCcEEEeccccchHHHHhcC
Confidence 788888999999999988 8888877 6665554 5652 1 1 1245544 4566999999986532 2
Q ss_pred CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.++++||+++.. +++++++++++|+++++.
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 268999999875 899999999999998864
No 94
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-31 Score=270.71 Aligned_cols=302 Identities=12% Similarity=0.096 Sum_probs=223.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC-------------CCeEEEcCCCccchHHHHh
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP-------------GDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~-------------Gd~vlv~~P~y~~~~~~~~ 153 (477)
+..++++++++++.+..| .++++|++|+|+++|+.+++.++..+ ||.|+++.|+|+.+...++
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 456666666666666554 56889999999999999999998766 9999999999999999888
Q ss_pred hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 154 WRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.. |++++.++++. ++.+|+++|++++++. ++++|++++|+||||.+.+ +++|.++|+++|++||+||+|
T Consensus 142 ~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 MM-DLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp HH-TCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred Hc-CceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 87 99999999874 5789999999998752 6889999999999999988 888999999999999999999
Q ss_pred cccccCCCCc-ccHHHhhhhccC-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC------------
Q 011801 234 AATVFSSPKF-TSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------ 299 (477)
Q Consensus 234 ~~~~~~~~~~-~s~~~~~~~~~~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------ 299 (477)
+++.+..... .+...+....+. . +..+++.|++|.++ +|.|+|++++.++.+.+.++....+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 3f9t_A 211 GGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRV 288 (397)
T ss_dssp GGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCC
T ss_pred cchhhhhcccccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccc
Confidence 8654321110 000000000000 2 44577899999875 788999999987765544332222211
Q ss_pred -CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHH
Q 011801 300 -VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 300 -vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+...+.++...+.. ..+++..++++++++++.+.|++.|+++..+..+.++|++++. ..++.+.
T Consensus 289 ~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~ 354 (397)
T 3f9t_A 289 GFGGACTYAVLRYLGR-----EGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKK 354 (397)
T ss_dssp SHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHH
T ss_pred cchHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHH
Confidence 134556665555533 2345667777888999999999988876555556678888764 1246666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+.++ ||.+.+|.. ++++||+++. .+++++++++++|+++++
T Consensus 355 l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 6654 999999853 6899999985 489999999999998864
No 95
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=9.8e-32 Score=273.57 Aligned_cols=344 Identities=11% Similarity=0.032 Sum_probs=238.7
Q ss_pred ccccccccccc-ccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAEN-QLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..+|++..+.+ .++ .+.+.+.+.+.-.. .+.........|+...+..++|+++|++++ . +++|+
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~-~~~i~ 111 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEA-----VGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------K-EAALV 111 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHH-----HCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------C-SEEEE
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHH-----cCCCCCCcCcccCChHHHHHHHHHHHHHhC--------C-CcEEE
Confidence 45688887766 332 23455544432100 000000011235555678999999999986 1 57888
Q ss_pred EeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 116 MGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+|+|++ ++..++.++. .+||.|+++.|+|+.+...++.. |++++.++.+ |+++|++++++.. ..+++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~ 180 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRHN-------DVAHLRELIAADD--PAAPK 180 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECTT-------CHHHHHHHHHHSC--TTSCE
T ss_pred ECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc-CCeEEEEcCC-------CHHHHHHHHHhhc--cCCce
Confidence 888877 7777776653 58999999999999998888766 9999998863 6888988886421 12789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|+...|+... .+...... ...+.+++++||||.+|++
T Consensus 181 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~~~~~---~~~~~~i~~~s~sK~~~~~ 253 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVAERDG---LMHRIDIFNGTLAKAYGVF 253 (401)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHHHHHT---CGGGCSEEEEESSSTTCSC
T ss_pred EEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCC-ceeeeccC---ccccCcEEEeechhhccCC
Confidence 9999999999999999 888999999999999999999954454322 22222111 0113468899999999988
Q ss_pred CceEEEEEeCCHHHHHHHHHhc---cc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS---SF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~---~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
| ||+++++ .+.+.++... .+ ...+++.+.++...++..+ +..+++.+++++++++++.+.|++.|+++..
T Consensus 254 G---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 327 (401)
T 2bwn_A 254 G---GYIAASA-RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKALGMPIID 327 (401)
T ss_dssp C---EEEEECH-HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred C---CEEecCH-HHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 8 9999954 4444443221 11 1234566666666554221 1123566778888999999999888888877
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.++ ++|++++... ...++++.+++++||.+.|+..|+.. +.+++|++++.. +++++++++++|++++++
T Consensus 328 ~~~~-~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 328 HGSH-IVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp CSSS-CEEEECCCHH------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred CCCC-eEEEEeCChH------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 7665 8899987421 12356777776779999999877643 346999999853 899999999999998754
No 96
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=2.8e-31 Score=268.95 Aligned_cols=298 Identities=13% Similarity=0.053 Sum_probs=221.5
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+..++|+++|++++ .++++|++|+|+++|+.+++.++.++||.|+++.|+|+++. ..++.. |.+++.++
T Consensus 43 ~~~~l~~~la~~~g--------~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 113 (392)
T 2z9v_A 43 LYEKVVDKAQKAMR--------LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRY-SPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHHTT--------CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-CSCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHc-CCceEEee
Confidence 46789999999986 45789999999999999999999999999999999998752 334445 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++ +.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +...+ .
T Consensus 114 ~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~~-~ 180 (392)
T 2z9v_A 114 VPY--NEAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSS---FGGMK-T 180 (392)
T ss_dssp CCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTT---BTTBS-C
T ss_pred CCC--CCCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccc---cCCcc-c
Confidence 864 347899999999864 237889999999999999999 7889999999999999999997 22211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHh----------------------cccCCCc
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKM----------------------SSFGLVS 301 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~----------------------~~~~~vs 301 (477)
++.. .+..+++.|+||.+ |.+| +||++++++.+ +.++.. ...++.+
T Consensus 181 ~~~~--------~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (392)
T 2z9v_A 181 HPED--------CKADIYVTGPNKCLGAPPG--LTMMGVSERAW-AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPS 249 (392)
T ss_dssp CGGG--------GTCSEEEECSSSTTCCCSC--CEEEEECHHHH-HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCC
T ss_pred cccc--------ccceEEEecCcccccCCCc--eeEEEECHHHH-HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCC
Confidence 2211 13457889999965 4455 59999965543 333321 1123344
Q ss_pred hHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEec-CC---ceEEEEeeccchhhccCchHHHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLK-SN---AGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~~---~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
...+.++...+... ... +++.+++++++++++.+.|++.|+++.. +. .+.++|+.++...+ ..++.
T Consensus 250 ~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 320 (392)
T 2z9v_A 250 VSEINGLDVALDLY---LNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD------EKALR 320 (392)
T ss_dssp HHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC------HHHHH
T ss_pred HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC------HHHHH
Confidence 45555555555321 233 5667788889999999999888887765 32 46788898863221 12566
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEe-c-cCCHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCF-A-NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~-~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+.+++||.+.||..+. .++++||++ + ..+++++++++++|++++++.+
T Consensus 321 ~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 321 QAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 777665699999998643 468999995 6 5699999999999999997643
No 97
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=2.8e-32 Score=274.06 Aligned_cols=298 Identities=17% Similarity=0.198 Sum_probs=221.3
Q ss_pred cCCCCCcHHHHHH-HHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQA-VAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~a-ia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..+++++ ++++++ .+ +|++|+|+++|+.+++.++.++||.|++++|+|+++...++.. |+++
T Consensus 49 ~~~~~~~~~l~~~~la~~~~--------~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~ 117 (371)
T 2e7j_A 49 EIKTPPIHDFIHNQLPKFLG--------CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNI 117 (371)
T ss_dssp ----CCHHHHHHTHHHHHTT--------SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEE
T ss_pred hhHHHHHHHHHHHHHHHHcC--------CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHc-CCeE
Confidence 4456789999999 999986 23 8999999999999999999999999999999999998888776 9999
Q ss_pred EEEe--ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 161 VPVH--CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 161 ~~v~--~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+.++ .+ .++.+|+++|++++++.... .++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+
T Consensus 118 ~~v~~~~~--~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~ 191 (371)
T 2e7j_A 118 ALVPKTDY--PDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM 191 (371)
T ss_dssp EEECCCCT--TTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB
T ss_pred EEeecccC--CCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC
Confidence 9999 65 35789999999999753211 47899999999999999999 68889999999999999999986322
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------cCCCchHHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------FGLVSSQTQYLLA 309 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------~~~vs~~~q~~~~ 309 (477)
. .++... +..++++|+||.++. |.|+||++++++.+...++.... .+..+...+.++.
T Consensus 192 ~----~~~~~~--------~~di~~~s~sK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 258 (371)
T 2e7j_A 192 P----VSLKEI--------GADFIVGSGHKSMAA-SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLM 258 (371)
T ss_dssp C----CCHHHH--------TCSEEEEEHHHHSSC-CSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHH
T ss_pred C----CChhhc--------CCCEEEecCCcCCCC-CCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHH
Confidence 1 233222 233789999999984 45999999977643220222221 2333444444444
Q ss_pred HhcCChhhHHHHHHHHHHHH--HHHHHHHHHHHhhCCCeEecCC--ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 310 SMLSDDEFVDNFLVETSKRL--AKRHHNFTKGLEQVGINCLKSN--AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l--~~r~~~l~~~L~~~gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
..+.. ++. +..+++ +++++++.+.|++.|+++..+. .+.++|++++ + ..++.+.+. ++||
T Consensus 259 ~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l~-~~gi 322 (371)
T 2e7j_A 259 ASFPH---VRE---RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---V------LYEISKKAK-GGRF 322 (371)
T ss_dssp HHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---H------HHHHHHHSS-SGGG
T ss_pred HHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---C------HHHHHHHHH-HCCE
Confidence 44432 121 445566 7778889999988888887653 3568999886 1 124555555 6799
Q ss_pred EEeCCCCCCC----CCCCEEE-EEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQC----TEPGWFR-VCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~----~~~~~~R-l~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.| ..|.. ..++++| ++++. .+++++++++++|++++++
T Consensus 323 ~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 323 FLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 9988 43322 1267899 99986 5899999999999999875
No 98
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=2.5e-31 Score=269.38 Aligned_cols=299 Identities=13% Similarity=0.123 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVP 162 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~ 162 (477)
.+..+++++++++++ .+++ +|++|+|+++|+.+++.++.++||.|+++.|+|+++. ..++.. |.+++.
T Consensus 52 ~~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~ 122 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRY-GADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHc-CCeeEE
Confidence 356889999999986 3555 8999999999999999999999999999999998742 334445 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+++ +....
T Consensus 123 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~---~~~~~ 189 (393)
T 2huf_A 123 VKSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS---LGGAP 189 (393)
T ss_dssp EECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC
T ss_pred EeCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc---cCCCC
Confidence 99864 4578999999998753 6889999999999999999 8889999999999999999986 33221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcc-cCCCCceEEEEEeCCHHHHHHHHHh----cc---------------------
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKD-MGLPGFRVGIVYSFNDTVVNCGRKM----SS--------------------- 296 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~-~g~~G~RvG~i~~~~~~i~~~~~~~----~~--------------------- 296 (477)
..+ . ..+.++++.|+||. +|++|+ ||+++++ .+.+.++.. .+
T Consensus 190 -~~~----~----~~~~d~~~~s~sK~l~g~~G~--G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (393)
T 2huf_A 190 -MFM----D----RWEIDAMYTGSQKVLGAPPGI--TPVSFSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIY 257 (393)
T ss_dssp -CCT----T----TTTCSEEECCSSSTTCCCSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred -cch----h----hcCccEEEECCCcccccCCCe--EEEEECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCC
Confidence 111 1 22456888999997 557786 9999964 444444432 11
Q ss_pred cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHH
Q 011801 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEI 373 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~ 373 (477)
+++.+...+.++..+++... +..+++..++++++++++.+.|++.|+++..+. +++++|++++...+ ..
T Consensus 258 ~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 329 (393)
T 2huf_A 258 HHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVD------WL 329 (393)
T ss_dssp SCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCC------HH
T ss_pred CCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCC------HH
Confidence 12345555565555554321 123566778888999999999998888776653 35588888863211 12
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++.+.+++++||.+++|..|. .++++||++ +. .+++++++++++|++++++.+
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 330 KAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 577777776799999998653 468999999 53 378899999999999997644
No 99
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=1.8e-31 Score=267.15 Aligned_cols=298 Identities=13% Similarity=0.143 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccc-hHHHHhhhCCcEEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAA-FDRDLSWRTGVQIVPV 163 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~-~~~~~~~~~g~~~~~v 163 (477)
.+..++|+++|++++. ..+++++++|+|+++|+.+++.++.++||.|++++ |+|+. +...+... |.+++.+
T Consensus 37 ~~~~~l~~~la~~~g~------~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 109 (366)
T 1m32_A 37 GVVEQIRQQLTALATA------SEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHAY 109 (366)
T ss_dssp TTHHHHHHHHHHHHCS------SSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHHHHHhCC------CCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHh-CCceEEE
Confidence 5789999999999961 12346899999999999999999999999988776 56654 55556666 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. ++.+|+++|++++++ +.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ..+
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~~- 176 (366)
T 1m32_A 110 DCGE--VARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFG---GIP- 176 (366)
T ss_dssp ECCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTT---TSC-
T ss_pred eCCC--CCCCCHHHHHHHHhc----CCCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCcccc---CcC-
Confidence 9864 467899999999875 235789999999999999999 788999999999999999999732 111
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-c-----------------c--cCCCchH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-S-----------------S--FGLVSSQ 303 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~-----------------~--~~~vs~~ 303 (477)
.++. ..+.+++++|+||.++ .+.++||++++++.+ +.+... . . .+..+..
T Consensus 177 ~~~~--------~~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (366)
T 1m32_A 177 MDIA--------ALHIDYLISSANKCIQ-GVPGFAFVIAREQKL-AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTH 246 (366)
T ss_dssp CCTT--------TTTCSEEEEESSSTTC-CCSSEEEEEEEHHHH-TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHH
T ss_pred cccc--------ccCccEEEecCccccc-CCCceEEEEECHHHH-HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHH
Confidence 1211 1235588999999874 334579999966533 222111 0 0 1345666
Q ss_pred HHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhCCCeEecC---CceEEEEeeccc--hhhccCchHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQVGINCLKS---NAGLFFWMDLRH--LLKEKTLEGEIALW 376 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~gi~~~~~---~~g~~~~~~l~~--~~~~~~~~~e~~l~ 376 (477)
.+.++...++.. ... +++.+++++++++++.+.|++.|+++..+ .+++++|++++. ... ..++.
T Consensus 247 ~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 317 (366)
T 1m32_A 247 TVLAFAQALKEL---AKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYR------FSEFY 317 (366)
T ss_dssp HHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCC------HHHHH
T ss_pred HHHHHHHHHHHH---HHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCC------HHHHH
Confidence 666666666432 223 56678888999999999999888876654 367799999874 111 22466
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.++ ||.+.||..| .++++|++++.. +++++++++++|++++++
T Consensus 318 ~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 318 RRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 666655 9999999877 367999999875 799999999999998764
No 100
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=3.4e-31 Score=270.42 Aligned_cols=285 Identities=14% Similarity=0.199 Sum_probs=211.0
Q ss_pred cccCCCCCcH---HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HH
Q 011801 80 AIFQDYHGLP---EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DL 152 (477)
Q Consensus 80 ~~Y~~~~G~~---~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~ 152 (477)
..|++ .|.+ ++++++|++++ . +++++++|+++|+..++.+++++||.|++++|+|+++.. .+
T Consensus 54 ~~Y~~-~~~~~~~~l~~~ia~~~g--------~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 54 YIYTR-LGNPTVSNLEGKIAFLEK--------T--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp CCBTT-TCCHHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ccccC-CcChHHHHHHHHHHHHhC--------C--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHH
Confidence 35766 4666 89999999986 1 368888888999999999999999999999999999887 56
Q ss_pred hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCeEEEecc
Q 011801 153 SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDE 231 (477)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-~~~~lI~De 231 (477)
+.. |++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+||
T Consensus 123 ~~~-g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 123 TKF-GIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHT-TCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEEC
T ss_pred HHc-CCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEEC
Confidence 655 9999999864 57888887753 7999999999999999998 8999999999 999999999
Q ss_pred cccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhccc---CCCchHHHHH
Q 011801 232 IYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSSF---GLVSSQTQYL 307 (477)
Q Consensus 232 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~ 307 (477)
+|+.+.+.. ++ . .++++++.|+||.+|.+|+|+ ||++++++.+.+.+...... ..++++.|++
T Consensus 186 ~~~~~~~~~----~~-~--------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 252 (404)
T 1e5e_A 186 TFCSPMITN----PV-D--------FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWL 252 (404)
T ss_dssp TTTCTTTCC----GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHH
T ss_pred CCchhhhCC----cc-c--------cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999765431 11 1 146688999999999999998 99999776655355544333 2467788888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---------------CCeEecCC----ceEEEEeeccchhhccC
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---------------GINCLKSN----AGLFFWMDLRHLLKEKT 368 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---------------gi~~~~~~----~g~~~~~~l~~~~~~~~ 368 (477)
+...+.+.+. ..+++.++.+.+.+.|++. |+++.+++ ++++.| +++..
T Consensus 253 ~~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~----- 319 (404)
T 1e5e_A 253 ITRGLSTLNI-------RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG----- 319 (404)
T ss_dssp HHHHHTTHHH-------HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH-----
T ss_pred HHHhHhHHHH-------HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC-----
Confidence 8888876321 1222233334444444433 22222222 666666 77632
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCC-----------------------CC--CCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQC-----------------------TE--PGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~-----------------------~~--~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
.+....++++.|| +.+|.+|+. .+ ++++||+++. |++++++++|+++
T Consensus 320 ----~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~a 391 (404)
T 1e5e_A 320 ----FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQG 391 (404)
T ss_dssp ----HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHH
Confidence 1234557788899 667776652 12 6899999995 7889999999988
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
++.
T Consensus 392 l~~ 394 (404)
T 1e5e_A 392 LDA 394 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 101
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=100.00 E-value=6.9e-32 Score=269.07 Aligned_cols=331 Identities=14% Similarity=0.160 Sum_probs=223.3
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
|..+|+|+.++|+.+.+.+.+.+.+... ....|.+..+..+||+++|++++ .+++++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~ 58 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAEV-------------GDDVYGEDPTINELERLAAETFG----------KEAALF 58 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCCC-------------CCGGGTCCHHHHHHHHHHHHHHT----------CSEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCCC-------------CCcccCCChHHHHHHHHHHHHhC----------CceEEE
Confidence 5678999999999987777777765310 11256666688999999999986 246788
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+++|+.+++.++.+|||.|+++.|+|..... .+... |++++.+ .+ .++.+|+++|++++++......+++
T Consensus 59 ~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 134 (347)
T 1jg8_A 59 VPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTS 134 (347)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhcc-CeEEEEe-cC--CCCccCHHHHHHHhccccccccCce
Confidence 8888999999999999999999999999975332 34445 9999888 43 2467899999988752100112689
Q ss_pred EEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEeccccccc--ccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 194 GLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT--VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 194 ~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+|++++|+||| |.+++.+++++|+++|+++|++||+||+|... .+.+. +...+.. ..+. ++.|+||.+
T Consensus 135 ~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~----~~d~--~~~s~sK~l 205 (347)
T 1jg8_A 135 LIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAG----YADS--VMFCLSKGL 205 (347)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHH----TCSE--EEEESSSTT
T ss_pred EEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhcc----cccE--EEEeccccc
Confidence 99999999999 99999999999999999999999999987521 11222 2222222 2343 345899999
Q ss_pred CCCCceEEE-EEeCCHHHHHHHHHhc-ccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 271 GLPGFRVGI-VYSFNDTVVNCGRKMS-SFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 271 g~~G~RvG~-i~~~~~~i~~~~~~~~-~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
|.+ +|+ +++ ++.+.+.+++.. .++ ..+.+.+.++...|... .+...+ ..++++.+.+.|++.|+
T Consensus 206 ~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~l~~~L~~~~~ 274 (347)
T 1jg8_A 206 CAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKE-DHENARFLALKLKEIGY 274 (347)
T ss_dssp CCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHH-HHHHHHHHHHHHHHHTC
T ss_pred CCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHhcCc
Confidence 743 574 555 444444433322 121 12334444444444321 111111 22455777788877677
Q ss_pred eEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHH
Q 011801 346 NCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAF 423 (477)
Q Consensus 346 ~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~ 423 (477)
++. .+..+.|+|++++.. ... ..++.+.+. +.||.++++. ++++|++++ ..+++++++++++|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 275 SVNPEDVKTNMVILRTDNL----KVN-AHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp BCCGGGCCSSEEEEECTTS----SSC-HHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eeccCCCcceEEEEEcccc----cCC-HHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 652 334556899998731 011 125667775 5699999752 568999995 35899999999999998
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
+++
T Consensus 343 l~~ 345 (347)
T 1jg8_A 343 FRK 345 (347)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 102
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.98 E-value=8.3e-31 Score=264.24 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=222.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDP--DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~--~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~ 162 (477)
...++++.++++++ .++ ++|++|+|+++|+. ++..++++||.|++++|+|.+ +...++.. |.+++.
T Consensus 36 ~~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~ 105 (384)
T 3zrp_A 36 ALAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRY-PVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTS-SCEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHc-CCcEEE
Confidence 45677888888876 344 88999999999999 989999999999999999965 54555555 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ...
T Consensus 106 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~~ 172 (384)
T 3zrp_A 106 LRPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVG---AEE 172 (384)
T ss_dssp ECCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTT---TSC
T ss_pred ecCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECccccc---Ccc
Confidence 99875 4578999999999753 6899999999999999999 888999999999999999999732 111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH------------HHHh-----------c-ccC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC------------GRKM-----------S-SFG 298 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~------------~~~~-----------~-~~~ 298 (477)
.++. ..+..+++.|+||.++ ++.++||++++++.+... .... . .++
T Consensus 173 -~~~~--------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 242 (384)
T 3zrp_A 173 -VKAE--------EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFA 242 (384)
T ss_dssp -CCTT--------TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSS
T ss_pred -cccc--------ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCC
Confidence 1111 2245688999999885 345599999976654433 0111 1 113
Q ss_pred CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHH
Q 011801 299 LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 299 ~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+.+...+.++...+.... +..+++..++++++++++.+.|++.|+++..+. .+.++|+.++. .+ ..+
T Consensus 243 ~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~------~~~ 313 (384)
T 3zrp_A 243 TPPVHVILQLAEAFRLIE--KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-AD------PQK 313 (384)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SC------HHH
T ss_pred CCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CC------HHH
Confidence 455555555555554211 222667788889999999999999888877666 56788998875 11 124
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+.+.+.++ ||.+++|..+.. +++|++++. .+++++++++++|++++++.+.
T Consensus 314 ~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 314 VLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp HHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 66666655 999999875432 899999875 4899999999999999987553
No 103
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.98 E-value=2.6e-31 Score=267.95 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=222.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHHhh--hCCcEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDLSW--RTGVQI 160 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~~~--~~g~~~ 160 (477)
+..++++++|++++ .++++|++|+|+++|+.+++.++. ++||.|++++|+|+.+...+.. ..|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 46788899999886 467899999999999999999987 8999999999999988766543 139999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|++ |+||+|+ +..
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~---~g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATAS---VGQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTT---BTT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchh---cCC
Confidence 9999874 567999999988753 7899999999999999999 78899999999999 9999998 332
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHH-----HhcccCCCchHHHHHHHHhcCC
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGR-----KMSSFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~-----~~~~~~~vs~~~q~~~~~~L~~ 314 (477)
.+ .++... +.+++++|+||.+|.+| +||++++++. +..... .....+..+...+.++...+..
T Consensus 181 ~~-~~~~~~--------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 249 (382)
T 4eb5_A 181 IE-VDVEKI--------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI 249 (382)
T ss_dssp BC-CCHHHH--------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH
T ss_pred cc-cCcccc--------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHH
Confidence 22 222221 34578899999988666 7999887652 211100 0111233455555555555542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
..+.+++.+++++++++++.+.|+++ |+++..+.+ +.++|+.++. .+ ..++.+.+. +.||.+.+|
T Consensus 250 ---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~-~~gi~v~~g 318 (382)
T 4eb5_A 250 ---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IE------GESIVLSLD-MAGIQASTG 318 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SC------HHHHHHHHH-HHTCBCBCC
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cC------HHHHHHHHH-HCCEEEecc
Confidence 13346777888899999999999987 777766542 4467787762 11 124666665 569999999
Q ss_pred CCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 391 SSFQCT-----------------EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 391 ~~f~~~-----------------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
..|... .++++||+++. .+++++++++++|++++++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 876432 25799999985 4899999999999999976543
No 104
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.98 E-value=8.2e-31 Score=267.67 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
....+++++++++++ . +..++++++++|+..++.++.++||.|+++.|+|+.+...+... |.++++++.
T Consensus 104 ~~~~~l~~~la~~~g--------~--~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~ 172 (409)
T 3kki_A 104 YDKPMIEKRLAKFTG--------F--DECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYA-NAQAHPFMH 172 (409)
T ss_dssp TTSCHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHT-TCEEEEECT
T ss_pred HHHHHHHHHHHHHhC--------C--CeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHc-CCeEEEecC
Confidence 446789999999986 1 23455555579999999999999999999999999998888876 999988764
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|+++|++++++. ++++|++++|+||||.+.+ +++|+++|+++|++||+||+|++..++... ..
T Consensus 173 -------~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~ 236 (409)
T 3kki_A 173 -------NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNG-AG 236 (409)
T ss_dssp -------TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CC
T ss_pred -------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 4799999999763 5789999999999999999 889999999999999999999875454221 12
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cC-CCchHHHHHHHHhcCChhhHHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FG-LVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~-~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
...... ...+..+++.||||.+|.+| ||++++++.+......... +. ..+.+.+.++.+.++.. +. .
T Consensus 237 ~~~~~~---~~~~~di~~~s~sK~~~~~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~-~ 306 (409)
T 3kki_A 237 LLAELG---LTREVHFMTASLAKTFAYRA---GAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII---ES-A 306 (409)
T ss_dssp HHHHHT---CGGGCSEEEEESSSTTCSSC---EEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH---HH-C
T ss_pred chhhcC---CCCCCCEEEeecchhhCCCc---eEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH---hc-C
Confidence 222211 01234588899999999664 9999976544332221111 22 24445555555555432 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~ 401 (477)
.+.+++++++++++.+.|++.|+++. ..++++|+.++... ...++.+.++++ ||.+.|+..+. ..+++++
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~i 377 (409)
T 3kki_A 307 DNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDER------NTEKVRDYLESN-GVFGSVFCRPATSKNKNII 377 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHH------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHH------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEE
Confidence 56677888999999999999988765 35678898887432 123566777766 99998865432 3346799
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. .+++++++++++|+++++.
T Consensus 378 Ri~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 378 RLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 999975 4899999999999999975
No 105
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.98 E-value=3.5e-31 Score=272.26 Aligned_cols=342 Identities=16% Similarity=0.131 Sum_probs=240.7
Q ss_pred CCccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCC----CCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 36 NPGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD----YHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 36 ~~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+...+|||+.+.+ .+ +.+.+.+.+.+.-.. -+. ....|.. .....+++++++++++ .
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~-----~~~----~~~~~~~~~G~~~~~~~l~~~la~~~g--------~ 124 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEK-----FGS----GTCGSRMLNGTFHDHMEVEQALRDFYG--------T 124 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHH-----HCS----CCCSCTTTTCCCHHHHHHHHHHHHHHT--------C
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHH-----hCC----CCcccccccCCcHHHHHHHHHHHHHhC--------C
Confidence 4567899998864 21 334455544432100 000 0111222 2334788999999885 2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++.++++++++|+..++.++.++||.|+++.|+|+.+...++.. |.+++.++. +|+++|++++++.. .
T Consensus 125 --~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~~--~ 192 (427)
T 2w8t_A 125 --TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG-NAEIVRFRH-------NSVEDLDKRLGRLP--K 192 (427)
T ss_dssp --SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHS-CSEEEEECT-------TCHHHHHHHHHTSC--S
T ss_pred --CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCeeEEeCC-------CCHHHHHHHHHhcc--C
Confidence 24555666677999999999999999999999999998888876 999988873 48899999886421 1
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+++.+... ..+..+... ..++.+++++||||.
T Consensus 193 ~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g~~~~~~~~---~~~~~di~~~s~sK~ 265 (427)
T 2w8t_A 193 EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN-GRGVYEAQG---LEGQIDFVVGTFSKS 265 (427)
T ss_dssp SSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHTT---CTTCCSEEEEESSST
T ss_pred CCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCchHhhcC---CCcCCcEEEecchhh
Confidence 26899999999999999999 88999999999999999999998766532 233333321 133557899999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHh-ccc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKM-SSF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~-~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
+|++| ||++++++.+ +.+... ..+ +..++..+.++...|+..+ .+++.+++++++++++.+.|++.|+
T Consensus 266 ~g~~g---G~v~~~~~l~-~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 266 VGTVG---GFVVSNHPKF-EAVRLACRPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp TCSCC---EEEEECCTTG-GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCC---CEEEeCHHHH-HHHHHhcccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99887 9999966543 333222 111 2345555555555554321 1356677888899999999998898
Q ss_pred eEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011801 346 NCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIAA 422 (477)
Q Consensus 346 ~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~~ 422 (477)
++. ++..|.++|+.++... ...++++.++++ ||.+.||..|+.. +.+++|++++. .+++++++++++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 338 RLGTETCDSAIVAVMLEDQE------QAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp EESCSSCCSSEEEEEESSHH------HHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEECCHH------HHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 877 4425578999987421 223577777765 9999999877642 34699999986 399999999999999
Q ss_pred HHhhhh
Q 011801 423 FVQQDK 428 (477)
Q Consensus 423 ~~~~~~ 428 (477)
++++..
T Consensus 411 ~l~~~~ 416 (427)
T 2w8t_A 411 AGRAVG 416 (427)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 987643
No 106
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.98 E-value=6.2e-31 Score=264.57 Aligned_cols=292 Identities=13% Similarity=0.155 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHHhh--hCCcEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDLSW--RTGVQIVP 162 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~~~--~~g~~~~~ 162 (477)
.++++.++++++ .++++|++|+|+++|+.+++.++. ++||.|+++.|+|+.+...+.. ..|++++.
T Consensus 46 ~~~~~~la~~~~--------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (382)
T 4hvk_A 46 QEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEY 117 (382)
T ss_dssp HHHHHHHHHHTT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcC--------CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEE
Confidence 467777777765 567899999999999999999987 9999999999999988765443 13999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+ +|+|++|+. ....
T Consensus 118 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~---~~~~ 182 (382)
T 4hvk_A 118 IPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASV---GQIE 182 (382)
T ss_dssp ECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB---TTBC
T ss_pred eccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc---CCCC
Confidence 99873 568999999998864 7899999999999999999 7788999999999 999999873 2211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHHHhcC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~~~L~ 313 (477)
.+.... +..+++.|+||.+|.+| +|+++++++. .+... ...+..+...+.++...+.
T Consensus 183 -~~~~~~--------~~d~~~~s~~K~~g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4hvk_A 183 -VDVEKI--------GADMLTISSNDIYGPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp -CCHHHH--------TCSEEEEESGGGTSCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred -CCchhc--------CCCEEEEeHHHhcCCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHH
Confidence 222211 34578899999888666 6777765543 11111 0123345566666555554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP 389 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p 389 (477)
+...++++..++++++++++.+.|+++ |+.+..+.+ +.++++.++.. + ..++.+.+ .++||.+++
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l-~~~gi~v~~ 317 (382)
T 4hvk_A 249 ---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-E------GESIVLSL-DMAGIQAST 317 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-C------HHHHHHHH-HHTTCBCBC
T ss_pred ---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-C------HHHHHHHH-HHCCEEEee
Confidence 224567788889999999999999987 777765543 23666666531 1 12455555 456999999
Q ss_pred CCCCCCCC-----------------CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 390 GSSFQCTE-----------------PGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 390 g~~f~~~~-----------------~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+.|.... ++++|++++.. +++++++++++|++++++.+
T Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~ 374 (382)
T 4hvk_A 318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLR 374 (382)
T ss_dssp C--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98876543 57999999854 89999999999999997654
No 107
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.98 E-value=2.4e-31 Score=265.21 Aligned_cols=293 Identities=13% Similarity=0.031 Sum_probs=219.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+..++|+++|++++ .++++|++|+|+++|+.+++.++.++||.|++++|+|+++. ..++.. |.+++.++
T Consensus 35 ~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 105 (352)
T 1iug_A 35 VFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 46899999999986 45789999999999999999999999999999999998864 334445 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCC
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~ 242 (477)
++. ++.+|+++|++ .++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+ ++..+
T Consensus 106 ~~~--~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~---~~~~~ 168 (352)
T 1iug_A 106 YPY--GDTPRPEDVAK---------EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLVGE 168 (352)
T ss_dssp CCT--TCCCCTTTSCC---------SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTTBC
T ss_pred CCC--CCCCCHHHHhc---------cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCcc---ccCcc
Confidence 864 45678888765 27889999999999999999 78899999999 99999999997 33222
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH------------HHH---HhcccCCCchHHHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN------------CGR---KMSSFGLVSSQTQYL 307 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~------------~~~---~~~~~~~vs~~~q~~ 307 (477)
..+.. .+..+++.|+||.++ .+.++||++++++.+.. ... .....++.+...+.+
T Consensus 169 -~~~~~--------~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 238 (352)
T 1iug_A 169 -VALEA--------MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLA 238 (352)
T ss_dssp -CCSGG--------GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred -eeccc--------cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHH
Confidence 11111 134577899999553 22348999996654422 111 112234466677776
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
+..++... +.++++.+++++++++++.+.|++.|+++..+. .++++|++++...+ ..++.+.+.+ .||.
T Consensus 239 ~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~-~gi~ 308 (352)
T 1iug_A 239 VAAVLEEV---LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEAFAQ-RGAV 308 (352)
T ss_dssp HHHHHHHH---GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHHHHT-TTEE
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCC------HHHHHHHHHH-CCEE
Confidence 66666432 122567788888999999999998888887664 66789999874221 1246666664 5999
Q ss_pred EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
++||.. +..++++|++++.. +++++++++++|++++++.
T Consensus 309 v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 309 IAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 999973 23468999999865 7999999999999998753
No 108
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.98 E-value=3.3e-31 Score=269.78 Aligned_cols=336 Identities=14% Similarity=0.108 Sum_probs=230.2
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCC---CcHH--HHH-----HHHHHHhcccCCCC
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH---GLPE--FRQ-----AVAKFMGKGRGGRV 107 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---G~~~--lr~-----aia~~~~~~~g~~~ 107 (477)
.++|+++.++|++ ++.+.+.+.+.-.. .....|++.. |.+. +++ .++++++
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g------- 83 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTN-----------KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG------- 83 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-------
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhc-----------CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC-------
Confidence 4679999999998 44455555442100 0123454322 4443 444 5555554
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCc--EEEEEeccCCCCcccCHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGV--QIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.++++|++++|+ +|+.+++.++.++||.|+++.|+|+.+. ..++.. |. ..+++++++ +++.+|+++|++++
T Consensus 84 -~~~~~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~l 159 (407)
T 2dkj_A 84 -AAWANVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFS-GKLYKVVSYGVRP-DTELIDLEEVRRLA 159 (407)
T ss_dssp -CSEEECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECCCT-TTSSCCHHHHHHHH
T ss_pred -CCcceEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhc-CceEEEEecCCCc-ccCccCHHHHHHHH
Confidence 345567677775 5999999999999999999999999884 344444 66 444444342 46789999999999
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. ++++|++++|+|| ...+ +++|.++|+++|+++|+||+|+. +.+.+..... . . ..++
T Consensus 160 ~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~----~-----~-~~di 219 (407)
T 2dkj_A 160 LEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP----L-----P-YAHV 219 (407)
T ss_dssp HHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC----T-----T-TCSE
T ss_pred hhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc----c-----c-cccE
Confidence 743 6889999999998 5566 88999999999999999999986 4333322111 1 1 2457
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCC--chHHHH-HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV--SSQTQY-LLASMLSDDEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~v--s~~~q~-~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
+++|+||.+ +|.|+||++++++.+.+.+......+.. ..+.+. ++...+.... +.++++..++++++++++.+
T Consensus 220 ~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 220 VTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp EEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHH
Confidence 899999965 6889999999755555555443322222 223333 4444554311 23467778888999999999
Q ss_pred HHhhCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC----CCCCCCEEEEEecc-----C
Q 011801 339 GLEQVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF----QCTEPGWFRVCFAN-----M 408 (477)
Q Consensus 339 ~L~~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f----~~~~~~~~Rl~~~~-----~ 408 (477)
.|++.|+++.. +..|+|+|++++... .. ..++.+.+ .++||.+.+|..| ....++++|++++. .
T Consensus 296 ~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~ 369 (407)
T 2dkj_A 296 ELARRGYRIVTGGTDNHLFLVDLRPKG----LT-GKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF 369 (407)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGT----CC-HHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHHhCCceeecCCCCceEEEEECcccC----CC-HHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCC
Confidence 99998988775 356789999997410 01 12455555 5679999999865 22346799999964 5
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 370 ~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 370 TPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999999977
No 109
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.98 E-value=2.2e-30 Score=263.82 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=223.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCc-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~-i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++.++++++ .++++ +++++|+++|+++++.++.++||.|+++.|+|++ +...++.. |++++.++
T Consensus 48 ~~~~~~~la~~~~--------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 118 (411)
T 3nnk_A 48 MNEVMALYRGVFR--------TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRC-RAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHc-CCeEEEEe
Confidence 3567777777775 34444 8889999999999999999999999999999977 77777766 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ .++.+|+++|++++++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+++. ...+ .
T Consensus 119 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~---~~~~-~ 184 (411)
T 3nnk_A 119 VP--WGEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASL---GGNP-L 184 (411)
T ss_dssp CC--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTB---TTBC-C
T ss_pred cC--CCCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCccc---CCcc-c
Confidence 85 35678999999999754 7899999999999999999 77889999999999999999873 2211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-----------------------------
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS----------------------------- 295 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~----------------------------- 295 (477)
.. . ..+..+++.|+||.++ ++.++||++++++.+ +.+....
T Consensus 185 ~~----~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~ 254 (411)
T 3nnk_A 185 ET----D----VWGLDAVSAGMQKCLG-GPSGTSPITLSARME-EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMV 254 (411)
T ss_dssp CT----T----TTTCSEEECCSTTTTC-CCSSEEEEEECHHHH-HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHH
T ss_pred ch----h----ccCCcEEEecCccccC-CCCceEEEEECHHHH-HHHhhcccccccccccccccccCCCCcccccchHHH
Confidence 11 1 2245688999999854 445699999966544 3333221
Q ss_pred ---------ccCCCchHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeeccc
Q 011801 296 ---------SFGLVSSQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRH 362 (477)
Q Consensus 296 ---------~~~~vs~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~ 362 (477)
..++.+...+.++...+... ... +++..++++++++++.+.|++.|+++..+.+ +.++|+.++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (411)
T 3nnk_A 255 MDYWGPERLNHHTEATTALFGARECARLI---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQ 331 (411)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCT
T ss_pred HhhhccccCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCC
Confidence 11334556666665555432 222 6777888899999999999999988776543 6788998874
Q ss_pred hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-ccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-ANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 363 ~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+ ..++.+.+++++||.++||. +...++++||++ +.. +++++++++++|++++++..
T Consensus 332 ~~~------~~~l~~~l~~~~gi~v~~g~--~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 332 GIN------GDQARKLMLEDFGIEIGTSF--GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp TCC------HHHHHHHHHHHHSEEEEECC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCC------HHHHHHHHHHhcCeEEeCcc--CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 322 12567777777799999984 333467999998 644 79999999999999998654
No 110
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.98 E-value=3.1e-31 Score=271.95 Aligned_cols=350 Identities=10% Similarity=0.074 Sum_probs=227.4
Q ss_pred CCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.+.+ .+ +++.+.+.+.+.-+.. + .....|.+..+..+|+++|++++. + . .+
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-----~----~~~~~~~~~~~~~~l~~~la~~~~---~---~-~~ 102 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-----S----HTCFQVLAYEPYLELCEIMNQKVP---G---D-FA 102 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-----S----CCCTTTEECHHHHHHHHHHHHHSS---C---S-SC
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC-----C----CccccccCCHHHHHHHHHHHHhCC---c---c-cc
Confidence 3456789987775 33 3455666555531110 0 001134555688999999999984 1 1 35
Q ss_pred CcEEEeCChHHHHHHHHH---HhcCCCCeEEEcCCCccchHH-HHhhhCCcE-------------EEEEeccC---CCCc
Q 011801 112 DRIVMGGGATGANELIMF---CLANPGDAFLVPSPYYAAFDR-DLSWRTGVQ-------------IVPVHCDI---SNNF 171 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~---~l~~~Gd~vlv~~P~y~~~~~-~~~~~~g~~-------------~~~v~~~~---~~~f 171 (477)
++|++|+|+++|+++++. .+.++| .|++++|+|+++.. .+... |.+ ++.++++. ..++
T Consensus 103 ~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 180 (426)
T 1sff_A 103 KKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALT-GKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180 (426)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHS-SCCTTTTTTSCCCCSSEEEECCCBGGGTBCH
T ss_pred cEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhc-CCccccccccCCCCCCcEEeCCCccccccch
Confidence 899999999999999988 677776 89999999987654 33332 432 66666542 1245
Q ss_pred ccCHHHHHHHHHHHHHhCCCeeEEEE-eCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 172 KITREALEAAYERAQEASINIKGLII-TNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 172 ~i~~~~l~~~~~~~~~~~~~~k~vii-~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
.+|+++|++++++.. .+.++++|++ ++|+| || .+.+.+++++|.++|+++|++||+||+|+++.+.+.. .++. .
T Consensus 181 ~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~-~ 256 (426)
T 1sff_A 181 DDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL-FAME-Q 256 (426)
T ss_dssp HHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGG-G
T ss_pred HHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch-hhhh-h
Confidence 678999999886410 1126777666 35678 99 7889999999999999999999999999976554432 2211 1
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
. +....+.||||.+|. |+|+||++++++ +.+.+.. .......++++|.++.++|+..+ . .+..+
T Consensus 257 ~-------~~~~di~s~sK~~~~-GlriG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~~ 322 (426)
T 1sff_A 257 M-------GVAPDLTTFAKSIAG-GFPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLLQ 322 (426)
T ss_dssp T-------TSCCSEEEECGGGGT-SSCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHHH
T ss_pred c-------CCCCCEEEEcccccC-CCceEEEEEcHH-HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHHH
Confidence 1 111224499999995 999999999654 4333322 11223467788888876664211 0 01223
Q ss_pred HHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 328 RLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
++++.++.+.+.|++ .. +....+. |+|+|++++..... .......++++.+++ +||.+.||+.| +++
T Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~ 396 (426)
T 1sff_A 323 KANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNV 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCE
Confidence 334444444444443 22 2333344 68999998642110 011223356777665 59999999764 579
Q ss_pred EEEEec-cCCHHHHHHHHHHHHHHHhhh
Q 011801 401 FRVCFA-NMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 401 ~Rl~~~-~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+||+++ ..+++++++++++|++++++.
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999997 459999999999999998753
No 111
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.97 E-value=6.1e-30 Score=264.95 Aligned_cols=318 Identities=14% Similarity=0.183 Sum_probs=219.6
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~ 159 (477)
.|.+..+..+||+++|++++ .+++++|+|+++|+.+++.+++++|| +++.|+| +.+...+... |.+
T Consensus 70 ~y~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~-G~~ 136 (456)
T 2ez2_A 70 AYAGSENFYHLERTVQELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKN-GAV 136 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHT-TCE
T ss_pred hcccChhHHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHc-CCE
Confidence 46666778999999999986 24799999999999999999999999 8889999 7767777766 999
Q ss_pred EEEEeccCC----C----CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCDIS----N----NFKITREALEAAYERAQEASINIKGLIITNPSN-PLGTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~~~----~----~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
++.++++.. + +|.+|+++|++++++.. ..++++|++++|+| |||.+++.+++++|+++|+++|++||+|
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D 214 (456)
T 2ez2_A 137 FVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 999988631 2 37899999999997521 12468999999999 9999999999999999999999999999
Q ss_pred ccccc----------cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc----
Q 011801 231 EIYAA----------TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---- 296 (477)
Q Consensus 231 e~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---- 296 (477)
|+|+. ..+.+..+.++.+... ....++++ |++|..+ +| |.||++++++.+.+.+.....
T Consensus 215 e~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~----~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 215 ATRCVENAYFIKEQEQGFENKSIAEIVHEMF----SYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH----TTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccccccccCCcchhhhhhhhc----ccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 99985 3344433222111111 11234444 7888765 77 889999966656554443321
Q ss_pred ---cCCCchHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccch---hhccCc
Q 011801 297 ---FGLVSSQT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL---LKEKTL 369 (477)
Q Consensus 297 ---~~~vs~~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~---~~~~~~ 369 (477)
+...+... +.++...++ .++ ++..++..+..+.+.+.|.+.|+++..+.+|+++|++++.. .+...+
T Consensus 288 ~~~~~~~~~~~~~a~a~~~~~---~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 361 (456)
T 2ez2_A 288 MPSYGGLAGRDMEAMAIGLRE---AMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEF 361 (456)
T ss_dssp CTTTTTCCHHHHHHHHHHHHH---HTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC
T ss_pred cccccCcchhHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhc
Confidence 11223222 221222221 111 12223334445677788887788877778889999988532 122222
Q ss_pred hHHHHHHHHHHHhcCeEEeC-CCCCC----------CCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 370 EGEIALWRTIVNDVKLNVSP-GSSFQ----------CTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~p-g~~f~----------~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
. ...++..+++++||.+.+ |..|. ....+++|++++. .+++++++++++|++++++.
T Consensus 362 ~-~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 362 P-AQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp H-HHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred c-HHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 1 123466666777998766 44331 1124789999985 48999999999999999763
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=2.8e-30 Score=261.18 Aligned_cols=299 Identities=13% Similarity=0.131 Sum_probs=221.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~ 165 (477)
..++++.++++++. . ++++|++|+|+++|++.++.++.++||.|+++.++|.+ +...++.. |.+++.+++
T Consensus 58 ~~~l~~~la~~~~~------~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 129 (393)
T 3kgw_A 58 MEEIKQGIQYVFQT------R-NPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRI-GARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHHTC------C-CSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHHhCC------C-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHc-CCceEEEeC
Confidence 45777777777751 1 23469999999999999999999999999999988753 24555555 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +.... ..
T Consensus 130 ~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~---~g~~~-~~ 195 (393)
T 3kgw_A 130 KP--GEHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVAS---LGGVP-IY 195 (393)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---TTTSC-CC
T ss_pred CC--CCCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcc---ccCcc-cc
Confidence 64 3478999999999764 7899999999999999999 7789999999999999999997 22211 11
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc-------------------------cCCC
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-------------------------FGLV 300 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~-------------------------~~~v 300 (477)
. . ..+..+++.|+||.++ ++.++||++++++. .+.+..... .++.
T Consensus 196 ~----~----~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 3kgw_A 196 M----D----QQGIDIMYSSSQKVLN-APPGISLISFNDKA-KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT 265 (393)
T ss_dssp T----T----TTTCCEEEEESSSTTC-CCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred h----h----hcCCCEEEecCccccc-CCCceeEEEECHHH-HHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence 1 1 2245578889999874 34459999996554 343332110 1234
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+...+.++...+...+ +..+++..++++++++++.+.|++.|+++..+. .++++|+.++...+ ..++.
T Consensus 266 ~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 337 (393)
T 3kgw_A 266 PVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYN------WRDIV 337 (393)
T ss_dssp CHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBC------HHHHH
T ss_pred CHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCC------HHHHH
Confidence 5566666655554321 233677788899999999999999988776332 35778888874322 12577
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEe-ccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCF-ANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+++++||.+.+|..+ ..++++|+++ +.. +++++++++++|++++++.+
T Consensus 338 ~~l~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 338 SYVLDHFSIEISGGLGP--TEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHCEECBCCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCEEEeCCccc--CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 77777679999999754 3467999998 654 89999999999999998754
No 113
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=1.5e-30 Score=266.53 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=235.0
Q ss_pred CccccccccccccccHHHHHHHHHhCCC--CcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPY--ASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
..++|.|+.+.+..+++.+.+.+.+.-. ...-.+.. . .....|....+..++++.++++++ .++++|
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~v 88 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPAS--R-SHRFGWQAEEAVDIARNQIADLVG--------ADPREI 88 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTC--T-TSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCc--c-ccchhHHHHHHHHHHHHHHHHHcC--------CCCCeE
Confidence 4566777776666566667776665421 00000000 0 000001111234678888888876 567899
Q ss_pred EEeCChHHHHHHHHHHhcC----CCCeEEEcCCCccchHHHH---hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLAN----PGDAFLVPSPYYAAFDRDL---SWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~----~Gd~vlv~~P~y~~~~~~~---~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|+|+++|+++++.++.+ +||.|+++.|+|+++...+ ... |++++.++++. ++.+|+++|++++++
T Consensus 89 ~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~--- 162 (423)
T 3lvm_A 89 VFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVTYLAPQR--NGIIDLKELEAAMRD--- 162 (423)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHc-CCEEEEeccCC--CCccCHHHHHHhcCC---
Confidence 9999999999999998874 8999999999999887655 444 99999999874 678899999998864
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+ + .... ..+..+++.|+|
T Consensus 163 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~-~~~~--------~~~~di~~~s~s 224 (423)
T 3lvm_A 163 ---DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---P-IDLS--------QLKVDLMSFSGH 224 (423)
T ss_dssp ---TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---C-CCTT--------TSCCSEEEEEST
T ss_pred ---CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---C-cChh--------hcCCCEEEechH
Confidence 7899999999999999999 78899999999999999999974211 1 1111 224558899999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
|.+|.+| +|+++++++.+.. +... ...+..+...+.++...+.. ....+++..++++++++.+.+
T Consensus 225 K~~g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~ 298 (423)
T 3lvm_A 225 KIYGPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWN 298 (423)
T ss_dssp TTTSCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9888666 9999997653322 1111 11233455566655555542 233467788889999999999
Q ss_pred HHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-----------------
Q 011801 339 GLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE----------------- 397 (477)
Q Consensus 339 ~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~----------------- 397 (477)
.|+++ |+.+..+.+ +.++++.++.. + ..++.+.+ .+ |.+.+|..|.+..
T Consensus 299 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (423)
T 3lvm_A 299 GIKDIEEVYLNGDLEHGAPNILNVSFNYV-E------GESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELA 368 (423)
T ss_dssp HHTTSTTEEEESCSTTBCTTEEEEEETTS-C------HHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHH
T ss_pred HHhcCCCEEEeCCccccCCCeEEEEeCCC-C------HHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCcccc
Confidence 99988 888776553 23445555321 1 11344444 34 9999998775421
Q ss_pred CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 398 PGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 398 ~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
++++||+++.. +++++++++++|++++++.+.
T Consensus 369 ~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 369 HSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 47999999854 889999999999999987554
No 114
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=7.5e-30 Score=260.34 Aligned_cols=297 Identities=9% Similarity=0.097 Sum_probs=221.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEE-EeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIV-MGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~-~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++.++++++ .+++.++ +++|+++|+.+++.++.++||.|++++|+|++ +...++.. |++++.++
T Consensus 46 ~~~l~~~la~~~g--------~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 116 (416)
T 3isl_A 46 MNETMEMLRELFQ--------TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERY-GANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHHTT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhc-CCeeEEEe
Confidence 4566777777665 4566665 88999999999999999999999999999987 66666666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. .... .
T Consensus 117 ~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~~-~ 182 (416)
T 3isl_A 117 CEW--GTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATI---GGCE-V 182 (416)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTT---TTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccc---cCCC-c
Confidence 874 4578999999999743 7899999999999999999 88899999999999999999973 2211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------------------------
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------------------------ 294 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------------------------ 294 (477)
... ..+..+++.|+||.++ .+.++|+++++++.+ +.+...
T Consensus 183 ~~~--------~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~ 252 (416)
T 3isl_A 183 KVD--------EWKIDAAIGGTQKCLS-VPSGMAPITYNERVA-DVIAARKKVERGIATQADRAALSGNRPITSNYFDLS 252 (416)
T ss_dssp CTT--------TTTCSEEECCSSSTTC-CCSSEEEEEECHHHH-HHHHTC------------------CCCCSCSTTCHH
T ss_pred chh--------hcCCCEEEecCccccC-CCCCeEEEEECHHHH-HHhhccccccccccccccchhccCCCCCCccccchH
Confidence 111 2245688999999854 445699999966544 333211
Q ss_pred ----------cccCCCchHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeec
Q 011801 295 ----------SSFGLVSSQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDL 360 (477)
Q Consensus 295 ----------~~~~~vs~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l 360 (477)
...++.+...+.++...+... ... +++..++++++++++.+.|++.|+++..+.+ +.++|+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (416)
T 3isl_A 253 QLEDYWSERRLNHHTEATTMLYALREGVRLV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEI 329 (416)
T ss_dssp HHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEEC
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeC
Confidence 012334556666665655432 333 6778888999999999999998988776653 56888888
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHH-HHHHHHHHHHHHhhhh
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDT-LQVALNRIAAFVQQDK 428 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~-l~~~l~~l~~~~~~~~ 428 (477)
+...+ ..++.+.+++++||.+++|.. ...++++|+++.. .++++ +++++++|++++++..
T Consensus 330 ~~~~~------~~~l~~~L~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 330 PGGID------GESVRDMLLAQFGIEIASSFG--PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CTTCC------HHHHHHHHHHHHCEECBCCCS--TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC------HHHHHHHHHHhCCEEEecCCC--CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 74322 125777777777999999863 3346899999943 35555 9999999999998754
No 115
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=2.7e-30 Score=257.23 Aligned_cols=296 Identities=10% Similarity=0.027 Sum_probs=219.1
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
.+..++|++++++++ +..++++|++|+|+++|+.+++.++.+ |.|++++|.|+++ ...++.. |.+++.+
T Consensus 33 ~~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 103 (353)
T 2yrr_A 33 RVNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALH-GLDPEVL 103 (353)
T ss_dssp HHHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHc-CCceEEE
Confidence 346889999999886 223478899999999999999999876 8999999998875 3444555 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +...+
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~---~~~~~- 169 (353)
T 2yrr_A 104 DFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT---LGMLP- 169 (353)
T ss_dssp ECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT---TTTSC-
T ss_pred eCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc---ccccc-
Confidence 9864 4678999999998752 6789999999999999999 7788999999999999999996 33222
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHH-----------------HhcccCCCchHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGR-----------------KMSSFGLVSSQTQ 305 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~-----------------~~~~~~~vs~~~q 305 (477)
.++... +..+++.|++|.+ |.+| +||++++++.+ +.++ .....++.+...+
T Consensus 170 ~~~~~~--------~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 2yrr_A 170 FSMRAM--------GVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLH 238 (353)
T ss_dssp CCHHHH--------TCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHH
T ss_pred cccccc--------CceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCCCCHHHH
Confidence 233322 2346788999965 4456 79999976544 2222 1112234566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC--ceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 306 YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN--AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 306 ~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
.++...+.... +..+++.+++++++++++.+.|++.|+++..+. +++++|++++...+ ..++.+.+.++
T Consensus 239 ~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~- 309 (353)
T 2yrr_A 239 YALLEALDLVL--EEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVD------ADRLVRALYAE- 309 (353)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCC------HHHHHHHHHHT-
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCC------HHHHHHHHHHC-
Confidence 66666654321 222567788889999999999998888877654 56777888863221 12466666655
Q ss_pred CeEEeCCCCCCCCCCCEEEEEe-ccCCHHHHH-HHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQ-VALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~-~~~~~e~l~-~~l~~l~~~~~~ 426 (477)
||.++||..|. .++++|+++ +..++++++ +++++|+++++.
T Consensus 310 gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 310 GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 99999998664 367899999 435888998 999999998753
No 116
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.97 E-value=3.4e-30 Score=257.21 Aligned_cols=333 Identities=12% Similarity=0.136 Sum_probs=226.1
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
+++|+|+.+.+..+.+.+.+.+.+... .....|+......++++.++++++ .+++|++|
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~~~ 65 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLV 65 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEE
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc------------CcccccccchHHHHHHHHHHHHhC---------CCCcEEEe
Confidence 367999887554456667777766411 012345433334566666666653 14469999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--HhhhC-CcEEEEEeccCCCCcccCHHHHHH-HHHHHH-HhCCCe
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRD--LSWRT-GVQIVPVHCDISNNFKITREALEA-AYERAQ-EASINI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--~~~~~-g~~~~~v~~~~~~~f~i~~~~l~~-~~~~~~-~~~~~~ 192 (477)
+|+++|+.+++.++.++||.|+++.|+|..+... +.... |.+++.++.+ ++.+|+++|++ ++++.. ..+.++
T Consensus 66 ~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 66 PTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp SCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred CCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999999999999999999999999998766544 55444 8899888864 46899999998 775310 112368
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
++|++++|+| ||.+++.+++++|+++|+++|++||+|++|..+.+ .+..... ..+.. ..+ +++.|+||.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~----~~d--~~~~s~sK~- 213 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAE-MTWKA----GVD--ALSFGATKN- 213 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTT-TTGGG----TCC--EEEECCGGG-
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHH-hhhhh----cCC--EEEEecccC-
Confidence 9999999987 99999999999999999999999999999974311 1111111 00000 123 345699998
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc-ccCCC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMS-SFGLV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GI 345 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~-~~~~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi 345 (477)
|. ....||++++++.+ +.+.... ..+.. +...+..+...+.+..+ .+..++++++++++.+.|+++ |+
T Consensus 214 g~-~~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~g~ 286 (356)
T 1v72_A 214 GV-LAAEAIVLFNTSLA-TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGGV 286 (356)
T ss_dssp TC-SSCEEEEESSGGGH-HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CC-cCccEEEEECHHHH-hhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhhCCCc
Confidence 53 23345888755443 3333221 11211 22333334555655333 234556677888899999885 88
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
++..+.+++|+|++++. ++.+.+. ++||.++||. |+ ++++|++++.. +++++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 287 EVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp EEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred EEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 87767778899998862 3666664 5699999987 54 68999998653 8999999999999987
Q ss_pred hh
Q 011801 425 QQ 426 (477)
Q Consensus 425 ~~ 426 (477)
++
T Consensus 351 ~~ 352 (356)
T 1v72_A 351 DR 352 (356)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 117
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=2.4e-30 Score=263.46 Aligned_cols=332 Identities=15% Similarity=0.137 Sum_probs=231.0
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC----CCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ----DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+.+.|+.+.+..+++.+.+.+.+.-... . ......|+ ...+..++++++|++++ .++++|
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 89 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRS-----G---ASTVGAHPSARRSAAVLDAAREAVADLVN--------ADPGGV 89 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHC-----C---SSSCSSSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhc-----C---CCCCCccHHHHHHHHHHHHHHHHHHHHhC--------CCCCeE
Confidence 4677877777655555555554421000 0 00001232 12356889999999986 467899
Q ss_pred EEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhh----hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSW----RTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~----~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|+|+++++.+++.++ .++||.|+++.|+|+.+...+.. . |.+++.+++++ .++.+|+++|++++++
T Consensus 90 ~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~v~~v~~~~-~~~~~d~~~l~~~l~~--- 164 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-GAKVKWAEVDI-ETGELPTWQWESLISK--- 164 (406)
T ss_dssp EEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-BCEEEEECCCT-TTCCCCGGGHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-CCeEEEEecCc-ccCCcCHHHHHHHhCC---
Confidence 99999999999999887 78999999999999987654443 4 99999999863 3467899999988853
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|.++|+++|++||+||+|+. .... .++... +..+++.|+|
T Consensus 165 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~-~~~~~~--------~~d~~~~s~~ 226 (406)
T 3cai_A 165 ---STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA---PYRL-LDIRET--------DADVVTVNAH 226 (406)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT---TTCC-CCHHHH--------CCSEEEEEGG
T ss_pred ---CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCCC-CCchhc--------CCCEEEeehh
Confidence 7899999999999999999 78899999999999999999973 2111 222222 3457889999
Q ss_pred cccCCCCceEE-EEEeCCHHHHHHHHHhcc-----------cCCCchHHHHHHHHhcCChh------------hHHHHHH
Q 011801 268 KDMGLPGFRVG-IVYSFNDTVVNCGRKMSS-----------FGLVSSQTQYLLASMLSDDE------------FVDNFLV 323 (477)
Q Consensus 268 K~~g~~G~RvG-~i~~~~~~i~~~~~~~~~-----------~~~vs~~~q~~~~~~L~~~~------------~~~~~~~ 323 (477)
|.+| |+ +| |++++++ +.+.++.... .++.+...+.++...++... .++++++
T Consensus 227 K~~g-~~--~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~ 302 (406)
T 3cai_A 227 AWGG-PP--IGAMVFRDPS-VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQ 302 (406)
T ss_dssp GGTS-CS--CEEEEESCHH-HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHH
T ss_pred hhcC-CC--cCeEEEEehH-HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHH
Confidence 9887 65 99 9998554 4333332211 23345554444444442110 0122567
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC------CC
Q 011801 324 ETSKRLAKRHHNFTKGLEQV-GINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS------SF 393 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~-gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~------~f 393 (477)
+.+++++++++++.+.|++. |+++..+. ++ ++++.++.. + ..++.+.+. +.||.+++|+ .|
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-~------~~~~~~~L~-~~gi~v~~g~~~~~~~~~ 373 (406)
T 3cai_A 303 SADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-P------ADRVVQRLA-DNGILAIANTGSRVLDVL 373 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-C------HHHHHHHHH-HTTEECEECCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-C------HHHHHHHHH-HCCcEEecCChHHHHHHc
Confidence 78888899999999999987 77776553 44 688887631 1 124556554 5699999987 33
Q ss_pred CCC-CCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 394 QCT-EPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 394 ~~~-~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+.. .++++|++++.. +++++++++++|++
T Consensus 374 g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 374 GVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 322 357899999864 79999999999875
No 118
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=2.7e-29 Score=253.36 Aligned_cols=298 Identities=12% Similarity=0.108 Sum_probs=220.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEc-CCCccchH-HHHhhhCCcEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVP-SPYYAAFD-RDLSWRTGVQIV 161 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~-~P~y~~~~-~~~~~~~g~~~~ 161 (477)
...+++++++++++... .+++++|++|+|+++|+.+++.++. ++||.|+++ .|+|+.+. ..++.. |.+++
T Consensus 39 ~~~~~~~~l~~~~~~~~----~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-g~~~~ 113 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAA----ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVD 113 (385)
T ss_dssp HHHHHHHHHHHHTTCCG----GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHHHhCCCC----CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHc-CCceE
Confidence 35678889999987533 3568899999999999999999998 899999888 56776653 455555 99999
Q ss_pred EEec-cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEeccccccccc
Q 011801 162 PVHC-DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVF 238 (477)
Q Consensus 162 ~v~~-~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~ 238 (477)
.+++ + .++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++ |++||+||+|+.
T Consensus 114 ~v~~~~--~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~--- 180 (385)
T 2bkw_A 114 VVRPLK--IGESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI--- 180 (385)
T ss_dssp EECCSS--TTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT---
T ss_pred EEecCC--CCCCCCHHHHHHHHhcC-----CCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECcccc---
Confidence 9998 5 35779999999998741 6889999999999999999 77899999999 999999999973
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHH----------------------HHhc
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCG----------------------RKMS 295 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~----------------------~~~~ 295 (477)
.... .++ . ..+.++++.|+||.++ .+| +||++++++.+.+.+ ....
T Consensus 181 ~~~~-~~~----~----~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (385)
T 2bkw_A 181 GCEE-FEF----D----EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYE 249 (385)
T ss_dssp TTSC-CCT----T----TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHH
T ss_pred CCcc-ccc----c----ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhh
Confidence 2221 121 1 2244578899999764 566 599999765543121 1111
Q ss_pred c-----cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH-hhCCCeEecC-----CceEEEEeeccchh
Q 011801 296 S-----FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL-EQVGINCLKS-----NAGLFFWMDLRHLL 364 (477)
Q Consensus 296 ~-----~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L-~~~gi~~~~~-----~~g~~~~~~l~~~~ 364 (477)
. +++.+...+.++...++... +..+++..++++++++++.+.| ++.|+++..+ ..++++|++++.
T Consensus 250 ~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 325 (385)
T 2bkw_A 250 AGKGAYFATPPVQLINSLDVALKEIL--EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD-- 325 (385)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC--
Confidence 1 23456666666666664311 1125667788889999999999 8888887653 246789998873
Q ss_pred hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE-ec----cCCHHHHHHHHHHHHHHHhh
Q 011801 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC-FA----NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 365 ~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~-~~----~~~~e~l~~~l~~l~~~~~~ 426 (477)
..++.+.+. ++||.+++|..+. ..++++|++ ++ ..+++++++++++|++++++
T Consensus 326 -------~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 326 -------PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp -------HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 124666665 5699999997653 246799999 76 35899999999999998764
No 119
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=3.5e-30 Score=259.48 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=223.6
Q ss_pred Ccccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+||++.+. |.+ +++.+.+.+.+.-.. .+ .....|+ ..+..++++++|++++ + ++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~-----~~----~~~~~y~-~~~~~~l~~~la~~~g--------~-~~ 87 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK-----LL----HVSNLYE-NPWQEELAHKLVKHFW--------T-EG 87 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH-----CS----CCCTTBC-CHHHHHHHHHHHHTSS--------S-CE
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHh-----cc----ccCcccC-CHHHHHHHHHHHhhcC--------C-CC
Confidence 45678998776 344 345555555442100 00 0112464 3467899999999874 3 48
Q ss_pred cEEEeCChHHHHHHHHHH---hc---CCC-CeEEEcCCCccchHHHHhhhCCc-------E-----EEEEeccCCCCccc
Q 011801 113 RIVMGGGATGANELIMFC---LA---NPG-DAFLVPSPYYAAFDRDLSWRTGV-------Q-----IVPVHCDISNNFKI 173 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~---l~---~~G-d~vlv~~P~y~~~~~~~~~~~g~-------~-----~~~v~~~~~~~f~i 173 (477)
+|++|+|+++|+.+++.. +. +|| |.|++++|+|+++...+....+. . +..++. .
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 160 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------N 160 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------T
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------c
Confidence 999999999999999865 35 788 99999999999876654433121 1 333332 4
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
|+++|++++++ ++++|++++|+||||.+ .+.+++++|+++|+++|+++|+||+|+++.+.+.. .++... .
T Consensus 161 d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-~- 231 (375)
T 2eh6_A 161 DIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHF-N- 231 (375)
T ss_dssp CHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGG-T-
T ss_pred hHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhc-C-
Confidence 78898887753 78999999999999999 46888999999999999999999999975443322 222221 1
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
....+ + ||||.+| +|+|+||++++++ +.+.++. .......+++.|.++.+.|+.. + +..++++
T Consensus 232 ---~~~d~-~--s~SK~~~-~g~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~----~~~~~~~ 296 (375)
T 2eh6_A 232 ---LKPDV-I--ALAKGLG-GGVPIGAILAREE-VAQSFTPGSHGSTFGGNPLACRAGTVVVDEV---E----KLLPHVR 296 (375)
T ss_dssp ---CCCSE-E--EECGGGG-TTSCCEEEEEEHH-HHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH---H----HHHHHHH
T ss_pred ---CCCCE-E--EEccccc-CCCCeEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H----HHHHHHH
Confidence 11222 2 8889999 7999999999654 4433332 1222235777887777666432 1 4566777
Q ss_pred HHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CC
Q 011801 331 KRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MD 409 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~ 409 (477)
++++++.+.|++++....++ .|+|+|++++.. ..++++.+.+ +||.+.|+ +++++|++++. .+
T Consensus 297 ~~~~~l~~~L~~~~~~~~~~-~g~~~~~~~~~~--------~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~ 360 (375)
T 2eh6_A 297 EVGNYFKEKLKELGKGKVKG-RGLMLGLELERE--------CKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQ 360 (375)
T ss_dssp HHHHHHHHHHHHTTSSEEEE-ETTEEEEECSSC--------CHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCceE-EEEEEEEEEcCc--------HHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCC
Confidence 88889999998876544443 467899998741 1246666664 69999986 26789999874 59
Q ss_pred HHHHHHHHHHHHHHH
Q 011801 410 DDTLQVALNRIAAFV 424 (477)
Q Consensus 410 ~e~l~~~l~~l~~~~ 424 (477)
++++++++++|++++
T Consensus 361 ~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 361 KEHIDRAISVLREIL 375 (375)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998763
No 120
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.97 E-value=1.8e-29 Score=259.42 Aligned_cols=356 Identities=11% Similarity=0.038 Sum_probs=211.2
Q ss_pred CCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+.+.+||++.+ .|+++ ++.+.+.+.+. ......|....+..+.++++++++.+..+ .++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 89 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQ-------------AARLPFVHGSQFSSDVLEEYAGRLARFVG----LPT 89 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCEEHHHHHHHHHHHHHTT----CTT
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHH-------------HHhcccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 34568999876 56653 45555555442 11222343334556777777777776544 467
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccchHHHHhhhCCc--------------EEEEEeccCCC
Q 011801 112 DRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAFDRDLSWRTGV--------------QIVPVHCDISN 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~~~~~~~~~g~--------------~~~~v~~~~~~ 169 (477)
++|++|+|+++|++.+++++. .+++.|++.+|+|+++...+....+. .+..++.+ +
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 167 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKP--D 167 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCC--C
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCC--c
Confidence 899999999999999998875 44789999999999887554433222 11222221 1
Q ss_pred C---cccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CC-Cccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 170 N---FKITREALEAAYERAQEASINIKGLIITNP-SN-PLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 170 ~---f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~N-PtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
. ...|+++|++++++.. ..+++ +++++| +| ++|. +.+.+++++|.++|+++|++||+||+|.++...+..
T Consensus 168 ~~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~- 243 (430)
T 3i4j_A 168 PARNGAEDAEGLRALLEREG--PETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP- 243 (430)
T ss_dssp TTSCHHHHHTHHHHHHHHHC--GGGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-
T ss_pred ccchhhHHHHHHHHHHHhcC--CCCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch-
Confidence 1 1235688988887531 01444 455566 56 8886 668888999999999999999999999986555432
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH------hcccCCCchHHHHHHHHhcCChh
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK------MSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~------~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
.+.. ..+ +..++ +.+|||.+| +| +|+||+++++ .+.+.+.+ ....+..++++|.++.++|+..+
T Consensus 244 ~~~~-~~~--~~~~d----i~t~sK~l~-~G~~r~G~~~~~~-~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 314 (430)
T 3i4j_A 244 LALS-RWS--GVTPD----IAVLGKGLA-AGYAPLAGLLAAP-QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE 314 (430)
T ss_dssp SGGG-GTT--TCCCS----EEEECGGGT-TTSSCCEEEEECH-HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred hhhh-hhc--CCCCc----EEEEccccc-CCccccEEEEECH-HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence 2221 110 00122 337899999 69 9999999954 45555543 22333478899988888886322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCc---hHHHHHHHHHHHhcCeEEeCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTL---EGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~---~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
- +++.++.++..+..++.+.+.+.+. ++....+. |+|+|+++........+ ....++.+.++ +.||.++|+..
T Consensus 315 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~ 391 (430)
T 3i4j_A 315 R-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-GLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSG 391 (430)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEC------------CHHHHHHHHH-HTTEECC----
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEeccc
Confidence 1 2223333333334444444444444 34555544 46888887632110000 01134666666 55999999843
Q ss_pred C-CCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 393 F-QCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 393 f-~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ ....++++||+++. .+++++++++++|++++++
T Consensus 392 ~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 392 AEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp -------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 22346789999984 4999999999999999875
No 121
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=7.3e-29 Score=254.28 Aligned_cols=338 Identities=12% Similarity=0.066 Sum_probs=219.2
Q ss_pred CCcccccccccc--cccc---HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAE--NQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+||++.+. |+++ ++.+.+.+.+.-+. + . .-....|++. ...+++++++++++ .+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~------~-~-~~~~~~~~~~-~~~~l~~~la~~~~--------~~ 102 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK------L-A-HAAANDFYNI-PQLELAKKLVTYSP--------GN 102 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT------S-C-CCSCSCSCCH-HHHHHHHHHHHHSS--------CS
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh------C-c-cccccccCCH-HHHHHHHHHHHhCC--------CC
Confidence 345678998776 5552 35566665542110 0 0 0000123321 13455555555543 34
Q ss_pred -CCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccCC--CCcc-
Q 011801 111 -PDRIVMGGGATGANELIMFCLAN-PGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDIS--NNFK- 172 (477)
Q Consensus 111 -~~~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~--~~f~- 172 (477)
+++|++|+|+++|++.+++++.. +||.|++++|+|+++........| .+++.++.+.. ..|+
T Consensus 103 ~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 182 (419)
T 2eo5_A 103 FQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHI 182 (419)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCC
T ss_pred cCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccc
Confidence 78999999999999999987643 489999999999876543221111 24666665421 1112
Q ss_pred -----------cCHHHHH-HHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 173 -----------ITREALE-AAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 173 -----------i~~~~l~-~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+|+++|+ +++++.. ...+++ +++++|+ ||||. +.+++++++|.++|+++|++||+||+|.++.+
T Consensus 183 ~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~ 260 (419)
T 2eo5_A 183 NGYENPSELVNRVIEFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGR 260 (419)
T ss_dssp CTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cccccchhhHHHHHHHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc
Confidence 3678888 8876310 001454 5667886 57896 66888999999999999999999999998655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH-HhcccCCCchHHHHHHHHhcCChh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~-~~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
.+..+ .. +... ....+ .||||.+| +| +|+||++++++.+ .. . .....+.+++++|.++.++|+..
T Consensus 261 ~g~~~-~~-~~~~----~~~d~---~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~- 327 (419)
T 2eo5_A 261 TGKLF-AI-ENFN----TVPDV---ITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV- 327 (419)
T ss_dssp TSSSS-GG-GGGT----CCCSE---EEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHH-
T ss_pred Ccchh-hH-HhcC----CCCCE---EEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH-
Confidence 44321 21 1111 11222 28999999 69 9999999977644 32 2 22233346889999888888542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
+ +..++++++++++.+.|+++ +....+. |+|+|++++... .... +++.++ ++||.++|+.
T Consensus 328 --~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~-g~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv~v~~~~----- 387 (419)
T 2eo5_A 328 --K----DLLPHVNEIGKIFAEELQGL-ADDVRGI-GLAWGLEYNEKK-----VRDR-IIGESF-KRGLLLLPAG----- 387 (419)
T ss_dssp --H----HHHHHHHHHHHHHHHHHTTS-SSEEEEE-TTEEEEECSCHH-----HHHH-HHHHHH-HTTEECEEET-----
T ss_pred --H----HHHHHHHHHHHHHHHHHHHh-hhheEee-eEEEEEEEecCc-----cHHH-HHHHHH-HCCCEEecCC-----
Confidence 2 25677888889999999886 4444444 578889884210 1122 566666 5699999873
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++++||+++. .+++++++++++|++++++
T Consensus 388 -~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 -RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5789998864 4899999999999999865
No 122
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=3.5e-30 Score=261.60 Aligned_cols=338 Identities=14% Similarity=0.091 Sum_probs=212.0
Q ss_pred CCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC----CCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ----DYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++++.|.|+.+.+..+++.+.+.+.+.-... . + .....|. ......++++++|++++ ++
T Consensus 16 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~-~---~----~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~ 79 (400)
T 3vax_A 16 PRGSHMTYLDAAATTRVDQRVADIVLHWMTAE-F---G----NAGSRHEYGIRAKRGVERAREYLASTVS--------AE 79 (400)
T ss_dssp ------CCCCCCCCSSSCHHHHHHHHHHHHHH-H---S----CSSCHHHHHHHHHHHHHHHHHHHHHHTT--------CC
T ss_pred cccCCcEEecCCCCCCCCHHHHHHHHHHHHhc-c---C----CCcccchhHHHHHHHHHHHHHHHHHHcC--------CC
Confidence 34667788877776655555555554421000 0 0 0000111 11224667777777765 56
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----CCCC-eEEEcCCCccchHHHHhh--hCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA----NPGD-AFLVPSPYYAAFDRDLSW--RTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~----~~Gd-~vlv~~P~y~~~~~~~~~--~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
+++|++|+|+++|+.+++.++. ++|| .|+++.+.|+.+...+.. ..|++++.++++. ++.+|+++|+++++
T Consensus 80 ~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 80 PDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLR 157 (400)
T ss_dssp GGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCC
T ss_pred CCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcC
Confidence 7899999999999999999987 8999 999999999987655443 1399999999864 67889999998885
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
+ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+. .... .. + . .. ..+++
T Consensus 158 ~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~~~-~~---~-~----~~-~d~~~ 215 (400)
T 3vax_A 158 P------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGY---GKVP-GD---L-T----TP-IDMIS 215 (400)
T ss_dssp T------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTT---TTSG-GG---G-G----SC-CSEEE
T ss_pred C------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhc---CCCC-cC---h-h----hc-CcEEE
Confidence 4 7899999999999999999 78899999999999999999973 2111 11 1 1 11 44788
Q ss_pred ecCCcccCCCCceEEEEE-eCCHHHH---HHHHH---------hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVY-SFNDTVV---NCGRK---------MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~-~~~~~i~---~~~~~---------~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
.|+||.+|.+| +|+++ ++++.+. ..+.. ....+..+...+.++...+.. ..+.+++.+++++
T Consensus 216 ~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~ 290 (400)
T 3vax_A 216 ISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQ 290 (400)
T ss_dssp EETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHH
T ss_pred EeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 99999887555 67776 6552111 00111 111233555666666555542 2334677888889
Q ss_pred HHHHHHHHHHhhCCCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------
Q 011801 331 KRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT----------- 396 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~----------- 396 (477)
++++++.+.|+..|+++..+.+ +.++++.++.. + ..++.+.+. .||.+++|..|...
