Query 011802
Match_columns 477
No_of_seqs 308 out of 1327
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 100.0 1.2E-38 4.2E-43 327.7 10.4 197 7-249 137-346 (363)
2 3q8k_A Flap endonuclease 1; he 100.0 1.8E-37 6.2E-42 316.5 15.0 194 12-246 133-330 (341)
3 1b43_A Protein (FEN-1); nuclea 100.0 5.7E-37 1.9E-41 311.8 11.1 189 9-247 125-326 (340)
4 2izo_A FEN1, flap structure-sp 100.0 1.6E-36 5.5E-41 309.5 13.0 195 11-248 124-331 (346)
5 1a76_A Flap endonuclease-1 pro 100.0 2.5E-35 8.5E-40 298.2 15.6 189 6-248 122-313 (326)
6 1ul1_X Flap endonuclease-1; pr 100.0 1.9E-35 6.6E-40 305.1 9.1 195 11-245 132-329 (379)
7 1rxw_A Flap structure-specific 100.0 1.5E-34 5E-39 293.6 12.6 187 12-246 127-325 (336)
8 3qe9_Y Exonuclease 1; exonucle 100.0 5.6E-31 1.9E-35 269.8 10.9 130 9-140 123-259 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 99.9 1.4E-26 4.8E-31 231.7 11.5 136 10-150 97-246 (290)
10 1bgx_T TAQ DNA polymerase; DNA 99.9 4.2E-26 1.4E-30 255.7 -5.8 129 8-141 88-224 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.6 3.7E-16 1.3E-20 156.7 4.9 93 17-120 110-211 (305)
12 3lwe_A M-phase phosphoprotein 97.5 6.7E-05 2.3E-09 58.4 4.3 56 276-332 6-61 (62)
13 3mts_A Histone-lysine N-methyl 97.4 4.3E-05 1.5E-09 60.1 1.3 52 277-330 3-54 (64)
14 1ap0_A Modifier protein 1; chr 97.3 0.00012 4.2E-09 58.7 3.5 53 276-330 15-67 (73)
15 3f2u_A Chromobox protein homol 97.2 0.00024 8.1E-09 54.0 3.6 49 277-327 5-53 (55)
16 2d9u_A Chromobox protein homol 97.1 0.0005 1.7E-08 55.3 5.2 61 276-338 12-72 (74)
17 3fdt_A Chromobox protein homol 97.1 0.0003 1E-08 54.2 3.4 51 277-329 6-56 (59)
18 2kvm_A Chromobox protein homol 97.1 0.00043 1.5E-08 55.6 4.3 54 276-331 15-68 (74)
19 3i91_A Chromobox protein homol 97.1 0.0004 1.4E-08 52.5 3.6 48 277-326 6-53 (54)
20 1pfb_A Polycomb protein; chrom 97.0 0.00034 1.1E-08 53.1 3.0 48 277-326 6-53 (55)
21 3h91_A Chromobox protein homol 96.9 0.00057 1.9E-08 51.7 3.5 48 277-326 6-53 (54)
22 2dnt_A Chromodomain protein, Y 96.9 0.001 3.4E-08 54.0 4.9 59 276-336 15-74 (78)
23 1q3l_A Heterochromatin protein 96.8 0.0009 3.1E-08 53.4 4.0 50 276-327 18-67 (69)
24 1g6z_A CLR4 protein; transfera 96.8 0.0011 3.8E-08 52.6 4.2 54 276-330 10-65 (70)
25 1pdq_A Polycomb protein; methy 96.7 0.00095 3.2E-08 53.7 3.5 49 276-326 22-70 (72)
26 2k1b_A Chromobox protein homol 96.4 0.0013 4.6E-08 52.9 2.6 49 276-326 23-71 (73)
27 3g7l_A Chromo domain-containin 96.3 0.0046 1.6E-07 47.9 4.7 50 276-327 9-59 (61)
28 2dnv_A Chromobox protein homol 96.0 0.0024 8.2E-08 49.9 1.9 50 276-327 12-61 (64)
29 2rso_A Chromatin-associated pr 96.0 0.0084 2.9E-07 50.2 5.2 54 276-330 32-88 (92)
30 2rsn_A Chromo domain-containin 95.8 0.0092 3.1E-07 48.1 4.7 51 276-327 23-74 (75)
31 4hae_A CDY-like 2, chromodomai 94.8 0.0032 1.1E-07 51.6 -1.1 52 276-328 25-77 (81)
32 2y35_A LD22664P; hydrolase-DNA 94.0 0.062 2.1E-06 62.5 6.6 95 26-120 161-299 (1140)
33 2epb_A Chromodomain-helicase-D 93.3 0.065 2.2E-06 42.3 3.7 49 276-327 13-67 (68)
34 1x3p_A Cpsrp43; chromo-2 domai 92.2 0.015 5E-07 44.1 -1.4 45 277-326 3-49 (54)
35 2a1j_A DNA repair endonuclease 92.1 0.093 3.2E-06 40.6 3.0 22 112-133 7-28 (63)
36 3fqd_A Protein DHP1, 5'-3' exo 90.8 0.32 1.1E-05 55.1 6.7 93 27-119 195-349 (899)
37 3kup_A Chromobox protein homol 90.7 0.39 1.3E-05 37.6 5.3 48 277-326 15-62 (65)
38 2ee1_A Chromodomain helicase-D 90.6 0.19 6.4E-06 39.4 3.4 50 276-325 13-63 (64)
39 1x2i_A HEF helicase/nuclease; 90.1 0.24 8.2E-06 38.2 3.7 22 112-133 17-38 (75)
40 1z00_B DNA repair endonuclease 90.1 0.23 7.9E-06 40.7 3.7 21 113-133 22-42 (84)
41 1ixr_A Holliday junction DNA h 89.9 0.18 6.3E-06 47.2 3.4 32 113-144 76-107 (191)
42 2b2y_A CHD-1, chromodomain-hel 89.6 0.26 9E-06 46.1 4.1 51 276-326 132-185 (187)
43 1kft_A UVRC, excinuclease ABC 89.5 0.16 5.5E-06 40.3 2.2 22 112-133 27-48 (78)
44 2h1e_A Chromo domain protein 1 89.1 0.21 7.3E-06 46.3 3.1 50 276-325 122-176 (177)
45 1z00_A DNA excision repair pro 89.0 0.29 9.9E-06 39.7 3.5 22 112-133 22-43 (89)
46 1cuk_A RUVA protein; DNA repai 88.8 0.29 9.8E-06 46.3 3.8 32 113-144 77-108 (203)
47 2ztd_A Holliday junction ATP-d 88.4 0.17 5.7E-06 48.4 1.9 53 89-146 73-125 (212)
48 2fmm_A Chromobox protein homol 88.3 0.51 1.7E-05 37.8 4.4 49 277-327 18-66 (74)
49 2a1j_B DNA excision repair pro 87.5 0.37 1.3E-05 39.3 3.3 20 113-132 36-55 (91)
50 3pie_A 5'->3' exoribonuclease 87.5 0.36 1.2E-05 56.1 4.3 94 27-120 163-302 (1155)
51 3i3c_A Chromobox protein homol 86.6 0.71 2.4E-05 37.2 4.3 48 277-326 25-72 (75)
52 3q6s_A Chromobox protein homol 85.0 1.1 3.6E-05 36.4 4.6 49 277-327 12-60 (78)
53 2nrt_A Uvrabc system protein C 84.3 0.55 1.9E-05 45.1 3.1 22 112-133 171-192 (220)
54 3p7j_A Heterochromatin protein 81.7 1.8 6E-05 35.9 4.8 50 277-328 28-77 (87)
55 2bgw_A XPF endonuclease; hydro 74.1 1.9 6.6E-05 40.3 3.3 20 113-132 166-185 (219)
56 3c65_A Uvrabc system protein C 73.2 0.7 2.4E-05 44.5 0.0 22 112-133 176-197 (226)
57 2b2y_C CHD-1, chromodomain-hel 72.5 2.4 8.2E-05 36.9 3.2 52 279-330 47-101 (115)
58 2b2y_A CHD-1, chromodomain-hel 65.0 4.9 0.00017 37.4 3.8 50 281-330 49-101 (187)
59 4gfj_A Topoisomerase V; helix- 55.0 7.6 0.00026 41.0 3.5 21 113-133 472-492 (685)
60 2duy_A Competence protein come 53.9 5.9 0.0002 30.7 2.0 18 112-129 30-47 (75)
61 3vdp_A Recombination protein R 47.4 15 0.00052 35.0 4.0 17 112-128 29-45 (212)
62 2h1e_A Chromo domain protein 1 43.5 16 0.00054 33.6 3.4 41 288-329 45-87 (177)
63 1vdd_A Recombination protein R 43.1 19 0.00064 34.7 4.0 16 113-128 16-31 (228)
64 1ixr_A Holliday junction DNA h 42.0 12 0.00042 34.8 2.4 22 109-130 107-128 (191)
65 2ztd_A Holliday junction ATP-d 41.8 13 0.00043 35.4 2.5 21 111-131 125-145 (212)
66 2owo_A DNA ligase; protein-DNA 40.2 15 0.00052 40.5 3.2 21 113-133 516-536 (671)
67 1vq8_Y 50S ribosomal protein L 37.9 6.8 0.00023 37.9 0.0 25 112-136 18-43 (241)
68 3sgi_A DNA ligase; HET: DNA AM 37.9 6.8 0.00023 42.8 0.0 23 113-135 533-555 (615)
69 2ziu_A MUS81 protein; helix-ha 34.8 25 0.00087 34.4 3.6 29 113-141 241-270 (311)
70 1dgs_A DNA ligase; AMP complex 33.5 20 0.00069 39.5 2.8 21 113-133 511-531 (667)
71 3arc_U Photosystem II 12 kDa e 33.3 19 0.00066 30.0 2.1 17 112-128 29-45 (97)
72 1s5l_U Photosystem II 12 kDa e 33.2 21 0.00073 31.7 2.4 16 113-128 67-82 (134)
73 4glx_A DNA ligase; inhibitor, 31.8 29 0.001 37.6 3.7 21 113-133 516-536 (586)
74 2edu_A Kinesin-like protein KI 31.6 23 0.00079 28.9 2.3 18 112-129 43-60 (98)
75 1cuk_A RUVA protein; DNA repai 28.4 26 0.00088 32.8 2.3 19 111-129 110-128 (203)
76 2fmp_A DNA polymerase beta; nu 28.2 24 0.00083 35.4 2.2 17 112-128 101-117 (335)
77 2ihm_A POL MU, DNA polymerase 27.8 25 0.00085 35.7 2.2 16 113-128 106-121 (360)
