BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011802
(477 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 261/504 (51%), Positives = 346/504 (68%), Gaps = 42/504 (8%)
Query: 2 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 61
+SL+RNMGSEFSC+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIF
Sbjct: 108 TSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIF 167
Query: 62 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 121
LFGA+TVYR+I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E
Sbjct: 168 LFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEK 227
Query: 122 ACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 181
AC++V+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K + +NG +
Sbjct: 228 ACELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDP 285
Query: 182 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 241
+R QVIDA+ NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYIL
Sbjct: 286 ERLEEIKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYIL 345
Query: 242 PKIAERDLRRFANLRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEES 299
PK+AER+LRRFANL++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW +
Sbjct: 346 PKVAERNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDL 405
Query: 300 YGLKSSVVPADLIESACPEKIVEFEERRALRQPKK---------SKPKSSAAEIDQKLQA 350
GL+SS+VPADL+E ACPEKI+EF+E+ A ++ K S P S++ ++ L+
Sbjct: 406 EGLESSIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLEL 465
Query: 351 LMLDIESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL-LLDAESKSNAN------- 402
LD+ NST S SR + E + + + L L+D+ + N N
Sbjct: 466 QHLDL---NST----SLVSRSTLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRD 518
Query: 403 -----MSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRI---REMSDQPINT-IELSDSET 452
MS +P + E+IDL+SP P + R+VSR ++ D + T IELSDSET
Sbjct: 519 RLGVGMSSFP---LYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSET 575
Query: 453 EKSPELERKARALRMFIASIRDDI 476
+ E +KAR LR+F+ +IR DI
Sbjct: 576 DDE-EHCKKARELRIFLQNIRKDI 598
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/395 (53%), Positives = 285/395 (72%), Gaps = 21/395 (5%)
Query: 3 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 62
SLRRN GSEFSCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FL
Sbjct: 111 SLRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFL 170
Query: 63 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 122
FGARTVYRD+++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+A
Sbjct: 171 FGARTVYRDVFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETA 230
Query: 123 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 182
C++VKSVGDN++L +I S G+ ++ K K G NK + + + + +
Sbjct: 231 CRLVKSVGDNLILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQD 283
Query: 183 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 242
+ F VI+AY PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILP
Sbjct: 284 SDGQFRDVINAYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILP 343
Query: 243 KIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGL 302
KIAER+LRRF++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL
Sbjct: 344 KIAERELRRFSDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGL 403
Query: 303 KSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALML 353
+ SVVP DL++SACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L
Sbjct: 404 QVSVVPGDLVKSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLL 460
Query: 354 DIESENSTSSNASFSSRVVMSEDWTAATE--IDLT 386
IE+++ A+ S ++ +T A E +DL+
Sbjct: 461 GIEADSGGILGATASVCQTLTAAYTVAVEDVVDLS 495
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 144/304 (47%), Gaps = 56/304 (18%)
Query: 4 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 63
L RN S S M E + L G+P + EAEAQCA + +L DG + DSD+FLF
Sbjct: 914 LERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLF 973
Query: 64 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
GAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G +A
Sbjct: 974 GARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAI 1032
Query: 124 QIVKSVGDNVVLQRIAS---------EGLSFVKRAKNSKKEGWSFKCNNK---------- 164
++V + + LQ+ G + K KK G S +NK
Sbjct: 1033 EVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISGASTDD 1091
Query: 165 -EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA 219
EE ++Q V+ H + P VI AY NP+ L+ F
Sbjct: 1092 TEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTEKFSWG 1140
Query: 220 R-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANLRANTL 260
+ L ++C + F W +KTDE +LP + E + R RFA +R+ +
Sbjct: 1141 KPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKIRSKRI 1200
Query: 261 ALGV 264
V
Sbjct: 1201 NKAV 1204
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 134
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 135 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 194
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 195 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 244
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 10 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 69
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 70 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 127