T Consensus 291 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 291 DLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-D------AEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp HHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-C------HHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-C------HHHHHHHHh--cCcEEEecccccCCCCCccHHHHHc
Confidence 9999999999844888776654 34667776631 1 124556655 69999999766431
Q ss_pred --C----CCEEEEEe-ccC-CHHHHHHHHHHHHHHHhh
Q 011801 397 --E----PGWFRVCF-ANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 --~----~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. ++++||++ +.. +++++++++++|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 48999999 643 789999999999998764
No 123
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.97 E-value=1.4e-29 Score=257.29 Aligned_cols=285 Identities=12% Similarity=0.112 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC------C-CCeEEEcCCCccchHH-HHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN------P-GDAFLVPSPYYAAFDR-DLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~------~-Gd~vlv~~P~y~~~~~-~~~~~~g~~ 159 (477)
..++++.++++++ +++|++|+|+++|+..++.++.. + ++.|++++|+|++... .+... |.+
T Consensus 84 ~~~l~~~la~~~g----------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~ 152 (397)
T 2ord_A 84 QMELAELLSKNTF----------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQP 152 (397)
T ss_dssp HHHHHHHHHHTTT----------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCH
T ss_pred HHHHHHHHHHhcC----------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CCh
Confidence 3455555555542 57999999999999999988753 5 4789999999976544 44444 655
Q ss_pred ------------EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeE
Q 011801 160 ------------IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIH 226 (477)
Q Consensus 160 ------------~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~ 226 (477)
++.++.+ |+++|++++++ ++++|++++|+||||. +++.+++++|+++|+++|++
T Consensus 153 ~~~~~~~p~~~~~~~~~~~-------d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~ 219 (397)
T 2ord_A 153 KYQKPFEPLVPGFEYFEFN-------NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL 219 (397)
T ss_dssp HHHGGGCSCCTTEEEECTT-------CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCE
T ss_pred hhccccCCCCCCeeEecCC-------CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 6666642 78899888753 7999999999999999 99999999999999999999
Q ss_pred EEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHH
Q 011801 227 LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQT 304 (477)
Q Consensus 227 lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~ 304 (477)
||+||+|+++.+.+.. .++..+ . ...+ + .||||.+| +|+|+||++++++.+ .++. ....+..+++.
T Consensus 220 li~De~~~~~~~~g~~-~~~~~~-~---~~~d-~---~s~sK~~~-~G~r~G~~~~~~~~~--~l~~~~~~~~~~~~~~~ 287 (397)
T 2ord_A 220 LVFDEVQCGMGRTGKL-FAYQKY-G---VVPD-V---LTTAKGLG-GGVPIGAVIVNERAN--VLEPGDHGTTFGGNPLA 287 (397)
T ss_dssp EEEECTTTTTTTTSSS-SHHHHH-T---CCCS-E---EEECGGGG-TTSCCEEEEECSTTC--CCCTTSSCCSSTTCHHH
T ss_pred EEEEecccCCccCccc-hhhhhh-C---CCCC-e---eeeccccC-CCcCeEEEEEchHhc--ccCCCCcCCCCCCCHHH
Confidence 9999999876554432 333222 1 0123 2 28899999 999999999977643 3321 11223467788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
|.++.+.|+..+. ++.+++++++++++.+.|++. ++++. .+..|.|+|++++... ...++++.++
T Consensus 288 ~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~ 356 (397)
T 2ord_A 288 CRAGVTVIKELTK-----EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV------SNREVATKCF 356 (397)
T ss_dssp HHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH------HHHHHHHHHH
Confidence 8888777754221 234566677777777777665 23321 1234578889887421 1225667666
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ +||.+.||. ++++|++++. .+++++++++++|++++++
T Consensus 357 ~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 357 E-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp H-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 5 699999872 6789999753 4999999999999998863
No 124
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.97 E-value=5.7e-29 Score=253.30 Aligned_cols=344 Identities=16% Similarity=0.185 Sum_probs=228.3
Q ss_pred CCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHH
Q 011801 14 GEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQ 93 (477)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ 93 (477)
..+--||+|-- .+.|-.+ -.++|||+.++++++ +.+.+.+.+.. .. ..|.+..+..++++
T Consensus 11 ~~~~~~~~~~~--~~~~~~~---~~~~id~~~~~~~~~-~~v~~a~~~~~-------------~~-~~y~~~~~~~~l~~ 70 (399)
T 2oga_A 11 SSENLYFQGHM--SSRAETP---RVPFLDLKAAYEELR-AETDAAIARVL-------------DS-GRYLLGPELEGFEA 70 (399)
T ss_dssp ------------------CC---CBCSCCHHHHHHHTH-HHHHHHHHHHH-------------HH-TCCSSSHHHHHHHH
T ss_pred cccceeeccCc--ccccccc---cCcccccCcCCCCCC-HHHHHHHHHHH-------------hc-CCCCCchhHHHHHH
Confidence 34445787642 2222121 135799999988776 44555554420 11 25655567899999
Q ss_pred HHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc
Q 011801 94 AVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK 172 (477)
Q Consensus 94 aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~ 172 (477)
++|++++. +++++++|+++|+..++.++ +++||.|+++.|+|+++...++.. |++++.+++++ +++.
T Consensus 71 ~la~~~~~----------~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~ 138 (399)
T 2oga_A 71 EFAAYCET----------DHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSAT-GATPVPVEPHE-DHPT 138 (399)
T ss_dssp HHHHHTTS----------SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCS-SSSS
T ss_pred HHHHHHCC----------CeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHC-CCEEEEEecCC-CCCC
Confidence 99999861 25777888899999999999 899999999999999998888876 99999999874 3578
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCcccHHHhhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKFTSVAEVIQ 251 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~~s~~~~~~ 251 (477)
+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+||+|+.. .++.. ...
T Consensus 139 ~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~---- 199 (399)
T 2oga_A 139 LDPLLVEKAITP------RTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---RIG---- 199 (399)
T ss_dssp BCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---ETT----
T ss_pred cCHHHHHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---ecc----
Confidence 999999988753 677766 5789999988 888899999999999999999853 22221 110
Q ss_pred hccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhccc--------------CCCchHHHHHHHHhcCCh
Q 011801 252 EMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--------------GLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 252 ~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--------------~~vs~~~q~~~~~~L~~~ 315 (477)
.. ..+++.|+ ||.+|.+| |+||++++++.+.+.++..... +.++.+.+.++...++..
T Consensus 200 ----~~-~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~ 273 (399)
T 2oga_A 200 ----AG-SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL 273 (399)
T ss_dssp ----CT-TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH
T ss_pred ----cc-cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH
Confidence 00 13778898 79999779 9999999766665555443221 124556655555555432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
++..++.++..+++.+.|.++ |+++. .+..+.++|+.++-... +..++.+.+. +.||.++++...
T Consensus 274 -------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gI~v~~~~~~ 340 (399)
T 2oga_A 274 -------DSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHLD-ARGIDTLTHYPV 340 (399)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHHH-HTTBCCBCSCSS
T ss_pred -------HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHHH-HCCCceecCCCC
Confidence 222334445567788888876 76654 24456666644432111 1124555554 569999875321
Q ss_pred CC--------------CC-------CCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 394 QC--------------TE-------PGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 394 ~~--------------~~-------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. .- .+++||++.. .++++++.++++|++++++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 341 PVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 00 00 2689999965 49999999999999998764
No 125
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=1.2e-28 Score=249.10 Aligned_cols=297 Identities=11% Similarity=0.048 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEecc
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCD 166 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~ 166 (477)
.+.++++++..+..| .. +++++++++|+++|+..++.++ +||.|+++.|+|+++.. .++.. |++++.+
T Consensus 58 ~~~~~~~~~~a~~~g--~~-~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~-g~~~~~v--- 128 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLG--GD-ENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIV-NAKYFES--- 128 (374)
T ss_dssp HHHHHHHHHHHHHHT--CC-TTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE---
T ss_pred HHHHHHHHHHHHHhC--CC-CcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHc-CcEEEEe---
Confidence 344555555544433 11 3578999999999999999988 99999999999887544 45555 9998877
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeE-EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc-c
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKG-LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF-T 244 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~-vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~-~ 244 (477)
.|+++++++ . .++++ |++++|+||||. +..++++|.++|+++|+++|+||+|+.+. .++.. .
T Consensus 129 ------~d~~~l~~~-~------~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~~ 192 (374)
T 2aeu_A 129 ------DKVGEILNK-I------DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARV-RLLFNQP 192 (374)
T ss_dssp ------SCHHHHHTT-C------CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHHTTCC
T ss_pred ------CCHHHHHhc-C------CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccc-ccccccC
Confidence 167777765 2 27899 999999999997 77889999999999999999999998652 11110 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhcCChhh--HHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASMLSDDEF--VDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L~~~~~--~~~ 320 (477)
+.... +.+++++|+||.+ +|+|+||++++++ +.+.++... .++ .++++.|.++...|...+. ++.
T Consensus 193 ~~~~~--------~~di~~~S~sK~l--~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 261 (374)
T 2aeu_A 193 PALKL--------GADLVVTSTDKLM--EGPRGGLLAGKKE-LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRK 261 (374)
T ss_dssp CHHHH--------TCSEEEEETTSSS--SSCSCEEEEEEHH-HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHH
T ss_pred Ccccc--------CCcEEEecCcccc--cCcceEEEEECHH-HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 11111 2347889999986 5789999999654 444444332 232 3677888887777764321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV----GINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.+..+...+++++.+.+.|... |+.+.. +.+.+|.|.+++.... .....+++..+++++||.+.||..|.
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~- 337 (374)
T 2aeu_A 262 AFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP- 337 (374)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC-
Confidence 11111111122256666667653 566544 4555555655543211 11223466677888899999998773
Q ss_pred CCCCEEEEEeccCC--HHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANMD--DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~--~e~l~~~l~~l~~~~~~ 426 (477)
..++++||+++..+ +++++++++.|++++++
T Consensus 338 ~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 338 GASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 34678999997532 33477778887777765
No 126
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=5.7e-29 Score=252.34 Aligned_cols=325 Identities=16% Similarity=0.136 Sum_probs=221.9
Q ss_pred CCCcccccccccccccc----HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAENQLC----FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+.+..+ .+.+.+.+.+...... .....|+ ..-..++++.++++++
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g---------- 92 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT---------LTSRAFH-SDQLGPWYEKVAKLTN---------- 92 (392)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-ETTHHHHHHHHHHHHT----------
T ss_pred CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcc---------ccccccC-CHHHHHHHHHHHHhcC----------
Confidence 34556899987765432 4555555544211000 0001132 2235778888887764
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCC----------CCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANP----------GDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~----------Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~ 168 (477)
++++++|+|+++|++.++..+..+ +|.|+++.|+|+++...+....+. .+..++.+
T Consensus 93 ~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (392)
T 3ruy_A 93 KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-- 170 (392)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT--
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc--
Confidence 679999999999999999877543 689999999998765444332121 23444321
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDT-LKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~-l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+++|+++++. ++++|++++|+||||.+++.++ +++|.++|+++|+++|+||+|+++.+.+..+ ...
T Consensus 171 -----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~ 238 (392)
T 3ruy_A 171 -----DLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACD 238 (392)
T ss_dssp -----CHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGG
T ss_pred -----cHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhh
Confidence 78999988863 8999999999999999996666 9999999999999999999998765554432 211
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
... ....+ .||||.++ +| +|+||++++++ +.+.+.... ..+..+++.+.++...|+..+ . ++
T Consensus 239 -~~~----~~~d~---~~~SK~l~-gG~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~ 303 (392)
T 3ruy_A 239 -WDN----VTPDM---YILGKALG-GGVFPISCAAANRD-ILGVFEPGSHGSTFGGNPLACAVSIAALEVLE---E--EK 303 (392)
T ss_dssp -GGT----CCCSE---EEECGGGG-TTTSCCEEEEECHH-HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred -ccC----CCCCE---EEEchhhh-CChhhhEEEEECHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--hh
Confidence 111 11222 37789986 57 99999999554 433333221 223467888888888886432 1 45
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 325 TSKRLAKRHHNFTKGLEQVG---INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~g---i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
..++++++++++.+.|++++ +....+.+ .|+++.++. . ..++++.+. ++||.++||+ ++++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-~~~~~~~~~--~------~~~l~~~l~-~~gi~v~~~~------~~~i 367 (392)
T 3ruy_A 304 LTERSLQLGEKLVGQLKEIDNPMITEVRGKG-LFIGIELNE--P------ARPYCEQLK-AAGLLCKETH------ENVI 367 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTEEEEEEET-TEEEEEESS--C------SHHHHHHHH-TTTEECCCBT------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeee-eEEEEEEcc--h------HHHHHHHHH-HCCcEEecCC------CCEE
Confidence 67788888899999999875 34444554 466666764 1 124666665 6799999874 6799
Q ss_pred EEEeccC-CHHHHHHHHHHHHHHH
Q 011801 402 RVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 402 Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
|++++.. +++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 9996543 8999999999999876
No 127
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=2.6e-28 Score=245.71 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=201.7
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEeccC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~~~~ 167 (477)
++.+++++++.+..| ++.+.+.+++|+|+++|+++++.++.++||.|++++|.|.+.. ..+... |.+++.++++.
T Consensus 52 ~~~~~~~~~la~~~g--~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 128 (376)
T 3f0h_A 52 STMLENEKFMLEYAK--APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIH-EIPYVALKLEH 128 (376)
T ss_dssp HHHHHHHHHHHHHHT--CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhC--CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEeCCC
Confidence 444444444444333 2222244556999999999999999999999999998765543 234444 99999998763
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
++.+|+++|++++. .++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ... ..+.
T Consensus 129 --~~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~---~~~-~~~~ 193 (376)
T 3f0h_A 129 --GKKLTKEKLYEYDN------QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFL---ADP-FNMN 193 (376)
T ss_dssp --TCCCCHHHHHTTTT------SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHH
T ss_pred --CCCCCHHHHHHhhc------cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCcccc---Ccc-cccc
Confidence 57899999988653 37899999999999999999 888999999999999999999843 211 1222
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHh--cc-----------------cCCCchHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKM--SS-----------------FGLVSSQTQYL 307 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~--~~-----------------~~~vs~~~q~~ 307 (477)
.. +..+++.|+||.+| .+| +|+++++++. .+.+... .+ ....+...+.+
T Consensus 194 ~~--------~~d~~~~s~~K~l~~~~G--~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (376)
T 3f0h_A 194 EC--------GADVMITGSQKVLACPPG--ISVIVLAPRG-VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ 262 (376)
T ss_dssp HH--------TCSEEEEETTTTTCCCSS--CEEEEECHHH-HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred cc--------CccEEEecCcccccCCCc--eEEEEECHHH-HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence 11 33478899999998 566 6778885554 3333321 11 11233333233
Q ss_pred HHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc--eEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 308 LASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVGINCLKSNA--GLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 308 ~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~--g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
+...+.. +.+ .+++..++++++++++.+.|++.|+++..+.. +++.+. +...+ ..++.+.+.++.
T Consensus 263 ~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~l~~~l~~~~ 331 (376)
T 3f0h_A 263 INERLKE---IKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH--PTTAN------AYDIFLKLKDEY 331 (376)
T ss_dssp HHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE--ESSSC------HHHHHHHHHHHS
T ss_pred HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe--CCCCC------HHHHHHHHHHhC
Confidence 3333321 111 35677788888899999999988877665432 233322 21111 125677777766
Q ss_pred CeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
||.++||. +...++++|++++. .+++++++++++|++++++
T Consensus 332 gi~v~~g~--~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 332 GIWICPNG--GEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SEECEECC--GGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEecCc--cccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999983 33346799999975 4999999999999999875
No 128
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=5.4e-29 Score=255.83 Aligned_cols=333 Identities=15% Similarity=0.089 Sum_probs=215.9
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCC---------CcHHHHHHHHHHHhcccCCCCc
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH---------GLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---------G~~~lr~aia~~~~~~~g~~~~ 108 (477)
.+.+.|+.+.+..+++.+.+.+.+.- .....|+... ...++|+++|++++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-------- 75 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAM-------------KEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-------- 75 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHH-------------HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHH-------------HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 45688888777665566666555421 1112233211 13689999999986
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccch-----------------HHHHhhhCCcEEEEE
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAF-----------------DRDLSWRTGVQIVPV 163 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~-----------------~~~~~~~~g~~~~~v 163 (477)
+++++|++|+|+++|+.+++.++. ++||.|+++.|+|+++ ...++.. |.+++.+
T Consensus 76 ~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~-g~~v~~v 154 (432)
T 3a9z_A 76 GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ-VAEVTFV 154 (432)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT-SCEEEEE
T ss_pred CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 467899999999999999999886 5899999999999875 2222334 8999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC----------eEEEecccc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN----------IHLVCDEIY 233 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~----------~~lI~De~y 233 (477)
+++. .++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++++ ++||+||+|
T Consensus 155 ~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~ 224 (432)
T 3a9z_A 155 PVSK-VNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQ 224 (432)
T ss_dssp CCCT-TTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT
T ss_pred ecCc-ccCCcCHHHHHHhccC------CceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchh
Confidence 9864 2457899999988753 7899999999999999999 566788888998 999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH---------HhcccCCCchHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR---------KMSSFGLVSSQT 304 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~---------~~~~~~~vs~~~ 304 (477)
+.. ... .++... ..+ +++.|+||.+| .|+||++++++.....+. .....++.+...
T Consensus 225 ~~~---~~~-~~~~~~------~~d--~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (432)
T 3a9z_A 225 ALG---KRR-VDVEDL------GVD--FLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPM 289 (432)
T ss_dssp TTT---TSC-CCHHHH------CCS--EEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHH
T ss_pred hhC---Ccc-cChhhc------CCC--EEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHH
Confidence 742 111 233322 223 56889999875 469999997653111111 111123466677
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe--cC-----CceEEEEeeccchhhccCchHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL--KS-----NAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~--~~-----~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+.++.+++.. .+.++++..++++++++++.+.|+++ |+.+. .+ ..+..+++.++... ... .++.
T Consensus 290 ~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~ 361 (432)
T 3a9z_A 290 IAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----LRG-YMVL 361 (432)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----CCH-HHHH
T ss_pred HHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----CcH-HHHH
Confidence 7776666643 23356778888899999999999885 65443 22 12334555555310 011 1233
Q ss_pred HHHHHhcCeEEeCCCCCCCC------------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCT------------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~------------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+ .||.+.+|..|... .++++||+++.. +++++++++++|++++++.+
T Consensus 362 ~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 362 AQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp HHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 322 38888888766431 137999999865 79999999999999987643
No 129
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=1.3e-28 Score=250.77 Aligned_cols=333 Identities=13% Similarity=0.098 Sum_probs=220.8
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. +.+. .+.+.+.+.+.-.. . ......|++ ....++++.++++++
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~------~---~~~~~~~~~-~~~~~l~~~la~~~~---------- 95 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASK------F---WHTGNGYTN-EPVLRLAKKLIDATF---------- 95 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT------C---SCCCTTSCC-HHHHHHHHHHHHHSS----------
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHh------c---ccccCCcCC-HHHHHHHHHHHhhCC----------
Confidence 3455678988763 4442 45555555442110 0 000112322 224556666666543
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~ 170 (477)
.++|++|+|+++|+++++.++.. +| |.|++++|+|+++...+....+ .++..++.
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY----- 170 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----
Confidence 45999999999999999998764 66 9999999999988655444322 24444443
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
.|+++|+++++. ++++|+++ |+||||.++ +.+++++|+++|+++|++||+||+|+++.+.+..+ +...
T Consensus 171 --~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~ 240 (406)
T 4adb_A 171 --NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMH 240 (406)
T ss_dssp --TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHH
T ss_pred --CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHh
Confidence 368888887753 78888888 999999998 99999999999999999999999999765555432 2221
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
. . ....++ ||||.+| +|+|+||++++++ +.+.+.... .....+++.|.++.+.|+..+. ++..
T Consensus 241 ~-~----~~~d~~---t~sK~~~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~ 305 (406)
T 4adb_A 241 Y-G----VTPDLL---TTAKALG-GGFPVGALLATEE-CARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PEML 305 (406)
T ss_dssp H-T----CCCSEE---EECGGGG-TTSCCEEEEECHH-HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HHHH
T ss_pred c-C----CCCCEE---Eechhhc-CCCCeEEEEEcHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cCHH
Confidence 1 1 122232 7799999 9999999999554 444333221 2234677888888877753221 2344
Q ss_pred HHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 327 KRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
++++++++++.+.|++.+ ........|+++|+.++.... ....++++.+.++ ||.+.|+. ++++|
T Consensus 306 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~v~~~~------~~~iR 374 (406)
T 4adb_A 306 NGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAAKA-GVMVLIAG------GNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHHHT-TEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHHHC-CcEEeecC------CCeEE
Confidence 556666666766666542 211223346789999875320 1123567777655 99999863 67999
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++. .+++++++++++|++++++..
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 97654 389999999999999997654
No 130
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.96 E-value=4.2e-29 Score=253.56 Aligned_cols=327 Identities=14% Similarity=0.092 Sum_probs=218.1
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.++ |++ +++.+.+.+.+.-.. .+ .....| +.....+++++++++++ .++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~-----~~----~~~~~~-~~~~~~~l~~~la~~~~--------~~~ 104 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET-----LM----AMPQTL-PTPMRGEFYRTLTAILP--------PEL 104 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH-----CC----CCCTTS-CCHHHHHHHHHHHHTSC--------TTE
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHh-----CC----CCcccc-CCHHHHHHHHHHHHhcC--------CCc
Confidence 345678998776 444 345555555442100 00 001123 22245667777776653 357
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchH-HHHhhhCCcE------------EEEEeccCCCCcccCHH
Q 011801 112 DRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFD-RDLSWRTGVQ------------IVPVHCDISNNFKITRE 176 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~-~~~~~~~g~~------------~~~v~~~~~~~f~i~~~ 176 (477)
++|++|+|+++|+.+++.++. .+||.|++++|+|++.. ..+... |.+ +..++. .|++
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~-------~d~~ 176 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPY-------NDVE 176 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTC-CCHHHHGGGCSCSSCEEEECT-------TCHH
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhc-CCcccccccCCCCCCeeEeCC-------CcHH
Confidence 899999999999999998763 57899999999997654 344433 654 333331 3789
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
+|++++++ ++++|+++.++||||.++ +.+++++|.++|+++|++||+||+|+++.+.+.. .++. ... .
T Consensus 177 ~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~-~~~~-~~~---~ 245 (395)
T 1vef_A 177 ALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR-FAFE-HFG---I 245 (395)
T ss_dssp HHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHH-HHT---C
T ss_pred HHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch-hHhh-hcC---C
Confidence 99888753 788777655578999875 6888999999999999999999999974333332 1221 111 0
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
..+ + + ||||.++ +|+|+||++++++ +.+.+.. .......+.+.|.++...|+..+ . .+..+++++++
T Consensus 246 ~~d-~-~--s~sK~~~-~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~--~~~~~~~~~~~ 314 (395)
T 1vef_A 246 VPD-I-L--TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R--TRLWERAAELG 314 (395)
T ss_dssp CCS-E-E--EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--HTTHHHHHHHH
T ss_pred CCC-E-E--EEccccc-CCCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHH
Confidence 122 2 2 8899999 5999999999665 4443332 11222367778877777775322 1 23456777888
Q ss_pred HHHHHHHhhCCCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 334 HNFTKGLEQVGINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 334 ~~l~~~L~~~gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
+++.+.|++++.++ ..+..|+|+|++++.. ..++++.+++++||.+.|+ +++++||+++. .++
T Consensus 315 ~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~ 380 (395)
T 1vef_A 315 PWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEK 380 (395)
T ss_dssp HHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHHCEECEES------STTEEEECCCTTCCH
T ss_pred HHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCH
Confidence 88999998875421 1233567899988741 1246777774669999986 26799999864 489
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 381 ~~i~~~~~~l~~~l 394 (395)
T 1vef_A 381 EDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 131
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.96 E-value=3.3e-29 Score=250.79 Aligned_cols=328 Identities=12% Similarity=0.130 Sum_probs=215.3
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
..+-++.++|++++ +.+.+.+.+. . ....|.+..+..++++++|++++ . +..+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~-------------~-~~~~~~~~~~~~~l~~~la~~~~--------~--~~~i~~ 69 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDN-------------L-ESDIYGNGAVIEDFETKIAKILG--------K--QSAVFF 69 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTT-------------C-BCCBTTBSHHHHHHHHHHHHHHT--------C--SEEEEE
T ss_pred chhhcCCCccccCCCHHHHHHHHhh-------------c-ccCcccCCHHHHHHHHHHHHHhC--------C--CcEEEe
Confidence 34556777888853 4444443331 1 12346656678999999999986 1 233555
Q ss_pred CChHHHHHHHHHHhcCCCCe--EEEcCCCccchHH--HH-hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 118 GGATGANELIMFCLANPGDA--FLVPSPYYAAFDR--DL-SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~--vlv~~P~y~~~~~--~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|+++|+.+++.++..+||. |+++.++|..+.. .. ... |.++++++. +++.+|+++|+++ . .++
T Consensus 70 ~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~---~~~~~d~~~l~~~-~------~~~ 138 (359)
T 3pj0_A 70 PSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ-QITPLLLGT---ANQLLTIDDIKSL-R------EPV 138 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHH-CCEEEECSC---TTSCCCHHHHHTC-S------SCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhc-CceEEecCC---cCCCcCHHHHHhc-c------CCc
Confidence 78889999999999888887 5556565543321 12 345 999988875 3568999999876 2 378
Q ss_pred eEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 193 KGLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
++|+++||+||+ |.+++.+++++|+++|+++|++||+|++|......... .+...+.. ..+ +++.|+||.++
T Consensus 139 ~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~----~~d--~~~~s~sK~~~ 211 (359)
T 3pj0_A 139 SSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQ-KSAEEICA----LFD--SVYVSFYKGIG 211 (359)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHT-CCHHHHHT----TCS--EEEEESSSTTC
T ss_pred eEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhC-CCHHHhhc----cCC--EEEEeccccCC
Confidence 999999999998 79999999999999999999999999998643211100 12222221 223 45569999988
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhc-ccC-CC--chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMS-SFG-LV--SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~-~~~-~v--s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
.++ . ||+++++ .+.+.+++.. .++ .. ..+.+.++...+ +... +..+++.++++.+.+.|+++ |++
T Consensus 212 ~~~-g-g~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~-~~~~~~~~~~~~l~~~L~~~~g~~ 281 (359)
T 3pj0_A 212 GIA-G-AILAGND-DFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRI-GKMAEYFEAAKGLAERFNSCSGVK 281 (359)
T ss_dssp CSS-C-EEEEECH-HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHG-GGHHHHHHHHHHHHHHHHTSTTEE
T ss_pred Ccc-e-EEEECCH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHH-HHhHHHHHHHHHHHHHHhhCCCce
Confidence 553 3 7777754 4544444321 111 11 222222222222 2222 22344667788899999988 888
Q ss_pred Ee-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHHH
Q 011801 347 CL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN----MDDDTLQVALNRIA 421 (477)
Q Consensus 347 ~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~----~~~e~l~~~l~~l~ 421 (477)
+. .+..++|+|++++.... ....++.+.+ .++||.++||..|...+.+++|++++. .+.+++++++++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 282 TVPEVPVSNMFHVYFENSAD----EIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp EESSSCSSSEEEEEESSCHH----HHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred eeccCCcceEEEEEecCccc----hhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 75 45566788888763211 1122454544 566999999988876556799998862 37899999999998
Q ss_pred HH
Q 011801 422 AF 423 (477)
Q Consensus 422 ~~ 423 (477)
+.
T Consensus 357 ~~ 358 (359)
T 3pj0_A 357 KE 358 (359)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 132
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.96 E-value=9e-29 Score=247.59 Aligned_cols=324 Identities=12% Similarity=0.077 Sum_probs=214.5
Q ss_pred cccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHH
Q 011801 43 LGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122 (477)
Q Consensus 43 l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~ 122 (477)
++++.++...+.+.+.+..... ......|++..+..+|++++|++++. +..++++|+++
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~-----------~~~~~~y~~~~~~~~l~~~la~~~~~----------~~~i~~~~G~~ 73 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVAD-----------EMASDQYGTGAIIEPFEQKFADVLGM----------DDAVFFPSGTM 73 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCT-----------TCBCEETTEETTHHHHHHHHHHHHTC----------SEEEEESCHHH
T ss_pred cccCCCCCCHHHHHHHHHHhhc-----------ccCcccccCChHHHHHHHHHHHHhCC----------CcEEEecCcHH
Confidence 4555566666666665554210 01124577667889999999999871 23455577788
Q ss_pred HHHHHHHHhcCCCC--eEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 123 ANELIMFCLANPGD--AFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 123 al~~i~~~l~~~Gd--~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+.+++.++..+|| .|+++.++|..+.. ..... |+++++++. .++.+|+++|+++ .++++|++
T Consensus 74 a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~---~~~~~d~~~l~~~--------~~~~~v~~ 141 (357)
T 3lws_A 74 AQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH-PIETILVGA---ADRLMTLDEIKAL--------PDIACLLL 141 (357)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS-SCEEEECSC---TTSCCCHHHHHTC--------CSCSEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc-CcEEEEecC---CCCCcCHHHHhcC--------cCcceEEE
Confidence 99999999988888 67777776543332 23334 888888874 3457999998876 14889999
Q ss_pred eCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEeccccccc--ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 198 TNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT--VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 198 ~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++|+||| |.+++.+++++|+++|+++|++||+||+|... .+.+. +...+.. ..+ +++.|+||.++.++
T Consensus 142 ~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~----~~d--~~~~s~sK~~~~~~ 212 (357)
T 3lws_A 142 ELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK---TAAEIAG----LFD--SIYISFYKGLGGIA 212 (357)
T ss_dssp ESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CHHHHHT----TSS--EEEEESSSTTCCSS
T ss_pred EcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC---ChHHHHh----cCC--EEEEeccccCCCCc
Confidence 9999998 99999999999999999999999999998621 11122 2222322 223 34789999994343
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-ccC-C--CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-SFG-L--VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL- 348 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~~~-~--vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~- 348 (477)
. ||++++++ +.+.+.+.. .++ . ...+.+.++...|.+ +.+. .+++.++++.+.+.|+++ |+++.
T Consensus 213 g--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~ 282 (357)
T 3lws_A 213 G--AILAGPAA-FCQTARIWKRRYGGDLISLYPYIVSADYYYEL------RKDR-MGQYYEQAKQLAEQFNALPGVHTTP 282 (357)
T ss_dssp C--EEEEECHH-HHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH------HTTC-HHHHHHHHHHHHHHHHTSTTEEEES
T ss_pred e--EEEEcCHH-HHHHHHHHHHHhcCCcccchHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHhCCCCeecc
Confidence 2 99998554 444443322 121 1 123333333333322 2222 233566778899999988 88874
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN----MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~----~~~e~l~~~l~~l~~~~ 424 (477)
.+.+++|+|++++.... ....++.+. +.++||.++||..|. .+.+++|++++. .+++++++++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~-l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 283 EVPVSNMFHLHFDGQAA----DISPKLEQV-QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSCSSSEEEEEEESCHH----HHHHHHHHH-HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CCCcceEEEEEecCChH----HHHHHHHHH-HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 46677899999975210 111244444 456699999997665 234599999863 37899999999998764
No 133
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.96 E-value=5.7e-28 Score=245.89 Aligned_cols=281 Identities=16% Similarity=0.169 Sum_probs=197.2
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~ 161 (477)
.+..++++.++++++ . ++.++++++++|+..++.++.++||.|+++.|+|+++...+ +.. |.+++
T Consensus 64 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~ 132 (398)
T 2rfv_A 64 PTTDALEKKLAVLER--------G--EAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVR 132 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHc-CCEEE
Confidence 356788888888875 2 25556666679999999999999999999999999887765 555 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...+..
T Consensus 133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 195 (398)
T 2rfv_A 133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ- 195 (398)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 98863 68888888753 7899999999999999998 8899999999999999999998654421
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-ccc--CCCchHHHHHHHHhcCChhh
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSF--GLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~--~~vs~~~q~~~~~~L~~~~~ 317 (477)
.. . .+.++++.|+||.++.||.|+ ||++++++.+...++.. ..+ +..+++.|+++...|+..
T Consensus 196 ---~~-~--------~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 261 (398)
T 2rfv_A 196 ---PL-Q--------LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL-- 261 (398)
T ss_dssp ---GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH--
T ss_pred ---ch-h--------hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH--
Confidence 11 1 145688899999999899998 99999766554344332 222 357788888888888753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC---------------CeEecC---CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVG---------------INCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~g---------------i~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
..++ +++.++.+.+.+.|++.+ +++..+ ..|.+++++++... +....+
T Consensus 262 -~~~~----~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~l 327 (398)
T 2rfv_A 262 -GIRM----ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL---------EAGRRM 327 (398)
T ss_dssp -HHHH----HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH---------HHHHHH
T ss_pred -HHHH----HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH---------HHHHHH
Confidence 2222 233444455556665432 222222 23456666887420 112334
Q ss_pred HHhc---CeEEeCCCCCC----C-----------------CCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 380 VNDV---KLNVSPGSSFQ----C-----------------TEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 380 l~~~---gI~v~pg~~f~----~-----------------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+++. |+.+++|+.|. | ..++++|++++.. ++++++.+++.|++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 4433 88888887652 1 1268999999874 56666666666654
No 134
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=3e-28 Score=243.49 Aligned_cols=287 Identities=9% Similarity=0.072 Sum_probs=204.3
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-hHHHHhhhCCcEEEEEeccCC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA-FDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~~~~g~~~~~v~~~~~ 168 (477)
++.+.+.+.+.+..| + .++++|++|+|+++|+.+++.++.++ +.+++..|+|.. +...++.. |++++.++.+
T Consensus 43 ~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~-g~~~~~v~~~-- 115 (362)
T 3ffr_A 43 EVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGEL-GREAYKEEAA-- 115 (362)
T ss_dssp HHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHT-TCEEEEEECC--
T ss_pred HHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHh-CCCeEEEecC--
Confidence 444444444444433 1 14678999999999999999999888 666666667763 23345555 9999999975
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-CeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK-NIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~-~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.++.+|+++|+ + +.++|+|++++|+||||.+++ +++|.++|+++ |+++|+|++|+.. ..+ ...
T Consensus 116 ~~~~~d~~~l~--~------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~---~~~-~~~- 179 (362)
T 3ffr_A 116 FGKGFYPADIT--V------PADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLP---YPK-FDW- 179 (362)
T ss_dssp TTCCCCGGGCC--C------CTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTT---SSC-CCT-
T ss_pred CCCCCCHHHHh--c------cCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccC---Ccc-cCh-
Confidence 35788999988 2 348999999999999999999 77788899999 9999999999732 211 110
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc-----------------------cCCCchH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS-----------------------FGLVSSQ 303 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~-----------------------~~~vs~~ 303 (477)
. +..+++.|+||.++ .+| +|+++++++.+ +.+..... .++.+..
T Consensus 180 --------~-~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (362)
T 3ffr_A 180 --------T-KIDSVFFSVQKCFGLPAG--LGVWILNDRVI-EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAM 247 (362)
T ss_dssp --------T-SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHH
T ss_pred --------h-HCcEEEEecccccCCCCc--eEEEEECHHHH-HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHH
Confidence 1 13478899999998 777 57777755443 33332221 4456666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----CceEEEEeeccchhhccCchHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+.++...+.... +..+++..++++++++++.+.|+++ |+++..+ ..+.++|+.++. + ..++.+.
T Consensus 248 ~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~ 317 (362)
T 3ffr_A 248 NIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--L------PGEINKI 317 (362)
T ss_dssp HHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--C------HHHHHHH
T ss_pred HHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--C------HHHHHHH
Confidence 6666666654211 1125667778888999999999998 8877652 245678888874 1 1256666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
+.++ ||.+++|.. +..++++||+++.. +++++++++++|++++
T Consensus 318 l~~~-gi~~~~g~~--~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 318 LEPF-DMAVGAGYG--SKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HGGG-TEEEEECSG--GGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHC-CeEEecCcc--ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6655 999999844 34578999999764 8999999999998864
No 135
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.96 E-value=8.7e-28 Score=249.40 Aligned_cols=321 Identities=15% Similarity=0.239 Sum_probs=218.1
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC----CCCe---EEEcCCCccchHHHHh
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN----PGDA---FLVPSPYYAAFDRDLS 153 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~----~Gd~---vlv~~P~y~~~~~~~~ 153 (477)
.|.+..+..+|+++++++++ .++|++|+|+++|+.+++.++.+ +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57666688999999999986 26899999999999999999988 9998 9999777777776777
Q ss_pred hhCCcEEEEEeccC---C-----CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcC
Q 011801 154 WRTGVQIVPVHCDI---S-----NNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 154 ~~~g~~~~~v~~~~---~-----~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~ 224 (477)
.. |.+++.++.+. . .++.+|+++|++++++.. ..++++|++++|+||| |.+++.+++++|+++|++||
T Consensus 141 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cc-CCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 66 88888776432 1 134689999999997531 1268999999999999 89999999999999999999
Q ss_pred eEEEecccccc--c--------ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCH-HHHHHHH
Q 011801 225 IHLVCDEIYAA--T--------VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFND-TVVNCGR 292 (477)
Q Consensus 225 ~~lI~De~y~~--~--------~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~-~i~~~~~ 292 (477)
++||+||++.. . .+.+ .++.++..+.....+ +++.|+||.+|++ | |+++++++ .+.+.+.
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~ 289 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKN---ATIKEVIFDMYKYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTLAR 289 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT---CCHHHHHHHHGGGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHHHH
T ss_pred CEEEEEchhhhhcchhccccccccCC---Cchhhhhhhhccccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHHHH
Confidence 99999998652 1 1222 233332210000123 4568999999876 4 78888744 4544433
Q ss_pred Hhc-------ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccch--
Q 011801 293 KMS-------SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-- 363 (477)
Q Consensus 293 ~~~-------~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~-- 363 (477)
... .++..+...+.+++..+....- ++.+++ ..++++.+.+.|.+.|+++..+.+|+++|+++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (467)
T 1ax4_A 290 QRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHY----RIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVP 364 (467)
T ss_dssp HHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHH----HHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCT
T ss_pred hhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHH----HHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhcc
Confidence 221 2222333333322222321100 112222 22456778888877788877788899999994221
Q ss_pred -hhccCchHHHHHHHHHHHhcCeEEeC-CCCC-CC---------CCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhhh
Q 011801 364 -LKEKTLEGEIALWRTIVNDVKLNVSP-GSSF-QC---------TEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 364 -~~~~~~~~e~~l~~~ll~~~gI~v~p-g~~f-~~---------~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.....+. ..+++..++.+.||.+.| |+.| +. ...+++||+++. .+++++++++++|++++++.+
T Consensus 365 ~~~~~~~~-~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 365 QIPGDQFP-AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp TSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccccCCCC-HHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 1101111 235777776778999999 6432 11 013799999983 589999999999999987643
No 136
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.96 E-value=9.5e-28 Score=248.38 Aligned_cols=356 Identities=10% Similarity=0.037 Sum_probs=218.9
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+ .+.++ ++.+.+.+.+.-+ ... +....+..+.++++++++.+..+ .+
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~~-~~~~~~~~~~~~~la~~l~~~~~----~~ 107 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-------------TLS-YFPMSQSHEPAIKLAEKLNEWLG----GE 107 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-------------TCC-CCCTTSEEHHHHHHHHHHHHHHT----SC
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hcC-CcccccCCHHHHHHHHHHHHhCC----CC
Confidence 445668999876 45553 4556665554211 111 11122344566666666655433 23
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-----C---CCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA-----N---PGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-----~---~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (477)
.+ |++|+|+++|++.+++++. . +++.|++.+|+|+++........|. .+..++....-.
T Consensus 108 ~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (452)
T 3n5m_A 108 YV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYR 186 (452)
T ss_dssp EE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTT
T ss_pred ce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcccc
Confidence 44 9999999999999999876 5 7899999999999876443332121 133333211101
Q ss_pred ccc-C---------HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 171 FKI-T---------REALEAAYERAQEASINIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 171 f~i-~---------~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+.. | +++|++++++. ...++++|+++.+ +| ||.++ +++.+++|.++|++||++||+||+|.++..
T Consensus 187 ~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 187 MPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp STTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 111 1 78999888631 1226777777766 79 99766 888899999999999999999999998655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH--------hcccCCCchHHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--------MSSFGLVSSQTQYLLA 309 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--------~~~~~~vs~~~q~~~~ 309 (477)
.+..+ .. +.. +..++ +.+|||.+| .| +|+||+++++ .+.+.+.. ....+..+++++.++.
T Consensus 264 ~g~~~-~~-~~~---~~~~d----i~t~sK~l~-~G~~~ig~~~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 332 (452)
T 3n5m_A 264 TGKAF-GF-MNY---DVKPD----IITMAKGIT-SAYLPLSATAVKR-EIYEAFKGKGEYEFFRHINTFGGNPAACALAL 332 (452)
T ss_dssp TSSSS-GG-GGT---TCCCS----EEEECGGGG-TTSSCCEEEEEEH-HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHH
T ss_pred ccccc-hh-hhc---CCCCC----EEeeccccc-CCCcceEEEEECH-HHHHHHhhccCCCCccccCCCCCCHHHHHHHH
Confidence 55432 11 111 11222 337899998 59 9999999954 45444422 1122346788888888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhcc-Cc--hHHHHHHHHHHHhcCe
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEK-TL--EGEIALWRTIVNDVKL 385 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~-~~--~~e~~l~~~ll~~~gI 385 (477)
+.|+..+- ++.+++.++..+..++.+.+.+.+++ +....+ .|+|+++++....... .+ ....++++.+++ .||
T Consensus 333 aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv 409 (452)
T 3n5m_A 333 KNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGL 409 (452)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCc
Confidence 77763211 11223222222333333433334443 333444 4567788775321111 01 111245666664 599
Q ss_pred EEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.|+..|....++++||+++.. +++++++++++|++++++
T Consensus 410 ~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 410 IIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp ECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999887666678999987654 999999999999999864
No 137
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.96 E-value=3.6e-28 Score=249.29 Aligned_cols=331 Identities=13% Similarity=0.106 Sum_probs=215.5
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. ++++ .+.+.+.+.+.-+ ....+.. .+..++++++++.+.+..|
T Consensus 54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~-------------~~~~~~~-~~~~~~~~~l~~~la~~~g------ 113 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGE-------------TLWHTSN-VFTNEPALRLGRKLIDATF------ 113 (420)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-------------TCCCCCT-TSCCHHHHHHHHHHHHHSS------
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hcccccC-ccCCHHHHHHHHHHHhhCC------
Confidence 3455688997763 5553 4556665554211 1111110 0123445555555544333
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (477)
+++|++|+|+++|++.++.++.. +| +.|++++|+|+++...+....|.+ +..++.
T Consensus 114 ~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----- 188 (420)
T 2pb2_A 114 AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF----- 188 (420)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----
Confidence 57999999999999999998765 67 499999999987754432222433 444543
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
.|+++|++++++ ++++|+++.++|++|. +++.+++++|.++|+++|++||+||+|.++.+.+..+ +. +.
T Consensus 189 --~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~-~~ 258 (420)
T 2pb2_A 189 --NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AY-MH 258 (420)
T ss_dssp --TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HH-HH
T ss_pred --CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HH-Hh
Confidence 278899888753 7898888877888884 6999999999999999999999999998765544332 21 11
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
.. ..++ ++ ||||.+| +|+|+||++++++ +.+.+.. .......++++|.++.+.|+..+. ++..+
T Consensus 259 ~~---~~~d-ii---t~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~~~ 324 (420)
T 2pb2_A 259 YG---VTPD-IL---TSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEVLQ 324 (420)
T ss_dssp HT---CCCS-EE---EECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHHHH
T ss_pred cC---CCCC-eE---Eeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccHHH
Confidence 11 1223 22 7899999 9999999999665 4433322 112223678888887776653221 12344
Q ss_pred HHHHHHHHHHHHHhhC----C-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 328 RLAKRHHNFTKGLEQV----G-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~----g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
+++++++++.+.|+++ . +....+ .|+|+|++++.... ....++++.+++ +||.+.|+. ++++|
T Consensus 325 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~l~~~l~~-~Gi~v~~~~------~~~iR 392 (420)
T 2pb2_A 325 GIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLLIGAELKPKYK----GRARDFLYAGAE-AGVMVLNAG------ADVMR 392 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECGGGT----TCHHHHHHHHHH-TTEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceEEEEEECCCch----HHHHHHHHHHHH-CCCEEEeCC------CCEEE
Confidence 5555666666666553 2 222333 45788998874210 012356676665 699999873 57899
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++++. .+++++++++++|++++++
T Consensus 393 l~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 393 FAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99764 4999999999999999865
No 138
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.96 E-value=7.9e-28 Score=244.31 Aligned_cols=334 Identities=13% Similarity=0.085 Sum_probs=214.6
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+ .|+++ .+.+.+.+.+.-+ ... |....+..++++++++++.+..+
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~l~~~la~~~~------ 92 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-------------KLL-HTSNLYYNENIAAAAKNLAKASA------ 92 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-------------TCS-CCCTTSBCHHHHHHHHHHHHHHT------
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-------------hcc-ccccccCCHHHHHHHHHHHHhcC------
Confidence 345668999877 56664 4556665554211 111 11111223555555555554433
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCCc
Q 011801 111 PDRIVMGGGATGANELIMFCLA-------NPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNNF 171 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-------~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~f 171 (477)
+++|++|+|+++|++.++.++. .++|.|++.+|+|+++........+ .++..++.+
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN----- 167 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence 6899999999999999998764 4579999999999887544332212 344444432
Q ss_pred ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 172 KITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 172 ~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
|+++|++++++ ++++|++..++|++|.+ .+++++++|.++|++||+++|+||+|.++...+..+ .... .
T Consensus 168 --d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~-~ 237 (395)
T 3nx3_A 168 --DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEH-A 237 (395)
T ss_dssp --CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGG-G
T ss_pred --CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHh-c
Confidence 68899888753 78888887777777776 678889999999999999999999999764444322 1111 1
Q ss_pred hhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
+....+.||||.+| +|+|+||++++++.+.+.+... ...+..+++++.++.+.|+..+- ++++++.++.
T Consensus 238 -------~~~~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~ 308 (395)
T 3nx3_A 238 -------QILPDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKL 308 (395)
T ss_dssp -------TCCCSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred -------CCCCCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11112348899998 6999999999665425444332 12234678888888777763211 1223333333
Q ss_pred HHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc
Q 011801 329 LAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN 407 (477)
Q Consensus 329 l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~ 407 (477)
.+..++.+.+.+.+.+ +.... ..|+|+|++++.... ..++.+.++ +.||.++|+. ++++|++++.
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~------~~~~~~~l~-~~Gi~v~~~~------~~~iRi~~~~ 374 (395)
T 3nx3_A 309 TPYLEQSLDELINEFDFCKKRK-GLGFMQGLSLDKSVK------VAKVIQKCQ-ENALLLISCG------ENDLRFLPPL 374 (395)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEECTTSC------HHHHHHHHH-HTTEECEEET------TTEEEECCCT
T ss_pred HHHHHHHHHHHHHhCCCeEEEE-eEEEEEEEEeCCcch------HHHHHHHHH-HCCCEEecCC------CCEEEEECCC
Confidence 3333344444444443 33333 345788998875211 224666665 4599999873 6799999765
Q ss_pred C-CHHHHHHHHHHHHHHHhh
Q 011801 408 M-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 408 ~-~~e~l~~~l~~l~~~~~~ 426 (477)
. +++++++++++|++++++
T Consensus 375 ~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 375 ILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 4 999999999999999864
No 139
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.96 E-value=2.7e-27 Score=241.61 Aligned_cols=346 Identities=11% Similarity=0.047 Sum_probs=218.5
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
..|+|..++|.+++. +.+.+.+.-... . ..+ ......|.......++++.+.+.+.+..| .++++|++++
T Consensus 26 ~~i~l~~~~~~~~~~-v~~a~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~s 95 (417)
T 3n0l_A 26 EGLEMIASENFTLPE-VMEVMGSILTNK-Y-AEG---YPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNS 95 (417)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTBGGGGC-C-CCE---ETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cCeeeecccCCCCHH-HHHHHhhhhhcc-c-ccc---CCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEecc
Confidence 458888888887544 444444321000 0 000 00011232222334555544444444333 4667788888
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
| ++|+++++.+++++||+|+++.|+|+++.. .+... .+..+++++++ .++.+|+++|++++++. ++++
T Consensus 96 G-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 167 (417)
T 3n0l_A 96 G-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKL 167 (417)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSE
T ss_pred H-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeE
Confidence 8 799999999999999999999999987644 22222 14556666665 56789999999999743 7889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
|++++|+| |++.+ +++|.++|+++|++||+||+|. +..+.+.....+ ....+++.|+||.+ +
T Consensus 168 v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~----------~~~di~~~s~sK~l--~ 230 (417)
T 3n0l_A 168 IVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF----------PYAHVVSSTTHKTL--R 230 (417)
T ss_dssp EEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT----------TTCSEEEEESSTTT--C
T ss_pred EEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc----------ccceEEEeeCcccc--C
Confidence 98888876 88888 8889999999999999999963 333433221111 12347889999988 7
Q ss_pred CceEEEEEeCCHHHHHHHHHhcccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK- 349 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~- 349 (477)
|.|+||++++++.+.+.+......+ ..+...+.++...+.. ..+..+.+.++++.++++.+.+.|.+.|+++..
T Consensus 231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 308 (417)
T 3n0l_A 231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSD 308 (417)
T ss_dssp SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence 8899999997666666555443222 2233333333333322 112334667778888889999999988888765
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC----CCCEEEEEecc-----CCHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT----EPGWFRVCFAN-----MDDDTLQVALNRI 420 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~----~~~~~Rl~~~~-----~~~e~l~~~l~~l 420 (477)
...+.++|++++... ... +.+..++.++||.++++..+... .+..+|+++.. ++++++++++++|
T Consensus 309 ~~~~~~~~~~~~~~~----~~~--~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l 382 (417)
T 3n0l_A 309 GTDNHLVLMSFLDRE----FSG--KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYI 382 (417)
T ss_dssp SCSSSEEEEECTTSS----SCH--HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCceEEEEEcccCC----CCH--HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHH
Confidence 234568899886321 011 23445566789999876543221 23579999853 3679999999999
Q ss_pred HHHHhhh
Q 011801 421 AAFVQQD 427 (477)
Q Consensus 421 ~~~~~~~ 427 (477)
++++++.
T Consensus 383 ~~~l~~~ 389 (417)
T 3n0l_A 383 ADILDDV 389 (417)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 9999763
No 140
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.96 E-value=2.2e-27 Score=240.56 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=210.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..++++++|++++ .+++++|+|+++|+.+++.++ +++||.|+++.|+|+++...++.. |+++
T Consensus 35 ~~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~ 103 (393)
T 1mdo_A 35 ITTGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANP 103 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEE
T ss_pred cCCChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHC-CCEE
Confidence 3344578999999999996 247999999999999999999 899999999999999998888776 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFS 239 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~ 239 (477)
+.+++++ +++.+|+++|++++++ ++++|+++ ||||.+.+ +++|.++|+++|+++|+||+|+. ..+.
T Consensus 104 ~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~ 170 (393)
T 1mdo_A 104 VMVDVDR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYK 170 (393)
T ss_dssp EEECBCT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET
T ss_pred EEEeccC-CcCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeEC
Confidence 9999874 4578999999988853 78888876 48999887 88889999999999999999984 2333
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC---------------------
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------------- 298 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------------- 298 (477)
+. . + . . .++++.||||..+++|.|+||++++++.+.+.++.....+
T Consensus 171 ~~---~---~-~----~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T 1mdo_A 171 GR---H---I-G----A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLA 237 (393)
T ss_dssp TE---E---T-T----S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESS
T ss_pred Ce---e---c-C----C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccc
Confidence 21 1 1 0 1 4578899993333455699999997666655554432211
Q ss_pred -----CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-C-----CceEEEEeeccchhhcc
Q 011801 299 -----LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK-S-----NAGLFFWMDLRHLLKEK 367 (477)
Q Consensus 299 -----~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~-----~~g~~~~~~l~~~~~~~ 367 (477)
.++.+...++...+.. +++..++.++.++.+.+.|.+.++++.. + .+++++|+.++.....
T Consensus 238 ~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 309 (393)
T 1mdo_A 238 PGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG- 309 (393)
T ss_dssp CCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS-
T ss_pred cCccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccc-
Confidence 0233333332233322 2334444556677888899888766542 2 3456889998731000
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCC--------------CC-----CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQ--------------CT-----EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~--------------~~-----~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. ..++.+.+. +.||.+++|..+. .. ..+++|+++.. .++++++.++++|+++++.+
T Consensus 310 -~~-~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 310 -IT-RDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp -SC-HHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred -cC-HHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 01 124556555 4699999987541 00 13479999974 49999999999999998764
No 141
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.96 E-value=6.4e-28 Score=244.28 Aligned_cols=298 Identities=19% Similarity=0.199 Sum_probs=213.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.|.+..+..++|+++|++++. ++.|++++| ++|+++++.++ .++||.|+++.|+|+++...++.. |++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~~---------~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHGA---------AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTTC---------SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred eecCCHHHHHHHHHHHHHhCC---------CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 355556789999999999962 256777776 89999999999 899999999999999999888776 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
++.++++. ++|.+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|+++|++||+|++|+. ..+
T Consensus 102 ~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDA-ATYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCT-TTCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCC-CcCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 99999875 3588999999998853 677666 9999999987 78888999999999999999984 223
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH--HHHHHHhccc--------------CC---
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV--VNCGRKMSSF--------------GL--- 299 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i--~~~~~~~~~~--------------~~--- 299 (477)
.+ ..+.. .+ ++++.||||..+++|.|+||++++++.+ ...+.....+ +.
T Consensus 169 ~~---~~~~~--------~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 236 (388)
T 1b9h_A 169 QG---KRVGE--------LD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR 236 (388)
T ss_dssp TT---EEGGG--------SS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred CC---eeccc--------cc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCC
Confidence 22 12111 12 4678899977777778999999977645 3433322221 11
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec------CCceEEEEeeccchhhccCchHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK------SNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~------~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
.+.....++...+ + ++++..++++++++++.+.|+++ |+.+.. +.+++++|++++... ..+.
T Consensus 237 ~~~~~~a~~~~~~---~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 305 (388)
T 1b9h_A 237 LNEFSASVLRAQL---A----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERR 305 (388)
T ss_dssp CBHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHH
T ss_pred cCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccH
Confidence 2322222222222 2 24556667778889999999987 787764 345789999998420 0112
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCC---------------------------CCEEEEEecc-C-CHHHHHHHHHHHHHH
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQCTE---------------------------PGWFRVCFAN-M-DDDTLQVALNRIAAF 423 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~~~---------------------------~~~~Rl~~~~-~-~~e~l~~~l~~l~~~ 423 (477)
.++.+.+. +.||.++++..-.... .+.+|+++.. + ++++++.+++.|+++
T Consensus 306 ~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 306 NALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 24666665 4699998874311000 1369999964 6 899999999999998
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
+++
T Consensus 385 ~~~ 387 (388)
T 1b9h_A 385 VAR 387 (388)
T ss_dssp HHH
T ss_pred Hhh
Confidence 864
No 142
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.96 E-value=1e-27 Score=252.32 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=224.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE--EEeCChHHHHHHHHHHhcCCC--------CeEEEcCCCccchHHH
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI--VMGGGATGANELIMFCLANPG--------DAFLVPSPYYAAFDRD 151 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i--~~t~G~t~al~~i~~~l~~~G--------d~vlv~~P~y~~~~~~ 151 (477)
|..+.+..++++++++++.+..| ...+++++ ++|+|+++|+..++.++.++| |.|+++.|+|..+...
T Consensus 131 ~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~ 208 (514)
T 3mad_A 131 PDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA 208 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH
Confidence 44445667888888888887766 33334788 999999999999999998776 9999999999999999
Q ss_pred HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 152 LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
++.. |++++.++++. ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|++||+||
T Consensus 209 ~~~~-G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 209 AQYF-GIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHH-TCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHc-CCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 8887 99999999875 678999999998864 7899999999999999998 7889999999999999999
Q ss_pred cccccccC-----CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc----------
Q 011801 232 IYAATVFS-----SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------- 296 (477)
Q Consensus 232 ~y~~~~~~-----~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------- 296 (477)
+|+++++. +.....+... ..+..+++.|++|.++ +|.++|++++.++.+.........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFR------LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSP 349 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTT------STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEES
T ss_pred ccccccchhHHhcCCCCCccccc------CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCC
Confidence 99876431 1100111101 2345678899999874 788999999988765432211110
Q ss_pred --cCCCc---hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCch
Q 011801 297 --FGLVS---SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLE 370 (477)
Q Consensus 297 --~~~vs---~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~ 370 (477)
.+..+ ...+.++...+.. ..+++..+++.++++++.+.|++. |+++..+..+ ++|+..+.. +
T Consensus 350 ~~~gs~~~~~~~a~~aal~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-~----- 417 (514)
T 3mad_A 350 TFAGSRPGALSATAWAAMLSLGE-----EGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-N----- 417 (514)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-C-----
T ss_pred ccCCCCchHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-C-----
Confidence 01111 1233333333322 235667777888889999999987 8888766655 777765421 1
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhhh
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++.+.+.+ +||.+ +|..| ++++|+++... +++++++++++|++++++.+
T Consensus 418 -~~~l~~~L~~-~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 418 -IYQVMEEMAG-RGWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp -HHHHHHHHHT-TTCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHh-cCCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1246666654 59988 55433 56899999743 56999999999999997654
No 143
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.96 E-value=1.2e-27 Score=245.39 Aligned_cols=326 Identities=14% Similarity=0.192 Sum_probs=221.3
Q ss_pred ccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCC-CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 42 QLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQD-YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 42 ~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
+|+.+++.++. +.+.+.+.+. +. ...|++ ..+..++|+++|++++ .++|++|+|
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~-------------~~-~~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~g 75 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRA-------------LD-SQWLSNGGPLVREFEERVAGLAG----------VRHAVATCN 75 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHH-------------HH-HTCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESC
T ss_pred cccccCCCCCChHHHHHHHHHH-------------Hh-cCCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCC
Confidence 57777777753 4445544442 11 124776 6788999999999996 258999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n 199 (477)
+++|+.+++.++. +||.|+++.|+|+.+...+... |++++.++++. ++|.+|+++|++++++ ++++|+++
T Consensus 76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~- 145 (424)
T 2po3_A 76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWI-GLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGV- 145 (424)
T ss_dssp HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEE-
T ss_pred HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHc-CCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEE-
Confidence 9999999999985 7899999999999999888877 99999999875 4688999999988753 78888886
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE
Q 011801 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278 (477)
Q Consensus 200 P~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG 278 (477)
||||...+ +++|+++|+++|++||+||+|+ ++.+++. ++.. ..+ ++++||||..+++|.|+|
T Consensus 146 --~~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~-------~~d--i~~~S~sk~K~l~~~~~G 208 (424)
T 2po3_A 146 --HLWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGS-------LGD--AEVFSFHATKAVNAFEGG 208 (424)
T ss_dssp --CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTS-------SSS--EEEEECCTTSSSCCSSCE
T ss_pred --CCCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---eccc-------ccC--EEEEeCCCCCCccCCCCe
Confidence 48999866 8888999999999999999998 4555432 2111 123 788999966666779999
Q ss_pred EEEeCCHHHHHHHHHhcccCC----------Cc-hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 279 IVYSFNDTVVNCGRKMSSFGL----------VS-SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 279 ~i~~~~~~i~~~~~~~~~~~~----------vs-~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
|++++++.+.+.++.....+. .+ .+.+..++..+.. ...+++..++.++.++++.+.|.++ |+.
T Consensus 209 ~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 284 (424)
T 2po3_A 209 AVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVL 284 (424)
T ss_dssp EEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEE
T ss_pred EEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999975666555544322110 00 1122222222221 1224555666677778888889877 777
Q ss_pred Eec-CCce----EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--------------CCCE-------
Q 011801 347 CLK-SNAG----LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--------------EPGW------- 400 (477)
Q Consensus 347 ~~~-~~~g----~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--------------~~~~------- 400 (477)
+.. +.++ ++++++++.... ... ..++.+. +.++||.+++. |... .+++
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~l~~~-L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~ 358 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEATT--GIH-RDLVMEV-LKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARV 358 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHHH--SSC-HHHHHHH-HHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTE
T ss_pred ccCCCCCCccccEEEEEEECCccc--hhh-HHHHHHH-HHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCE
Confidence 765 3333 334466663100 001 1245554 45679999872 2210 0122
Q ss_pred EEEEe-ccCCHHHHHHHHHHHHHHHhhhh
Q 011801 401 FRVCF-ANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 401 ~Rl~~-~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+|+++ ...+++++++++++|++++++..
T Consensus 359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 359 LSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 66763 33599999999999999986543
No 144
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=3.4e-27 Score=242.38 Aligned_cols=339 Identities=12% Similarity=0.045 Sum_probs=215.6
Q ss_pred Ccccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+||++.+. +.+ +.+.+.+.+.+.-+. . . ......|++. ...+++++++++++ .+++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~------~-~-~~~~~~~~~~-~~~~l~~~la~~~~--------~~~~ 104 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA------M-S-HVMFGGITHA-PAIELCRKLVAMTP--------QPLE 104 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH------C-S-CCCCSSEECH-HHHHHHHHHHHHSC--------TTCC
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh------c-c-cccccccCCH-HHHHHHHHHHHhCC--------CCCC
Confidence 34578887765 444 345555555442100 0 0 0001133321 23567777777764 4688
Q ss_pred cEEEeCChHHHHHHHHHHhc---C----CCCeEEEcCCCccchHHHHhhhC---------------CcEEEEEeccC-CC
Q 011801 113 RIVMGGGATGANELIMFCLA---N----PGDAFLVPSPYYAAFDRDLSWRT---------------GVQIVPVHCDI-SN 169 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~---~----~Gd~vlv~~P~y~~~~~~~~~~~---------------g~~~~~v~~~~-~~ 169 (477)
+|++|+|+++|++++++.+. + |||.|++.+|+|+++........ ++..++++... .+
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccc
Confidence 99999999999999988653 2 68999999999987654322111 23444443210 12
Q ss_pred Cc-ccCHHHHHHHHHHHHHhCCCeeEEEEeCC--CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 170 NF-KITREALEAAYERAQEASINIKGLIITNP--SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 170 ~f-~i~~~~l~~~~~~~~~~~~~~k~vii~nP--~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.| .+|+++|++++++. ..++++ ++++| +||||. ..+++++++|.++|+++|+++|+||+|.++.+.+..+ .
T Consensus 185 ~~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~ 259 (429)
T 1s0a_A 185 EWDERDMVGFARLMAAH---RHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-A 259 (429)
T ss_dssp CCCGGGGHHHHHHHHHH---TTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G
T ss_pred cchHHHHHHHHHHHHhC---CCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-H
Confidence 34 47899999988742 225554 55667 589996 5578889999999999999999999998754433321 2
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-------cccCCCchHHHHHHHHhcCChhh
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-------SSFGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-------~~~~~vs~~~q~~~~~~L~~~~~ 317 (477)
.. ... ...+ +.||||.+| +| +|+||++++++ +.+.+... ......++++|.++.++|+..+
T Consensus 260 ~~-~~~---~~~d----~~t~sK~l~-~G~~~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~- 328 (429)
T 1s0a_A 260 CE-HAE---IAPD----ILCLGKALT-GGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE- 328 (429)
T ss_dssp GG-GGT---CCCS----EEEECGGGG-TSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred hh-hcC---CCCC----EEEeccccc-CCCccceEEEeCHH-HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence 11 111 1222 237999998 79 99999999654 44444431 1223357788888777765211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
+ .+..++++++++++.+.|+++ ++....+. |+|+|++++...+ ..++.+.++ ++||.++|+
T Consensus 329 --~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~~------~~~l~~~l~-~~Gi~v~~~--- 393 (429)
T 1s0a_A 329 --S--GDWQQQVADIEVQLREQLAPARDAEMVADVRVL-GAIGVVETTHPVN------MAALQKFFV-EQGVWIRPF--- 393 (429)
T ss_dssp --T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TTEEEEEESSCBC------HHHHHHHHH-HTTEECCCB---
T ss_pred --h--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eEEEEEEECCccc------HHHHHHHHH-HCCCEEecc---
Confidence 0 122345556667777777764 34333444 4689999874211 124666666 569999874
Q ss_pred CCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 394 QCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++||+++. .+++++++++++|++++++.
T Consensus 394 ----~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 394 ----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2689999764 49999999999999988653
No 145
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.96 E-value=2.5e-27 Score=243.62 Aligned_cols=307 Identities=13% Similarity=0.139 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhh-----------
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWR----------- 155 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~----------- 155 (477)
.++++.+++++ + .++++|++|+|+++|++.+++.+. ..++.|++.+|+|+++...+...
T Consensus 88 ~~l~~~la~~~----~----~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 88 VDLATRLANIT----P----PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp HHHHHHHHHHS----C----TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred HHHHHHHHHhC----C----CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 44555555543 3 457899999999999999998643 23589999999998765432211
Q ss_pred --CCcEEEEEeccCCCCcc--------cCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhc
Q 011801 156 --TGVQIVPVHCDISNNFK--------ITREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDK 223 (477)
Q Consensus 156 --~g~~~~~v~~~~~~~f~--------i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~ 223 (477)
.|+..++++......|. +|+++|++++++. ...++++ ++++|+ ||||. +.+++++++|.++|++|
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 14444444422111222 4689999888642 1125555 556775 88996 57889999999999999
Q ss_pred CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--c--ccCC
Q 011801 224 NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--S--SFGL 299 (477)
Q Consensus 224 ~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~--~~~~ 299 (477)
|++||+||+|.++.+.+.. .... ... ...+ +.||||.+| +|+|+||++++++ +.+.+... . ....
T Consensus 237 ~~~li~DEv~~~~g~~g~~-~~~~-~~~---~~~d----i~s~sK~~~-~G~~ig~~~~~~~-~~~~~~~~~~~~~~t~~ 305 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTM-FACQ-RDG---VTPD----ILTLSKTLG-AGLPLAAIVTSAA-IEERAHELGYLFYTTHV 305 (433)
T ss_dssp TCEEEEECTTTTTTTTSSS-STHH-HHT---CCCS----EEEECHHHH-TTSSCEEEEECHH-HHHHHHHTTCCCCCTTT
T ss_pred CCEEEEeccccCCCcCchH-hHHh-hcC---CCCC----EEEeccccc-CCCCeeEEEEhHH-HHHhhccCCCCCCCCCC
Confidence 9999999999976544432 2221 111 0222 348999999 5999999999654 44444431 1 2233
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhc--cCchHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKE--KTLEGE 372 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e 372 (477)
.++++|.++.++|+..+ + ....++++++++.+.+.|++ .+ +....+ .|+|+|++++..... ......
T Consensus 306 ~~~~~~~a~~aal~~~~--~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~ 379 (433)
T 1zod_A 306 SDPLPAAVGLRVLDVVQ--R---DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-RGLLLGVEIVKDRRTKEPADGLG 379 (433)
T ss_dssp TCHHHHHHHHHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECTTHH
T ss_pred cCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHH
Confidence 57788887777764211 0 11223344444555554543 23 233333 457889988742100 000122
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.++++.++ +.||.+.||..|+ .++++||+++. .+++++++++++|++++++
T Consensus 380 ~~~~~~l~-~~Gv~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 380 AKITRECM-NLGLSMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHH-HTTEECCEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCeEeccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 35777776 5699999998775 35799998764 4899999999999998864
No 146
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.96 E-value=1.1e-27 Score=246.84 Aligned_cols=349 Identities=15% Similarity=0.080 Sum_probs=215.6
Q ss_pred CCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+.+ .+ +++.+.+.+.+. ......|....|..++++++++++.+..+ ..
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~ 102 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAA-------------AANPAGATILSASNAPAVTLAERLLASFP----GE 102 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHH-------------HHSCSCSCSSSSEEHHHHHHHHHHHHTTT----CT
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 34556789987755 33 345555555442 11223344345667788888888876643 23
Q ss_pred C-CcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEE--------------EEEeccCCCCccc
Q 011801 111 P-DRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQI--------------VPVHCDISNNFKI 173 (477)
Q Consensus 111 ~-~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~--------------~~v~~~~~~~f~i 173 (477)
. ++|++|+|+++|++.++.++ ..+++.|++.+|+|+++...+....|... ..++.+ +.+..
T Consensus 103 ~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 180 (439)
T 3dxv_A 103 GTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRND 180 (439)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--ccccc
Confidence 4 79999999999999999874 33567899999999776554433323221 112221 11111
Q ss_pred -----CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 174 -----TREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 174 -----~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+++|++++++ ....++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++...+..+ ..
T Consensus 181 ~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-~~- 256 (439)
T 3dxv_A 181 PTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-CF- 256 (439)
T ss_dssp TTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-GG-
T ss_pred ccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HH-
Confidence 68889888841 11236777777777788888765 4459999999999999999999999754444321 11
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVET 325 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~ 325 (477)
+... ..++ + .||||.+| +|+|+||+++++ .+.+.+... ...+ .++++|.++.++|+..+. + +.
T Consensus 257 ~~~~---~~~d-i---~s~sK~~~-~G~riG~~~~~~-~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~----~~ 321 (439)
T 3dxv_A 257 EHEG---FVPD-I---LVLGKGLG-GGLPLSAVIAPA-EILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-D----DL 321 (439)
T ss_dssp GGTT---CCCS-E---EEECGGGG-TTSCCEEEEEEH-HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-T----TH
T ss_pred HhcC---CCCC-E---EEEcchhc-CCcceEEEEECH-HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-c----CH
Confidence 1111 1222 2 29999999 799999999954 444433322 2223 677888887777753221 1 12
Q ss_pred HHHHHHHHHHHHHHHh----hCC-CeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 326 SKRLAKRHHNFTKGLE----QVG-INCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~----~~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
.++++++++.+.+.|. +.+ +....+ .|.|+|+++...... .......++++.++++ ||.+.||..+ +
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~ 395 (439)
T 3dxv_A 322 PAMAERKGRLLRDGLSELAKRHPLIGDIRG-RGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----G 395 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----C
Confidence 2233333333444333 343 333333 457888877321000 0111223566777655 9999998532 4
Q ss_pred CEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 399 GWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 399 ~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+++||+++.. +++++++++++|++++++.
T Consensus 396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 396 NVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999987654 8999999999999999764
No 147
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.96 E-value=6.4e-27 Score=242.81 Aligned_cols=355 Identities=11% Similarity=0.003 Sum_probs=223.7
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
.+.+.+||++.+ .+.++ .+.+.+.+.+.- .... .|....+..++++++++.+.+..+ .
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 110 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQA-------------KNLAYYHAYVGHGTEASITLAKMIIDRAP----K 110 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHHSCCCCCTTCCCHHHHHHHHHHHHHSC----T
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHhhCC----C
Confidence 445668999876 45553 355555554421 1111 233334445677777777766533 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhC--------------CcEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRT--------------GVQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~--------------g~~~~~v~~~~ 167 (477)
++++|++|+|+++|++.+++++.. +++.|++.+|+|+++...+.... +...+++|...
T Consensus 111 ~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (460)
T 3gju_A 111 GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYF 190 (460)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGG
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccc
Confidence 578999999999999999988763 56999999999988764433221 22333333211
Q ss_pred -CCCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 -SNNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 -~~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+++..+ +++|++++++.. ..++++|++..++|++|. +.+.+.+++|.++|++||++||+||+|.++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 268 (460)
T 3gju_A 191 RRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFG 268 (460)
T ss_dssp GCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 1222333 578888776421 125666555544667776 6788889999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---------hcccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---------MSSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---------~~~~~~vs~~~q~~ 307 (477)
..+..+ .. +... ..++ +.+|||.++ .| +|+||++++++ +.+.+.. ....+..++++|.+
T Consensus 269 r~g~~~-~~-~~~~---~~pd----i~t~sK~l~-gG~~~lg~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 337 (460)
T 3gju_A 269 RLGTMF-GS-DHYG---IKPD----LITIAKGLT-SAYAPLSGVIVADR-VWQVLVQGSDKLGSLGHGWTYSAHPICVAA 337 (460)
T ss_dssp TTSSSC-HH-HHHT---CCCS----EEEECGGGT-TTSSCCEEEEEEHH-HHHHHHHHHHHHCSCSCCCTTTTCHHHHHH
T ss_pred cccccc-hH-hhcC---CCCC----eeeeehhhc-CCCCCeEEEEECHH-HHHHHhcccccccccccCCCCCCCHHHHHH
Confidence 544332 22 2211 1222 337899998 66 89999999554 4444421 12223467888988
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhc-cCc----hHHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKE-KTL----EGEIALWRTIVN 381 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~-~~~----~~e~~l~~~ll~ 381 (477)
+.++|+..+- ++++++.++..+..++.+.+.+.+.+ +....+ .|+|+++++...... ..+ ....++.+.+++
T Consensus 338 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 338 GVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG-DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 8888863221 22344455555555666666676664 334444 356888887642110 001 112245566665
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.||.++|+. .++++||++.. .+++++++++++|++++++.
T Consensus 416 -~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 416 -SGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp -TTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999975 25789999654 49999999999999999763
No 148
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.96 E-value=3.8e-27 Score=244.21 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=203.1
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----Hhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~ 155 (477)
..|. ..|.+ +++++++++.+..| .+++++++|+++|+.+++. ++++||.|++++|+|+++... ++..
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 195 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHc
Confidence 3465 34555 78888888877655 3477888888999998885 789999999999999988753 3444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.
T Consensus 196 -G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 196 -GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred -CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9999988863 68889888753 7999999999999999997 88999999999999999999974
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L 312 (477)
.. .+.++ ..+.++++.|+||.++.+ |+|+||++++++.+.+.+.... ..+.++++.|+++...|
T Consensus 259 g~----~~~~~---------~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al 325 (464)
T 1ibj_A 259 PV----LSRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 325 (464)
T ss_dssp TT----TCCGG---------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred cc----cCChh---------hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence 21 11111 124678899999998744 8999999998766655555443 22346788888888888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHH----------HHHhhC-CCeEecCC---ceEEEEeeccchhhccCchHHHHHHHH
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFT----------KGLEQV-GINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~----------~~L~~~-gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+... .+++..+......+++. ++|+++ ++++..++ .|.++|++++.. +....+.+.
T Consensus 326 ~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~------~~~~~~~~~ 396 (464)
T 1ibj_A 326 KTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV------ALSKHLVET 396 (464)
T ss_dssp TTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH------HHHHHHHHH
T ss_pred hhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH------HHHHHHHHh
Confidence 76432 12222222222222222 233333 34444433 245888888521 111134443
Q ss_pred HHHhcCeEEeCCC------------CCCC---------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 379 IVNDVKLNVSPGS------------SFQC---------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 379 ll~~~gI~v~pg~------------~f~~---------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+ ...||.+++|. .|.. ..++++|++++. |++++++++|++++++
T Consensus 397 L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 397 T-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp C-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred c-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 3 34689888886 1211 125799999995 8899999999999864
No 149
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=1.1e-26 Score=237.57 Aligned_cols=281 Identities=14% Similarity=0.117 Sum_probs=187.6
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-h--HHHHhhhCCc--EEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAA-F--DRDLSWRTGV--QIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~--~~~~~~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++++|+++|+..++.+++++||.|+++.|+|++ + ....... |. +.++++.+. +++.+|+++|++++++.