78 1jms_A Terminal deoxynucleotid 27.0 26 0.00089 35.9 2.2 16 113-128 125-140 (381)
79 2bcq_A DNA polymerase lambda; 26.7 27 0.00092 35.1 2.2 22 112-133 99-121 (335)
80 2w9m_A Polymerase X; SAXS, DNA 26.7 32 0.0011 36.9 2.9 26 112-137 100-127 (578)
81 3b0x_A DNA polymerase beta fam 26.2 27 0.00091 37.4 2.2 27 113-139 97-126 (575)
82 2e62_A Protein AT5G25060; CWF2 24.6 52 0.0018 25.5 2.9 28 449-476 5-32 (61)
83 1e0b_A SWI6 protein; chromatin 23.8 88 0.003 24.4 4.2 46 278-326 14-60 (68)
84 2i5h_A Hypothetical protein AF 22.8 36 0.0012 32.3 2.1 48 92-139 110-168 (205)
85 3n0u_A Probable N-glycosylase/ 22.1 38 0.0013 32.1 2.1 18 113-130 134-151 (219)
86 3fhg_A Mjogg, N-glycosylase/DN 21.8 45 0.0015 30.9 2.6 17 112-128 120-136 (207)
87 1ufm_A COP9 complex subunit 4; 21.3 1.4E+02 0.0048 23.9 5.1 42 19-64 33-74 (84)
88 4glx_A DNA ligase; inhibitor, 20.8 49 0.0017 35.9 2.9 103 34-145 452-583 (586)
89 3fhf_A Mjogg, N-glycosylase/DN 20.3 48 0.0016 31.2 2.4 23 220-243 185-207 (214)
90 3maj_A DNA processing chain A; 20.3 71 0.0024 32.9 3.8 40 94-139 17-57 (382)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=1.2e-38 Score=327.66 Aligned_cols=197 Identities=21% Similarity=0.323 Sum_probs=167.5
Q ss_pred CCcchhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCC-------c-
Q 011802 7 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-------G- 78 (477)
Q Consensus 7 n~~~~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~-------~- 78 (477)
+....+.+|++.++++|++|||||++||||||||||+|++.|++|+|+|+|+|+|+||+++|+++++..+. .
T Consensus 137 ~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~ 216 (363)
T 3ory_A 137 MSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEY 216 (363)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCE
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccc
Confidence 34456778899999999999999999999999999999999999999999999999999999999875321 1
Q ss_pred ---eEEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCHH-HHHHHHhcChhHHHHhhhhc
Q 011802 79 ---YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSK 153 (477)
Q Consensus 79 ---~v~~y~~~~I~~~lgL~r~q~IdlaiL~GsDY~p-GVpGIG~ktA~kLIk~~gs~~-iL~~i~~~~~~~~~k~~~~~ 153 (477)
.+++|+.+.|.+++|++|+||+|+|+|+||||+| ||||||+|||++||++||+++ ++++++.
T Consensus 217 v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~------------- 283 (363)
T 3ory_A 217 VEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK------------- 283 (363)
T ss_dssp EEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC-------------
T ss_pred cccceEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc-------------
Confidence 2478999999999999999999999999999999 999999999999999999963 5544321
Q ss_pred ccCcccccCCccccccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCc
Q 011802 154 KEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 233 (477)
Q Consensus 154 k~~~~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~ 233 (477)
..+ +||..+|.++|++|.|..+ .++.|+ ..+.++|++|+.+.++|+.
T Consensus 284 -------------------------~~~--~~~~~~~~~~f~~p~v~~~-~~~~w~-----~pd~~~l~~fl~~~~~f~~ 330 (363)
T 3ory_A 284 -------------------------SPI--EVDVIAIKKYFLQPQVTDN-YRIEWH-----TPDPDAVKRILVDEHDFSI 330 (363)
T ss_dssp -------------------------CSS--CCCHHHHHHHHHSCCCCSC-CCCCCC-----CCCHHHHHHHHTTTTCCCH
T ss_pred -------------------------ccC--CCCHHHHHHHhcCCCCCCC-CCCCCC-----CCCHHHHHHHHHhccCCCH
Confidence 012 4788999999999999852 233222 2267899999999999999
Q ss_pred ccccceeehhhhHHHH
Q 011802 234 EKTDEYILPKIAERDL 249 (477)
Q Consensus 234 ~~~~e~llPll~e~~l 249 (477)
+++++.+.|+.+.+.-
T Consensus 331 ~rv~~~~~~l~~~~~~ 346 (363)
T 3ory_A 331 DRVSTALERYVKAFKE 346 (363)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999876654
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=1.8e-37 Score=316.52 Aligned_cols=194 Identities=21% Similarity=0.332 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCC--CceEEEEeHHHHH
Q 011802 12 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIE 89 (477)
Q Consensus 12 ~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~--~~~v~~y~~~~I~ 89 (477)
+..|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++...+ +..+++|+.+.|.
T Consensus 133 t~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ 212 (341)
T 3q8k_A 133 TKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRIL 212 (341)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999875432 2468899999999
Q ss_pred HHhCCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHHhcChhHHHHhhhhcccCcccccCCccccc
Q 011802 90 RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 168 (477)
Q Consensus 90 ~~lgL~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~ 168 (477)
+++|++|+||+|+|+|+||||+|||||||+|||++||++||++ ++++++++
T Consensus 213 ~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~---------------------------- 264 (341)
T 3q8k_A 213 QELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP---------------------------- 264 (341)
T ss_dssp HHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCT----------------------------
T ss_pred HHhCCCHHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHh----------------------------
Confidence 9999999999999999999999999999999999999999997 47776542
Q ss_pred cccccccCCcCCCCCCCCcHHHHHHhcCCccCCCCh-HHHHHHhhhcccChHHHHHHHHHhcCCCcccccceeehhhhH
Q 011802 169 NQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADS-EAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 246 (477)
Q Consensus 169 ~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~-e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e 246 (477)
.+..+|++||+.++.+.|++|.|..+.. ++.| .+++.++|++|+.+.++|+.+++++.+-++.+.
T Consensus 265 --------~k~~~~~~~~~~~~r~l~l~~~V~~~~~~~l~~-----~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~ 330 (341)
T 3q8k_A 265 --------NKYPVPENWLHKEAHQLFLEPEVLDPESVELKW-----SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKS 330 (341)
T ss_dssp --------TTSCCCTTCCHHHHHHHHHSCCCCCTTTSCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHH
T ss_pred --------cCCCCCcccchHHHHHHhCCCCCCCCcccccCC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0125677899999999999999975432 2222 245788999999999999998888777665533
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=5.7e-37 Score=311.78 Aligned_cols=189 Identities=22% Similarity=0.336 Sum_probs=160.7
Q ss_pred cchhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCCc----------
Q 011802 9 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG---------- 78 (477)
Q Consensus 9 ~~~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~---------- 78 (477)
...+..|++.++++|++|||||++||||||||||+|++.|++|+|+|+|+|+|+||+++|+++++..+..