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 128 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 165
+ +LQR +S L K+ K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 166 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 225
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 226 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 269
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ-------- 398
Query: 270 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 318
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 319 KIVEFEERRALRQPKKSK 336
+ +++++ + KK K
Sbjct: 452 IVAVYQKQKLEIKGKKQK 469
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 168/394 (42%), Gaps = 87/394 (22%)
Query: 10 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 69
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVY 167
Query: 70 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 127
R+ + + +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQ 227
Query: 128 SVGDNVVLQRIAS----------------------------------EGLSFVKRAKNSK 153
+LQR G K K +
Sbjct: 228 IFKGQSLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCE 287
Query: 154 KEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAV 207
+ + C + + +++ +++++++ PF +VI + K
Sbjct: 288 PHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK--------- 338
Query: 208 HRVLAQHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLAL 262
+++L +Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 339 NKMLKPITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ- 397
Query: 263 GVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADL 311
P++ I+K R G C E+ WE E Y ++ ++ A L
Sbjct: 398 ---------PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASL 443
Query: 312 IESACPEKIVEFE----ERRALRQPK-KSKPKSS 340
E+A P+ + ++ E + +Q K+KPK S
Sbjct: 444 FEAAYPDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 134
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 135 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 194
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 195 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 250
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 251 R 251
+
Sbjct: 988 Q 988
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis
GN=ercc5 PE=2 SV=1
Length = 1196
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 801 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 859
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 134
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 860 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 910
Query: 135 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 194
L +GL + + KE WS E ++++ N D ++++ + ++
Sbjct: 911 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLDLQQSF 960
Query: 195 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 242
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 961 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1012
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 134
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 135 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 194
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 195 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 242
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYP 978
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 3 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 62
S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD+FL
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 63 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 122
FG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP A
Sbjct: 804 FGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 123 CQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 181
+I+ GD GL K+ G + K N+ + + IN L
Sbjct: 863 LEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKIIL 912
Query: 182 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 241
E P V +AY +P DS+ + L L Q W ++T+E +L
Sbjct: 913 PSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNEVLL 967
Query: 242 PKIAERDLRRFANLRAN 258
P I + ++F ++N
Sbjct: 968 PVIQDMHKKQFVGTQSN 984
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 12 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 71
FS ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA V +D
Sbjct: 116 FSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKD 175
Query: 72 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 130
I R CY M IE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 176 IKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 235
Query: 131 DNVVLQRIASEG 142
++ VL+R+ G
Sbjct: 236 EDQVLERLQDIG 247
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 10 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 69
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVI 181
Query: 70 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 128
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 129 VGDNVVLQRIASEG 142
++ VL ++ G
Sbjct: 242 FDEDNVLAKLYEIG 255
>sp|P61942|FEN_NANEQ Flap endonuclease 1 OS=Nanoarchaeum equitans (strain Kin4-M) GN=fen
PE=3 SV=1
Length = 339
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 11/139 (7%)