T Consensus 98 v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~---- 171 (425)
T 3ecd_A 98 VQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALS-GKWFNALQYGVSR-DTMLIDYDQVEALAQQH---- 171 (425)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH----
T ss_pred eecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhc-ccceeeeecCCCc-ccCccCHHHHHHHHhhc----
Confidence 458888999999999999999999999999987 2 2221122 44 555666553 45889999999999753
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||+ ..+ +++|.++|+++|++||+||+|. +..+.+..+.. .. . ..+++.|+||
T Consensus 172 -~~~~v~~~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~----~~----~--~di~~~s~sK 235 (425)
T 3ecd_A 172 -KPSLIIAGFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP----VE----H--AHVVTSTTHK 235 (425)
T ss_dssp -CCSEEEEECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG----GG----T--CSEEEEESSG
T ss_pred -CCcEEEEccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc----hh----c--CcEEEecCCc
Confidence 78999999999964 344 7899999999999999999953 33343332221 11 1 2277899999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHHhcccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
.+ +|.|+||++++++.+...+......+ ..+...+.++...+.. ..+..+++..++++++++.+.+.|.+.|+
T Consensus 236 ~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (425)
T 3ecd_A 236 TL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAGGV 311 (425)
T ss_dssp GG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88 67899999998776666554432221 2233333333322221 11233566777888889999999999998
Q ss_pred eEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEEEEEeccC-----CHHHHHH
Q 011801 346 NCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWFRVCFANM-----DDDTLQV 415 (477)
Q Consensus 346 ~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~~-----~~e~l~~ 415 (477)
++..+ ..++++|+.++.... .. +.+...+.++||.++ ||..+.+..++++|+++... +++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~ 385 (425)
T 3ecd_A 312 DLVTGGTDNHLLLVDLRPKGL----KG--AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFRE 385 (425)
T ss_dssp EEGGGSCSSSEEEEECGGGTC----CH--HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHH
T ss_pred eeccCCCCceEEEEEeCCCCC----CH--HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHH
Confidence 87754 467889998874211 11 234455567799999 55433333456899996432 4899999
Q ss_pred HHHHHHHHHhhh
Q 011801 416 ALNRIAAFVQQD 427 (477)
Q Consensus 416 ~l~~l~~~~~~~ 427 (477)
++++|++++++.
T Consensus 386 ~~~~l~~~l~~~ 397 (425)
T 3ecd_A 386 VGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999999764
No 150
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=2.2e-27 Score=245.84 Aligned_cols=359 Identities=13% Similarity=0.065 Sum_probs=216.7
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .|.++ ++.+.+++.+. +.....|....+..+.+.++++++.+..+. -.
T Consensus 61 ~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 124 (453)
T 4ffc_A 61 ADGNSFIDLGAGIAVTTVGASHPAVAAAIADQ-------------ATHFTHTCFMVTPYEQYVQVAELLNALTPG---DH 124 (453)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHH-------------HHHCSCCTTTTSCCHHHHHHHHHHHHHSSC---SS
T ss_pred CCCCEEEEcCCCcccCcCCCCCHHHHHHHHHH-------------HHhccccccCcCCCHHHHHHHHHHHHhCCC---CC
Confidence 445668999876 56663 45566655542 112233443334566777777777655431 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEecc--CCCCccc
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCD--ISNNFKI 173 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~--~~~~f~i 173 (477)
+++|++|+|+++|++.+++.+. ..++.|++.+|+|+++...+...++. .+..++.. ..+.+..
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL 204 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc
Confidence 5799999999999999997754 24589999999999876544332121 23334432 1122333
Q ss_pred C-HHHHHHHHHHHHHh-CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 174 T-REALEAAYERAQEA-SINIKGLIITNPSNPLG--TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 174 ~-~~~l~~~~~~~~~~-~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
+ .+.++..++...+. +.+..++++++|.||+| ...+.+.+++|.++|++||++||+||+|.++...+.. .... .
T Consensus 205 ~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~~-~ 282 (453)
T 4ffc_A 205 TGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAW-FASE-H 282 (453)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHH-H
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccccc-chhh-h
Confidence 3 23333222221111 12345678888988877 4457888999999999999999999999986554432 2221 1
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
.. ..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..++++|.++.++|+..+- ++++++.++
T Consensus 283 ~~---~~pd----i~t~sK~~~-~G~~~G~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~ 352 (453)
T 4ffc_A 283 EG---IVPD----IVTMAKGIA-GGMPLSAVTGRA-ELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARA 352 (453)
T ss_dssp HT---CCCS----EEEECGGGG-TTSSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred cC---CCcc----hHhhhhhhc-CCcCeEEEEECH-HHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 11 1122 447999998 599999999954 444433322 22234678899888887763211 112233232
Q ss_pred HHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 328 RLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
.....++.+.+.+.+.+ +.... ..|+|+|+++.... .........++++.+++ +||.+.|+..| .+++|+++
T Consensus 353 ~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~ 426 (453)
T 4ffc_A 353 IEASVTSRLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLP 426 (453)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEEC
Confidence 22333333444444443 33333 34678898885310 00111222356666664 59999998654 35899998
Q ss_pred ccC-CHHHHHHHHHHHHHHHhhh
Q 011801 406 ANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 406 ~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.. +++++++++++|++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 427 PLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 754 9999999999999999763
No 151
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.95 E-value=2.5e-27 Score=246.81 Aligned_cols=301 Identities=14% Similarity=0.146 Sum_probs=219.0
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCC-----eEEEcCCCccchHHHHhhh
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGD-----AFLVPSPYYAAFDRDLSWR 155 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd-----~vlv~~P~y~~~~~~~~~~ 155 (477)
..|..++++++++++.+..| .+. .+++++|+++|+..++.++ .++|| .|+++.|+|+.+...+...
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 44667888888888887766 222 4678899999999755543 35887 9999999999998888776
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++++. ++.+|+++|++++.+ ++++|++++| ||||.+. +++++|.++|+++|+++|+||+|+.
T Consensus 177 -G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 177 -GYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp -TCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred -CCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 99999999863 578999999998853 7899999998 6899883 3489999999999999999999986
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-C---ceEEEEEeCCHHHHHHHH-H-----------------
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-G---FRVGIVYSFNDTVVNCGR-K----------------- 293 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G---~RvG~i~~~~~~i~~~~~-~----------------- 293 (477)
..++ ..+.... +..+++.|+||.|+.| | +|+||++++++.+ ..+. .
T Consensus 245 ~~~g---~~~~~~~--------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~-~~l~~~~~~~~g~~~~~~~~~~~ 312 (474)
T 1wyu_B 245 AIMG---WARPGDM--------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDFDRPK 312 (474)
T ss_dssp GTTT---TCCHHHH--------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEECCCTT
T ss_pred hhcc---CCCcccC--------CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH-HhCCCCeeeccCCeeEecccCcc
Confidence 5432 1222221 3457788999999877 4 5999999976543 2221 0
Q ss_pred ----hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE--EEeeccchhhcc
Q 011801 294 ----MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF--FWMDLRHLLKEK 367 (477)
Q Consensus 294 ----~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~--~~~~l~~~~~~~ 367 (477)
...+ ..+...+.++..++.... .+.+++..+++.++++++.+.|++.|+++..+.. .+ +|++++...
T Consensus 313 ~~~~~~~~-~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~--- 385 (474)
T 1wyu_B 313 SIGRVRSF-YGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGP-SMHEFVAQPPEGF--- 385 (474)
T ss_dssp CCCCSSST-TSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSS-CCSCEEEBCSTTC---
T ss_pred cCcccccC-cCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCC-cceEEEEEcCCCC---
Confidence 0111 245566666666665322 3446777888889999999999988877633322 23 566663111
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
...++.+.++++ ||.+ |+..|....++++||+++.. +++++++++++|++++++
T Consensus 386 ---~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 386 ---RALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ---CHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ---CHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 123577777755 9985 66666433467899999854 799999999999999875
No 152
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.95 E-value=1.6e-26 Score=239.76 Aligned_cols=352 Identities=7% Similarity=-0.008 Sum_probs=219.1
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
.+.+.+||++.+ .|.++ .+.+.+.+.+.- .... .|....+..+.++++++++.+..+ .
T Consensus 47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 109 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQM-------------EELPFYNTFFKTTHPAVVELSSLLAEVTP----A 109 (459)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCTTSSSCCHHHHHHHHHHHHHSC----T
T ss_pred CCCCEEEECCCchhcccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----C
Confidence 445668999876 56653 355555554421 1111 233333456777777777776544 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhC--------------CcEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRT--------------GVQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~--------------g~~~~~v~~~~ 167 (477)
++++|++|+|+++|++.+++++.. +++.|++.+|+|+++...+.... +...+++|...
T Consensus 110 ~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (459)
T 4a6r_A 110 GFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWY 189 (459)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccc
Confidence 578999999999999999998865 57999999999998765443321 22233333200
Q ss_pred C-CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCC-Cccc-CCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 168 S-NNFKIT--------REALEAAYERAQEASINIKGLIITNPSN-PLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 168 ~-~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
. +.+ +| +++|++++++... .+++ +++++|.| ++|. +.+++++++|.++|++||++||+||+|.++
T Consensus 190 ~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 190 KHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp HHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 0 122 34 6788887764211 1444 56666654 5555 558999999999999999999999999986
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH---H--hcccCCCchHHHHHHHHh
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR---K--MSSFGLVSSQTQYLLASM 311 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~---~--~~~~~~vs~~~q~~~~~~ 311 (477)
...+..+ .. +... ..++ +.+|||.++..|+|+||++++++ +.+.+. . ....+..++++|.++.+.
T Consensus 266 gr~G~~~-~~-~~~~---~~pd----i~t~sK~l~gg~~~lg~v~~~~~-i~~~~~~~~~~~~~~t~~~~~~~~aaa~aa 335 (459)
T 4a6r_A 266 GRTGEWF-GH-QHFG---FQPD----LFTAAKGLSSGYLPIGAVFVGKR-VAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335 (459)
T ss_dssp TTTSSSS-HH-HHHT---CCCS----EEEECGGGGTTSSCCEEEEECHH-HHHHHHHHCTTHHHHHHCSCHHHHHHHHHH
T ss_pred Ccccccc-hH-hhcC---CCCC----eeehhhhhcCCCCCccceeeCHH-HHHHhhcCCCcccCCCCCCCHHHHHHHHHH
Confidence 5555432 22 2211 1222 23789999844499999999554 544443 1 122234788899888888
Q ss_pred cCChhhHHHHHHHHH-HHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhcc-----CchHHHHHHHHHHHhcC
Q 011801 312 LSDDEFVDNFLVETS-KRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEK-----TLEGEIALWRTIVNDVK 384 (477)
Q Consensus 312 L~~~~~~~~~~~~~~-~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~-----~~~~e~~l~~~ll~~~g 384 (477)
|+..+- ++++++.+ +.....++.+.+.|.+.+ +....+. |+|+++++....... ......++++.+++ .|
T Consensus 336 l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 412 (459)
T 4a6r_A 336 VAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NN 412 (459)
T ss_dssp HHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TT
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEEEEEecCccccccccchHHHHHHHHHHHHH-CC
Confidence 863221 12233333 333333444545555553 3444444 568888776421110 00112346666665 49
Q ss_pred eEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 385 LNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 385 I~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
|.++|+. +++||++... +++++++++++|++++++.
T Consensus 413 v~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 413 LIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999862 6899997543 9999999999999998764
No 153
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.95 E-value=5e-27 Score=239.74 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhh-CCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWR-TGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~-~g~~~~~v~ 164 (477)
..+++...+++.+..| .++++|++++| ++|+..++.+++++||.|+++.|+|+.+. ..+... .+...++++
T Consensus 75 ~~~~~~~~~~la~~~~----~~~~~v~~~sG-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 149 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFG----ADYANVQPHSG-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYG 149 (420)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCceeEecCc-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEecc
Confidence 4444433344444333 45667767776 78999999999999999999999998743 111222 134566666
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+ .++.+|+++|++++++. ++++|++++|+||+ ..+ +++|.++|+++|++||+||+|....+....+.
T Consensus 150 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~ 217 (420)
T 3gbx_A 150 ID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP 217 (420)
T ss_dssp EC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC
T ss_pred CC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCC
Confidence 65 46789999999999763 68899999999974 555 88999999999999999999753322111111
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC--HHHHHHHHHhc-c--cCCCchHHHHHHHHhcCChhhHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN--DTVVNCGRKMS-S--FGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~--~~i~~~~~~~~-~--~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
.. . ....+++.|+||.++ |.+.||+++++ +.+...+.... . .+..+...+.++...+... .+
T Consensus 218 ~~---~------~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~ 284 (420)
T 3gbx_A 218 NP---V------PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--ME 284 (420)
T ss_dssp CS---T------TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TS
T ss_pred cc---c------ccCCEEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--Hh
Confidence 10 1 123478999999994 55569999977 35555444322 1 1222333333333222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC-------CC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP-------GS 391 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p-------g~ 391 (477)
..+++.++++.++++.+.+.|.+.|+++..+ ..++++|++++.... .. +.+...++++||.+.| |.
T Consensus 285 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~~gi~v~~~~~~~~~~~ 358 (420)
T 3gbx_A 285 PEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNL----TG--KEADAALGRANITVNKNSVPNDPKS 358 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC----CH--HHHHHHHHHTTEECEEECCTTCSSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCC----CH--HHHHHHHHHCCcEeccccCCCCccc
Confidence 3356777888889999999999999887653 456788998864211 11 2344556778999998 43
Q ss_pred CCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 392 SFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
.|. +..+|+++.. ++++++++++++|++++++.
T Consensus 359 ~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 359 PFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp TTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCC---CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 332 4569999864 35799999999999999764
No 154
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=2.5e-27 Score=241.98 Aligned_cols=282 Identities=11% Similarity=0.059 Sum_probs=199.8
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------CCCCeE-EEcCCCccchHHHHh---hhC
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------NPGDAF-LVPSPYYAAFDRDLS---WRT 156 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~~Gd~v-lv~~P~y~~~~~~~~---~~~ 156 (477)
...+++++++++++ .++++|++|+|+++++.+++.++. ++||.+ +++.++|+.+...+. ...
T Consensus 72 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 72 LSERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp HHHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHh
Confidence 35677777777765 467899999999999998888876 899975 455567876544322 122
Q ss_pred --CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 157 --GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 157 --g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
|.+++.+++ +++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+
T Consensus 144 ~~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~ 205 (416)
T 1qz9_A 144 QQGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHS 205 (416)
T ss_dssp CSSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCceEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccc
Confidence 888888874 5677777643 7899999999999999999 7889999999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-------------------
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM------------------- 294 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~------------------- 294 (477)
++... .++... +..+++.|+||.++ +|.++ |+++++++.+.. ++..
T Consensus 206 ---~g~~~-~~~~~~--------~~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~~~-l~~~~~g~~g~~~~~~~~~~~~~ 271 (416)
T 1qz9_A 206 ---AGAVP-VDLHQA--------GADYAIGCTYKYLN-GGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEP 271 (416)
T ss_dssp ---TTTSC-CCHHHH--------TCSEEEECSSSTTC-CCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCB
T ss_pred ---ccCcC-CChhhc--------CCCEEEecCcccCC-CCCCCeEEEEECHHHHhc-cCCCccccCccccccCCCCccCC
Confidence 32222 222222 23477899999985 77888 999997654322 2111
Q ss_pred ------cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCC----ceEEEEeec
Q 011801 295 ------SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSN----AGLFFWMDL 360 (477)
Q Consensus 295 ------~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~----~g~~~~~~l 360 (477)
...++.+...+.++...+.... +..+++..++++++++++.+.|.+. |+++..+. .+.++|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 349 (416)
T 1qz9_A 272 SNGIARYLCGTQPITSLAMVECGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH 349 (416)
T ss_dssp CSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC
T ss_pred CcchHHhcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec
Confidence 0123345555555555553211 1124566778888889999999886 88877653 356789988
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec--cCCHHHHHHHHHHHHHHHhh
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA--NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~--~~~~e~l~~~l~~l~~~~~~ 426 (477)
+. ..++.+.+. ++||.+... .++++||+++ ..+++++++++++|++++++
T Consensus 350 ~~---------~~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 350 PE---------GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TT---------HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC---------HHHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 73 124666655 559987532 3679999997 45999999999999999875
No 155
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=249.92 Aligned_cols=310 Identities=12% Similarity=0.107 Sum_probs=224.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC-----CC---CeEEEcCCCccchHHHHh
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN-----PG---DAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-----~G---d~vlv~~P~y~~~~~~~~ 153 (477)
|..+.|..++++++++++.+..| ++.+++++++++|+++|+.+++.++.+ +| |.|+++.|+|+.+...+.
T Consensus 99 ~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~ 176 (497)
T 3mc6_A 99 PDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY 176 (497)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH
Confidence 44456778899999999888877 223478999999999999999998854 56 899999999999999888
Q ss_pred hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 154 WRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.. |++++.++++. +++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|
T Consensus 177 ~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~ 245 (497)
T 3mc6_A 177 YF-GMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCL 245 (497)
T ss_dssp HS-CCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTT
T ss_pred Hc-CCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcc
Confidence 77 99999999875 4688999999998854 7899999999999999988 778889999999999999999
Q ss_pred cccccC--C---CCcc-cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC------CC-
Q 011801 234 AATVFS--S---PKFT-SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG------LV- 300 (477)
Q Consensus 234 ~~~~~~--~---~~~~-s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~------~v- 300 (477)
+++... . .... .+. . . ..+..+++.|++|.++ +|.++|++++.++.+..........+ ..
T Consensus 246 ~~~~~~f~~~~~~~~~~~~~-~-~----~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (497)
T 3mc6_A 246 GSFIVSFMEKAGYKNLPLLD-F-R----VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPT 318 (497)
T ss_dssp THHHHGGGTTTTCCSCCCCS-T-T----STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSS
T ss_pred hhhhhhhhhhhcccCCcccc-c-c----CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCCcC
Confidence 864321 1 0000 110 0 0 2345677889999874 88899999998776543321111111 00
Q ss_pred --c------hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecCCceEEEEeeccchhhccCch
Q 011801 301 --S------SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSNAGLFFWMDLRHLLKEKTLE 370 (477)
Q Consensus 301 --s------~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~~~g~~~~~~l~~~~~~~~~~ 370 (477)
+ ..+++++...+.... +++..+++.++.+++.+.|.+. |+++..+..+.++++..+..
T Consensus 319 ~~g~~~~~~~~a~~aal~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~------- 386 (497)
T 3mc6_A 319 LAGSRPGAIVVGCWATMVNMGENG-----YIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL------- 386 (497)
T ss_dssp SCSSCBHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT-------
T ss_pred cccCCcchhHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC-------
Confidence 0 234555555554332 4566677778888999999984 88887433334455554421
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+..++.+.+. +.||.+.++.. +..+|+++...+++++++++++|++++++.+.
T Consensus 387 ~~~~l~~~L~-~~Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 387 NIHELSDRLS-KKGWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp THHHHHHHHH-TTTCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-hCCEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1124556655 55999886643 34689999866999999999999999976543
No 156
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.95 E-value=5.2e-28 Score=242.03 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCCh-HHHHHHHHHHhcCC---CCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA-TGANELIMFCLANP---GDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~-t~al~~i~~~l~~~---Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
..++++.++++++ +. ++++|++|+|+ ++|+.+++..+..+ ||.|+++.++|... ..++.. | +++.+
T Consensus 50 ~~~l~~~la~~~g------~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~-g-~~~~v 119 (360)
T 1w23_A 50 HEQAQNLLRELLQ------IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLL-G-ETHIA 119 (360)
T ss_dssp HHHHHHHHHHHHT------CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTT-S-EEEEE
T ss_pred HHHHHHHHHHHhC------CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHh-C-CeEEe
Confidence 3466666666665 22 36799999999 99999999998765 56677777777543 334555 9 99999
Q ss_pred eccCCCCcccCHHHHHH-HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKITREALEA-AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~-~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+++.+++ .+|++++++ ++. .++|+|++++|+||||.+++ ++. +++|++||+||+|+... .+
T Consensus 120 ~~~~~~~-~~d~~~l~~~~i~------~~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~---~~ 181 (360)
T 1w23_A 120 ASTKANS-YQSIPDFSEFQLN------ENDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILS---RP 181 (360)
T ss_dssp EECGGGT-SCSCCCGGGCCCC------TTEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTS---SC
T ss_pred ecccccC-cCCccchHhhccC------CCCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCC---CC
Confidence 9874333 368888877 663 27999999999999999987 332 27999999999998531 11
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------------cccCCCchHHHHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------------SSFGLVSSQTQYLL 308 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------------~~~~~vs~~~q~~~ 308 (477)
.++. ..+ ++++|+||.+|++| +||++++++.+ +.+... ..+++.+...+.++
T Consensus 182 -~~~~--------~~d--i~~~s~sK~~~~~G--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (360)
T 1w23_A 182 -LKVN--------QFG--MIYAGAQKNLGPSG--VTVVIVKKDLL-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYML 247 (360)
T ss_dssp -CCGG--------GCS--EEEEETTTTTSCTT--CEEEEEEHHHH-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHH
T ss_pred -cCcc--------cCC--EEEEEcccccCCCC--cEEEEEcHHHH-hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHH
Confidence 1221 112 68899999999666 99999965543 222221 11233455566666
Q ss_pred HHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhCC-C-eEe--cC-CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 309 ASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQVG-I-NCL--KS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 309 ~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~--~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
...+.... +. .+++.+++++++++++.+.|++.+ + .+. +. .+++++|++++... ...++.+.+ .+
T Consensus 248 ~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l-~~ 318 (360)
T 1w23_A 248 RNVLDWIK--DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLAKA-KE 318 (360)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHHHH-HH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc------cHHHHHHHH-HH
Confidence 55554211 11 467778888999999999999885 5 543 22 34669999987531 112455554 45
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.||.+.||..+ ++++|++++.. +++++++++++|++++++
T Consensus 319 ~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 319 QGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp TTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 79999998754 57899999864 899999999999998764
No 157
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=2.1e-27 Score=238.24 Aligned_cols=288 Identities=14% Similarity=0.077 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-c-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-R-IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~-i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
..++++++.+.+.+..| ++++ + +++|+|+++++..++.++++|||.|+++.+.+... ...++.. | +++.+
T Consensus 47 ~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g-~~~~v 120 (362)
T 2c0r_A 47 YEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-G-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-S-CEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHh-C-CeEEE
Confidence 34556666666665555 3453 6 56789999999999999999999999887664332 3455556 8 88888
Q ss_pred eccCC--CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 164 HCDIS--NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~~--~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+++.+ .++.+|.++++ + +.++|+|++++|+||||.+++ ++++| +|+++|+|++|+.. ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i------~~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~---~~ 181 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--L------QDNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL---SR 181 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--C------CTTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT---SS
T ss_pred ecccccccccCCCHHHcc--c------CCCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc---CC
Confidence 87632 23334655543 3 237999999999999999754 24444 79999999999842 22
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--------------hcccCCCchHHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--------------MSSFGLVSSQTQYL 307 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--------------~~~~~~vs~~~q~~ 307 (477)
+ .++ . .. .+++.|+||.+|++| +||++++++.+. .+.+ ....++++...|.+
T Consensus 182 ~-~~~----~----~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 247 (362)
T 2c0r_A 182 P-FDL----N----QF--GLVYAGAQKNLGPSG--VTVVIVREDLVA-ESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYM 247 (362)
T ss_dssp C-CCG----G----GC--SEEEEETTTTTCCSS--CEEEEEEGGGSS-SCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred c-cch----h----HC--cEEEEeccccccCcC--cEEEEEcHHHHh-hccccCchHHhHHHHhhccCcCCCchHHHHHH
Confidence 1 221 1 12 367889999999888 999999665432 1111 01234567788888
Q ss_pred HHHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhCC-C-eEec---CCceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQVG-I-NCLK---SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 308 ~~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~---~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
+..+|+... +. .+++.+++++++++++.+.|++.| + ++.. ..++.++|+.++...+ ..++.+.+ .
T Consensus 248 ~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L-~ 318 (362)
T 2c0r_A 248 VNEVLKWIE--ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEEL------EKEFVKAS-E 318 (362)
T ss_dssp HHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHH------HHHHHHHH-H
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcch------HHHHHHHH-H
Confidence 887775321 21 467788899999999999999987 6 6642 1234567888874221 12455554 5
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.||.+.||..| .+++|+|++.. ++++++++++.|+++++++
T Consensus 319 ~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 319 QEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 669999988765 35799999864 7999999999999998753
No 158
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.95 E-value=9.5e-27 Score=242.89 Aligned_cols=344 Identities=14% Similarity=0.119 Sum_probs=226.7
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC----cE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD----RI 114 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----~i 114 (477)
+.|.|..++|+.+.. +.+.+.+.-.. ...+|. .....|....+..++++++.+++.+.+| .+++ +|
T Consensus 45 ~~i~L~a~e~~~~~~-V~eA~~~~l~~--~~~~g~---p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V 114 (483)
T 1rv3_A 45 VGLELIASENFASRA-VLEALGSCLNN--KYSLGY---PGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 114 (483)
T ss_dssp SSEECCTTCCCCCHH-HHHHHTSGGGT--CCCCEE---TTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCeEEEcCCCCCCHH-HHHHHHHHHhc--cCcccC---CCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEE
Confidence 468888888876544 44444332100 000010 0001233333456788777777777766 3443 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--------HhhhCC--cEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD--------LSWRTG--VQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--------~~~~~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
++++|+ +++..++.++++|||+|++++|.|+++... +... | ++.+++++++ .++.+|+++|++++++
T Consensus 115 ~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~-G~~~~~v~~~~~~-~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 115 QPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNP-DTGYIDYDRLEENARL 191 (483)
T ss_dssp CCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred EECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccc-cceEEEEECcccc-CCCcCCHHHHHHHHhh
Confidence 888888 899998999999999999999999877532 2222 4 5566665553 4688999999999974
Q ss_pred HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 185 AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
. ++|+|++ +++||+ .+++ +++|.++|+++|++||+|++|+ +.++.+....++ . ...+++
T Consensus 192 ~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~----~------~~div~ 251 (483)
T 1rv3_A 192 F-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF----E------HCHVVT 251 (483)
T ss_dssp H-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG----G------TCSEEE
T ss_pred c-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC----C------CCcEEE
Confidence 3 7899888 899999 8888 8889999999999999999986 333322211111 1 223678
Q ss_pred ecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHh-cc--cCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKM-SS--FGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~-~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
.|+||.+ .|.|.||++++++ .+....... .. .++.+.....+++..+.... +..+++..
T Consensus 252 ~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~~~~~~~~ 327 (483)
T 1rv3_A 252 TTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--TPEFKEYQ 327 (483)
T ss_dssp EESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--SHHHHHHH
T ss_pred ecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--ChhHHHHH
Confidence 9999987 6889999999764 122222221 11 12233333333333332110 12246677
Q ss_pred HHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEE
Q 011801 327 KRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWF 401 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~ 401 (477)
+++.++++.+.+.|.+.|+++..+. .+.++|++++... ...+ ++ ...+++.||.+. ||..+. -+++++
T Consensus 328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g----~~~~-~~-~~~L~~~gI~v~~~~~pg~~~~-~~~~~i 400 (483)
T 1rv3_A 328 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG----TDGG-RA-EKVLEACSIACNKNTCPGDKSA-LRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT----CCHH-HH-HHHHHHTTEECEEECCSSCSCT-TSCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC----CCHH-HH-HHHHHhCCcEEecCCCCCCCcC-CCCceE
Confidence 7888899999999999999887653 3468899987421 1111 23 445677899999 987422 246799
Q ss_pred EEEeccC-C----HHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANM-D----DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~-~----~e~l~~~l~~l~~~~~~ 426 (477)
||+++.. + ++++++++++|+++++.
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9999754 4 89999999999999875
No 159
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=6.8e-26 Score=229.55 Aligned_cols=285 Identities=16% Similarity=0.176 Sum_probs=196.4
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~ 156 (477)
.|++ .+..++++++|++++ . ++.|++++| ++|+.+++.++.++||.|+++.|+|++.... ++..
T Consensus 48 ~~~~-~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~- 115 (386)
T 1cs1_A 48 RRGN-PTRDVVQRALAELEG--------G-AGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG- 115 (386)
T ss_dssp TTCC-HHHHHHHHHHHHHHT--------C-SEEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-
T ss_pred CCCC-ccHHHHHHHHHHHhC--------C-CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhc-
Confidence 3443 357899999999997 2 256777666 8999999999999999999999999975443 2444
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|.+++.++.+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+++
T Consensus 116 g~~~~~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 116 CYRVLFVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp SCEEEEECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCEEEEeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 8999888753 78999998864 7899999999999999998 888999999999999999999865
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHhcC
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASMLS 313 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~L~ 313 (477)
.+.. +. . .+.++++.|+||.+|.+|.|+ ||++++++.+.+.+... ..+ +..++..++++...+.
T Consensus 180 ~~~~----~~-~--------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 180 ALQN----PL-A--------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp TTCC----GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred ccCC----cc-c--------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 4321 11 1 145688999999999899997 99999775554444433 222 3356677776655554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ce-EecC----------------CceEEEEeeccchhhccCchHHHHH
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-IN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l 375 (477)
. +....+.+.++.+.+.+.|+++. +. +..+ ..|.++.+.++.. . +.
T Consensus 247 ~-------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~ 310 (386)
T 1cs1_A 247 T-------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-------E--QT 310 (386)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-------H--HH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-------H--HH
Confidence 3 23334455566677777776652 21 1111 1244666666531 1 12
Q ss_pred HHHHHHhcCeEEeCCCCCC--------------C-----------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQ--------------C-----------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~--------------~-----------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
....+.+.||.+++++ ++ + ..++++|++++. ++.++.+++|.+++++
T Consensus 311 ~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 311 LRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp HHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 3445667899887431 11 1 125899999986 3445555555555543
No 160
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=2.2e-26 Score=233.97 Aligned_cols=293 Identities=13% Similarity=0.140 Sum_probs=200.7
Q ss_pred HHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCc--EEEEEeccC
Q 011801 93 QAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGV--QIVPVHCDI 167 (477)
Q Consensus 93 ~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~--~~~~v~~~~ 167 (477)
++++++++ .+++.|++++| ++|+.+++.++.++||.|+++.|+|+.+... +... |. +++++++++
T Consensus 76 ~~la~~~g--------~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 145 (405)
T 2vi8_A 76 ERAKQLFG--------AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDP 145 (405)
T ss_dssp HHHHHHHT--------CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCT
T ss_pred HHHHHHhC--------CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhc-cceeEEEeccccc
Confidence 46777664 33444555666 9999999999999999999999999887541 1222 44 777787653
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.++.+|+++|++++++. ++++|++ +|+|+ |...+ +++|.++|+++|+++|+||+|+...........
T Consensus 146 -~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-- 212 (405)
T 2vi8_A 146 -ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN-- 212 (405)
T ss_dssp -TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--
T ss_pred -ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCCC--
Confidence 36789999999998753 5777766 56554 45545 889999999999999999999842221111111
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhc-cc--CCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMS-SF--GLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~-~~--~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
.+ . ..+ ++++|+||.+| .+| ||++++ +.+.+.+.... .+ +..+.....++...+.... +.+++
T Consensus 213 ~~-~----~~d--i~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~ 279 (405)
T 2vi8_A 213 PV-P----YAH--FVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--QDDFK 279 (405)
T ss_dssp ST-T----TCS--EEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHH
T ss_pred cc-c----cCC--EEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH--hhhHH
Confidence 11 1 122 78899999997 566 999996 44555444432 22 2222333333344443211 23467
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC----CCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS----FQCTEP 398 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~----f~~~~~ 398 (477)
+..++++++++++.+.|++.|+++..+ ..++++|++++... .. ..++.+.+ .++||.++||.. +....+
T Consensus 280 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~ 353 (405)
T 2vi8_A 280 AYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ----LT-GKTAEKVL-DEVGITVNKNTIPYDPESPFVT 353 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT----CC-HHHHHHHH-HHHTEECEEECCTTCSSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC----CC-HHHHHHHH-HHcCceeccCcCccccCCCCCC
Confidence 778888999999999999989888764 45789999987421 01 12354444 567999999863 333346
Q ss_pred CEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 399 GWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 399 ~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
+++|++++. ++++++++++++|++++++.
T Consensus 354 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 789999984 58999999999999999764
No 161
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=4.8e-27 Score=232.63 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEecc
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHCD 166 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~~ 166 (477)
++++++|++++ .+ +.|++++| ++|+.+++.++.++||.|+++.|+|+++...+.. ..|++++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM- 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-
Confidence 68999999987 22 45555555 8999999999999999999999999988766532 23999988875
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCeEEEecccccccccCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|++++++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|+...+.. +
T Consensus 71 ------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----~ 131 (331)
T 1pff_A 71 ------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----P 131 (331)
T ss_dssp ------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----G
T ss_pred ------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC----h
Confidence 367788887753 7899999999999999998 8889999999 999999999998543321 1
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
. ..+.++++.|+||.+|.||.| +||++++++.+.+.++..... +..++..++++...+...
T Consensus 132 ~---------~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 196 (331)
T 1pff_A 132 L---------DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL------ 196 (331)
T ss_dssp G---------GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH------
T ss_pred h---------hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH------
Confidence 1 124568899999999999999 899999763555555554333 246667777665555421
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC---------------CCeEecC---CceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV---------------GINCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~---------------gi~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
....+.+.++.+.+.+.|++. |+++..+ ..+.++++.++. . +.....+++.
T Consensus 197 -~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~~ 265 (331)
T 1pff_A 197 -DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---L-------EKAKKVLDNC 265 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---H-------HHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---H-------HHHHHHHHhC
Confidence 111222223333333333321 2222211 134566777651 1 1244566778
Q ss_pred CeEEeCCCCCC------------------------CCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 384 KLNVSPGSSFQ------------------------CTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 384 gI~v~pg~~f~------------------------~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
||.+++++.-+ ...++++|++++.. ++++++.+++.|+++
T Consensus 266 gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 266 HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99876653111 01258999999875 677777777777643
No 162
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.95 E-value=6.1e-26 Score=234.84 Aligned_cols=357 Identities=10% Similarity=0.013 Sum_probs=214.4
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .+.++ .+.+.+.+.+.. .....|....+..+.+.++++.+.+..+. ..
T Consensus 58 ~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 121 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV-------------GDFTHTCFMVTPYEGYVAVCEQLNRLTPV---RG 121 (451)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------TTCSCCTTTTSCCHHHHHHHHHHHHHSSC---CS
T ss_pred CCCCEEEEcCCCccccccCCCCHHHHHHHHHHH-------------HhcccccCCccCCHHHHHHHHHHHHhCCc---CC
Confidence 445668999876 55553 455666555431 12233443345567777777777765431 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC--CCc-c
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS--NNF-K 172 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~~f-~ 172 (477)
+++|++|+|+++|++.+++.+.. .++.|++.+|+|+++...+...++. .+..++.... +.+ .
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFG 201 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence 57999999999999999977643 4589999999999876544322111 3444443210 000 0
Q ss_pred c--------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 173 I--------TREALEAAYERAQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 173 i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+ +++.+++++++.. +.+..++++++|.|++| ...+.+.+++|.++|++||++||+||+|.++...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 202 KELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 1 2444445554321 11334567778877766 3447777999999999999999999999986554432
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.... .. +..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..++++|.++.++|+..+- ++
T Consensus 280 -~~~~-~~---~~~pd----i~t~sK~l~-~G~~iG~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~ 347 (451)
T 3oks_A 280 -FACE-HE---GIDPD----LIVTAKGIA-GGLPLSAVTGRA-EIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EG 347 (451)
T ss_dssp -SGGG-GG---TCCCS----EEEECGGGG-TTSSCEEEEEEH-HHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TT
T ss_pred -hhhh-hc---CCCCC----eeeehhhhh-CCcceEEEEECH-HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hh
Confidence 2211 11 11222 238999998 599999999954 444433322 22234678889888887763211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
++++.++.....++.+.+.+.+.+........|+|+|+.+.... .........++++.+++ +||.+.|+..| .+
T Consensus 348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~ 422 (451)
T 3oks_A 348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GN 422 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CC
Confidence 22333333333333344444444332222334578888884310 00111122346666664 59999998655 35
Q ss_pred EEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++|++++.. +++++++++++|++++++
T Consensus 423 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 423 VVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 899998754 899999999999999864
No 163
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=4.1e-26 Score=235.85 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=216.0
Q ss_pred CCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+||++.+. +.++ ++.+.+++.+.-. ... +... .+..++++++++.+.+..+ .+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~~l~~~la~~~~----~~ 109 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLS-------------TLD-YSPGFQYGHPLSFQLAEKITDLTP----GN 109 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTT-------------TCS-CCCSSSCCCHHHHHHHHHHHTTSS----TT
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHH-------------hCC-CccccccCCHHHHHHHHHHHHhCC----CC
Confidence 344578887655 4442 3556666655311 111 1111 2334555666666655433 35
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHH-HHhhh-------------CCcEEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDR-DLSWR-------------TGVQIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~-~~~~~-------------~g~~~~~v~~~~~ 168 (477)
+++|++|+|+++|+++++.++.. +||.|++.+|+|+++.. .+... .|+..++++....
T Consensus 110 ~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (449)
T 3a8u_X 110 LNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189 (449)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGG
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcccc
Confidence 78999999999999999988753 67999999999988643 33322 1234444432111
Q ss_pred CCc-ccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 169 NNF-KIT--------REALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 169 ~~f-~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+| .+| +++|++++++.. ..++++ ++++|+ ||||. +.+++++++|.++|+++|++||+||+|.++.
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 190 NAYSRGMPKEGGIALADELLKLIELHD--ASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp GTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CccccCChHHHHHHHHHHHHHHHHhcC--CCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 111 245 899999887421 025554 556675 67997 5578999999999999999999999998654
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-----------cccCCCchHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-----------SSFGLVSSQTQ 305 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-----------~~~~~vs~~~q 305 (477)
+.+.. .... ... ..++ ++ ||||.++ +| +|+||+++++ .+.+.+... ......+++++
T Consensus 267 ~~g~~-~~~~-~~~---~~~d--i~--s~sK~l~-~G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (449)
T 3a8u_X 267 RTGSM-FGAD-SFG---VTPD--LM--CIAKQVT-NGAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335 (449)
T ss_dssp TTSSS-SHHH-HHT---CCCS--EE--EECGGGG-TTSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred ccCcc-hhhh-hcC---CCCC--EE--EEccccc-CCCCceEEEEECH-HHHHHhhccCcccccccccccCCCcccHHHH
Confidence 43332 1222 211 1223 22 8999998 68 9999999865 455544432 11123567788
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 306 YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 306 ~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
.++.+.|+..+ + .+..++++++.+.+.+.|++++ +.. ..+..|+|+|++++....... ....++.+.+++
T Consensus 336 aa~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~~- 408 (449)
T 3a8u_X 336 AAGLAALCLLQ---K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALWK- 408 (449)
T ss_dssp HHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHHH-
Confidence 77777775321 1 1234556666677777776642 221 112356899999975321110 011246677765
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.||.++|+ + +++||++.. .+++++++++++|++++++
T Consensus 409 ~Gv~v~~~------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 409 AGFYVRFG------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp HTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEecC------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 59999987 1 689999753 4999999999999999865
No 164
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.95 E-value=2.8e-26 Score=233.94 Aligned_cols=193 Identities=24% Similarity=0.276 Sum_probs=147.3
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~ 156 (477)
+|+. .+..+|++++|++++. .+.|++++| ++|+..++. ++++||.|+++.|.|++.... ++..
T Consensus 63 r~~~-p~~~~l~~~la~~~g~---------~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~- 129 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDGA---------KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEF- 129 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHTC---------SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGG-
T ss_pred CCCC-chHHHHHHHHHHHhCC---------CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHc-
Confidence 4443 3568999999999972 256777766 589999998 899999999999999975443 3445
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-eEEEecccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN-IHLVCDEIYAA 235 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~-~~lI~De~y~~ 235 (477)
|++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|+.
T Consensus 130 G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 130 GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999998864 68888888753 7899999999999999998 888999999999 99999999986
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L 312 (477)
..+.. + + ..+.+++++|+||.+|.+| .|+||++++++.+.+.++... .++ ..+++.++++...+
T Consensus 194 ~~~~~-~---~---------~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l 260 (403)
T 3cog_A 194 PYFQR-P---L---------ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGL 260 (403)
T ss_dssp TTTCC-T---T---------TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred cccCC-c---c---------ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 54321 1 1 1245688999999999776 479999997666655554332 233 35778888877777
Q ss_pred CCh
Q 011801 313 SDD 315 (477)
Q Consensus 313 ~~~ 315 (477)
...
T Consensus 261 ~~l 263 (403)
T 3cog_A 261 KTL 263 (403)
T ss_dssp TTH
T ss_pred hHH
Confidence 653
No 165
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=1.3e-26 Score=238.44 Aligned_cols=345 Identities=10% Similarity=0.040 Sum_probs=207.7
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+. |.++ ++.+.+.+.+..+. + ....|+ .....+|++++++++. +
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~------~-----~~~~~~-~~~~~~l~~~la~~~~---------~ 110 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN------G-----VLYGTP-TALEVKFAKMLKEAMP---------A 110 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH------C-----SCCSSC-CHHHHHHHHHHHHHCT---------T
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh------C-----cCCCCC-CHHHHHHHHHHHHhCC---------C
Confidence 4456688987664 5553 46666665542110 0 012243 2345677777777753 3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc------------cCHH
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK------------ITRE 176 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~------------i~~~ 176 (477)
+++|++|+|+++|++.+++.+.. +++.|++.+|+|+++...+....|.....+......++. -|++
T Consensus 111 ~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 190 (434)
T 3l44_A 111 LDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVE 190 (434)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHH
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHH
Confidence 78999999999999999987654 679999999999887654433323322211111111110 1789
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc
Q 011801 177 ALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~ 254 (477)
+|++++++. ..++++ ++++|+ |++|.+. +++.+++|.++|++||++||+||+|.++ ..+.. ... +...
T Consensus 191 ~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~-~~~-~~~~--- 260 (434)
T 3l44_A 191 TLKEALDKW---GHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYG-GAQ-DLLG--- 260 (434)
T ss_dssp HHHHHHHHH---GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSS-CHH-HHHT---
T ss_pred HHHHHHHhC---CCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecccc-HHH-HHcC---
Confidence 999988753 124554 555564 5566655 8889999999999999999999999986 33322 111 1211
Q ss_pred CCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcC---ChhhHHHHHHHHH
Q 011801 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLS---DDEFVDNFLVETS 326 (477)
Q Consensus 255 ~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~ 326 (477)
..++ +.||||.+| +|+|+||+++++ .+.+.+.+ ....+..++++|.++.+.|+ +.++ +++.+
T Consensus 261 ~~~d----i~t~sK~~~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~----~~~~~ 330 (434)
T 3l44_A 261 VTPD----LTALGKVIG-GGLPIGAYGGKK-EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGL----YEKLD 330 (434)
T ss_dssp CCCS----EEEEEGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH----HHHHH
T ss_pred CCCC----eeehhhhhc-CCcCeeeEEEcH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccH----HHHHH
Confidence 1222 348999999 999999998854 44444333 12223467788887777665 3232 22222
Q ss_pred HHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh-------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 327 KRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK-------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~-------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+.....++.|.+.+.+.++....+..|+|+++.+..... ........++++.+++ .||.++|+. .+
T Consensus 331 ~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~ 403 (434)
T 3l44_A 331 ELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YE 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CC
Confidence 222222233333334445433333445677777742110 0011112345666655 599999874 24
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+++. .+++++++++++|++++++.+
T Consensus 404 ~~rl~~~-~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 404 AWFLTTE-HTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp CEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecc-cCHHHHHHHHHHHHHHHHHHH
Confidence 5888764 499999999999999997643
No 166
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.95 E-value=1.7e-26 Score=238.73 Aligned_cols=350 Identities=11% Similarity=0.027 Sum_probs=210.1
Q ss_pred CCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .+.+ +.+.+.+.+.+.- .....|....+..+.++++++++.+..+ .+
T Consensus 41 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 103 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHGHRKKELDDAIKKQL-------------GKIAHSTLLGMTNVPATQLAETLIDISP----KK 103 (448)
T ss_dssp TTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHH-------------TTCSCCCCSSSEEHHHHHHHHHHHHHSC----TT
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 345668898765 3444 3455666555421 1222233334556777888888776543 34
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC----CC----CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN----PG----DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~----~G----d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (477)
.++|++|+|+++|++.+++++.. +| |.|++.+|+|+++........|. .+..++.+ +.
T Consensus 104 ~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 181 (448)
T 3dod_A 104 LTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YV 181 (448)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--cc
Confidence 58999999999999999988765 44 99999999998876443322221 12233322 22
Q ss_pred ccc-----------CHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 171 FKI-----------TREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 171 f~i-----------~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
|+. |+++|+++++.. ..++++|++..++ |++|. +.+.+.+++|.++|++||++||+||+|.++.
T Consensus 182 ~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g 258 (448)
T 3dod_A 182 YRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258 (448)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 332 378888888732 2256666665555 78884 5678889999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-------h--cccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-------M--SSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-------~--~~~~~vs~~~q~~ 307 (477)
..+..+ .. +.. +..++ +.+|||.+| +| +|+||++++++ +.+.+.+ . ......++++|.+
T Consensus 259 ~~g~~~-a~-~~~---~~~~d----i~t~sK~l~-~G~~~ig~v~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 327 (448)
T 3dod_A 259 RTGKMF-AC-EHE---NVQPD----LMAAGKGIT-GGYLPIAVTFATED-IYKAFYDDYENLKTFFHGHSYTGNQLGCAV 327 (448)
T ss_dssp TTSSSS-GG-GGG---TCCCS----EEEECGGGG-TTSSCCEEEEEEHH-HHHTTCSCGGGCCCCCCCCTTTTCHHHHHH
T ss_pred cccchh-hh-hhc---CCCCC----EEEeccccc-CCcCceEEEEECHH-HHHHhhhccccCCcccccCCCCcCHHHHHH
Confidence 555433 11 111 11222 337899998 69 59999999554 5444433 1 1223367788888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-CchH----HHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-TLEG----EIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~~~~----e~~l~~~ll~~ 382 (477)
+.+.|+..+- ++.+++.++..+..++.+.+ +.+.+........|+|+|+.++...... .+.. ..++++.++++
T Consensus 328 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (448)
T 3dod_A 328 ALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL 405 (448)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC
Confidence 8887763211 12233333333334444544 5444432222334578899887532210 0100 13566777654
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
||.+.|+ .+++|++++. .+++++++++++|++++++.
T Consensus 406 -Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 406 -GMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp -TEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999887 2689997654 49999999999999999764
No 167
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.95 E-value=3.9e-26 Score=235.51 Aligned_cols=330 Identities=13% Similarity=0.104 Sum_probs=218.0
Q ss_pred CCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||+..+.+ .+ +.+.+.+++.+.-+... . ....|+ .....++++.++++++ +
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-------~--~~~~~~-~~~~~~l~~~la~~~g----------~ 133 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-------L--TSRAFY-NNVLGEYEEYITKLFN----------Y 133 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-------C--CCTTSE-ESSHHHHHHHHHHHHT----------C
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-------c--ccCccC-CHHHHHHHHHHHHhcC----------C
Confidence 3456789887654 33 34556666655311100 0 001232 2345788888888764 5
Q ss_pred CcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCccchHH-HHhhhCC------------cEEEEEeccCC
Q 011801 112 DRIVMGGGATGANELIMFCLA---------NPG-DAFLVPSPYYAAFDR-DLSWRTG------------VQIVPVHCDIS 168 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~---------~~G-d~vlv~~P~y~~~~~-~~~~~~g------------~~~~~v~~~~~ 168 (477)
++|++++|+++|++.++.++. .+| |.|++.+|+|++... .+... | .+++.++.+
T Consensus 134 ~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~-g~~~~~~~~~p~~~~v~~~~~~-- 210 (439)
T 2oat_A 134 HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSS-TDPTSYDGFGPFMPGFDIIPYN-- 210 (439)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTC-CCHHHHTTSCSCCTTEEEECSS--
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcC-CChhcccCCCCCCCCeEEeCCC--
Confidence 789999999999999998864 467 899999999987643 33332 4 355666532
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
|+++|++++++ .++++|+ ++|. |++|. ..+.+.+++|.++|++||+++|+||+|.++...+..+ ..
T Consensus 211 -----d~~~le~~l~~-----~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~ 278 (439)
T 2oat_A 211 -----DLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AV 278 (439)
T ss_dssp -----CHHHHHHHTTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG
T ss_pred -----CHHHHHHHhCC-----CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-hH
Confidence 78999888751 2676555 5564 67896 5688999999999999999999999998754444322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
+.. +..++ ++ ||||.+| +| +|+||++++++ +.+.+... ......+++++.++.+.|+..+ + +
T Consensus 279 -~~~---~~~~D--i~--t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~ 343 (439)
T 2oat_A 279 -DYE---NVRPD--IV--LLGKALS-GGLYPVSAVLCDDD-IMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE---E--E 343 (439)
T ss_dssp -GGG---TCCCS--EE--EECGGGG-TTSSCCEEEEECHH-HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--T
T ss_pred -HHh---CCCCc--EE--Eeccccc-CCCCCeEEEEECHH-HHhccCCCCcccCCCcCHHHHHHHHHHHHHHh---h--h
Confidence 111 11223 22 9999999 79 99999999654 44333221 1222357777777777765321 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
+..++++++++++.+.|+++++++. .+..|+|+|++++.... .. ..++++.+++ +||.+.|+ +++++
T Consensus 344 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~---~~-~~~l~~~l~~-~Gv~v~~~------~~~~i 412 (439)
T 2oat_A 344 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD---WD-AWKVCLRLRD-NGLLAKPT------HGDII 412 (439)
T ss_dssp THHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS---CC-HHHHHHHHHH-TTEECCBS------SSSEE
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc---HH-HHHHHHHHHH-CCeEEecC------CCCEE
Confidence 3456677788888889988754421 22356788998874210 11 2256777765 59999884 25789
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. .+++++++++++|++++++
T Consensus 413 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 413 RFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECccCCCHHHHHHHHHHHHHHHHh
Confidence 998864 4999999999999998864
No 168
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.95 E-value=2.1e-26 Score=231.64 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=218.2
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.+++++.+.+.+.. +.+.+.+.. ....|.+..+..++++++|++++ .+++++++
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~ 60 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREFI--------------KTADFTLGAELEKFEKRFAALHN----------APHAIGVG 60 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHHH--------------HHTCCSSCHHHHHHHHHHHHHTT----------CSEEEEES
T ss_pred eeeccccCCCCchH--HHHHHHHHH--------------HcCCcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 46888888776665 555544421 11246666788999999999986 23789999
Q ss_pred ChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 119 GATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 119 G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+++|+.+++.++ .++||.|+++.|+|+++...++.. |.+++.++++ .++.+|++++++++++ ++++|+
T Consensus 61 ~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQA-GATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM- 130 (374)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE-
Confidence 9999999999999 999999999999999999888876 9999999987 4678999999988753 677766
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCcccHHHhhhhccCCCCcEEEEecCC--cccCCCC
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPG 274 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G 274 (477)
|+||||.+.+ +++|.++|+++|+++|+||+|+... ++.... .....+++.|+| |.+|.+|
T Consensus 131 --~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~------------~~~~d~~~~s~~~~K~l~~~g 193 (374)
T 3uwc_A 131 --PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKFV------------GSWGQFACFSLHPLKNLNVWS 193 (374)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET------------TSSSSEEEEECSSSSSSCCSS
T ss_pred --EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCeec------------cccccEEEEeCCCCCcCCccc
Confidence 8999999988 8888899999999999999998431 222110 001236677866 9998547
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccC--------------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFG--------------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL 340 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~--------------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L 340 (477)
. .|+++++++.+.+.+......+ .++.....+....+. . +++..++.++..+.+.+.|
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~--~-----~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 194 D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN--Q-----LETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG--G-----HHHHHHHHHHHHHHHHHHT
T ss_pred e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHh
Confidence 5 8999998877766555443211 122333322222221 1 2334455566667788888
Q ss_pred hhCC--CeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC--CCC-------------------
Q 011801 341 EQVG--INCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF--QCT------------------- 396 (477)
Q Consensus 341 ~~~g--i~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f--~~~------------------- 396 (477)
.+.+ +.+.. +..+...|+.++-... +..++.+.+. ++||.++++... ++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (374)
T 3uwc_A 266 VDLSEFIDVPVRREGVYHVFHIYVLRVK-----YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKH 339 (374)
T ss_dssp GGGTTTEECCCCCTTEECCCSSEEEEET-----THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHH
T ss_pred ccCCCeEEeccCCCCCceeeEEEEEEcC-----CHHHHHHHHH-HCCCccccCCCCccccChhhhhcCCccCCCccHHHH
Confidence 8774 54432 2222232222211000 1124555554 569999988511 100
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..+.+|+++.. .++++++.++++|++++++
T Consensus 340 ~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 340 GEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 01689998865 4999999999999999976
No 169
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=1.4e-26 Score=234.84 Aligned_cols=323 Identities=15% Similarity=0.197 Sum_probs=213.9
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC-CCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..+++.++.+.+.++... .+.+.+. + ....|+ +..+..++|+++|++++ .++++
T Consensus 21 ~~~~~~l~~~~p~~~~~~-~~a~~~~-------------~-~~~~~~~~~~~~~~l~~~la~~~~----------~~~~i 75 (391)
T 3dr4_A 21 MSDLPRISVAAPRLDGNE-RDYVLEC-------------M-DTTWISSVGRFIVEFEKAFADYCG----------VKHAI 75 (391)
T ss_dssp -------CCCCCCCCSSH-HHHHHHH-------------H-HHTCCSSCSHHHHHHHHHHHHHHT----------CSEEE
T ss_pred cCCCceeccCCCCCCHHH-HHHHHHH-------------H-HcCCccCCChHHHHHHHHHHHHhC----------CCcEE
Confidence 457888888887666333 3333321 0 112354 55688999999999997 23788
Q ss_pred EeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+++|+++|+.+++.++ .++||.|+++.|+|+++...++.. |.+++.++++. ++|.+|+++|++++++ ++++
T Consensus 76 ~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~ 147 (391)
T 3dr4_A 76 ACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC-GATPVLVDNDP-RTFNLDAAKLEALITP------RTKA 147 (391)
T ss_dssp EESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTCSBCGGGSGGGCCT------TEEE
T ss_pred EeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC-CCEEEEEecCc-cccCcCHHHHHHhcCC------CceE
Confidence 8999999999999999 899999999999999999888876 99999999874 4688999999988753 7887
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCcccHHHhhhhccCCCCcEEEEecCC--cccC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMG 271 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g 271 (477)
|+ |+||||...+ +++|.++|+++|+++|+|++|+.. .+.+.. ... ..+ +.+.||| |.+
T Consensus 148 v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~-------~~d--i~~~S~s~~K~l- 208 (391)
T 3dr4_A 148 IM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKK---SGS-------LGD--CATFSFFGNAII- 208 (391)
T ss_dssp EC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTS-------SSS--EEEEECBTTSSS-
T ss_pred EE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCee---ecc-------cCC--EEEEECCCCCcC-
Confidence 66 5689999988 788899999999999999999842 222211 000 112 5667776 766
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhcccC----------------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSSFG----------------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~~~----------------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
+|.+.|+++++++.+.+.++.....+ .++.+...+ .+.... .+++..++.++..++
T Consensus 209 -~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~--~~~~~~-----~~~~~~~~~~~~~~~ 280 (391)
T 3dr4_A 209 -TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAI--GLAQLE-----RVDEHLAARERVVGW 280 (391)
T ss_dssp -CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHH--HHHHHH-----THHHHHHHHHHHHHH
T ss_pred -CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHH--HHHHHH-----HHHHHHHHHHHHHHH
Confidence 45679999998877766655443222 122222222 121111 134445556667778
Q ss_pred HHHHHhhCCCeEecC------Cce-EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC-CCC-----------
Q 011801 336 FTKGLEQVGINCLKS------NAG-LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF-QCT----------- 396 (477)
Q Consensus 336 l~~~L~~~gi~~~~~------~~g-~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f-~~~----------- 396 (477)
+.+.|.+.|+.+..+ ..+ +.+++.++.. .... ..++.+.+. +.||.+++|... ++.
T Consensus 281 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~~~~ 355 (391)
T 3dr4_A 281 YEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEG---LSTT-RDQVIKDLD-ALGIESRPVFHPMHIMPPYAHLATDDL 355 (391)
T ss_dssp HHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSS---CSSC-HHHHHHHHH-HTTCCCEECCCCGGGSGGGGGGCCTTC
T ss_pred HHHHhhcCCccccCcCCCCCCcceeEEEEEEECCc---cchh-HHHHHHHHH-HCCCceeecCCccccChhhhhcCcCCC
Confidence 888888878776654 122 2356666631 0111 124666655 459999988521 110
Q ss_pred ------CCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 397 ------EPGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 397 ------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
..+.+|+++.. +++++++.++++|++++
T Consensus 356 ~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 356 KIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 13479998865 49999999999998764
No 170
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.95 E-value=8.3e-26 Score=233.56 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=215.6
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC---CCCcHHHH--HHHH-HHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD---YHGLPEFR--QAVA-KFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr--~aia-~~~~~~~g~~~~~~~~ 112 (477)
++|+|..++|+.++. +.+.+.+.... .....|+. +.|...++ ++++ +++.+..| .+
T Consensus 46 ~~i~l~~~~~~~~~~-v~~a~~~~~~~-----------~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g----~~-- 107 (447)
T 3h7f_A 46 DTLEMIASENFVPRA-VLQAQGSVLTN-----------KYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG----AE-- 107 (447)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CS--
T ss_pred CceeEecCCCCCCHH-HHHHHHHHhcC-----------CccccCCcccccCccHHHHHHHHHHHHHHHHHcC----CC--
Confidence 568888888877444 44444332100 00012221 23444444 4444 55554444 22
Q ss_pred cEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH-H--Hhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAAFDR-D--LSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~-~--~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.+.+ ++|+++|+..++.++++|||.|++++|+|+++.. . +... .+..+++++++. +++.+|+++|++++++.
T Consensus 108 ~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 108 FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEF-- 184 (447)
T ss_dssp EEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHH--
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhc--
Confidence 3444 7788899999999999999999999999987321 1 1111 145677777664 35789999999998653
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||++. ++++|.++|+++|++||+||+|. ++.+.+.. .+.. + ...+++.|+
T Consensus 185 ---~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~-~~~~---~------~~di~~~s~ 246 (447)
T 3h7f_A 185 ---RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLH-PSPV---P------HADVVSTTV 246 (447)
T ss_dssp ---CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-CCST---T------TCSEEEEES
T ss_pred ---CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCC-CCCC---C------CCcEEEecC
Confidence 6788899999999887 48899999999999999999974 33343322 1111 1 123678999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV- 343 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~- 343 (477)
||.+ +|+|.||++++++.+.........+ +......+.+++..+... .+..+++..+++.++++.+.+.|.+.
T Consensus 247 sK~l--~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 322 (447)
T 3h7f_A 247 HKTL--GGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAPD 322 (447)
T ss_dssp SGGG--CCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred CcCC--CCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988 4889999999665433332222222 222222233333333211 01234667778888889999999887
Q ss_pred ----CCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CC
Q 011801 344 ----GINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MD 409 (477)
Q Consensus 344 ----gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~ 409 (477)
|+++.. +..++++|++++... .. .+.+..++++.||.+. |+..+.+..++++|+++.. ++
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~ 396 (447)
T 3h7f_A 323 VAKAGVSVVSGGTDVHLVLVDLRDSP----LD--GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG 396 (447)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECTTSS----CC--HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCC
T ss_pred ccCCCeEEecCCCCCCEEEEEcCCCC----CC--HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCC
Confidence 888765 345678899886421 11 1345667778899998 6643444456789998854 47
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 011801 410 DDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 410 ~e~l~~~l~~l~~~~~~~~~ 429 (477)
++++++++++|++++.+..+
T Consensus 397 ~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 397 DTEFTEVADIIATALATGSS 416 (447)
T ss_dssp HHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 89999999999999976433
No 171
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=2.2e-25 Score=226.53 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=199.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~ 162 (477)
...++++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|.|+++...+ +.. |.++..
T Consensus 67 ~~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~ 135 (392)
T 3qhx_A 67 TRTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhc-CcEEEE
Confidence 46788999999876 247899999999999999999999999999999999876655 445 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+ ..+
T Consensus 136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~~ 198 (392)
T 3qhx_A 136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQP 198 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CCG
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CCh
Confidence 8864 78999988864 8999999999999999988 88899999999999999999974322 111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhcc-c-CCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSS-F-GLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~-~-~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
. ..+..+++.|+||.+|.+| +|+||++++++.+...+..... + ...++..++++...++.-
T Consensus 199 ---~---------~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---- 262 (392)
T 3qhx_A 199 ---L---------SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL---- 262 (392)
T ss_dssp ---G---------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH----
T ss_pred ---H---------HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH----
Confidence 1 1134578999999999777 8999999987666555543322 2 335667777777777652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
....+++.++.+.+.+.|++. ++. +..+ ..|..+++.++... .....+.. .++
T Consensus 263 ---~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~-~l~ 333 (392)
T 3qhx_A 263 ---VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCA-KTN 333 (392)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHH-HCS
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHH-hCC
Confidence 223345556666777777765 332 2111 12567888887421 11112322 234
Q ss_pred hcCeEEeCCCCCC----C--------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 382 DVKLNVSPGSSFQ----C--------------TEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 382 ~~gI~v~pg~~f~----~--------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
..|+.++.|+.+. + ..++.+|||++. |+.+..++.|.+++
T Consensus 334 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 334 IFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp SSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 5577788887643 1 136789999985 45556666666554
No 172
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.94 E-value=9e-26 Score=230.80 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh----hCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW----RTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~----~~g~~~~~v 163 (477)
..+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|+|+++...+.. . |++++.+
T Consensus 83 ~~~l~~~la~~~g----------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v 151 (414)
T 3ndn_A 83 VSVFEERLRLIEG----------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFV 151 (414)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHc-CcEEEEe
Confidence 4566666666654 36789999999999999999999999999999999998766543 5 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|++||+||+|+...+.. +
T Consensus 152 ~~~-------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~- 213 (414)
T 3ndn_A 152 DGD-------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ-G- 213 (414)
T ss_dssp CTT-------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-C-
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC-c-
Confidence 864 68999888753 7899999999999999988 8889999999999999999997432211 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hcccC-CCchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSSFG-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~~~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
. ..+..+++.|+||.+|.+| +|+|+++++++.+...++. ...++ ..+++..+++...+..
T Consensus 214 --~---------~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~------ 276 (414)
T 3ndn_A 214 --F---------PLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET------ 276 (414)
T ss_dssp --G---------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG------
T ss_pred --h---------hcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------
Confidence 1 1134578899999999878 8999999977655434432 23333 2455555544444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CCe-EecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GIN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+....+++.++++.+.+.|++. ++. +..| ..|.++|+.++.... ...+....+... ++.
T Consensus 277 -l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~-l~~ 353 (414)
T 3ndn_A 277 -LAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDK-MRL 353 (414)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHH-CSS
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHh-Ccc
Confidence 2334455566777888888776 332 2211 246789999974200 000111123333 334
Q ss_pred cCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 383 VKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 383 ~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.++.+++|+.+.. ..++++||+++. |+.+.+++.|++++
T Consensus 354 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 354 IDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp SEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred ceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 5777888875532 236799999985 55666677777665
No 173
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.94 E-value=3.5e-26 Score=234.96 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=212.3
Q ss_pred CCCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||++.+. |.++ ++.+.+.+.+..+ .+ ....|+ .....+|++++++++.
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~------~~-----~~~~~~-~~~~~~l~~~la~~~~--------- 107 (429)
T 3k28_A 49 DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE------RG-----TSFGAP-TEIENKLAKLVIERVP--------- 107 (429)
T ss_dssp ETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH------HC-----SCCSSC-CHHHHHHHHHHHHHST---------
T ss_pred ECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh------hC-----cCcCCC-CHHHHHHHHHHHHhCC---------
Confidence 34556789998764 5553 4666666655211 00 011233 3356788888888763
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc------------cCH
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK------------ITR 175 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~------------i~~ 175 (477)
.+++|++|+|+++|++.+++.+.. +++.|++.+|+|+++...+....|.....+......++. -|+
T Consensus 108 ~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (429)
T 3k28_A 108 SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL 187 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH
Confidence 368999999999999999987653 678999999999876654433323322222211111111 078
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 176 EALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
++|++++++.. .++++ ++++|+ |++|.+. +++++++|.++|++||++||+||+|.++ ..+.. ...+...
T Consensus 188 ~~le~~l~~~~---~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~~-- 258 (429)
T 3k28_A 188 ESVKYAFEQFG---DDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYN--CGQGYYG-- 258 (429)
T ss_dssp HHHHHHHHHHG---GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTT--HHHHHHT--
T ss_pred HHHHHHHHhCC---CCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hHHHHhC--
Confidence 99999887531 24555 555554 5566555 6788999999999999999999999876 43322 1112211
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..++++|.++.+.|+..+ ++..++
T Consensus 259 -~~~d----i~t~sK~~~-~G~~iG~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~ 325 (429)
T 3k28_A 259 -VTPD----LTCLGKVIG-GGLPVGAYGGKAE-IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVE 325 (429)
T ss_dssp -CCCS----EEEECGGGG-TTSCCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHH
T ss_pred -CCCc----eehhhhhhc-CCCCeEEEEEcHH-HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHH
Confidence 1122 347999998 6999999999554 4443332 11223467888888888887543 233444
Q ss_pred HHHHHHHHHHHHhh----CCC-eEecCCceEEEEeeccchhh-------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 329 LAKRHHNFTKGLEQ----VGI-NCLKSNAGLFFWMDLRHLLK-------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 329 l~~r~~~l~~~L~~----~gi-~~~~~~~g~~~~~~l~~~~~-------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
++++++++.+.|++ .++ .... ..|.|+++.+..... ........++++.++ +.||.+.|+.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----- 398 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ----- 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-----
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC-----
Confidence 55555555555554 333 2333 345677777743110 011111235666666 4599999873
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 397 EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 397 ~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+.+|+++. .+++++++++++|++++++.
T Consensus 399 -~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 399 -FEGLFLSTV-HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TSCBCCCTT-CCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence 346888765 49999999999999998763
No 174
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=4.3e-26 Score=236.66 Aligned_cols=320 Identities=16% Similarity=0.218 Sum_probs=207.8
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC-----C----CeEEEcCCCccchHHH
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP-----G----DAFLVPSPYYAAFDRD 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~-----G----d~vlv~~P~y~~~~~~ 151 (477)
.|....+..+|++++|++++ .+++++|+|+++|+.+++.++.++ | |.|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57766778999999999986 368999999999999999998888 8 9988774444433334
Q ss_pred HhhhCCcEEEEEec----cCC----CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHh
Q 011801 152 LSWRTGVQIVPVHC----DIS----NNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 ~~~~~g~~~~~v~~----~~~----~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~ 222 (477)
.... |..++.... +.. .++.+|+++|++++++.. ..++++|++++|+||+ |.+++.+++++|.++|++
T Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhcc-CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 4433 666654321 111 245789999999997521 1268999999999998 899999999999999999
Q ss_pred cCeEEEecccccc----------cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCH-H--HH
Q 011801 223 KNIHLVCDEIYAA----------TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFND-T--VV 288 (477)
Q Consensus 223 ~~~~lI~De~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~-~--i~ 288 (477)
||++||+|++++. ..+.+. +...+..+.-...+ +++.|+||.+|+| | ||++++++ . ..
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~ 287 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW---TIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVY 287 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS---CHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHH
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc---cHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHH
Confidence 9999999965542 123332 22222100000123 3578999999977 5 88888766 2 22
Q ss_pred HHHHHhc-------ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeecc
Q 011801 289 NCGRKMS-------SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361 (477)
Q Consensus 289 ~~~~~~~-------~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~ 361 (477)
..++... .++..+.....++...+. ++++ ++..++..++.+.+.+.|++.|+++. +.+++++|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~ 361 (467)
T 2oqx_A 288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--DGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAG 361 (467)
T ss_dssp HHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHH
T ss_pred HHHHHhhhccCCcccccchhhhHHHHHHHhhH--hhhh---HHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEech
Confidence 2222221 112222222222222211 1101 11223345677888888888888877 778899999985
Q ss_pred c---hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------CCCEEEEEecc--CCHHHHHHHHHHHHHHHh
Q 011801 362 H---LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----------EPGWFRVCFAN--MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 362 ~---~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----------~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~ 425 (477)
. ..+...+. ..++++.++.+.||.+.|++.|... ..+++|++++. .+++++++++++|+++++
T Consensus 362 ~~~~~~~~~~~~-~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 362 KLLPHIPADQFP-AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp HHSTTSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCccccc-HHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 3 11211111 2345777757779999996543111 13799999984 589999999999999997
Q ss_pred hhh
Q 011801 426 QDK 428 (477)
Q Consensus 426 ~~~ 428 (477)
+.+
T Consensus 441 ~~~ 443 (467)
T 2oqx_A 441 NAA 443 (467)
T ss_dssp SGG
T ss_pred hhh
Confidence 643
No 175
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=2.4e-25 Score=226.65 Aligned_cols=282 Identities=18% Similarity=0.177 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~ 161 (477)
....++++.++++++ . ++.++++++++|+..++.+++++||.|+++.|.|+++...+ ... |+++.
T Consensus 65 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~ 133 (398)
T 1gc0_A 65 PTLNLLEARMASLEG--------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLR 133 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHc-CCEEE
Confidence 356789999999886 1 24555555589999999999999999999999999887655 444 99998
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+..
T Consensus 134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~- 196 (398)
T 1gc0_A 134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR- 196 (398)
T ss_dssp EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 88753 68888888753 7899999999999999998 8899999999999999999998654321
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhc-c-c-CCCchHHHHHHHHhcCChhh
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMS-S-F-GLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~-~-~-~~vs~~~q~~~~~~L~~~~~ 317 (477)
++ ..+.++++.|+||.+|.+|.|+ ||++++++.+...++... . + +..+++.++++...++..
T Consensus 197 ---~~---------~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 262 (398)
T 1gc0_A 197 ---PL---------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-- 262 (398)
T ss_dssp ---GG---------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--
T ss_pred ---ch---------hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--
Confidence 11 1134588899999999999998 999997665543443322 2 2 346777777776776542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-C--------------eEecC---CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVG-I--------------NCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~g-i--------------~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
....+++.++.+.+.+.|++.+ + ++..+ ..|.++.++++.. .+....+
T Consensus 263 -----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~ 328 (398)
T 1gc0_A 263 -----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---------IGAGRRF 328 (398)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH---------HHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---------HHHHHHH
Confidence 2233444555566666666542 1 11111 1234555666531 1234556
Q ss_pred HHhcCeEEeC---CCCC----------CC-----------CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 380 VNDVKLNVSP---GSSF----------QC-----------TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 380 l~~~gI~v~p---g~~f----------~~-----------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+++.|+.+.. |+.. ++ ..++++||+++.. ++++++.+.+.|+++
T Consensus 329 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 329 MNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 7777887765 4221 01 1257999999864 566666666666543
No 176
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.94 E-value=6.2e-26 Score=232.88 Aligned_cols=337 Identities=11% Similarity=0.058 Sum_probs=206.5
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+. |.++ ++.+.+.+.+.- +....|.. ..++++++++++.+..+ +
T Consensus 49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~---~~~~~~~la~~l~~~~~-----~ 107 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP-----S 107 (427)
T ss_dssp TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST-----T
T ss_pred CCCCEEEECCCchhhhccCCCCHHHHHHHHHHH-------------HhCCCcCC---CCHHHHHHHHHHHHhCC-----C
Confidence 4456689998775 5553 466666665521 11122322 34666666666665433 4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcE-------------------EEEEeccCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQ-------------------IVPVHCDISN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~-------------------~~~v~~~~~~ 169 (477)
+++|++++|+++|++.++.... ..++.|++.+|+|+++...+....|.. ++.++.+
T Consensus 108 ~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (427)
T 3fq8_A 108 IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN--- 184 (427)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC---
Confidence 7899999999999999994321 235789999999987554332221211 2333321
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
|+++|++++++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+.. ...+
T Consensus 185 ----d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~ 254 (427)
T 3fq8_A 185 ----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG--GVQE 254 (427)
T ss_dssp ----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT--HHHH
T ss_pred ----CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hhhH
Confidence 789999988752 225666666655677887665 556999999999999999999999975 43322 1111
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----cccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
... ..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..+++++.++.+.|+ +.++
T Consensus 255 ~~~---~~~d----i~t~sK~~~-~G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~--- 322 (427)
T 3fq8_A 255 KFG---VTPD----LTTLGKIIG-GGLPVGAYGGKR-EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT--- 322 (427)
T ss_dssp HTT---CCCS----EEEECGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH---
T ss_pred hcC---CCCC----hhhhhhhhh-CCcceEEEEEcH-HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCH---
Confidence 111 1222 458999999 899999999854 444443321 1122357788887777664 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc-------cCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-------KTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~-------~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
.++.++..+..++.+.+.+.+.++.......|+++|++++..... .......++++.+++ +||.+.|+..
T Consensus 323 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~- 399 (427)
T 3fq8_A 323 -YEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF- 399 (427)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT-
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC-
Confidence 222222222223334444444454444445678999988642100 011112356666664 5999998753
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 394 QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+|+++. .+++++++++++|++++++
T Consensus 400 -----~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 -----EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -----SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 23555544 3999999999999999864
No 177
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.94 E-value=7.8e-26 Score=234.35 Aligned_cols=341 Identities=9% Similarity=0.029 Sum_probs=213.0
Q ss_pred CCc--cccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 36 NPG--GVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 36 ~~~--~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+ .+||+..+ .|.++ .+.+.+.+.+.-+. +. ......|++ ....+|++.+++++. .
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-------~~-~~~~~~~~~-~~~~~L~e~la~~~~--------~ 133 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------MN-HVMFGGLTH-EPAARLAKLLVDITP--------A 133 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-------CS-CCCSSSEEC-HHHHHHHHHHHHHSS--------T
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh-------cc-CccccccCC-HHHHHHHHHHHHhCC--------C
Confidence 455 78998766 46664 46666655542100 00 000112221 223455555555542 3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDIS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~ 168 (477)
+.++|++|+|+++|++.+++.+.. +| +.|++.+|+|+++........+ ..+..++.+..
T Consensus 134 ~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (457)
T 3tfu_A 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR 213 (457)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS
T ss_pred CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc
Confidence 467999999999999999988754 55 5899999999876544332211 11222332221
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITN-PSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.....|+++|++++++. ..++++|++.. ++||+|.+. +.+.+++|.++|+++|++||+||+|.++...+..+ ..
T Consensus 214 ~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a~ 289 (457)
T 3tfu_A 214 DYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AA 289 (457)
T ss_dssp SCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-TH
T ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-Hh
Confidence 11124788999888753 22677777777 789999876 77789999999999999999999999865544432 22
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-------hcccCCCchHHHHHHHHhcCChhhH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-------MSSFGLVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-------~~~~~~vs~~~q~~~~~~L~~~~~~ 318 (477)
. ... ..++ ++ ||||.+| .| +|+||++++++ +.+.+.. .......+++++.++.+.|+..+-
T Consensus 290 ~-~~~---~~pd-ii---t~sK~l~-gG~~~lG~v~~~~~-i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~- 358 (457)
T 3tfu_A 290 D-HAG---VSPD-IM---CVGKALT-GGYLSLAATLCTAD-VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG- 358 (457)
T ss_dssp H-HHT---CCCS-EE---EECGGGG-TTSSCCEEEEEEHH-HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT-
T ss_pred H-hcC---CCce-EE---EEChhhh-CCCcceEEEEEcHH-HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh-
Confidence 2 111 1223 22 9999997 56 69999999554 4444431 112223677888877777652110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
+...++++++.+++.+.|+++ ++....+. |+|+|++++...+ ..++.+.++++ ||.++|.