T Consensus 125 ~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~ 204 (340)
T 1b43_A 125 TRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVE 204 (340)
T ss_dssp GGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccc
Confidence 3445889999999999999999999999999999999999999999999999999999999988754221
Q ss_pred -eEEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCHH-HHHHHHhcChhHHHHhhhhccc
Q 011802 79 -YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKE 155 (477)
Q Consensus 79 -~v~~y~~~~I~~~lgL~r~q~IdlaiL~GsDY~p-GVpGIG~ktA~kLIk~~gs~~-iL~~i~~~~~~~~~k~~~~~k~ 155 (477)
.+++|+.+.+.+++|++++||+|+|+|+||||+| ||||||+|||++||++||+++ ++++
T Consensus 205 ~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~------------------ 266 (340)
T 1b43_A 205 IKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK------------------ 266 (340)
T ss_dssp ECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG------------------
T ss_pred cceeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC------------------
Confidence 3468999999999999999999999999999999 999999999999999999852 3222
Q ss_pred CcccccCCccccccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCccc
Q 011802 156 GWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEK 235 (477)
Q Consensus 156 ~~~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~ 235 (477)
+++||+..+.++|++|.|... .+..| .+++.++|++|+.+.++|+.++
T Consensus 267 --------------------------~~~~~~~~~~~~~~~~~v~d~-~~~~~-----~~pd~~~l~~~~~~~~~f~~~r 314 (340)
T 1b43_A 267 --------------------------QSDVDLYAIKEFFLNPPVTDN-YNLVW-----RDPDEEGILKFLCDEHDFSEER 314 (340)
T ss_dssp --------------------------GCSSCHHHHHHHHHSCCCCCC-CCCCC-----CCCCHHHHHHHHTTTTCCCHHH
T ss_pred --------------------------CCCccHHHHHHHHhCCCCCCc-ccCCC-----CCCCHHHHHHHHHHhcCCCHHH
Confidence 235677789999999988742 12111 2447789999999999999999
Q ss_pred ccceeehhhhHH
Q 011802 236 TDEYILPKIAER 247 (477)
Q Consensus 236 ~~e~llPll~e~ 247 (477)
+++.+.|+.+.+
T Consensus 315 v~~~~~~~~~~~ 326 (340)
T 1b43_A 315 VKNGLERLKKAI 326 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999888876544
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-36 Score=309.46 Aligned_cols=195 Identities=24% Similarity=0.347 Sum_probs=156.1
Q ss_pred hhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCCc-----------e
Q 011802 11 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------Y 79 (477)
Q Consensus 11 ~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~-----------~ 79 (477)
.+..|++.++++|++|||||++||||||||||+|++.|++|+|+|+|+|+|+||+++|+++++..+.. .
T Consensus 124 vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~ 203 (346)
T 2izo_A 124 LSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIK 203 (346)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccc
Confidence 34589999999999999999999999999999999999999999999999999999999988643211 4
Q ss_pred EEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCH-HHHHHHHhcChhHHHHhhhhcccCc
Q 011802 80 VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGW 157 (477)
Q Consensus 80 v~~y~~~~I~~~lgL~r~q~IdlaiL~GsDY~p-GVpGIG~ktA~kLIk~~gs~-~iL~~i~~~~~~~~~k~~~~~k~~~ 157 (477)
+++|+.+.+.+++|++++||+|+|+|+||||+| ||||||+|||++||++||++ +++++++..
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~---------------- 267 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEIS---------------- 267 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC--------------------------
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhc----------------
Confidence 578999999999999999999999999999999 99999999999999999996 588877541
Q ss_pred ccccCCccccccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCccccc
Q 011802 158 SFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 237 (477)
Q Consensus 158 ~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~ 237 (477)
.++.+|++.++...|++|.+..+..+..| .+++..+|++|+.+.++|+.+++.
T Consensus 268 ----------------------k~~~~~~~~~l~~i~~~~~v~~~~~~l~~-----~~~d~~~l~~~~~~~~~f~~~rv~ 320 (346)
T 2izo_A 268 ----------------------KKDINFNIDEIRGLFLNPQVVKPEEALDL-----NEPNGEDIINILVYEHNFSEERVK 320 (346)
T ss_dssp -----------------------------CTTHHHHHHSCCCCCCC-CCCC-----CCCCHHHHHHHTTTTTCCCHHHHH
T ss_pred ----------------------cCCCCccHHHHHHHhhCCCCCCccccCcc-----CCCCHHHHHHHHHHhcCCCHHHHH
Confidence 02334556899999999998754322211 245778999999999999999999
Q ss_pred ceeehhhhHHH
Q 011802 238 EYILPKIAERD 248 (477)
Q Consensus 238 e~llPll~e~~ 248 (477)
..+-++.+.+.
T Consensus 321 ~~~~~l~~~~~ 331 (346)
T 2izo_A 321 NGIERLTKAIK 331 (346)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 98888876554
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.5e-35 Score=298.15 Aligned_cols=189 Identities=21% Similarity=0.326 Sum_probs=160.7
Q ss_pred cCCcchhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCCceEEEEeH
Q 011802 6 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 85 (477)
Q Consensus 6 Rn~~~~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~~v~~y~~ 85 (477)
|+....+..|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|++++...+ ..+++|+.
T Consensus 122 ~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~-~~~~~~~~ 200 (326)
T 1a76_A 122 KRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK-EMPELIEL 200 (326)
T ss_dssp GGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS-SCCEEEEH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC-CceEEEEH
Confidence 33445567799999999999999999999999999999999999999999999999999999999887643 57899999
Q ss_pred HHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCH-HHH-HHHHhcChhHHHHhhhhcccCcccccC
Q 011802 86 DDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDN-VVL-QRIASEGLSFVKRAKNSKKEGWSFKCN 162 (477)
Q Consensus 86 ~~I~~~lgL~r~q~IdlaiL~GsDY~p-GVpGIG~ktA~kLIk~~gs~-~iL-~~i~~~~~~~~~k~~~~~k~~~~~~c~ 162 (477)
+.+.+++|++++||+|+|+|+||||+| ||||||+|||++||++ |++ +++ ++++.
T Consensus 201 ~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~---------------------- 257 (326)
T 1a76_A 201 NEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY---------------------- 257 (326)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------------------
Confidence 999999999999999999999999999 9999999999999999 996 466 65431
Q ss_pred CccccccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccceeeh
Q 011802 163 NKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 242 (477)
Q Consensus 163 ~~~~~~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP 242 (477)
...+.++|++|.+.. +.+.. ..+++.++|++|+.+.++|+.+++++.+.|
T Consensus 258 ------------------------~~~~~~~~l~~~l~~-~~~~~-----~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~ 307 (326)
T 1a76_A 258 ------------------------YDEIKRIFKEPKVTD-NYSLS-----LKLPDKEGIIKFLVDENDFNYDRVKKHVDK 307 (326)
T ss_dssp ------------------------HHHHHHHHHSCCCCC-CCCCC-----CCCCCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHhCCCCCC-CccCC-----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 134557888888765 32211 124477899999999999999999999988
Q ss_pred hhhHHH
Q 011802 243 KIAERD 248 (477)
Q Consensus 243 ll~e~~ 248 (477)
+.+.+.
T Consensus 308 ~~~~~~ 313 (326)
T 1a76_A 308 LYNLIA 313 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876544
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.9e-35 Score=305.09 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCC--CceEEEEeHHHH
Q 011802 11 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDI 88 (477)
Q Consensus 11 ~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~--~~~v~~y~~~~I 88 (477)
.+..|++.++++|++|||||++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++...+ ...+++|+.+.|
T Consensus 132 vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v 211 (379)
T 1ul1_X 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (379)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHH
Confidence 347889999999999999999999999999999999999999999999999999999999876432 245889999999
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHHhcChhHHHHhhhhcccCcccccCCcccc
Q 011802 89 ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEES 167 (477)
Q Consensus 89 ~~~lgL~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~~~~~~~~~k~~~~~k~~~~~~c~~~~~~ 167 (477)
.+++||+++||+|+|+|+||||++||||||+|||++||++||++ +++++++..
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~-------------------------- 265 (379)
T 1ul1_X 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN-------------------------- 265 (379)
T ss_dssp HHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCT--------------------------
T ss_pred HHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhh--------------------------
Confidence 99999999999999999999999999999999999999999996 466654320
Q ss_pred ccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccceeehhhh
Q 011802 168 LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIA 245 (477)
Q Consensus 168 ~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~ 245 (477)
+..+|.+|++..+.+.|++|.|..+.. + . +...+++..+|++|+.+.++|+.+++++.+-++.+
T Consensus 266 ----------k~~~~~~~~~~~ar~l~l~~~v~~~~~--~-~-l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~ 329 (379)
T 1ul1_X 266 ----------KYPVPENWLHKEAHQLFLEPEVLDPES--V-E-LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSK 329 (379)
T ss_dssp ----------TSCCCSSCCHHHHHHHHHSCCCCCGGG--C-C-CCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred ----------cccCCCcCCHHHHHHHhcCCeeCCCCC--c-c-CCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 124567888889999999999975321 1 1 11123467899999999999999888777665543
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.5e-34 Score=293.60 Aligned_cols=187 Identities=22% Similarity=0.346 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCCc-----------eE
Q 011802 12 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YV 80 (477)
Q Consensus 12 ~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~-----------~v 80 (477)
+..|++.++++|++|||||++||||||||||+|++.|++++|+|+|+|+|+||+++|++++...+.. .+
T Consensus 127 t~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~ 206 (336)
T 1rxw_A 127 DEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKP 206 (336)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccce
Confidence 3449999999999999999999999999999999999999999999999999999999987654211 45
Q ss_pred EEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHHhcChhHHHHhhhhcccCccc
Q 011802 81 VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSF 159 (477)
Q Consensus 81 ~~y~~~~I~~~lgL~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~~~~~~~~~k~~~~~k~~~~~ 159 (477)
++|+.+.+.+++|++|+||+|+|+|+||||+|||||||+|||++||++||++ +++++++. +|
T Consensus 207 ~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~---~l-------------- 269 (336)
T 1rxw_A 207 EIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV---NI-------------- 269 (336)
T ss_dssp EEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC-------------------
T ss_pred EEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCCC---CC--------------
Confidence 7899999999999999999999999999999999999999999999999997 48887642 00
Q ss_pred ccCCccccccccccccCCcCCCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccce
Q 011802 160 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEY 239 (477)
Q Consensus 160 ~c~~~~~~~~~e~~~~~~~~~ip~~FP~~~Vi~~Yl~P~vs~~d~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~ 239 (477)
+ + ..++...|++|.+.. ..+..| .+++..+|++|+.+.++|+..++...