Query: 6 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 65
+++G S M++EAK L ++G+P ++ E EA+ A L + + D C S D D LFG+
Sbjct: 123 KSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGS 182
Query: 66 RTVYRDIWLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYSQGV 114
V R+I + E+ YV V E+ ++E L + R LI +A+LLG+DY++ V
Sbjct: 183 PRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNEKV 242
Query: 115 RGLGPESACQIVKSVGDNV 133
G+GP++A +IVK GD +
Sbjct: 243 PGIGPKTAIEIVKRFGDPI 261
>sp|Q9VRJ0|GEN_DROME Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1
Length = 726
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 10 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 69
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 70 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 110
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>sp|Q29FC1|GEN_DROPS Flap endonuclease GEN OS=Drosophila pseudoobscura pseudoobscura
GN=Gen PE=3 SV=1
Length = 754
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 10 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 69
+ F+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VY
Sbjct: 116 TRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVY 175
Query: 70 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 110
R+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 176 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>sp|Q980U8|FEN_SULSO Flap endonuclease 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=fen PE=1 SV=2
Length = 349
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 13 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 72
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 129 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 188
Query: 73 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 120
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 189 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 248
Query: 121 SACQIVKSVG 130
A +I+K G
Sbjct: 249 RALKIIKKYG 258
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 66/110 (60%)
Query: 17 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 76
K+A+ L +LG+P + EAEAQC + E +C+G SSD D+ FG+ + R++ G
Sbjct: 140 KQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGVASSDLDVLAFGSPCLIRNLAQGG 199
Query: 77 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 126
+V ++ + ++LGF + + L +L G DY+ + G+GP++A +++
Sbjct: 200 DREIVEINLNTVLKELGFSYDEFLDLCILCGCDYANSLEGIGPKTAYKLI 249
>sp|A8AAC1|FEN_IGNH4 Flap endonuclease 1 OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=fen PE=3 SV=1
Length = 350
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M++EAK L ++GVP ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAV 194
Query: 75 GER------GYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
R V + ++I K LG R L+ +A+L+G+DY+ GV+G+GP++A
Sbjct: 195 SGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIGTDYTPGVKGVGPKTAL 254
Query: 124 QIVKSVGDNVVLQRIAS 140
+ VKS GD L+R+ +
Sbjct: 255 RYVKSYGD---LERVLT 268
>sp|Q4JAN1|FEN_SULAC Flap endonuclease 1 OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=fen
PE=3 SV=2
Length = 349
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M++E+K L ++G+P ++ E EA+ A +N L S D D LFGA+ + R+I +
Sbjct: 131 MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITI 190
Query: 75 -GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 122
G+R YV E++ + +KLG R LI +A+L+G+DY+ GV+G+G ++A
Sbjct: 191 SGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTA 250
Query: 123 CQIVK 127
+I+K
Sbjct: 251 LRIIK 255
>sp|Q976H6|FEN_SULTO Flap endonuclease 1 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=fen PE=3 SV=2
Length = 351
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 133 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTL 192
Query: 75 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 122
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 193 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 252
Query: 123 CQIVKSVG 130
+I+K G
Sbjct: 253 YRIIKKYG 260
>sp|Q9YFY5|FEN_AERPE Flap endonuclease 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=fen PE=3 SV=3
Length = 350
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 13 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 72
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 132 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 191
Query: 73 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 120
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 192 AITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 251
Query: 121 SACQIVKSVGD 131
+A ++VKS+GD
Sbjct: 252 TALRLVKSLGD 262
>sp|Q4N3S6|FEN1_THEPA Flap endonuclease 1 OS=Theileria parva GN=FEN1 PE=3 SV=1
Length = 494
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M + AK L +GVP +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGGAFLLRNVAS 198
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 127
++ ++ + L F + I +L G DY + G+GP++A +VK
Sbjct: 199 SSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>sp|Q4UFP0|FEN1_THEAN Flap endonuclease 1 OS=Theileria annulata GN=FEN1 PE=3 SV=1
Length = 506
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M AK L +G+P +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVASEDTDTLVFGGWFLLRNVTS 198