T Consensus 359 ----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~~------~~~~~~~l~~~-Gv~v~~~---- 422 (457)
T 3tfu_A 359 ----QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPVD------LAVATPAALDR-GVWLRPF---- 422 (457)
T ss_dssp ----SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCCC------HHHHHHHHHHT-TEECCCB----
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCccc------HHHHHHHHHHC-CeEEEec----
Confidence 112333444555555656543 33333333 5788898874311 23566777655 9999874
Q ss_pred CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 395 CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 395 ~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++|+++... +++++++++++|++++++.
T Consensus 423 ---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 423 ---RNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 25899997654 9999999999999999763
No 178
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.94 E-value=1.7e-25 Score=230.36 Aligned_cols=331 Identities=15% Similarity=0.092 Sum_probs=204.2
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||+..+. +.+ +.+.+.+.+.+.-+... .....|+ .....++++.++++++ +
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g----------~ 122 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT---------ICSRAFF-SVPLGICERYLTNLLG----------Y 122 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-EHHHHHHHHHHHHHHT----------C
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC---------CccCCcC-CHHHHHHHHHHHhhcC----------C
Confidence 345678987754 344 34556666655311000 0001131 1124566666666653 5
Q ss_pred CcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCC
Q 011801 112 DRIVMGGGATGANELIMFCLA---------NPG-DAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISN 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~---------~~G-d~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~ 169 (477)
++|++++|+++|++.++.++. .+| |.|++.+|+|+++...+....| .+++.++.
T Consensus 123 ~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---- 198 (433)
T 1z7d_A 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY---- 198 (433)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT----
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC----
Confidence 799999999999999998753 467 9999999999876543222213 23444442
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.|+++|+++++. .++++| +++| +|++|.+ ++.+.+++|.++|+++|++||+||+|.++...+..+ ..
T Consensus 199 ---~d~~~le~~l~~-----~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~- 267 (433)
T 1z7d_A 199 ---DDLEALEEELKD-----PNVCAF-IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CV- 267 (433)
T ss_dssp ---TCHHHHHHHHTS-----TTEEEE-EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG-
T ss_pred ---CCHHHHHHHhCC-----CCEEEE-EEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-hh-
Confidence 278999988841 267765 4556 5678975 688899999999999999999999998754444321 11
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
+... ..++ + .||||.+| +| +|+||++++++ +.+.+... ......+++++.++.+.|+..+ + .+
T Consensus 268 ~~~~---~~~d--i--~t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~ 333 (433)
T 1z7d_A 268 HHYN---VKPD--V--ILLGKALS-GGHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N--EK 333 (433)
T ss_dssp GGGT---CCCS--E--EEECGGGG-TTSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred HhcC---CCCC--E--EEECcccc-CCCCCeEEEEECHH-HHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--cc
Confidence 1111 1223 2 28999999 89 99999999654 44333221 1112357777877777765321 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhC--CCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 325 TSKRLAKRHHNFTKGLEQV--GINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~--gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
..++++++++++.+.|+++ +++. .....|+|+|++++... . ...++++.+++ .||.+.|+ ++++
T Consensus 334 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~--~---~~~~~~~~l~~-~Gv~v~~~------~~~~ 401 (433)
T 1z7d_A 334 LCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL--V---NVLDICLKLKE-NGLITRDV------HDKT 401 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT--C---CHHHHHHHHHH-TTEECCEE------TTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh--h---HHHHHHHHHHH-CCeEEecC------CCCE
Confidence 3445556666676666654 3321 12234678999887420 0 12256677765 59999885 2578
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 401 FRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 401 ~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|++++. .+++++++++++|++++++.
T Consensus 402 iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 402 IRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 9998875 49999999999999998753
No 179
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.94 E-value=3.2e-25 Score=229.43 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=218.0
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc-----EEEeCChHHHHHHHHHHhcC--------CC-----CeEEEcC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-----IVMGGGATGANELIMFCLAN--------PG-----DAFLVPS 142 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-----i~~t~G~t~al~~i~~~l~~--------~G-----d~vlv~~ 142 (477)
.|..+.+..++++++++++.+..| +++++ +++|+|+|+|+.+++.++.+ +| +.|++++
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 355556778889999888888776 34444 99999999999999888754 55 5899999
Q ss_pred CCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 143 P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
+|..+...++.. |++++.++++. ++|.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|++
T Consensus 148 -~h~~~~~~~~~~-G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHH
T ss_pred -CcHHHHHHHHHc-CceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence 999898888877 99999999874 4689999999998864 7899999999999999988 7788888888
Q ss_pred c------CeEEEeccccccccc---CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHH
Q 011801 223 K------NIHLVCDEIYAATVF---SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGR 292 (477)
Q Consensus 223 ~------~~~lI~De~y~~~~~---~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~ 292 (477)
+ |+++++|++|++++. ..+..... . ..+...++.|++| +++.|.++||+++.++.. ...+.
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----~----~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~ 286 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF----R----LPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQELV 286 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST----T----STTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGGC
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhCccchhhc----C----CCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHhc
Confidence 5 999999999987532 22110110 0 1244567789999 556999999999976532 22221
Q ss_pred HhcccC-----------CC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----Cce
Q 011801 293 KMSSFG-----------LV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAG 353 (477)
Q Consensus 293 ~~~~~~-----------~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g 353 (477)
....+. .. ....|+++...+.. +.+++..+++.++++++.+.|++. ++++..+ ...
T Consensus 287 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~ 361 (452)
T 2dgk_A 287 FNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGR-----EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGI 361 (452)
T ss_dssp EEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBS
T ss_pred cCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCe
Confidence 111111 00 23445555444422 235667778888899999999988 4877643 233
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.++.++++... ..... ..++.+.|. +.||.++...... ..+.+++|++++.. ++++++.+++.|+++++..+
T Consensus 362 ~~v~f~~~~~~-~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 362 PAVCFKLKDGE-DPGYT-LYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp SEEEEEECTTC-CCSCC-HHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcc-cccCC-HHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556665310 00011 124666665 4598654321111 12356899999864 78999999999999887643
No 180
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.94 E-value=6.2e-25 Score=222.90 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=194.1
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
...++++++|++++ . ++.++++++++|+..++.+++++||.|+++.|+|+++... ++.. |++++.
T Consensus 60 ~~~~l~~~la~~~g--------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 128 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEE
Confidence 46789999999986 2 2566677778999999999999999999999999987655 3545 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++. .|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+. .
T Consensus 129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~- 190 (389)
T 3acz_A 129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-K- 190 (389)
T ss_dssp ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-C-
T ss_pred ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-C-
Confidence 885 278888888754 7899999999999999998 888999999999999999999865332 1
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L~~~~~~~ 319 (477)
++ ..+.++++.|+||.+|.+|.|+ ||++++++.+.+.++... .++ ..++..++++...|+...
T Consensus 191 --~~---------~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--- 256 (389)
T 3acz_A 191 --PL---------ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP--- 256 (389)
T ss_dssp --GG---------GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH---
T ss_pred --cc---------ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH---
Confidence 11 1245588999999999999998 999997734444443332 233 356666776666665422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC---------------CeEec---CCceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVG---------------INCLK---SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~g---------------i~~~~---~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
...++..+..+.+.+.|++.+ +.+.. ...|.++.+.++. . +....+++
T Consensus 257 ----~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~--------~~~~~~l~ 322 (389)
T 3acz_A 257 ----IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--F--------EAAKKLME 322 (389)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--H--------HHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--H--------HHHHHHHH
Confidence 122233344455555555432 11111 1124466677753 1 12455677
Q ss_pred hcCeEEeC---C------CCCCC---------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 382 DVKLNVSP---G------SSFQC---------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 382 ~~gI~v~p---g------~~f~~---------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+.||.+.+ | ..+.. ..++++|++++. ++.+.+++.|.++++
T Consensus 323 ~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp TCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred hCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 78988877 3 22211 125799999985 367777888888775
No 181
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=1.3e-24 Score=223.64 Aligned_cols=283 Identities=13% Similarity=0.144 Sum_probs=195.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
..++++++|++++ . .+.|++++|+ +|+.+++.+++++||.|+++.|.|+++... ++.. |++++.+
T Consensus 116 ~~~l~~~lA~l~g--------~-~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~v 184 (445)
T 1qgn_A 116 TVVLEEKISALEG--------A-ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC--------C-CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEEe
Confidence 5689999999986 2 2456666555 999999999999999999999999987653 4445 9999988
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.+ |+++|++++++ ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+..
T Consensus 185 ~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~-- 246 (445)
T 1qgn_A 185 DPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK-- 246 (445)
T ss_dssp CSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred CCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 753 78999999875 66 99999999999999998 7889999999999999999998532211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhcccCC-CchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSFGL-VSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~~~-vs~~~q~~~~~~L~~~~~~~~ 320 (477)
+ . ..+..++++|+||.+|..| .++||++++++.+.........++. .+++..+++...++.
T Consensus 247 --~---~------~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~------ 309 (445)
T 1qgn_A 247 --A---L------ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT------ 309 (445)
T ss_dssp --T---T------TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG------
T ss_pred --c---c------ccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH------
Confidence 1 0 1234578999999998544 4799999965543333222233443 455554555444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CC-eEecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GI-NCLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi-~~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+....+++.++.+.+.+.|++. ++ .+..+ ..|.++++.++... +.-..+... ++.
T Consensus 310 -l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~-l~~ 382 (445)
T 1qgn_A 310 -LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDA-LKI 382 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHH-CSS
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHh-CCC
Confidence 2233344556677788888876 44 33322 13567888887421 111122222 222
Q ss_pred cCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.++.|+.+.. ..++++||+++ .|+++.+++.|++++++
T Consensus 383 ~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 383 PYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp SEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred ceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 3677888876531 12579999998 36799999999988763
No 182
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=2.2e-25 Score=231.50 Aligned_cols=293 Identities=10% Similarity=0.064 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCe---EEEcCCCccchH----HHHhhhCCcEE-
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDA---FLVPSPYYAAFD----RDLSWRTGVQI- 160 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~---vlv~~P~y~~~~----~~~~~~~g~~~- 160 (477)
.++++.+|++++ .++++|++|+|+++++++++.++.++|+. |+++.|+|++.. ..++.. |+++
T Consensus 114 ~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~-G~~~~ 184 (465)
T 3e9k_A 114 ESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLNIE 184 (465)
T ss_dssp HHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc-CCcce
Confidence 568888888876 56889999999999999999999877665 999999998743 345545 8775
Q ss_pred ---EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 161 ---VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 161 ---~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
+.+.. .++++.+|+++|++++++. +.++++|++++|+||||.+++ +++|.++|+++|+++|+|++++.
T Consensus 185 ~~~v~~~~-~~~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~-- 255 (465)
T 3e9k_A 185 ESMRMIKP-REGEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV-- 255 (465)
T ss_dssp HHEEEECC-CTTCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT--
T ss_pred eeeEEEec-CCCCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc--
Confidence 22221 2356789999999999753 237999999999999999999 78888999999999999999973
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------------------
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--------------------- 296 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--------------------- 296 (477)
...+ ..+.+. +..++++|++|.++....++|+++++++.+......+..
T Consensus 256 -g~~~-~~~~~~--------~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 325 (465)
T 3e9k_A 256 -GNVE-LYLHDW--------GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPG 325 (465)
T ss_dssp -TTSC-CCHHHH--------TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred -CCcC-Cchhhc--------CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence 2211 232222 344788999999932233789999866543211100000
Q ss_pred -----cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------CCCeEecCC----ceEEE
Q 011801 297 -----FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-----------VGINCLKSN----AGLFF 356 (477)
Q Consensus 297 -----~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-----------~gi~~~~~~----~g~~~ 356 (477)
.++.+.....++.+.+...+ +..+++.++++.++++++.+.|++ .|+++..+. .|.++
T Consensus 326 ~~~~~~gt~~~~~~~a~~aal~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~ 403 (465)
T 3e9k_A 326 VCGFRISNPPILLVCSLHASLEIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQL 403 (465)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCE
T ss_pred hHHhccCCccHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEE
Confidence 01233344444444443211 112567778888888999999887 577777654 36788
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|+.++. ... ++.+.+. +.||.+.. ..++++|+++ .. .++++++++++.|++++++
T Consensus 404 ~~~~~~--~~~------~l~~~L~-~~Gi~v~~------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 404 TITFSV--PNK------DVFQELE-KRGVVCDK------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEEECC--TTC------CHHHHHH-TTTEECEE------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEecC--CHH------HHHHHHH-HCCEEEec------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 888872 222 3555555 55999873 2368999998 33 4899999999999999875
No 183
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.94 E-value=3.8e-25 Score=230.33 Aligned_cols=350 Identities=10% Similarity=-0.005 Sum_probs=223.4
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .|.++ .+.+.+++.+.- .....+....+..+.++++++++.+..+ .+
T Consensus 51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 113 (476)
T 3i5t_A 51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQA-------------MVLPYASPWYMATSPAARLAEKIATLTP----GD 113 (476)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCCCCCTTTCBCHHHHHHHHHHHTTSS----TT
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccCcccCccCCHHHHHHHHHHHhcCC----CC
Confidence 345668998766 56664 466666665521 1122222224567889999999987654 35
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhCC--------------cEEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRTG--------------VQIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~~ 168 (477)
.++|++++|+++|++.+++.+.. .++.|++.+|+|+++...+....| ...++.|....
T Consensus 114 ~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 193 (476)
T 3i5t_A 114 LNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH 193 (476)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGG
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccc
Confidence 67999999999999999988753 357999999999987654432212 23333332211
Q ss_pred CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 169 NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 169 ~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
+ +..+ +++|++++++.. ..++++|+++.++|++|. +.+++.+++|.++|+++|++||+||+|.++...
T Consensus 194 ~-~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 194 A-GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp C-TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred c-CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 1 2223 678888876421 125777777766788885 788999999999999999999999999986555
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLA 309 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~ 309 (477)
+.. .+..... +..++ + .+|||.+| .| +|+|++++++ .+.+.+... ...+..+++++.++.
T Consensus 271 G~~-~~~~~~~---~v~pd--i--~t~sK~l~-~G~~plg~v~~~~-~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~ 340 (476)
T 3i5t_A 271 GEW-FASEKVF---GVVPD--I--ITFAKGVT-SGYVPLGGLAISE-AVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340 (476)
T ss_dssp SSS-CHHHHTT---CCCCS--E--EEECGGGG-TTSSCCEEEEECH-HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHH
T ss_pred cCc-eeeeccc---CCCcc--h--hhhhhhhc-CCCcCeEEEEECH-HHHHHHhcCCcccccccccCCCCcCHHHHHHHH
Confidence 543 2222111 11233 2 27899998 69 9999999954 455544321 122336788888888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---C-CeEecCCceEEEEeeccchhhc-cCch----HHHHHHHHHH
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---G-INCLKSNAGLFFWMDLRHLLKE-KTLE----GEIALWRTIV 380 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---g-i~~~~~~~g~~~~~~l~~~~~~-~~~~----~e~~l~~~ll 380 (477)
+.|+..+ + ++..++++++.+++.+.|+++ + +....+ .|+|+++++...... ..+. ...++++.++
T Consensus 341 aaL~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (476)
T 3i5t_A 341 ANIELME--R---EGIVDQAREMADYFAAALASLRDLPGVAETRS-VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF 414 (476)
T ss_dssp HHHHHHH--H---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--h---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCceeEEEEecCccccccccchhHHHHHHHHHHH
Confidence 8775321 1 123344455555666666543 2 333343 456778887642111 1111 1234566666
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+ .||.+.|. + +++||+... .+++++++++++|++++++..
T Consensus 415 ~-~Gv~v~~~------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 415 E-LGLIVRPL------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp H-TTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred H-CCCEEEec------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 59999984 1 689999653 499999999999999997643
No 184
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=8.9e-25 Score=223.60 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=202.6
Q ss_pred ccCCCCC----cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhh
Q 011801 81 IFQDYHG----LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWR 155 (477)
Q Consensus 81 ~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~ 155 (477)
.|++..| ..++++.++++++ .+ ++++++++++|+.+++.++ .++||.|+++.|+|+.+...++..
T Consensus 33 ~~~~~~g~~~l~~~l~~~la~~~g--------~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 102 (418)
T 2c81_A 33 ISGYWTGEESMERKFAKAFADFNG--------VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNV 102 (418)
T ss_dssp TTSBCCSSCCHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHHHHHHHhC--------CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHc
Confidence 4666667 4566666666654 22 5667777899999999999 899999999999999999888876
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|.+++.++++. ++|.+|+++|++++++ ++++|+++ ||||...+ +++|.++|+++|++||+||+|+.
T Consensus 103 -g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~ 168 (418)
T 2c81_A 103 -NALPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSH 168 (418)
T ss_dssp -TCEEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCT
T ss_pred -CCEEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccc
Confidence 99999999864 4688999999988753 78888765 58998866 88889999999999999999986
Q ss_pred cc-cCCCCcccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-------------
Q 011801 236 TV-FSSPKFTSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------- 299 (477)
Q Consensus 236 ~~-~~~~~~~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------- 299 (477)
.. +++... .. ..+ +++.|| ||.+|. | |+||++++++.+.+.++.....+.
T Consensus 169 ~~~~~~~~~---~~-------~~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (418)
T 2c81_A 169 GSVWNNQRA---GT-------IGD--IGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGD 234 (418)
T ss_dssp TCEETTEET---TS-------SSS--EEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTC
T ss_pred cCccCCEec---cc-------ccc--eEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccch
Confidence 54 433211 10 112 567788 999995 8 999999976665554443322110
Q ss_pred C--------------chHHHHHHH-HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCc-eEEEE----
Q 011801 300 V--------------SSQTQYLLA-SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNA-GLFFW---- 357 (477)
Q Consensus 300 v--------------s~~~q~~~~-~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~-g~~~~---- 357 (477)
. -...+.++. ..+. .+++..++.++.++++.+.|.++ |+++. .+.+ +.+.|
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 307 (418)
T 2c81_A 235 MQLVKKGDIQGSNYCLSEFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYV 307 (418)
T ss_dssp BSEEECCSSCCCBCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEE
T ss_pred hhccccccccCcCCCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEE
Confidence 0 011122211 1121 13444555566678888899887 77776 3444 33333
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeE---EeCCCCCCC---------------------------CC-------CCE
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLN---VSPGSSFQC---------------------------TE-------PGW 400 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~---v~pg~~f~~---------------------------~~-------~~~ 400 (477)
+.++.... .... ..++.+.+.+++||. +++|..... .- .+.
T Consensus 308 ~~~~~~~~-~~~~-~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (418)
T 2c81_A 308 FRFDPVKF-GGLN-ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQS 385 (418)
T ss_dssp EEECGGGT-TTCC-HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHE
T ss_pred EEEccccc-cccC-HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCE
Confidence 56653100 0011 125666666555999 988752210 00 158
Q ss_pred EEEEecc-C-CHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFAN-M-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~-~-~~e~l~~~l~~l~~~~~~ 426 (477)
+||++.. + ++++++.+++.|++++++
T Consensus 386 lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 386 IVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp EEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 9999953 5 899999999999999875
No 185
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=3e-25 Score=225.56 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=188.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~ 162 (477)
+..++|+++|++++ .+ +.++++++++|+++++. ++++||.|+++.|.|++... .++.. |++++.
T Consensus 56 ~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~ 123 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSF 123 (393)
T ss_dssp HHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTT-CSCCEE
T ss_pred hHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEE
Confidence 46899999999986 12 45555556999999999 89999999999999986544 33444 889888
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc----CeEEEeccccccccc
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK----NIHLVCDEIYAATVF 238 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~----~~~lI~De~y~~~~~ 238 (477)
++++ | ++|++++++ ++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+...+
T Consensus 124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8754 5 777777643 7899999999999999998 88889999999 999999999987654
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-cccC-CCchHHHHHHHHhcCCh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSFG-LVSSQTQYLLASMLSDD 315 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~~-~vs~~~q~~~~~~L~~~ 315 (477)
. . ... .+.++++.|+||.+|.+|+|+ ||+++.++.+.+.+... ..++ ..++..+.++...+..
T Consensus 187 ~--~---~~~--------~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~- 252 (393)
T 1n8p_A 187 S--N---PLN--------FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT- 252 (393)
T ss_dssp C--C---GGG--------GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-
T ss_pred C--C---HHH--------cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-
Confidence 3 1 111 135588999999999999999 99998655555544433 2222 3455555555555543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ce-EecC---------------C--c-eEEEEeeccchhhccCchHHHH
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVG--IN-CLKS---------------N--A-GLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~g--i~-~~~~---------------~--~-g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+....+++.++.+.+.+.|.+.+ +. +..+ . . |..+++.++... ..-..
T Consensus 253 ------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-----~~~~~ 321 (393)
T 1n8p_A 253 ------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAASK 321 (393)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-----HHHHH
Confidence 22333445556666777776653 22 1111 1 2 567888887420 11112
Q ss_pred HHHHHHHhcCeEEeCCC----------CCCC-----------CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 375 LWRTIVNDVKLNVSPGS----------SFQC-----------TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~----------~f~~-----------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+... ++..++.++.|+ .+++ ..++.+|++++.. ++++++.+.++|+++
T Consensus 322 ~l~~-l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 322 FASS-TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHH-CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhh-CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2222 223344555443 2221 1257999999975 566666666666654
No 186
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.94 E-value=1e-25 Score=229.06 Aligned_cols=284 Identities=11% Similarity=0.085 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccch-HHHHhhh-CCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAAF-DRDLSWR-TGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~-~~~~~~~-~g~~~~~v~ 164 (477)
..++|+.++++++ ++ ++++|++ |+|+++|+.+++.+++++| .+.+..+.|... ...+... .|.+++.++
T Consensus 80 ~~~~~~~la~~~g------~~-~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~ 151 (398)
T 2fyf_A 80 VGRVRSGLAELFS------LP-DGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIIT 151 (398)
T ss_dssp HHHHHHHHHHHTT------CC-TTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred HHHHHHHHHHHhC------CC-CCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEe
Confidence 3566777777665 22 3578998 9999999999999998887 223333334211 1122221 167777788
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ .++.++.+ + ..++++|++++|+||||.+++.+++.++ +|+++|+||+|+.. . .+ .
T Consensus 152 ~~--~g~~~~~~-----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~--~-~~-~ 208 (398)
T 2fyf_A 152 SD--PGSAPEPQ-----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAG--G-LP-V 208 (398)
T ss_dssp CC--TTCCCCCC-----C------CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTT--T-SC-C
T ss_pred cC--CCCCCCcc-----c------cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccC--C-cc-c
Confidence 76 23443321 1 2378999999999999999997766654 89999999999843 1 11 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----------------------cccCCCc
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----------------------SSFGLVS 301 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----------------------~~~~~vs 301 (477)
.+ . +..+++.|+||.+|.+| ++||++++++.+.. +++. ..+++.+
T Consensus 209 ~~----~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 276 (398)
T 2fyf_A 209 DI----A------ETDAYYFAPQKNFASDG-GLWLAIMSPAALSR-IEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPA 276 (398)
T ss_dssp CG----G------GCSEEEECTTSTTCSCS-SEEEEEECHHHHHH-HHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCC
T ss_pred Cc----c------cCcEEEEecCcccCCCC-ceEEEEECHHHHHH-hhcccccCCCCCcEEehHHHhhhcccCCCCCCCC
Confidence 11 1 12367899999999775 69999996654433 2210 2234455
Q ss_pred hHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhC-CCeEec--C--CceEEEEeeccchhhccCchHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQV-GINCLK--S--NAGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~-gi~~~~--~--~~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
...+.++..+|+.. .+. +++..++++++++++.+.|++. |+++.. + .+++++|++++...+ ..+
T Consensus 277 ~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 347 (398)
T 2fyf_A 277 IATLALLAEQIDWL---VGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD------AGT 347 (398)
T ss_dssp HHHHHHHHHHHHHH---HHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC------HHH
T ss_pred HHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC------HHH
Confidence 66666666666421 222 5677888889999999999988 887763 3 345589999864221 124
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.+.++ ||.+++| +...+++++||+++. .+++++++++++|++++++
T Consensus 348 l~~~L~~~-gI~v~~g--~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 348 VAKILRAN-GIVDTEP--YRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHT-TCBCCSC--CTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CcEEecC--cccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 66666655 9999987 322336799999985 3899999999999998764
No 187
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.94 E-value=6e-25 Score=220.85 Aligned_cols=289 Identities=10% Similarity=0.068 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
..+..++++++|++++ . +++++|+|+++|+.+++.++ .++||.|+++.|+|+++...+... |++++
T Consensus 31 ~~~~~~l~~~la~~~~--------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~ 99 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLG--------V--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPV 99 (375)
T ss_dssp SHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEE
T ss_pred ChHHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCEEE
Confidence 3457899999999996 2 28999999999999999999 899999999999999999888876 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++.+ ..+|+++|++++++ ++++|++++| ||.+.+ +++|.++|+++|+++|+||+|+...+.
T Consensus 100 ~~~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-- 163 (375)
T 2fnu_A 100 FAGIKND--GNIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEY-- 163 (375)
T ss_dssp ECCBCTT--SSBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEE--
T ss_pred EeccCCC--CCCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeE--
Confidence 9998753 27899999887753 7888888876 999988 788899999999999999999743211
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEe-CCHHHHHHHHHhcccC------------------CC
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYS-FNDTVVNCGRKMSSFG------------------LV 300 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~-~~~~i~~~~~~~~~~~------------------~v 300 (477)
.... +. ..+ .+++.||| |.+|. | +|++++ +++.+.+.++.....+ .+
T Consensus 164 ~~~~----~~----~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (375)
T 2fnu_A 164 QNKK----VG----GFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRL 231 (375)
T ss_dssp TTEE----TT----SSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCC
T ss_pred CCee----cc----ccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCC
Confidence 1011 11 112 36778888 99984 6 788877 4465655444432111 12
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+.+...+....+ + .+++..++++++++++.+.|+++ |+.+..+. .++++|+.++... .....+
T Consensus 232 ~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 300 (375)
T 2fnu_A 232 NEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKL 300 (375)
T ss_dssp CHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHH
T ss_pred CHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----cchHHH
Confidence 222222221111 1 24455667778889999999987 77766541 2345577776320 001224
Q ss_pred HHHHHHHhcCeEEeCCCCCCCC---------------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCT---------------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~---------------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.+. +.||.++.+ |.+. ..+++||+++.. ++++++.++++|++++++
T Consensus 301 l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 301 ILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 666654 569999832 2110 126899999753 899999999999999875
No 188
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=2.1e-24 Score=219.19 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=204.1
Q ss_pred cCCCCC--cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 82 FQDYHG--LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 82 Y~~~~G--~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
|.+..| ..++|+++|++++ .++|++|+|+++|+.+++.++ .++||.|+++.|+|+++...+... |+
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~----------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 94 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KA 94 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TC
T ss_pred CccCCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CC
Confidence 555557 8999999999996 268999999999999999999 899999999999999999888876 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATV 237 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~ 237 (477)
+++.++++ .+|.+|+++|++++++. ..++++|++++ |||...+ +++|.++|+++|+++|+||+|+ +..
T Consensus 95 ~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 95 KPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSF 163 (394)
T ss_dssp EEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccce
Confidence 99999987 46889999999988641 11578888885 8997766 8888899999999999999998 444
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC----------------Cc
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL----------------VS 301 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~----------------vs 301 (477)
+.+....+ ..+ +.+.||||..+++|.|+||++++++.+.+.++....++. .+
T Consensus 164 ~~~~~~~~----------~~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 231 (394)
T 1o69_A 164 YKNKALGT----------FGE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLS 231 (394)
T ss_dssp ETTEETTS----------SSS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCC
T ss_pred eCCccccc----------ccC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcC
Confidence 43321111 112 345566433344577999999976666555554433221 11
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceE-EEEeeccchhh-----------
Q 011801 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGL-FFWMDLRHLLK----------- 365 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~-~~~~~l~~~~~----------- 365 (477)
.....++...+ ++ +++..+++++.++++.+.|.+. +++.++. +++ ++++.++....
T Consensus 232 ~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 303 (394)
T 1o69_A 232 NVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINI 303 (394)
T ss_dssp HHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred HHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccc
Confidence 12222221112 22 3445677788888999999887 6555432 233 35676653100
Q ss_pred ---c--cCchHHHHHHHHHHHhcCeEEeCCCCCC---C--CC--------------CCEEEEEeccCCHHHHHHHHHHHH
Q 011801 366 ---E--KTLEGEIALWRTIVNDVKLNVSPGSSFQ---C--TE--------------PGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 366 ---~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~---~--~~--------------~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
. ... ...++.+.+ .+.||.+++|..+. + .. .+..|.+....++++++.+++.|+
T Consensus 304 ~~~~~~~~~-~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~ 381 (394)
T 1o69_A 304 SQKNITLHP-KISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 381 (394)
T ss_dssp CCCCCCCCH-HHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccccccccc-CHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHH
Confidence 0 001 122455555 45699999985331 0 00 122333433359999999999999
Q ss_pred HHHhh
Q 011801 422 AFVQQ 426 (477)
Q Consensus 422 ~~~~~ 426 (477)
++++.
T Consensus 382 ~~~~~ 386 (394)
T 1o69_A 382 KSIKA 386 (394)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 98754
No 189
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.94 E-value=2.2e-24 Score=220.50 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=194.5
Q ss_pred ccCCC--CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 81 IFQDY--HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 81 ~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
.|... ....++++.++++++ .+++++++|+++|+..++.+++++||.|+++.|.|++....+ +.
T Consensus 49 ~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 49 VYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred CcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 45443 347889999999986 248999999999999999999999999999999998765543 33
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |++++.++. |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+
T Consensus 119 ~-g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 119 M-GVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp T-TCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred c-CCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 4 899988874 37888887753 7899999999999999998 8899999999999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC-H--------------------------HH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-D--------------------------TV 287 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~-~--------------------------~i 287 (477)
...+.. .+. ..+.++++.|+||.++.||.|+|++++.+ + .+
T Consensus 181 ~~~~~~---~~~---------~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (412)
T 2cb1_A 181 AAGALC---RPL---------AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCF 248 (412)
T ss_dssp TTTTSC---CGG---------GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred cccccC---Ccc---------ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHH
Confidence 541111 111 12456889999999988999999988655 2 22
Q ss_pred HHHHHHh--cccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cC------------
Q 011801 288 VNCGRKM--SSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KS------------ 350 (477)
Q Consensus 288 ~~~~~~~--~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~------------ 350 (477)
...++.. ..++ ..++...+++...++. +.+..++..+..+.+.+.|.+. ++... .+
T Consensus 249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~ 321 (412)
T 2cb1_A 249 PERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR 321 (412)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence 2222222 1122 1234443433333322 2233344556677788888876 67633 11
Q ss_pred ----CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC-------CCCC-----------------CCCEEE
Q 011801 351 ----NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS-------FQCT-----------------EPGWFR 402 (477)
Q Consensus 351 ----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~-------f~~~-----------------~~~~~R 402 (477)
..+.++.+.+ . +. +....++++.||.+ .|+. .+|. .++.+|
T Consensus 322 ~~~~~~~~iv~~~~-~--~~-------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 390 (412)
T 2cb1_A 322 KYLASGGPILTLDL-G--DL-------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVR 390 (412)
T ss_dssp HHCSSSCSEEEEEC-S--SH-------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEE
T ss_pred HhCCCCceEEEEEe-C--CH-------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEE
Confidence 2344666776 3 11 23455667789999 7742 1120 167999
Q ss_pred EEeccC-CHHHHHHHHHHHH
Q 011801 403 VCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 403 l~~~~~-~~e~l~~~l~~l~ 421 (477)
++++.. ++++++.+++.|+
T Consensus 391 ~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 391 VSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp EECCSSCHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHh
Confidence 999875 5667777666665
No 190
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.93 E-value=5.1e-25 Score=226.57 Aligned_cols=335 Identities=14% Similarity=0.108 Sum_probs=207.1
Q ss_pred CCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. +.+ +.+.+.+.+.+.-+ .+ ....|+. .-..++++.+++++. .
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~------~~-----~~~~~~~-~~~~~l~~~la~~~~---------~ 111 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA------RG-----WLYGAPG-EAEVLLAEKILGYVK---------R 111 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH------TC-----SCCSSCC-HHHHHHHHHHHHHHC---------T
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH------hC-----CCCCCCC-HHHHHHHHHHHHhCC---------C
Confidence 3455679998776 444 34666666655211 00 0112211 112445555555441 3
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhh-------------hCCc------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSW-------------RTGV------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~-------------~~g~------~~~~v~~~~~ 168 (477)
+++|++++|+++|++.+++. +. +++.|++.+|+|+++...+.. ..|+ ++++++.
T Consensus 112 ~~~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~--- 187 (434)
T 2epj_A 112 GGMIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY--- 187 (434)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC---
Confidence 68999999999999999987 54 457888999999876442211 1132 2455553
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|+++|++++++. +.++++ ++++| +||||.+. +.+.+++|.++|+++|++||+||+|.++ ..++. ..
T Consensus 188 ----~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~- 256 (434)
T 2epj_A 188 ----NDVEALERVFAEY---GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-GA- 256 (434)
T ss_dssp ----TCHHHHHHHHHHH---GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-HH-
T ss_pred ----CCHHHHHHHHHhC---CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-hh-
Confidence 2789999988753 125655 55556 46799876 6999999999999999999999999975 32322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----cccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.+... ..++ +.||||.+| +|+|+||++++++ +.+.+... ...+..+++++.++.+.|+..+ +
T Consensus 257 ~~~~~---~~~d----i~s~sK~l~-~G~~~G~v~~~~~-~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~---~- 323 (434)
T 2epj_A 257 QGYFN---IEGD----IIVLGKIIG-GGFPVGAVAGSRE-VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE---E- 323 (434)
T ss_dssp HHHHT---CCCS----EEEEEGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH---H-
T ss_pred hHHhC---CCCC----eeeecchhc-CCcceeeeeecHH-HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH---h-
Confidence 11211 1223 348999999 5999999999654 44433321 1112367778877777765321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccch-h------hccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHL-L------KEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~-~------~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
++..++++++++++.+.|+++ ++....+..|+|+|++++.. . .........++++.++ ++||.+.||
T Consensus 324 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 401 (434)
T 2epj_A 324 -EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPS 401 (434)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSS
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEecc
Confidence 123344555556666666543 55432233457889998741 0 0001112235667666 469999998
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. .++|+++. .+++++++++++|++++++.
T Consensus 402 ~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 402 NL------EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp TT------SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred CC------CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 42 24777754 49999999999999998763
No 191
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.93 E-value=1e-24 Score=226.76 Aligned_cols=350 Identities=10% Similarity=0.032 Sum_probs=214.2
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+..+ .|.++ .+.+.+++.+.- .... .|....+..+.+.++++.+.+..+
T Consensus 51 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~lae~l~~~~~---- 113 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIGYGRDELAEVAARQM-------------RELPYYNTFFKTTHVPAIALAQKLAELAP---- 113 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCSSSSEECHHHHHHHHHHHHHSC----
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----
Confidence 3445678999776 56664 466666655421 1111 122222334556666666655433
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhCCc-----------EEEEEeccC--
Q 011801 109 FDPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRTGV-----------QIVPVHCDI-- 167 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~-- 167 (477)
.+.++|++++|+++|++.+++.+.. +++.|++.+|+|+++...+....|. .+..++.+.
T Consensus 114 ~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~ 193 (472)
T 3hmu_A 114 GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWW 193 (472)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccc
Confidence 3467999999999999999988764 4689999999999876554433221 233344221
Q ss_pred C-CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 S-NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 ~-~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
. +++ .+ +++|++++++.. ..++++|++..++|++|.+. +++.+++|.++|+++|++||+||+|.++.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg 270 (472)
T 3hmu_A 194 AEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFG 270 (472)
T ss_dssp HHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCc
Confidence 0 111 23 677888776421 12456555554466777655 88899999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----cccCCCchHHHHHHHHhcC
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----~~~~~vs~~~q~~~~~~L~ 313 (477)
..+..+ .. +... ..++ + .+|||.+|..|+|+|++++++ .+.+.+... ...+..++++|.++.+.|+
T Consensus 271 r~G~~~-a~-~~~~---v~pd-i---~t~sK~l~gg~~plG~v~~~~-~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~ 340 (472)
T 3hmu_A 271 RTGNWF-GT-QTMG---IRPH-I---MTIAKGLSSGYAPIGGSIVCD-EVAHVIGKDEFNHGYTYSGHPVAAAVALENLR 340 (472)
T ss_dssp TTSSSC-HH-HHHT---CCCS-E---EEECGGGTTTSSCCEEEEEEH-HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH
T ss_pred ccCccc-hh-HHhC---CCCc-e---eeechhhhcCCcceEEEEECH-HHHHhcccCCccccCCCCCCHHHHHHHHHHHH
Confidence 554432 22 2221 1233 2 268999985559999999954 455544311 1123367888888888775
Q ss_pred ChhhHHHHHHHHHHHHH-HHHHHHHHHHhh---CC-CeEecCCceEEEEeeccchhhcc-Cc-----hHHHHHHHHHHHh
Q 011801 314 DDEFVDNFLVETSKRLA-KRHHNFTKGLEQ---VG-INCLKSNAGLFFWMDLRHLLKEK-TL-----EGEIALWRTIVND 382 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~-~r~~~l~~~L~~---~g-i~~~~~~~g~~~~~~l~~~~~~~-~~-----~~e~~l~~~ll~~ 382 (477)
..+- +...++++ ++.+++.+.|++ .+ +....+. |+|+++++....... .+ ....++++.+++
T Consensus 341 ~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 413 (472)
T 3hmu_A 341 ILEE-----ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIV-GMMASIALTPNKASRAKFASEPGTIGYICRERCFA- 413 (472)
T ss_dssp HHHH-----TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEE-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-
T ss_pred HHHH-----hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-CceEEEEEecCccccccccchhHHHHHHHHHHHHH-
Confidence 3210 11223333 444445444443 32 3334443 467778776321111 00 112346666665
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.||.++|+. +++||+... .+++++++++++|++++++.
T Consensus 414 ~Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 414 NNLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999862 689999654 39999999999999998763
No 192
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-24 Score=222.84 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=207.3
Q ss_pred CCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. |.+ +++.+.+.+.+.- +....|. +..++++++++.+.+..+ .
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~---~~~~~~~~l~~~l~~~~~-----~ 107 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETL-------------ERGLTFG---APSPLEVALAKKVKRAYP-----F 107 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------HTCSCCS---SCCHHHHHHHHHHHHHCT-----T
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHH-------------HhCCCCC---CCCHHHHHHHHHHHHhCC-----C
Confidence 3445678998776 555 3466666665531 1111121 234555666666554432 4
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhh-------------CCc------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWR-------------TGV------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~-------------~g~------~~~~v~~~~~ 168 (477)
+++|++++|+++|++.+++. +.+ ++.|++.+|+|+++...+... .|+ +++.++.
T Consensus 108 ~~~v~~~~~g~ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~--- 183 (424)
T 2e7u_A 108 VDLVRFVNSGTEATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY--- 183 (424)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC---
Confidence 78999999999999999885 554 578999999998865432211 132 2444442
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC-cccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNP-LGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NP-tG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|+++|++++++. +.+++ +++++|+|+ ||.+. +.+.+++|.++ ++||++||+||+|.++ ..+.. ..
T Consensus 184 ----~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~--~~ 251 (424)
T 2e7u_A 184 ----NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG--GA 251 (424)
T ss_dssp ----TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT--HH
T ss_pred ----CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh--HH
Confidence 2789999988743 12455 566788765 89765 78999999999 9999999999999976 33322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.+... ..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..+++++.++.+.|+..+ +
T Consensus 252 ~~~~~---~~~d----i~s~sK~l~-~G~~~G~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~- 318 (424)
T 2e7u_A 252 TELLG---LKPD----LVTLGKILG-GGLPAAAYAGRRE-IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE---E- 318 (424)
T ss_dssp HHHHT---CCCS----EEEECGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH---H-
T ss_pred HHHhC---CCcc----hhhhhhhhh-CCcceEEEEEcHH-HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH---h-
Confidence 12211 1223 239999999 6999999999654 4443332 11122367788888777775321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchh-h------ccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLL-K------EKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~-~------~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
.++..++++++++++.+.|++ .++....+..|.|+|++++... . ........++++.++ ++||.+.||
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 397 (424)
T 2e7u_A 319 NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPS 397 (424)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEecc
Confidence 123344555556666666654 3553222234568999987410 0 001112235666666 579999997
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.. ..+|+++. .+++++++++++|++++
T Consensus 398 ~~------~~~~~~~~-~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 398 NF------EAAFLSVA-HREEDVEKTLEALRKAL 424 (424)
T ss_dssp SS------SCEECCTT-CCHHHHHHHHHHHHHHC
T ss_pred CC------CceEeecc-CCHHHHHHHHHHHHHhC
Confidence 52 24777754 59999999999998763
No 193
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.93 E-value=1.2e-24 Score=225.20 Aligned_cols=332 Identities=10% Similarity=0.052 Sum_probs=202.3
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.+. +.+ +++.+.+.+.+.-+ ....| .+..++++++++++.+..+ ++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-------------~~~~~---~~~~~~~~~la~~l~~~~~-----~~ 113 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-------------HGVQY---AASHPLEVRWAERIVAAFP-----SI 113 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-------------TTCSS---CSSCHHHHHHHHHHHHHCT-----TC
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHH-------------hCCCC---CCCCHHHHHHHHHHHhhCC-----CC
Confidence 345678997775 444 44666666655311 11122 2356899999999987642 47
Q ss_pred CcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhhC----------CcE------EEEEeccCCCCcc
Q 011801 112 DRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWRT----------GVQ------IVPVHCDISNNFK 172 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~~----------g~~------~~~v~~~~~~~f~ 172 (477)
++|++|+|+++|++.++++ +.++ +.|++.+|+|+++...+.... |+. ++.++.
T Consensus 114 ~~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 185 (453)
T 2cy8_A 114 RKLRFTGSGTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------- 185 (453)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------
Confidence 8999999999999999987 6654 678888899987654332111 221 222321
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
.|+++|++++++. +.++++ ++++|+ ||||.+. +++++++|.++|++||++||+||+|.++ ..+.. ... +..
T Consensus 186 ~d~~~le~~l~~~---~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~-~~~ 258 (453)
T 2cy8_A 186 DDIEGMREVFANH---GSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-GMQ-ALL 258 (453)
T ss_dssp TCHHHHHHHHHHH---GGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-HHH-HHH
T ss_pred CCHHHHHHHHHhc---CCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-hhh-HHh
Confidence 2789999988753 125665 556664 6799765 7999999999999999999999999976 43322 121 111
Q ss_pred hhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-------hcccCCCchHHHHHHHHhcCC-hhhHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-------MSSFGLVSSQTQYLLASMLSD-DEFVDNFL 322 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-------~~~~~~vs~~~q~~~~~~L~~-~~~~~~~~ 322 (477)
. ..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..+++++.++.+.|+. . .
T Consensus 259 ~---~~~d----i~s~sK~l~-~G~~~G~v~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~----- 323 (453)
T 2cy8_A 259 D---VQPD----LTCLAKASA-GGLPGGILGGRED-VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E----- 323 (453)
T ss_dssp T---CCCS----EEEEEGGGG-TTSSCEEEEECHH-HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-----
T ss_pred C---CCCc----EEEEChhhh-CCcceEEEechHH-HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-----
Confidence 1 1223 238999999 6999999999654 4333322 111223677888777766653 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccc-----h--hhc------cCchHHHHHHHHHHHhcCe
Q 011801 323 VETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRH-----L--LKE------KTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~-----~--~~~------~~~~~e~~l~~~ll~~~gI 385 (477)
++..++++++++++.+.|++ .++....+..|.|+|++++. . ... .......++++.+++ +||
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv 402 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGV 402 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCe
Confidence 11223344444555555543 35433223445789999874 1 000 011122357777765 599
Q ss_pred EEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+.|+ +.+|+++. .+++++++++++|++++++..
T Consensus 403 ~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 403 DIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp ECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99653 23777644 499999999999999987654
No 194
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.93 E-value=1.6e-24 Score=227.29 Aligned_cols=322 Identities=11% Similarity=0.115 Sum_probs=223.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--------PG-----D-AFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--------~G-----d-~vlv~~P~y~~ 147 (477)
|....+..++++++.+++.+..|. +.+++++++|+|+|+|+.+++.++.. +| + .|+++.+.|+.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCC--CCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 443444567788887887777662 22267999999999999999988743 56 6 78999999999
Q ss_pred hHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+...+... |. +++.++++ .++.+|+++|++++++....+.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 202 ~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 202 IKKAGAAL-GFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 98887765 66 88899886 36899999999999876555667899999999999999977 888999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhcccCC----
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMSSFGL---- 299 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~~~~~---- 299 (477)
+++++|++|++..+..+.+......+. ...+++.|++|.++.| .++|++++.++.+ .........+..
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~------~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~ 348 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIE------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDK 348 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCC
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcc------cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcc
Confidence 999999999987654443322111111 2236678999999855 7999999977543 332222222110
Q ss_pred ------------------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEEEE
Q 011801 300 ------------------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLFFW 357 (477)
Q Consensus 300 ------------------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~~~ 357 (477)
...+.++++...+.. ..+++..+++.+.++++.+.|++. |+++.. +..+++++
T Consensus 349 ~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f 423 (504)
T 2okj_A 349 QYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT-----VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF 423 (504)
T ss_dssp SSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEE
T ss_pred cccCcCCcccCCCCCCCCccHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE
Confidence 124555555555532 235666777888889999999986 888764 66777776
Q ss_pred eeccchhhc--cC--c-----hHHHHHHHHHHHhcCe-EEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHh
Q 011801 358 MDLRHLLKE--KT--L-----EGEIALWRTIVNDVKL-NVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 358 ~~l~~~~~~--~~--~-----~~e~~l~~~ll~~~gI-~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~ 425 (477)
...+..... .. . ....++.+.+.++ |+ .+.++ .+. ..++++|+++++ .++++++.++++|+++++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~-~~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 500 (504)
T 2okj_A 424 WYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ-PQG-DKANFFRMVISNPAATQSDIDFLIEEIERLGQ 500 (504)
T ss_dssp EECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEE-EET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEee-EEC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 554432100 00 0 0012456666655 75 44433 222 123689999973 389999999999999876
Q ss_pred h
Q 011801 426 Q 426 (477)
Q Consensus 426 ~ 426 (477)
+
T Consensus 501 ~ 501 (504)
T 2okj_A 501 D 501 (504)
T ss_dssp C
T ss_pred H
Confidence 4
No 195
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=2.5e-25 Score=224.12 Aligned_cols=295 Identities=17% Similarity=0.224 Sum_probs=199.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..++|+++|++++ .+++++++|+++|+..++.++ .++||.|+++.|+|+++...++.. |.++
T Consensus 32 ~~~~~~~~~l~~~la~~~~----------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~~ 100 (373)
T 3frk_A 32 FILGDEDKKFEQEFADYCN----------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYT-GAKP 100 (373)
T ss_dssp CSSSHHHHHHHHHHHHHHT----------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHH-SCEE
T ss_pred ccCCchHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEE
Confidence 5555678999999999997 248999999999999999999 899999999999999999888877 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FS 239 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~ 239 (477)
+.+++++ +++.+|+++|++++++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+... ++
T Consensus 101 ~~~~~~~-~~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~ 167 (373)
T 3frk_A 101 IFVEPDI-RTYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYK 167 (373)
T ss_dssp EEECEET-TTTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET
T ss_pred EEEeccc-cccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEEC
Confidence 9999874 3688999999988754 788777 6789999888 7788889999999999999998421 22
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHhcccCC--------------CchH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--------------VSSQ 303 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~--------------vs~~ 303 (477)
... . ..-..+++.||| |.+|.+| +.|+++++++.+.+.++....++. ++.+
T Consensus 168 ~~~------~------~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 234 (373)
T 3frk_A 168 GMK------V------GSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDEL 234 (373)
T ss_dssp TEE------T------TSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHH
T ss_pred CEe------c------cccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHH
Confidence 211 0 000126778877 9887325 489999987767665554433221 2333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
...+....+.. +++..++.++..+++.+.|.+.++.+.. +..+...|..++-... +..++.+.+. +
T Consensus 235 ~aa~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~ 301 (373)
T 3frk_A 235 QAGFLRVKLKY-------LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDELQKYLN-N 301 (373)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHHHHHHHH-H
Confidence 33332222221 2334455566667788888776633321 1222222221111000 1124555554 5
Q ss_pred cCeEEeCCCC--CCCCC------------C-------CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSS--FQCTE------------P-------GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~--f~~~~------------~-------~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.||.++++.. .++.. + +.+|+++.. +++++++.+++.|+++..+
T Consensus 302 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 302 NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5999987752 11100 1 579999965 4999999999999887654
No 196
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.93 E-value=4.1e-24 Score=219.46 Aligned_cols=342 Identities=12% Similarity=0.054 Sum_probs=199.5
Q ss_pred CCCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+. |.++ .+.+.+.+.+..+. + ....|++ ....++++.+++++.
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~------~-----~~~~~~~-~~~~~la~~l~~~~~--------- 107 (429)
T 4e77_A 49 DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER------G-----LSFGAPT-EMEVKMAQLVTDLVP--------- 107 (429)
T ss_dssp ETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT------C-----SCCSSCC-HHHHHHHHHHHHHST---------
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh------C-----cccCCCC-HHHHHHHHHHHhhCC---------
Confidence 34456789997765 4443 46666666553110 0 0112322 223455555555542
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEE--EEeccCCCCc------------cc
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIV--PVHCDISNNF------------KI 173 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~--~v~~~~~~~f------------~i 173 (477)
.+++|++++|+++|++.+++... .+++.|++.+++|+++...+....+.... ..+.. .++ ..
T Consensus 108 ~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 185 (429)
T 4e77_A 108 TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYN 185 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTT
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCC
Confidence 36899999999999999988542 35678999999998776422111111111 11110 010 01
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
|+++|++++++. +.+++ +++++|+||+|.++ +.+.+++|.++|+++|++||+||+|.++ ..+.. .. .+...
T Consensus 186 d~~~le~~l~~~---~~~~~-~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~-~~-~~~~~ 258 (429)
T 4e77_A 186 DLASVRQAFEQY---PQEVA-CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA-GA-QDYYH 258 (429)
T ss_dssp CHHHHHHHHHHS---TTTEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT-CH-HHHTT
T ss_pred CHHHHHHHHHhc---CCCEE-EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc-hH-HHhcC
Confidence 789999988742 22444 56678877665443 3455999999999999999999999976 33332 11 12211
Q ss_pred hccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcC---ChhhHHHHHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLS---DDEFVDNFLV 323 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~ 323 (477)
..++ +.||||.+| +|+|+||+++++ .+.+.+.. ....+..+++++.++.+.|+ +.++ ++
T Consensus 259 ---~~pd----i~t~sK~~~-~G~~~G~~~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~----~~ 325 (429)
T 4e77_A 259 ---VIPD----LTCLGKIIG-GGMPVGAFGGRR-EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV----YE 325 (429)
T ss_dssp ---CCCS----EEEEEGGGG-TTSCCEEEEECH-HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH----HH
T ss_pred ---CCCC----eeeeccccc-CCCCeEEEEECH-HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH----HH
Confidence 1222 348999999 899999999954 44443332 11222467788887777665 3333 22
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc--------CchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK--------TLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~--------~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.++.....++.|.+.+.+.++....+..|+|+|++++...... ......++++.++++ ||.++|+..
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~--- 401 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF--- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT---
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC---
Confidence 22222222233344444445654444556789999987531000 001123566666655 999998742
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+|+++. .+++++++++++|++++++
T Consensus 402 ---~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 ---EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ---SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred ---CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 34677654 4999999999999999864
No 197
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.93 E-value=2.4e-24 Score=224.92 Aligned_cols=320 Identities=15% Similarity=0.154 Sum_probs=219.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCcc-----CCCcEEEeCChHHHHHHHHHHhcCC---------CC--------e--
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTF-----DPDRIVMGGGATGANELIMFCLANP---------GD--------A-- 137 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~~i~~t~G~t~al~~i~~~l~~~---------Gd--------~-- 137 (477)
|....+..++++++++++.+..|.+..+ ....+++|+|+|+|+..++.++.++ || .
T Consensus 105 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 184 (486)
T 1js3_A 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (486)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEE
Confidence 4444457899999999998887733111 1356899999999999988775321 43 3
Q ss_pred EEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHH
Q 011801 138 FLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLV 217 (477)
Q Consensus 138 vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~ 217 (477)
|+++.++|+.+...++.. |++++.++++ .++.+|+++|++++++..+.+..+.+|++++|+||||.+-+ +++|+
T Consensus 185 v~~s~~~h~s~~~~~~~~-G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~ 258 (486)
T 1js3_A 185 AYASDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVG 258 (486)
T ss_dssp EEEETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred EEECCCCcHHHHHHHHhC-CCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHHH
Confidence 788999999999988887 9999999986 47899999999999875544555668999999999998866 89999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhcc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMSS 296 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~~ 296 (477)
++|+++|+++++|++|++..+..+.+......+. +...++.|++|.++.| +++|++++.++.. .+.+.....
T Consensus 259 ~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~------~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~ 331 (486)
T 1js3_A 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE------FADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPV 331 (486)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG------GCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC----
T ss_pred HHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcc------ccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCch
Confidence 9999999999999999876544333332211111 1124567899999865 8999999977653 222210000
Q ss_pred c---------------------C-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCc
Q 011801 297 F---------------------G-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNA 352 (477)
Q Consensus 297 ~---------------------~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~ 352 (477)
+ + ....+.++++...+.. ..+++..+++.++++++.+.|.+. |+++.. +..
T Consensus 332 yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 406 (486)
T 1js3_A 332 YLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV-----KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL 406 (486)
T ss_dssp --------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred hhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCce
Confidence 0 0 0123455555444422 235666777788889999999887 788764 555
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++| .++.. . ....++.+.+.++ |+.+.++..+. +.+++|+++.+. ++++++.++++|++++++..
T Consensus 407 ~~v~f-~~~~~-~----~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 407 GLVCF-RLKGS-D----GLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp SEEEE-EESSC-H----HHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEE-EecCh-H----HHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55544 44421 0 0112466666655 65433332332 367999998653 78999999999999987643
No 198
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.93 E-value=1.7e-24 Score=217.71 Aligned_cols=290 Identities=16% Similarity=0.230 Sum_probs=201.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.|.+..+..++++++|++++ .+++++++|+++|+..++.++ .++||.|+++.|+|+.+...+... |.+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~----------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG----------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALL-GAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred CccCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 45455678999999999997 247999999999999999999 899999999999999999888877 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
++.+++++ +++.+|+++|++++++ ++++|+ |+||||...+ +++|.++|+++|++||+|++|+. ..+
T Consensus 99 ~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDP-RTYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCT-TTCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCC-ccCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 99999875 3488999999988743 788766 7899998887 78888889999999999999973 223
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhccc--------------CCCch
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--------------GLVSS 302 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--------------~~vs~ 302 (477)
++.... ..+ .+++.|| +|.+|.+|. .|+++++++.+.+.++....+ ..++.
T Consensus 166 ~~~~~~-----------~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 232 (367)
T 3nyt_A 166 KGKRSC-----------NLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDT 232 (367)
T ss_dssp TTEETT-----------SSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCH
T ss_pred CCeecc-----------CCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccH
Confidence 221111 111 4678887 899996576 899999877777666554332 12444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-Cce----EEEEeeccchhhccCchHHHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAG----LFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g----~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
+.+.++...+.. +++..++.++..+++.+.|.+.++.+... .++ .++++.++. ..++.+
T Consensus 233 ~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~ 296 (367)
T 3nyt_A 233 LQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN---------RESVQA 296 (367)
T ss_dssp HHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS---------HHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC---------HHHHHH
Confidence 444444444432 22333444555677778888776554322 111 123333331 113545
Q ss_pred HHHHhcCeEEeCCCCCCC--------CC----------CCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 378 TIVNDVKLNVSPGSSFQC--------TE----------PGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~--------~~----------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
.+ .+.||.++++....+ .. ...+|+++.. +++++++.+++.|++.-
T Consensus 297 ~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 297 SL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNLE 361 (367)
T ss_dssp HH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC--
T ss_pred HH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 44 456999887642110 00 2368998865 59999999999887653
No 199
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=7.6e-24 Score=221.95 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=217.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE---EeCChHHHHHHHHHHhcCC--------CC-----eEEEcCCCc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV---MGGGATGANELIMFCLANP--------GD-----AFLVPSPYY 145 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~---~t~G~t~al~~i~~~l~~~--------Gd-----~vlv~~P~y 145 (477)
|..+.+..++++.+.+++.+..| ++.++++++ +|+|+++|+.+++.++..+ |+ .|+++.++|
T Consensus 87 ~~~~p~~~~le~~~~~~la~l~g--~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h 164 (502)
T 3hbx_A 87 MDEYPVTTELQNRCVNMIAHLFN--APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQ 164 (502)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCC
T ss_pred hhcChhHHHHHHHHHHHHHHHhC--CCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCch
Confidence 33444567888888888887776 222255544 4999999999998887655 76 899999999
Q ss_pred cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--
Q 011801 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK-- 223 (477)
Q Consensus 146 ~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~-- 223 (477)
..+...++.. |++++.+++++ ++|.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 165 ~s~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~ 233 (502)
T 3hbx_A 165 VCWEKFARYF-EVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNK 233 (502)
T ss_dssp HHHHHHHHHT-TCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhh
Confidence 9999888877 99999999874 4589999999998864 7889999999999999988 77788888888
Q ss_pred ----CeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-HHHHHhcc
Q 011801 224 ----NIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-NCGRKMSS 296 (477)
Q Consensus 224 ----~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-~~~~~~~~ 296 (477)
|+++++|++|++++. ..+...-. +. ..+...+..|.+|.++ ++.++|+++..++... ........
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~~----~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~ 305 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWD---FR----LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHIN 305 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCS---TT----STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEC
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccc---cC----CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcc
Confidence 999999999986531 11111100 00 1244567789999775 7788999988665432 21111111
Q ss_pred c-----------CC---CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecC-CceEEEEeec
Q 011801 297 F-----------GL---VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKS-NAGLFFWMDL 360 (477)
Q Consensus 297 ~-----------~~---vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~-~~g~~~~~~l 360 (477)
+ +. .....++++...+.... +.+..++..+..+++.+.|++.+ +++..+ ....++.+++
T Consensus 306 yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (502)
T 3hbx_A 306 YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEG-----YRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSL 380 (502)
T ss_dssp SSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEE
T ss_pred cccCCCCCccccCCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEe
Confidence 1 00 12344444444443332 35566677777889999999985 887765 3445677777
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+... ... ..++.+.| .+.||.+....... ..+..++||+++.. ++++++.+++.|++++++.+.
T Consensus 381 ~~~~---~~~-~~~l~~~L-~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 381 KDSS---CHT-EFEISDML-RRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp SSCS---SCC-HHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC---cCC-HHHHHHHH-HhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6421 111 11455555 45699875432211 12346899999764 899999999999999976554
No 200
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.93 E-value=1.4e-23 Score=220.27 Aligned_cols=325 Identities=11% Similarity=0.092 Sum_probs=225.2
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--------------CCCeEEEcCCCc
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--------------PGDAFLVPSPYY 145 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--------------~Gd~vlv~~P~y 145 (477)
..|....+..++++++++|+.+..|. +.+++.+++|+|+|+|+..++.++.+ +++.|+++.++|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~--~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCC--CCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 34666667889999999999988773 23357899999999999988877654 577899999999
Q ss_pred cchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 146 AAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 146 ~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
..+...++.. |. +++.++++. ++.+|+++|++++++....+.++++|++++|+||||.+-+ +++|+++|++
T Consensus 203 ~s~~~~~~~~-g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAAL-GFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEK 276 (511)
T ss_dssp THHHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHH
Confidence 9999888876 87 889998863 5899999999999876666666899999999999999966 8999999999
Q ss_pred cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH-HHHhcccCC--
Q 011801 223 KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC-GRKMSSFGL-- 299 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~-~~~~~~~~~-- 299 (477)
+|+++++|++|++..+..+.+......+. ....++.+++|.++.| ..+|+++..++..... ......+..
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~~~~g~~------~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~ 349 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIE------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQ 349 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCS
T ss_pred cCCEEEEEccchhhHhhChhhhhhccCCc------cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCc
Confidence 99999999999876554333222111111 2235678999999855 7789998877654332 221111110
Q ss_pred --------------------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEE
Q 011801 300 --------------------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLF 355 (477)
Q Consensus 300 --------------------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~ 355 (477)
...+..+++...+. ...+++..+++.+..+++.+.|++. |+++.. +..+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v 424 (511)
T 3vp6_A 350 DKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 424 (511)
T ss_dssp SCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCE
T ss_pred ccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEE
Confidence 11233333333332 3346777788888889999999887 888765 555555
Q ss_pred EEeeccchhhccC--ch-------HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKT--LE-------GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~--~~-------~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~ 424 (477)
+|.-.|...+... .. ...++.+.+.++ |+.+.. ..+...+.+++|+++++ .++++++.+++.|+++-
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5543343332110 00 012466666665 654332 11112234589999954 38999999999999876
Q ss_pred hh
Q 011801 425 QQ 426 (477)
Q Consensus 425 ~~ 426 (477)
+.
T Consensus 503 ~~ 504 (511)
T 3vp6_A 503 QD 504 (511)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 201
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=1.7e-23 Score=211.54 Aligned_cols=282 Identities=11% Similarity=0.101 Sum_probs=197.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCC--cEEEEEeccCC------CCc-ccCHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTG--VQIVPVHCDIS------NNF-KITREALEA 180 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g--~~~~~v~~~~~------~~f-~i~~~~l~~ 180 (477)
+.|++|+|+|+|+++++..+ .+||+|+++++.|.+.. ..++.. | .+++.++.+.. ..| .+|++++++
T Consensus 52 ~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~ 129 (379)
T 3ke3_A 52 AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKG-KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVA 129 (379)
T ss_dssp EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHH-CCSSEEEEEECEESSCCSSCCCEECCCHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHh-CCCCceEEEeccccccccccCCCCCCCHHHHHH
Confidence 67999999999999988655 69999999999987643 233433 5 47777776431 112 479999999
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcE
Q 011801 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~v 260 (477)
++++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ . ..+ ..+... +..
T Consensus 130 ~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~~~-~~~~~~--------~~d 191 (379)
T 3ke3_A 130 KIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---CVW-LDMKEL--------GID 191 (379)
T ss_dssp HHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---TCC-CCHHHH--------TCS
T ss_pred HHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---Ccc-cccccc--------CCC
Confidence 99643 68899999999999999999999999999999999999999986 2 222 232221 334
Q ss_pred EEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcc---------------------c-CCCchHHHHHHHHhcCChh
Q 011801 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSS---------------------F-GLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 261 iiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~---------------------~-~~vs~~~q~~~~~~L~~~~ 316 (477)
+++.|++|.++ .+.++|+++++++.+.. +.. ..+ + ++.+...+.++.+.|.-
T Consensus 192 ~~~~s~~K~l~-~~~g~g~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~-- 267 (379)
T 3ke3_A 192 VLISAPQKGWS-STPCAGLVMLSAAAIKK-VESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILE-- 267 (379)
T ss_dssp EEEECTTTTTC-SCCCEEEEEECHHHHHH-HHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHH--
T ss_pred EEEecchhhcC-CCCceEEEEECHHHHHh-hhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH--
Confidence 77889999987 44569999996654433 321 111 1 13455555555555532
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC
Q 011801 317 FVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 317 ~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
+.+. +++..++++++.+++.+.|+++|+++..+. .+....+..+.. +..+. ..+.++||.+.+|..
T Consensus 268 -~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~~L~~~Gi~v~~g~~ 337 (379)
T 3ke3_A 268 -AKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--------DMHKG-SAFAEAGLQIAAGVP 337 (379)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--------HHHSS-HHHHHTTCCCEECCC
T ss_pred -HHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--------chHHH-HHHHHCCeEEeCCcc
Confidence 1222 466777888888999999999998776543 222233333311 11122 334567999999987
Q ss_pred CCCC---CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 393 FQCT---EPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 393 f~~~---~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+. ..+.+|+++... +++++++++++|++++++.
T Consensus 338 ~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 338 LKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp CSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 6542 257999999653 8999999999999998764
No 202
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.92 E-value=1.4e-23 Score=216.23 Aligned_cols=294 Identities=15% Similarity=0.160 Sum_probs=199.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---------cCCCCeEEEcCCCccchHHHH
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---------ANPGDAFLVPSPYYAAFDRDL 152 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---------~~~Gd~vlv~~P~y~~~~~~~ 152 (477)
|.+..+..++|+++|++++. +++++++++++|+.+++.++ .++||.|+++.|+|+.+...+
T Consensus 58 ~~~~~~~~~l~~~la~~~g~----------~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~ 127 (437)
T 3bb8_A 58 LTTGRFNDAFEKKLGEYLGV----------PYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPT 127 (437)
T ss_dssp CBSCHHHHHHHHHHHHHHTC----------SEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHCC----------CcEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHH
Confidence 44445789999999999971 26788888889999999998 789999999999999999888
Q ss_pred hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 153 SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN-PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
... |++++.++++. ++|.+|+++|++++++ ++++|++++ |+|| .+ +++|.++|+++|+++|+||
T Consensus 128 ~~~-g~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~~~g~~----~~---~~~i~~l~~~~~~~li~D~ 192 (437)
T 3bb8_A 128 IQN-GLIPVFVDVDI-PTYNVNASLIEAAVSD------KTKAIMIAHTLGNL----FD---LAEVRRVADKYNLWLIEDC 192 (437)
T ss_dssp HHT-TCEEEECCEET-TTTEECGGGHHHHCCT------TEEEEEEECGGGCC----CC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHc-CCEEEEEeccC-ccCCcCHHHHHHhcCC------CCeEEEEeCCCCCh----hc---HHHHHHHHHHcCCEEEEEC
Confidence 876 99999998874 3688999999988753 789999984 4454 44 8889999999999999999
Q ss_pred cccc-cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC------------
Q 011801 232 IYAA-TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG------------ 298 (477)
Q Consensus 232 ~y~~-~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~------------ 298 (477)
+|+. ..++. .. . .. ..+ +++.||+|..+++|.|+|+++++++.+....+....++
T Consensus 193 a~~~g~~~~~---~~---~-~~---~~d--~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (437)
T 3bb8_A 193 CDALGSTYDG---KM---A-GT---FGD--IGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNT 260 (437)
T ss_dssp TTCTTCEETT---EE---T-TS---SSS--EEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTBCC---------
T ss_pred ccccCceECC---ee---c-cc---ccC--EEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccc
Confidence 9983 22211 11 1 00 122 66789998888899999999998776665443321111
Q ss_pred -----------------------------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe
Q 011801 299 -----------------------------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL 348 (477)
Q Consensus 299 -----------------------------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~ 348 (477)
.++.+.+.++...|.+ +.+..++.++..+++.+.|++. |+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 333 (437)
T 3bb8_A 261 CKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLER-------IEEFVEKRKANFKYLKDALQSCADFIEL 333 (437)
T ss_dssp -------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHGGGGTTTEEC
T ss_pred cccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 0123333333333322 1222233355667788888887 66554
Q ss_pred cCC-----ce--EEE-EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-C---------------------C
Q 011801 349 KSN-----AG--LFF-WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-E---------------------P 398 (477)
Q Consensus 349 ~~~-----~g--~~~-~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~---------------------~ 398 (477)
+.. .+ .|+ .++.+...+ . .++.+.|. +.||.++++....+. . .
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~l~~~L~-~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 406 (437)
T 3bb8_A 334 PEATENSDPSWFGFPITLKEDSGVS-----R-IDLVKFLD-EAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMN 406 (437)
T ss_dssp CCCCTTEECCCSSEEEEECGGGSSC-----H-HHHHHHHH-HTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHH
T ss_pred CCCCCCCceeeEEEEEEECCcCcCc-----H-HHHHHHHH-HCCCceeccCCcccccCchhhccCccccCCCcHHHHHhc
Confidence 311 02 233 354431111 1 14555554 569999988652110 0 1
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+++.. +++++++.+++.|+++++.
T Consensus 407 ~~lrl~~~~~~t~~di~~i~~~l~~~~~~ 435 (437)
T 3bb8_A 407 QTFWIGIYPGLTHDHLDYVVSKFEEFFGL 435 (437)
T ss_dssp HEEEECCSTTCCHHHHHHHHHHHHHHTTT
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHcc
Confidence 249999866 4999999999999998764
No 203
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.92 E-value=2.8e-24 Score=222.26 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=192.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---C----------C-CCeEEEcCCCccchHHHHh
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---N----------P-GDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~----------~-Gd~vlv~~P~y~~~~~~~~ 153 (477)
..++++.++++++. .++++|++|+|+++|++.++..+. . + ||.|++.+|+|+++.....
T Consensus 103 ~~~la~~la~~~~~-------~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 103 MARFVETFARVLGD-------PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp HHHHHHHHHHHHCC-------TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred HHHHHHHHHHhcCC-------CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 35666666666631 357899999999999999987542 2 2 8999999999988654322
Q ss_pred hhCC--------c-----EEEEEeccCCCCc--------ccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcc-cCCCH
Q 011801 154 WRTG--------V-----QIVPVHCDISNNF--------KITREALEAAYERAQEASINIKGLIITNP-SNPLG-TTLDR 210 (477)
Q Consensus 154 ~~~g--------~-----~~~~v~~~~~~~f--------~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG-~~~~~ 210 (477)
..+| . +++.++.+..+.. ..++++|++++++. +.++++|+ ++| +||+| .+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi-~ep~~~~~G~~~~~~ 251 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFV-AEPIQGEGGDRHFRP 251 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEE-ECSEETTTTCEECCH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEE-EeCcCCCCCCccCCH
Confidence 2212 1 4455554320011 24556677777531 23677655 556 68999 58999
Q ss_pred HHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-
Q 011801 211 DTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN- 289 (477)
Q Consensus 211 ~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~- 289 (477)
+++++|.++|++||+++|+||+|.++.+.+.. ..... .. ..++ +.||||.+ |+||++++++.+..
T Consensus 252 ~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~-~~---~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l 317 (449)
T 2cjg_A 252 EFFAAMRELCDEFDALLIFDEVQTGCGLTGTA-WAYQQ-LD---VAPD----IVAFGKKT-----QVCGVMAGRRVDEVA 317 (449)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-STHHH-HT---CCCS----EEEECGGG-----SSEEEEECGGGGGST
T ss_pred HHHHHHHHHHHHCCcEEEEeccccCCCccCcc-eeecc-cC---CCce----EEEecCcc-----cEEEEEECHHHhhhh
Confidence 99999999999999999999999986555542 22221 11 1222 23789988 79999996643321
Q ss_pred ---HHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----C--CeEecCCceEEEEe
Q 011801 290 ---CGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----G--INCLKSNAGLFFWM 358 (477)
Q Consensus 290 ---~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----g--i~~~~~~~g~~~~~ 358 (477)
.... .......++++|.++.+.|+..+ + ++..++++++++++.+.|+++ . +....+. |.|+++
T Consensus 318 ~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~-g~~~~~ 391 (449)
T 2cjg_A 318 DNVFAVPSRLNSTWGGNLTDMVRARRILEVIE---A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGR-GLMCAF 391 (449)
T ss_dssp TCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHH---H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEE-TTEEEE
T ss_pred hhcccCCcccccCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeec-cEEEEE
Confidence 1111 11222367788888877775311 1 123345555666666666543 2 4444444 457788
Q ss_pred eccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 359 DLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 359 ~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++... ...++++.+++ .||.+.|+. ++++|++++. .+++++++++++|++++++
T Consensus 392 ~~~~~~------~~~~~~~~l~~-~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 392 SLPTTA------DRDELIRQLWQ-RAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp ECSSHH------HHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECChH------HHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 887421 12357777775 699999872 5789998765 4999999999999999865
No 204
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.92 E-value=8.5e-24 Score=219.04 Aligned_cols=302 Identities=11% Similarity=0.078 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChH-HHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT-GANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t-~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..++.+++.+++.+..| .+++ +++|+|+| .++.+++.++.. +|+.|+++.+.|+.+...++.. |++++.++
T Consensus 131 ~~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~-G~~~~~v~ 204 (456)
T 2z67_A 131 MYALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHc-CCCceEEE
Confidence 44555556666655554 4455 99999999 566655555433 6788999999999998888876 99999888
Q ss_pred ccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 165 CDI-SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 165 ~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. ++++.+|+++|++++++... ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+...++ +
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g---~ 277 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY---Y 277 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---H
T ss_pred EeccCCCCCcCHHHHHHHHHHHhh-CCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH---h
Confidence 632 35689999999999942111 126778889999999999988 888889999999999999999854321 1
Q ss_pred ccH-HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-Cc-hHHHHHHHHhcCChhhHHH
Q 011801 244 TSV-AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL-VS-SQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~-~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~-vs-~~~q~~~~~~L~~~~~~~~ 320 (477)
.+. ..... . ...+++.|++|.++ .+.++||+++.++.+...+......+. .+ .+.+.++...+. ..
T Consensus 278 ~~~~~~~~~----~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~ 346 (456)
T 2z67_A 278 LEKLKKAFK----Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SK 346 (456)
T ss_dssp HHHHHHHHT----S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HH
T ss_pred hHHHHHhhC----C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HH
Confidence 111 11111 1 22357789999765 678999999966555444432211111 11 334444444442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeec--cchhhccCchHHHHHHHHHHHhcCe---EEe---
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDL--RHLLKEKTLEGEIALWRTIVNDVKL---NVS--- 388 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l--~~~~~~~~~~~e~~l~~~ll~~~gI---~v~--- 388 (477)
.+++..+++.+.++++.+.|++. |+.+.++. .++++++ +.. ..++...|.++ || .+.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~--------~~~l~~~L~~~-gi~~~rv~~~~ 415 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD--------PVEIAAKLYNL-RVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC--------HHHHHHHHHHT-TEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH--------HHHHHHHHHHc-CCCcceEEeec
Confidence 35667778888889999999887 87777666 4566666 321 11455555544 64 454
Q ss_pred ---CCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 389 ---PGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 389 ---pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
+|..|.....+++|++++. .+++++++++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2444444345799999984 49999999999998754
No 205
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.92 E-value=8.4e-24 Score=216.92 Aligned_cols=281 Identities=17% Similarity=0.180 Sum_probs=188.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~ 162 (477)
...+|++.+|++++ .+..++++++++|+.+++.+++++||.|++++|+|+++.. .++.. |++++.
T Consensus 83 ~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~~~~ 151 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG----------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEE
Confidence 46788899998886 2345666667899999999999999999999999998876 44555 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+.
T Consensus 152 v~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~--- 212 (430)
T 3ri6_A 152 VDVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL--- 212 (430)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC---
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence 8864 78999888754 7999999999999999998 778899999999999999999843221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe--CCHHH------------------HHHHH--HhcccCC-
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS--FNDTV------------------VNCGR--KMSSFGL- 299 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~--~~~~i------------------~~~~~--~~~~~~~- 299 (477)
.+ . ..+..+++.|+||.+|-+|..+|.++. .+... ....+ ....++.