T Consensus 270 ----------------------~-~--~~~l~~i~~~~~v~~-~~~~~~-----~~~d~~~l~~~~~~~~~f~~~rv~~~ 318 (336)
T 1rxw_A 270 ----------------------D-H--VEEIRNFFLNPPVTD-DYRIEF-----REPDFEKAIEFLCEEHDFSRERVEKA 318 (336)
T ss_dssp ---------------------------CHHHHHHHHSCCCCC-CCCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHH
T ss_pred ----------------------c-c--HHHHHHHHhCCCCCC-cccccC-----CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 0 0 127888899988873 222211 24577899999999999999888777
Q ss_pred eehhhhH
Q 011802 240 ILPKIAE 246 (477)
Q Consensus 240 llPll~e 246 (477)
|-++.+.
T Consensus 319 ~~~l~~~ 325 (336)
T 1rxw_A 319 LEKLKAL 325 (336)
T ss_dssp HGGGCC-
T ss_pred HHHHHhh
Confidence 7666543
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.97 E-value=5.6e-31 Score=269.78 Aligned_cols=130 Identities=26% Similarity=0.394 Sum_probs=115.4
Q ss_pred cchhHHHHHHHHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeecccEEEEeccCCCCceEEEEeHHHH
Q 011802 9 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDI 88 (477)
Q Consensus 9 ~~~~~~~i~~ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~~v~~y~~~~I 88 (477)
...+..|++.++++|++|||||++||||||||||+|++.|++|+|+|+|+|+|+||+++|++++...+ .. ..|+.+.+
T Consensus 123 ~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~-~~-~~~~~~~~ 200 (352)
T 3qe9_Y 123 INITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFG-NG-LEIDQARL 200 (352)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTS-EE-EEEEGGGG
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCC-Cc-EEEeHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999998876432 33 34777775
Q ss_pred --HHHhC--CCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHh--CCH-HHHHHHHh
Q 011802 89 --ERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV--GDN-VVLQRIAS 140 (477)
Q Consensus 89 --~~~lg--L~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~--gs~-~iL~~i~~ 140 (477)
.+++| ++++||+|+|+|+||||+|||||||+|||++||++| |++ ++|+++++
T Consensus 201 ~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~ 259 (352)
T 3qe9_Y 201 GMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259 (352)
T ss_dssp TTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 57889 999999999999999999999999999999999999 565 58887764
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.93 E-value=1.4e-26 Score=231.71 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=118.8
Q ss_pred chhHHH-HHHHHHHHHH--cCCCEEeccc-hHHHHHHHHHHC----CCeeEEecCCCcEEeecccEE-EEeccCCCCceE
Q 011802 10 SEFSCM-IKEAKALGLS--LGVPCLEGVE-EAEAQCALLNLE----SLCDGCFSSDSDIFLFGARTV-YRDIWLGERGYV 80 (477)
Q Consensus 10 ~~~~~~-i~~ik~LL~~--~GIp~i~APg-EAEAqcA~L~~~----G~VD~ViS~DsD~llFG~~~V-irn~~~~~~~~v 80 (477)
+.+..| ++.++++|++ ||||++.+|| ||||+||+|++. |....|+|+|+|++||++++| +++.. .+
T Consensus 97 e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~-----~~ 171 (290)
T 1exn_A 97 KALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT-----TR 171 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT-----TT
T ss_pred hhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEECC-----CC
Confidence 677788 9999999999 9999999997 999999999875 878889999999999998765 34321 45
Q ss_pred EEEeHHHHHHHhCCCH-HHHHHHHHHhC--CCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHHhc-ChhHHHHhh
Q 011802 81 VCYEMDDIERKLGFGR-NSLITLALLLG--SDYSQGVRGLGPESACQIVKSVGDN-VVLQRIASE-GLSFVKRAK 150 (477)
Q Consensus 81 ~~y~~~~I~~~lgL~r-~q~IdlaiL~G--sDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~~~-~~~~~~k~~ 150 (477)
++|+.+.+.+++|++| +||+|+++|+| |||+|||||||+|||.+||++||++ ++|+++++. ...+.+++.
T Consensus 172 ~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~~L~ 246 (290)
T 1exn_A 172 REYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLN 246 (290)
T ss_dssp EEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHHHHH
T ss_pred EEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHHHHH
Confidence 7899999999999999 99999999999 9999999999999999999999997 599998875 334444443
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.90 E-value=4.2e-26 Score=255.70 Aligned_cols=129 Identities=21% Similarity=0.203 Sum_probs=118.0
Q ss_pred CcchhHHHHHHHHHHHHHcCCCEEeccc-hHHHHHHHHHH----CCCeeEEecCCCcEEeecccEEEEeccCCCCceEEE
Q 011802 8 MGSEFSCMIKEAKALGLSLGVPCLEGVE-EAEAQCALLNL----ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 82 (477)
Q Consensus 8 ~~~~~~~~i~~ik~LL~~~GIp~i~APg-EAEAqcA~L~~----~G~VD~ViS~DsD~llFG~~~Virn~~~~~~~~v~~ 82 (477)
+++.+..|++.++++|++||||++++|| ||||+||+|++ .|..++|+|+|+|+++|++++|++... . + ++
T Consensus 88 ~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~-~-g---~~ 162 (832)
T 1bgx_T 88 TPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP-E-G---YL 162 (832)
T ss_dssp CCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS-S-S---CC
T ss_pred ChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC-C-C---cE
Confidence 5678889999999999999999999997 99999999987 689999999999999999998877654 2 2 57
Q ss_pred EeHHHHHHHhCCCHHHHHHHHHHhC--CCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHHhc
Q 011802 83 YEMDDIERKLGFGRNSLITLALLLG--SDYSQGVRGLGPESACQIVKSVGDN-VVLQRIASE 141 (477)
Q Consensus 83 y~~~~I~~~lgL~r~q~IdlaiL~G--sDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~~~ 141 (477)
|+.+.|.+++|++|+||+|+|+|+| |||+|||||||+|||++||++||++ ++++++++.
T Consensus 163 ~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~ 224 (832)
T 1bgx_T 163 ITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRL 224 (832)
T ss_dssp BCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCC
T ss_pred EcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHh
Confidence 8999999999999999999999999 9999999999999999999999996 588887754
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.59 E-value=3.7e-16 Score=156.70 Aligned_cols=93 Identities=19% Similarity=0.038 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCEEeccc-hHHHHHHHHHH----CCCeeEEecCCCcEEeecc-cEE-EEeccCCCCceEEEEeHHHHH
Q 011802 17 KEAKALGLSLGVPCLEGVE-EAEAQCALLNL----ESLCDGCFSSDSDIFLFGA-RTV-YRDIWLGERGYVVCYEMDDIE 89 (477)
Q Consensus 17 ~~ik~LL~~~GIp~i~APg-EAEAqcA~L~~----~G~VD~ViS~DsD~llFG~-~~V-irn~~~~~~~~v~~y~~~~I~ 89 (477)
+.++++|++||||++..|| ||||.||+|++ .|.-..|+|.|+|++|+.. +.| +.+.. +.+.|.
T Consensus 110 p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~~~~~~----------~~~~V~ 179 (305)
T 3h7i_A 110 KVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVKQWSPM----------HKKWVK 179 (305)
T ss_dssp HHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEEEEETT----------TTEEEC
T ss_pred HHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeEEEecC----------CHHHHH
Confidence 7899999999999999997 99999999875 5777799999999999976 332 22222 123466
Q ss_pred HHhCCCHHHHHHHHHHhC--CCCCCCCCCCcHH
Q 011802 90 RKLGFGRNSLITLALLLG--SDYSQGVRGLGPE 120 (477)
Q Consensus 90 ~~lgL~r~q~IdlaiL~G--sDY~pGVpGIG~k 120 (477)
+++|+ |+|++|+++|+| +|++|||||||+.