Query: 75 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 127
+V ++ + L F + + +L G DY + G+GP++A +VK
Sbjct: 199 SANKKIVKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>sp|Q0W6I0|FEN_UNCMA Flap endonuclease 1 OS=Uncultured methanogenic archaeon RC-I GN=fen
PE=3 SV=1
Length = 340
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
++ +AK L +G+P + E EAQ A + D S D D LFGA V R+I +
Sbjct: 130 IVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAI 189
Query: 75 GERGYVV-----------CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
+ V E+ ++ LG R LI +A+L+G+DY+ G+ +GP++A
Sbjct: 190 TGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYNPGIFKVGPKTAL 249
Query: 124 QIVKSVGDNV 133
++VK GDN+
Sbjct: 250 KLVKKHGDNM 259
>sp|Q8PYF6|FEN_METMA Flap endonuclease 1 OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fen PE=3
SV=1
Length = 338
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+I+++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++
Sbjct: 131 IIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAA 190
Query: 75 -------GERGYV-VCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G+ YV V EM ++E L G R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 124 QIVKSVGD 131
+++K G+
Sbjct: 251 KLIKKHGN 258
>sp|A2BMI0|FEN_HYPBU Flap endonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 /
JCM 9403) GN=fen PE=3 SV=1
Length = 350
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
M+++AK L ++GVP ++ E EAQ A + S D D LFG+ + R++ +
Sbjct: 134 MVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLVRNLAI 193
Query: 75 GERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 122
R YV E+D + + LG R L+ L +L+G+DY+ GV+G+GP++A
Sbjct: 194 TGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGIGPKTA 253
Query: 123 CQIVKSVGDNVVL 135
++VK+ D V L
Sbjct: 254 LKMVKAHRDPVKL 266
>sp|B8GIA0|FEN_METPE Flap endonuclease 1 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=fen PE=3 SV=1
Length = 333
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+I +K L +GVPC++ E EAQ A + S D D LFGA + R++ +
Sbjct: 132 IIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTV 191
Query: 75 GER----GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 125
+ G + + +D++ LG R LI +L+G+D++ G+RG+GP++A +I
Sbjct: 192 SSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKI 251
Query: 126 VKSVG 130
VK G
Sbjct: 252 VKKDG 256
>sp|A8M9L3|FEN_CALMQ Flap endonuclease 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=fen PE=3
SV=1
Length = 350
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 13 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 72
S M+ EAK L S+GVP ++ E EAQ A + + + S D D FLFGA + R++
Sbjct: 133 SDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYDSFLFGAPRLVRNL 192
Query: 73 WL-------GERGYVVC----YEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGP 119
+ G YV E++D+ + L R LI LA+LLG+DY+ +G+ G+GP
Sbjct: 193 TISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLGTDYNPEGIPGIGP 252
Query: 120 ESACQIVKSVG 130
+ A ++++ G
Sbjct: 253 QRALRLIQEYG 263
>sp|C5A639|FEN_THEGJ Flap endonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229
/ JCM 11827 / EJ3) GN=fen PE=3 SV=1
Length = 339
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 14 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 73
+I++AK L +GVP ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 TLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLT 189
Query: 74 LGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 121
+ R G V E ++++ R+LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 122 ACQIVKSVGD 131
A IVK D
Sbjct: 250 ALTIVKRSKD 259
>sp|Q97B98|FEN_THEVO Flap endonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=fen PE=3
SV=1
Length = 335
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
++ + K L +G+P ++ E EAQ + + + DG S D D LFGA+ + R+ +
Sbjct: 130 IVNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD-ADGVISQDYDCLLFGAKKILRNFAI 188
Query: 75 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G R Y Y +D++ +K G ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKAL 248
Query: 124 QIVKSVGD-NVVLQRIA 139
++K G+ VL +I
Sbjct: 249 ALIKKEGNIKAVLNKIG 265
>sp|Q5JGN0|FEN_PYRKO Flap endonuclease 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=fen PE=3 SV=1
Length = 340
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+I +AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTI 190
Query: 75 GER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 122
R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 123 CQIVKSVGD 131
IVK D
Sbjct: 251 LTIVKRTKD 259
>sp|C9ZKW4|FEN1_TRYB9 Flap endonuclease 1 OS=Trypanosoma brucei gambiense (strain
MHOM/CI/86/DAL972) GN=FEN1 PE=3 SV=1
Length = 393
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 16 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 75
++E K L +G+P ++ EAEAQCA L ++ + D D FG+R + R + G
Sbjct: 142 MEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYG 201
Query: 76 E--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 130
E + + Y +D+I GF I L +LLG DY + G+GP A + +K G
Sbjct: 202 EAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYG 258