T Consensus 213 -~~-~--------~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~ 282 (430)
T 3ri6_A 213 -EA-K--------RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS 282 (430)
T ss_dssp -CG-G--------GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred -Ch-H--------HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC
Confidence 11 1 123457899999999867665555544 22111 11111 1122222
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCC----------------ceEEEEeecc
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSN----------------AGLFFWMDLR 361 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~----------------~g~~~~~~l~ 361 (477)
.+++..+++...+ +.+..+.++..++...+.+.|++. +++ +..|. +|+.+|+.++
T Consensus 283 ~~~~~a~l~l~~l-------~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 283 LSPHNAYLQSLGL-------ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE 355 (430)
T ss_dssp CCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred CCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC
Confidence 3443333332222 123444556667778888888876 554 33332 5558999998
Q ss_pred chhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 362 ~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
... ....+... ++-.++.+++|..+.. ..++++||+++. |+.+.+++.|
T Consensus 356 ~~~------~~~~~~~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~dl 425 (430)
T 3ri6_A 356 SKE------ASYRFMDA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKEDI 425 (430)
T ss_dssp SHH------HHHHHHHH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHHH
T ss_pred CHH------HHHHHHHh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHH
Confidence 321 11123222 2234566777876651 236799999985 4556667777
Q ss_pred HHHH
Q 011801 421 AAFV 424 (477)
Q Consensus 421 ~~~~ 424 (477)
++++
T Consensus 426 ~~al 429 (430)
T 3ri6_A 426 LQAL 429 (430)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6655
No 206
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.92 E-value=5.6e-25 Score=227.23 Aligned_cols=287 Identities=13% Similarity=0.050 Sum_probs=187.5
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 84 ~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
+.....++++.+|+ ++ .+ +++++|+|+++|+.+++.+++++||.|+++.|+|..+...+... |++++.+
T Consensus 55 ~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDIS-QQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHH-TCCEEEC
T ss_pred cchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHc-CCeEEEE
Confidence 34456788888888 75 23 68999999999999999999999999999999999999888877 9999888
Q ss_pred eccCCCC----cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 164 HCDISNN----FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 164 ~~~~~~~----f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
+...+.+ +.+|+++| +. .++++|++++ +|++|.+.+ +++|+++|+++|+++|+||+|++ +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cC------CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 8732223 56788877 21 2789999999 566999999 78899999999999999999986 224
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-HHHHH-hc--ccCCCchHHHHHHHHhcCC
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-NCGRK-MS--SFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-~~~~~-~~--~~~~vs~~~q~~~~~~L~~ 314 (477)
.+. ..+.... +..+++.|+||.++ ++.++||++++++.+. ..... .. ..++.+.....++...+
T Consensus 191 ~~~-~~~~~~~--------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~-- 258 (446)
T 2x3l_A 191 QGF-PDSTLNY--------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAA-- 258 (446)
T ss_dssp TTS-CCCGGGG--------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHH--
T ss_pred CCC-CCChHHc--------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHH--
Confidence 433 2232221 12378899999664 4445899999765432 11111 11 11223322222222222
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe-CCCC
Q 011801 315 DEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS-PGSS 392 (477)
Q Consensus 315 ~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~-pg~~ 392 (477)
++++.. .++..++..+..+.+.+. |+++..+..+.++|++++. .. ..++.+.+.++ ||.+. +|
T Consensus 259 -~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~-~~------~~~l~~~L~~~-GI~v~~~g-- 323 (446)
T 2x3l_A 259 -QFYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEG-FT------GHDIQNWFMNA-HIYLELAD-- 323 (446)
T ss_dssp -HHHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTT-SC------HHHHHHHHHHT-TEEESEEC--
T ss_pred -HHHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCC-cC------HHHHHHHHHHC-CCEEEecC--
Confidence 111110 011222233333333333 7888766555689998872 11 12455666555 99997 54
Q ss_pred CCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 393 FQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 393 f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++|++++.. +++++ +++++|++++++.
T Consensus 324 -----~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 -----DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -----SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -----CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35799999863 78889 9999999998764
No 207
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.91 E-value=7.9e-23 Score=214.99 Aligned_cols=321 Identities=14% Similarity=0.149 Sum_probs=214.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-------C-CCC------eEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------N-PGD------AFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-------~-~Gd------~vlv~~P~y~~ 147 (477)
|....+..++.+++.+++.+..| .+++++++|+|+|+|+..++.++. + +|| .|+++.+.|+.
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 43334555677776666666655 447899999999999998887763 2 576 89999999998
Q ss_pred hHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+...++.. |. +++.++++. ++.+|+++|++++++...++.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 216 ~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 216 IQKGAAFL-GLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp HHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence 88887766 77 899999863 6789999999999876555667899999999999999988 888999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--HHHHHHHHhccc-----
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--TVVNCGRKMSSF----- 297 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--~i~~~~~~~~~~----- 297 (477)
+++++|++|++..+..+.+......+ .+..+++.|++|.++ .+.++|++++.++ .+.........+
T Consensus 290 ~~l~vD~a~~~~~~~~~~~~~~~~g~------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~ 362 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQTHRHLLDGI------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQD 362 (515)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTG------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------
T ss_pred CeEEEehhhhhHHHhChhhHhhcCCC------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCc
Confidence 99999999998765444332211111 123467889999997 4468999999776 333321111110
Q ss_pred ---------CC--------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCceEEEEe
Q 011801 298 ---------GL--------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAGLFFWM 358 (477)
Q Consensus 298 ---------~~--------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g~~~~~ 358 (477)
+. ...+.++++...+.. ..+++..++..+..+++.+.|++. |+++.. +..+.+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 437 (515)
T 2jis_A 363 KFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGD-----QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFW 437 (515)
T ss_dssp CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEE
T ss_pred ccccccCCCCCCCCCCCCcccHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEE
Confidence 00 113444444444432 235566777888889999999987 887764 344555554
Q ss_pred eccchhhc----cCchHHH-----HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-c-CCHHHHHHHHHHHHHHHhh
Q 011801 359 DLRHLLKE----KTLEGEI-----ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-N-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 359 ~l~~~~~~----~~~~~e~-----~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..+..... ..+.... .+.+.+.++ |+........ ...++++|++++ . .++++++.++++|++++++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 44432211 1111111 134445444 7543211000 112468999994 3 3899999999999988754
No 208
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.91 E-value=2.3e-23 Score=218.07 Aligned_cols=316 Identities=11% Similarity=0.135 Sum_probs=212.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHh----c---------CC------CC-eEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCL----A---------NP------GD-AFLV 140 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l----~---------~~------Gd-~vlv 140 (477)
|....+..++++++.+++.+..| +++ +.+++|+|+|+|+..++.++ . .+ |+ .|++
T Consensus 132 ~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~ 207 (497)
T 2qma_A 132 WDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC 207 (497)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred hhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence 43334567888887777777766 333 78999999999999988873 2 12 46 7999
Q ss_pred cCCCccchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHH
Q 011801 141 PSPYYAAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLV 217 (477)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~ 217 (477)
+.+.|..+...+... |. +++.++++ .++.+|+++|++++++....+.++.+|++++|+||||.+.+ +++|.
T Consensus 208 s~~~h~s~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~ 281 (497)
T 2qma_A 208 SKKSHFTVQKSASWM-GLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIA 281 (497)
T ss_dssp ETTSCTHHHHHHHHT-TSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred CCCchHHHHHHHHHc-CCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHH
Confidence 999998888877765 65 78889886 36889999999999864443334558899999999999877 88899
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF 297 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~ 297 (477)
++|+++|+++++|++|++..+..+ +......++ ...+++.|++|.++.| .++|+++..++.....+.....+
T Consensus 282 ~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~------~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~y 353 (497)
T 2qma_A 282 DMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE------RAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADY 353 (497)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG------GCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC----
T ss_pred HHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc------cCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchh
Confidence 999999999999999997654333 221111111 2236678999999855 79999998766532221111111
Q ss_pred CC------C-------------chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCceEEE
Q 011801 298 GL------V-------------SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNAGLFF 356 (477)
Q Consensus 298 ~~------v-------------s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~g~~~ 356 (477)
.. . ..+.++++...+.. ..+++..+++.+.++++.+.|++. ++++. ++..+ ++
T Consensus 354 l~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v 427 (497)
T 2qma_A 354 LNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP-----KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS-TV 427 (497)
T ss_dssp ----------------CCSCCCTHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS-EE
T ss_pred cCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce-EE
Confidence 00 0 12233334444432 234566677788889999999986 78775 45554 66
Q ss_pred EeeccchhhccCchH-HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEG-EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~-e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
++++.... ..... ..++.+.+. +.|+.+.++..+. +.+++|+++.+ .+++++++++++|++++++
T Consensus 428 ~f~~~~~~--~~~~~l~~~l~~~l~-~~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 428 LFRATHET--ADLDELNKALRLEAL-TRGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEEECCSS--SCHHHHHHHHHHHHH-HHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCc--cCHHHHHHHHHHHHH-hCCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 66665321 01110 123445555 4598886654432 35689999842 3899999999999998765
No 209
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=1.5e-22 Score=205.96 Aligned_cols=281 Identities=16% Similarity=0.157 Sum_probs=189.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH-----hhhCCcEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL-----SWRTGVQIVP 162 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~-----~~~~g~~~~~ 162 (477)
..+|++.+|++.+ .++.++++++++|+.+ +..++++||.|+++.|+|++....+ +.. |++++.
T Consensus 69 ~~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~-g~~~~~ 136 (400)
T 3nmy_A 69 RFAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTA-GLDFSF 136 (400)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHH-CCEEEE
T ss_pred HHHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhc-CeEEEE
Confidence 5678888888875 2367777777999998 4678899999999999998655443 334 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+..+
T Consensus 137 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~- 199 (400)
T 3nmy_A 137 VDLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP- 199 (400)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG-
T ss_pred ECCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh-
Confidence 8864 68899888754 7899999999999999998 88899999999999999999974333211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEE--EEeCCHHHHHHHHHhc-cc-CCCchHHHHHHHHhcCChhhH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGI--VYSFNDTVVNCGRKMS-SF-GLVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~--i~~~~~~i~~~~~~~~-~~-~~vs~~~q~~~~~~L~~~~~~ 318 (477)
. ..+..+++.|+||.+|-+|.++|. ++..++.+.+.++... .+ ...++...+++...++.
T Consensus 200 -~-----------~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~---- 263 (400)
T 3nmy_A 200 -L-----------SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT---- 263 (400)
T ss_dssp -G-----------GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT----
T ss_pred -h-----------hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH----
Confidence 1 113458899999999988888765 5665666655554332 22 23566666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-CCe-Eec----------------CCceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLK----------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+....++..++.+.+.+.|++. .+. +.. ...|.+++++++.... ....+... +
T Consensus 264 ---l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~-----~~~~~~~~-l 334 (400)
T 3nmy_A 264 ---LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFD-----AAKRFCEK-T 334 (400)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHH-----HHHHHHHH-C
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHH-----HHHHHHHc-C
Confidence 2333455566777788888776 332 221 2246788999874211 11122222 2
Q ss_pred HhcCeEEeCCCCCC----------C-----------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 381 NDVKLNVSPGSSFQ----------C-----------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 381 ~~~gI~v~pg~~f~----------~-----------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+-.++.++.|..+. . ..++.+|++++. |+.+.+++.|+++++
T Consensus 335 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 335 ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 22234445554332 1 135799999995 445566777777775
No 210
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.91 E-value=7.8e-23 Score=208.91 Aligned_cols=208 Identities=15% Similarity=0.108 Sum_probs=150.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
..++++.+|++++ .+++++++|+++|+.+++.+++++||.|+++.|.|++....+ +.. |+++..+
T Consensus 84 ~~~le~~lA~l~g----------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~-G~~v~~v 152 (415)
T 2fq6_A 84 HFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWF 152 (415)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEEE
Confidence 5679999999886 245777888999999999999999999999999998876543 344 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccccccccCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y~~~~~~~~ 241 (477)
+.+ |+++|++++++ ++|+|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+..++. .
T Consensus 153 ~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~-~ 215 (415)
T 2fq6_A 153 DPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF-K 215 (415)
T ss_dssp CTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS-C
T ss_pred CCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC-C
Confidence 753 67888888754 7899999999999999998 7889999999 99999999999853221 1
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCHHHHHHHHHh-cccCC-CchHHHHHHHHhcCChhhH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFNDTVVNCGRKM-SSFGL-VSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~~i~~~~~~~-~~~~~-vs~~~q~~~~~~L~~~~~~ 318 (477)
++ . .+..+++.|+||.+|.+|.+ +||++++++.+ +.++.. ..++. .++...+++...++
T Consensus 216 ---p~-~--------~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~-~~l~~~~~~~G~~~~~~~a~~~~~~l~----- 277 (415)
T 2fq6_A 216 ---AL-D--------FGIDVSIQAATKYLVGHSDAMIGTAVCNARCW-EQLRENAYLMGQMVDADTAYITSRGLR----- 277 (415)
T ss_dssp ---GG-G--------GTCSEEEEETTTTTTCSSSCCCEEEEECTTTH-HHHHHHHHHTTCCCCHHHHHHHHHHHH-----
T ss_pred ---cc-c--------cCCeEEEEeCccccCCCCCceEEEEEeCHHHH-HHHHHHHHhcCCCCCHHHHHHHHhhhh-----
Confidence 11 1 13457899999999988765 69999876543 333322 22332 34443443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+....++..++.+.+.+.|++.
T Consensus 278 --~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 278 --TLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 13334445566667777777765
No 211
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=211.94 Aligned_cols=321 Identities=13% Similarity=0.077 Sum_probs=227.0
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCcc------CCCcEEEeCChHHHHHHHHHHhcC-------------------C
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTF------DPDRIVMGGGATGANELIMFCLAN-------------------P 134 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~~i~~t~G~t~al~~i~~~l~~-------------------~ 134 (477)
..|....+..++++++++|+.+..|.+..+ .....++|+|+|+++..++.+..+ +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 356666788999999999999987743211 013689999999999988876532 5
Q ss_pred CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHH
Q 011801 135 GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLK 214 (477)
Q Consensus 135 Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~ 214 (477)
++.|+++.++|..+...+... |.+++.++++ .++.+|+++|++++++....+..+.+|+++.++|+||.+-+ ++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~-g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLIS-LVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HH
T ss_pred CeEEEEcCcchHHHHHHHHhC-CCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HH
Confidence 779999999999999888876 9999999986 46899999999999876655656888899999999999866 88
Q ss_pred HHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HHHH
Q 011801 215 SLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CGRK 293 (477)
Q Consensus 215 ~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~~~ 293 (477)
+|+++|++||+++++|++|++..+..+.+......++ ....+..+++|.++.| ..+|+++..++.... ....
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~------~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~ 334 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE------YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSV 334 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG------GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCC
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc------cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcC
Confidence 9999999999999999999875443333222211111 1134567999999855 568888887765432 1111
Q ss_pred hcccC------------------C--CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc
Q 011801 294 MSSFG------------------L--VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA 352 (477)
Q Consensus 294 ~~~~~------------------~--vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~ 352 (477)
...|. . ...+.++++...+.. ..+++..++..++.+++.+.|++. |+++..+..
T Consensus 335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~ 409 (481)
T 4e1o_A 335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGV-----KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH 409 (481)
T ss_dssp CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC
T ss_pred CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc
Confidence 11110 0 123444554444422 235666778888889999999987 888876555
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
..+++++++... ....++.+.+.++.++.+.|+.. .+..++|+++.+. ++++++.++++|+++.++
T Consensus 410 ~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 410 LGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp SSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567788775311 11235677777663355555432 2356899998753 789999999999998865
No 212
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.90 E-value=1.7e-22 Score=210.30 Aligned_cols=320 Identities=13% Similarity=0.103 Sum_probs=221.8
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCcc-----CCCcEEEeCChHHHHHHHHHHhcC-------------------CCC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTF-----DPDRIVMGGGATGANELIMFCLAN-------------------PGD 136 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~~i~~t~G~t~al~~i~~~l~~-------------------~Gd 136 (477)
.|....+..++++++++|+.+..|.+..+ .....++|+|+|+++..++.+..+ +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46666778899999999999887732111 013689999999999888876521 346
Q ss_pred eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHH
Q 011801 137 AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSL 216 (477)
Q Consensus 137 ~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l 216 (477)
.|+++.++|..+...++.. |++++.++++. ++ +|+++|++++++..+.+..+.+|+++.++|+||.+-+ +++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~~-g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG-GVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH-TCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCchHHHHHHHHHc-CCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHH
Confidence 8999999999999888877 99999999874 56 9999999999876655656788899999999999977 8889
Q ss_pred HHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhc
Q 011801 217 VSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMS 295 (477)
Q Consensus 217 ~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~ 295 (477)
+++|+++|+++++|++|++..+..+.+......+. ....+..+++|.++ ....+|+++..++.. ...+....
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~------~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~~~ 329 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE------SADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNVDP 329 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG------GCSEEEECHHHHSS-CCSSCEEEEESSGGGC--------
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc------cCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcCCc
Confidence 99999999999999999865333322222111111 12356779999987 446789988876543 22221111
Q ss_pred ccCC----------------C----chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 296 SFGL----------------V----SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 296 ~~~~----------------v----s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
.|.. . ..+.++++...+.. ..+++..++..++.+++.+.|++. |+++..+....
T Consensus 330 ~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~ 404 (475)
T 3k40_A 330 LYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGV-----ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMG 404 (475)
T ss_dssp -------------------CCCGGGTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTT
T ss_pred cccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE
Confidence 1100 0 12333443343322 235666777888889999999987 88887655445
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~ 427 (477)
.++++++... ....++.+.+.++.++.+.|+..+ +..++|+++.+. ++++++.++++|+++.++.
T Consensus 405 iv~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 405 LVCFRLKGSN-----ERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCch-----HHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6677765311 112357777777755556555432 356899998753 7899999999999988753
No 213
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.89 E-value=8.8e-22 Score=198.82 Aligned_cols=292 Identities=15% Similarity=0.172 Sum_probs=193.5
Q ss_pred CcHHHHHHH-HHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAV-AKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~ai-a~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
...+|++++ |++++ .++++++++|+++|+.+++.++ ++|||.|+++.|+|+.+...+... |++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~-G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWC-GLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEe
Confidence 468999999 99986 1467899999999999999998 899999999999999999888877 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKF 243 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~ 243 (477)
++. ++|.+|++++++++.+. +.++|+|+ |+||+|...+ +++|.++|+ +|++||+|++|+... +.+
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~---~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~--- 172 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL---KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG--- 172 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH---GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETT---
T ss_pred cCC-ccCCcCHHHHHHHHhcC---CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECC---
Confidence 874 47899999999998432 11388776 6789999988 777888888 999999999997321 111
Q ss_pred ccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccC--------------CCchHHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------LVSSQTQYL 307 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------~vs~~~q~~ 307 (477)
..+... ..+ +.+.|| +|.++ +| +.|+++++++.+.+.++.+..++ .++.+.+.+
T Consensus 173 ~~~g~~------~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~ 242 (377)
T 3ju7_A 173 MHYGQD------FSG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAI 242 (377)
T ss_dssp EETTTT------CSS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHH
T ss_pred EeccCC------CCc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHH
Confidence 111000 113 344554 69998 45 78999998888777766654422 134444444
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC---CeEecCCc--e--EEEEeeccchhhccCchHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG---INCLKSNA--G--LFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g---i~~~~~~~--g--~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+...+.. +.+..++.++..+.+.+.|++++ +.+.+..+ . .|+.+.++... .. .++.+. |
T Consensus 243 ~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~l~~~-L 308 (377)
T 3ju7_A 243 GIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV-----RN-KQVIED-L 308 (377)
T ss_dssp HHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-----CH-HHHHHH-H
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-----hH-HHHHHH-H
Confidence 4444432 22333344455556666676663 22222111 1 23344444311 11 134444 4
Q ss_pred HhcCeEEeCCC--CCCCC--------C---------CCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGS--SFQCT--------E---------PGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~--~f~~~--------~---------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++.||.++.+. .++.. . .+.+|+.+.. +++++++.+++.|++++.+
T Consensus 309 ~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 309 KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 56699988775 22211 0 2369998864 5999999999999988865
No 214
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.89 E-value=1.1e-21 Score=203.64 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCc---EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--------HHhhhCC
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDR---IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR--------DLSWRTG 157 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~---i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--------~~~~~~g 157 (477)
.++++...+.+.+.+| .+++. .++++++++|+..++.++++|||.|++++|.|.++.. .+... |
T Consensus 99 ~~lE~~a~~~~a~l~g----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~-g 173 (490)
T 2a7v_A 99 DEIELLCQRRALEAFD----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-S 173 (490)
T ss_dssp THHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHcC----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHc-C
Confidence 4666444344444433 34442 3556678999999999999999999999999865421 12233 5
Q ss_pred cE--EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-
Q 011801 158 VQ--IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA- 234 (477)
Q Consensus 158 ~~--~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~- 234 (477)
.. +++++++. .++.+|+++|++++++. ++|+|+++.|+||+ ..+ +++|.++|+++|+++++|+++.
T Consensus 174 ~~~~~~~~~vd~-~~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 174 IFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp -------CCBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGH
T ss_pred CeEEEEeccccc-ccCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEcccccc
Confidence 44 34444443 35789999999998754 67888888889885 445 8889999999999999999964
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhccc---
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSF--- 297 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~--- 297 (477)
++++.+....++ . ...+++.|+||.+ .|.|.|+|+++++ .+.+..++....
T Consensus 243 glv~~g~~~~~~----~------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~q 310 (490)
T 2a7v_A 243 GLVAAKVIPSPF----K------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310 (490)
T ss_dssp HHHHTTSSCCGG----G------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTC
T ss_pred ccccCCcCCCCC----C------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCC
Confidence 333333221221 1 1236789999998 4678899998764 233444433222
Q ss_pred CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHH
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+..+.....+++.++.. ..+...++..+++.++++++.+.|.+.|+++..+ ....++|++++... ... +.+
T Consensus 311 ggp~~~~iaAla~Al~~--~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g----~~~--~~~ 382 (490)
T 2a7v_A 311 GGPHNHAIAAVAVALKQ--ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG----LDG--ARA 382 (490)
T ss_dssp CSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTT----CCH--HHH
T ss_pred CCchHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCC----CCH--HHH
Confidence 11222222333323321 1111235667788889999999999999988652 34568899987421 111 124
Q ss_pred HHHHHhcCeEEeCCCCCC---CCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQ---CTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~---~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~ 426 (477)
...|++.||.+..+..++ +..++.+|++... +++++++++++.|.+++..
T Consensus 383 ~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 383 ERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 556678899998654433 2335789997732 4789999999999999864
No 215
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.89 E-value=1.6e-21 Score=199.84 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
..++++++|++++. .+.|++ +++++|+..++.+++++||.|+++.|.|+++...+ +.. |++++.+
T Consensus 60 ~~~l~~~la~~~g~---------~~~v~~-~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEGG---------KAALAT-ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHTC---------SEEEEE-SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHhCC---------CceEEe-cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEEE
Confidence 57899999999862 134554 44599999999999999999999999999877654 444 9999888
Q ss_pred -eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 -HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 -~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.+....
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~ 192 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP 192 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc
Confidence 643 68899888754 7999999999999999999 889999999999999999999323232221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF 283 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~ 283 (477)
. .. +..+++.|+||.+|.+|.|+|++++.
T Consensus 193 ---~-~~--------~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 193 ---L-AW--------GAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp ---G-GG--------TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ---c-cc--------CCeEEEECCcccccCCCCcEEEEEEe
Confidence 1 11 23478899999999999999988874
No 216
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.89 E-value=7.4e-21 Score=192.56 Aligned_cols=291 Identities=16% Similarity=0.160 Sum_probs=191.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-------cCCCCeEEEcCCCccchHHHHhh
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-------ANPGDAFLVPSPYYAAFDRDLSW 154 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-------~~~Gd~vlv~~P~y~~~~~~~~~ 154 (477)
|.+..+..++++++|++++. +++++++++++|+.+++.++ .++||.|+++.|+|+++...++.
T Consensus 30 ~~~~~~~~~l~~~la~~~~~----------~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~ 99 (390)
T 3b8x_A 30 FTMGEYVKQYETQFAKTFGS----------KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ 99 (390)
T ss_dssp CSSCHHHHHHHHHHHHHHTC----------SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHCC----------CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH
Confidence 44556789999999999971 25677777788999999998 78999999999999999988887
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |.+++.++++++ +|.+|+++|++++++ ++++|+++| ++|...+ +++|.++|+++|+++|+|++|+
T Consensus 100 ~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~ 165 (390)
T 3b8x_A 100 Y-GLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCES 165 (390)
T ss_dssp T-TCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTC
T ss_pred c-CCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCc
Confidence 6 999999998753 588999999998853 789998884 5666655 8889999999999999999998
Q ss_pred c-cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC---------------
Q 011801 235 A-TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------- 298 (477)
Q Consensus 235 ~-~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------- 298 (477)
. ..++. .. . +...+...+....+|.++ +| +.|+++++++.+.+.++.....+
T Consensus 166 ~g~~~~~---~~---~----g~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 233 (390)
T 3b8x_A 166 MGATFNN---KC---A----GTFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVK 233 (390)
T ss_dssp TTCEETT---EE---T----TSSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEEC
T ss_pred ccCEECC---cc---c----ccccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccc
Confidence 3 22211 10 0 001111111112356554 34 34999997755554443322111
Q ss_pred --------------C----CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC--CceE-EE
Q 011801 299 --------------L----VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS--NAGL-FF 356 (477)
Q Consensus 299 --------------~----vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~-~~ 356 (477)
. .+.+...++...| + .+++..++.++.++++.+.|+++ |+.+..+ ..++ .+
T Consensus 234 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l---~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 306 (390)
T 3b8x_A 234 SDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL---K----KLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGF 306 (390)
T ss_dssp CSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEE
T ss_pred cccccccccceeccccccCcCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEE
Confidence 0 2333333332323 2 24556667777888899999887 7766543 2332 35
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeC---CCCCCC-C--C-----------------CCEEEEEecc-CCHHH
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP---GSSFQC-T--E-----------------PGWFRVCFAN-MDDDT 412 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p---g~~f~~-~--~-----------------~~~~Rl~~~~-~~~e~ 412 (477)
++.++... .... .++.+.+ .+.||.+++ |+.+.. . . .+.+|+++.. +++++
T Consensus 307 ~i~~~~~~---~~~~-~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d 381 (390)
T 3b8x_A 307 SFIIKKDS---GVIR-KQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE 381 (390)
T ss_dssp EEEECTTS---CCCH-HHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred EEEecCcC---cccH-HHHHHHH-HHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence 56655210 0111 1455555 456999987 332211 0 0 1369999965 49999
Q ss_pred HHHHHHHH
Q 011801 413 LQVALNRI 420 (477)
Q Consensus 413 l~~~l~~l 420 (477)
++.+++.|
T Consensus 382 i~~i~~~l 389 (390)
T 3b8x_A 382 IDYLREVL 389 (390)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998876
No 217
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.88 E-value=9.2e-22 Score=201.05 Aligned_cols=240 Identities=17% Similarity=0.115 Sum_probs=169.9
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH-----
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD----- 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~----- 151 (477)
.|+++ |..+|++.+|++++ .+..++ ++|+++|+..++.++++|||.|++++ |.|+++...
T Consensus 69 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 137 (427)
T 3i16_A 69 GYGDI-GRDSLDAVYARVFN----------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITE 137 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred CCCHH-HHHHHHHHHHHHhC----------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence 35554 57889999999987 233355 78889999999999999999999999 999987743
Q ss_pred ------HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHH
Q 011801 152 ------LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 152 ------~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~ 221 (477)
++.. |++++.++++. ++.+|++++++++++ ..++|+|++++ |+||||.+ .++++|+++|+
T Consensus 138 ~~~~~~l~~~-G~~~~~v~~~~--~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 138 NSNMGSLKEF-GINYKQVDLKE--DGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CCSSCCTGGG-TCEEEECCCCT--TSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred cchHHHHHHc-CCEEEEecCcc--CCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 3444 99999998764 457899999999862 12899999999 99999876 45999999999
Q ss_pred h--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hccc
Q 011801 222 D--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSSF 297 (477)
Q Consensus 222 ~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~~ 297 (477)
+ +|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.||++++++ +++.++. ....
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p-~-----------~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~-li~~l~~~~~~~ 274 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKEP-T-----------DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVP 274 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSCG-G-----------GGTCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHHHHSCT
T ss_pred HhCCCCEEEEECCCccccccCCc-c-----------ccCCeEEEecCcccCCCCCCceEEEEEECHH-HHHHHHHhcccC
Confidence 9 99999999999865433221 1 1133478999999998555 66799999654 4444443 2221
Q ss_pred --CC-Cch-HH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeecc
Q 011801 298 --GL-VSS-QT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLR 361 (477)
Q Consensus 298 --~~-vs~-~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~ 361 (477)
+. +++ +. ..++...+ ..+..+.+++.++...+.+.|+++|+++.+.... +.+.+.+.
T Consensus 275 ~~g~~~~~~~~~a~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 275 GIGGECGSTFGVVRSMYQGL-------FLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFN 340 (427)
T ss_dssp TTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECS
T ss_pred ccCccCCccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEEC
Confidence 11 111 11 12222222 1234556677888899999999999988654221 25556665
No 218
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.88 E-value=1.4e-21 Score=203.30 Aligned_cols=345 Identities=13% Similarity=0.104 Sum_probs=212.1
Q ss_pred CCCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+.. .+ +.+.+.+++.+.... .+ +.....|+. ....++++++++.+.+..+ .
T Consensus 59 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-----~~---~~~~~~~~~-~~~~~l~~~la~~l~~~~~----~ 125 (472)
T 1ohv_A 59 DVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV-----ST---FINRPALGI-LPPENFVEKLRESLLSVAP----K 125 (472)
T ss_dssp BTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGH-----HH---HHCCCCTTT-SCBTTHHHHHHHTGGGGCC----T
T ss_pred eCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhh-----cc---ccccccccc-ccHHHHHHHHHHHHHHhCC----C
Confidence 344567899876543 23 356666766553110 00 001112332 2357999999997776543 2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--------C-----------------CC---CeEEEcCCCccchHHHHhhhCCcE--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--------N-----------------PG---DAFLVPSPYYAAFDRDLSWRTGVQ-- 159 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--------~-----------------~G---d~vlv~~P~y~~~~~~~~~~~g~~-- 159 (477)
.+++|++++|+++|++.+++.+. . || +.|++.+++|+++...+...+|..
T Consensus 126 ~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~ 205 (472)
T 1ohv_A 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI 205 (472)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH
T ss_pred CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc
Confidence 57899999999999999998763 1 46 899999999998765543222321
Q ss_pred -----------EEEEeccC---CCC--c-----ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHH
Q 011801 160 -----------IVPVHCDI---SNN--F-----KITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLV 217 (477)
Q Consensus 160 -----------~~~v~~~~---~~~--f-----~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~ 217 (477)
.+++|... ... + ..|+++|++++++....+.++++|++...+|++|. ..+.+.+++|.
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~ 285 (472)
T 1ohv_A 206 HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 285 (472)
T ss_dssp HHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHH
T ss_pred cccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHH
Confidence 12332110 000 1 12578888888754222236787776655788997 56799999999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC--CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN--RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~--~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~ 295 (477)
++|+++|+++|+||+|.++.+.+. +...... +.. .+ +.||||.+ +.| ||++ +++ +.. .....
T Consensus 286 ~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~----gv~~~~D----i~t~sK~~-l~G---G~~~-~~~-~~~-~~~~~ 349 (472)
T 1ohv_A 286 DISRKHGCAFLVDEVQTGGGSTGK-FWAHEHW----GLDDPAD----VMTFSKKM-MTG---GFFH-KEE-FRP-NAPYR 349 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSS-SSGGGGG----CCSSCCS----EEEECGGG-SSE---EEEE-CGG-GSC-SSSSS
T ss_pred HHHHHhCCEEEEeCcccCCCCCCC-chhcccc----CCCCCCC----EEEEcccc-ccC---CccC-chh-hcc-ccccc
Confidence 999999999999999987544432 2222211 101 22 34899994 345 7766 333 321 11111
Q ss_pred ccC--CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----C--CeEecCCceEEEEeeccchhhcc
Q 011801 296 SFG--LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----G--INCLKSNAGLFFWMDLRHLLKEK 367 (477)
Q Consensus 296 ~~~--~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----g--i~~~~~~~g~~~~~~l~~~~~~~ 367 (477)
.++ ..++++|.++.+.|+.. ++ ....++++++++++.+.|+++ . +....+. |+|++++++..
T Consensus 350 ~~~T~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~---- 419 (472)
T 1ohv_A 350 IFNTWLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE---- 419 (472)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH----
T ss_pred ccCccCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCCh----
Confidence 122 25677888777666421 11 123345555556666666543 1 3334444 56777887642
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
....++++.+++ .||.+.|+. .+++|++++.. +++++++++++|++++++
T Consensus 420 --~~~~~~~~~l~~-~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 420 --SIRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp --HHHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 112357777775 599998852 56899988754 899999999999999875
No 219
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.88 E-value=1.1e-21 Score=199.56 Aligned_cols=238 Identities=15% Similarity=0.099 Sum_probs=169.5
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH-----
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD----- 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~----- 151 (477)
.|++. |..+|++.+|++++ .+..++ ++|+++|+.+++.++++|||.|++++ |.|..+...
T Consensus 55 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g 123 (409)
T 3jzl_A 55 GYDDE-GRDTLERVYATVFK----------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRK 123 (409)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSS
T ss_pred CCChh-HHHHHHHHHHHHhC----------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhccc
Confidence 45554 57889999999986 234455 88999999999999999999999998 999988743
Q ss_pred -----HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHHh
Q 011801 152 -----LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 -----~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
++.. |+++..+++++ ++.+|++++++++++ ++|+|++++ |+||||.+. ++++|+++|++
T Consensus 124 ~~~~~l~~~-G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~---~l~~I~~la~~ 191 (409)
T 3jzl_A 124 QGQGSLKDF-HIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIE---KIKEMIVFVKN 191 (409)
T ss_dssp SSSSCTGGG-TCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHH---HHHHHHHHHHH
T ss_pred chhhHHHHc-CCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccc---cHHHHHHHHHh
Confidence 3445 89999988764 578999999998854 799999999 999999875 48899999999
Q ss_pred --cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hcc--
Q 011801 223 --KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSS-- 296 (477)
Q Consensus 223 --~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~-- 296 (477)
+|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.||++++++ +.+.++. ...
T Consensus 192 ~~~~~~livD~a~~~~~~~~~p-~-----------~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~-li~~l~~~~~~~~ 258 (409)
T 3jzl_A 192 INPEVIVFVDNCYGEFVEYQEP-P-----------EVGADIIAGSLIKNPGGGLAKTGGYIAGKEA-LVDLCGYRLTTPG 258 (409)
T ss_dssp HCTTCEEEEECTTCTTTSSCCS-G-----------GGTCSEEEEETTSGGGTTTCSSCEEEEECHH-HHHHHHHHHSCTT
T ss_pred hCCCCEEEEeCCcccccccCCc-c-----------ccCCeEEEECccccCCccCCceEEEEEeCHH-HHHHHHHHhcccc
Confidence 99999999999865433222 1 1133488999999998555 44699999654 4444433 222
Q ss_pred cC--CCchHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc----eEEEEeecc
Q 011801 297 FG--LVSSQT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA----GLFFWMDLR 361 (477)
Q Consensus 297 ~~--~vs~~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~----g~~~~~~l~ 361 (477)
.+ ..+... +.++...+. .+..+.++..++...+.+.|+++|+++.+... .+.+.+.+.
T Consensus 259 ~g~~~g~~~~~~~~~l~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 259 IGREAGASLYSLLEMYQGFF-------LAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFH 323 (409)
T ss_dssp TGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECS
T ss_pred ccccccccHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeC
Confidence 11 111111 222222221 13445667778889999999999998865422 124556665
No 220
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.88 E-value=1e-21 Score=200.70 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=169.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHH------
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDR------ 150 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~------ 150 (477)
.|+++ |..+|++.+|++++ .+..++ ++|+++|+..++.++++|||+|++++ |.|+++..
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred CCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhcccc
Confidence 45555 67899999999986 344456 78889999999999999999999999 99988763
Q ss_pred -----HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHH
Q 011801 151 -----DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 151 -----~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~ 221 (477)
.++.. |++++.++. .++.+|++++++++++ +.++|+|++++ |+||||.+. ++++|+++|+
T Consensus 139 ~~~~~~l~~~-G~~~~~v~~---~~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~---dl~~i~~ia~ 207 (427)
T 3hvy_A 139 SKKVGSLREY-GVKYKMVDL---KDGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIA---EIAEIIKSIR 207 (427)
T ss_dssp TCCSCCTGGG-TCEEEECCC---BTTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHH---HHHHHHHHHH
T ss_pred chhhhHHHHc-CCEEEEecC---CCCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccHH---HHHHHHHHHH
Confidence 33444 999998887 2568999999999873 13899999999 999998764 5899999999
Q ss_pred h--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-ccc
Q 011801 222 D--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-SSF 297 (477)
Q Consensus 222 ~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-~~~ 297 (477)
+ +|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.|||++++ .+.+.++.. ...
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p-~-----------~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~-~li~~l~~~~~~~ 274 (427)
T 3hvy_A 208 EVNENVIVFVDNCYGEFVEEKEP-T-----------DVGADIIAGSLIKNIGGGIATTGGYIAGKE-EYVTQATFRVTVP 274 (427)
T ss_dssp HHCSSSEEEEECTTCTTTSSSCG-G-----------GGTCSEEEEETTSGGGTTTCCSCEEEEECH-HHHHHHHHHHSCT
T ss_pred HhCCCCEEEEECCccccccCCCC-c-----------ccCCeEEEECCcccccccccceEEEEEECH-HHHHHHHHHhhcC
Confidence 9 89999999999865433221 1 1133488999999998444 4569999954 454444432 211
Q ss_pred CC---Cch-HH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeecc
Q 011801 298 GL---VSS-QT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLR 361 (477)
Q Consensus 298 ~~---vs~-~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~ 361 (477)
+. .++ +. ..++...+. .+..+.++..++...+.+.|+++|+++.+.... +.+.+.+.
T Consensus 275 ~~g~~~~~~~~~a~~~~~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 275 GIGGECGSTFGVMRSLYEGLF-------MAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp TTGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS
T ss_pred CcccccCCCHHHHHHHHHhHh-------HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC
Confidence 11 111 22 222222221 134456677788889999999999888654322 25666665
No 221
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.87 E-value=1.3e-21 Score=201.42 Aligned_cols=282 Identities=14% Similarity=0.160 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH-hcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC-LANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~-l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
.++++.++++++ .+++++++++|++.+++.+..+ ..++||.|+++.|+|+.+...++. ..|++++.++
T Consensus 111 ~~~~~~la~~~g--------~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~ 182 (438)
T 1wyu_A 111 FEYQTMIAELAG--------LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLP 182 (438)
T ss_dssp HHHHHHHHHHHT--------SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHhC--------CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEc
Confidence 455666666654 4577889999999554444433 247899999999999988755432 2399999998
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc--c-ccccccCCC
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE--I-YAATVFSSP 241 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De--~-y~~~~~~~~ 241 (477)
.+ ++.+|+++ +. .++++|++++| ||||.+.+ +++|+++|+++|+++|+|- . |.. +.
T Consensus 183 ~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~--~~-- 241 (438)
T 1wyu_A 183 LE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGV--LK-- 241 (438)
T ss_dssp CB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGT--BC--
T ss_pred Cc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccC--cC--
Confidence 62 35677665 32 27999999999 99999997 8889999999999999552 2 321 11
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccC----CCCceEEEEEeCCHHHHHHH--------------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMG----LPGFRVGIVYSFNDTVVNCG-------------------------- 291 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g----~~G~RvG~i~~~~~~i~~~~-------------------------- 291 (477)
..... +..+++.| +|.|| +.|.|+||++++++.+....
T Consensus 242 ---~~~~~--------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~ 309 (438)
T 1wyu_A 242 ---PPGAY--------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQY 309 (438)
T ss_dssp ---CHHHH--------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHH
T ss_pred ---CCccC--------CCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccc
Confidence 11111 22255666 66554 45679999999765332210
Q ss_pred -HHhcccCCC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhc
Q 011801 292 -RKMSSFGLV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKE 366 (477)
Q Consensus 292 -~~~~~~~~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~ 366 (477)
+.......+ +......++..+.... +..+++..+++.++++++.+.|++. |+++..+. .+|.++.++...
T Consensus 310 ~r~~~~t~~~~~~~~~~a~~aa~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~-- 384 (438)
T 1wyu_A 310 IRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK-- 384 (438)
T ss_dssp HHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS--
T ss_pred cchhcccCCccchHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCCC--
Confidence 000111111 1121111111122111 2235677788889999999999998 99887653 234333332111
Q ss_pred cCchHHHHHHHHHHHhcCeEE--eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 367 KTLEGEIALWRTIVNDVKLNV--SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 367 ~~~~~e~~l~~~ll~~~gI~v--~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
...++.+.+.+ .||.+ .+|..|. ++++|+|+... +++++++++++|++++
T Consensus 385 ----~~~~~~~~L~~-~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 ----DPEAVRRALAE-RGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ----CHHHHHHHHHH-TTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHH-CCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 12256677765 59998 7777664 67999999854 8999999999998764
No 222
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.86 E-value=6e-21 Score=206.63 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=195.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCcEEEEEec
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGVQIVPVHC 165 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~~~~~v~~ 165 (477)
-..++++.+|++++ .+ ..+++++|+++++.+++.+++++||.|+++.|+|..+... +... |++++.++.
T Consensus 174 ~i~e~e~~lA~~~g--------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~-Ga~~v~v~~ 243 (730)
T 1c4k_A 174 PAVAAEKHAARVYN--------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHHTT--------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECE
T ss_pred HHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHC-CCEEEEEeC
Confidence 36899999999987 22 4588999999999999999999999999999999988877 6665 999988876
Q ss_pred cCCCCcc----cCHHHH-----HHHHHHH-HH--hCCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 166 DISNNFK----ITREAL-----EAAYERA-QE--ASINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 166 ~~~~~f~----i~~~~l-----~~~~~~~-~~--~~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
+. ++|. +|+++| ++++++. .+ ...++ |+|++++| ||+|.+.+ +++|+++|+++|++||+||+
T Consensus 244 ~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 244 NR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECT
T ss_pred Cc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcc
Confidence 53 2343 688888 6666431 00 01122 89999999 69999988 88999999999999999999
Q ss_pred cccc-ccCCCCcccHHHh-hhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHH--------HHHHHH---hcccC
Q 011801 233 YAAT-VFSSPKFTSVAEV-IQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTV--------VNCGRK---MSSFG 298 (477)
Q Consensus 233 y~~~-~~~~~~~~s~~~~-~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i--------~~~~~~---~~~~~ 298 (477)
|++. .|.+. ......+ .++.+.+..+++++.|+||.+ +|++. |+++.+++.+ ....+. +...+
T Consensus 319 h~~~~~f~~~-~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~st 395 (730)
T 1c4k_A 319 WVGYEQFIPM-MRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMST 395 (730)
T ss_dssp TCCGGGSSGG-GGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCS
T ss_pred cccccccCcc-cCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCC
Confidence 9753 34321 1000001 000011234678999999986 56664 5665544332 111111 11112
Q ss_pred CCchHHHHH---HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--CCCeEecCC----------------------
Q 011801 299 LVSSQTQYL---LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ--VGINCLKSN---------------------- 351 (477)
Q Consensus 299 ~vs~~~q~~---~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~--~gi~~~~~~---------------------- 351 (477)
+.+.....+ +..++.... -.+..+++.+..+.+.+.|.+ .|+++..+.
T Consensus 396 sp~~~~iaal~aA~~~l~~~~-----g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 396 SPFYPMYAALDVNAAMQEGEA-----GRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp SCCHHHHHHHHHHHHHHSHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred CCcHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 233332222 233333211 123345566667778888877 477765432
Q ss_pred ---------------ce-EE-----EEeeccch------hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 352 ---------------AG-LF-----FWMDLRHL------LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 352 ---------------~g-~~-----~~~~l~~~------~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
.+ ++ +.+..+.. .....+.. .++.+.| .++||.+... +.+++|++
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~-~~l~~~L-~e~GI~v~~~------~~~~ir~~ 542 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPA-TIVANYL-RDHGIIPEKS------DLNSILFL 542 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCH-HHHHHHH-HHTTCCCSEE------CSSEEEEE
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCH-HHHHHHH-HHCCcEEEEC------CCCeEEEE
Confidence 11 12 34555421 00001111 2344544 4559987643 35679998
Q ss_pred eccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 405 FANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 405 ~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
++.. ++++++.++++|+++.+.+.
T Consensus 543 ~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 543 MTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8653 88999999999999987653
No 223
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.85 E-value=2e-20 Score=204.13 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..++++.++++++ . .+.+++++|+++|+.+++.++++|||.|+++.|+|..+...+... |++++.++.+.
T Consensus 207 v~~~ee~la~l~G--------~-d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~-G~~~v~v~~~~ 276 (755)
T 2vyc_A 207 FGESEKYAARVFG--------A-DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLT-GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHH-CCEEEEECCCB
T ss_pred HHHHHHHHHHHhC--------C-CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCCC
Confidence 5788888888886 2 246889999999999999999999999999999999988888877 99999998764
Q ss_pred CCCcc----c-----CHHHHHHHHHHHH----HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 168 SNNFK----I-----TREALEAAYERAQ----EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 168 ~~~f~----i-----~~~~l~~~~~~~~----~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
+ +|. + |+++|++++++.. ..+.++++++++|| ||+|.+.+ +++|+++|+++|++||+||+|+
T Consensus 277 ~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp C-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTC
T ss_pred C-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCc
Confidence 2 343 4 9999999997521 12345568999998 79999988 8889999999999999999997
Q ss_pred cc-ccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCH
Q 011801 235 AT-VFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFND 285 (477)
Q Consensus 235 ~~-~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~ 285 (477)
+. .|... +...+ .. ...+...++++++.|+||.+ +|++ .|+++.+++
T Consensus 352 ~~~~~~~~~~~~~~~-~g-~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 352 GYARFNPIYADHYAM-RG-EPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp TTGGGCGGGTTSSSS-CS-CCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred hhcccCcccCCcchh-cC-CcCCccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 53 23321 11111 11 00011235778999999986 5666 677776544
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.85 E-value=1.7e-20 Score=192.35 Aligned_cols=254 Identities=17% Similarity=0.146 Sum_probs=168.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHHHh----------hhC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRDLS----------WRT 156 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~~~----------~~~ 156 (477)
..++++.++++++ ......+++++ ++++|+..++.++++|||.|++++ |.|+.+...+. ..
T Consensus 67 ~~~l~~~la~~~g------~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~- 138 (431)
T 3ht4_A 67 RDTLEKVYADVFG------AEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY- 138 (431)
T ss_dssp HHHHHHHHHHHTT------CSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG-
T ss_pred HHHHHHHHHHHhC------CCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc-
Confidence 3455555555554 11112233355 668999999999999999999998 99998876543 34
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT-NPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIY 233 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y 233 (477)
|++++.++.+. ++.+|+++|++++++ ++++|+++ +|+||+|.+.+.+++++|+++|++ +|+++|+||+|
T Consensus 139 G~~~~~v~~~~--~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~ 210 (431)
T 3ht4_A 139 NIGYNAVPLTE--GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCY 210 (431)
T ss_dssp TCEEEECCBCT--TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred CCEEEEeCCCC--CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 99999998864 478999999998864 89999999 599999999999999999999999 99999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhcccCC---C-chHH-HHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSSFGL---V-SSQT-QYL 307 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~~~~---v-s~~~-q~~ 307 (477)
+.+.+...+ . ..+..++++|+||.+|- .+...||++++++.+..........+. . +++. +.+
T Consensus 211 ~~~~~~~~~-~-----------~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~ 278 (431)
T 3ht4_A 211 GEFIEEQEP-C-----------HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQE 278 (431)
T ss_dssp CTTSSSCCG-G-----------GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHH
T ss_pred hhhccCCCc-c-----------ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHH
Confidence 976543321 1 11234889999999652 113339999965444333332222111 1 1111 122
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+...+. .+....+++.++.+.+.+.|+++|+++.+.. .++.+.+.++.. +.-.++++.+...
T Consensus 279 ~~~~l~-------~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 279 MYQGFF-------LAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred HHhHhh-------hHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 222221 1344556677788889999999998775432 223556666531 2223456655543
No 225
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.75 E-value=5.5e-23 Score=212.18 Aligned_cols=337 Identities=12% Similarity=0.085 Sum_probs=205.4
Q ss_pred CCCCcccccccccccc--c--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAENQ--L--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+... + +.+.+.+.+.+..+. + ....|+. ....+|.+.+++++.
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~------~-----~~~~~~~-~~~~~Lae~L~~~~p--------- 154 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV------G-----LNLSTQT-ENEALFAEAVCDRFP--------- 154 (465)
Confidence 3445668998776543 3 345566655553210 1 0123432 234677777777662
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHh---hhCCc--EEEEEeccCCCCcccCHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLS---WRTGV--QIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~---~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+.+++++++++|++.+++... ..++.|++.+++|++....+. ...|+ .++.++. -|+++|++++
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l 227 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLL 227 (465)
Confidence 25789999999999999998752 345899999999987654332 01133 2333332 2688898888
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. +.++++|++....+++|.+. +.+.+++|.++|+++|+++|+||+|. +.. ++. ... +. .+...
T Consensus 228 ~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~-~a~-~~-------~gv~p 293 (465)
T 2yky_A 228 KRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGG-GAQ-EM-------LGISA 293 (465)
Confidence 742 23677766654356699655 57789999999999999999999998 522 221 111 11 11222
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHH------HhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR------KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~------~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
-+.||||.+| .|+|+||++++++.+..... ........++++|.++.+.|+.-+ + ....+++.++.++
T Consensus 294 Di~t~sK~lg-~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~--~---~~~~~~~~~~~~~ 367 (465)
T 2yky_A 294 DLTTLGKYIG-GGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY--T---RQAASDLSASGDR 367 (465)
Confidence 3459999999 59999999996654433222 011112366778887766665311 0 1123334444444
Q ss_pred HHHHHhhC----CCeEecCCceEEEEeeccc-hhhc------cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 336 FTKGLEQV----GINCLKSNAGLFFWMDLRH-LLKE------KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 336 l~~~L~~~----gi~~~~~~~g~~~~~~l~~-~~~~------~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
+.++|++. ++....+..|.++|+.++. .... ...+....++..+++ .||.+.|+. |.. ++
T Consensus 368 l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~~-------~s 438 (465)
T 2yky_A 368 FRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MYA-------LS 438 (465)
Confidence 55544443 4333334567899998864 1100 000112356677774 599999875 321 56
Q ss_pred eccCCHHHHHHHHHHHHHHHhhhh
Q 011801 405 FANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 405 ~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+. .+++++++++++|++++++.+
T Consensus 439 ~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 439 LE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 54 489999999999999987643
No 226
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.78 E-value=3.4e-18 Score=183.77 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=128.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
-..++++.+|++++. ...+++++|++.|+..++.++++|||.|+++.++|..+...+... |++++.++.+
T Consensus 196 ~i~eaE~~lA~~fGa---------~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~ls-Ga~pv~v~~~ 265 (715)
T 3n75_A 196 PHKEAEQYIARVFNA---------DRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMS-DVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHHTC---------SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHS-CCEEEEECCC
T ss_pred HHHHHHHHHHHHhCC---------CCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecc
Confidence 367999999999972 345778899899999999999999999999999999999888876 9999999876
Q ss_pred CCCCccc---------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 167 ISNNFKI---------TREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 167 ~~~~f~i---------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
. +.|.+ |+++|++++++... ..+++++++++| ||+|.+++ +++|+++|++++ +|+||+|++.+
T Consensus 266 ~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~ 337 (715)
T 3n75_A 266 R-NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYT 337 (715)
T ss_dssp B-CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTG
T ss_pred c-cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEcccccccc
Confidence 4 35654 89999999975211 012348999999 99999999 666777776653 78999998653
Q ss_pred -cCCCCcccHHHhhhhccCCCCcE-EEEecCCcccCCCCc-eEEEEEeCCH
Q 011801 238 -FSSPKFTSVAEVIQEMDCNRDLI-HIIYSLSKDMGLPGF-RVGIVYSFND 285 (477)
Q Consensus 238 -~~~~~~~s~~~~~~~~~~~~~~v-iiv~SlSK~~g~~G~-RvG~i~~~~~ 285 (477)
|.. .+.....+.. +...+.+ +++.|+||+++ |+ ..|+++++++
T Consensus 338 ~f~~-~~~~~~al~~--g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~ 383 (715)
T 3n75_A 338 NFSP-IYEGKCGMSG--GRVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (715)
T ss_dssp GGSG-GGTTSSTTSS--SCCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred ccCC-cccccccccc--CcCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence 332 1111111100 0012443 56899999975 44 3588887654
No 227
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=167.59 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCC-CcEEE-eCChHHHHHHHHHHhcCC--CCeEEEcCCCccc--hHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDP-DRIVM-GGGATGANELIMFCLANP--GDAFLVPSPYYAA--FDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~-~~i~~-t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~--~~~~~~~~~g~~~~ 161 (477)
+.+.|+.++++++ .++ ++|++ |+|+|+++++++..+..+ ||++++..-.+.+ +...++.. |..++
T Consensus 60 ~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~-G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKF-GTINI 130 (377)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTT-SEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHh-CCceE
Confidence 4677888888886 333 57888 589999999999998765 8998876655433 22334444 87777
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++. ++.+++++++.++. .++++|.+++.+|.||++.+. +|+++|+++++|.+.+ +...
T Consensus 131 ~~~~~~--~~~~~~~~~~~~i~------~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~---~g~~ 191 (377)
T 3e77_A 131 VHPKLG--SYTKIPDPSTWNLN------PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSN---FLSK 191 (377)
T ss_dssp CSCCCS--SSCSCCCGGGCCCC------TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTT---TTSS
T ss_pred EeccCC--CcCCCCChHHhccC------CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcccc---cCCC
Confidence 666653 33455665554432 378999999888999999994 3678899999999997 4433
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-------------HHHHHHhcccCCCchHHHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-------------VNCGRKMSSFGLVSSQTQYLL 308 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-------------~~~~~~~~~~~~vs~~~q~~~ 308 (477)
+ ..+.+ .+ +++.|..|.+|.+| +|+++..++.+ .........+++.+...-+++
T Consensus 192 ~-id~~~--------~~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l 258 (377)
T 3e77_A 192 P-VDVSK--------FG--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVM 258 (377)
T ss_dssp C-CCGGG--------CS--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHH
T ss_pred C-Cchhh--------cC--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHH
Confidence 3 33222 23 36688899999778 77777755432 111111223445555555555
Q ss_pred HHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 309 ASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 309 ~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
...|+ ++.+ -+++..++.++..+++.++|++. |+.+.+. .++..+.+.++.......+ +..+...+.
T Consensus 259 ~~al~---~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~--~~~~l~~l~- 332 (377)
T 3e77_A 259 GLVLE---WIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL--EKRFLDKAL- 332 (377)
T ss_dssp HHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHH--HHHHHHHHH-
T ss_pred HHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhH--HHHHHHHHH-
Confidence 55543 2222 25667778888889999999988 7764321 2233455666642110111 113444444
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
++||.+++|.. ..+++|+|+.+. ++++++.+++.|+++++++
T Consensus 333 ~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 333 ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 56999988853 245699999875 8999999999999999763
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.75 E-value=2.9e-17 Score=165.66 Aligned_cols=287 Identities=12% Similarity=0.067 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccC-CCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFD-PDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~ 161 (477)
.-+.+.|+.+|++++ .+ +++|++ |+|+|+++++++..++.+||++++..-.+.+ +...++.. | ++.
T Consensus 72 ~~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~-G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKY-C-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-S-EEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHh-C-CeE
Confidence 347899999999997 32 346888 6999999999999999999998754433322 22334444 8 888
Q ss_pred EEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 162 PVHCD-ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 162 ~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
.++++ ...++.+++++++.++. .++++|.+++-+|.||++ .+ +++|. +|+++++|.+.+ +.
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~------~~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs---~g 204 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLS------DNAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSST---IL 204 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCC------TTCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTT---TT
T ss_pred EEecCcccCCCCCCchHHHhhcC------CCCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEcccc---cC
Confidence 88876 12344366677766554 378899999888899996 66 33342 799999999997 43
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-------------HHHHHhcccCCCchHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-------------NCGRKMSSFGLVSSQTQY 306 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-------------~~~~~~~~~~~vs~~~q~ 306 (477)
..+ ..+.+ .+ +++.|..|.+|.+| +|+++..++.+. ........+++.+.....
T Consensus 205 ~~p-idv~~--------~~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~ 271 (386)
T 3qm2_A 205 SAP-LDVSR--------YG--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWY 271 (386)
T ss_dssp SSC-CCGGG--------CS--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHH
T ss_pred CCC-CCccc--------cC--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHH
Confidence 333 33222 23 35689999999777 888888655321 011111123334444444
Q ss_pred HHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhCCCe-Ee-cC--CceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 307 LLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQVGIN-CL-KS--NAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~gi~-~~-~~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
++..+++ ++.+. +++..++.++..+++.++|++.|+. .. .+ .....+.+.++.. ..+ .++... +
T Consensus 272 ~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~----~~~--~~~~~~-L 341 (386)
T 3qm2_A 272 LSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN----TLD--KVFLEE-S 341 (386)
T ss_dssp HHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG----GGH--HHHHHH-H
T ss_pred HHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc----ccc--HHHHHH-H
Confidence 4444443 22222 5677778888889999999988752 21 11 1223455666631 111 134444 5
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+++||.+++|..+ .+.+|+|+.+. ++++++.+++.|+++.++
T Consensus 342 ~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 342 FAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp HHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 6779999887543 24599999875 899999999999999876
No 229
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.74 E-value=2e-16 Score=158.00 Aligned_cols=331 Identities=14% Similarity=0.161 Sum_probs=201.0
Q ss_pred CCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC--CCCcHHHHHHHHHHHhcccCCCCccC-CC
Q 011801 36 NPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD--YHGLPEFRQAVAKFMGKGRGGRVTFD-PD 112 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~-~~ 112 (477)
|+..++.|+-+..+++...++.......+. ...+.+..+ ...... ..-+.+.|+.++++++ .+ ++
T Consensus 2 ~~~~~~~f~pgpt~~~~~V~~a~~~~~~~~---~~~~~s~~~-~~hr~~~~~~~~~~~r~~la~ll~--------~~~~~ 69 (361)
T 3m5u_A 2 NAMRKINFSAGPSTLPLEILEQAQKELCDY---QGRGYSIME-ISHRTKVFEEVHFGAQEKAKKLYE--------LNDDY 69 (361)
T ss_dssp --CCCEECCSSSCCCCHHHHHHHHHTSSSG---GGSSSCGGG-SCSSSHHHHHHHHHHHHHHHHHHT--------CCTTE
T ss_pred CccceEeecCCCCCCcHHHHHHHHHHHHhc---ccCCceeec-cCCCCHHHHHHHHHHHHHHHHHhC--------CCCCc
Confidence 455667788777777766655544432110 000100000 000000 1125677788888886 33 45
Q ss_pred cEEE-eCChHHHHHHHHHHhcCCCCeEE-EcCCCccc-hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVM-GGGATGANELIMFCLANPGDAFL-VPSPYYAA-FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~-t~G~t~al~~i~~~l~~~Gd~vl-v~~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+|++ |+|+|+++++++..+. +||+++ +.+-.|.. +...++.. |+++..++++..+.+.++++. + ++
T Consensus 70 ~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~-G~~v~~~~~~~~g~~~~~~~~-~--l~------ 138 (361)
T 3m5u_A 70 EVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQIL-GVNVKTVASSEESNFDHIPRV-E--FS------ 138 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHT-TCCEEEEEECTTTTSCSCCCC-C--CC------
T ss_pred eEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHc-CCceEEEecccCcCCCcCChh-h--cC------
Confidence 7887 9999999999999988 888653 22223321 22334444 899988888765444344444 3 43
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
.++++|.+++.+|.||+..+. +++ +|+++++|.+.+ +...+ ..+. +..+++.|..|.
T Consensus 139 ~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~---~g~~~-id~~----------~~d~~~~s~~K~ 195 (361)
T 3m5u_A 139 DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSD---FFSRK-VDFS----------NIALFYGGVQKN 195 (361)
T ss_dssp TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGG---TTSSC-CCCT----------TEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccc---cCCCC-CCcc----------cCCEEEEechhc
Confidence 278999999888999998772 233 499999999997 43322 2211 223677899999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHH--------------HhcccCCCchHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGR--------------KMSSFGLVSSQTQYLLASMLSDDEFVDNF--LVETSKRLAKRH 333 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~--------------~~~~~~~vs~~~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~ 333 (477)
+|.+| +|+++..++.+..... ....+++.+....+++..+|+ ++.+. +++..++.++..
T Consensus 196 ~gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 196 AGISG--LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WLLNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp SSCTT--CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HHHTTTCHHHHHHHHHHHH
T ss_pred cCCCc--cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHH
Confidence 99777 7888886654432211 111234445444444444443 11222 466677788888
Q ss_pred HHHHHHHhhCC-C-eEecC---CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC
Q 011801 334 HNFTKGLEQVG-I-NCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM 408 (477)
Q Consensus 334 ~~l~~~L~~~g-i-~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~ 408 (477)
+++.++|++++ + ..... .....+.+.++.. ..++ + ++. ..++++||.+++|... .+.+|+|+.+.
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~-~-~~~-~~L~~~gI~~~~g~~~----~g~iRiS~~~~ 340 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE-P-LFV-KEAEEAGMIGLKGHRI----LGGIRASIYNA 340 (361)
T ss_dssp HHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH-H-HHH-HHHHHTTEECCBCCTT----TCSEEEECCTT
T ss_pred HHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh-H-HHH-HHHHHCCCEEecCCCc----cCeEEEEccCC
Confidence 99999999886 5 44321 1222455566531 0111 1 344 3456779999887532 24599999875
Q ss_pred -CHHHHHHHHHHHHHHHhhh
Q 011801 409 -DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 409 -~~e~l~~~l~~l~~~~~~~ 427 (477)
++++++.+++.|+++.+++
T Consensus 341 ~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 341 LNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998763
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.67 E-value=4.9e-15 Score=151.87 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=191.9
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.++ .+.+.+++.+.-+. + .....+ ..-..++.+.+++.+.
T Consensus 83 D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~------~----~~~~~~--~~~~~~lae~l~~~~p--------- 141 (454)
T 4ao9_A 83 DADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG------G----INLTGH--NLLEGRLARLICERFP--------- 141 (454)
T ss_dssp ETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT------C----SCCCSE--ESSHHHHHHHHHHHST---------
T ss_pred ECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhc------C----CCccCC--cHHHHHHHHHHHHhCC---------
Confidence 4556678998543 44453 46666655542110 0 011111 1223566666666653
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhC-----CcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRT-----GVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~-----g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+.+++++++++|++.+++... ...++|+...-+|.+......... ......+|.+ |.+++++.+
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-------d~~~l~~~l 214 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-------DAQTARAQI 214 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-------CHHHHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-------hHHHHHHHH
Confidence 35789999999999999987642 223678888888877442211111 1233333321 688898888
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. +.++.+|++.--....|.+ .+++.|++|.++|++||+++|+||+..+ ..+..+. .+.. +..+| +
T Consensus 215 ~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a--~e~~---gv~PD--i 282 (454)
T 4ao9_A 215 ERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGL--ANKL---GIRSD--L 282 (454)
T ss_dssp HHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCH--HHHH---TCCCS--E
T ss_pred hhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccc--hhcc---CCCCc--E
Confidence 753 3467776664334556755 4677799999999999999999999974 2333322 1221 22344 2
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHHH-hccc-----CCCchHHHHHHHHh---cCChhhHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-MSSF-----GLVSSQTQYLLASM---LSDDEFVDNFLVETSKRLAKR 332 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-~~~~-----~~vs~~~q~~~~~~---L~~~~~~~~~~~~~~~~l~~r 332 (477)
-+++|.+| .|+.+|.+++..+ +.+.+.. ...+ ...++++..++.+. +.++++ .+.+.+..++++++
T Consensus 283 --~t~gK~lg-gG~Piga~~~~~e-i~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~-~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 283 --TTLGKYIG-GGMSFGAFGGRAD-VMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA-AGALAERGEALRAR 357 (454)
T ss_dssp --EEEEGGGG-TTSSCEEEEECHH-HHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHH
T ss_pred --EEeccccC-CCCcceeeeeHHH-HHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHH
Confidence 27789998 8999999999554 4433321 1111 12355555554444 445444 22233333444433
Q ss_pred HHHHHHHHhhCCCeEecCCceEEEEeeccch-----hhccCch--HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 333 HHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-----LKEKTLE--GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 333 ~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~-----~~~~~~~--~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
.+.+ +++.++...-..-|+++.+.+... ......+ ....++..++++ ||.+.|. +.+.++.
T Consensus 358 L~~l---~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~ 425 (454)
T 4ao9_A 358 LNAL---CANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSL 425 (454)
T ss_dssp HHHH---HHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCT
T ss_pred HHHH---HhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeC
Confidence 2222 233343222222345555555321 1111111 122455666654 9998764 2344454
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 406 ANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
. ++++++|+++++|++++.++..
T Consensus 426 ~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 426 P-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp T-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred C-CCHHHHHHHHHHHHHHHHhccc
Confidence 4 5999999999999999987543
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.61 E-value=2.6e-13 Score=136.35 Aligned_cols=316 Identities=15% Similarity=0.158 Sum_probs=189.5
Q ss_pred HHHHHHH-HHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 90 EFRQAVA-KFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP----GDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 90 ~lr~aia-~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~----Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
.|-+.++ +|+.+. | ++ .....++++|+|.++.+++.+.+++ ||.|+++.-++-.+...+... |++++.++
T Consensus 116 ~ltn~l~ld~L~~~-G--~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~-Gl~Pv~V~ 190 (501)
T 3hl2_A 116 KITNSLVLDIIKLA-G--VH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA-GFEPVVIE 190 (501)
T ss_dssp HHHHHHHHHHHHHT-T--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHc-C--CC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc-CCeEEEEe
Confidence 4444444 455543 5 22 2346899999997777776666553 499999999999999998887 99988887
Q ss_pred cc-CCCCcccCHHHHHHHHHHHHHhCC-CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 165 CD-ISNNFKITREALEAAYERAQEASI-NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 165 ~~-~~~~f~i~~~~l~~~~~~~~~~~~-~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
.. ..+.+.+|++++++++++. +. .+.+|+.+.|.|-.|.+-+ +++|+++|++||+++++||+|....
T Consensus 191 p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~----- 259 (501)
T 3hl2_A 191 NVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQS----- 259 (501)
T ss_dssp EEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTC-----
T ss_pred eeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhh-----
Confidence 52 1236889999999999875 22 3334444444454445556 9999999999999999999997532
Q ss_pred cccHHHhhhhccCCCC-cEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 243 FTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~-~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.....+..+. ...+ ...++.|.+|.+-+| +..|.+...++.+.+.+....+....++++..+...++.-+ .+.
T Consensus 260 -~~~~~lp~sA-~~~GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG---r~G 333 (501)
T 3hl2_A 260 -SKCMHLIQQG-ARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG---SNG 333 (501)
T ss_dssp -HHHHHHHHHH-HHHSCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH---HHH
T ss_pred -hhhhhhHHHH-HhcCCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---HHH
Confidence 1111111100 0112 446788999998544 44456667676655555444332223444444555555433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe---E-EeCCC-
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV----GINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL---N-VSPGS- 391 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI---~-v~pg~- 391 (477)
+++..++..+..++|.+.|+++ |-+++... ...-+-+.+...... ....-.++-..|.. .+| . |.+|.
T Consensus 334 y~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~-~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 334 YKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH-RDKAVTQLGSMLFT-RQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT-TSCHHHHHHHHHHH-TTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc-ccccHHHHHHHHHh-cCCCcceeecCCCc
Confidence 3555555566667777777653 54554332 223445566543111 11112233333433 344 3 45555
Q ss_pred ---------CCCCCC----CCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 392 ---------SFQCTE----PGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 392 ---------~f~~~~----~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.|+... -.++=+.-+- ++.++++.++++|.+++.+.+.
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 454321 2366554432 5999999999999999976543
No 232
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.56 E-value=7.4e-13 Score=132.55 Aligned_cols=304 Identities=15% Similarity=0.151 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH-----hh--hC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD----RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL-----SW--RT 156 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~----~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~-----~~--~~ 156 (477)
..++.....+...+.+| .+.. ||-.-+| +.|+..++.+|++|||+|+..+....++..-- .. ..
T Consensus 98 vD~iE~la~~rak~lF~----a~~A~w~VNVQP~SG-s~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~s 172 (490)
T 3ou5_A 98 VDEIELLCQRRALEAFD----LDPAQWGVNVQPYSG-SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 172 (490)
T ss_dssp HHHHHHHHHHHHHHHTT----CCTTTEEEECCCSSH-HHHHHHHHHHHCC-CCCEECBC---------------------
T ss_pred HHHHHHHHHHHHHHHhC----CCccccCCCCCcCCH-HHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccc
Confidence 44555555555666655 3444 4555555 67999999999999999999998877653211 00 11
Q ss_pred C--cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 157 G--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 157 g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
| .+.++++++. .+..||.+++++..++. ++|+|+...-.+| ..++ .+++.++|.+.|.+|++|-++.
T Consensus 173 g~~~~~~~Y~vd~-~t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHi 241 (490)
T 3ou5_A 173 SIFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHI 241 (490)
T ss_dssp -------CBCEET-TTTEECHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred cccccccccccCC-CCCcccHHHHHHHHhhc-----CCCeEEECCccCc--cccC---HHHHHHHHhhcccEEEechhhh
Confidence 2 2455666664 35689999999988876 8998776533333 3455 6667777779999999999985
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhcccCCC
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSFGLV 300 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~~~v 300 (477)
.....+.-+.+.... ..++..|.+|+| +|-|-|.|++.++ .+.+.+.+.--.+..
T Consensus 242 aGLVA~g~~psP~~~---------ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~q 310 (490)
T 3ou5_A 242 SGLVAAKVIPSPFKH---------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310 (490)
T ss_dssp HHHHHTTSSCCGGGT---------CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTC
T ss_pred hhhhcccccCCcccc---------ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCcccc
Confidence 332222222222211 236788999998 8999999998653 233333332222222
Q ss_pred -chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHH
Q 011801 301 -SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 301 -s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
++..-.+++.+..-.+......++..+++.++.+.|.+.|.+.|+++.... ..-.++++++..- +.. ..+..
T Consensus 311 ggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g----~tG--~~ae~ 384 (490)
T 3ou5_A 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG----LDG--ARAER 384 (490)
T ss_dssp SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT----CCH--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccC----CCH--HHHHH
Confidence 222222222222211111223456677788899999999999999887422 2346778887521 111 24567
Q ss_pred HHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~ 425 (477)
+|++.||.+. |+.. .+..+..+||+... +.+++++++.+-|.+++.
T Consensus 385 ~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 385 VLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 7888899764 5542 22235679999843 468999999999988875
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.55 E-value=4.4e-13 Score=137.87 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=195.6
Q ss_pred CCCCCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccccc-CCCCCcHHHHHHHHHHHhcccCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIF-QDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
..+.+.+..||+..+ .+.++ .+.+.+++++..+ .+.....+ .+.....+|-+.+++....
T Consensus 58 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~----------~~~~~~~~~~~~~~~~~lae~L~~~~p~----- 122 (456)
T 4atq_A 58 IRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAA----------HFTHTCFMVTPYEGYVAVTEQLNRLTPG----- 122 (456)
T ss_dssp EEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH----------HCSCCTTTTSCCHHHHHHHHHHHHHSSC-----
T ss_pred EEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHh----------hccCcccCccCcHHHHHHHHHHHHhCCC-----
Confidence 334556678998554 45553 4666666654211 00011111 1122223344444443310
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccC----
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDI---- 167 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~---- 167 (477)
-..+++++++++++|++.+++.- ......|+...-+|++....+...++ ..+..+|...
T Consensus 123 --~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 200 (456)
T 4atq_A 123 --DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFRE 200 (456)
T ss_dssp --SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGC
T ss_pred --CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceeccccccccc
Confidence 12457999999999999998763 22347888888888875432211111 1234444321
Q ss_pred CCCcccCHHHHHHHHHHHHH--hCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 168 SNNFKITREALEAAYERAQE--ASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~--~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.....-+.+.+++.++...+ .+.++.+|++.--..-.|.+ .+++-+++|.++|++||+++|.||+..++.-.+..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a 280 (456)
T 4atq_A 201 ENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFA 280 (456)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccccc
Confidence 01111134555555443322 13367776665334455654 5667899999999999999999999998644444332
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcC---ChhhH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLS---DDEFV 318 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~---~~~~~ 318 (477)
. +. .+..+| ++ +++|.+| .|+.+|.+++.++ +.+..... .+|+ .++++..++.+.|+ +.++
T Consensus 281 ~--e~---~gv~PD--iv--t~gK~lg-gg~P~~av~~~~~-i~~~~~~~~~~~Tf~-gnpla~aaala~L~~i~~~~l- 347 (456)
T 4atq_A 281 V--DH---EGVVPD--II--TMAKGIA-GGLPLSAITGRAD-LLDAVHPGGLGGTYG-GNPVACAAALAAIDTMEQHDL- 347 (456)
T ss_dssp G--GG---TTCCCS--EE--EECGGGG-TTSSCEEEEEEHH-HHTTSCTTSSCCSSS-SCHHHHHHHHHHHHHHHHTTH-
T ss_pred c--cc---cCCCCc--hh--hhhhccc-CcCCceeeEecHH-HHhcccccCCCCCCC-CChHHHHhhHHHHHHHhhccH-
Confidence 1 11 122444 33 6789998 9999999999554 33322211 2222 45666666555554 2232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhh-ccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLK-EKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~-~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
.+..++..+++.++.+.+.+.+...+-++. -..-|+++-+++..... ....+....++..+++ +||++.++..+
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~-- 424 (456)
T 4atq_A 348 NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY-- 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC--
Confidence 222333334444443333333221111111 12346777787753211 1111222245556654 59998875332
Q ss_pred CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+|+..... +++++++++++|.++++.
T Consensus 425 --~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 425 --GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp --SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 35799988653 999999999999999875
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.52 E-value=2.3e-12 Score=133.02 Aligned_cols=347 Identities=13% Similarity=0.185 Sum_probs=187.2
Q ss_pred CCCCcccccccc--ccccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCC-cHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGL--AENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG-LPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~--~~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+.. +.+.+ +.+.+.+++++. ...+..|....+ ..+....+|+.+.+..+
T Consensus 63 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q-------------~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p---- 125 (473)
T 4e3q_A 63 DVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQ-------------YERFPGYHAFFGRMSDQTVMLSEKLVEVSP---- 125 (473)
T ss_dssp ETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHH-------------HHHCCCCCCCTTEEEHHHHHHHHHHHHHSS----
T ss_pred eCCCCEEEEcccCHHHhhccCCCHHHHHHHHHH-------------HHhcccccccccccCHHHHHHHHHHHhhCC----
Confidence 445566788744 34544 346666666552 112222222211 23444455665554322
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCC-----------cEEEEEeccCC-
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTG-----------VQIVPVHCDIS- 168 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g-----------~~~~~v~~~~~- 168 (477)
.+-++|++++++++|++.+++... .++ .+|+...-+|++........+| .....++....
T Consensus 126 ~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~ 205 (473)
T 4e3q_A 126 FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYW 205 (473)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHH
T ss_pred CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCccc
Confidence 345689999999999999997632 233 5688888888774322211111 11222322110
Q ss_pred --CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 169 --NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 169 --~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
+...-. .+++++.+.+. ...++.+|++.--..-.|.+ .+++-+++|.++|+++|+++|.||+..++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 206 RYGEEGETEEQFVARLARELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 283 (473)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCC
Confidence 000111 23344444332 12245555554334556765 456679999999999999999999999864
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH---Hhccc-----CCCchHHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR---KMSSF-----GLVSSQTQYLL 308 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~---~~~~~-----~~vs~~~q~~~ 308 (477)
-.+..+.. +. .+..+| ++ +++|.+| .| +.+|.+++.++....... ....+ ...++++..++
T Consensus 284 RtG~~fa~--e~---~gv~PD--i~--t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaa 353 (473)
T 4e3q_A 284 RTGNTWGC--VT---YDFTPD--AI--ISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIA 353 (473)
T ss_dssp TTSSSCHH--HH---TTCCCS--EE--EECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHH
T ss_pred cccchhHH--Hh---cCCCCC--hH--Hhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhh
Confidence 44443321 11 122344 22 6789998 66 999999996554332221 11111 12455555555
Q ss_pred HHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhcc-Cch----HHHHHH
Q 011801 309 ASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEK-TLE----GEIALW 376 (477)
Q Consensus 309 ~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~-~~~----~e~~l~ 376 (477)
.+.|+ +.++ .++.++.-++|.++|+++ .+.-.. .-|+++-+++....... .++ ....+.
T Consensus 354 la~L~~i~~~~l--------~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~ 424 (473)
T 4e3q_A 354 LKAIDVVMNEGL--------AENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIA 424 (473)
T ss_dssp HHHHHHHHHSSH--------HHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred hhhhhhhccccH--------HHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHH
Confidence 55553 2222 122223333344444332 232122 24567777764321111 111 112345
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..++ ++||+++|.. +.+|++... ++++++++++++|.+++++
T Consensus 425 ~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 425 NTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555 5699998742 468988765 4999999999999999876
No 235
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.50 E-value=3.9e-13 Score=147.77 Aligned_cols=231 Identities=13% Similarity=0.119 Sum_probs=132.1
Q ss_pred HHHHHHHHHHH--HhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 176 EALEAAYERAQ--EASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 176 ~~l~~~~~~~~--~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
++|++.+++.. ....++.+|++..- .+..|.. .+.+.+++|.++|++||+++|+||++.++...+..|. .+..