T Consensus 180 ek~Gv-P~q~iD~~aL~GDsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 180 IKSGS-AEIDCMTKILKGDKKDNVASVKVRSDF 211 (305)
T ss_dssp SSCSC-HHHHHHHHHHHCBGGGTBCCTTSCTTH
T ss_pred HHhCC-HHHHhhHHheeCccccCCCCCCcCCcc
Confidence 78998 999999999999 8999999999986
No 12
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.54 E-value=6.7e-05 Score=58.42 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=50.1
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhccCC
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQP 332 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~~~ 332 (477)
.|.+|+..|..+|..-|-|.|.|.+.-..||+|++-+. .||++|.+|+++.++.++
T Consensus 6 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~~~k~ 61 (62)
T 3lwe_A 6 EVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE-DCKEVLLEFRKKIAENKA 61 (62)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT-TCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh-ccHHHHHHHHHhhHhhcC
Confidence 35699999999999999999999988889999999984 799999999999988744
No 13
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=97.37 E-value=4.3e-05 Score=60.09 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=47.0
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhcc
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 330 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~ 330 (477)
|.+|+..|..+|..-|-|.|.+.+.-..+|+|++-+. ||++|.+|+++...+
T Consensus 3 VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~~~~ 54 (64)
T 3mts_A 3 VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDLERE 54 (64)
T ss_dssp EEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHHHHH
Confidence 4589999999999999999999888888999999994 999999999887765
No 14
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.33 E-value=0.00012 Score=58.74 Aligned_cols=53 Identities=19% Similarity=0.438 Sum_probs=47.8
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhcc
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 330 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~ 330 (477)
.|-+|+..|..+|..-|.|.|.|.+.-..||+|++-+ .||++|.+|+++....
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~~~ 67 (73)
T 1ap0_A 15 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTA 67 (73)
T ss_dssp EEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTTSS
T ss_pred EEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhhcc
Confidence 4679999999999999999999998888999999998 4999999999877665
No 15
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=97.19 E-value=0.00024 Score=53.97 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=43.6
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
|.+|+..|..+|..-|.|.|.+.+.-..||+|++-+ .||++|.+|+++.
T Consensus 5 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~q 53 (55)
T 3f2u_A 5 VEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQ 53 (55)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC--
T ss_pred EEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHHc
Confidence 568999999999999999999999888999999999 5999999998754
No 16
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0005 Score=55.35 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=53.6
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhccCCCCcCCC
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKPK 338 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~~~ 338 (477)
.|.+|+..|..+|..-|.|.|.+.+.-..||+|++-+. +|++|.+|+++.+.+...+.++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--~~~li~~f~~~~~~k~~~~~~p~ 72 (74)
T 2d9u_A 12 AAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKKEHEKEVQNSGPS 72 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCC--CHHHHHHHHHHHHHHCCSSCCCC
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCC--CHHHHHHHHHhhhhhHHhhcCCC
Confidence 46799999999999999999999998889999999876 48999999999998877776654
No 17
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.0003 Score=54.17 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=43.5
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhc
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL 329 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~ 329 (477)
|.+|+..|..+|..-|-|.|.+.+.-..||+|++-+ .||++|.+|+++..+
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~k~ 56 (59)
T 3fdt_A 6 VEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYKK 56 (59)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC----
T ss_pred EEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhhhh
Confidence 468999999999999999999999888999999999 599999999877644
No 18
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.08 E-value=0.00043 Score=55.64 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=48.2
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhccC
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQ 331 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~~ 331 (477)
.|-+|+..|..+|..-|.|.|.+.+.-..||+|++-+. +|++|.+|+++.+.+.
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~--~~~li~~f~~~~~~~~ 68 (74)
T 2kvm_A 15 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEKEERDR 68 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS--CHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC--CHHHHHHHHHHhhhhh
Confidence 46799999999999999999999988889999999876 6899999999877663
No 19
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=97.05 E-value=0.0004 Score=52.45 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=43.8
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
|-+|+..|..+|..-|.|.|.|.+.-..||+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~R 53 (54)
T 3i91_A 6 AEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL--DARLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--CHHHHHHHHHC
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC--CHHHHHHHHhc
Confidence 4689999999999999999999998889999999887 69999999874
No 20
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.03 E-value=0.00034 Score=53.07 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=43.1
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
|-+|+.+|..+|..-|.|.|.|.+.-..||+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~--~~~li~~f~~~ 53 (55)
T 1pfb_A 6 AEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHHTS
T ss_pred EEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC--CHHHHHHHHHh
Confidence 4689999999999999999999988889999999876 69999999764
No 21
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=96.92 E-value=0.00057 Score=51.66 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=43.0
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
|-+|+..|..+|..-|.|.|.|.+.-..||+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~r 53 (54)
T 3h91_A 6 AECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--SHHHHHHHHC-
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC--CHHHHHHHHhc
Confidence 4689999999999999999999988888999999886 69999999875
No 22
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=96.88 E-value=0.001 Score=54.02 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=49.5
Q ss_pred Ccceeeeccc-cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhccCCCCcC
Q 011802 276 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSK 336 (477)
Q Consensus 276 ~~~~I~K~R~-~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~ 336 (477)
.|.+|+..|. .+|..-|.|.|.+.+.-..||+|++-+. .||++|.+|+++.+.+ +|+..
T Consensus 15 ~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~-~~~~li~~f~~~~~~k-~k~~~ 74 (78)
T 2dnt_A 15 EVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV-NCEEYIHDFNRRHTEK-QKESG 74 (78)
T ss_dssp CCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT-TCHHHHHHHHHHHSCS-CSCCC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH-hHHHHHHHHHhhhhcc-ccccC
Confidence 4679999997 6898999999999998899999999875 5899999999988765 34444
No 23
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=96.82 E-value=0.0009 Score=53.40 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=45.3
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
.|-+|+..|..+|..-|.|.|.|.+.-..||+|++-+ .||++|.+|++++
T Consensus 18 ~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 18 AVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEASR 67 (69)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHHC
T ss_pred EEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHHc
Confidence 4679999999999999999999998888999999998 4999999998864
No 24
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=96.77 E-value=0.0011 Score=52.65 Aligned_cols=54 Identities=13% Similarity=0.353 Sum_probs=47.4
Q ss_pred CcceeeeccccC-Ccee-eEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHhcc
Q 011802 276 PITGIIKSRKLQ-GKEC-FEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 330 (477)
Q Consensus 276 ~~~~I~K~R~~~-gv~c-yev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~ 330 (477)
.|-+|+..|..+ |..- |.|.|.|.+.-..||+|++-+. .||++|.+|+++.++.
T Consensus 10 ~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~~~~ 65 (70)
T 1g6z_A 10 EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRKRRL 65 (70)
T ss_dssp CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHHTTT
T ss_pred EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhcccc
Confidence 356899999888 8888 9999999888889999999886 8999999999987654
No 25
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.72 E-value=0.00095 Score=53.70 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=42.9
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
.|-+|+.+|..+|..-|.|.|.|.+.-..||+|++-+. ||++|.+|+++
T Consensus 22 eVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~--~~~lI~~F~~~ 70 (72)
T 1pdq_A 22 AAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 70 (72)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHC--
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC--CHHHHHHHHHh
Confidence 46799999999999999999999888889999999875 79999999765
No 26
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=96.44 E-value=0.0013 Score=52.93 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=44.2
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
.|-+|+..|..+|..-|.|.|.|.+.-..||+|++-+. ||++|.+|+++
T Consensus 23 eVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~--~~~li~~F~~~ 71 (73)
T 2k1b_A 23 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEK 71 (73)
T ss_dssp CCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS--CHHHHHHHHTS
T ss_pred EEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC--CHHHHHHHHHh
Confidence 46799999999999999999999988889999999876 69999999864
No 27
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=96.28 E-value=0.0046 Score=47.86 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=43.7
Q ss_pred CcceeeeccccCCce-eeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 276 PITGIIKSRKLQGKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~-cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
.|-+|+..|..+|.. -|-|.|.|.+.-..||+|++-+ .||++|.+|..++
T Consensus 9 ~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~~~~~r 59 (61)
T 3g7l_A 9 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL--FGAEKVLKKWKKR 59 (61)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG--TBCHHHHHHHHHC
T ss_pred EEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC--CCHHHHHHHHHHh
Confidence 356899999998887 9999999999888999999998 4999999987764
No 28
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=95.99 E-value=0.0024 Score=49.88 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred CcceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 276 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 276 ~~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
.|-+|+..|..+|..-|.|.|.+.+.-..||+|++-+. +|++|.+|+++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~--~~~li~~f~~~~ 61 (64)
T 2dnv_A 12 AAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL--DARLLAAFESGP 61 (64)
T ss_dssp CCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCC--CHHHHHHHHCCT
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCC--CHHHHHHHHHHc
Confidence 45799999999999999999999988889999999876 479999998643
No 29
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=95.96 E-value=0.0084 Score=50.20 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=45.6
Q ss_pred Ccceeeeccc--cCCceeeEEEecccCc-ceeeeeehhhhhhhcchhHHHHHHHHhcc
Q 011802 276 PITGIIKSRK--LQGKECFEVSWEESYG-LKSSVVPADLIESACPEKIVEFEERRALR 330 (477)
Q Consensus 276 ~~~~I~K~R~--~~gv~cyev~w~~~~~-l~~s~vP~~lv~~a~Pe~v~~f~~~~~~~ 330 (477)
.|-+|+..|. ++|..-|-|.|.|.+. -..||+|++=+. -||++|.+|+++.+.+
T Consensus 32 ~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~-~c~~li~~f~~~~~~k 88 (92)
T 2rso_A 32 VVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS-GCKQLIEAYWNEHGGR 88 (92)
T ss_dssp CEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG-TSHHHHHHHHHHHTCC
T ss_pred EEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh-hHHHHHHHHHHHcCCC
Confidence 5689999996 5799999999999874 567899998874 5999999999988653
No 30
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=95.83 E-value=0.0092 Score=48.15 Aligned_cols=51 Identities=12% Similarity=0.278 Sum_probs=44.1
Q ss_pred Ccceeeeccc-cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 276 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 276 ~~~~I~K~R~-~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
.|.+|+..|. .+|..-|-|.|.|.+.-..||+|++=+. .|+++|.+|++++
T Consensus 23 eVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~ 74 (75)
T 2rsn_A 23 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWKKRK 74 (75)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT-TTHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc-ChHHHHHHHHHhh
Confidence 4679999996 4689999999999988888999999775 4899999999864
No 31
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=94.83 E-value=0.0032 Score=51.61 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=44.1
Q ss_pred Ccceeeeccc-cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHh
Q 011802 276 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 328 (477)
Q Consensus 276 ~~~~I~K~R~-~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~ 328 (477)
.|.+|+..|. .+|..-|-|.|.|.+.-..||+|++=+. .||++|.+|+++.+
T Consensus 25 eVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~ 77 (81)
T 4hae_A 25 EVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL-HCEEFIDEFNGLHM 77 (81)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE-ECCCCCCTTCSSCC
T ss_pred EEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh-hhHHHHHHHHHHcc
Confidence 4679999886 5788899999999988888999998775 59999999976543
No 32
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=93.98 E-value=0.062 Score=62.55 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=63.7
Q ss_pred cCCCEEec----cchHHHHHHHHHH---------CCCeeEEecCCCcEEeecc----c--EEEEecc-CCC--------C
Q 011802 26 LGVPCLEG----VEEAEAQCALLNL---------ESLCDGCFSSDSDIFLFGA----R--TVYRDIW-LGE--------R 77 (477)
Q Consensus 26 ~GIp~i~A----PgEAEAqcA~L~~---------~G~VD~ViS~DsD~llFG~----~--~Virn~~-~~~--------~ 77 (477)
-++.+|.+ |||+|.-+-...+ -+...+|++.|.|++++|= + .++|... .+. .