>sp|Q57WW6|FEN1_TRYB2 Flap endonuclease 1 OS=Trypanosoma brucei brucei (strain 927/4
GUTat10.1) GN=FEN1 PE=3 SV=1
Length = 393
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 16 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 75
++E K L +G+P ++ EAEAQCA L ++ + D D FG+R + R + G
Sbjct: 142 MEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYG 201
Query: 76 E--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 130
E + + Y +D+I GF I L +LLG DY + G+GP A + +K G
Sbjct: 202 EAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYG 258
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+I+ +K L +G+P +E E EAQ A L S D D LFGA+ V R++ +
Sbjct: 131 IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAI 190
Query: 75 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 127
G + Y + + +L R LI + +L+G+D+S+G++G+G ++A ++ K
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAK 244
>sp|A3MY15|FEN_PYRCJ Flap endonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=fen PE=3 SV=1
Length = 346
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 13 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 72
S M+++AK L +G+P ++ E EAQ A + C S D D LFG+ + R++
Sbjct: 133 SEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNL 192
Query: 73 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 121
+ + V E+D + + L GR LI LA+LLG+DY+ +GV G+GP+
Sbjct: 193 AVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLGTDYNPEGVPGVGPQK 252
Query: 122 ACQIVKSVGDNVVLQRIASEGLSF 145
A +++ G L + +G+ F
Sbjct: 253 ALKLIWEFGSLEKLLQTVLKGVQF 276
>sp|Q6L2I9|FEN_PICTO Flap endonuclease 1 OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=fen PE=3 SV=1
Length = 338
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
++ E+K L +G+P ++ E EAQ + + L+ + S D D LFGA+ + R+ +
Sbjct: 131 IVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTV 190
Query: 75 GERGYV--------VCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
R + V E+ D+ L G R LI + +L G+D++ GV+G+G ++A
Sbjct: 191 YGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTGTDFNPGVKGIGAKTAL 250
Query: 124 QIVKSVGDNVVLQRIASEGL 143
++K D + +I + G+
Sbjct: 251 SLIKKYNDIYSVIKIKNIGI 270
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 14 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 73
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLT 189
Query: 74 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 121
+ G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 122 ACQIVKSVGD 131
A +IV+ D
Sbjct: 250 ALEIVRYSRD 259
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 18 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 77
EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEA 199
Query: 78 GYVVCYEMDDIERKLGFGRNS--LITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 134
+ E + GFG S I L +LLG DY G+RG+GP+ A +++ S D +
Sbjct: 200 RKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIETI 259
Query: 135 LQRIASEGLSFVKRAKNSKKEGWSFK 160
L++I R K + E W+++
Sbjct: 260 LEKI--------DRKKYTVPEDWNYQ 277
>sp|A6UX46|FEN_META3 Flap endonuclease 1 OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=fen PE=3 SV=1
Length = 326
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 26 LGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 83
+G+P ++ E EAQCA + N ++ C S D D L+GA R+I + +
Sbjct: 142 MGIPYIDAPSEGEAQCAHMIKNGDAYC--VVSQDYDALLYGAPRTVRNITASNKP-LELM 198
Query: 84 EMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEG 142
E++DI + L + LI +A+L+G+DY+ G++G+GP+ A I+K+ N ++ I E
Sbjct: 199 EIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDI--EN 256
Query: 143 LSFVKRA-KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFS 188
+K KN K ++ KE+ + N+ G L E FS
Sbjct: 257 YEEIKNIFKNPKVVDYT-----KEDIKLKSPNIEGLKEFLIEENDFS 298
>sp|Q46D63|FEN_METBF Flap endonuclease 1 OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=fen PE=3 SV=1
Length = 338
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++ +
Sbjct: 131 IVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAV 190
Query: 75 -GERGYVVCYEMDDIERK----------LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G+R + D+E + LG R LI +A+ +G+D+++G+ +GP++A
Sbjct: 191 TGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTAL 250
Query: 124 QIVKSVGD 131
+++K GD
Sbjct: 251 KLIKKHGD 258
>sp|B6YWX4|FEN_THEON Flap endonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=fen
PE=3 SV=1
Length = 341
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 1 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 60
M + R N G +I +AK L +G+P ++ E EAQ A + + S D D
Sbjct: 122 MRATRVNEG-----LINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDS 176
Query: 61 FLFGARTVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSD 109
LFGA + R++ + R G V E ++++ ++L R LI +A+L+G+D
Sbjct: 177 LLFGAPKLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTD 236
Query: 110 YSQ-GVRGLGPESACQIVKSVGD 131
Y+ G++G+GP+ A IVK D
Sbjct: 237 YNPGGIKGIGPKKALTIVKRTKD 259
>sp|O29975|FEN_ARCFU Flap endonuclease 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=fen PE=1
SV=1
Length = 336
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
++ AK L +G+P ++ E EAQ A + + + S D D LFG+ + R++ +
Sbjct: 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAI 189