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa--~e~~- 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETT--TELL- 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSST--HHHH-
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchh--hHhc-
Confidence 45555554311 11235666555432 5777865 4788899999999999999999999998655665542 1221
Q ss_pred hccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhcC---ChhhHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLS---DDEFVD 319 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L~---~~~~~~ 319 (477)
+..+| + .+|||.+| .| +++|+++++++ +.+.+... ......++++++++.+.|+ +.++.
T Consensus 654 --gv~PD--i--itlsK~L~-gG~~Plgav~~~~~-i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~- 724 (831)
T 4a0g_A 654 --GCKPD--I--ACFAKLLT-GGMVPLAVTLATDA-VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN- 724 (831)
T ss_dssp --SSCCS--E--EEECGGGG-TTSSCCEEEEECHH-HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC-
T ss_pred --CCCCc--E--EEEecccc-cCccCcEEEEECHH-HHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH-
Confidence 22344 2 27999998 68 79999999554 44433211 1112245666666655553 22221
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccC--chHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 320 NFLVETSKRLAKR-HHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKT--LEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 320 ~~~~~~~~~l~~r-~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~--~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.+.+..+++++. .+.+.+.+.+.. +.... ..|+++.+++........ .....++++.++ +.||.++|+
T Consensus 725 ~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~----- 797 (831)
T 4a0g_A 725 HNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL----- 797 (831)
T ss_dssp TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-----
Confidence 1111111111110 112344455543 33233 345788888753211111 112234566665 569999875
Q ss_pred CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+.+|++... .+++++++++++|.+++++.
T Consensus 798 --g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 --GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp --TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2579998644 49999999999999998764
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.48 E-value=3.2e-11 Score=122.53 Aligned_cols=318 Identities=14% Similarity=0.091 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP----GDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~----Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
...+.+.+..++.+..|.+ +....++++|+|++...++...+++ ++.|+++.-++..+..++... |++.+.+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp---~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~-Gl~p~~v 171 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCC---CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc-CCeeEEE
Confidence 4456677777776665621 2334688889884444444443333 899999999999999998887 9988777
Q ss_pred eccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 164 HCDI-SNNFKITREALEAAYERAQEASINIKGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+... +..+.+|+++|++++++... +.+++++++|+ +.+|.+-+ +++|+++|++||+++++|++|... +.
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~-~~-- 242 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ-SS-- 242 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT-CH--
T ss_pred EeeecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchh-hh--
Confidence 6421 24688999999999987521 24466666674 45677777 999999999999999999999753 11
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
+ ...+..+.-.......++.|.+|.+. .....+++...++...............++++..+...++..+ .+-
T Consensus 243 -~--~~~l~~~a~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G---~~g 315 (450)
T 3bc8_A 243 -K--CMHLIQQGARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSG 315 (450)
T ss_dssp -H--HHHHHHHHHHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHH
T ss_pred -h--hHhHHHHHhcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---HHH
Confidence 1 11111100000123357789999986 5556778877665554444333211122344444444444322 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----CCCeEecCCc-eEEEEeeccchhhccCchHHHHHHHHHHHhcC---eEEeC----
Q 011801 322 LVETSKRLAKRHHNFTKGLEQ----VGINCLKSNA-GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVK---LNVSP---- 389 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~-g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~g---I~v~p---- 389 (477)
+.+..++..+..+++.+.+++ .|+.+..... +.-..+.++........ +...+.-.+. ..| ..+.+
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-D~tkl~i~~~-~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK-AVTQLGSMLF-TRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSC-HHHHHHHHHH-HTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccC-CCceeEEEec-CCCCccceeeecccc
Confidence 233333333344445554433 3665553221 10111233332111111 1223333332 223 33321
Q ss_pred ----CC---CCC----CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 390 ----GS---SFQ----CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 390 ----g~---~f~----~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
|. .|+ .....++=+.++- .+++++++++++|+++.++.
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 01 111 1123455444432 48999999999999987654
No 237
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=90.48 E-value=1.9 Score=40.38 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=68.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
.-+++|.|+++-=..+...|++.|-.|++..-.-......++.. |.+...+.+|-. |.+++++.+++..++-.+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-GGGAVGIQADSA-----NLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 34666666665555666788899999888765544444555555 777788887743 678888888877666567
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.. +++|. .++.+. -++.++++++.+.
T Consensus 104 iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 104 IDV-LFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EEE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CCE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence 885 44554 344443 3577888888775
No 238
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=87.58 E-value=3.5 Score=37.57 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|.+.|-.|++..-.-.......... +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 79 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-GKKARAIAADIS-----DPGSVKALFAEIQALTG 79 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEECCCCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHHHHHCC
Confidence 345777776665555666778888988888765544444444444 666777776642 57888888877665555
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+++.+--..+.+. -.+.++++++.+.
T Consensus 80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6776544332333332 3567777777663
No 239
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=86.39 E-value=6.1 Score=36.45 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=68.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++-..+++|.|+.+-=..+...|++.|-.|++.+-.-....+ .+... |.++..+.+|-. |.+++++++++.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~ 80 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVT-----DELAIEAAFSKL 80 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCC-----CHHHHHHHHHHH
Confidence 333456666666655556667788999999887654332222 23334 778888887743 578899999888
Q ss_pred HHhCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++-.++.. +++|. .++.+. -++.++++++.+.
T Consensus 81 ~~~~G~iDi-LVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 81 DAEGIHVDI-LINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HHTTCCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHCCCCcE-EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 777778885 55554 333333 3578888888774
No 240
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=86.35 E-value=5.7 Score=36.89 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-GSKAFGVRVDVS-----SAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEecCC-----CHHHHHHHHHHHHHHcC
Confidence 345677776665555666778888988887765443333444434 666777777642 57888888877665555
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+++.+--..+.+. ..+.++++++.+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6775444322233332 3567777776653
No 241
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=85.59 E-value=6.7 Score=35.83 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+...
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-GPAAYAVQMDVT-----RQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCCceEEEeeCC-----CHHHHHHHHHHHHHHcC
Confidence 345777777665555666778888988887765443333444434 555666676632 57888888887766666
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++..|+.+-...+.+. -.+.+++++..+
T Consensus 82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (259)
T 4e6p_A 82 GLDILVNNAALFDLAPIVEITRESYEKLFA 111 (259)
T ss_dssp SCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 7886554332222222 346677776655
No 242
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=85.41 E-value=5.4 Score=36.41 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-GAAVRFRNADVT-----NEADATAALAFAKQEFG 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-------------CEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-CCceEEEEccCC-----CHHHHHHHHHHHHHHcC
Confidence 345677776665555666778888988887665444333333333 556666666532 57888888877665555
Q ss_pred CeeEEEEeCC-CCCccc------CCCHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLGT------TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG~------~~~~~~l~~l~~ 218 (477)
++.+++ +|. ..+.+. ..+.+++++..+
T Consensus 81 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T 3tpc_A 81 HVHGLV-NCAGTAPGEKILGRSGPHALDSFARTVA 114 (257)
T ss_dssp CCCEEE-ECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCccccccccCCHHHHHHHHH
Confidence 677544 444 222222 245677776655
No 243
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=84.85 E-value=7 Score=35.68 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.......+.. +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-GPRVHALRSDIA-----DLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCcceEEEccCC-----CHHHHHHHHHHHHHHhC
Confidence 446777777666556666778888988887765444344434434 666777777643 57778877776655555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
++..++ +|.. .+.+. -.+.+++++..+.
T Consensus 82 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 82 AIDLLH-INAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp SEEEEE-ECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 777544 4442 22222 2466777776653
No 244
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=84.66 E-value=5.1 Score=37.25 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=60.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.+
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-GCGAAACRVDVS-----DEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CSSCEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCcceEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 34666666554445556678888988887765444344444444 656666666642 578888888776655557
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.+++.+--..+.+. -.+.++++++.+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 776554332233332 3567777776653
No 245
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=84.32 E-value=6 Score=35.66 Aligned_cols=101 Identities=13% Similarity=0.247 Sum_probs=59.1
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|+|+.+.=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+...++
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~i 78 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-GNAVIGIVADLA-----HHEDVDVAFAAAVEWGGLP 78 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-GGGEEEEECCTT-----SHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-cCCceEEECCCC-----CHHHHHHHHHHHHHhcCCC
Confidence 4677776665555566778888988887765444333333333 335666666642 5788888887766555577
Q ss_pred eEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.+++.+--..+.+. ..+.++++++.+.
T Consensus 79 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l6e_A 79 ELVLHCAGTGEFGPVGVYTAEQIRRVMES 107 (235)
T ss_dssp SEEEEECCCC------CCCHHHHHHHHHH
T ss_pred cEEEECCCCCCCCChHhCCHHHHHHHHHH
Confidence 76554433333322 3466777776663
No 246
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=83.83 E-value=6.3 Score=36.31 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|-.|++..-.-.......+.. |.++..+.+|-. |.+++++++++..+...
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-GKDVFVFSANLS-----DRKSIKQLAEVAEREME 100 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CSSEEEEECCTT-----SHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEeecC-----CHHHHHHHHHHHHHHcC
Confidence 345677766655445666778888988887765443344444444 667777777643 57888888877665555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+ +|.. .+.+. ..+.++++++.+
T Consensus 101 ~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 101 GIDILV-NNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp SCCEEE-ECCCCC-----CCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 777654 4442 22222 244555665554
No 247
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=83.76 E-value=6.2 Score=36.21 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=64.7
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|.|+++-=..+...|++.|-.|++.+-.-.......+ . +.++..+.+|-. |.+++++.+++..++-.++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~-~~~~~~~~~Dv~-----~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-E-RPNLFYFHGDVA-----DPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-T-CTTEEEEECCTT-----SHHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-h-cCCEEEEEecCC-----CHHHHHHHHHHHHHHcCCC
Confidence 47777777766667778888999998887654332222222 3 556777777643 5788888888776665578
Q ss_pred eEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.. +++|. .++.+. -++.++++++.+.
T Consensus 77 Di-LVNNAG~~~~~~~~~~~~e~~~~~~~v 105 (247)
T 3ged_A 77 DV-LVNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp CE-EEECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred CE-EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 75 45554 333333 3577888888774
No 248
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=83.70 E-value=5.1 Score=37.14 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc------------cc---hHHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY------------AA---FDRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y------------~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++.+-.. .. ....+... |.++..+.+|-. |.
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~ 83 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-GRKAYTAEVDVR-----DR 83 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-TSCEEEEECCTT-----CH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-CCceEEEEccCC-----CH
Confidence 34577777766555566677888898887754321 01 11122223 667777777643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+++++++++..+...++.+|+.+--..+.+...+.+++++..+
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~ 126 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhh
Confidence 8888888776655557775444332333344466677776655
No 249
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=83.26 E-value=9.3 Score=34.76 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
....+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+..
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-GDAALAVAADIS-----KEADVDAAVEAALSKF 81 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-CCceEEEEecCC-----CHHHHHHHHHHHHHhc
Confidence 3445777777665445566777788988887765544444444444 666777777643 5778888887765555
Q ss_pred CCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 190 INIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 190 ~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.++..++.+-.. .+.+ ...+.+++++..+.
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGV 114 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 567765443221 2122 22467777766553
No 250
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=82.99 E-value=17 Score=33.73 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=63.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc----------chHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA----------AFDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~----------~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
+...+++|.|+.+.=..+...|++.|..|++..-.-. .....+... |.++..+.+|-. |.++++
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~ 81 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA-GGQALPIVGDIR-----DGDAVA 81 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH-TSEEEEEECCTT-----SHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHH
Confidence 3445777777665555666778888988877654322 112233444 778888887643 578888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+++++..+...++.+++.+--..+.+. -.+.++++++.+.
T Consensus 82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 888776655557776554332233332 3567777776653
No 251
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=82.59 E-value=14 Score=33.58 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.......+.. +.++..+.+|-. |.+++++++++..+...
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-GNNCVFAPADVT-----SEKDVQTALALAKGKFG 85 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHHHHHCC
Confidence 345777766655445666777788888777654433344333433 555666666532 57788888776655444
Q ss_pred CeeEEEEeCCCCCccc--------CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--------TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--------~~~~~~l~~l~~ 218 (477)
++.+|+.+--....+. ..+.+++++..+
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLD 121 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHH
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHH
Confidence 6776554322222221 246666665554
No 252
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=82.44 E-value=8.3 Score=34.97 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|.+.|..|++..-.-.......... +.+...+.+|-. |.+++++++++..++-.
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-GDNGKGMALNVT-----NPESIEAVLKAITDEFG 82 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cccceEEEEeCC-----CHHHHHHHHHHHHHHcC
Confidence 345677766655445566778888988887654433333333333 444555666532 57888888877665555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++.+++ +|.. .+.+. ..+.+++++..+
T Consensus 83 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 112 (248)
T 3op4_A 83 GVDILV-NNAGITRDNLLMRMKEEEWSDIME 112 (248)
T ss_dssp CCSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 777544 4442 22222 346777777665
No 253
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=82.24 E-value=13 Score=34.13 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=62.9
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
++..-+++|.|+++-=..+...|++.|-.|++..-.-.. ....+... |.+...+.+|-. +.+++++++++..
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR-QPRATYLPVELQ-----DDAQCRDAVAQTI 78 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc-CCCEEEEEeecC-----CHHHHHHHHHHHH
Confidence 333445666665544456667788889877776533222 22223334 667777777643 5788888887766
Q ss_pred HhCCCeeEEEEeCCC--CCcccCCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS--NPLGTTLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~--NPtG~~~~~~~l~~l~~~ 219 (477)
++-.++.. +++|.. .+...-.+.++++++.+.
T Consensus 79 ~~~G~iDi-LVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 79 ATFGRLDG-LVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHHSCCCE-EEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHhCCCCE-EEECCCCCCCCCccCCHHHHHHHHHH
Confidence 65557875 555552 233445677888877764
No 254
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=82.23 E-value=13 Score=33.53 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=58.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
..+++|.|+...=..+...|.+.|..|++..-.- ......++.. |.++..+.+|-. |.+++++++++..+.-.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-GRRVLTVKCDVS-----QPGDVEAFGKQVISTFG 81 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-CCcEEEEEeecC-----CHHHHHHHHHHHHHHcC
Confidence 4577776665555566677888888877754332 2222233333 666767776642 57778887776655444
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+|+.+-...+.+. ..+.++++++.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6776544322222222 3466677666653
No 255
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=82.16 E-value=11 Score=34.73 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++.+-.-.......... |.++..+.+|-. |.+.+++++++..+.-.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-GRGAVHHVVDLT-----NEVSVRALIDFTIDTFG 84 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-CCCeEEEECCCC-----CHHHHHHHHHHHHHHcC
Confidence 345777777665555666778888988887765554454444444 555666666532 57788888876655545
Q ss_pred CeeEEEEeCCC-C-C-cc--cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPS-N-P-LG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~-N-P-tG--~~~~~~~l~~l~~~ 219 (477)
++..++ +|.. . + .+ .-++.+++++..+.
T Consensus 85 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 85 RLDIVD-NNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp CCCEEE-ECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 677544 4442 2 2 21 13567777776653
No 256
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=82.12 E-value=13 Score=33.90 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=62.2
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc---c---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA---A---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~---~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
++...+++|.|+.+.=..+...|++.|..|++..-.-. . ....++.. |.++..+.+|-. |.+++++++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~ 82 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-GAKVALYQSDLS-----NEEEVAKLF 82 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-TCEEEEEECCCC-----SHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHH
Confidence 33446777777666556667788899988887532211 1 11223333 778888887743 578888888
Q ss_pred HHHHHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 183 ERAQEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++..+...++.+++ +|.. .+.+. -.+.++++++.+
T Consensus 83 ~~~~~~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 120 (262)
T 3ksu_A 83 DFAEKEFGKVDIAI-NTVGKVLKKPIVETSEAEFDAMDT 120 (262)
T ss_dssp HHHHHHHCSEEEEE-ECCCCCCSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 77665555777644 4442 22232 346677776665
No 257
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=82.11 E-value=9.1 Score=35.32 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.++++++.. +.-.
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~-~~~~ 102 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-GNRAEFVSTNVT-----SEDSVLAAIEAA-NQLG 102 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHH-TTSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHH-HHhC
Confidence 345777776665555666778888988887765443333444444 666777777642 578888888766 3334
Q ss_pred CeeEEEEeCC-CCCcc-------cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLG-------TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG-------~~~~~~~l~~l~~~ 219 (477)
++..++.++. ..+.+ ...+.+++++..+.
T Consensus 103 ~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T 3ppi_A 103 RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139 (281)
T ss_dssp EEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHH
T ss_pred CCCeEEEccCcccccccccccccccCCHHHHHHHHHH
Confidence 6666665523 22222 24666667666653
No 258
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=81.80 E-value=8.7 Score=35.21 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-......+... ++.. +.+|-. |.+.+++++++..+...
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~--~~~Dv~-----~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-GAVA--LYGDFS-----CETGIMAFIDLLKTQTS 98 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-TCEE--EECCTT-----SHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-CCeE--EECCCC-----CHHHHHHHHHHHHHhcC
Confidence 445777777665555666778888887777654433333444444 6544 444422 57888888877766656
Q ss_pred CeeEEEEeCCC-C-CcccCCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-N-PLGTTLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-N-PtG~~~~~~~l~~l~~ 218 (477)
++.+|+ +|.. . +.....+.++++++.+
T Consensus 99 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 99 SLRAVV-HNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp CCSEEE-ECCCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEE-ECCCccCCCCCCCCHHHHHHHHH
Confidence 777654 4442 2 2123344555555554
No 259
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=81.49 E-value=23 Score=32.05 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|+|+.+.=..+...|.+.|..|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA-GGRIVARSLDAR-----NEDEVTAFLNAADA 80 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECcCC-----CHHHHHHHHHHHHh
Confidence 3457777776655556667788889888877654333322 23333 678888887743 57888888887766
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
. .++..++.+--..+.+. -.+.+++++..+.
T Consensus 81 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 81 H-APLEVTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp H-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred h-CCceEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6 67876544332233232 3566677766653
No 260
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=81.31 E-value=17 Score=33.98 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=61.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH---hhhCC-cEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL---SWRTG-VQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~---~~~~g-~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-....... ... + .++..+.+|-. |.+.+++++++..
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~-----d~~~v~~~~~~~~ 114 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL-GAGNVIGVRLDVS-----DPGSCADAARTVV 114 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS-SSSCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-CCCcEEEEEEeCC-----CHHHHHHHHHHHH
Confidence 345666666555445566778888988887765544333322 222 3 46677777642 5788888887766
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.-.++.+|+.+--..+.+. -++.++++++.+.
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55557776543322233332 3577777777664
No 261
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=81.25 E-value=9.4 Score=35.19 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=59.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.+++++++..+...+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~~g~ 79 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-PDRAEAISLDVT-----DGERIDVVAADVLARYGR 79 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-TTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-cCCceEEEeeCC-----CHHHHHHHHHHHHHhCCC
Confidence 34666666554444556677888988887765544444444433 555666666532 577888877766555556
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+-...+.+. ..+.++++++.+
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (281)
T 3m1a_A 80 VDVLVNNAGRTQVGAFEETTERELRDLFE 108 (281)
T ss_dssp CSEEEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 776554322222222 356666766655
No 262
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=80.66 E-value=15 Score=33.80 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=66.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.-+++|.|+++-=..+...|+..|-.|++.+-.-.... ..++.. |.++..+.+|-. |.+++++.+++..++
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVS-----KKKDVEEFVRRTFET 81 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 44666666665555666778889988888664433222 223334 888888888743 578888888877666
Q ss_pred CCCeeEEEEeCCC--CCccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS--NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~--NPtG~--~~~~~~l~~l~~~ 219 (477)
-.++.. +++|.. .+.+. -++.++++++.+.
T Consensus 82 ~G~iDi-LVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 82 YSRIDV-LCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp HSCCCE-EEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred cCCCCE-EEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 567875 556652 33342 4688889888875
No 263
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=80.65 E-value=17 Score=33.45 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----------hHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----------FDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----------~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
+...+++|.|+.+.=..+...|.+.|..|++..-.-.. ....+... |.++..+.+|-. |.+.++
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~ 78 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA-GGQGLALKCDIR-----EEDQVR 78 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH-TSEEEEEECCTT-----CHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc-CCeEEEEeCCCC-----CHHHHH
Confidence 34457777776655556667788889888776533221 12223334 778888887743 578888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHH
Q 011801 180 AAYERAQEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~ 218 (477)
+++++..+...++..++ +|.. ...+ ...+.++++++.+
T Consensus 79 ~~~~~~~~~~g~iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~ 119 (274)
T 3e03_A 79 AAVAATVDTFGGIDILV-NNASAIWLRGTLDTPMKRFDLMQQ 119 (274)
T ss_dssp HHHHHHHHHHSCCCEEE-ECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEE-ECCCcccCCCcccCCHHHHHHHHh
Confidence 88877665555777544 4442 2222 2356677776665
No 264
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=80.55 E-value=14 Score=34.49 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC------------ccch---HHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY------------YAAF---DRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~------------y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++.+-. -... ...++.. |.++..+.+|-. |.
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~ 101 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-GRRIIASQVDVR-----DF 101 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-CCceEEEECCCC-----CH
Confidence 3457777766655556667788889888775422 1111 1222333 677888887643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc---CCCHHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPS-NPLGT---TLDRDTLKSLVSF 219 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~---~~~~~~l~~l~~~ 219 (477)
+++++++++..+.-.++.+++ +|.. .+.+. -++.+++++..+.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVL-ANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEE-ECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEE-ECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 888888877665545677544 4442 22222 3577777777663
No 265
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=80.43 E-value=15 Score=33.92 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=61.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh---hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS---WRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~---~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-........ ...|.++..+.+|-. |.+++++++++..+.
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR-----APPAVMAAVDQALKE 102 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 457777776655556667788899888876554333222221 112667777777643 578888888776655
Q ss_pred CCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
..++.+|+ +|.. .+.+. .++.++++++.+.
T Consensus 103 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 103 FGRIDILI-NCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp HSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEE-ECCcCCCCCCcccCCHHHHHHHHHH
Confidence 55777544 4442 22222 3567777776663
No 266
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=80.19 E-value=23 Score=33.98 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----------hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----------FDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----------~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.. ....++.. |.++..+.+|-. |.+.+++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~-g~~~~~~~~Dv~-----d~~~v~~ 118 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV-GGKALPCIVDVR-----DEQQISA 118 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc-CCeEEEEEccCC-----CHHHHHH
Confidence 3456666666554455667788889887776433221 22333444 778888887643 5788888
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 181 AYERAQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
++++..+.-.++.+|+.+--....+ ...+.++++++.+
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~ 158 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMN 158 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 8887766545777544432222222 2356667766655
No 267
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=80.04 E-value=14 Score=33.41 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=57.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.++++++++...+...+
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-GERSMFVRHDVS-----SEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEEECCCTT-----CHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCceEEEEccCC-----CHHHHHHHHHHHHHHcCC
Confidence 35666666554445566677788988877654433233333333 555666666532 577888887766554456
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+-...+.+. ..+.+++++..+
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLK 109 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 776544322222232 246666666655
No 268
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=79.80 E-value=9.7 Score=35.26 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=60.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-----------c-----cchH---HHHhhhCCcEEEEEeccCCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-----------Y-----AAFD---RDLSWRTGVQIVPVHCDISNN 170 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-----------y-----~~~~---~~~~~~~g~~~~~v~~~~~~~ 170 (477)
....+++|.|+.+.=..+...|++.|..|++.+-. + .... ..+... +.++..+.+|-.
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-- 86 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH-NRRIVTAEVDVR-- 86 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT-TCCEEEEECCTT--
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc-CCceEEEEcCCC--
Confidence 34457777776655556667788889888775322 1 0111 122223 667777777643
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc---CCCHHHHHHHHHH
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPS-NPLGT---TLDRDTLKSLVSF 219 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~---~~~~~~l~~l~~~ 219 (477)
|.+.+++++++..+...++.++ ++|.. .+.+. ..+.++++++.+.
T Consensus 87 ---~~~~v~~~~~~~~~~~g~id~l-v~nAg~~~~~~~~~~~~~~~~~~~~~~ 135 (286)
T 3uve_A 87 ---DYDALKAAVDSGVEQLGRLDII-VANAGIGNGGDTLDKTSEEDWTEMIDI 135 (286)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCCEE-EECCCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhCCCCEE-EECCcccCCCCccccCCHHHHHHHHHH
Confidence 5788888887766554567754 44442 22222 3467777776653
No 269
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=79.67 E-value=15 Score=34.01 Aligned_cols=103 Identities=9% Similarity=0.098 Sum_probs=60.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc-chHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA-AFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~-~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++..-.-. .... .+....+.++..+.+|-. |.+++++++++..+
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 100 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMT-----KPSEIADMMAMVAD 100 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCC-----CHHHHHHHHHHHHH
Confidence 45777777665555666778888988887654222 1111 122112556777776642 57888888887766
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.-.++.+|+.+--..+.+. -.+.++++++.+.
T Consensus 101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 134 (281)
T 3v2h_A 101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAV 134 (281)
T ss_dssp HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6557776443322233332 3467777776663
No 270
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=79.04 E-value=10 Score=34.93 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
....+++|.|+.+.=..+...|++.|..|++..-. -.. ....++.. |.++..+.+|-. |.+.+++++++.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----d~~~v~~~~~~~ 100 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-GGEAFAVKADVS-----QESEVEALFAAV 100 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHH
Confidence 33456666666554455667788889888765332 111 12223333 667777777643 578888888776
Q ss_pred HHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
.+...++.+|+.+--..+.+ ...+.++++++.+.
T Consensus 101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (269)
T 4dmm_A 101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDL 136 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 65555777644432222222 23567777776653
No 271
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=78.92 E-value=11 Score=34.76 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-------c-----cch---HHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-------Y-----AAF---DRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-------y-----~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++..-. | ... ...+... |.++..+.+|-. |.
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~ 86 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-GSRIVARQADVR-----DR 86 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-TCCEEEEECCTT-----CH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-CCeEEEEeCCCC-----CH
Confidence 3457777766655556667788889888775422 1 111 1122333 667777777643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+.+++++++..+...++.+++.+--..+.+. +.++++++.+
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~ 127 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVID 127 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHH
Confidence 8888888776655557775443322223222 4566666655
No 272
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=78.67 E-value=12 Score=34.59 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=59.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC------------c-cchH---HHHhhhCCcEEEEEeccCCCCcccC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY------------Y-AAFD---RDLSWRTGVQIVPVHCDISNNFKIT 174 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~------------y-~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~ 174 (477)
...+++|.|+.+.=..+...|++.|..|++.+-. - .... ..+... +.++..+.+|-. |
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~ 84 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-NRRIVAAVVDTR-----D 84 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----C
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCC-----C
Confidence 3457777766655556667788889888875321 1 1111 122223 667777777643 5
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 175 REALEAAYERAQEASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.+.+++++++..+.-.++.+++ +|. ..+.+. ..+.++++++.+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lv-nnAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIV-ANAGVAAPQAWDDITPEDFRDVMDI 131 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 7888888877655545677544 444 222232 3567777776663
No 273
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=78.47 E-value=21 Score=32.58 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=61.7
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhh-hCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSW-RTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~-~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+....+++|.|+.+.=..+...|.+.|..|++..-.-...... +.. ..+.++..+.+|-. |.+++++++++
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~ 80 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL-----DALQVRAFAEA 80 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-----CHHHHHHHHHH
Confidence 3444577777766555566677888898888765443322222 211 21334777777643 57788888777
Q ss_pred HHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
..+.-.++.+++.+--..+.+. -.+.+++++..+.
T Consensus 81 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 117 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQL 117 (265)
T ss_dssp HHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6655557775444332333333 3567777777664
No 274
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=77.89 E-value=9.9 Score=34.95 Aligned_cols=101 Identities=12% Similarity=0.219 Sum_probs=59.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++..-. -.. ....++.. |.++..+.+|-. |.+++++++++..+
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-GSDAIAIKADIR-----QVPEIVKLFDQAVA 92 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 456666665554455667788889888774322 111 12223333 677777887643 57888888877665
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
.-.++..+ ++|.. .+.+. -.+.+++++..+.
T Consensus 93 ~~g~id~l-vnnAg~~~~~~~~~~~~~~~~~~~~~ 126 (270)
T 3is3_A 93 HFGHLDIA-VSNSGVVSFGHLKDVTEEEFDRVFSL 126 (270)
T ss_dssp HHSCCCEE-ECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCCEE-EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 54567754 44442 23332 3467777776663
No 275
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=77.83 E-value=17 Score=32.95 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=56.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......... |.++..+.+|-. +.+++++++++..+.-.+
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g~ 79 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-GDAARYQHLDVT-----IEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceeEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 45777766555445666777888988877643322222223322 445666666532 567788877766554446
Q ss_pred eeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
+..|+.+-...+.+ ...+.+++++..+
T Consensus 80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 108 (254)
T 1hdc_A 80 VDGLVNNAGISTGMFLETESVERFRKVVE 108 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 77654432222222 1346666666655
No 276
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=77.44 E-value=13 Score=34.19 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=58.6
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.++
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~i 103 (272)
T 4dyv_A 30 IAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-GDDALCVPTDVT-----DPDSVRALFTATVEKFGRV 103 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-TSCCEEEECCTT-----SHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCCeEEEEecCC-----CHHHHHHHHHHHHHHcCCC
Confidence 4555555554444555778888988887665443333444433 555666666532 5788888887665555577
Q ss_pred eEEEEeCCC--CCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNPS--NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~--NPtG~--~~~~~~l~~l~~~ 219 (477)
.+| ++|.. .+.+. -.+.++++++.+.
T Consensus 104 D~l-VnnAg~~~~~~~~~~~~~~~~~~~~~v 133 (272)
T 4dyv_A 104 DVL-FNNAGTGAPAIPMEDLTFAQWKQVVDT 133 (272)
T ss_dssp CEE-EECCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred CEE-EECCCCCCCCCChhhCCHHHHHHHHHh
Confidence 754 44442 22222 3567777776663
No 277
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=77.38 E-value=13 Score=34.13 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+....+++|.|+.+.=..+...|++.|..|++.. ..-.. ....++.. |.++..+.+|-. |.+++++++++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~ 102 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA-GGRAVAIRADNR-----DAEAIEQAIRE 102 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHH
Confidence 3445677777766555566677888898887652 22111 12223333 777777887643 57888888877
Q ss_pred HHHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
..+...++.+++ +|.. ...+. -.+.++++++.+.
T Consensus 103 ~~~~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~v 139 (271)
T 3v2g_A 103 TVEALGGLDILV-NSAGIWHSAPLEETTVADFDEVMAV 139 (271)
T ss_dssp HHHHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 665555777544 4442 22222 3466777776653
No 278
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=77.35 E-value=17 Score=32.74 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=54.9
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-.......... |+. .+.+|-. |.+++++++++..+...+
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~~~D~~-----~~~~~~~~~~~~~~~~g~ 77 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAH--PVVMDVA-----DPASVERGFAEALAHLGR 77 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-TCE--EEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCE--EEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 45777766655445566677788988877643322222223323 543 3444432 577888877766555456
Q ss_pred eeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
+.+|+ +|.. .+.+ ...+.++++++.+.
T Consensus 78 id~lv-n~Ag~~~~~~~~~~~~~~~~~~~~~ 107 (245)
T 1uls_A 78 LDGVV-HYAGITRDNFHWKMPLEDWELVLRV 107 (245)
T ss_dssp CCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 77655 4432 2222 23466677766653
No 279
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=76.75 E-value=20 Score=32.89 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-...... ++.. |.++..+.+|-. |.+++++++++..+
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV-GHDAEAVAFDVT-----SESEIIEAFARLDE 99 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 34566666665544566677888899888876543332222 2223 666777776642 57888888887766
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
...++.+|+.+--..+.+. ..+.+++++..+.
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 133 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDT 133 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 6667876554322222222 3567777776653
No 280
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=76.56 E-value=21 Score=31.94 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.... ..++.. |.++..+.+|-. |.+.+++++++..+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK-GFKARGLVLNIS-----DIESIQNFFAEIKA 78 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEecCC-----CHHHHHHHHHHHHH
Confidence 345777766655445566677788988887665433222 223333 667777777643 67888888887766
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
...++.+|+.+--..+.+. -.+.+++++..+
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVIN 111 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 6667886554432222222 346667766655
No 281
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=76.53 E-value=23 Score=32.55 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=59.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc------------cch---HHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY------------AAF---DRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y------------~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++..-.- ... ...+... |.++..+.+|-. |.
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~ 83 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-GRRCISAKVDVK-----DR 83 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc-CCeEEEEeCCCC-----CH
Confidence 34577777666554566677888898887764321 011 1122223 667777777643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~ 218 (477)
+++++++++..+...++.+++ +|.. .+.+ .-.+.+++++..+
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 128 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAI-TNAGISTIALLPEVESAQWDEVIG 128 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEE-ECCCCCCCCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 888888877665555777544 4442 2223 2356777776655
No 282
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=76.42 E-value=14 Score=34.88 Aligned_cols=101 Identities=10% Similarity=0.152 Sum_probs=59.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC----------cc---chHHHHhhhCCcEEEEEeccCCCCcccCHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPY----------YA---AFDRDLSWRTGVQIVPVHCDISNNFKITREAL 178 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~----------y~---~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l 178 (477)
..+++|.|+.+.=..+...|++.|..|++.+-. -. .....+... |.++..+.+|-. |.+++
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v 101 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA-GGEAVADGSNVA-----DWDQA 101 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT-TCEEEEECCCTT-----SHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHH
Confidence 346666665544455667788889888876432 11 122223333 777888877643 57888
Q ss_pred HHHHHHHHHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 179 EAAYERAQEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 179 ~~~~~~~~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
++++++..+.-.++.+ +++|.. ...+ .-.+.++++++.+.
T Consensus 102 ~~~~~~~~~~~g~iD~-lv~nAg~~~~~~~~~~~~~~~~~~~~v 144 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDV-LVNNAGIVRDRMIANTSEEEFDAVIAV 144 (322)
T ss_dssp HHHHHHHHHHHSCCCE-EECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCE-EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 8888776655456775 444442 2222 23566777776653
No 283
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=76.30 E-value=24 Score=32.43 Aligned_cols=104 Identities=13% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|.|+.+.=..+...|++.|..|++..-.-..... .+... |.++..+.+|-. |.+++++++++..
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV-GGKALPIRCDVT-----QPDQVRGMLDQMT 104 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-TCCCEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEcCCC-----CHHHHHHHHHHHH
Confidence 34467777776655556667788889888876554333322 22223 556677777643 5788888887766
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.-.++.+|+.+--..+.+. -.+.++++++.+.
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 139 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDT 139 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55456776544322222222 3467777776653
No 284
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=76.14 E-value=15 Score=33.78 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC--------c-----cc---hHHHHhhhCCcEEEEEeccCCCCcccC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY--------Y-----AA---FDRDLSWRTGVQIVPVHCDISNNFKIT 174 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~--------y-----~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~ 174 (477)
...+++|.|+.+.=..+...|++.|-.|++.+-. | .. ....+... |.++..+.+|-. |
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~ 88 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-GRKALTRVLDVR-----D 88 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-TCCEEEEECCTT-----C
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-CCeEEEEEcCCC-----C
Confidence 3457777766655556667788889888875421 1 11 11222333 667777777643 5
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.+++++++++..+.-.++.+++.+--..+.+. -.+.++++++.+.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 135 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGV 135 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhh
Confidence 78888888776655557775444322223232 3467777776653
No 285
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=76.03 E-value=26 Score=32.55 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch----HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF----DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~----~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-..- ...++.. |.++..+.+|-. |.+++++++++..
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLS-----DEQHCKDIVQETV 120 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTT-----SHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHH
Confidence 34577777766555566677888898887765433211 1222333 677777887643 5788888887766
Q ss_pred HhCCCeeEEEEeCCC--CCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS--NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~--NPtG~--~~~~~~l~~l~~~ 219 (477)
+...++..++ +|.. .+.+. ..+.++++++.+.
T Consensus 121 ~~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~~v 156 (291)
T 3ijr_A 121 RQLGSLNILV-NNVAQQYPQQGLEYITAEQLEKTFRI 156 (291)
T ss_dssp HHHSSCCEEE-ECCCCCCCCSSGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEE-ECCCCcCCCCCcccCCHHHHHHHHHH
Confidence 5555777644 4432 22222 2466777776663
No 286
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=75.91 E-value=10 Score=33.81 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=59.4
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hh-hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LS-WRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~-~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|+|+...=..+...|.+.|..|++..-.-...... +. .. |.++..+.+|-. |.+.+++++++..+.
T Consensus 4 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~ 77 (235)
T 3l77_A 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVS-----KAESVEEFSKKVLER 77 (235)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTT-----CHHHHHHHCC-HHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccC-----CHHHHHHHHHHHHHh
Confidence 467777766554556677888898888766543332222 21 23 677777777643 577888877665554
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
..++..++.+-...+.+. ..+.+++++..+.
T Consensus 78 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 110 (235)
T 3l77_A 78 FGDVDVVVANAGLGYFKRLEELSEEEFHEMIEV 110 (235)
T ss_dssp HSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred cCCCCEEEECCccccccCcccCCHHHHHHHHHH
Confidence 456776554332333332 3466777776653
No 287
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=75.57 E-value=28 Score=31.59 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=59.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|+|+.+.=..+...|++.|..|++..-.-..... .+... |.++..+.+|-. +.+.+++++++..+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA-GGEAESHACDLS-----HSDAIAAFATGVLAA 103 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-CCceeEEEecCC-----CHHHHHHHHHHHHHh
Confidence 356666665544445556777889888877654433222 22223 667777777643 578888888776555
Q ss_pred CCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+-.. .+.+. ..+.++++++.+
T Consensus 104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 136 (262)
T 3rkr_A 104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA 136 (262)
T ss_dssp HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHH
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHH
Confidence 5577765544322 23332 356667766655
No 288
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=75.53 E-value=16 Score=32.94 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=56.6
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|.|+.+.=..+...|++.|..|++.+-.-.......... .++..+.+|-. |.+++++++++..+.-.++
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~i 76 (247)
T 3dii_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER--PNLFYFHGDVA-----DPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC--TTEEEEECCTT-----SHHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--ccCCeEEeeCC-----CHHHHHHHHHHHHHHcCCC
Confidence 4677777665555666778888988887654433333333222 23335555532 5788888887766554577
Q ss_pred eEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.+++.+--..+.+. ..+.++++++.+.
T Consensus 77 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 105 (247)
T 3dii_A 77 DVLVNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp CEEEECCC-CCCCGGGTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 76544332222222 3566777766653
No 289
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=75.36 E-value=16 Score=33.46 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=60.9
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch----HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF----DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~----~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+....+++|+|+.+.=..+...|++.|..|++..-.-... ...++.. |.++..+.+|-. |.+.+++++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~ 100 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK-GYKAAVIKFDAA-----SESDFIEAIQT 100 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHH
Confidence 3445677777666554566677788898877654422211 1223333 667777777643 57788888877
Q ss_pred HHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
..+...++.+|+.+-...+.+ ...+.++++++.+
T Consensus 101 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~ 136 (271)
T 4iin_A 101 IVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVID 136 (271)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHH
Confidence 665555777655443222222 2356677766655
No 290
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=75.22 E-value=18 Score=33.04 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-...... +....|.++..+.+|-. |.+.+++++++..+
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLA-----EPDAPAELARRAAE 94 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----STTHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 34566666655544556677888898888765443322222 21112667777777643 45666666666555
Q ss_pred hCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
...++.+++.+--....+ .-.+.+++++..+.
T Consensus 95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 128 (266)
T 4egf_A 95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAV 128 (266)
T ss_dssp HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 445777655443222222 23566777766653
No 291
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=75.16 E-value=16 Score=32.90 Aligned_cols=101 Identities=11% Similarity=0.152 Sum_probs=58.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cch---HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAF---DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|++.|..|++..-.- ... ...++.. |.++..+.+|-. |.+++++++++..+.
T Consensus 6 ~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-GVDSFAIQANVA-----DADEVKAMIKEVVSQ 79 (246)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 466766665544556677888898887643322 111 2223333 677777777643 578888888776655
Q ss_pred CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
..++..++.+-...+.+ ...+.++++++.+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDT 112 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55777644332222222 23567777776653
No 292
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=75.15 E-value=33 Score=31.79 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCC--CeEEEcCCCccchHHHHhh-hCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPG--DAFLVPSPYYAAFDRDLSW-RTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~G--d~vlv~~P~y~~~~~~~~~-~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+++++|++..-++++...+..++..|. ..|+......+.-...... .....+.-+.-+. +-.+..+..++..+..
T Consensus 154 id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~~~~~~~~~~~~~Pvl~~hG~~--D~~Vp~~~~~~~~~~L 231 (285)
T 4fhz_A 154 LPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAPERLAEEARSKPPVLLVHGDA--DPVVPFADMSLAGEAL 231 (285)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSCHHHHHHHCCCCCCEEEEEETT--CSSSCTHHHHHHHHHH
T ss_pred CCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccCchhhhhhhhhcCcccceeeCC--CCCcCHHHHHHHHHHH
Confidence 789999997777777666655554443 3455444433322222211 2244455554332 2345666666666666
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
++.+.++...++.. .|..++.++++.+.+|.+++
T Consensus 232 ~~~g~~~~~~~y~g----~gH~i~~~~l~~~~~fL~~~ 265 (285)
T 4fhz_A 232 AEAGFTTYGHVMKG----TGHGIAPDGLSVALAFLKER 265 (285)
T ss_dssp HHTTCCEEEEEETT----CCSSCCHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECC----CCCCCCHHHHHHHHHHHHHH
Confidence 66676766555432 35567899999999998864
No 293
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=74.91 E-value=24 Score=31.99 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|.|+.+.=..+...|++.|..|++..-.-..... .++.. |.++..+.+|-. |.+.+++++++..
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA-GGKAIGLECNVT-----DEQHREAVIKAAL 84 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHH
Confidence 33456666666554455667788889888876544332222 22333 667777777643 5788888887766
Q ss_pred HhCCCeeEEEEeCCC-C-CcccCCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS-N-PLGTTLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~-N-PtG~~~~~~~l~~l~~ 218 (477)
+...++.+++ +|.. . +...-.+.+++++..+
T Consensus 85 ~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~ 117 (256)
T 3gaf_A 85 DQFGKITVLV-NNAGGGGPKPFDMPMSDFEWAFK 117 (256)
T ss_dssp HHHSCCCEEE-ECCCCCCCCCTTCCHHHHHHHHH
T ss_pred HHcCCCCEEE-ECCCCCCCCCCCCCHHHHHHHHH
Confidence 5555777544 4442 2 2222467777777655
No 294
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=74.82 E-value=15 Score=34.65 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=58.9
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-------c-----cch---HHHHhhhCCcEEEEEeccCCCCcccCHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPY-------Y-----AAF---DRDLSWRTGVQIVPVHCDISNNFKITRE 176 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-------y-----~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~ 176 (477)
..+++|.|+.+.=..+...|++.|..|++.+-. + ... ...+... |.++..+.+|-. |.+
T Consensus 47 k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~ 120 (317)
T 3oec_A 47 KVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-GRRIIARQADVR-----DLA 120 (317)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCC-----CHH
Confidence 456666666554456667788889888775322 1 011 1122223 677777777643 578
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 177 ALEAAYERAQEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
++++++++..+.-.++.+|+ +|.. .+.+. .++.++++++.+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lV-nnAg~~~~~~~~~~~~~~~~~~~~v 165 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILV-SNVGISNQGEVVSLTDQQWSDILQT 165 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEE-ECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHHH
Confidence 88888877665555777544 4442 22232 3566777776653
No 295
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=74.71 E-value=20 Score=32.58 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+.+.=..+...|++.|..|++. ...-.... ..++.. |.++..+.+|-. |.+++++++++..
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~ 81 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL-GRSALAIKADLT-----NAAEVEAAISAAA 81 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT-TSCCEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCceEEEEcCCC-----CHHHHHHHHHHHH
Confidence 3457777766654456667788889888776 43332222 222323 666677777642 5788888887766
Q ss_pred HhCCCeeEEEEeCCCC-Cccc--CCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSN-PLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~N-PtG~--~~~~~~l~~l~~ 218 (477)
+.-.++.+++.+.-.. +.+. ..+.++++++.+
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 116 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLD 116 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHH
Confidence 6555777655432222 3232 356667776655
No 296
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=74.70 E-value=30 Score=31.61 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=59.8
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
.+++|+|+.+.=..+...|++.|..|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA-GGTALAQVLDVT-----DRHSVAAFAQAAVDTW 79 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHHHc
Confidence 46666665544455566788889888876544332222 23333 677777777643 5788888887766555
Q ss_pred CCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 190 INIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++.+++.+--..+.+. -.+.++++++.+.
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 57776544322233332 3467777777663
No 297
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=74.62 E-value=19 Score=32.47 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=56.6
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+.+.=..+...|.+.|..|++.. ..-.. ....+... +.++..+.+|-. |.+.+++++++..+.
T Consensus 15 ~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 15 IAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL-GFDFYASEGNVG-----DWDSTKQAFDKVKAE 88 (256)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT-TCCCEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-CCeeEEEecCCC-----CHHHHHHHHHHHHHh
Confidence 455555554444455567788898777643 22222 22233333 666667776632 578888888877666
Q ss_pred CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
..++.+|+.+--..+.+ .-.+.+++++..+
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 120 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVID 120 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 66787655432222222 2356666666655
No 298
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=74.29 E-value=18 Score=33.07 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=55.6
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|-.|++..-.-.......+.. +.++..+.+|-. |.+++++++++..+.-.+
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-EAEAIAVVADVS-----DPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-CSSEEEEECCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCceEEEEcCCC-----CHHHHHHHHHHHHHHcCC
Confidence 45777766655445566777788988877654332223333322 345666666532 577888887766554456
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+--..+.+. ..+.++++++.+
T Consensus 81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 109 (263)
T 2a4k_A 81 LHGVAHFAGVAHSALSWNLPLEAWEKVLR 109 (263)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHH
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 776554322222222 235556665554
No 299
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=73.96 E-value=23 Score=33.11 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=60.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|+|+.+.=..+...|++.|..|++..-.-...... +... |.++..+.+|-. |.+++++++++..+
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ-GFDAHGVVCDVR-----HLDEMVRLADEAFR 104 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEccCC-----CHHHHHHHHHHHHH
Confidence 34577777666544556677788898888766544333222 2223 667777777643 57888888877655
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
...++.+|+ +|.. .+.|. ..+.++++++.+
T Consensus 105 ~~g~id~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 137 (301)
T 3tjr_A 105 LLGGVDVVF-SNAGIVVAGPLAQMNHDDWRWVID 137 (301)
T ss_dssp HHSSCSEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred hCCCCCEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence 545677644 4442 22232 356677776655
No 300
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=73.78 E-value=26 Score=31.66 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=59.6
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|++.|..|++..-.-...... ++.. +.++..+.+|-. |.+++++++++..+.
T Consensus 7 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-PGQILTVQMDVR-----NTDDIQKMIEQIDEK 80 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS-TTCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 3466666655444556677888898888765443332222 2222 567777777643 578888888776655
Q ss_pred CCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
..++.+++ +|.. .+.+ ...+.+++++..+.
T Consensus 81 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T 3imf_A 81 FGRIDILI-NNAAGNFICPAEDLSVNGWNSVINI 113 (257)
T ss_dssp HSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55777544 4442 2222 23567777776664
No 301
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=73.62 E-value=26 Score=31.77 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=55.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 80 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-ADAARYVHLDVT-----QPAQWKAAVDTAVTAFG 80 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-hcCceEEEecCC-----CHHHHHHHHHHHHHHcC
Confidence 345777766655445566677788988877543322222222222 223455555532 57788888876655444
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+.+-.....+. -.+.+++++..+
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 110 (260)
T 1nff_A 81 GLHVLVNNAGILNIGTIEDYALTEWQRILD 110 (260)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 6776554322222232 246666666655
No 302
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=73.60 E-value=7.9 Score=39.58 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=23.9
Q ss_pred CcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 203 PLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 203 PtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
|.|..++.+++++|++.|+++||-||-
T Consensus 207 ~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 207 PVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp TTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 446789999999999999999999883
No 303
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=73.55 E-value=30 Score=31.58 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=57.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---H-hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---L-SWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|+|+...=..+...|++.|..|++..-.-...... + ... |.++..+.+|-. +.+++++++++..
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVS-----NYEEVKKLLEAVK 94 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCC-----CHHHHHHHHHHHH
Confidence 34577776665555566677888898887765432222211 1 222 666777776642 5778888877665
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.-.++.+|+.+-.....+. -.+.++++++.+
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 128 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIE 128 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 54446776554322222222 246667766665
No 304
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=73.24 E-value=28 Score=31.62 Aligned_cols=103 Identities=10% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|.+.|-.|++..-.-..... .+... |.++..+.+|-. |.+++++++++..+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT-GRRALSVGTDIT-----DDAQVAHLVDETMK 84 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 3457777776655456667788889888877654333222 22323 667777777643 57888888887766
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
...++..++.+--. .+.+. ..+.+++++..+.
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 119 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIEL 119 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHH
Confidence 65677765443212 12222 3566777776653
No 305
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=72.98 E-value=28 Score=32.00 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=60.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|++.|-.|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+.
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVT-----STDEVHAAVAAAVER 98 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence 356777766655556667788889888876544332222 22333 667777777643 578888888776655
Q ss_pred CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
-.++.+|+.+--..+.+ ...+.++++++.+.
T Consensus 99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (279)
T 3sju_A 99 FGPIGILVNSAGRNGGGETADLDDALWADVLDT 131 (279)
T ss_dssp HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55777544332222223 23566777766653
No 306
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=72.92 E-value=28 Score=31.28 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=58.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|+|+.+.=..+...|.+.|-.|++..-.-..... .+... |.++..+.+|-. |.+++++++++..+.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA-GAKVHVLELDVA-----DRQGVDAAVASTVEA 81 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence 457777776655556667788889888776433222221 12222 556667776642 577888887766554
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
-.++.+++.+--..+.+. -.+.++++++.+
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 113 (247)
T 2jah_A 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMID 113 (247)
T ss_dssp HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 446776544322233332 246667776665
No 307
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=72.80 E-value=18 Score=33.47 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=53.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.......... +.++..+.+|-. +.+.+++++++..+...
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 78 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-GGNAVGVVGDVR-----SLQDQKRAAERCLAAFG 78 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-BTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-CCcEEEEEcCCC-----CHHHHHHHHHHHHHhcC
Confidence 345777777665555666778888988888765544444434433 667777777642 57788888877655545
Q ss_pred CeeEEEEeCC
Q 011801 191 NIKGLIITNP 200 (477)
Q Consensus 191 ~~k~vii~nP 200 (477)
++.+ +++|.
T Consensus 79 ~iD~-lvnnA 87 (281)
T 3zv4_A 79 KIDT-LIPNA 87 (281)
T ss_dssp CCCE-EECCC
T ss_pred CCCE-EEECC
Confidence 6775 44444
No 308
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=72.49 E-value=26 Score=31.75 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.......... ..++..+.+|-. |.+++++++++..+...
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-ENGGFAVEVDVT-----KRASVDAAMQKAIDALG 85 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-TTCCEEEECCTT-----CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-hcCCeEEEEeCC-----CHHHHHHHHHHHHHHcC
Confidence 345777766655445566777788888877643322222222221 223444555532 57788888776655545
Q ss_pred CeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
++.+|+.+--..+.+ ...+.++++...+
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 115 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFD 115 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 677554332222222 2346666766655
No 309
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=72.45 E-value=13 Score=38.06 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=64.2
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHh---cCC---------C-C-----eEEEcCCCccc-------------------hH
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCL---ANP---------G-D-----AFLVPSPYYAA-------------------FD 149 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l---~~~---------G-d-----~vlv~~P~y~~-------------------~~ 149 (477)
+.++++.|.+++++..++...++.| +.. | . ..+...|.|+- +.
T Consensus 126 L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~i 205 (525)
T 3gh5_A 126 LITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQI 205 (525)
T ss_dssp EEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHH
T ss_pred EEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHHHHHH
Confidence 4566778888776655544444433 221 2 1 23455666631 12
Q ss_pred HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 150 ~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
..+... +++...+.+..+.+|.+..+.+.+.-+. +... .-..+.|-.++.+++++|++.|++++|-||
T Consensus 206 d~mA~~-KlN~lH~HltDdqgwriei~~~P~Lt~~----Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VI 273 (525)
T 3gh5_A 206 DLASQY-KINKFHMHLSDDQGWRIEIKSWPDLIEI----GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVI 273 (525)
T ss_dssp HHHHTT-TCCEEEEECBCSSCBCBCCTTSTHHHHT----TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHc-CCcEEEEEeccCCccccccccchhhhhc----cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 233333 6777777766556676655544433221 1110 001234678999999999999999999988
No 310
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=71.97 E-value=25 Score=32.03 Aligned_cols=105 Identities=22% Similarity=0.240 Sum_probs=60.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|.|+.+.=..+...|++.|..|++..-.-...... ++...+.++..+.+|-. |.+.+++++++..
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVS-----DRAQCDALAGRAV 83 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCC-----CHHHHHHHHHHHH
Confidence 344567776665554556677888898888765443332222 22221256777777643 5778888877665
Q ss_pred HhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
++-.++.+++.+--..+.+ ...+.++++++.+.
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 118 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAV 118 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 5555777654432222222 23466777776653
No 311
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=71.75 E-value=21 Score=32.42 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCccch----HHHH-hhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 111 PDRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYAAF----DRDL-SWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 111 ~~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~~~----~~~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
...+++|.|+ .+.=..+...|++.|..|++..-.-... ...+ ... +.++..+.+|-. |.+.++++++
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~ 93 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVD-----SYESCEKLVK 93 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTT-----CHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCC-----CHHHHHHHHH
Confidence 3457777665 3333345566777898887764433222 1112 223 667777777642 5788888888
Q ss_pred HHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 184 RAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+..+...++.+|+.+-...+.+. -.+.+++++..+
T Consensus 94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~ 130 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQ 130 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 77666667886554322222222 336666766655
No 312
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=71.72 E-value=27 Score=32.98 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=54.0
Q ss_pred cEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..| ..++++.+-.+-.-.-|.+++..|+|... ++.+.+.+.+.++...+..
T Consensus 79 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~----------------------~~~s~~~l~~~f~~va~a~ 136 (309)
T 3fkr_A 79 PVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGAT----------------------FRVPEAQIFEFYARVSDAI 136 (309)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTT----------------------BCCCHHHHHHHHHHHHHHC
T ss_pred cEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccC----------------------CCCCHHHHHHHHHHHHHhc
Confidence 3776544 55666655444322339999999988310 0112344444444332222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
....++.++|. ||..++.+.+.+|++- -.|+.=|=||+
T Consensus 137 -~lPiilYn~P~--tg~~l~~~~~~~La~~--~pnIvgiK~~~ 174 (309)
T 3fkr_A 137 -AIPIMVQDAPA--SGTALSAPFLARMARE--IEQVAYFXIET 174 (309)
T ss_dssp -SSCEEEEECGG--GCCCCCHHHHHHHHHH--STTEEEEEECS
T ss_pred -CCCEEEEeCCC--CCCCCCHHHHHHHHhh--CCCEEEEECCC
Confidence 56678888884 8999998777776641 24676666444
No 313
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=71.42 E-value=49 Score=28.84 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=44.8
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+...+-.+++..+-.. +.|..|++..-.- ...++...++.++.++. +.-++-.++.++++.+. |.
T Consensus 33 i~~~~l~~~v~~a~~~--~~~~dVIISRGgt---a~~lr~~~~iPVV~I~~--------s~~Dil~al~~a~~~~~--kI 97 (196)
T 2q5c_A 33 TKTASLTRASKIAFGL--QDEVDAIISRGAT---SDYIKKSVSIPSISIKV--------TRFDTMRAVYNAKRFGN--EL 97 (196)
T ss_dssp EEECCHHHHHHHHHHH--TTTCSEEEEEHHH---HHHHHTTCSSCEEEECC--------CHHHHHHHHHHHGGGCS--EE
T ss_pred EEECCHHHHHHHHHHh--cCCCeEEEECChH---HHHHHHhCCCCEEEEcC--------CHhHHHHHHHHHHhhCC--cE
Confidence 3455566788776654 6665577766433 33444444888888875 34567777777766554 44
Q ss_pred EEEeCCCCC
Q 011801 195 LIITNPSNP 203 (477)
Q Consensus 195 vii~nP~NP 203 (477)
-++..++-+
T Consensus 98 avvg~~~~~ 106 (196)
T 2q5c_A 98 ALIAYKHSI 106 (196)
T ss_dssp EEEEESSCS
T ss_pred EEEeCcchh
Confidence 466655443
No 314
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=71.24 E-value=41 Score=29.79 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhh-hCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSW-RTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~-~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|+|+...=..+...|.+.|..|++..-.-...... +.. . +.++..+.+|-. |.+.+++++++..
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLL-----SEESINKAFEEIY 80 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCC-----CHHHHHHHHHHHH
Confidence 34566666655444455566777888877765432222211 111 2 556666666532 5788888887766
Q ss_pred HhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
+.-.++.+|+.+-...+.+ ...+.+++++..+
T Consensus 81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLK 114 (248)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHh
Confidence 5555677655443222222 1245555655544
No 315
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=70.88 E-value=37 Score=30.73 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=59.0
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+.+.=..+...|.+.|-.|++. ...-.... ..++.. |.++..+.+|-. |.+++++++++..+.
T Consensus 6 ~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 6 CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL-GVKVLVVKANVG-----QPAKIKEMFQQIDET 79 (258)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 46666665554455667788889887774 43322222 222323 667777777643 578888888776655
Q ss_pred CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
..++.+++.+--..+.+ ...+.++++++.+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNI 112 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55777654433222222 23566777766653
No 316
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=70.86 E-value=20 Score=32.80 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=59.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccch---HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAF---DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++. ...-... ...++.. |.++..+.+|-. |.+++++++++..+
T Consensus 28 k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 28 KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA-GGKALTAQADVS-----DPAAVRRLFATAEE 101 (267)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCeEEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 356777766655556667788889888774 2222111 2223333 667777777643 57888888877665
Q ss_pred hCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
...++.+++ +|. ..+.+. -.+.++++++.+.
T Consensus 102 ~~g~iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~v 135 (267)
T 3u5t_A 102 AFGGVDVLV-NNAGIMPLTTIAETGDAVFDRVIAV 135 (267)
T ss_dssp HHSCEEEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 555777644 444 233232 3466667766553
No 317
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=70.48 E-value=52 Score=30.13 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=57.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|+|+...=..+...|++.|..|++..-.-.... ..++.. |.++..+.+|-. |.+.+++++++..+.
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~-----d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF-GYESSGYAGDVS-----KKEEISEVINKILTE 118 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-CCceeEEECCCC-----CHHHHHHHHHHHHHh
Confidence 35777766555445566778888988877542222121 122222 556666776642 578888888776555
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+-...+.+. ..+.+++++..+
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 150 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLR 150 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 556776554332222222 245666666555
No 318
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0
Probab=70.39 E-value=50 Score=28.12 Aligned_cols=108 Identities=11% Similarity=0.156 Sum_probs=61.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
+++++|++..-+.++...+..+...| -+.++...|.++.............+.-+.-+ .+-.+..+..++..+..+
T Consensus 99 ~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~p~li~~G~--~D~~v~~~~~~~~~~~l~ 176 (209)
T 3og9_A 99 LDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAP--NDMIVPQKNFGDLKGDLE 176 (209)
T ss_dssp CCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCCCCCCCTTCEEEEEECT--TCSSSCHHHHHHHHHHHH
T ss_pred CCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcccccccccCCCEEEEcCC--CCCccCHHHHHHHHHHHH
Confidence 46778888776666666665555444 35677777765432221111124555544433 233455555555554444
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
+.+.++. +... |.|..++.++++.+.++.+++
T Consensus 177 ~~~~~~~--~~~~---~~gH~~~~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 177 DSGCQLE--IYES---SLGHQLTQEEVLAAKKWLTET 208 (209)
T ss_dssp HTTCEEE--EEEC---SSTTSCCHHHHHHHHHHHHHH
T ss_pred HcCCceE--EEEc---CCCCcCCHHHHHHHHHHHHhh
Confidence 4444443 3332 367888999999999988764
No 319
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=70.31 E-value=30 Score=31.65 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.... ..+... |.++..+.+|-. |.+++++++++..+
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA-GLEGRGAVLNVN-----DATAVDALVESTLK 101 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-TCCCEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEEeCC-----CHHHHHHHHHHHHH
Confidence 345666666555445566778888988887655433222 222333 556666666532 57888888876655
Q ss_pred hCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.-.++.++ ++|.. .+.+ ...+.++++++.+.
T Consensus 102 ~~g~iD~l-vnnAg~~~~~~~~~~~~~~~~~~~~v 135 (270)
T 3ftp_A 102 EFGALNVL-VNNAGITQDQLAMRMKDDEWDAVIDT 135 (270)
T ss_dssp HHSCCCEE-EECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HcCCCCEE-EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 54567754 44442 2223 23566777776653
No 320
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=69.97 E-value=30 Score=31.35 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=58.7
Q ss_pred CCcEEEeCCh-HHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGA-TGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~-t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+ ++.=..+...|++.|..|++..-.-...... ++...+.++..+.+|-. |.+.+++++++..
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~-----~~~~v~~~~~~~~ 96 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVT-----STEAVDALITQTV 96 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCC-----CHHHHHHHHHHHH
Confidence 3457777764 3333445566777888888765443322222 22222356777777643 5788888887766
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+...++.+|+.+--..+.+. -.+.+++++..+.
T Consensus 97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 131 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNV 131 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 55557776554332222232 3466777766653
No 321
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=69.86 E-value=42 Score=30.13 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc-chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA-AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~-~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
..+++|.|+...=..+...|.+.|..|++..-.-. .....+... |.++..+.+|-. |.+++++++++..+.-.
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARH-GVKAVHHPADLS-----DVAQIEALFALAEREFG 78 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT-SCCEEEECCCTT-----SHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhc-CCceEEEeCCCC-----CHHHHHHHHHHHHHHcC
Confidence 34666666554445566677788888777543221 122223323 556666766532 57888888876655444
Q ss_pred CeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
++.+|+.+--..+.+ ...+.++++++.+
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIA 108 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 677554432222222 2246666766655
No 322
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=69.57 E-value=40 Score=31.08 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-...... +... |.++..+.+|-. |.+++++++++..+
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-GGQAIALEADVS-----DELQMRNAVRDLVL 101 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 34567777766555566677888898888766544333222 2223 667777777643 57888888877665
Q ss_pred hCCCeeEEEEeCCC-C-Cccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-N-PLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~-N-PtG~--~~~~~~l~~l~~~ 219 (477)
...++.+++ +|.. . +.+. -.+.++++++.+.
T Consensus 102 ~~g~iD~lV-nnAg~~~~~~~~~~~~~~~~~~~~~v 136 (283)
T 3v8b_A 102 KFGHLDIVV-ANAGINGVWAPIDDLKPFEWDETIAV 136 (283)
T ss_dssp HHSCCCEEE-ECCCCCCCBCCTTTSCHHHHHHHHHH
T ss_pred HhCCCCEEE-ECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 555777544 4442 2 2122 3566777776653
No 323
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=69.32 E-value=28 Score=31.45 Aligned_cols=103 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh---hh--CCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS---WR--TGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~---~~--~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......+ .. .+.++..+++|-. |.+++++++++.
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~ 81 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDIT-----DCTKADTEIKDI 81 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCC-----CHHHHHHHHHHH
Confidence 3456777666554456667777888888876554333222221 11 1245566666532 578888888776
Q ss_pred HHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPSNPLG-TTLDRDTLKSLVS 218 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~ 218 (477)
.+...++.+++.+--....+ ...+.+++++..+
T Consensus 82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~ 115 (250)
T 3nyw_A 82 HQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIME 115 (250)
T ss_dssp HHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHH
T ss_pred HHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHH
Confidence 65555787654432222222 2345556666555
No 324
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=69.22 E-value=31 Score=32.02 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc--c---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA--A---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~--~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-. . ....++.. |.++..+.+|-. |.+.+++++++.
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~ 122 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC-GRKAVLLPGDLS-----DESFARSLVHKA 122 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT-TCCEEECCCCTT-----SHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc-CCcEEEEEecCC-----CHHHHHHHHHHH
Confidence 345777777665555666778888988877543211 1 11222333 667777776642 577888888776
Q ss_pred HHhCCCeeEEEEeCCCC--Ccc--cCCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPSN--PLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~N--PtG--~~~~~~~l~~l~~~ 219 (477)
.+...++.+++ +|... +.+ .-++.++++++.+.
T Consensus 123 ~~~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~v 159 (294)
T 3r3s_A 123 REALGGLDILA-LVAGKQTAIPEIKDLTSEQFQQTFAV 159 (294)
T ss_dssp HHHHTCCCEEE-ECCCCCCCCSSGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEE-ECCCCcCCCCCcccCCHHHHHHHHHH
Confidence 65555777654 44421 222 23577777777664
No 325
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=69.19 E-value=38 Score=30.22 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=55.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE-EEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI-VPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~-~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
....+++|+|+...=..+...|.+.|..|++..-.-.......... +.++ ..+.+|-. |.+.+++++++..+
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~-----~~~~~~~~~~~~~~- 82 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-GAAVAARIVADVT-----DAEAMTAAAAEAEA- 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-GGGEEEEEECCTT-----CHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cccceeEEEEecC-----CHHHHHHHHHHHHh-
Confidence 3445777766555445566677778888777654322222222222 4444 55555532 57788887776544
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+-...+.+. ..+.+++++..+
T Consensus 83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (254)
T 2wsb_A 83 VAPVSILVNSAGIARLHDALETDDATWRQVMA 114 (254)
T ss_dssp HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHH
T ss_pred hCCCcEEEECCccCCCCCcccCCHHHHHHHHH
Confidence 346776554432222232 245566665554
No 326
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=69.18 E-value=32 Score=32.55 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=57.0
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-----cc---chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPY-----YA---AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-----y~---~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
.+++|+|+.+.=..+...|++.|..|++..-. -. .....+... |.++..+.+|-. |.+.+++++++
T Consensus 7 ~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~-~~~~~~~~~Dvt-----d~~~v~~~~~~ 80 (324)
T 3u9l_A 7 IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN-DVDLRTLELDVQ-----SQVSVDRAIDQ 80 (324)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH-TCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc-CCcEEEEEeecC-----CHHHHHHHHHH
Confidence 46666665554456667788899988864221 11 111122223 666777777642 57888888877
Q ss_pred HHHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
..+...++.+|+ +|.. .+.|. .++.++++++.+
T Consensus 81 ~~~~~g~iD~lV-nnAG~~~~~~~~~~~~~~~~~~~~ 116 (324)
T 3u9l_A 81 IIGEDGRIDVLI-HNAGHMVFGPAEAFTPEQFAELYD 116 (324)
T ss_dssp HHHHHSCCSEEE-ECCCCCBCSCGGGSCHHHHHHHHH
T ss_pred HHHHcCCCCEEE-ECCCcCCCCChhhCCHHHHHHHHH
Confidence 665555777544 4442 33332 346677766655
No 327
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=69.18 E-value=38 Score=30.59 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|.+.|..|++..-.-......... ..|.++..+.+|-. |.+++++++++..+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVA-----TPEGVDAVVESVRS 81 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 34577777665544566677778888887764332222211111 01445666666532 57788888776655
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+ +|.. .+.+. -.+.+++++..+
T Consensus 82 ~~g~id~lv-~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (263)
T 3ai3_A 82 SFGGADILV-NNAGTGSNETIMEAADEKWQFYWE 114 (263)
T ss_dssp HHSSCSEEE-ECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 444677544 4432 22222 246666666555
No 328
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=69.03 E-value=32 Score=31.03 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=55.3
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.+++|.|+...=..+...|.+.|..|++..-.-.. ... .++.. |.++..+.+|-. |.+++++++++..+
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 77 (258)
T 3a28_C 4 VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-DQKAVFVGLDVT-----DKANFDSAIDEAAE 77 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 46677665554455666777788887765433221 111 22222 556777776642 57778887776655
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+ +|.. .+.+. -.+.++++++.+
T Consensus 78 ~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 110 (258)
T 3a28_C 78 KLGGFDVLV-NNAGIAQIKPLLEVTEEDLKQIYS 110 (258)
T ss_dssp HHTCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HhCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 444677544 4432 22222 246667766655
No 329
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=69.03 E-value=26 Score=31.36 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=55.5
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|.+.|..|++..- .-.... ..++.. |.++..+.+|-. |.+++++++++..+.
T Consensus 6 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 6 VALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVRADVA-----NAEDVTNMVKQTVDV 79 (246)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 4666666554444555677788888776543 222111 122222 556666776642 578888888766554
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+++.+--..+.+. -.+.++++++.+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 111 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVIN 111 (246)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 456776553322222232 246666766655
No 330
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=68.91 E-value=8.6 Score=39.35 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=23.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 205 GTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 205 G~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
|-.++.+++++|++.|++++|-||-
T Consensus 225 ~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 225 GGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp CCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 6789999999999999999999883
No 331
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=68.81 E-value=36 Score=30.60 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=56.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
.+++|.|+...=..+...|.+.|..|++..-.-.... ..+... |.++..+.+|-. |.+.+++++++..+.-
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-GGHAVAVKVDVS-----DRDQVFAAVEQARKTL 77 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCC-----CHHHHHHHHHHHHHHh
Confidence 3667766555445566677788888877643322121 122222 556666776632 5788888887766555
Q ss_pred CCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 190 INIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++..|+.+--..+.+. ..+.++++++.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 109 (256)
T 1geg_A 78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNI 109 (256)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 56776544322223232 2466667666553
No 332
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=68.40 E-value=37 Score=30.77 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---h-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---R-TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-......... . .+.++..+.+|-. |.+.+++++++..+
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS-----DEAQVEAYVTATTE 88 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 4577776665544566677778898877754332222211111 1 1456666776642 57788888776655
Q ss_pred hCCCeeEEEEeCCC-CCc-c--cCCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPL-G--TTLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPt-G--~~~~~~~l~~l~~ 218 (477)
...++.+|+ +|.. .+. + ...+.++++++.+
T Consensus 89 ~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 122 (267)
T 1iy8_A 89 RFGRIDGFF-NNAGIEGKQNPTESFTAAEFDKVVS 122 (267)
T ss_dssp HHSCCSEEE-ECCCCCCCCBCGGGSCHHHHHHHHH
T ss_pred HcCCCCEEE-ECCCcCCCCCCcccCCHHHHHHHHH
Confidence 444677544 4442 211 2 1246667776655
No 333
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=68.29 E-value=37 Score=30.66 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-hHHHHhh---hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA-FDRDLSW---RTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~~---~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|.+.|..|++..-.-.. ....... ..|.++..+.+|-. |.+++++++++..+.
T Consensus 6 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS-----KGEAVRGLVDNAVRQ 80 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTT-----SHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCC-----CHHHHHHHHHHHHHh
Confidence 46666665554455666778889888776543322 2221111 11455666666532 577888887766554
Q ss_pred CCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
-.++.+|+ +|.. .+.+. -.+.+++++..+
T Consensus 81 ~g~iD~lv-~~Ag~~~~~~~~~~~~~~~~~~~~ 112 (260)
T 1x1t_A 81 MGRIDILV-NNAGIQHTALIEDFPTEKWDAILA 112 (260)
T ss_dssp HSCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred cCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 44677554 4432 22221 246666766655
No 334
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=68.21 E-value=41 Score=29.94 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=56.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhhh--CCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWR--TGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~--~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-...... ++.. ....++.++++. -+.+.+++++++..
T Consensus 15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~-----~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN-----ATAQQYRELAARVE 89 (247)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTT-----CCHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecccc-----CCHHHHHHHHHHHH
Confidence 4566666655544556677888898888776543332222 2222 133444444432 25777887777665
Q ss_pred HhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
+...++.+++.+-.. .+.+ ...+.+++++..+.
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 125 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHV 125 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 554567765543222 2322 23466777766653
No 335
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=68.05 E-value=43 Score=30.64 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=56.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.... ..++.. |.++..+.+|-. |.+++++++++..+.
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVR-----SVPEIEALVAAVVER 96 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHHHHHH
Confidence 45777766655445566677788888776543322221 122222 556666776642 578888888776555
Q ss_pred CCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
-.++.+|+ +|.. .+.+. -.+.++++++.+
T Consensus 97 ~g~iD~lv-~~Ag~~~~~~~~~~~~~~~~~~~~ 128 (277)
T 2rhc_B 97 YGPVDVLV-NNAGRPGGGATAELADELWLDVVE 128 (277)
T ss_dssp TCSCSEEE-ECCCCCCCSCGGGCCHHHHHHHHH
T ss_pred hCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 55677654 4442 22222 246666666655
No 336
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=67.86 E-value=29 Score=31.36 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred cCCCcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 109 ~~~~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
.+...+++|.|+ .+.=..+...|++.|..|++..-.-..- ...+... +.++..+.+|-. |.+++++++++
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~ 85 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE-FGSELVFPCDVA-----DDAQIDALFAS 85 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-TTCCCEEECCTT-----CHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHH-cCCcEEEECCCC-----CHHHHHHHHHH
Confidence 344567777765 3333445566777888877764331111 1112112 223455565532 57888888887
Q ss_pred HHHhCCCeeEEEEeCCCCCc----cc---CCCHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPSNPL----GT---TLDRDTLKSLVS 218 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPt----G~---~~~~~~l~~l~~ 218 (477)
..+...++.+++.+--..+. +. -.+.++++...+
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHD 126 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHh
Confidence 76666678865543222221 22 256666666655
No 337
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=67.54 E-value=89 Score=30.67 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCccc---------------hHHHHhhhCCcEEEEEeccCCCCcccC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-PGDAFLVPSPYYAA---------------FDRDLSWRTGVQIVPVHCDISNNFKIT 174 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~---------------~~~~~~~~~g~~~~~v~~~~~~~f~i~ 174 (477)
+..+++|.|+++-=..+...|+. .|-.|++..-.-.. +...++.. |.+...+.+|-. +
T Consensus 47 gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~-G~~a~~i~~Dvt-----d 120 (405)
T 3zu3_A 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK-GLYAKSINGDAF-----S 120 (405)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT-TCCEEEEESCTT-----S
T ss_pred CCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc-CCceEEEECCCC-----C
Confidence 44566666655444455566777 88877754221111 12233444 778888887643 5
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCC
Q 011801 175 REALEAAYERAQEASINIKGLIITNP 200 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP 200 (477)
.+++++++++..++-.++.+ +++|.
T Consensus 121 ~~~v~~~v~~i~~~~G~IDi-LVNNA 145 (405)
T 3zu3_A 121 DEIKQLTIDAIKQDLGQVDQ-VIYSL 145 (405)
T ss_dssp HHHHHHHHHHHHHHTSCEEE-EEECC
T ss_pred HHHHHHHHHHHHHHcCCCCE-EEEcC
Confidence 78888888877766667875 44543
No 338
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=67.50 E-value=47 Score=30.39 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.... ..+... |.++..+.+|-. |.+.++++++...+
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 33 GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS-GGTAQELAGDLS-----EAGAGTDLIERAEA 106 (275)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT-TCCEEEEECCTT-----STTHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 345677766665555666778888988887654333222 222323 667777777643 35666666665554
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
. .++..++ +|.. .+.+. -.+.+++++..+
T Consensus 107 ~-g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 138 (275)
T 4imr_A 107 I-APVDILV-INASAQINATLSALTPNDLAFQLA 138 (275)
T ss_dssp H-SCCCEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred h-CCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 4 4677554 4442 22222 356777777665
No 339
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=67.29 E-value=53 Score=29.30 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=60.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|.|+...=..+...|++.|-.|++..-.-..... .+... +.++..+.+|-. |.+.+++++++..
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD-GGTAISVAVDVS-----DPESAKAMADRTL 81 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHH
Confidence 34457777776655556667788889888876544332222 22223 667777777643 5778888887665
Q ss_pred HhCCCeeEEEEeCCCC----Ccc--cCCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSN----PLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~N----PtG--~~~~~~~l~~l~~ 218 (477)
+...++..|+ +|..- +.+ ...+.+++++..+
T Consensus 82 ~~~g~id~li-~~Ag~~~~~~~~~~~~~~~~~~~~~~~ 118 (253)
T 3qiv_A 82 AEFGGIDYLV-NNAAIFGGMKLDFLLTIDPEYYKKFMS 118 (253)
T ss_dssp HHHSCCCEEE-ECCCCCCGGGGGCTTTSCHHHHHHHHH
T ss_pred HHcCCCCEEE-ECCCcCCCCCCcccccCCHHHHHHHHh
Confidence 5545677654 44421 222 1356667766655
No 340
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=67.17 E-value=46 Score=29.59 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......... ...++..+.+|-. |.+.++++++...+...