T Consensus 161 ~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~ 240 (1140)
T 2y35_A 161 QRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEE 240 (1140)
T ss_dssp SSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGG
T ss_pred cceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccc
Confidence 35777764 7999986543322 1457899999999999862 2 4677532 111 1
Q ss_pred ceEEEEeHHHHHHH----h--------CCC----HHHHHHHHHHhCCCCCCCCCCCcHH
Q 011802 78 GYVVCYEMDDIERK----L--------GFG----RNSLITLALLLGSDYSQGVRGLGPE 120 (477)
Q Consensus 78 ~~v~~y~~~~I~~~----l--------gL~----r~q~IdlaiL~GsDY~pGVpGIG~k 120 (477)
..+.+++..-+.+. + .++ .+.||.+|.|+|.||+|++|++.+.
T Consensus 241 ~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 241 TRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp CEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred cceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 35667777655442 2 123 3678889999999999999998744
No 33
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.30 E-value=0.065 Score=42.30 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred Ccceeeecccc----CC--ceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 276 PITGIIKSRKL----QG--KECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 276 ~~~~I~K~R~~----~g--v~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
.|.+|+..|.+ +| ..=|-|.|.+.+--..||+|++-+ .|++|.+|++..
T Consensus 13 ~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~r~ 67 (68)
T 2epb_A 13 EVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFESLQ 67 (68)
T ss_dssp CCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHHHC
T ss_pred EEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc---CHHHHHHHHHhh
Confidence 46799998853 47 778999999999889999999887 589999999753
No 34
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=92.24 E-value=0.015 Score=44.11 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=38.3
Q ss_pred cceeeeccccC-Cce-eeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQ-GKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~-gv~-cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
|-+|+..|..+ |.. -|-|.|.|.+ ..||+|++=+. |++|.+|+++
T Consensus 3 VE~Ild~r~~~~g~~~~YlVKWkgy~--~~TWEp~~nL~---~~li~~f~~~ 49 (54)
T 1x3p_A 3 AESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD---STLVLLYQQQ 49 (54)
T ss_dssp SSCCCCBSSCSSSCCCCBCCCCSSSS--SCSCSTTCCSS---SSSHHHHTSS
T ss_pred EEEEEEEEEcCCCcEEEEEEEECCCC--cCCccchHHCC---HHHHHHHHHH
Confidence 45889999887 887 8999999973 57899999875 9999999753
No 35
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.09 E-value=0.093 Score=40.57 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=20.2
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
..|||||++++..|++.||+..
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~ 28 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIA 28 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHH
Confidence 4799999999999999999974
No 36
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=90.76 E-value=0.32 Score=55.08 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCCEEec----cchHHHHHHHHHHC---------CCeeEEecCCCcEEeecc------cEEEEecc-CCC----------
Q 011802 27 GVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGA------RTVYRDIW-LGE---------- 76 (477)
Q Consensus 27 GIp~i~A----PgEAEAqcA~L~~~---------G~VD~ViS~DsD~llFG~------~~Virn~~-~~~---------- 76 (477)
++.+|.+ |||.|.-|-...+. ....+|++.|.|++++|= -.|+|.-. ...
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 5667764 89999876644331 357899999999999972 24777421 100
Q ss_pred -----------------CceEEEEeHHHHHH----HhCCC-----------HHHHHHHHHHhCCCCCCCCCCCcH
Q 011802 77 -----------------RGYVVCYEMDDIER----KLGFG-----------RNSLITLALLLGSDYSQGVRGLGP 119 (477)
Q Consensus 77 -----------------~~~v~~y~~~~I~~----~lgL~-----------r~q~IdlaiL~GsDY~pGVpGIG~ 119 (477)
...+.+++..-+.+ ++.+. -+.||.+|.|+|.||+|.+|.+-+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 02356777755544 33321 158899999999999999997753
No 37
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=90.65 E-value=0.39 Score=37.56 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=42.3
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
+.+|+..+..+|--.|=|.|.+.+. ..+||+..+...||.+|-+|-++
T Consensus 15 ~ekI~g~~~~~Gel~fLvKWKg~~~--~d~Vpa~e~n~~~PqlVI~fYE~ 62 (65)
T 3kup_A 15 PERIIGATDSSGELMFLMKWKDSDE--ADLVLAKEANMKCPQIVIAFYEE 62 (65)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHH
T ss_pred eeEEeeEEcCCCcEEEEEEECCCCh--hheEEHHHHHhhChHHHHHHHHH
Confidence 3588888899999999999999885 44899999999999999999665
No 38
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=90.59 E-value=0.19 Score=39.43 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=42.4
Q ss_pred Ccceeeeccc-cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHH
Q 011802 276 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 325 (477)
Q Consensus 276 ~~~~I~K~R~-~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~ 325 (477)
.|.+|+..|. .+|..-|-|.|.+.+-=..||+|+++....+++.|.+|.+
T Consensus 13 ~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 13 MIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 4679999997 5799999999999999899999999765666666999975
No 39
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=90.07 E-value=0.24 Score=38.22 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
.||||||+++|..|+..||+..
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~ 38 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVE 38 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHH
T ss_pred cCCCCCCHHHHHHHHHHcCCHH
Confidence 4899999999999999999963
No 40
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=90.07 E-value=0.23 Score=40.74 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=19.9
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 011802 113 GVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~ 133 (477)
.|||||++++..|++.||++.