Query: 75 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G+ YV V E+ +E ++LG R LI +A+L+G+DY++GV+G+G + A
Sbjct: 190 TGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKAL 249
Query: 124 QIVKSVGD 131
+K+ GD
Sbjct: 250 NYIKTYGD 257
>sp|C6A1U9|FEN_THESM Flap endonuclease 1 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fen PE=3 SV=1
Length = 340
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 14 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 73
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++
Sbjct: 130 ILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLT 189
Query: 74 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 121
+ G+R G V E ++D+ ++L R LI LA+L+G+DY+ G++GLGP+
Sbjct: 190 ITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKK 249
Query: 122 ACQIVKSVGD 131
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>sp|Q8TIY5|FEN_METAC Flap endonuclease 1 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=fen PE=3 SV=1
Length = 338
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA V R++ +
Sbjct: 131 IVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAV 190
Query: 75 -------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G+ YV E+++ R L R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 124 QIVKSVGD-NVVLQR--IASEGLSFVKR 148
+++K GD + VL+ + EGL +++
Sbjct: 251 KLIKKHGDIHAVLREKDMEIEGLDRIRK 278
>sp|Q9HJD4|FEN_THEAC Flap endonuclease 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=fen
PE=3 SV=1
Length = 336
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 15 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 74
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR + R+ +
Sbjct: 130 IVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKNV-DGVISQDYDCLLFGARKILRNFAI 188
Query: 75 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 124 QIVKSVGD-NVVLQRIA 139
++K GD VL+ I
Sbjct: 249 ALIKKEGDIKSVLKHIG 265
>sp|A8QCH0|FEN1_BRUMA Flap endonuclease 1 OS=Brugia malayi GN=FEN1 PE=3 SV=1
Length = 378
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 18 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 77
EAK L +G+P L+ EAEAQCA L S D D FG+ + R + E
Sbjct: 140 EAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEA 199
Query: 78 GYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 127
+ EM + + + G + L +LLG DY +RG+GP+ A +++K
Sbjct: 200 KKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIK 251
>sp|B3L014|FEN1_PLAKH Flap endonuclease 1 OS=Plasmodium knowlesi (strain H) GN=FEN1 PE=3
SV=1
Length = 595
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 18 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 75
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 76 -----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
+RGY++ ++ + + L N I +L G DY ++G+G ++A
Sbjct: 202 STSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 124 QIVK 127
++K
Sbjct: 262 NLIK 265
>sp|Q8ZYN2|FEN_PYRAE Flap endonuclease 1 OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=fen PE=3
SV=1
Length = 346
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 13 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 72
S M+ EAK L +GVP ++ E EAQ A + + C S D D LFG+ + R++
Sbjct: 133 SEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQDYDSLLFGSPKLVRNL 192
Query: 73 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 121
+ + + E+D + R L R LI LA+LLG+DY+ GV G+GP+
Sbjct: 193 AVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLGTDYNPDGVPGVGPQK 252
Query: 122 ACQIVKSVG 130
A +++ G
Sbjct: 253 ALKLIWEFG 261
>sp|Q75DS8|FEN1_ASHGO Flap endonuclease 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=FEN1 PE=3 SV=2
Length = 378
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 16 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 75
+ EAK L +G+P ++ EAEAQCA L + S D D + + R +
Sbjct: 136 VAEAKKLLGLMGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFS 195
Query: 76 ERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--D 131
E +E+D + + LG + L+ L ++LG DY + ++G+GP +A +++K G +
Sbjct: 196 EARKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGVGPVTALKLIKEHGSLE 255
Query: 132 NVVLQRIASEGLSFVKRAKNSKKEGWSFK 160
N+V + I+S G AK E W +K
Sbjct: 256 NIV-EFISSGG-----NAKWKVPENWPYK 278
>sp|A5KAL1|FEN1_PLAVS Flap endonuclease 1 OS=Plasmodium vivax (strain Salvador I) GN=FEN1
PE=3 SV=1
Length = 623
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 18 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 75
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 76 -----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 123
+RGY++ ++ + + L N I +L G DY ++G+G ++A
Sbjct: 202 SANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 124 QIVK 127
++K
Sbjct: 262 NLIK 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,649,679
Number of Sequences: 539616
Number of extensions: 6774767
Number of successful extensions: 20518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 20056
Number of HSP's gapped (non-prelim): 276
length of query: 477
length of database: 191,569,459
effective HSP length: 121
effective length of query: 356
effective length of database: 126,275,923
effective search space: 44954228588
effective search space used: 44954228588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)