T Consensus 7 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS-----DEDGWTKLFDATEKAFG 81 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCC-----CHHHHHHHHHHHHHHhC
Confidence 34666665554444556677778888777543322222222211 0123444555432 56778877776554444
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+.+-...+.+. ..+.+++++..+
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (251)
T 1zk4_A 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLA 111 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 6776554433233332 246666666655
No 341
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=66.64 E-value=18 Score=36.97 Aligned_cols=24 Identities=4% Similarity=0.300 Sum_probs=22.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 205 GTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 205 G~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
|..++.+++++|++.|++++|-||
T Consensus 214 ~~~YT~~di~eiv~yA~~rgI~VI 237 (507)
T 1now_A 214 SHVYTPNDVRMVIEYARLRGIRVL 237 (507)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 667999999999999999999988
No 342
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=66.42 E-value=35 Score=32.09 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=59.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCc--EEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGV--QIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
..+++|+|+...=..+...|++.|..|++..-.-...... +... +. ++..+.+|-. +.+.++++++...
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~-----~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAE-GSGPEVMGVQLDVA-----SREGFKMAADEVE 82 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEEECCCC-----CHHHHHHHHHHHH
Confidence 4577776655444556667778898887765543333222 2222 32 6677776642 5788888888776
Q ss_pred HhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
+...++.+|+ +|.. .+.+. ..+.++++++.+.
T Consensus 83 ~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 117 (319)
T 3ioy_A 83 ARFGPVSILC-NNAGVNLFQPIEESSYDDWDWLLGV 117 (319)
T ss_dssp HHTCCEEEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HhCCCCCEEE-ECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6666787644 4443 22222 2466677766653
No 343
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=66.06 E-value=47 Score=30.39 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGV---QIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
....+++|.|+...=..+...|++.|..|++..-.-..... .++.. +. ++..+.+|-. |.++++++++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~-----~~~~v~~~~~ 83 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEAL-GANGGAIRYEPTDIT-----NEDETARAVD 83 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CCSSCEEEEEECCTT-----SHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEeCCCC-----CHHHHHHHHH
Confidence 33457777776655556667788889888876543322222 22222 33 6777777642 5788888887
Q ss_pred HHHHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 184 RAQEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
+..+...++..++.+--. .+.+ .-.+.++++++.+.
T Consensus 84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 122 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDL 122 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHH
Confidence 766555567754443222 2322 23566777766553
No 344
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=65.96 E-value=59 Score=29.53 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|.+.|..|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK-GLNVEGSVCDLL-----SRTERDKLMQTVAH 94 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHHHHH
Confidence 3457777766555556667788889888776543222222 12222 556666776642 57888888776655
Q ss_pred hC-CCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 188 AS-INIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~-~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.- .++.+++ +|.. .+.+ ...+.++++.+.+.
T Consensus 95 ~~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T 1ae1_A 95 VFDGKLNILV-NNAGVVIHKEAKDFTEKDYNIIMGT 129 (273)
T ss_dssp HTTSCCCEEE-ECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HcCCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 43 4677544 4442 2222 22466677766553
No 345
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=65.73 E-value=69 Score=28.76 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=58.4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|.|+...=..+...|.+.|..|++..-.-..... .+... |.++..+.+|-. |.+++++++++..
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~ 81 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLS-----SRSERQELMNTVA 81 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHH
Confidence 34457777776655556667777888888775433222221 12223 667777777642 5788888887665
Q ss_pred HhC-CCeeEEEEeCCC-CCcc--cCCCHHHHHHHHH
Q 011801 187 EAS-INIKGLIITNPS-NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~-~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~ 218 (477)
+.- .++.+|+ +|.. .+.+ ...+.++++++.+
T Consensus 82 ~~~~g~id~lv-~~Ag~~~~~~~~~~~~~~~~~~~~ 116 (260)
T 2ae2_A 82 NHFHGKLNILV-NNAGIVIYKEAKDYTVEDYSLIMS 116 (260)
T ss_dssp HHTTTCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHcCCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 543 4677654 4432 2222 2346666666655
No 346
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=65.56 E-value=49 Score=30.27 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=53.3
Q ss_pred CcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+ .+.=..+...|.+.|..|++..-.- ......+... +.++..+.+|-. +.+.+++++++..+.
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~ 100 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE-FNPAAVLPCDVI-----SDQEIKDLFVELGKV 100 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG-GCCSEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh-cCCceEEEeecC-----CHHHHHHHHHHHHHH
Confidence 456776654 2233345566777888777654332 1111222222 223455666532 578888888877666
Q ss_pred CCCeeEEEEeCCCCCc----ccC---CCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPL----GTT---LDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPt----G~~---~~~~~l~~l~~ 218 (477)
..++.+|+.+--..+. +.. .+.+++++..+
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (280)
T 3nrc_A 101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHD 137 (280)
T ss_dssp CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHH
T ss_pred cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHH
Confidence 5677765543222222 211 55666666555
No 347
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=65.48 E-value=29 Score=31.94 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=46.4
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+.+.=..+...|++.|..|++..-.- ...... +....|.++..+.+|-.+ ..-..+.+++++++..+.
T Consensus 25 ~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~~~~~v~~~~~~~~~~ 103 (288)
T 2x9g_A 25 AAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN-SNVLPASCEEIINSCFRA 103 (288)
T ss_dssp EEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSC-STTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCC-ccCCHHHHHHHHHHHHHh
Confidence 466666655444556667777888877754333 222211 210125566777766321 000167777777766554
Q ss_pred CCCeeEEEEeCC
Q 011801 189 SINIKGLIITNP 200 (477)
Q Consensus 189 ~~~~k~vii~nP 200 (477)
..++.+|+ +|.
T Consensus 104 ~g~iD~lv-nnA 114 (288)
T 2x9g_A 104 FGRCDVLV-NNA 114 (288)
T ss_dssp HSCCCEEE-ECC
T ss_pred cCCCCEEE-ECC
Confidence 44677544 444
No 348
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=65.39 E-value=51 Score=30.31 Aligned_cols=102 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|+|+...=..+...|.+.|..|++..-.-......... ..+.++..+.+|-. |.+.+++++++..+.
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVR-----DPDMVQNTVSELIKV 101 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCC-----CHHHHHHHHHHHHHH
Confidence 4577776665544556667778888887765433222211111 11445666666532 578888888776655
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+-.....+. ..+.+++++..+
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 133 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITD 133 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHH
Confidence 557776554432222221 345566665554
No 349
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=64.87 E-value=17 Score=33.69 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=48.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.+++++++. .
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~-----d~~~v~~~~~~~----~ 85 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-AGQVEVRELDLQ-----DLSSVRRFADGV----S 85 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-SSEEEEEECCTT-----CHHHHHHHHHTC----C
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-cCCeeEEEcCCC-----CHHHHHHHHHhc----C
Confidence 345777776665555666778888988887765443334444433 667777777642 578888777643 2
Q ss_pred CeeEEEEeCC
Q 011801 191 NIKGLIITNP 200 (477)
Q Consensus 191 ~~k~vii~nP 200 (477)
++..| ++|.
T Consensus 86 ~iD~l-v~nA 94 (291)
T 3rd5_A 86 GADVL-INNA 94 (291)
T ss_dssp CEEEE-EECC
T ss_pred CCCEE-EECC
Confidence 56654 4444
No 350
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=64.69 E-value=45 Score=30.31 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=49.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
....+++|+|+...=..+...|.+.|..|++..-.-..... .++.. |.++..+.+|-. |.+.+++++++..
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-GAKVHTFVVDCS-----NREDIYSSAKKVK 103 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc-CCeEEEEEeeCC-----CHHHHHHHHHHHH
Confidence 34467777666554456666777888888776543222222 12222 556666666532 5778888887765
Q ss_pred HhCCCeeEEEEe
Q 011801 187 EASINIKGLIIT 198 (477)
Q Consensus 187 ~~~~~~k~vii~ 198 (477)
+...++.+|+.+
T Consensus 104 ~~~g~iD~li~~ 115 (272)
T 1yb1_A 104 AEIGDVSILVNN 115 (272)
T ss_dssp HHTCCCSEEEEC
T ss_pred HHCCCCcEEEEC
Confidence 555567765544
No 351
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=64.45 E-value=56 Score=29.19 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.... ..++.. +.++..+.+|-. |.+++++++++..+
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME-GHDVSSVVMDVT-----NTESVQNAVRSVHE 86 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEecCC-----CHHHHHHHHHHHHH
Confidence 345777766555445566677778888877654322221 222222 556666666532 57788888776555
Q ss_pred hCCCeeEEEEeCCCCC-ccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNP-LGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NP-tG~--~~~~~~l~~l~~ 218 (477)
...++.+|+.+-...+ .+. -.+.+++++..+
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~ 120 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVD 120 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHH
Confidence 4446776554432222 222 245556655544
No 352
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=64.36 E-value=80 Score=28.28 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCC--CeEEEcCCCccchHHHHh----hhC
Q 011801 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPG--DAFLVPSPYYAAFDRDLS----WRT 156 (477)
Q Consensus 83 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~G--d~vlv~~P~y~~~~~~~~----~~~ 156 (477)
.+..++.+..+.|.+++..... ..+++++|+++.=++++...+..++..|. ..++......+....... ...
T Consensus 105 ~d~~~i~~~~~~i~~li~~~~~--~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~~~~~~~~~~ 182 (246)
T 4f21_A 105 VDVEGINSSIAKVNKLIDSQVN--QGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNFKGKITSINK 182 (246)
T ss_dssp SCCC-CHHHHHHHHHHHHHHHH--C-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHHSTTCCGGGT
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--cCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcccccccccccccc
Confidence 3456777777777777654322 12688999997655555555544444332 345554444333222111 111
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
+..+.-+.-+. +--+..+.-++..+..++.+.++....+. ..|..++.++++.+.+|.++
T Consensus 183 ~~Pvl~~HG~~--D~vVp~~~~~~~~~~L~~~g~~v~~~~y~----g~gH~i~~~~l~~~~~fL~k 242 (246)
T 4f21_A 183 GLPILVCHGTD--DQVLPEVLGHDLSDKLKVSGFANEYKHYV----GMQHSVCMEEIKDISNFIAK 242 (246)
T ss_dssp TCCEEEEEETT--CSSSCHHHHHHHHHHHHTTTCCEEEEEES----SCCSSCCHHHHHHHHHHHHH
T ss_pred CCchhhcccCC--CCccCHHHHHHHHHHHHHCCCCeEEEEEC----CCCCccCHHHHHHHHHHHHH
Confidence 34455555432 33456776666666666666666544432 24667889999999998875
No 353
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=63.86 E-value=79 Score=28.00 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|+|+...=..+...|.+.|..|++..-.-.... ..++.. +.++..+.+|-. |.+.+++++++..+
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDIT-----SEQELSALADFAIS 84 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 345666665544444556677888888777653322211 122222 556666666532 57788888776554
Q ss_pred hCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLG-TTLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~ 218 (477)
...++.+|+.+-...+.+ .-.+.+++++..+
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~ 116 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYE 116 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHH
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
Confidence 444677655443222211 1345666665554
No 354
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=63.77 E-value=61 Score=29.83 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=55.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhh----hCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSW----RTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~----~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
...+++|+|+...=..+...|.+.|..|++..-.-...... +.. ..+.++..+.+|-. +.+.++++++
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~ 92 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR-----NEEEVNNLVK 92 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT-----CHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCC-----CHHHHHHHHH
Confidence 34577776655544556667778888877765332222211 111 02556667776642 5778888777
Q ss_pred HHHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 184 RAQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
...+...++.+|+.+--..+.+ ...+.+++++..+
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 129 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLE 129 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 6554444677655432222222 2245566666554
No 355
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=63.61 E-value=71 Score=28.63 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=53.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.. ....... + + ..+.+|-. |.+++++++++..+...+
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~-~-~-~~~~~D~~-----~~~~~~~~~~~~~~~~g~ 77 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-G-G-AFFQVDLE-----DERERVRFVEEAAYALGR 77 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-T-C-EEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh-h-C-CEEEeeCC-----CHHHHHHHHHHHHHHcCC
Confidence 457777666555456667777888887765433222 3323322 2 2 44555432 567788877766544446
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+--..+.+. ..+.+++++..+
T Consensus 78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 106 (256)
T 2d1y_A 78 VDVLVNNAAIAAPGSALTVRLPEWRRVLE 106 (256)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 775444322222232 245666666655
No 356
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=63.51 E-value=49 Score=30.28 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=55.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh--CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR--TGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~--~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......... .| ++..+.+|-. |.+++++++++..+..
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~-----d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLS-----SEAGARRLAQALGELS 103 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTT-----SHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCC-----CHHHHHHHHHHHHHhc
Confidence 45777766555445566677788888877654332222222111 13 5555665532 5788888887766555
Q ss_pred CCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 190 INIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 190 ~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.++.+|+ +|.. ...+. -.+.++++++.+
T Consensus 104 g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 134 (276)
T 2b4q_A 104 ARLDILV-NNAGTSWGAALESYPVSGWEKVMQ 134 (276)
T ss_dssp SCCSEEE-ECCCCCCCCCTTSCCSHHHHHHHH
T ss_pred CCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 5677654 4442 22222 245566666655
No 357
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=63.50 E-value=62 Score=29.09 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=54.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh----CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR----TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~----~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......+.. .+.++..+.+|-. |.+++++++++..+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIR-----EPGDIDRLFEKARD 82 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 45777766655445566677788888877643322222211111 0225566666532 57888888877655
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
... +..|+.+-...+.+. ..+.+++++..+
T Consensus 83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (260)
T 2z1n_A 83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYR 114 (260)
T ss_dssp TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 544 776554322222232 246666666655
No 358
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=63.42 E-value=67 Score=28.68 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HH-hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DL-SWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|..|++..-.-..... .+ ... +.++..+.+|-. |.+.+++++++..+
T Consensus 15 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~-----~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 15 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVS-----NTDIVTKTIQQIDA 88 (265)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCC-----CHHHHHHHHHHHHH
Confidence 357777665544455666777788777765432222111 11 112 556666666532 57888888877655
Q ss_pred hCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
...++.+|+.+--....+ ...+.+++++..+
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYD 121 (265)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHH
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHh
Confidence 555677655432222222 1246666666554
No 359
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=63.26 E-value=50 Score=30.54 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|++.|..|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+
T Consensus 34 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 107 (291)
T 3cxt_A 34 GKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAA-GINAHGYVCDVT-----DEDGIQAMVAQIES 107 (291)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-TCCCEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 3457777666554456667777888888775433222221 12222 555556666532 57888888877665
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+ +|.. .+.+. -.+.++++++.+
T Consensus 108 ~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 140 (291)
T 3cxt_A 108 EVGIIDILV-NNAGIIRRVPMIEMTAAQFRQVID 140 (291)
T ss_dssp HTCCCCEEE-ECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred HcCCCcEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence 555677644 4432 22221 246666766655
No 360
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=63.25 E-value=56 Score=29.47 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=57.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|++.|..|++..-.-..... .+... |.++..+.+|-. |.+++++++++..+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVT-----SEEAVIGTVDSVVR 80 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TSCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 3457777766655556667788889887765433222221 22222 556777776642 57788877776655
Q ss_pred hCCCeeEEEEeCCCC-Cccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSN-PLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~N-PtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+.+--.. +.+. -.+.++++++.+
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 114 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLT 114 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHH
Confidence 444677554332222 2222 246666766655
No 361
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=63.22 E-value=65 Score=29.07 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++. ...-.... ..+... +.++..+.+|-. |.+.+++++++..+
T Consensus 27 k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~-----~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN-GGNGRLLSFDVA-----NREQCREVLEHEIA 100 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCceEEEEecCC-----CHHHHHHHHHHHHH
Confidence 356676666554456667788889888553 22222111 222223 556666776542 57888888876655
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
...++.+|+ +|.. ...+. ..+.+++++..+
T Consensus 101 ~~g~id~li-~nAg~~~~~~~~~~~~~~~~~~~~ 133 (267)
T 4iiu_A 101 QHGAWYGVV-SNAGIARDAAFPALSNDDWDAVIH 133 (267)
T ss_dssp HHCCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HhCCccEEE-ECCCCCCCCccccCCHHHHHHHHH
Confidence 555677654 4442 22222 346677776655
No 362
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=62.92 E-value=41 Score=30.75 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=54.9
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGV---QIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
..+++|.|+...=..+...|++.|..|++..-.-...... +... |. ++..+.+|-. |.+++++++++.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~ 80 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVT-----TEDGQDQIINST 80 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTT-----SHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcceEEEEecCC-----CHHHHHHHHHHH
Confidence 3566666655544556667778898887764332222221 2222 33 5666666632 577888887766
Q ss_pred HHhCCCeeEEEEeCCC-CCcc------cCCCHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS-NPLG------TTLDRDTLKSLVS 218 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NPtG------~~~~~~~l~~l~~ 218 (477)
.+.-.++.+|+ +|.. .+.+ .-.+.++++++.+
T Consensus 81 ~~~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T 1xkq_A 81 LKQFGKIDVLV-NNAGAAIPDAFGTTGTDQGIDIYHKTLK 119 (280)
T ss_dssp HHHHSCCCEEE-ECCCCCCCCTTCCCGGGSCHHHHHHHHH
T ss_pred HHhcCCCCEEE-ECCCCCCCCCCCcccccCCHHHHHHHHH
Confidence 55444677554 4432 2222 2345666666655
No 363
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=62.91 E-value=61 Score=29.33 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=55.3
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-hH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA-FD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|+|+.+.=..+...|++.|-.|++..-.-.. .. ...... +.++..+.+|-. |.+.+++++++..+.
T Consensus 27 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 27 VAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA-GRDFKAYAVDVA-----DFESCERCAEKVLAD 100 (269)
T ss_dssp EEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT-TCCCEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc-CCceEEEEecCC-----CHHHHHHHHHHHHHH
Confidence 35555555544445667788899888776422221 11 112222 556666776642 578888888776555
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
-.++.+|+.+--....+. ..+.++++.+.+
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~ 132 (269)
T 3gk3_A 101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMR 132 (269)
T ss_dssp HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred cCCCCEEEECCCcCCCcchhhCCHHHHHHHHH
Confidence 456776554332222222 346667766655
No 364
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Probab=62.41 E-value=91 Score=30.81 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=50.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCccc---------------hHHHHhhhCCcEEEEEeccCCCCcccC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-PGDAFLVPSPYYAA---------------FDRDLSWRTGVQIVPVHCDISNNFKIT 174 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~---------------~~~~~~~~~g~~~~~v~~~~~~~f~i~ 174 (477)
+..+++|.|+++-=..+...|+. .|-.|++..-.-.. +...++.. |.+...+.+|-. +
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~-G~~a~~i~~Dvt-----d 134 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA-GLYSKSINGDAF-----S 134 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT-TCCEEEEESCTT-----S
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc-CCcEEEEEecCC-----C
Confidence 44566676665544455566777 78777664211111 12334444 888888888743 5
Q ss_pred HHHHHHHHHHHHHhC-CCeeEEEEeCC
Q 011801 175 REALEAAYERAQEAS-INIKGLIITNP 200 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~-~~~k~vii~nP 200 (477)
.++++++++...++- .++.++ ++|.
T Consensus 135 ~~~v~~~v~~i~~~~~G~IDiL-VNNA 160 (422)
T 3s8m_A 135 DAARAQVIELIKTEMGGQVDLV-VYSL 160 (422)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEE-EECC
T ss_pred HHHHHHHHHHHHHHcCCCCCEE-EEcC
Confidence 788888888776665 678854 4443
No 365
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=62.31 E-value=73 Score=28.23 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=55.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|-.|++..-. -..... .+... +.++..+.+|-. |.+++++++++..+
T Consensus 8 k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD-GGDAAFFAADLA-----TSEACQQLVDEFVA 81 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT-TCEEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHHHHH
Confidence 456776665544445556677788877765433 222222 22223 566777776642 57888888876655
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+.+-.. .+.+. ..+.++++.+.+
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~ 115 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMD 115 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHH
Confidence 44467765543222 23222 245555555544
No 366
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=62.28 E-value=50 Score=29.30 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=53.6
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
.+++|+|+...=..+...|.+.|..|++..-.-......... ..+.++..+.+|-. |.+.+++++++..+..
T Consensus 4 ~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~ 78 (250)
T 2cfc_A 4 VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVA-----DEGDVNAAIAATMEQF 78 (250)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCC-----CHHHHHHHHHHHHHHh
Confidence 466776655444455566777888777765433222221111 11445666666532 5778888877665544
Q ss_pred CCeeEEEEeCCCCCccc-----CCCHHHHHHHHH
Q 011801 190 INIKGLIITNPSNPLGT-----TLDRDTLKSLVS 218 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~-----~~~~~~l~~l~~ 218 (477)
.++.+|+.+-...+.+. ..+.+++++..+
T Consensus 79 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~ 112 (250)
T 2cfc_A 79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMA 112 (250)
T ss_dssp SCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHH
Confidence 46776554332222221 235566665554
No 367
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=62.13 E-value=50 Score=30.03 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-...........+ +..+.+|-. |.+++++++++..+.-.
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 81 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG--AVFILCDVT-----QEDDVKTLVSETIRRFG 81 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT--EEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--CeEEEcCCC-----CHHHHHHHHHHHHHHcC
Confidence 34577777666555566677888898887764332222222222213 444555532 57788887776655444
Q ss_pred CeeEEEEeCCC-C-Cccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-N-PLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-N-PtG~--~~~~~~l~~l~~ 218 (477)
++.+++ +|.. . +.+. -.+.++++++.+
T Consensus 82 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (270)
T 1yde_A 82 RLDCVV-NNAGHHPPPQRPEETSAQGFRQLLE 112 (270)
T ss_dssp CCCEEE-ECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCCCcccCCHHHHHHHHH
Confidence 677544 4442 2 2221 245666666655
No 368
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=61.99 E-value=47 Score=31.18 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=53.0
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+. .
T Consensus 84 ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~va~a-~ 137 (301)
T 1xky_A 84 VIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKP-------------------------SQEGMYQHFKAIAES-T 137 (301)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHHT-C
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-------------------------CHHHHHHHHHHHHHh-c
Confidence 7776654 5666655444322338999999988432 123344444333222 2
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+...++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 138 ~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnIvgiKds 174 (301)
T 1xky_A 138 PLPVMLYNVPG-RSIVQISVDTVVRLSE---IENIVAIKDA 174 (301)
T ss_dssp SSCEEEEECHH-HHSSCCCHHHHHHHHT---STTEEEEEEC
T ss_pred CCCEEEEeCcc-ccCCCCCHHHHHHHHc---CCCEEEEEcC
Confidence 46677888775 6899999888877764 3466655554
No 369
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=61.81 E-value=69 Score=29.09 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=54.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCC--cEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTG--VQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
..+++|+|+...=..+...|++.|-.|++..-.-..... .++.. | .++..+.+|-. |.+.+++++++..
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~-----~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLS-----NEEDILSMFSAIR 106 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhc-CCCceEEEEEecCC-----CHHHHHHHHHHHH
Confidence 457777665544455566677788888776433222221 12222 3 45666666532 5778887777655
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.-.++.+|+.+-...+.+. ..+.++++.+.+
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 140 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFN 140 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 44446776554332222222 235566665554
No 370
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=61.71 E-value=43 Score=30.50 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=44.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh-----hCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW-----RTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~-----~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
..+++|.|+...=..+...|.+.|..|++..-.-......... ..+.++..+.+|-. |.+.+++++++..
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~ 81 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT-----TDAGQDEILSTTL 81 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccC-----CHHHHHHHHHHHH
Confidence 3466666555444455667778888887754332222211111 11445666666532 5778888777665
Q ss_pred HhCCCeeEEEE
Q 011801 187 EASINIKGLII 197 (477)
Q Consensus 187 ~~~~~~k~vii 197 (477)
+.-.++.+|+.
T Consensus 82 ~~~g~id~lv~ 92 (278)
T 1spx_A 82 GKFGKLDILVN 92 (278)
T ss_dssp HHHSCCCEEEE
T ss_pred HHcCCCCEEEE
Confidence 54446775443
No 371
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=61.69 E-value=86 Score=28.38 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=56.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|+|+.+.=..+...|++.|..|++..-.-. .++.....++..+.+|-. |.+++++++++..+...+
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 87 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE----RLKALNLPNTLCAQVDVT-----DKYTFDTAITRAEKIYGP 87 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH----HHHTTCCTTEEEEECCTT-----CHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHhhcCCceEEEecCC-----CHHHHHHHHHHHHHHCCC
Confidence 45677776655555566778888887777643321 122211234555555532 578888888776655557
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.+|+.+--..+.+. ..+.++++++.+.
T Consensus 88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 117 (266)
T 3p19_A 88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDV 117 (266)
T ss_dssp EEEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 876544322233332 3466777766653
No 372
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=61.67 E-value=50 Score=29.04 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=50.8
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|+|+...=..+...|.+.|..|++..-.-.......... + ++..+.+|-. |.+.+++++++..+.-.++
T Consensus 7 ~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~D~~-----~~~~~~~~~~~~~~~~~~i 79 (234)
T 2ehd_A 7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-E-GALPLPGDVR-----EEGDWARAVAAMEEAFGEL 79 (234)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-T-TCEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-h-hceEEEecCC-----CHHHHHHHHHHHHHHcCCC
Confidence 4666666554444555667778888776543322222222222 1 2334444432 5777887777655443467
Q ss_pred eEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 193 KGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 193 k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
.+|+.+-...+.+. ..+.+++++..+
T Consensus 80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~ 107 (234)
T 2ehd_A 80 SALVNNAGVGVMKPVHELTLEEWRLVLD 107 (234)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 76554322222221 245566665554
No 373
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=61.65 E-value=62 Score=28.14 Aligned_cols=107 Identities=7% Similarity=0.078 Sum_probs=60.8
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCC--CeEEEcCCCccchH---HHH-hhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPG--DAFLVPSPYYAAFD---RDL-SWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~G--d~vlv~~P~y~~~~---~~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
+++++|++..-++++...+..++..|. ..|+......+... ... ....+..+.-+.-+. +-.+..+..++..
T Consensus 97 i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~~~~~~~~~~~~Pvl~~hG~~--D~~vp~~~~~~~~ 174 (210)
T 4h0c_A 97 IPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELAIGNYKGDFKQTPVFISTGNP--DPHVPVSRVQESV 174 (210)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCCGGGCCBCCTTCEEEEEEEES--CTTSCHHHHHHHH
T ss_pred CChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhhhhhhhhhccCCceEEEecCC--CCccCHHHHHHHH
Confidence 678999997777777666555554443 34554443332211 111 111134454444332 3346677777766
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~ 221 (477)
+..++.+.++....+.. .|..++.++++.+.+|..
T Consensus 175 ~~L~~~g~~v~~~~ypg----~gH~i~~~el~~i~~wL~ 209 (210)
T 4h0c_A 175 TILEDMNAAVSQVVYPG----RPHTISGDEIQLVNNTIL 209 (210)
T ss_dssp HHHHHTTCEEEEEEEET----CCSSCCHHHHHHHHHTTT
T ss_pred HHHHHCCCCeEEEEECC----CCCCcCHHHHHHHHHHHc
Confidence 66666666666555542 255678999999888754
No 374
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=61.58 E-value=21 Score=32.25 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=55.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+.+.=..+...|++.|..|++..-. -....... +.++..+.+|-. |.++++++++...+ ..+
T Consensus 10 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~---~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~-~g~ 79 (257)
T 3tl3_A 10 AVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVADL-GDRARFAAADVT-----DEAAVASALDLAET-MGT 79 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS---CHHHHHHT-CTTEEEEECCTT-----CHHHHHHHHHHHHH-HSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc---hHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHHHHH-hCC
Confidence 456666666554455667788888887776542 22233333 666667776643 57778777776544 346
Q ss_pred eeEEEEeCCC-CCccc------CCCHHHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLGT------TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~-NPtG~------~~~~~~l~~l~~~ 219 (477)
+.+++ +|.. .+.+. ..+.+++++..+.
T Consensus 80 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~v 113 (257)
T 3tl3_A 80 LRIVV-NCAGTGNAIRVLSRDGVFSLAAFRKIVDI 113 (257)
T ss_dssp EEEEE-ECGGGSHHHHHHHHTCCCSHHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCcccccccccCCHHHHHHHHHH
Confidence 77544 4332 11111 1566777766653
No 375
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=61.56 E-value=41 Score=30.59 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=56.1
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccch---HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAF---DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|++.|..|++. .-.-... ...+... +.++..+.+|-. |.+.+++++++..+.
T Consensus 28 ~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES-GGEAVAIPGDVG-----NAADIAAMFSAVDRQ 101 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc-CCcEEEEEcCCC-----CHHHHHHHHHHHHHh
Confidence 45666555544455566788889888664 3222222 2223333 677888887643 577888888776555
Q ss_pred CCCeeEEEEeCCC-CCc-c--cCCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPL-G--TTLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPt-G--~~~~~~~l~~l~~ 218 (477)
-.++.+|+ .|.. ... + .-.+.+++++..+
T Consensus 102 ~g~id~li-~nAg~~~~~~~~~~~~~~~~~~~~~ 134 (272)
T 4e3z_A 102 FGRLDGLV-NNAGIVDYPQRVDEMSVERIERMLR 134 (272)
T ss_dssp HSCCCEEE-ECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCCCEEE-ECCCCCCCCCChhhCCHHHHHHHHh
Confidence 45677654 4432 211 2 1246666666655
No 376
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=61.42 E-value=61 Score=29.71 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=59.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|++.|-.|++..-.-...... +... |.++..+.+|-. |.+.+++++++..+.
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-GGEAAALAGDVG-----DEALHEALVELAVRR 82 (280)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT-TCCEEECCCCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHHHH
Confidence 3466666655444556677888898888876543332222 2222 566777776642 577888887766555
Q ss_pred CCCeeEEEEeCCC-C-Cccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-N-PLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-N-PtG~--~~~~~~l~~l~~~ 219 (477)
-.++.++ ++|.. . +.+. ..+.++++++.+.
T Consensus 83 ~g~iD~l-vnnAg~~~~~~~~~~~~~~~~~~~~~v 116 (280)
T 3tox_A 83 FGGLDTA-FNNAGALGAMGEISSLSVEGWRETLDT 116 (280)
T ss_dssp HSCCCEE-EECCCCCCSCSCGGGCCHHHHHHHHHH
T ss_pred cCCCCEE-EECCCCCCCCCChhhCCHHHHHHHHHH
Confidence 4567754 44442 1 2232 3567777777663
No 377
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=61.28 E-value=70 Score=28.82 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=53.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
..+++|.|+...=..+...|++.|..|++..-.-.......... ...++..+.+|-. |.+.+++++++..+...
T Consensus 17 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~~ 91 (278)
T 2bgk_A 17 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVT-----KDEDVRNLVDTTIAKHG 91 (278)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCC-----CHHHHHHHHHHHHHHcC
Confidence 45777776655555566677778888777643322122222211 0114555665532 57788887776554444
Q ss_pred CeeEEEEeCCCCC---cc--cCCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNP---LG--TTLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NP---tG--~~~~~~~l~~l~~ 218 (477)
++.+|+. |..-. .+ ...+.+++++..+
T Consensus 92 ~id~li~-~Ag~~~~~~~~~~~~~~~~~~~~~~ 123 (278)
T 2bgk_A 92 KLDIMFG-NVGVLSTTPYSILEAGNEDFKRVMD 123 (278)
T ss_dssp CCCEEEE-CCCCCCSSCSSTTTCCHHHHHHHHH
T ss_pred CCCEEEE-CCcccCCCCCChhhCCHHHHHHHHH
Confidence 6776553 33211 12 2245566666555
No 378
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=61.16 E-value=30 Score=32.53 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=51.5
Q ss_pred cEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..|+ .++++.+-.+-.-.-|.+++..|+|.... .+.+.+.++...+..
T Consensus 82 pViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s-------------------------~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 82 KLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFS-------------------------FEEHCDHYRAIIDSA 136 (303)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC-------------------------HHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCC-------------------------HHHHHHHHHHHHHhC
Confidence 37776654 56666554432223389999999885321 122222222221111
Q ss_pred CC-eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 IN-IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~-~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
. ...++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 137 -~~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnIvgiK~s 174 (303)
T 2wkj_A 137 -DGLPMVVYNIPA-LSGVKLTLDQINTLVT---LPGVGALXQT 174 (303)
T ss_dssp -TTCCEEEEECHH-HHCCCCCHHHHHHHHT---STTEEEEEEC
T ss_pred -CCCCEEEEeCcc-ccCCCCCHHHHHHHhc---CCCEEEEeCC
Confidence 3 6677888776 6899999888877764 3466555444
No 379
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=61.16 E-value=72 Score=29.07 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=55.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|-.|++..-.-.. ....+... |.++..+.+|-. +.+++++++++..+
T Consensus 30 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 30 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-GSDAACVKANVG-----VVEDIVRMFEEAVK 103 (283)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh-CCCeEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 346666655544455667778889887775432211 11222333 666777776642 56777777776554
Q ss_pred hCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+ +|.. ...+. -.+.++++++.+
T Consensus 104 ~~g~iD~lv-~~Ag~~~~~~~~~~~~~~~~~~~~ 136 (283)
T 1g0o_A 104 IFGKLDIVC-SNSGVVSFGHVKDVTPEEFDRVFT 136 (283)
T ss_dssp HHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEE-ECCCcCCCCCcccCCHHHHHHHHH
Confidence 444677544 4442 22222 246667766665
No 380
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=60.97 E-value=41 Score=31.22 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=56.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGV---QIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
..+++|.|+...=..+...|.+.|..|++..-.-...... +... |. ++..+.+|-. |.+++++++++.
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~ 100 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVT-----EASGQDDIINTT 100 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTT-----SHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEecCCC-----CHHHHHHHHHHH
Confidence 3466666655544566677888898887765432222221 2222 33 5666666532 577788877766
Q ss_pred HHhCCCeeEEEEeCCCCCccc----CCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPSNPLGT----TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~----~~~~~~l~~l~~~ 219 (477)
.+.-.++.+|+.+-.....+. -.+.++++++.+.
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~v 138 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL 138 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhH
Confidence 554446776544322222222 3466667666553
No 381
>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*
Probab=60.57 E-value=1.2e+02 Score=29.88 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCcEEEeCChHHHHHH--HHHHhcCCCCeEEEcCCCc---------------cchHHHHhhhCCcEEEEEeccCCCCccc
Q 011801 111 PDRIVMGGGATGANEL--IMFCLANPGDAFLVPSPYY---------------AAFDRDLSWRTGVQIVPVHCDISNNFKI 173 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~--i~~~l~~~Gd~vlv~~P~y---------------~~~~~~~~~~~g~~~~~v~~~~~~~f~i 173 (477)
...+++|.|+++-=.. +...|...|-.|++..-.- ......++.. |.++..+.+|-.
T Consensus 60 gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvt----- 133 (418)
T 4eue_A 60 PKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK-GLVAKNFIEDAF----- 133 (418)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT-TCCEEEEESCTT-----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc-CCcEEEEEeeCC-----
Confidence 3446666655433333 4566777787776543211 1112223334 778888887743
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 174 TREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+.+.+++++++..+.-.++.+++.
T Consensus 134 d~~~v~~~v~~i~~~~G~IDiLVn 157 (418)
T 4eue_A 134 SNETKDKVIKYIKDEFGKIDLFVY 157 (418)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 578888888877766667876543
No 382
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=60.07 E-value=29 Score=32.40 Aligned_cols=90 Identities=29% Similarity=0.428 Sum_probs=52.0
Q ss_pred cEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+..
T Consensus 71 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 71 QVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKP-------------------------TQEGLRKHFGKVAESI 125 (289)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHHHC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-------------------------CHHHHHHHHHHHHHhc
Confidence 37776554 5666655443222338999999988532 1233333333322222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|.. ||..++.+.+.+|++ +-.|+.=|=|.
T Consensus 126 -~lPiilYn~P~~-tg~~l~~~~~~~La~--~~pnivgiK~s 163 (289)
T 2yxg_A 126 -NLPIVLYNVPSR-TAVNLEPKTVKLLAE--EYSNISAVKEA 163 (289)
T ss_dssp -SSCEEEEECHHH-HSCCCCHHHHHHHHH--HCTTEEEEEEC
T ss_pred -CCCEEEEeCccc-cCcCCCHHHHHHHHH--hCCCEEEEEeC
Confidence 466778887764 899999888887762 12455545443
No 383
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=59.83 E-value=54 Score=30.53 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=51.6
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+..
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~ia~a~- 125 (292)
T 2vc6_A 72 VIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKP-------------------------TQEGIYQHFKAIDAAS- 125 (292)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHHHC-
T ss_pred EEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------------------CHHHHHHHHHHHHHhC-
Confidence 6665554 5666655444322338999999988532 1233333333222222
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|. .||..++.+.+.+|++- -.|+.=|=|.
T Consensus 126 ~lPiilYn~P~-~tg~~l~~~~~~~La~~--~pnIvgiK~s 163 (292)
T 2vc6_A 126 TIPIIVYNIPG-RSAIEIHVETLARIFED--CPNVKGVXDA 163 (292)
T ss_dssp SSCEEEEECHH-HHSCCCCHHHHHHHHHH--CTTEEEEEEC
T ss_pred CCCEEEEeCcc-ccCcCCCHHHHHHHHhh--CCCEEEEecC
Confidence 45677777665 58999998887777531 2466555453
No 384
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=59.70 E-value=11 Score=40.86 Aligned_cols=26 Identities=12% Similarity=0.404 Sum_probs=23.6
Q ss_pred CcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 203 PLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 203 PtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
|.|-.++.+++++|++.|++++|-||
T Consensus 392 ~~~g~YT~~direIv~YA~~rgI~VI 417 (858)
T 1c7s_A 392 VYGGFFSRQDYIDIIKYAQARQIEVI 417 (858)
T ss_dssp CEECCBCHHHHHHHHHHHHTTTCEEE
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45678999999999999999999988
No 385
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=59.20 E-value=38 Score=31.67 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=51.4
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+..
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~va~a~- 125 (294)
T 2ehh_A 72 VIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKP-------------------------TQRGLYEHFKTVAQEV- 125 (294)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-------------------------CHHHHHHHHHHHHHhc-
Confidence 7776554 5666655444322338999999988532 1233333333322222
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+...++.++|. .||..++.+.+.+|++ +-.|+.=|=|.
T Consensus 126 ~lPiilYn~P~-~tg~~l~~~~~~~La~--~~pnivgiKds 163 (294)
T 2ehh_A 126 DIPIIIYNIPS-RTCVEISVDTMFKLAS--ECENIVASKES 163 (294)
T ss_dssp CSCEEEEECHH-HHSCCCCHHHHHHHHH--HCTTEEEEEEC
T ss_pred CCCEEEEeCCc-ccCcCCCHHHHHHHHh--hCCCEEEEEeC
Confidence 45677888775 3899999888887762 12355545443
No 386
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=58.92 E-value=61 Score=29.31 Aligned_cols=95 Identities=12% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.. +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~~g 73 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG---------EAKYDHIECDVT-----NPDQVKASIDHIFKEYG 73 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC---------SCSSEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc---------CCceEEEEecCC-----CHHHHHHHHHHHHHHcC
Confidence 3457777766655556667788888887765322111 223334444432 56778887776655444
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+|+.+--..+.+. ..+.++++++.+.
T Consensus 74 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 104 (264)
T 2dtx_A 74 SISVLVNNAGIESYGKIESMSMGEWRRIIDV 104 (264)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6776554322223332 2466677666653
No 387
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=58.71 E-value=52 Score=29.55 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=55.3
Q ss_pred EEEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 114 IVMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
+++|.|+.+.=..+...|... |-.|++..-.-.......+.. |.++..+.+|-. |.+.+++++++..+...+
T Consensus 5 ~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-GDRFFYVVGDIT-----EDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp EEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-GGGEEEEESCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred EEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-CCceEEEECCCC-----CHHHHHHHHHHHHHhcCC
Confidence 566655544334445556554 456665444333333333334 666777777643 578888888776655557
Q ss_pred eeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
+..++.+--. .+.+. ..+.+++++..+.
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDI 109 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHH
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHH
Confidence 7765543222 23232 3566777776663
No 388
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=58.59 E-value=48 Score=29.89 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|+|+...=..+...|.+.|..|++..- .-.... ..++.. |.++..+.+|-. |.+.+++++++..+
T Consensus 22 k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 22 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL-GAQGVAIQADIS-----KPSEVVALFDKAVS 95 (274)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 35666665544444555667778877776543 221111 122222 556666666532 56778887776554
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+-.++.+|+.+-...+.+. ..+.+++++..+
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 128 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFN 128 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHH
Confidence 4446775543322222221 245555555544
No 389
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=58.25 E-value=54 Score=29.72 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=58.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+++-=..+...|.+.|-.|++.+-.-.... ... +.++..+.+|-+ |.+++++++++. .+
T Consensus 12 K~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~---~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~----g~ 78 (242)
T 4b79_A 12 QQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVH---APR-HPRIRREELDIT-----DSQRLQRLFEAL----PR 78 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTT---SCC-CTTEEEEECCTT-----CHHHHHHHHHHC----SC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHh---hhh-cCCeEEEEecCC-----CHHHHHHHHHhc----CC
Confidence 35677777666556666788899988887664322211 122 556777777643 567888877653 36
Q ss_pred eeEEEEeCCC-CCcccCCCHHHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLGTTLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~-NPtG~~~~~~~l~~l~~~ 219 (477)
+.. +++|.. +.....++.++++++.++
T Consensus 79 iDi-LVNNAGi~~~~~~~~~~~w~~~~~v 106 (242)
T 4b79_A 79 LDV-LVNNAGISRDREEYDLATFERVLRL 106 (242)
T ss_dssp CSE-EEECCCCCCGGGGGSHHHHHHHHHH
T ss_pred CCE-EEECCCCCCCcccCCHHHHHHHHHH
Confidence 664 555552 333455677888888774
No 390
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=57.83 E-value=37 Score=31.68 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=50.9
Q ss_pred cEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..|+ .++++.+-.+-.-.-|.+++..|+|.... .+.+.+.++...+..
T Consensus 75 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~-------------------------~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 75 ALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS-------------------------FPEIKHYYDTIIAET 129 (293)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC-------------------------HHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC-------------------------HHHHHHHHHHHHHhC
Confidence 37776554 66666554442223389999999985321 122222222211111
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+...++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 130 -~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnIvgiK~s 166 (293)
T 1f6k_A 130 -GSNMIVYSIPF-LTGVNMGIEQFGELYK---NPKVLGVKFT 166 (293)
T ss_dssp -CCCEEEEECHH-HHCCCCCHHHHHHHHT---STTEEEEEEC
T ss_pred -CCCEEEEECcc-ccCcCCCHHHHHHHhc---CCCEEEEEEC
Confidence 45677777775 5899999888877764 3466555454
No 391
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=57.47 E-value=27 Score=32.80 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=52.2
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+..
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~va~a~- 125 (297)
T 2rfg_A 72 VIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRP-------------------------SQEGLYQHFKMVHDAI- 125 (297)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCC-------------------------CHHHHHHHHHHHHHHC-
T ss_pred EEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-------------------------CHHHHHHHHHHHHHhc-
Confidence 6676554 5666655444322338999999998532 1233333333322222
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+...++.++|.. ||..++.+.+.+|++ -.|+.=|=|.
T Consensus 126 ~lPiilYn~P~~-tg~~l~~~~~~~La~---~pnIvgiKds 162 (297)
T 2rfg_A 126 DIPIIVYNIPPR-AVVDIKPETMARLAA---LPRIVGVKDA 162 (297)
T ss_dssp SSCEEEEECHHH-HSCCCCHHHHHHHHT---STTEEEEEEC
T ss_pred CCCEEEEeCccc-cCCCCCHHHHHHHHc---CCCEEEEEeC
Confidence 466778887763 899999888887764 3466555444
No 392
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=57.43 E-value=99 Score=27.07 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=52.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCC--CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 113 RIVMGGGATGANELIMFCLANPG--DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~G--d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.+++|.|+...=..+...|.+.| ..|++..-.-......... .+.++..+.+|-. +.+.+++++++..+.-.
T Consensus 5 ~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g 78 (250)
T 1yo6_A 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-KDSRVHVLPLTVT-----CDKSLDTFVSKVGEIVG 78 (250)
T ss_dssp EEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-CCTTEEEEECCTT-----CHHHHHHHHHHHHHHHG
T ss_pred EEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-cCCceEEEEeecC-----CHHHHHHHHHHHHHhcC
Confidence 46777665544456667777888 7777654433222222222 1445556666532 56777777766544322
Q ss_pred --CeeEEEEeCCCCC-ccc--CCCHHHHHHHHH
Q 011801 191 --NIKGLIITNPSNP-LGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 --~~k~vii~nP~NP-tG~--~~~~~~l~~l~~ 218 (477)
++.+|+.+-...+ .+. ..+.++++...+
T Consensus 79 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 111 (250)
T 1yo6_A 79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLD 111 (250)
T ss_dssp GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHH
T ss_pred CCCCcEEEECCcccCCCcccccCCHHHHHHHHH
Confidence 5676554432222 232 245566665554
No 393
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=57.31 E-value=1.1e+02 Score=27.69 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=56.7
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++...+++|.|+.+.=..+...|++.|..|++..-. ..... .+... |.++..+.+|-. |.+.++++.+..
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~ 101 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG-GGSAEAVVADLA-----DLEGAANVAEEL 101 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT-TCEEEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc-CCcEEEEEecCC-----CHHHHHHHHHHH
Confidence 344567777776655556667788889888776522 22222 22223 667777777643 466666654333
Q ss_pred HHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
.+. .++.+|+ +|.. .+.+. ..+.+++++..+.
T Consensus 102 ~~~-g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~v 136 (273)
T 3uf0_A 102 AAT-RRVDVLV-NNAGIIARAPAEEVSLGRWREVLTV 136 (273)
T ss_dssp HHH-SCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred Hhc-CCCcEEE-ECCCCCCCCCchhCCHHHHHHHHHH
Confidence 222 3677544 4442 22222 3466777776653
No 394
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=57.16 E-value=43 Score=34.17 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=59.4
Q ss_pred cCCCcEEEeCChHHHHHH-HHHHhcCCCCe-EEEc-CCC----------------ccchHHHHhhhCCcEEEEEeccCCC
Q 011801 109 FDPDRIVMGGGATGANEL-IMFCLANPGDA-FLVP-SPY----------------YAAFDRDLSWRTGVQIVPVHCDISN 169 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~-i~~~l~~~Gd~-vlv~-~P~----------------y~~~~~~~~~~~g~~~~~v~~~~~~ 169 (477)
+.++.+++..|++.+|-. +...|.+.|.. |++. .-. -......++.. |.++..+.+|-.
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~~~~Dvt- 325 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL-GATATVVTCDLT- 325 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH-TCEEEEEECCTT-
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc-CCEEEEEECCCC-
Confidence 455666666666656554 44556677765 4443 222 11222334445 888888888743
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
|.+++++++++.. +..++.+||.+--....+. -++.++++++++.
T Consensus 326 ----d~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~ 372 (525)
T 3qp9_A 326 ----DAEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTA 372 (525)
T ss_dssp ----SHHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHH
Confidence 5788888887654 3446776554433222232 3566777776653
No 395
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=57.16 E-value=72 Score=28.47 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=52.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh--CC-------cEEEEEeccCCCCcccCHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR--TG-------VQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~--~g-------~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+++|+|+...=..+...|++.|..|++..-.-.......... .| .++..+.+|-. |.+.+++++
T Consensus 8 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~ 82 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVS-----EARAARCLL 82 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTT-----SHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCC-----CHHHHHHHH
Confidence 45777766555445566677778888777654332222222111 02 23444555432 567788877
Q ss_pred HHHHHhCCCe-eEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 183 ERAQEASINI-KGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 183 ~~~~~~~~~~-k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
+...+.-.++ .+|+ +|.. .+.+. ..+.+++++..+
T Consensus 83 ~~~~~~~g~i~d~vi-~~Ag~~~~~~~~~~~~~~~~~~~~ 121 (264)
T 2pd6_A 83 EQVQACFSRPPSVVV-SCAGITQDEFLLHMSEDDWDKVIA 121 (264)
T ss_dssp HHHHHHHSSCCSEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEE-ECCCcCCCcchhhCCHHHHHHHHh
Confidence 7655443455 6544 4442 22222 245666666554
No 396
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=56.87 E-value=53 Score=30.59 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=50.5
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 114 IVMGGGA---TGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
|++..|+ .++++.+-.+ .+-| |.+++..|+|... +.+.+.+.++...+.
T Consensus 73 viaGvg~~~t~~ai~la~~a-~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~ia~a- 125 (292)
T 2ojp_A 73 VIAGTGANATAEAISLTQRF-NDSGIVGCLTVTPYYNRP-------------------------SQEGLYQHFKAIAEH- 125 (292)
T ss_dssp EEEECCCSSHHHHHHHHHHT-TTSSCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHTT-
T ss_pred EEEecCCccHHHHHHHHHHH-HhcCCCEEEECCCCCCCC-------------------------CHHHHHHHHHHHHHh-
Confidence 7776664 5555554333 3444 8999999988432 123344444433222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
.....++.++|. .||..++.+.+.+|++ -.|+.=|=|
T Consensus 126 ~~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnivgiK~ 162 (292)
T 2ojp_A 126 TDLPQILYNVPS-RTGCDLLPETVGRLAK---VKNIIGIXE 162 (292)
T ss_dssp CSSCEEEECCHH-HHSCCCCHHHHHHHHT---STTEEEC-C
T ss_pred cCCCEEEEeCcc-hhccCCCHHHHHHHHc---CCCEEEEeC
Confidence 245677777665 6899999888877764 345544433
No 397
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=56.84 E-value=89 Score=27.90 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-...... +....+.++..+.+|-.. -|.+.+++++++..+
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLT---CTSENCQQLAQRIAV 88 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTT---CCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEeccc---CCHHHHHHHHHHHHH
Confidence 34567776665544556677888898888765443322222 111112244445544211 257788888877666
Q ss_pred hCCCeeEEEEeCCC--CCcc--cCCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS--NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~--NPtG--~~~~~~~l~~l~~~ 219 (477)
...++.+++ +|.. .+.+ ...+.++++++.+.
T Consensus 89 ~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~ 123 (252)
T 3f1l_A 89 NYPRLDGVL-HNAGLLGDVCPMSEQNPQVWQDVMQV 123 (252)
T ss_dssp HCSCCSEEE-ECCCCCCCCSCTTTCCHHHHHHHHHH
T ss_pred hCCCCCEEE-ECCccCCCCCCcccCCHHHHHHHHhh
Confidence 666777654 4442 2222 23566777766653
No 398
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=56.75 E-value=1e+02 Score=27.02 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=54.5
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|.+.|..|++. .-.-.... ..++.. +.++..+.+|-. +.+++++++++..+.
T Consensus 3 ~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~ 76 (244)
T 1edo_A 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY-GGQAITFGGDVS-----KEADVEAMMKTAIDA 76 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-TCEEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCcEEEEeCCCC-----CHHHHHHHHHHHHHH
Confidence 35666555444445556677788887763 33222111 122323 567777776642 578888888776555
Q ss_pred CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+--..+.+. ..+.+++++..+
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (244)
T 1edo_A 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVID 108 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCcCcccCCHHHHHHHHH
Confidence 556776554322222221 245566665554
No 399
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=56.52 E-value=48 Score=30.47 Aligned_cols=102 Identities=20% Similarity=0.302 Sum_probs=56.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH---hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL---SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~---~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|++.|-.|++..-.-....... ....+..+..+.+|-. |.+++++++++..+.
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVG-----DPDQVAALFAAVRAE 108 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 34566655554444555677888988887654433222222 1111223455666532 578888888776655
Q ss_pred CCCeeEEEEeCCC-C-Ccc--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-N-PLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-N-PtG--~~~~~~~l~~l~~~ 219 (477)
..++.+|+ +|.. . +.+ ...+.++++++.+.
T Consensus 109 ~g~iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~~v 142 (281)
T 4dry_A 109 FARLDLLV-NNAGSNVPPVPLEEVTFEQWNGIVAA 142 (281)
T ss_dssp HSCCSEEE-ECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEE-ECCCCCCCCCCcccCCHHHHHHHHHH
Confidence 55777644 4442 2 212 23567777777663
No 400
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=56.43 E-value=63 Score=28.86 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=54.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|...|..|++..- .-.... ..+... +.++..+.+|-. +.+.+++++++..+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAVKGDVT-----VESDVINLVQSAIK 81 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEECCCC-----CHHHHHHHHHHHHH
Confidence 35666666554444555667778887776543 222111 122223 566777776642 56777777776554
Q ss_pred hCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
...++.+|+.+-...+.+ ...+.+++++..+
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVID 114 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 444677655433222222 1245566665554
No 401
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=56.32 E-value=57 Score=29.49 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|++.|..|++..-.-.. .. ..++..+.+|-. |.+++++++++..+.-.+
T Consensus 29 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~------~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP------SA-DPDIHTVAGDIS-----KPETADRIVREGIERFGR 96 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC------CS-STTEEEEESCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh------cc-cCceEEEEccCC-----CHHHHHHHHHHHHHHCCC
Confidence 456676666554455667788889888776533211 11 234555666532 578888888776655557
Q ss_pred eeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
+..++.+--..+.+ .-.+.++++++.+.
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 126 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGV 126 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 77655433222222 23466777776653
No 402
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=56.14 E-value=32 Score=30.96 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=53.8
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+++|.|+.+.=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+...++.
T Consensus 3 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~iD 76 (248)
T 3asu_A 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-GDNLYIAQLDVR-----NRAAIEEMLASLPAEWCNID 76 (248)
T ss_dssp EEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHTSCTTTCCCC
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCceEEEEcCCC-----CHHHHHHHHHHHHHhCCCCC
Confidence 566655544444555667778888877644322222222322 345556666532 57888888775544444677
Q ss_pred EEEEeCCCC--Ccc--cCCCHHHHHHHHHH
Q 011801 194 GLIITNPSN--PLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 194 ~vii~nP~N--PtG--~~~~~~~l~~l~~~ 219 (477)
++ ++|..- +.+ ...+.++++++.+.
T Consensus 77 ~l-vnnAg~~~~~~~~~~~~~~~~~~~~~~ 105 (248)
T 3asu_A 77 IL-VNNAGLALGMEPAHKASVEDWETMIDT 105 (248)
T ss_dssp EE-EECCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred EE-EECCCcCCCCCchhhCCHHHHHHHHHH
Confidence 54 444421 122 23566677766653
No 403
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=55.66 E-value=1e+02 Score=27.42 Aligned_cols=96 Identities=8% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-. .... ++ ..+.+|-. |.+++++++++..+...
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-----~~~~-~~--~~~~~D~~-----d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----QEQY-PF--ATEVMDVA-----DAAQVAQVCQRLLAETE 73 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC-----SSCC-SS--EEEECCTT-----CHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh-----hhcC-Cc--eEEEcCCC-----CHHHHHHHHHHHHHHcC
Confidence 345777766655445566777788888776543211 1212 43 33444422 57888888877665555
Q ss_pred CeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
++..|+.+--..+.+ ...+.+++++..+.
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 104 (250)
T 2fwm_X 74 RLDALVNAAGILRMGATDQLSKEDWQQTFAV 104 (250)
T ss_dssp CCCEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 777655432222222 23466777766653
No 404
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=55.31 E-value=68 Score=30.20 Aligned_cols=95 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCccCCCcEEEeCC---hHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 92 RQAVAKFMGKGRGGRVTFDPDRIVMGGG---ATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 92 r~aia~~~~~~~g~~~~~~~~~i~~t~G---~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
|.++.+...+.-+.+++ |++..| ..++++.+-.+-.-.+ |.+++..|+|.
T Consensus 62 r~~v~~~~~~~~~grvp-----ViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~--------------------- 115 (311)
T 3h5d_A 62 ELELFAAVQKVVNGRVP-----LIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYN--------------------- 115 (311)
T ss_dssp HHHHHHHHHHHSCSSSC-----EEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSS---------------------
T ss_pred HHHHHHHHHHHhCCCCc-----EEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCC---------------------
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+.+.+.+.+.++...+.. ....++.++|.. ||..++.+.+.+|++
T Consensus 116 ----~~s~~~l~~~f~~va~a~-~lPiilYn~P~~-tg~~l~~~~~~~La~ 160 (311)
T 3h5d_A 116 ----KPSQEGMYQHFKAIADAS-DLPIIIYNIPGR-VVVELTPETMLRLAD 160 (311)
T ss_dssp ----CCCHHHHHHHHHHHHHSC-SSCEEEEECHHH-HSSCCCHHHHHHHHT
T ss_pred ----CCCHHHHHHHHHHHHHhC-CCCEEEEecccc-cCCCCCHHHHHHHhc
No 405
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=55.27 E-value=42 Score=32.03 Aligned_cols=88 Identities=23% Similarity=0.227 Sum_probs=51.7
Q ss_pred EEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..| ..++++.+-.+-.-.-|.|++..|+|... +.+.+.+.++...+..
T Consensus 106 ViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~-------------------------s~~~l~~~f~~VA~a~- 159 (332)
T 2r8w_A 106 LMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPL-------------------------TQEEAYHHFAAVAGAT- 159 (332)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCC-------------------------CHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-------------------------CHHHHHHHHHHHHHhc-
Confidence 666554 46666655444322338999999988532 1233333333322222
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|.. ||..++.+.+.+|++ -.|+.=|=|.
T Consensus 160 ~lPiilYn~P~~-tg~~l~~e~~~~La~---~pnIvgiKds 196 (332)
T 2r8w_A 160 ALPLAIYNNPTT-TRFTFSDELLVRLAY---IPNIRAIKMP 196 (332)
T ss_dssp SSCEEEECCHHH-HCCCCCHHHHHHHHT---STTEEEEEEC
T ss_pred CCCEEEEeCccc-cCcCCCHHHHHHHHc---CCCEEEEEeC
Confidence 456777777754 899999888888764 3466555444
No 406
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=55.08 E-value=67 Score=28.72 Aligned_cols=76 Identities=16% Similarity=0.008 Sum_probs=42.0
Q ss_pred cEEEe-CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMG-GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t-~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
.|.+. .+-.+++..+-..+...|..|++..-. ....++...++.++.++. +.-++-.++.++++.+.
T Consensus 40 ~I~vi~~~le~av~~a~~~~~~~~~dVIISRGg---ta~~Lr~~~~iPVV~I~v--------s~~Dil~aL~~a~~~~~- 107 (225)
T 2pju_A 40 NITPIQLGFEKAVTYIRKKLANERCDAIIAAGS---NGAYLKSRLSVPVILIKP--------SGYDVLQFLAKAGKLTS- 107 (225)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHH---HHHHHHTTCSSCEEEECC--------CHHHHHHHHHHTTCTTS-
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCCeEEEeCCh---HHHHHHhhCCCCEEEecC--------CHHHHHHHHHHHHhhCC-
Confidence 35443 445667777655443334446665533 333344444788888874 34556677776655444
Q ss_pred eeEEEEeCCC
Q 011801 192 IKGLIITNPS 201 (477)
Q Consensus 192 ~k~vii~nP~ 201 (477)
|.-++..++
T Consensus 108 -kIavVg~~~ 116 (225)
T 2pju_A 108 -SIGVVTYQE 116 (225)
T ss_dssp -CEEEEEESS
T ss_pred -cEEEEeCch
Confidence 444555554
No 407
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=54.70 E-value=77 Score=28.63 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=53.3
Q ss_pred CcEEEeCC-hHHHH-HHHHHHhcCCCCeEEEcCCCccc-hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGG-ATGAN-ELIMFCLANPGDAFLVPSPYYAA-FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G-~t~al-~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.| ++.++ ..+...|.+.|-.|++..-.-.. ........ +.++..+.+|-. |.+++++++++..+.
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 81 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQ-----NEEHLASLAGRVTEA 81 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-CCCceEEEccCC-----CHHHHHHHHHHHHHH
Confidence 35677765 13344 44556677788888776533222 12222322 445555666532 577888887766554
Q ss_pred CC---CeeEEEEeCCC-CC-----cc--cCCCHHHHHHHHH
Q 011801 189 SI---NIKGLIITNPS-NP-----LG--TTLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~---~~k~vii~nP~-NP-----tG--~~~~~~~l~~l~~ 218 (477)
-. ++.+++ +|.. .+ .+ .-.+.+++++..+
T Consensus 82 ~g~~~~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (269)
T 2h7i_A 82 IGAGNKLDGVV-HSIGFMPQTGMGINPFFDAPYADVSKGIH 121 (269)
T ss_dssp HCTTCCEEEEE-ECCCCCCGGGSTTSCGGGCCHHHHHHHHH
T ss_pred hCCCCCceEEE-ECCccCccccccccccccCCHHHHHHHHH
Confidence 34 677544 4442 21 12 2246666666555
No 408
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=54.16 E-value=60 Score=30.66 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=52.0
Q ss_pred cEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..| ..++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+.-
T Consensus 94 pViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 94 PVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKP-------------------------TQEGMYQHFRHIAEAV 148 (314)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHHHS
T ss_pred cEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------------------CHHHHHHHHHHHHHhc
Confidence 3676555 45666655444322348999999988532 1223333333322222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+...++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 149 -~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnIvgiKds 185 (314)
T 3qze_A 149 -AIPQILYNVPG-RTSCDMLPETVERLSK---VPNIIGIKEA 185 (314)
T ss_dssp -CSCEEEEECHH-HHSCCCCHHHHHHHHT---STTEEEEEEC
T ss_pred -CCCEEEEeCcc-ccCCCCCHHHHHHHhc---CCCEEEEEcC
Confidence 56677777664 3899999888777764 3466655554
No 409
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=54.12 E-value=1.2e+02 Score=27.02 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=55.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcC---CCCeEEEcCCCccchHHHHhh---h-CCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLAN---PGDAFLVPSPYYAAFDRDLSW---R-TGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~---~Gd~vlv~~P~y~~~~~~~~~---~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
..+++|.|+.+.=..+...|.+ .|..|++..-.-......... . .|.++..+.+|-. +.+++++++++
T Consensus 7 k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~ 81 (259)
T 1oaa_A 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLG-----TEAGVQRLLSA 81 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTT-----SHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCC-----CHHHHHHHHHH
Confidence 3466666655444555666777 788888765432222222111 1 1557777777643 57888888877
Q ss_pred HHH--hCCCee-EEEEeCCCC--Cc-ccC---CCHHHHHHHHHH
Q 011801 185 AQE--ASINIK-GLIITNPSN--PL-GTT---LDRDTLKSLVSF 219 (477)
Q Consensus 185 ~~~--~~~~~k-~vii~nP~N--Pt-G~~---~~~~~l~~l~~~ 219 (477)
..+ ...++. -++++|..- +. +.. .+.++++++.+.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~ 125 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHH
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHH
Confidence 654 222333 245565532 21 111 466777776653
No 410
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=54.06 E-value=84 Score=27.63 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=54.2
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCC-------eEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGD-------AFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd-------~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.+++|+|+...=..+...|.+.|. .|++..-.-..... .+... +.++..+.+|-. |.+.+++++
T Consensus 4 ~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~ 77 (244)
T 2bd0_A 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE-GALTDTITADIS-----DMADVRRLT 77 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT-TCEEEEEECCTT-----SHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc-CCeeeEEEecCC-----CHHHHHHHH
Confidence 366666655444455566666776 66665433222221 12222 566777776642 577888888
Q ss_pred HHHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 183 ERAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++..+...++.+|+.+--..+.+. ..+.+++++..+
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 115 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMN 115 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHH
Confidence 776655556776554432222221 245566666554
No 411
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=53.99 E-value=1e+02 Score=28.79 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=52.6
Q ss_pred cEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..|+ .++++.+-.+-.-.-|.+++..|+|... +.+.+.+.++...+.
T Consensus 83 pViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~-------------------------s~~~l~~~f~~va~a- 136 (306)
T 1o5k_A 83 PVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP-------------------------TQEGLYQHYKYISER- 136 (306)
T ss_dssp CEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-------------------------CHHHHHHHHHHHHTT-
T ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCC-------------------------CHHHHHHHHHHHHHh-
Confidence 37776654 5666655444222338999999988432 123344444333222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
.....++.++|. .||..++.+.+.+|++ +-.|+.=|=|.
T Consensus 137 ~~lPiilYn~P~-~tg~~l~~~~~~~La~--~~pnIvgiKds 175 (306)
T 1o5k_A 137 TDLGIVVYNVPG-RTGVNVLPETAARIAA--DLKNVVGIXEA 175 (306)
T ss_dssp CSSCEEEEECHH-HHSCCCCHHHHHHHHH--HCTTEEEEEEC
T ss_pred CCCCEEEEeCcc-ccCcCCCHHHHHHHHH--hCCCEEEEeCC
Confidence 245677777775 5899999888777762 22466555554
No 412
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=53.84 E-value=40 Score=29.72 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=55.1
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|+|+.+.=..+...|...|..|++..-.-.......... +.++..+.+|-. +.+.+++++++..+ ..
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~---~~ 73 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-SNNVGYRARDLA-----SHQEVEQLFEQLDS---IP 73 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-SSCCCEEECCTT-----CHHHHHHHHHSCSS---CC
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-hhccCeEeecCC-----CHHHHHHHHHHHhh---cC
Confidence 3777777665555666777788888887765444333333333 455555665532 57778877764311 22
Q ss_pred eEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
.. +++|.. .+.+. ..+.+++++..+.
T Consensus 74 d~-lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 74 ST-VVHSAGSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp SE-EEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CE-EEEeCCcCCCCccccCCHHHHHHHHHH
Confidence 44 455543 23332 3566777766653
No 413
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=53.48 E-value=86 Score=28.40 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+...+++|.|+.+.=..+...|++.|..|++..-.-... ..... .+.+|-. |.+++++++++..+..
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------~~~~~--~~~~Dv~-----~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------VNVSD--HFKIDVT-----NEEEVKEAVEKTTKKY 79 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------TTSSE--EEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------cCcee--EEEecCC-----CHHHHHHHHHHHHHHc
Confidence 344566666665544556677888898887654221110 11223 3444422 5778888887766555
Q ss_pred CCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 190 INIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
.++.+|+.+--..+.+ ...+.++++++.+
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 110 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIID 110 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 5777644432222222 2346666766655
No 414
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=53.05 E-value=86 Score=29.60 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=48.5
Q ss_pred cEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
-|++..| ..++++.+-.+-.-.-|.+++..|+|.. . | .+.+.+.+.++...+..
T Consensus 82 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~--k-------------p--------~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 82 PIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFG--K-------------A--------TTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC------------------C--------CCHHHHHHHHHHHHHHC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccC--C-------------C--------CCHHHHHHHHHHHHhhC
Confidence 3777555 4555555544432233999999997632 0 0 01223333333222222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|..-+|..++.+.+.+|++- -.|+.=|=|.
T Consensus 139 -~lPiilYn~P~~t~g~~l~~~~~~~La~~--~pnIvgiKds 177 (318)
T 3qfe_A 139 -PLPVVIYNFPGVCNGIDLDSDMITTIARK--NPNVVGVKLT 177 (318)
T ss_dssp -SSCEEEEECCC----CCCCHHHHHHHHHH--CTTEEEEEES
T ss_pred -CCCEEEEeCCcccCCCCCCHHHHHHHHhh--CCCEEEEEeC
Confidence 56678888776556999998877777641 2366555554
No 415
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=52.97 E-value=51 Score=29.36 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=45.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+...|++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. +.+.+++++++.
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~---- 82 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-KDNYTIEVCNLA-----NKEECSNLISKT---- 82 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CSSEEEEECCTT-----SHHHHHHHHHTC----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-ccCccEEEcCCC-----CHHHHHHHHHhc----
Confidence 3446777766655445566778888988887765444333333333 334444555432 467777776542
Q ss_pred CCeeEEEEeCC
Q 011801 190 INIKGLIITNP 200 (477)
Q Consensus 190 ~~~k~vii~nP 200 (477)
.++.+++ .|.
T Consensus 83 ~~id~li-~~A 92 (249)
T 3f9i_A 83 SNLDILV-CNA 92 (249)
T ss_dssp SCCSEEE-ECC
T ss_pred CCCCEEE-ECC
Confidence 2566544 444
No 416
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=52.66 E-value=1.2e+02 Score=26.94 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=55.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+...=..+...|.+.|..|++..-.-..... .+... |.++..+.+|-. |.+++++++++..+.
T Consensus 15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCHVG-----KAEDRERLVAMAVNL 88 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 456776665544455666777888887775433222221 12222 556666666532 567777777765554
Q ss_pred CCCeeEEEEeCCCCC-ccc--CCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSNP-LGT--TLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~NP-tG~--~~~~~~l~~l~~ 218 (477)
..++.+|+.+--..+ .+. -.+.++++++.+
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 121 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILH 121 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHH
Confidence 446775543322222 222 246666666655
No 417
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=52.65 E-value=78 Score=28.34 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=54.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|.|+...=..+...|.+.|..|++..-.-.... ...... +.++..+.+|-. |.+.+++++++..+.
T Consensus 9 ~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 9 HALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVT-----KKEDLHKIVEEAMSH 82 (264)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCC-----CHHHHHHHHHHHHHH
Confidence 4666666554445566778888988776532221111 112222 456677776642 578888888776655
Q ss_pred CCCeeEEEEeCCC---CCcc--cCCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPS---NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~---NPtG--~~~~~~~l~~l~~ 218 (477)
..++.+|+ .|.. .+.+ .-.+.+++++..+
T Consensus 83 ~g~id~lv-~~Ag~~~~~~~~~~~~~~~~~~~~~~ 116 (264)
T 3i4f_A 83 FGKIDFLI-NNAGPYVFERKKLVDYEEDEWNEMIQ 116 (264)
T ss_dssp HSCCCEEE-CCCCCCCCSCCCGGGCCHHHHHHHHH
T ss_pred hCCCCEEE-ECCcccccCCCccccCCHHHHHHHHH
Confidence 55677544 4433 1112 2246666666655
No 418
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=52.56 E-value=21 Score=32.69 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=52.7
Q ss_pred eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHH
Q 011801 137 AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSL 216 (477)
Q Consensus 137 ~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l 216 (477)
.||+...+|.+-...+...-..--+|+-+ .+|-+|+-++.++-.- ...+|++. -.+++.++++++
T Consensus 81 SVLTd~~~F~Gs~~~L~~vr~~v~lPvLr---KDFiid~yQI~eAr~~------GADaILLI------~a~L~~~~l~~l 145 (258)
T 4a29_A 81 SITTEEKYFNGSYETLRKIASSVSIPILM---SDFIVKESQIDDAYNL------GADTVLLI------VKILTERELESL 145 (258)
T ss_dssp EEECCSTTTCCCHHHHHHHHTTCSSCEEE---ESCCCSHHHHHHHHHH------TCSEEEEE------GGGSCHHHHHHH
T ss_pred EEeCCCCCCCCCHHHHHHHHHhcCCCEee---ccccccHHHHHHHHHc------CCCeeehH------HhhcCHHHHHHH
Confidence 35666677777665554321222234433 3789999888877543 44456553 356899999999
Q ss_pred HHHHHhcCeEEEecccc
Q 011801 217 VSFINDKNIHLVCDEIY 233 (477)
Q Consensus 217 ~~~~~~~~~~lI~De~y 233 (477)
.+.|++.|+-+++ |++
T Consensus 146 ~~~A~~lGl~~Lv-EVh 161 (258)
T 4a29_A 146 LEYARSYGMEPLI-LIN 161 (258)
T ss_dssp HHHHHHTTCCCEE-EES
T ss_pred HHHHHHHhHHHHH-hcc
Confidence 9999999987776 444
No 419
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=52.46 E-value=1.1e+02 Score=26.78 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=52.2
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchHH---HHhhhCCcEEEE-EeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFDR---DLSWRTGVQIVP-VHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~~---~~~~~~g~~~~~-v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.+++|.|+...=..+...|.+.|..|++. ...-..... .+... |.++.. +.+|-. |.+.+++++++..+
T Consensus 3 ~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR-GSPLVAVLGANLL-----EAEAATALVHQAAE 76 (245)
T ss_dssp EEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT-TCSCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCceEEEEeccCC-----CHHHHHHHHHHHHH
Confidence 36666665544445566788889887765 333222211 12222 444444 555532 56778877776554
Q ss_pred hCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
.-.++.+|+.+-...+.+ ...+.+++++..+
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLE 109 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHh
Confidence 444677655432222222 2345566655544
No 420
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=51.47 E-value=35 Score=31.56 Aligned_cols=102 Identities=9% Similarity=0.191 Sum_probs=56.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCC---eEEEcCCCccchHHHHh---hh-CCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGD---AFLVPSPYYAAFDRDLS---WR-TGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd---~vlv~~P~y~~~~~~~~---~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
..+++|.|+.+.=..+...|++.|. .|++..-.-.......+ .. .|.++..+.+|-. |.+++++++++
T Consensus 34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~ 108 (287)
T 3rku_A 34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDIT-----QAEKIKPFIEN 108 (287)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTT-----CGGGHHHHHHT
T ss_pred CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCC-----CHHHHHHHHHH
Confidence 3567776655444455566766665 67666544332222221 11 2667777887643 46777877776
Q ss_pred HHHhCCCeeEEEEeCCC-C-Cccc--CCCHHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPS-N-PLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~-N-PtG~--~~~~~~l~~l~~~ 219 (477)
..+.-.++.+| ++|.. . +.+. .++.++++++.+.
T Consensus 109 ~~~~~g~iD~l-VnnAG~~~~~~~~~~~~~~~~~~~~~v 146 (287)
T 3rku_A 109 LPQEFKDIDIL-VNNAGKALGSDRVGQIATEDIQDVFDT 146 (287)
T ss_dssp SCGGGCSCCEE-EECCCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred HHHhcCCCCEE-EECCCcCCCCCCcccCCHHHHHHHHHH
Confidence 54444567754 44443 2 2222 3477777777664
No 421
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=49.99 E-value=1.1e+02 Score=27.45 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|.|+...=..+...|++.|..|++..-.-..... .+... +.++..+.+|-. +.+.+++++++..+
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDAS-----LRPEREKLMQTVSS 87 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeeEEEECCCC-----CHHHHHHHHHHHHH
Confidence 3456666665544455666777788877766433222221 12222 556666666532 56777777766544
Q ss_pred hC-CCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 188 AS-INIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~-~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
.- .++.+|+.+-...+.+. ..+.+++++..+
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 121 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHIS 121 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHH
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 32 46776655433222222 245666665554
No 422
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=49.87 E-value=71 Score=29.20 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=47.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++..- .-.... ..+... |.++..+.+|-. |.+++++++++..+
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL-GARVIFLRADLA-----DLSSHQATVDAVVA 103 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SGGGHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc-CCcEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 34667766655445666778888988877642 222222 222323 667777777643 45666666666555
Q ss_pred hCCCeeEEEEe
Q 011801 188 ASINIKGLIIT 198 (477)
Q Consensus 188 ~~~~~k~vii~ 198 (477)
.-.++.+|+.+
T Consensus 104 ~~g~iD~lvnn 114 (280)
T 4da9_A 104 EFGRIDCLVNN 114 (280)
T ss_dssp HHSCCCEEEEE
T ss_pred HcCCCCEEEEC
Confidence 44567765544
No 423
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=49.64 E-value=71 Score=28.19 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=46.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|-.|++. ...-.... ..++.. +.++..+.+|-. |.+.+++++++..+
T Consensus 6 ~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 6 KTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA-GINVVVAKGDVK-----NPEDVENMVKTAMD 79 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT-TCCEEEEESCTT-----SHHHHHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHHH
Confidence 456777665544445556677788877765 32222121 222223 566667776642 57788888776655
Q ss_pred hCCCeeEEEEe
Q 011801 188 ASINIKGLIIT 198 (477)
Q Consensus 188 ~~~~~k~vii~ 198 (477)
...++..|+.+
T Consensus 80 ~~~~~d~vi~~ 90 (247)
T 2hq1_A 80 AFGRIDILVNN 90 (247)
T ss_dssp HHSCCCEEEEC
T ss_pred hcCCCCEEEEC
Confidence 44467765543
No 424
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=49.46 E-value=83 Score=27.90 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=53.9
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+.=..+...|++.|..|++. ...-.... ..+... +.++..+.+|-. +.+.+++.+++..+
T Consensus 8 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 8 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN-GGSAFSIGANLE-----SLHGVEALYSSLDN 81 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT-TCEEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc-CCceEEEecCcC-----CHHHHHHHHHHHHH
Confidence 456666666554455667778889888763 33322222 223333 677777777643 45666666654332
Q ss_pred h------CCCeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 188 A------SINIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~------~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
. ..++.+++.+--..+.+. ..+.+++++..+
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 120 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVS 120 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHh
Confidence 1 123665443322233332 246666666655
No 425
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=49.30 E-value=69 Score=28.78 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=45.4
Q ss_pred CCCcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 110 DPDRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 110 ~~~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
....+++|.|+ ++.=..+...|++.|..|++..-.-.. .........+.++..+.+|-. |.+++++++++
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~ 80 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVT-----NDAEIETCFAS 80 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCS-----SSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCC-----CHHHHHHHHHH
Confidence 34467777766 334445556677788888776433211 112222221225666666543 45777777776
Q ss_pred HHHhCCCeeEEEEe
Q 011801 185 AQEASINIKGLIIT 198 (477)
Q Consensus 185 ~~~~~~~~k~vii~ 198 (477)
..+...++.+++.+
T Consensus 81 ~~~~~g~id~li~~ 94 (266)
T 3oig_A 81 IKEQVGVIHGIAHC 94 (266)
T ss_dssp HHHHHSCCCEEEEC
T ss_pred HHHHhCCeeEEEEc
Confidence 65544567754433
No 426
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=49.25 E-value=78 Score=29.50 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=51.5
Q ss_pred cEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
.|++..| ..++++.+-.+-.-.-|.+++..|+|.... .+.+.+.++...+..