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~ 42 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIA 42 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHH
T ss_pred hCCCCCHHHHHHHHHHcCCHH
Confidence 799999999999999999974
No 41
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=89.93 E-value=0.18 Score=47.25 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhcChh
Q 011802 113 GVRGLGPESACQIVKSVGDNVVLQRIASEGLS 144 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~iL~~i~~~~~~ 144 (477)
+|+|||||+|..|+..|++..+.+.+.+...+
T Consensus 76 ~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~ 107 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPPRLLARALLEGDAR 107 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcCHHHHHHHHHhCChHHHHHHHHhCCHH
Confidence 49999999999999999998887777665443
No 42
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=89.56 E-value=0.26 Score=46.06 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=45.1
Q ss_pred Ccceeeeccc---cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 276 PITGIIKSRK---LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 276 ~~~~I~K~R~---~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
.|.+|+..|. ..|..-|-|.|.+.+-=..||+|++.+...||++|.+|+++
T Consensus 132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 132 IVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 3568998887 68999999999999877899999999988999999999875
No 43
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=89.48 E-value=0.16 Score=40.27 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.1
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
.+|||||+++|.+|++.||+.+
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~ 48 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQ 48 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHH
T ss_pred hcCCCCCHHHHHHHHHHcCCHH
Confidence 4999999999999999999963
No 44
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=89.10 E-value=0.21 Score=46.28 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=44.5
Q ss_pred Ccceeeeccc-----cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHH
Q 011802 276 PITGIIKSRK-----LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 325 (477)
Q Consensus 276 ~~~~I~K~R~-----~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~ 325 (477)
.|.+|+..|. ..|..-|-|.|.+.+--..||+|++.+...||++|.+|++
T Consensus 122 ~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 122 VPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred eeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHh
Confidence 3578999995 6899999999999988889999999998889999999975
No 45
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=88.96 E-value=0.29 Score=39.66 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=20.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
.+|||||+++|.+|++.||+..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~ 43 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLE 43 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHH
Confidence 4899999999999999999863
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=88.81 E-value=0.29 Score=46.32 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.1
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhcChh
Q 011802 113 GVRGLGPESACQIVKSVGDNVVLQRIASEGLS 144 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~iL~~i~~~~~~ 144 (477)
+|+|||||+|..|+..|++..+.+.+.+...+
T Consensus 77 ~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~ 108 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSAQQFVNAVEREEVG 108 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcCHHHHHHHHhhCChHHHHHHHHhCCHH
Confidence 39999999999999999998887777765444
No 47
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=88.37 E-value=0.17 Score=48.38 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=35.5
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHhcChhHH
Q 011802 89 ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 146 (477)
Q Consensus 89 ~~~lgL~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~gs~~iL~~i~~~~~~~~ 146 (477)
...||+....-.++-.++.+ |+|||||+|..++..|+...+.+.+.+...+..
T Consensus 73 ~~LyGF~~~~Er~lf~~L~s-----v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L 125 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLS-----VSGVGPRLAMAALAVHDAPALRQVLADGNVAAL 125 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHT-----STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred cceEecCcHHHHHHHHHhcC-----cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHH
Confidence 34677754444444333332 999999999999999999877666655544433
No 48
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=88.31 E-value=0.51 Score=37.83 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=43.6
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
+.+|+..+..+|--.|=|.|.+.+. .++||+..+...||.+|-+|-+..
T Consensus 18 ~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~ 66 (74)
T 2fmm_A 18 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 66 (74)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred ceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence 4689999999999999999999886 679999999999999999997753
No 49
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.51 E-value=0.37 Score=39.29 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=19.0
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 011802 113 GVRGLGPESACQIVKSVGDN 132 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~ 132 (477)
+|||||+++|.+|++.||+.
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~ 55 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSL 55 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHCCCH
Confidence 89999999999999999985
No 50
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=87.49 E-value=0.36 Score=56.07 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=61.4
Q ss_pred CCCEEec----cchHHHHHHHHHHC---------CCeeEEecCCCcEEeeccc------EEEEecc-CCC---------C
Q 011802 27 GVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDIW-LGE---------R 77 (477)
Q Consensus 27 GIp~i~A----PgEAEAqcA~L~~~---------G~VD~ViS~DsD~llFG~~------~Virn~~-~~~---------~ 77 (477)
++.+|.+ |||+|.-|....+. ....+|++.|.|++++|=. .++|.-. .+. .
T Consensus 163 ~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~ 242 (1155)
T 3pie_A 163 NVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLET 242 (1155)
T ss_pred ccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccccccc
Confidence 4566664 89999866543331 3478999999999999731 3677421 110 1
Q ss_pred ceEEEEeHHHHHHHh-------------CCC--H--HHHHHHHHHhCCCCCCCCCCCcHH
Q 011802 78 GYVVCYEMDDIERKL-------------GFG--R--NSLITLALLLGSDYSQGVRGLGPE 120 (477)
Q Consensus 78 ~~v~~y~~~~I~~~l-------------gL~--r--~q~IdlaiL~GsDY~pGVpGIG~k 120 (477)
..+.+++..-+.+.+ .++ | +.||.+|.|+|.||+|.+|.+.+.
T Consensus 243 ~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 243 QNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred CCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 345677775444322 122 2 577889999999999999988643
No 51
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=86.59 E-value=0.71 Score=37.22 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=39.3
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
+..|+.....+|--.|=|.|.+.+. ..+||+..+...||.+|-+|-++
T Consensus 25 ~EkIlg~t~~~Gel~fLVKWKg~~e--~dlVpa~ean~k~PqlVI~FYEe 72 (75)
T 3i3c_A 25 PEKIIGATDSCGDLMFLMKWKDTDE--ADLVLAKEANVKCPQIVIAFYEE 72 (75)
T ss_dssp EEEEEEEEC---CCEEEEEETTSSC--EEEEEHHHHHHHCHHHHHHHHTC
T ss_pred eeEEeeEEccCCcEEEEEEECCCCh--hceEEHHHHhhhChHHHHHHHHH
Confidence 4689888899999999999999886 55899999999999999999553
No 52
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=84.96 E-value=1.1 Score=36.42 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=42.6
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHH
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 327 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~ 327 (477)
+..|+.....+|--.|=|.|.+.+. ..+||+..+...||.+|-+|-++.
T Consensus 12 ~EkI~g~~~~~Gel~fLvKWKg~~~--~dlVpa~ean~k~PqlVI~FYE~~ 60 (78)
T 3q6s_A 12 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 60 (78)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSC--EEEEEHHHHHHHSHHHHHHHHHTT
T ss_pred ceEEeeEEcCCCcEEEEEEECCCCh--hheEeHHHHHhhChHHHHHHHHHh
Confidence 3588888899999999999999885 558999999999999999996654
No 53
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=84.31 E-value=0.55 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
.||||||+++|..|++.||+.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~ 192 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLE 192 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHH
T ss_pred cCCCCcCHHHHHHHHHHcCCHH
Confidence 6999999999999999999964
No 54
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=81.68 E-value=1.8 Score=35.92 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=42.7
Q ss_pred cceeeeccccCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHHHh
Q 011802 277 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 328 (477)
Q Consensus 277 ~~~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~~~ 328 (477)
+..|+.....+|---|=|.|.+.+.. .+||+..+...||.+|-+|-++..
T Consensus 28 ~EkIlgat~~~Gel~fLVKWKg~~e~--DlVpa~ean~k~PqlVI~FYEerl 77 (87)
T 3p7j_A 28 AEKILGASDNNGRLTFLIQFKGVDQA--EMVPSSVANEKIPRMVIHFYEERL 77 (87)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSSC--EEEEHHHHHHHCHHHHHHHHHHTC
T ss_pred ceEEeeEEccCCcEEEEEEECCCCcc--ceEeHHHHhhhChHHHHHHHHHhc
Confidence 45888888899999999999998854 479999999999999999965543
No 55
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=74.10 E-value=1.9 Score=40.26 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=19.2
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 011802 113 GVRGLGPESACQIVKSVGDN 132 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~ 132 (477)
||||||+++|..|++.||+.
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~ 185 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSL 185 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHcCCH
Confidence 89999999999999999995
No 56
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=73.19 E-value=0.7 Score=44.52 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 011802 112 QGVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~gs~~ 133 (477)
.||||||+++|..|++.||+.+
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~ 197 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVK 197 (226)
T ss_dssp ----------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHH
Confidence 5999999999999999999964
No 57
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=72.51 E-value=2.4 Score=36.88 Aligned_cols=52 Identities=8% Similarity=0.187 Sum_probs=40.7
Q ss_pred eeeeccccCCceeeEEEecccCcceeeeeehhhhhh---hcchhHHHHHHHHhcc
Q 011802 279 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES---ACPEKIVEFEERRALR 330 (477)
Q Consensus 279 ~I~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~---a~Pe~v~~f~~~~~~~ 330 (477)
.|+..|..+|..=|-|.|.|-+..-.+|+|.+=+.. ....+|..|.++..+.
T Consensus 47 ~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~~e~ 101 (115)
T 2b2y_C 47 AGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (115)
T ss_dssp TTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-----
T ss_pred cccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999998864 2346999998875444
No 58
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=64.97 E-value=4.9 Score=37.38 Aligned_cols=50 Identities=8% Similarity=0.221 Sum_probs=42.8
Q ss_pred eeccccCCceeeEEEecccCcceeeeeehhhhhh---hcchhHHHHHHHHhcc
Q 011802 281 IKSRKLQGKECFEVSWEESYGLKSSVVPADLIES---ACPEKIVEFEERRALR 330 (477)
Q Consensus 281 ~K~R~~~gv~cyev~w~~~~~l~~s~vP~~lv~~---a~Pe~v~~f~~~~~~~ 330 (477)
+..|...|..-|-|.|.+...+-.+|+|.+-+.. ..+.++..|.++....