T Consensus 78 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~-------------------------~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 78 PVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPS-------------------------QEGIYQHFKTIAEAT 132 (297)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC-------------------------HHHHHHHHHHHHHHC
T ss_pred cEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC-------------------------HHHHHHHHHHHHHhC
Confidence 3676555 555665554443223389999999885321 122333333222222
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 133 -~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnivgiKds 169 (297)
T 3flu_A 133 -SIPMIIYNVPG-RTVVSMTNDTILRLAE---IPNIVGVKEA 169 (297)
T ss_dssp -CSCEEEEECHH-HHSSCCCHHHHHHHTT---STTEEEEEEC
T ss_pred -CCCEEEEECCc-hhccCCCHHHHHHHHc---CCCEEEEEeC
Confidence 56677887775 4899999887777653 3466555554
No 427
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=49.23 E-value=1e+02 Score=27.49 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=47.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-.... ..++.. |.++..+.+|-. |.+.+++++++..+.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL-GGQCVPVVCDSS-----QESEVRSLFEQVDRE 79 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-SSEEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-CCceEEEECCCC-----CHHHHHHHHHHHHHh
Confidence 34666665554445566778888988877643322222 122223 567777777642 577888887765543
Q ss_pred -CCCeeEEEEeCC
Q 011801 189 -SINIKGLIITNP 200 (477)
Q Consensus 189 -~~~~k~vii~nP 200 (477)
..++.+++ +|.
T Consensus 80 ~~g~id~lv-nnA 91 (260)
T 2qq5_A 80 QQGRLDVLV-NNA 91 (260)
T ss_dssp HTTCCCEEE-ECC
T ss_pred cCCCceEEE-ECC
Confidence 34677544 443
No 428
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=49.22 E-value=51 Score=30.95 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=50.7
Q ss_pred EEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|++..|+ .++++.+-.+-.-.-|.+++..|+|.... .+.+.+.++...+..
T Consensus 88 viaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~-------------------------~~~l~~~f~~ia~a~- 141 (304)
T 3cpr_A 88 LIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPS-------------------------QEGLLAHFGAIAAAT- 141 (304)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC-------------------------HHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC-------------------------HHHHHHHHHHHHHhc-
Confidence 7776654 56666554443223389999999884321 122333333222211
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
....++.++|. .||..++.+.+.+|++ -.|+.=|=|.
T Consensus 142 ~lPiilYn~P~-~tg~~l~~~~~~~La~---~pnIvgiKds 178 (304)
T 3cpr_A 142 EVPICLYDIPG-RSGIPIESDTMRRLSE---LPTILAVXDA 178 (304)
T ss_dssp CSCEEEEECHH-HHSSCCCHHHHHHHTT---STTEEEEEEC
T ss_pred CCCEEEEeCcc-ccCcCCCHHHHHHHHc---CCCEEEEecC
Confidence 45677777664 4799999888777754 3466555554
No 429
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=48.54 E-value=73 Score=29.87 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=19.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPS 142 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~ 142 (477)
...|++|+|+...=..++..|.+.|..|.+..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 56 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLD 56 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 45788877644333344556667787776654
No 430
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=48.18 E-value=1.6e+02 Score=26.69 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=54.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|+|+.+.=..+...|...|..|++..-.-...... +....+.++..+.+|-. |.+.+++++++..+.
T Consensus 29 k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTME-----DMTFAEQFVAQAGKL 103 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCC-----CHHHHHHHHHHHHHH
Confidence 3567766655444455566777888887765433222221 22221236666776642 567777777765544
Q ss_pred CCCeeEEEEeCCCC-Ccc-cCCCHHHHHHHHH
Q 011801 189 SINIKGLIITNPSN-PLG-TTLDRDTLKSLVS 218 (477)
Q Consensus 189 ~~~~k~vii~nP~N-PtG-~~~~~~~l~~l~~ 218 (477)
..++.+|+.+.... +.+ ...+.+++++..+
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~ 135 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSME 135 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHH
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHH
Confidence 44677655442222 111 1235666666555
No 431
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=48.01 E-value=71 Score=31.80 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEc--CCCccchHHHHhh---hCCcEEEEEeccCCCCcccCHHHH-HHHHHHHHHhCCCe
Q 011801 119 GATGANELIMFCLANPGDAFLVP--SPYYAAFDRDLSW---RTGVQIVPVHCDISNNFKITREAL-EAAYERAQEASINI 192 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~--~P~y~~~~~~~~~---~~g~~~~~v~~~~~~~f~i~~~~l-~~~~~~~~~~~~~~ 192 (477)
|=|.....++..+...|.+|++. +|+.++-...++. ..|+.++.... ..++..+ .++++.+..+ ..
T Consensus 112 GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~------~~dp~~i~~~al~~a~~~--~~ 183 (443)
T 3dm5_A 112 GKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQ------EKDAIKLAKEGVDYFKSK--GV 183 (443)
T ss_dssp SHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTT------CCCHHHHHHHHHHHHHHT--TC
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCC------CCCHHHHHHHHHHHHHhC--CC
Confidence 44445555556666778666543 4544443333322 12555442221 1244433 4566655443 35
Q ss_pred eEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 193 KGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 193 k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
..|++..|. .+.. .--.+++..+.+......+++|+|...
T Consensus 184 DvVIIDTaGrl~~d-~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 184 DIIIVDTAGRHKED-KALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CEEEEECCCcccch-HHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 678887662 1111 012234666666666667899999765
No 432
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=47.85 E-value=91 Score=31.52 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=54.6
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCC-eEEEcCCC---cc---chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGD-AFLVPSPY---YA---AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd-~vlv~~P~---y~---~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
.+++|.|+.+.=..+...|.+.|- .|++..-. -. .....++.. |.++..+.+|-. |.+++++++++.
T Consensus 241 ~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~-g~~v~~~~~Dvt-----d~~~v~~~~~~i 314 (496)
T 3mje_A 241 SVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL-GVRVTIAACDAA-----DREALAALLAEL 314 (496)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHTC
T ss_pred EEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc-CCeEEEEEccCC-----CHHHHHHHHHHH
Confidence 345555544333444566777786 55554321 11 122334444 888888888753 678888888765
Q ss_pred HHhCCCeeEEEEeCCCC-Cccc--CCCHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPSN-PLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~N-PtG~--~~~~~~l~~l~~ 218 (477)
.+. .++.+||.+--.. ..+. -++.++++++.+
T Consensus 315 ~~~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~ 349 (496)
T 3mje_A 315 PED-APLTAVFHSAGVAHDDAPVADLTLGQLDALMR 349 (496)
T ss_dssp CTT-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHH
T ss_pred HHh-CCCeEEEECCcccCCCCCcccCCHHHHHHHHH
Confidence 444 3677655432222 3332 346666666654
No 433
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=47.81 E-value=63 Score=29.32 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=45.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|+|+...=..+...|.+.|..|++..-.-.... ..+... +.++..+.+|-. |.+.+++++++..+
T Consensus 34 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY-GVHSKAYKCNIS-----DPKSVEETISQQEK 107 (279)
T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH-CSCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcceEEEeecC-----CHHHHHHHHHHHHH
Confidence 345677665544334555667777877776543322222 222223 556666666532 57778887776554
Q ss_pred hCCCeeEEEEe
Q 011801 188 ASINIKGLIIT 198 (477)
Q Consensus 188 ~~~~~k~vii~ 198 (477)
...++.+|+.+
T Consensus 108 ~~g~id~li~~ 118 (279)
T 3ctm_A 108 DFGTIDVFVAN 118 (279)
T ss_dssp HHSCCSEEEEC
T ss_pred HhCCCCEEEEC
Confidence 44467765543
No 434
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=47.68 E-value=66 Score=30.15 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=41.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEE
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLV 228 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI 228 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||
T Consensus 30 ~dg~iD~~~l~~lv~~li~~--Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi 89 (304)
T 3cpr_A 30 ESGDIDIAAGREVAAYLVDK--GLDSLVLA-GTTGESPTTTAAEKLELLKAVREEVGDRAKLI 89 (304)
T ss_dssp TTSCBCHHHHHHHHHHHHHT--TCCEEEES-STTTTTTTSCHHHHHHHHHHHHHHHTTTSEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 35689999999999876555 56676654 344445679999999999988753 45555
No 435
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=47.24 E-value=57 Score=30.57 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 25 ~dg~iD~~~l~~lv~~li~~--Gv~Gl~v~-GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 85 (303)
T 2wkj_A 25 QQQALDKASLRRLVQFNIQQ--GIDGLYVG-GSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIA 85 (303)
T ss_dssp TTSSBCHHHHHHHHHHHHHT--TCSEEEES-STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-eeccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35689999999998876554 46676664 344445679999999999988753 466664
No 436
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=47.20 E-value=1.4e+02 Score=31.19 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=63.7
Q ss_pred CccCCCcEEEeCChHH----HHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCC-cccCHHHHHH
Q 011801 107 VTFDPDRIVMGGGATG----ANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNN-FKITREALEA 180 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~----al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~-f~i~~~~l~~ 180 (477)
+.++++.|.+++++.. |+.++.+.+...+ ...+...|.|+ ++ |+- +|.+.+ | ++++.+++
T Consensus 41 L~i~~~~i~I~a~~~~G~~~glqTL~QL~~~~~~~~~I~D~P~f~-------~R-G~m-----lD~sR~~f-~~~~~ik~ 106 (627)
T 2epl_X 41 VEGRQGYYQVSYKQPHQLYRALALLSAALRSGQDEVQIEEEAAYE-------DL-AYM-----ADCSRNAV-LNLSSAKK 106 (627)
T ss_dssp EEEETTEEEEEESSTTHHHHHHHHHHHHHHTTCSSEEEEECCSCS-------EE-EEE-----EECSSSCC-BCHHHHHH
T ss_pred EEEeCCEEEEEECCHHHHHHHHHHHHHHhhcCCCceEEEeCCCCC-------cc-ceE-----EecCCCCC-CCHHHHHH
Confidence 4456778888655443 4445444443222 23445555553 22 322 232233 3 47788888
Q ss_pred HHHHHHHhCCCeeEEEEeC----CCCC----cccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 181 AYERAQEASINIKGLIITN----PSNP----LGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~n----P~NP----tG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
.++.....+.++=.+-++. +..| .|-.++.+++++|++.|+++||-||
T Consensus 107 ~id~ma~~KlN~lh~Hl~D~~ei~~~P~l~~~~~~YT~~di~eiv~yA~~rgI~VI 162 (627)
T 2epl_X 107 MIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFV 162 (627)
T ss_dssp HHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCcEEEEEeecccccCCCcccCccCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 8876544444433333332 2333 4678999999999999999999988
No 437
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=46.57 E-value=32 Score=31.49 Aligned_cols=82 Identities=11% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHH
Q 011801 135 GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLK 214 (477)
Q Consensus 135 Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~ 214 (477)
+=.|++...+|.+-...++..-..--+|+-. .+|-+|.-++.++... ...+|++. ...++.++++
T Consensus 76 ~IsVlTd~~~F~gs~~dL~~ir~~v~lPvLr---KDfi~~~~qi~ea~~~------GAD~ilLi------~a~l~~~~l~ 140 (251)
T 1i4n_A 76 AISILTEKHYFKGDPAFVRAARNLTCRPILA---KDFYIDTVQVKLASSV------GADAILII------ARILTAEQIK 140 (251)
T ss_dssp EEEEECCCSSSCCCTHHHHHHHTTCCSCEEE---ECCCCSTHHHHHHHHT------TCSEEEEE------GGGSCHHHHH
T ss_pred ceEEEecccccCCCHHHHHHHHHhCCCCEEE---eeCCCCHHHHHHHHHc------CCCEEEEe------cccCCHHHHH
Confidence 3456666666655444433210111112222 2466776666664332 45566554 3357888999
Q ss_pred HHHHHHHhcCeEEEecc
Q 011801 215 SLVSFINDKNIHLVCDE 231 (477)
Q Consensus 215 ~l~~~~~~~~~~lI~De 231 (477)
++++.|++.|+.+++|-
T Consensus 141 ~l~~~a~~lGl~~lvEv 157 (251)
T 1i4n_A 141 EIYEAAEELGMDSLVEV 157 (251)
T ss_dssp HHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHcCCeEEEEe
Confidence 99999999999888874
No 438
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=46.48 E-value=63 Score=30.30 Aligned_cols=58 Identities=7% Similarity=0.114 Sum_probs=42.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 29 ~dg~iD~~~l~~lv~~li~~--Gv~gi~v~-GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 89 (304)
T 3l21_A 29 GDGSLDTATAARLANHLVDQ--GCDGLVVS-GTTGESPTTTDGEKIELLRAVLEAVGDRARVIA 89 (304)
T ss_dssp TTSCBCHHHHHHHHHHHHHT--TCSEEEES-STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEeC-ccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35589999999999876655 56676554 444455678999999999988763 456664
No 439
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=46.42 E-value=1.5e+02 Score=28.33 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=54.0
Q ss_pred cEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccc-hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAA-FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
-|++..|+ .++++.+-.+-.-.-|.+++..|+|.. . +.+.+.+.++...+.
T Consensus 94 pViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~-------------------------s~~~l~~~f~~IA~a 148 (344)
T 2hmc_A 94 PVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGS-------------------------VIAAQKAHFKAILSA 148 (344)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTT-------------------------CHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCC-------------------------CHHHHHHHHHHHHhh
Confidence 37776664 556665544432223899999999853 1 123333333333221
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHH-HHHHHhcCeEEEecc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSL-VSFINDKNIHLVCDE 231 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l-~~~~~~~~~~lI~De 231 (477)
......++.++| .||..++.+.+.+| ++ -.|+.=|=|.
T Consensus 149 a~~lPiilYn~P--~tg~~l~~e~~~~L~a~---~pnIvGiKds 187 (344)
T 2hmc_A 149 APEIPAVIYNSP--YYGFATRADLFFALRAE---HKNLVGFKEF 187 (344)
T ss_dssp STTSCEEEEEBG--GGTBCCCHHHHHHHHHH---CTTEEEEEEC
T ss_pred CCCCcEEEEecC--ccCCCcCHHHHHHHHhc---CCCEEEEEcC
Confidence 225667888888 89999998888887 43 3466655554
No 440
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=45.94 E-value=82 Score=28.93 Aligned_cols=88 Identities=17% Similarity=0.031 Sum_probs=44.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH---HhhhCCcEEEEEeccCCCCccc------------CH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD---LSWRTGVQIVPVHCDISNNFKI------------TR 175 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i------------~~ 175 (477)
..+++|.|+.+.=..+...|+..|-.|++.. -.-...... +....|.++..+.+|-.+.-.. ..
T Consensus 10 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 89 (291)
T 1e7w_A 10 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 89 (291)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccchH
Confidence 3466666655544556677888888887765 332222221 2101255666666664321000 01
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCC
Q 011801 176 EALEAAYERAQEASINIKGLIITNP 200 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP 200 (477)
+.+++++++..+...++.+|+ +|.
T Consensus 90 ~~v~~~~~~~~~~~g~iD~lv-nnA 113 (291)
T 1e7w_A 90 TRCAELVAACYTHWGRCDVLV-NNA 113 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCEEE-ECC
T ss_pred HHHHHHHHHHHHhcCCCCEEE-ECC
Confidence 166666665544444677544 444
No 441
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=45.26 E-value=85 Score=28.35 Aligned_cols=82 Identities=22% Similarity=0.133 Sum_probs=44.1
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchHHH---HhhhCCcEEEEEeccCCCCcccCH----HHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFDRD---LSWRTGVQIVPVHCDISNNFKITR----EALEAAYER 184 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~----~~l~~~~~~ 184 (477)
.+++|.|+...=..+...|.+.|..|++..- .-...... +....|.++..+.+|-. |. +.+++++++
T Consensus 13 ~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 13 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS-----LSSSLLDCCEDIIDC 87 (276)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCS-----SSTTHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCC-----CccccHHHHHHHHHH
Confidence 4666666554445566677788988877643 22212211 11111445666666532 34 667777766
Q ss_pred HHHhCCCeeEEEEeCC
Q 011801 185 AQEASINIKGLIITNP 200 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP 200 (477)
..+...++.+|+ +|.
T Consensus 88 ~~~~~g~id~lv-~nA 102 (276)
T 1mxh_A 88 SFRAFGRCDVLV-NNA 102 (276)
T ss_dssp HHHHHSCCCEEE-ECC
T ss_pred HHHhcCCCCEEE-ECC
Confidence 554444677544 444
No 442
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=44.96 E-value=1.6e+02 Score=27.32 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.-.|++|+|+...=..++..|.+.|..|.+..-.-......+....++.+ +.+|- -|.+.+++++++.
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~--~~~Dl-----~d~~~~~~~~~~~----- 87 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSV--IEGSV-----TDAGLLERAFDSF----- 87 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEE--EECCT-----TCHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceE--EEeeC-----CCHHHHHHHHhhc-----
Confidence 34577776644333455566777787776654321111111111114444 34332 2577888887654
Q ss_pred CeeEEEEeC
Q 011801 191 NIKGLIITN 199 (477)
Q Consensus 191 ~~k~vii~n 199 (477)
++.+|+.+-
T Consensus 88 ~~D~vih~A 96 (330)
T 2pzm_A 88 KPTHVVHSA 96 (330)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 566666553
No 443
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=44.77 E-value=1.4e+02 Score=28.10 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=33.2
Q ss_pred ccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC----------hHHHHHHHHHHhc-CCCCeEE
Q 011801 71 EGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG----------ATGANELIMFCLA-NPGDAFL 139 (477)
Q Consensus 71 ~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G----------~t~al~~i~~~l~-~~Gd~vl 139 (477)
.|++.|.....|+ ....+-+++.+++..... .+..+++++++- ...+++..+.-|- +-=|-++
T Consensus 50 ~Gi~~~DTA~~Yg---sE~~vG~al~~~~~~~~~---g~~R~~v~I~TK~~~~~~~~~~v~~~~e~SL~rLg~dyiDl~l 123 (334)
T 3krb_A 50 TGYRHIDCAYVYQ---NEEAIGRAFGKIFKDASS---GIKREDVWITSKLWNYNHRPELVREQCKKTMSDLQVDYLDLFL 123 (334)
T ss_dssp HTCCEEECCGGGS---CHHHHHHHHHHHHHCTTS---SCCGGGCEEEEEECGGGCSGGGHHHHHHHHHHHHTCSCEEEEE
T ss_pred cCCCEEECccccc---CHHHHHHHHHHHhhhccC---CCChhhEEEEeeeCCCCCCHHHHHHHHHHHHHHcCCCceeEEE
Confidence 4555566566675 234556666655532000 134567777542 2233444444441 2225666
Q ss_pred EcCCC
Q 011801 140 VPSPY 144 (477)
Q Consensus 140 v~~P~ 144 (477)
+..|.
T Consensus 124 lH~p~ 128 (334)
T 3krb_A 124 VHWPL 128 (334)
T ss_dssp ECCSC
T ss_pred Ecccc
Confidence 66664
No 444
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=43.99 E-value=83 Score=28.23 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=42.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|++.|..|++..-.-.. .. .+ ..+.+|-. |.+++++++++..+.-.+
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~------~~-~~--~~~~~Dl~-----d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 22 RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP------PE-GF--LAVKCDIT-----DTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC------CT-TS--EEEECCTT-----SHHHHHHHHHHHHHHTCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh------hc-cc--eEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 356777665554455667788889888765432111 11 23 33444432 578888888776655557
Q ss_pred eeEEEEe
Q 011801 192 IKGLIIT 198 (477)
Q Consensus 192 ~k~vii~ 198 (477)
+.+|+.+
T Consensus 88 iD~lv~n 94 (253)
T 2nm0_A 88 VEVLIAN 94 (253)
T ss_dssp CSEEEEE
T ss_pred CCEEEEC
Confidence 7765544
No 445
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=43.93 E-value=1.8e+02 Score=26.07 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH---hhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL---SWR-TGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~---~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
....+++|.|+.+.=..+...|++.|-.|++..-.-....... ... .+..+..+.+|-. +.+.+++++++
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~- 82 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLG-----TEQGCQDVIEK- 82 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTT-----SHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCC-----CHHHHHHHHHh-
Confidence 3345677666655445566778888988887654433222221 111 1456667776643 46677776654
Q ss_pred HHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~ 218 (477)
-.++.+++ +|.. ...+ .-.+.++++++.+
T Consensus 83 ---~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 114 (267)
T 3t4x_A 83 ---YPKVDILI-NNLGIFEPVEYFDIPDEDWFKLFE 114 (267)
T ss_dssp ---CCCCSEEE-ECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred ---cCCCCEEE-ECCCCCCCCccccCCHHHHHHHHH
Confidence 23566544 4442 2222 2346666666655
No 446
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=43.73 E-value=90 Score=29.36 Aligned_cols=88 Identities=16% Similarity=0.010 Sum_probs=44.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHHHhh---hCCcEEEEEeccCCCCcc------------cCH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRDLSW---RTGVQIVPVHCDISNNFK------------ITR 175 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~~~~---~~g~~~~~v~~~~~~~f~------------i~~ 175 (477)
..+++|.|+.+.=..+...|+..|-.|++.. -.-......... ..|.++..+.+|-.+.-. .+.
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~ 126 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 126 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccccH
Confidence 3466666655544566677888898887754 332222221111 125566666666432100 011
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCC
Q 011801 176 EALEAAYERAQEASINIKGLIITNP 200 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP 200 (477)
+.+++++++..+.-.++.+|+ +|.
T Consensus 127 ~~v~~~~~~~~~~~g~iD~lV-nnA 150 (328)
T 2qhx_A 127 TRCAELVAACYTHWGRCDVLV-NNA 150 (328)
T ss_dssp HHHHHHHHHHHHHHSCCCEEE-ECC
T ss_pred HHHHHHHHHHHHhcCCCCEEE-ECC
Confidence 166666665544444677544 444
No 447
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=43.72 E-value=1.8e+02 Score=26.11 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=52.6
Q ss_pred CcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCcc--chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYA--AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~--~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+ ...=..+...|.+.|..|++..-.-. .....+....+ .+..+.+|-. |.+.+++++++..+
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~-----~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN-SPYVYELDVS-----KEEHFKSLYNSVKK 80 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 457777765 33334555667788988776543222 11112221113 2344555532 57788888877665
Q ss_pred hCCCeeEEEEeCCC-CCc----cc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPL----GT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPt----G~--~~~~~~l~~l~~ 218 (477)
...++.+|+ +|.. .+. +. -.+.++++...+
T Consensus 81 ~~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 117 (275)
T 2pd4_A 81 DLGSLDFIV-HSVAFAPKEALEGSLLETSKSAFNTAME 117 (275)
T ss_dssp HTSCEEEEE-ECCCCCCGGGGSSCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEE-ECCccCccccCCCCcccCCHHHHHHHHH
Confidence 555777544 4442 211 11 345666666555
No 448
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=43.66 E-value=69 Score=29.19 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=53.0
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
.+++|+|+.+.=..+...|++.|..|++..-.-.......... ...++..+.+|-. |.+++++++++..+.-.+
T Consensus 23 ~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 23 TLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVR-----DRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp EEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTT-----CHHHHHHHHHTCCGGGSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHHhCC
Confidence 4666655544334555667788988877654322222222211 0125556666532 578888888765444446
Q ss_pred eeEEEEeCCC-CC-ccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPS-NP-LGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~-NP-tG~--~~~~~~l~~l~~ 218 (477)
+.+|+ +|.. .+ .+. -.+.++++++.+
T Consensus 98 iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~~ 127 (272)
T 2nwq_A 98 LRGLI-NNAGLALGTDPAQSCDLDDWDTMVD 127 (272)
T ss_dssp CCEEE-ECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCCCCcccCCHHHHHHHHH
Confidence 67544 4442 11 121 245666666655
No 449
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=43.54 E-value=53 Score=30.60 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCCh---HHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA---TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~---t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..+=|..+.+...+.-+.+++ |++..|+ .++++.+-.+-.-.-|.+++..|+|.
T Consensus 52 s~~Er~~v~~~~~~~~~gr~p-----vi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~------------------ 108 (291)
T 3a5f_A 52 TETERKETIKFVIDKVNKRIP-----VIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYN------------------ 108 (291)
T ss_dssp CHHHHHHHHHHHHHHHTTSSC-----EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS------------------
T ss_pred CHHHHHHHHHHHHHHhCCCCc-----EEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCC------------------
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+.+.+.+.+.++...+.. +...++.++|.. ||..++.+.+.+|++
T Consensus 109 -------~~s~~~l~~~f~~ia~a~-~lPiilYn~P~~-tg~~l~~~~~~~La~ 153 (291)
T 3a5f_A 109 -------KTTQKGLVKHFKAVSDAV-STPIIIYNVPGR-TGLNITPGTLKELCE 153 (291)
T ss_dssp -------CCCHHHHHHHC-CTGGGC-CSCEEEEECHHH-HSCCCCHHHHHHHTT
T ss_pred -------CCCHHHHHHHHHHHHHhc-CCCEEEEeCccc-cCCCCCHHHHHHHHc
No 450
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=43.52 E-value=1.5e+02 Score=26.30 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=44.4
Q ss_pred cEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLAN-PGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++|+|+...=..+...|++ .|..|++..-.-..... .+... |.++..+.+|-. +.+.+++++++..+.
T Consensus 6 ~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDID-----DLQSIRALRDFLRKE 79 (276)
T ss_dssp EEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-TCCCEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc-CCeeEEEECCCC-----CHHHHHHHHHHHHHh
Confidence 466666554444455566777 78777776543222221 22222 445555555532 567788877766554
Q ss_pred CCCeeEEEEe
Q 011801 189 SINIKGLIIT 198 (477)
Q Consensus 189 ~~~~k~vii~ 198 (477)
..++.+|+.+
T Consensus 80 ~g~id~li~~ 89 (276)
T 1wma_A 80 YGGLDVLVNN 89 (276)
T ss_dssp HSSEEEEEEC
T ss_pred cCCCCEEEEC
Confidence 4567765543
No 451
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=43.11 E-value=89 Score=29.00 Aligned_cols=95 Identities=29% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCccCCCcEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC
Q 011801 92 RQAVAKFMGKGRGGRVTFDPDRIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 92 r~aia~~~~~~~g~~~~~~~~~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~ 168 (477)
|.++.+...+.-+.+++ |++..| ..++++.+-.+-.-.-|.+++..|+|.
T Consensus 56 r~~v~~~~~~~~~gr~p-----viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~---------------------- 108 (291)
T 3tak_A 56 HTQVIKEIIRVANKRIP-----IIAGTGANSTREAIELTKAAKDLGADAALLVTPYYN---------------------- 108 (291)
T ss_dssp HHHHHHHHHHHHTTSSC-----EEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS----------------------
T ss_pred HHHHHHHHHHHhCCCCe-----EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC----------------------
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+.+.+.+.+.++...+.. +...++.++|. .||..++.+.+.+|++
T Consensus 109 ---~~~~~~l~~~f~~ia~a~-~lPiilYn~P~-~tg~~l~~~~~~~La~ 153 (291)
T 3tak_A 109 ---KPTQEGLYQHYKAIAEAV-ELPLILYNVPG-RTGVDLSNDTAVRLAE 153 (291)
T ss_dssp ---CCCHHHHHHHHHHHHHHC-CSCEEEEECHH-HHSCCCCHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHhc-CCCEEEEeccc-ccCCCCCHHHHHHHHc
No 452
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=43.01 E-value=1.4e+02 Score=26.69 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=42.5
Q ss_pred CcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCcc--chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYA--AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~--~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+ ...=..+...|.+.|-.|++..-.-. .....+....+. ...+.+|-. |.+++++++++..+
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~-~~~~~~D~~-----~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS-DIVLQCDVA-----EDASIDTMFAELGK 83 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEECCTT-----CHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCC-cEEEEccCC-----CHHHHHHHHHHHHH
Confidence 346777665 33333455667778887776532221 111112111122 244555432 57888888877665
Q ss_pred hCCCeeEEEEeCC
Q 011801 188 ASINIKGLIITNP 200 (477)
Q Consensus 188 ~~~~~k~vii~nP 200 (477)
.-.++.+|+ +|.
T Consensus 84 ~~g~iD~lv-~~A 95 (265)
T 1qsg_A 84 VWPKFDGFV-HSI 95 (265)
T ss_dssp TCSSEEEEE-ECC
T ss_pred HcCCCCEEE-ECC
Confidence 555677544 444
No 453
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=42.83 E-value=1.8e+02 Score=26.86 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCC-----ccc----CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc
Q 011801 135 GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNN-----FKI----TREALEAAYERAQEASINIKGLIITNPSNPLG 205 (477)
Q Consensus 135 Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~-----f~i----~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG 205 (477)
+-.+.+-.|....+.+..+ .|+..+.+....++. ++. +++.+++.++.+++.|..+.+-+.+....|.+
T Consensus 72 ~~~v~~l~~n~~~i~~a~~--~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~ 149 (295)
T 1ydn_A 72 GVRYSVLVPNMKGYEAAAA--AHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYD 149 (295)
T ss_dssp SSEEEEECSSHHHHHHHHH--TTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTT
T ss_pred CCEEEEEeCCHHHHHHHHH--CCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcC
Confidence 4455343455544444433 377766665432200 112 23444555666666666665545444455666
Q ss_pred cCCCHHHHHHHHHHHHhcCe--EEEec
Q 011801 206 TTLDRDTLKSLVSFINDKNI--HLVCD 230 (477)
Q Consensus 206 ~~~~~~~l~~l~~~~~~~~~--~lI~D 230 (477)
...+.+++.++++.+.+.|+ +-|.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~G~d~i~l~D 176 (295)
T 1ydn_A 150 GPVTPQAVASVTEQLFSLGCHEVSLGD 176 (295)
T ss_dssp EECCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 67788888888887777764 44444
No 454
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=42.65 E-value=1e+02 Score=27.07 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=46.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|.|+...=..+...|.+.|..|++..-.-.. ..+.. |+.. +.+|-. + +++++++++..+.-.++
T Consensus 4 ~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-~~~~--~~~D~~-----~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 4 KALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-GAVP--LPTDLE-----K-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-TCEE--EECCTT-----T-SCHHHHHHHHHHHHTSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-CcEE--EecCCc-----h-HHHHHHHHHHHHHcCCC
Confidence 46777666555556667777888887776443222 22333 5443 444422 2 23333333332222356
Q ss_pred eEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 193 KGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
..++.+--..+.+ .-.+.++++++.+.
T Consensus 72 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 100 (239)
T 2ekp_A 72 HVLVHAAAVNVRKPALELSYEEWRRVLYL 100 (239)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 6544332222222 23466777776653
No 455
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=42.57 E-value=95 Score=26.83 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=37.3
Q ss_pred cEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCcc-chHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 113 RIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYA-AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~-~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.|++|.|+...=..+...|. ..|-.|.+..-.-. ....... . +.++..+.+|-. |.++++++++
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~D~~-----d~~~~~~~~~------- 72 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-D-HERVTVIEGSFQ-----NPGXLEQAVT------- 72 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH-T-STTEEEEECCTT-----CHHHHHHHHT-------
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc-C-CCceEEEECCCC-----CHHHHHHHHc-------
Confidence 37777654443344556666 68877776543321 1111110 1 334444554422 5788888775
Q ss_pred CeeEEEEe
Q 011801 191 NIKGLIIT 198 (477)
Q Consensus 191 ~~k~vii~ 198 (477)
++..|+.+
T Consensus 73 ~~d~vv~~ 80 (221)
T 3r6d_A 73 NAEVVFVG 80 (221)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 45655544
No 456
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=42.42 E-value=68 Score=29.96 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=42.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 21 ~dg~iD~~~l~~lv~~li~~--Gv~gl~~~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 21 QDGSIHYEQLRDLIDWHIEN--GTDGIVAV-GTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp TTSCBCHHHHHHHHHHHHHT--TCCEEEES-STTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEeC-ccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35689999999999876554 56776654 445555679999999999988663 455554
No 457
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.08 E-value=62 Score=30.48 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 22 ~dg~iD~~~l~~lv~~li~~--Gv~Gl~v~-GtTGE~~~Lt~~Er~~v~~~~v~~~grvpVia 81 (313)
T 3dz1_A 22 DDGKIDDVSIDRLTDFYAEV--GCEGVTVL-GILGEAPKLDAAEAEAVATRFIKRAKSMQVIV 81 (313)
T ss_dssp TTSCBCHHHHHHHHHHHHHT--TCSEEEES-TGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCCEEEeC-ccCcChhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 45689999999999876554 56777654 333344679999999999988765 466664
No 458
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=42.04 E-value=44 Score=30.42 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=57.7
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++-..+++|.|+++-=..+...|.+.|-.|++.+-.- ......++.. |.+...+.+|-.+ .+++++.++.
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~-g~~~~~~~~Dv~d-----~~~v~~~~~~--- 77 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKD-GGNASALLIDFAD-----PLAAKDSFTD--- 77 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTTS-----TTTTTTSSTT---
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHh-CCcEEEEEccCCC-----HHHHHHHHHh---
Confidence 3444566666666555566678889998888765332 1233344444 8888888877433 2333333322
Q ss_pred hCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.++.. +++|.. .+.+ .-++.++|+++.++
T Consensus 78 --g~iDi-LVNNAGi~~~~~~~~~~~~~w~~~~~v 109 (247)
T 4hp8_A 78 --AGFDI-LVNNAGIIRRADSVEFSELDWDEVMDV 109 (247)
T ss_dssp --TCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred --CCCCE-EEECCCCCCCCCcccccHHHHHHHHHH
Confidence 25664 566652 3333 23678888888875
No 459
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=41.67 E-value=86 Score=27.05 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=37.3
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccC-HHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKIT-REALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~-~~~l~~~~~~~~~~~~~ 191 (477)
+|++|+|+...=..++..|.+.|..|.+..-.-.... ... +++++..++. | .+.++++++ +
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~~~-~~~~~~~D~~-------d~~~~~~~~~~-------~ 63 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP---QYN-NVKAVHFDVD-------WTPEEMAKQLH-------G 63 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC---CCT-TEEEEECCTT-------SCHHHHHTTTT-------T
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh---hcC-CceEEEeccc-------CCHHHHHHHHc-------C
Confidence 3677765444444555677788877776543322111 112 5555444332 4 677777664 5
Q ss_pred eeEEEEeC
Q 011801 192 IKGLIITN 199 (477)
Q Consensus 192 ~k~vii~n 199 (477)
+..|+.+-
T Consensus 64 ~d~vi~~a 71 (219)
T 3dqp_A 64 MDAIINVS 71 (219)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 66666543
No 460
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=41.42 E-value=81 Score=30.43 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=36.8
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||.
T Consensus 73 ~dg~ID~~al~~lv~~li~~--Gv~Gl~v~-GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 133 (360)
T 4dpp_A 73 PDGRFDLEAYDDLVNIQIQN--GAEGVIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133 (360)
T ss_dssp TTSSBCHHHHHHHHHHHHHT--TCCEEEES-STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEec-ccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34578888888887765544 45666654 233344567888888888776543 455553
No 461
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=41.35 E-value=1.7e+02 Score=25.57 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=50.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-...........+.+++ .+|-. |.+.+++++++ ..
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~D~~-----~~~~~~~~~~~----~~ 75 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPV--CVDLG-----DWDATEKALGG----IG 75 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEE--ECCTT-----CHHHHHHHHTT----CC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcE--EecCC-----CHHHHHHHHHH----cC
Confidence 346777776655545666777778888877654332222222222256655 44322 56777777652 22
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+.+-...+.+. ..+.+++++..+
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 105 (244)
T 1cyd_A 76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFS 105 (244)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCcccCCCCcccCCHHHHHHHHh
Confidence 5666554322222221 245556655544
No 462
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=41.22 E-value=1.2e+02 Score=30.18 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=24.9
Q ss_pred CCcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 202 NPLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 202 NPtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
+|.|..++.+++++|++.|+++||-||
T Consensus 86 ~~~~~~YT~~di~eIv~YA~~rgI~VI 112 (442)
T 2yl5_A 86 DPNGTALTQAEVTELIEYAKSKDIGLI 112 (442)
T ss_dssp CTTCSCBCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCeee
Confidence 567889999999999999999999988
No 463
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=41.01 E-value=1.5e+02 Score=27.08 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCcEEEeCChH--HHHHHHHHHhcCCCCeEEEcCCCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 111 PDRIVMGGGAT--GANELIMFCLANPGDAFLVPSPYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 111 ~~~i~~t~G~t--~al~~i~~~l~~~Gd~vlv~~P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
...+++|.|+. +.=..+...|++.|..|++..-.-.. ........ | .+..+.+|-. |.+++++++++.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~Dv~-----d~~~v~~~~~~~ 102 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-G-VKLTVPCDVS-----DAESVDNMFKVL 102 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-T-CCEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-C-CeEEEEcCCC-----CHHHHHHHHHHH
Confidence 34577777653 33334556677788888776543211 11222222 3 2355666532 578888888776
Q ss_pred HHhCCCeeEEEEeCCC-CCc----c--cCCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS-NPL----G--TTLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NPt----G--~~~~~~~l~~l~~~ 219 (477)
.+.-.++.+++ +|.. .+. + .-.+.++++++.+.
T Consensus 103 ~~~~g~iD~lV-nnAG~~~~~~~~~~~~~~~~~~~~~~~~v 142 (296)
T 3k31_A 103 AEEWGSLDFVV-HAVAFSDKNELKGRYVDTSLGNFLTSMHI 142 (296)
T ss_dssp HHHHSCCSEEE-ECCCCCCHHHHTSCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEE-ECCCcCCcccccCChhhCCHHHHHHHHHH
Confidence 65545677544 4442 211 1 23566666666553
No 464
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=40.93 E-value=1.9e+02 Score=26.55 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=49.7
Q ss_pred CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHH
Q 011801 134 PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTL 213 (477)
Q Consensus 134 ~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l 213 (477)
++..|++..|.|.-| ++++ |++.+.+.-. +.+-.+++.+|.+.++..+++ ++++||.. |..+. ...
T Consensus 178 ~~~~~v~~H~af~Yf---~~~y-Gl~~~~~~~~-~~~~eps~~~l~~l~~~ik~~--~v~~if~e-~~~~~------~~~ 243 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYL---AKRF-GLKQLGISGI-SPEQEPSPRQLKEIQDFVKEY--NVKTIFAE-DNVNP------KIA 243 (286)
T ss_dssp SCCEEEEEESCCHHH---HHHT-TCEEEEEECS-CC---CCHHHHHHHHHHHHHT--TCCEEEEC-TTSCT------HHH
T ss_pred CCCEEEEECCchHHH---HHHC-CCeEeecccc-CCCCCCCHHHHHHHHHHHHHc--CCCEEEEe-CCCCh------HHH
Confidence 578888888887633 4455 9998876532 223357788888888776655 66766654 43222 223
Q ss_pred HHHHHHHHhcCeEEE-ecccc
Q 011801 214 KSLVSFINDKNIHLV-CDEIY 233 (477)
Q Consensus 214 ~~l~~~~~~~~~~lI-~De~y 233 (477)
+. ++++.|+.++ .|...
T Consensus 244 ~~---la~~~g~~v~~l~pl~ 261 (286)
T 3gi1_A 244 HA---IAKSTGAKVKTLSPLE 261 (286)
T ss_dssp HH---HHHTTTCEEEECCCSC
T ss_pred HH---HHHHhCCeEEEecccc
Confidence 33 4668888776 34433
No 465
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.86 E-value=52 Score=31.07 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=26.3
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
...+++++|. .||..++.+.+.+|++- -.|+.=|=|++
T Consensus 135 lPiilYn~P~-~tg~~l~~~~~~~La~~--~pnIvgiKd~~ 172 (313)
T 3dz1_A 135 VPWVLQDYPL-TLSVVMTPKVIRQIVMD--SASCVMLKHED 172 (313)
T ss_dssp SCEEEEECHH-HHCCCCCHHHHHHHHHH--CSSEEEEEECC
T ss_pred CcEEEEeCcc-ccCcCCCHHHHHHHHHh--CCCEEEEEcCC
Confidence 6677888774 48999998777776641 24676676653
No 466
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=40.80 E-value=1.7e+02 Score=25.54 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-...........+.+++ .+|-. |.+++++++++ ..
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~D~~-----~~~~~~~~~~~----~~ 75 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPV--CVDLG-----DWEATERALGS----VG 75 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEE--ECCTT-----CHHHHHHHHTT----CC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEE--EEeCC-----CHHHHHHHHHH----cC
Confidence 345777776655555566677778888777643322222222222255554 44321 56777777652 22
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+ .|.. ...+. -.+.+++++..+
T Consensus 76 ~id~vi-~~Ag~~~~~~~~~~~~~~~~~~~~ 105 (244)
T 3d3w_A 76 PVDLLV-NNAAVALLQPFLEVTKEAFDRSFE 105 (244)
T ss_dssp CCCEEE-ECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEE-ECCccCCCcchhhCCHHHHHHHHH
Confidence 566554 4332 22221 235555655554
No 467
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Probab=40.54 E-value=2.1e+02 Score=29.61 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=53.2
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-CccchHHHHhhhCCcEEEEEeccCCCCcccCH-HHHHHHHHHHHHhCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAAFDRDLSWRTGVQIVPVHCDISNNFKITR-EALEAAYERAQEASI 190 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~-~~l~~~~~~~~~~~~ 190 (477)
.+++|.|+.+.=..+...|...|-.|++.+- .-......++.. |.+.+.+.+ |+ ++.++.+++..++-.
T Consensus 324 valVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~-g~~~~~~~~--------Dv~~~~~~~~~~~~~~~G 394 (604)
T 2et6_A 324 VVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAA-GGEAWPDQH--------DVAKDSEAIIKNVIDKYG 394 (604)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHT-TCEEEEECC--------CHHHHHHHHHHHHHHHHS
T ss_pred eEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhc-CCeEEEEEc--------ChHHHHHHHHHHHHHhcC
Confidence 4566665555445566778888988887642 111122223333 666665554 34 445555555444434
Q ss_pred CeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
++.+ +++|.. ...+ .-++.++++++++.
T Consensus 395 ~iDi-LVnNAGi~~~~~~~~~~~~~~~~~~~v 425 (604)
T 2et6_A 395 TIDI-LVNNAGILRDRSFAKMSKQEWDSVQQV 425 (604)
T ss_dssp CCCE-EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCCE-EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 6774 555553 2223 23577788887764
No 468
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=40.41 E-value=36 Score=26.08 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCe-EEEeccccc
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNI-HLVCDEIYA 234 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~-~lI~De~y~ 234 (477)
+.-+.+.|++.+++. ++..|++--|-|..|+.-+.. ..++.++..++.++ +..+||-++
T Consensus 36 ~~~~~~~l~~li~e~-----~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 36 LEEDVEALLDFVRRE-----GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHHH-----TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred cHHHHHHHHHHHHHc-----CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 345678888888776 788999999988878765422 23333333222254 445788764
No 469
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=39.66 E-value=1.8e+02 Score=26.26 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=51.2
Q ss_pred CcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|+|+ ...=..+...|++.|..|++..-.-.. ....+....|. +..+.+|-. |.+.+++++++..+
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~-----~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGS-DLVVKCDVS-----LDEDIKNLKKFLEE 95 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTC-CCEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEcCCC-----CHHHHHHHHHHHHH
Confidence 356777665 333334555677788877765432221 11112111132 344555532 57888888877665
Q ss_pred hCCCeeEEEEeCCC-CCc----cc--CCCHHHHHHHHH
Q 011801 188 ASINIKGLIITNPS-NPL----GT--TLDRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~-NPt----G~--~~~~~~l~~l~~ 218 (477)
.-.++.+|+ +|.. .+. +. ..+.+++++..+
T Consensus 96 ~~g~iD~lv-~~Ag~~~~~~~~~~~~~~~~~~~~~~~~ 132 (285)
T 2p91_A 96 NWGSLDIIV-HSIAYAPKEEFKGGVIDTSREGFKIAMD 132 (285)
T ss_dssp HTSCCCEEE-ECCCCCCGGGGSSCGGGCCHHHHHHHHH
T ss_pred HcCCCCEEE-ECCCCCCcccCCCCcccCCHHHHHHHHH
Confidence 555777654 4442 221 11 346666666655
No 470
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=39.64 E-value=1.8e+02 Score=26.01 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCcEEEeCChH-HHH-HHHHHHhcCCCCeEEEcCCCccch---HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 110 DPDRIVMGGGAT-GAN-ELIMFCLANPGDAFLVPSPYYAAF---DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 110 ~~~~i~~t~G~t-~al-~~i~~~l~~~Gd~vlv~~P~y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+-..+++|.++. .+| ..+...|.+.|-.|++..-.-... ...++...+.++..+++|-. +.+++++.+++
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~ 79 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQ-----SDEEVINGFEQ 79 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTT-----CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCC-----CHHHHHHHHHH
Confidence 344567776432 233 345567788898888765432222 22333332456667777643 57888888877
Q ss_pred HHHhCCCeeEEEEeCC
Q 011801 185 AQEASINIKGLIITNP 200 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP 200 (477)
..++-.++.. +++|.
T Consensus 80 ~~~~~G~iD~-lvnnA 94 (256)
T 4fs3_A 80 IGKDVGNIDG-VYHSI 94 (256)
T ss_dssp HHHHHCCCSE-EEECC
T ss_pred HHHHhCCCCE-EEecc
Confidence 6665557775 44444
No 471
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.46 E-value=1.3e+02 Score=26.19 Aligned_cols=97 Identities=8% Similarity=0.026 Sum_probs=45.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccc-------hHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAA-------FDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~-------~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
++..+.+.-...++..+...+. ..+.+|++..+.-.. ....++.. |.+++.+.. .+..+++.
T Consensus 60 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~-G~~v~~LG~------~vp~~~l~ 132 (210)
T 1y80_A 60 PEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESG-GFTVYNLGV------DIEPGKFV 132 (210)
T ss_dssp -------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHT-TCEEEECCS------SBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHC-CCEEEECCC------CCCHHHHH
Confidence 3444444444445544332332 123466666544221 12334444 898876653 36788888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+++++. ++.+|.++.-. ++ +.+.++++++.+++.+
T Consensus 133 ~~~~~~-----~~d~v~lS~~~-~~----~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 133 EAVKKY-----QPDIVGMSALL-TT----TMMNMKSTIDALIAAG 167 (210)
T ss_dssp HHHHHH-----CCSEEEEECCS-GG----GTHHHHHHHHHHHHTT
T ss_pred HHHHHc-----CCCEEEEeccc-cc----cHHHHHHHHHHHHhcC
Confidence 888765 77777776432 21 3456888888887754
No 472
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A
Probab=39.41 E-value=1.3e+02 Score=29.96 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=51.0
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC--ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPY--YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~--y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.+++|.|+.+.=..+...|.+.|-+|++..-. -.......... +..++ .+|-. |.+++++++++..+...
T Consensus 215 ~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~-~~~~~--~~Dvt-----d~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 215 VAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKV-GGTAL--TLDVT-----ADDAVDKITAHVTEHHG 286 (454)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHH-TCEEE--ECCTT-----STTHHHHHHHHHHHHST
T ss_pred EEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-CCeEE--EEecC-----CHHHHHHHHHHHHHHcC
Confidence 35555554443345556677888887765421 11122223333 55554 44422 35667777766554433
Q ss_pred -CeeEEEEeCCCCCcc--cCCCHHHHHHHHHH
Q 011801 191 -NIKGLIITNPSNPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 -~~k~vii~nP~NPtG--~~~~~~~l~~l~~~ 219 (477)
++.+|+.+--....+ .-++.++++++.+.
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~ 318 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAV 318 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHH
Confidence 477655433222233 23577777777653
No 473
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=38.90 E-value=1.3e+02 Score=27.20 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
++-..+++|.|+++-=..+...|++.|-.|++..-.-. + . ..+.+.+.+|-. +.+++++.+++..++
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~------~-~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP------E-G-LPEELFVEADLT-----TKEGCAIVAEATRQR 75 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC------T-T-SCTTTEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch------h-C-CCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 33345666666655545566778889988887653211 1 1 112223455432 578888888877666
Q ss_pred CCCeeEEEEeCCC--CCc-c--cCCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS--NPL-G--TTLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~--NPt-G--~~~~~~~l~~l~~~ 219 (477)
-.++.. +++|.. .+. | .-++.++++++.+.
T Consensus 76 ~G~iDi-lVnnAG~~~~~~~~~~~~~~e~~~~~~~v 110 (261)
T 4h15_A 76 LGGVDV-IVHMLGGSSAAGGGFSALSDDDWYNELSL 110 (261)
T ss_dssp TSSCSE-EEECCCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred cCCCCE-EEECCCCCccCCCCcccCCHHHHHHHHHH
Confidence 567875 555542 222 2 24677888887764
No 474
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=38.67 E-value=44 Score=34.52 Aligned_cols=24 Identities=8% Similarity=0.354 Sum_probs=22.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 205 GTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 205 G~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
|..++.+++++|++.|+++||-||
T Consensus 250 ~~~YT~~di~eiv~yA~~rgI~VI 273 (572)
T 3ozo_A 250 QKVYTKAAIREVVRFGLERGVRVL 273 (572)
T ss_dssp SSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCHHHHHHHHHHHHHhCCcee
Confidence 568999999999999999999888
No 475
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=38.56 E-value=1.7e+02 Score=27.01 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=48.3
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.|++|+|+...=..++..|.+.|..|.+..-.-......+....++++ +.+|- -|.+.++++++.. ++
T Consensus 23 ~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~--~~~Dl-----~d~~~~~~~~~~~-----~~ 90 (333)
T 2q1w_A 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTF--VEGSI-----ADHALVNQLIGDL-----QP 90 (333)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEE--EECCT-----TCHHHHHHHHHHH-----CC
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceE--EEEeC-----CCHHHHHHHHhcc-----CC
Confidence 577776544333444556666787776653221111111111114444 34332 1567788877642 56
Q ss_pred eEEEEeCCCCCcccCCCH-------HHHHHHHHHHHhcCe
Q 011801 193 KGLIITNPSNPLGTTLDR-------DTLKSLVSFINDKNI 225 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~-------~~l~~l~~~~~~~~~ 225 (477)
.+|+-+-.....+ .... .-...+++.|.+.++
T Consensus 91 D~vih~A~~~~~~-~~~~~~~~~N~~~~~~l~~a~~~~~~ 129 (333)
T 2q1w_A 91 DAVVHTAASYKDP-DDWYNDTLTNCVGGSNVVQAAKKNNV 129 (333)
T ss_dssp SEEEECCCCCSCT-TCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred cEEEECceecCCC-ccCChHHHHHHHHHHHHHHHHHHhCC
Confidence 7666553322222 1111 113467777776654
No 476
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=38.15 E-value=1.6e+02 Score=26.01 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=49.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.. +. ... .+.+|-. |.+++++++++..+...+
T Consensus 16 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~---~~~--~~~~D~~-----~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 16 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----PK---GLF--GVEVDVT-----DSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC----CT---TSE--EEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH----HH---Hhc--CeeccCC-----CHHHHHHHHHHHHHHcCC
Confidence 456666665554455667777888887765422111 11 111 2445432 577888887766554456
Q ss_pred eeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
+..|+.+-...+.+ ...+.+++++..+
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVIN 110 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 77655443222222 2346666666655
No 477
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.03 E-value=66 Score=30.09 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=41.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc----CeEEEe
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK----NIHLVC 229 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~----~~~lI~ 229 (477)
+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 22 dg~iD~~~l~~lv~~li~~--Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia 82 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIEN--GIDAVVPV-GTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA 82 (301)
T ss_dssp TTEECHHHHHHHHHHHHHT--TCCEEECS-STTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 4579999999999876554 56676554 344455679999999999988764 466664
No 478
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=37.78 E-value=1.4e+02 Score=28.17 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=43.2
Q ss_pred ccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC--
Q 011801 42 QLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG-- 119 (477)
Q Consensus 42 ~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G-- 119 (477)
.+|++.-+...+...+.+...- ..|++.|.....|+ ....+-+++++++.. | .+..+++++++=
T Consensus 38 ~lglGt~~~~~~~~~~~v~~Al------~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~--g---~~~R~~v~I~TK~~ 103 (335)
T 3h7u_A 38 SVGLGTWQASPGLVGDAVAAAV------KIGYRHIDCAQIYG---NEKEIGAVLKKLFED--R---VVKREDLFITSKLW 103 (335)
T ss_dssp SBCEECTTCCHHHHHHHHHHHH------HHTCCEEECCGGGS---CHHHHHHHHHHHHHT--T---SCCGGGCEEEEEEC
T ss_pred ceeEeCCcCCHHHHHHHHHHHH------HcCCCEEECCcccC---CHHHHHHHHHHHHhc--C---CCCcceeEEEeeeC
Confidence 3455544444443444443321 14555565556675 234555666655431 1 023566666531
Q ss_pred --------hHHHHHHHHHHh-cCCCCeEEEcCCC
Q 011801 120 --------ATGANELIMFCL-ANPGDAFLVPSPY 144 (477)
Q Consensus 120 --------~t~al~~i~~~l-~~~Gd~vlv~~P~ 144 (477)
...+++..+.-| .+-=|-+++..|.
T Consensus 104 ~~~~~~~~v~~~~e~SL~rLg~dyiDl~llH~p~ 137 (335)
T 3h7u_A 104 CTDHDPQDVPEALNRTLKDLQLEYVDLYLIHWPA 137 (335)
T ss_dssp GGGCSTTHHHHHHHHHHHHHTCSCBSEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEcCCC
Confidence 233444444444 2333778887774
No 479
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=37.78 E-value=1.2e+02 Score=27.96 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCC
Q 011801 91 FRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNN 170 (477)
Q Consensus 91 lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~ 170 (477)
+++.|.-+.. .+|.+..|+|= ++.++ ..| .+..|.+.++.. |...+.+. ++.
T Consensus 82 l~ekI~l~~~-----------~gV~v~~GGTl-fE~~l----~qg--------~~~~yl~~~k~l-GF~~IEIS---dGt 133 (276)
T 1u83_A 82 LEEKISTLKE-----------HDITFFFGGTL-FEKYV----SQK--------KVNEFHRYCTYF-GCEYIEIS---NGT 133 (276)
T ss_dssp HHHHHHHHHH-----------TTCEEEECHHH-HHHHH----HTT--------CHHHHHHHHHHT-TCSEEEEC---CSS
T ss_pred HHHHHHHHHH-----------cCCeEeCCcHH-HHHHH----HcC--------cHHHHHHHHHHc-CCCEEEEC---CCc
Confidence 8888877764 35888888873 33322 133 577888888887 99999886 355
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCC--CCC-cccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNP--SNP-LGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP--~NP-tG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
..++.+...+.++++.+ .. .+++.- -+| .....+.+++.+.++.+-+.|+..|+=|+
T Consensus 134 i~l~~~~~~~lI~~a~~---~f--~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 134 LPMTNKEKAAYIADFSD---EF--LVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp SCCCHHHHHHHHHHHTT---TS--EEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred ccCCHHHHHHHHHHHHh---hc--EEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 67889999999987632 22 233332 223 34556777787887777778987776665
No 480
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=37.50 E-value=1.8e+02 Score=25.84 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCcEEEeCCh--HHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGA--TGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~--t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+ ...=..+...|.+.|..|++..-.-.. ....+....+. +..+.+|-. |.+++++++++..
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~-~~~~~~D~~-----~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGG-ALLFRADVT-----QDEELDALFAGVK 81 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTC-CEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEECCCC-----CHHHHHHHHHHHH
Confidence 3457777765 333334555666778777765432210 11112111132 444555532 5778888777665
Q ss_pred HhCCCeeEEEEeCCC-CCc----cc--CCCHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS-NPL----GT--TLDRDTLKSLVS 218 (477)
Q Consensus 187 ~~~~~~k~vii~nP~-NPt----G~--~~~~~~l~~l~~ 218 (477)
+.-.++..|+ +|.. .+. +. -.+.+++++..+
T Consensus 82 ~~~g~iD~lv-~~Ag~~~~~~~~~~~~~~~~~~~~~~~~ 119 (261)
T 2wyu_A 82 EAFGGLDYLV-HAIAFAPREAMEGRYIDTRRQDWLLALE 119 (261)
T ss_dssp HHHSSEEEEE-ECCCCCCHHHHSSCGGGCCHHHHHHHHH
T ss_pred HHcCCCCEEE-ECCCCCCcccCCCCcccCCHHHHHHHHH
Confidence 5445677544 4442 221 21 246666666555
No 481
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=37.30 E-value=97 Score=27.83 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=44.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+...=..+...|.+.|..|++..-.-...... +... .+.++..+.+|-. |.++++++++...+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA-----DQQQLRDTFRKVVD 82 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCC-----CHHHHHHHHHHHHH
Confidence 3567776655544556677778898887754332221111 1110 1334566666532 57788888776554
Q ss_pred hCCCeeEEE
Q 011801 188 ASINIKGLI 196 (477)
Q Consensus 188 ~~~~~k~vi 196 (477)
.-.++.+|+
T Consensus 83 ~~g~id~lv 91 (267)
T 2gdz_A 83 HFGRLDILV 91 (267)
T ss_dssp HHSCCCEEE
T ss_pred HcCCCCEEE
Confidence 444677544
No 482
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=37.29 E-value=88 Score=29.09 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+.
T Consensus 13 ~dg~iD~~~l~~lv~~li~~--Gv~gl~~~-GttGE~~~Ls~eEr~~v~~~~~~~ 64 (293)
T 1w3i_A 13 KDNRIDKEKLKIHAENLIRK--GIDKLFVN-GTTGLGPSLSPEEKLENLKAVYDV 64 (293)
T ss_dssp TTSSBCHHHHHHHHHHHHHT--TCCEEEES-STTTTGGGSCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHH
Confidence 34579999999988876554 46676654 344445678999999999988764
No 483
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=37.25 E-value=1.1e+02 Score=26.46 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=37.7
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.|++|+|+...=..++..|.+.|..|.+..-.-.... ....++++ +.+|- .|.+.++++++ ++
T Consensus 6 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~--~~~Dl-----~d~~~~~~~~~-------~~ 68 (227)
T 3dhn_A 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK---IENEHLKV--KKADV-----SSLDEVCEVCK-------GA 68 (227)
T ss_dssp EEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCC---CCCTTEEE--ECCCT-----TCHHHHHHHHT-------TC
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccch---hccCceEE--EEecC-----CCHHHHHHHhc-------CC
Confidence 5777776444444555677778887776654322111 11114444 33332 26788888775 46
Q ss_pred eEEEEe
Q 011801 193 KGLIIT 198 (477)
Q Consensus 193 k~vii~ 198 (477)
.+|+.+
T Consensus 69 d~vi~~ 74 (227)
T 3dhn_A 69 DAVISA 74 (227)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 666654
No 484
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=37.02 E-value=1.3e+02 Score=29.80 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=24.7
Q ss_pred CCcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 202 NPLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 202 NPtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
+|.|..++.+++++|++.|+++||-||
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VI 109 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLI 109 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 456789999999999999999999988
No 485
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=36.81 E-value=82 Score=29.27 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCcccCHHHHHHHHHHHHH-hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEE
Q 011801 169 NNFKITREALEAAYERAQE-ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLV 228 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~-~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI 228 (477)
.+..+|.+.+++.++...+ . .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||
T Consensus 17 ~dg~iD~~~l~~lv~~li~~~--Gv~gl~~~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi 77 (293)
T 1f6k_A 17 EDGTINEKGLRQIIRHNIDKM--KVDGLYVG-GSTGENFMLSTEEKKEIFRIAKDEAKDQIALI 77 (293)
T ss_dssp TTSCBCHHHHHHHHHHHHHTS--CCSEEEES-SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCcCHHHHHHHHHHHHhhC--CCcEEEeC-ccccchhhCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 3568999999999887655 4 46676654 333334678999999999988753 45555
No 486
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=36.79 E-value=88 Score=29.75 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 49 dg~iD~~~l~~lv~~li~~--Gv~Gl~v~-GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 108 (332)
T 2r8w_A 49 AGRVDIEAFSALIARLDAA--EVDSVGIL-GSTGIYMYLTREERRRAIEAAATILRGRRTLMA 108 (332)
T ss_dssp TCCBCHHHHHHHHHHHHHH--TCSEEEES-STTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 4578999988888766554 45666554 333344568889988888887653 355553
No 487
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=36.63 E-value=71 Score=30.13 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc---CeEEEe
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK---NIHLVC 229 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~---~~~lI~ 229 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+. ++.||+
T Consensus 37 ~dg~iD~~~l~~lv~~li~~--Gv~Gl~v~-GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 97 (314)
T 3qze_A 37 AQGRLDWDSLAKLVDFHLQE--GTNAIVAV-GTTGESATLDVEEHIQVIRRVVDQVKGRIPVIA 97 (314)
T ss_dssp TTSCBCHHHHHHHHHHHHHH--TCCEEEES-SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35589999999988876555 56676654 334444678999999999987653 355553
No 488
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=36.55 E-value=85 Score=29.10 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+.
T Consensus 14 dg~iD~~~l~~lv~~li~~--Gv~gl~v~-GtTGE~~~Ls~eEr~~v~~~~~~~ 64 (288)
T 2nuw_A 14 QGKVNVDALKTHAKNLLEK--GIDAIFVN-GTTGLGPALSKDEKRQNLNALYDV 64 (288)
T ss_dssp TSCBCHHHHHHHHHHHHHT--TCCEEEET-STTTTGGGSCHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHH
Confidence 4578999988888766554 45676554 334444678899999999888764
No 489
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=36.51 E-value=54 Score=28.83 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.3
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
-.|..+.+|+..--.|+.|+... +.++.+++++||+.+|.
T Consensus 155 LAGl~Pa~vicEi~~~~dG~mar---~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 155 LAGLQPAGVICELVRDEDGLMMR---LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp HTTSCSBEEEEEBBCTTTCCBCB---HHHHHHHHHHHTCCEEE
T ss_pred HcCCCceEEEEEEeECCCCCcCC---HHHHHHHHHHcCCcEEE
Confidence 34667777666555689999999 55566777799987763
No 490
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=36.23 E-value=1e+02 Score=28.95 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=53.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCC--ccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPY--YAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~--y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
..|++|+|+...=..++..|.+.|..|.+. ... .+.-.. .+... |++++..++. |.+.+.+++++.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~-~v~~~~~Dl~-------d~~~l~~~~~~~ 82 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDK-GAIIVYGLIN-------EQEAMEKILKEH 82 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHT-TCEEEECCTT-------CHHHHHHHHHHT
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhC-CcEEEEeecC-------CHHHHHHHHhhC
Confidence 468887763322233444555556544433 322 111111 12223 7777655542 578888888753
Q ss_pred HHhCCCeeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcC-eEEEeccccc
Q 011801 186 QEASINIKGLIITNPS-NPLGTTLDRDTLKSLVSFINDKN-IHLVCDEIYA 234 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~-~~lI~De~y~ 234 (477)
++..||.+-.. |..| -..|++.|++.+ +..++=..|.
T Consensus 83 -----~~d~Vi~~a~~~n~~~-------~~~l~~aa~~~g~v~~~v~S~~g 121 (346)
T 3i6i_A 83 -----EIDIVVSTVGGESILD-------QIALVKAMKAVGTIKRFLPSEFG 121 (346)
T ss_dssp -----TCCEEEECCCGGGGGG-------HHHHHHHHHHHCCCSEEECSCCS
T ss_pred -----CCCEEEECCchhhHHH-------HHHHHHHHHHcCCceEEeecccC
Confidence 56666655432 3333 367888888887 5333323443
No 491
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=35.92 E-value=93 Score=28.94 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+.
T Consensus 17 ~dg~iD~~~l~~lv~~li~~--Gv~gl~~~-GttGE~~~Ls~~Er~~v~~~~~~~ 68 (294)
T 3b4u_A 17 TDGTVDIDAMIAHARRCLSN--GCDSVTLF-GTTGEGCSVGSRERQAILSSFIAA 68 (294)
T ss_dssp TTSSBCHHHHHHHHHHHHHT--TCSEEEES-STTTTGGGSCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccChhhCCHHHHHHHHHHHHHH
Confidence 34589999999998876555 46676654 344445679999999999988764
No 492
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=35.72 E-value=1.2e+02 Score=27.23 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=44.3
Q ss_pred EEEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 114 IVMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
|++|+|+...=..++..|.+. |..|.+..-.-.... .+... +++++..++. |.+.++++++ +
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~~~-~~~~~~~D~~-------d~~~~~~~~~-------~ 65 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ-ALAAQ-GITVRQADYG-------DEAALTSALQ-------G 65 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH-HHHHT-TCEEEECCTT-------CHHHHHHHTT-------T
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh-hhhcC-CCeEEEcCCC-------CHHHHHHHHh-------C
Confidence 666665333333444566665 766655432211121 12223 6665543322 5677877765 4
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCe
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNI 225 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~ 225 (477)
+..|+.+....+.. ...-.+.+++.|.+.++
T Consensus 66 ~d~vi~~a~~~~~~---~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 66 VEKLLLISSSEVGQ---RAPQHRNVINAAKAAGV 96 (286)
T ss_dssp CSEEEECC-----------CHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCchH---HHHHHHHHHHHHHHcCC
Confidence 56666543322211 12235677777776654
No 493
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=35.56 E-value=60 Score=26.61 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=40.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHH-HHHHHHHHH-hcCe-EEEeccccc
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDT-LKSLVSFIN-DKNI-HLVCDEIYA 234 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~-l~~l~~~~~-~~~~-~lI~De~y~ 234 (477)
+..+.+.|++.+++. ++..|++.-|-|..|+.-+..+ .++.++..+ +.++ +..+||-++
T Consensus 38 ~~~~~~~l~~li~e~-----~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 38 GTPDWNIIERLLKEW-----QPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp TEECHHHHHHHHHHH-----CCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred cchHHHHHHHHHHHc-----CCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 456789999999876 7889999999999897654432 333333322 2354 456899876
No 494
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=35.47 E-value=74 Score=28.88 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=51.0
Q ss_pred EEEeCChHHHHHHHHHHhcCC-CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 114 IVMGGGATGANELIMFCLANP-GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~-Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
|++|+|+...=..++..|.+. |..|.+..-.-.... .+... +++++..++. |.+.++++++ .+
T Consensus 3 ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~-~~~~~-~v~~~~~D~~-------d~~~l~~~~~-------~~ 66 (289)
T 3e48_A 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP-DDWRG-KVSVRQLDYF-------NQESMVEAFK-------GM 66 (289)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC-GGGBT-TBEEEECCTT-------CHHHHHHHTT-------TC
T ss_pred EEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH-HhhhC-CCEEEEcCCC-------CHHHHHHHHh-------CC
Confidence 677665322222333445554 765555432211111 12223 6666554432 5788888775 56
Q ss_pred eEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCe-EEEecccc
Q 011801 193 KGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNI-HLVCDEIY 233 (477)
Q Consensus 193 k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~-~lI~De~y 233 (477)
..|+.+... ++.. ......+.+++.|++.++ .+|.=..|
T Consensus 67 d~vi~~a~~~~~~~--~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 67 DTVVFIPSIIHPSF--KRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp SEEEECCCCCCSHH--HHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CEEEEeCCCCccch--hhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 666655332 2211 123446788888888774 34433334
No 495
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.21 E-value=1.8e+02 Score=27.28 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCccCCCcEEEeCC---hHHHHHHHHHHhcCCCCeEEEcCCCccc--------hHHHHhhhCCcEE
Q 011801 92 RQAVAKFMGKGRGGRVTFDPDRIVMGGG---ATGANELIMFCLANPGDAFLVPSPYYAA--------FDRDLSWRTGVQI 160 (477)
Q Consensus 92 r~aia~~~~~~~g~~~~~~~~~i~~t~G---~t~al~~i~~~l~~~Gd~vlv~~P~y~~--------~~~~~~~~~g~~~ 160 (477)
|..+.+...+.-+.+++ |++..| ..++++.+-.+-.-.-|.+++..|+|.. |.+.+...+++.+
T Consensus 77 r~~v~~~~v~~~~grvp-----ViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPi 151 (315)
T 3si9_A 77 HKRIIELCVEQVAKRVP-----VVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPI 151 (315)
T ss_dssp HHHHHHHHHHHHTTSSC-----BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHhCCCCc-----EEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCE
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+-+.++...+..++++.+.+..++ .+++.+|
T Consensus 152 ilYn~P~~tg~~l~~~~~~~La~~----~pnIvgi 182 (315)
T 3si9_A 152 IIYNIPSRSVIDMAVETMRDLCRD----FKNIIGV 182 (315)
T ss_dssp EEEECHHHHSCCCCHHHHHHHHHH----CTTEEEE
T ss_pred EEEeCchhhCCCCCHHHHHHHHhh----CCCEEEE
No 496
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=34.78 E-value=1e+02 Score=29.92 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
+.++..+.++.+.+. ..+.|+. +=+-|-+. ..-.+++++|+++|+++|+-+|+|=.=.. |..-. .
T Consensus 39 ~~~~~~~Yi~~a~~~--Gf~~IFT-SL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~--~~~Lg-~-------- 104 (385)
T 1x7f_A 39 TKEKDMAYISAAARH--GFSRIFT-CLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAV--FDQLG-I-------- 104 (385)
T ss_dssp CHHHHHHHHHHHHTT--TEEEEEE-EECCC--------HHHHHHHHHHHHTTCEEEEEECTTC--C--------------
T ss_pred CHHHHHHHHHHHHHC--CCCEEEc-cCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHH--HHHcC-C--------
Confidence 456666677766544 4555544 34444332 23356899999999999999999975432 22110 0
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
.++.+ ++=|.+|+.|+|+=+=..
T Consensus 105 ---s~~dl----~~f~~lGi~gLRLD~Gf~ 127 (385)
T 1x7f_A 105 ---SYSDL----SFFAELGADGIRLDVGFD 127 (385)
T ss_dssp ----CCCT----HHHHHHTCSEEEESSCCS
T ss_pred ---CHHHH----HHHHHcCCCEEEEcCCCC
Confidence 11111 334778889999866554
No 497
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=34.69 E-value=1.4e+02 Score=26.99 Aligned_cols=75 Identities=15% Similarity=0.324 Sum_probs=46.9
Q ss_pred HHHhhhCCcE-EEEEeccCCCC-----------cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHH
Q 011801 150 RDLSWRTGVQ-IVPVHCDISNN-----------FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKS 215 (477)
Q Consensus 150 ~~~~~~~g~~-~~~v~~~~~~~-----------f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~ 215 (477)
..++.. |.+ ++.+|+.+.+. -.++.++++..++.+.+.=+...+| ||-+|..+ +++-.+.
T Consensus 46 ~~A~~~-G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~Gv-----nNHmGS~~T~~~~~m~~ 119 (245)
T 2nly_A 46 EIAQAA-GLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGL-----NNHMGSKIVENEKIMRA 119 (245)
T ss_dssp HHHHHT-TCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEE-----EEEECTTGGGCHHHHHH
T ss_pred HHHHHC-CCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEE-----ecccccchhcCHHHHHH
Confidence 344444 776 45666644321 1356788888888776654444443 25567654 5667999
Q ss_pred HHHHHHhcCeEEEecc
Q 011801 216 LVSFINDKNIHLVCDE 231 (477)
Q Consensus 216 l~~~~~~~~~~lI~De 231 (477)
+++.++++|++++ |.
T Consensus 120 vm~~l~~~gL~fv-DS 134 (245)
T 2nly_A 120 ILEVVKEKNAFII-DS 134 (245)
T ss_dssp HHHHHHHTTCEEE-EC
T ss_pred HHHHHHHCCCEEE-cC
Confidence 9999999996544 54
No 498
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=34.49 E-value=2.2e+02 Score=25.94 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCcEEEeCChH--HHHHHHHHHhcCCCCeEEEcCCCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 111 PDRIVMGGGAT--GANELIMFCLANPGDAFLVPSPYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 111 ~~~i~~t~G~t--~al~~i~~~l~~~Gd~vlv~~P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
...+++|.|+. +.=..+...|++.|..|++..-.-.. ........ + ++..+.+|-. |.+.+++++++.
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~Dv~-----d~~~v~~~~~~~ 103 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-G-AFVAGHCDVA-----DAASIDAVFETL 103 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-T-CEEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-C-CceEEECCCC-----CHHHHHHHHHHH
Confidence 34577777653 23334556677788888776433111 11112222 2 4556666642 578888888877
Q ss_pred HHhCCCeeEEEEeCCC-CC----cc--cCCCHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS-NP----LG--TTLDRDTLKSLVS 218 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~-NP----tG--~~~~~~~l~~l~~ 218 (477)
.+.-.++.+++ +|.. .+ .+ .-.+.+++++..+
T Consensus 104 ~~~~g~iD~lV-nnAG~~~~~~~~~~~~~~~~~~~~~~~~ 142 (293)
T 3grk_A 104 EKKWGKLDFLV-HAIGFSDKDELTGRYIDTSEANFTNTML 142 (293)
T ss_dssp HHHTSCCSEEE-ECCCCCCHHHHTSCGGGCCHHHHHHHHH
T ss_pred HHhcCCCCEEE-ECCccCCcccccccccccCHHHHHHHHH
Confidence 66655777644 4442 21 12 1345666666655
No 499
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=34.48 E-value=1e+02 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
.+..+|.+.+++.++...+. .+.+|+++ -++=-+..++.+|.+++++.+.+.
T Consensus 15 ~dg~iD~~~l~~lv~~li~~--Gv~gl~~~-GttGE~~~Ls~~Er~~v~~~~~~~ 66 (292)
T 2ojp_A 15 EKGNVCRASLKKLIDYHVAS--GTSAIVSV-GTTGESATLNHDEHADVVMMTLDL 66 (292)
T ss_dssp TTSCBCHHHHHHHHHHHHHH--TCCEEEES-STTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHc--CCCEEEEC-ccccchhhCCHHHHHHHHHHHHHH
Confidence 35689999999998876555 46676654 344445679999999999988753
No 500
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=34.43 E-value=1.3e+02 Score=26.70 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=42.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCe-EEEcCCCc-cchHHHHh-hhCCcEEEEEeccCCCCcccCH-HHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDA-FLVPSPYY-AAFDRDLS-WRTGVQIVPVHCDISNNFKITR-EALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~-vlv~~P~y-~~~~~~~~-~~~g~~~~~v~~~~~~~f~i~~-~~l~~~~~~~~ 186 (477)
...+++|.|+...=..+...|++.|.. |++..-.- ......+. ...+.++..+.+|-. |. +++++++++..
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVT-----VPVAESKKLLKKIF 79 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTT-----SCHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecC-----CChHHHHHHHHHHH
Confidence 345778866554444555667778864 55443221 11111121 111456666776643 33 66777776554
Q ss_pred HhCCCeeEEE
Q 011801 187 EASINIKGLI 196 (477)
Q Consensus 187 ~~~~~~k~vi 196 (477)
+...++.+|+
T Consensus 80 ~~~g~id~lv 89 (254)
T 1sby_A 80 DQLKTVDILI 89 (254)
T ss_dssp HHHSCCCEEE
T ss_pred HhcCCCCEEE
Confidence 4434677544
Done!