T Consensus 49 ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~ 101 (187)
T 2b2y_A 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (187)
T ss_dssp CC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhcc
Confidence 5678889999999999999999999999999873 5678899999887654
No 59
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=55.05 E-value=7.6 Score=40.97 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.4
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 011802 113 GVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~ 133 (477)
.||||||++|..|+..||+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe 492 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYS 492 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHH
T ss_pred ccCCCCHHHHHHHHHHhcCHH
Confidence 589999999999999999964
No 60
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=53.95 E-value=5.9 Score=30.75 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHHh
Q 011802 112 QGVRGLGPESACQIVKSV 129 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~ 129 (477)
..|||||+++|.+|+..+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 368999999999999865
No 61
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=47.36 E-value=15 Score=35.01 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.5
Q ss_pred CCCCCCcHHHHHHHHHH
Q 011802 112 QGVRGLGPESACQIVKS 128 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~ 128 (477)
.-+||||+|+|.+|+-.
T Consensus 29 ~~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 29 SKLPGIGPKTAQRLAFF 45 (212)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHH
Confidence 37899999999998765
No 62
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=43.54 E-value=16 Score=33.63 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=35.4
Q ss_pred CceeeEEEecccCcceeeeeehhhhhhhcchh--HHHHHHHHhc
Q 011802 288 GKECFEVSWEESYGLKSSVVPADLIESACPEK--IVEFEERRAL 329 (477)
Q Consensus 288 gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~--v~~f~~~~~~ 329 (477)
|..-|=|.|.+...+-.+|+|.+-+.. ||.+ +..|.++...
T Consensus 45 ~~~EYlVKWKg~Sy~HnTWe~ee~L~~-~~glkKl~nf~kk~~~ 87 (177)
T 2h1e_A 45 ENYEFLIKWTDESHLHNTWETYESIGQ-VRGLKRLDNYCKQFII 87 (177)
T ss_dssp HHEEEEEEETTSCGGGCEEECHHHHCS-CTTHHHHHHHHHHHTH
T ss_pred CceEEEEEECCCccccCeecCHHHHhh-chHHHHHHHHHHHhhh
Confidence 345688999999999999999999986 8998 9999887653
No 63
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=43.09 E-value=19 Score=34.71 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 011802 113 GVRGLGPESACQIVKS 128 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~ 128 (477)
-+||||+|+|.+|+-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6899999999999865
No 64
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=42.05 E-value=12 Score=34.80 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHhC
Q 011802 109 DYSQGVRGLGPESACQIVKSVG 130 (477)
Q Consensus 109 DY~pGVpGIG~ktA~kLIk~~g 130 (477)
+.+..|||||+|+|.+++..+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3446999999999999987654
No 65
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=41.76 E-value=13 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.7
Q ss_pred CCCCCCCcHHHHHHHHHHhCC
Q 011802 111 SQGVRGLGPESACQIVKSVGD 131 (477)
Q Consensus 111 ~pGVpGIG~ktA~kLIk~~gs 131 (477)
+..|||||+|+|.+|+.++.+
T Consensus 125 L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHTT
T ss_pred HhhCCCCCHHHHHHHHHHHHH
Confidence 359999999999999977654
No 66
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=40.20 E-value=15 Score=40.51 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.1
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 011802 113 GVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~ 133 (477)
||||||+++|..|++.||+.+
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~ 536 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLE 536 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHH
T ss_pred cccCccHHHHHHHHHHcCCHH
Confidence 888999999999988888864
No 67
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=37.92 E-value=6.8 Score=37.88 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHH-hCCHHHHH
Q 011802 112 QGVRGLGPESACQIVKS-VGDNVVLQ 136 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~-~gs~~iL~ 136 (477)
..|||||+++|..|+.. |++.+-+.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 48999999999999998 77754333
No 68
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=37.88 E-value=6.8 Score=42.84 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHH
Q 011802 113 GVRGLGPESACQIVKSVGDNVVL 135 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~iL 135 (477)
||||||+++|..|++.||+.+-+
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L 555 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAI 555 (615)
T ss_dssp -----------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHH
Confidence 99999999999999999997533
No 69
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=34.78 E-value=25 Score=34.35 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHhCCH-HHHHHHHhc
Q 011802 113 GVRGLGPESACQIVKSVGDN-VVLQRIASE 141 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~-~iL~~i~~~ 141 (477)
.||||+++.|..|++.|++. .+++.++..
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~ 270 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDKC 270 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 79999999999999999997 577777654
No 70
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=33.46 E-value=20 Score=39.50 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.1
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 011802 113 GVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~ 133 (477)
||||||+++|..|++.||+.+
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~ 531 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMD 531 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHH
T ss_pred ccCCccHHHHHHHHHHcCCHH
Confidence 899999999999999999854
No 71
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=33.28 E-value=19 Score=30.02 Aligned_cols=17 Identities=47% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHHH
Q 011802 112 QGVRGLGPESACQIVKS 128 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~ 128 (477)
..+||||++.|.+++..
T Consensus 29 ~~lpGIG~~~A~~IV~~ 45 (97)
T 3arc_U 29 IQYRGLYPTLAKLIVKN 45 (97)
T ss_dssp GGSTTCTTHHHHHHHHH
T ss_pred hHCCCCCHHHHHHHHHc
Confidence 37899999999999983
No 72
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=33.24 E-value=21 Score=31.69 Aligned_cols=16 Identities=50% Similarity=0.503 Sum_probs=14.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 011802 113 GVRGLGPESACQIVKS 128 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~ 128 (477)
.+|||||++|.++|+.
T Consensus 67 ~LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKN 82 (134)
T ss_dssp GSTTCTHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHc
Confidence 5899999999999953
No 73
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=31.80 E-value=29 Score=37.63 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 011802 113 GVRGLGPESACQIVKSVGDNV 133 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~gs~~ 133 (477)
|||+||..+|..|++.|++++
T Consensus 516 GI~~vG~~~a~~La~~f~sl~ 536 (586)
T 4glx_A 516 GIREVGEATAAGLAAYFGTLE 536 (586)
T ss_dssp TCTTCCHHHHHHHHHHHCSHH
T ss_pred CCCchhHHHHHHHHHHcCCHH
Confidence 566666666666666666643
No 74
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=31.62 E-value=23 Score=28.91 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHHh
Q 011802 112 QGVRGLGPESACQIVKSV 129 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~~ 129 (477)
..|||||+++|.+|+..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 479999999999999765
No 75
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.43 E-value=26 Score=32.85 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCCCCCCcHHHHHHHHHHh
Q 011802 111 SQGVRGLGPESACQIVKSV 129 (477)
Q Consensus 111 ~pGVpGIG~ktA~kLIk~~ 129 (477)
+..|||||+|+|.+++..+
T Consensus 110 L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 110 LVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHTSTTCCHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHH
Confidence 4599999999999998654
No 76
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=28.25 E-value=24 Score=35.36 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHH
Q 011802 112 QGVRGLGPESACQIVKS 128 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~ 128 (477)
-.|||||+|+|.+|..+
T Consensus 101 ~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDE 117 (335)
T ss_dssp TTSTTCCHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHc
Confidence 48999999999999887
No 77
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=27.82 E-value=25 Score=35.68 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 011802 113 GVRGLGPESACQIVKS 128 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~ 128 (477)
.|+|||+|+|.+|.++
T Consensus 106 ~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQE 121 (360)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHc
Confidence 8999999999999887
No 78
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=27.04 E-value=26 Score=35.87 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=15.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 011802 113 GVRGLGPESACQIVKS 128 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~ 128 (477)
.|+|||+|+|.+|.++
T Consensus 125 ~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM 140 (381)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHc
Confidence 8999999999999987
No 79
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=26.71 E-value=27 Score=35.07 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHH-hCCHH
Q 011802 112 QGVRGLGPESACQIVKS-VGDNV 133 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~-~gs~~ 133 (477)
..|||||||+|.+|..+ +.+++
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tle 121 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLE 121 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHH
Confidence 38999999999999887 33443
No 80
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=26.70 E-value=32 Score=36.86 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=19.8
Q ss_pred CCCCCCcHHHHHHHHHH-hCCH-HHHHH
Q 011802 112 QGVRGLGPESACQIVKS-VGDN-VVLQR 137 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~-~gs~-~iL~~ 137 (477)
-+|+|||||+|.+|+.. |.+. ++.+.
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a 127 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREA 127 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 48999999999999987 4454 34444
No 81
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.23 E-value=27 Score=37.39 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCCCCcHHHHHHHHHHh--CCH-HHHHHHH
Q 011802 113 GVRGLGPESACQIVKSV--GDN-VVLQRIA 139 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~--gs~-~iL~~i~ 139 (477)
+|+|||||+|..++... .+. ++.+.+.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 79999999999999974 444 4555443
No 82
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=24.60 E-value=52 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 011802 449 DSETEKSPELERKARALRMFIASIRDDI 476 (477)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (477)
||++.|+.|+.+|-|++-.=+.-.|+++
T Consensus 5 ~~~~~~~ee~r~klR~IEvk~me~rD~L 32 (61)
T 2e62_A 5 SSGNGMDEEQRQKRRRIEVALIEYRETL 32 (61)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998876666666543
No 83
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=23.79 E-value=88 Score=24.40 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=35.3
Q ss_pred ceeeeccc-cCCceeeEEEecccCcceeeeeehhhhhhhcchhHHHHHHH
Q 011802 278 TGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 326 (477)
Q Consensus 278 ~~I~K~R~-~~gv~cyev~w~~~~~l~~s~vP~~lv~~a~Pe~v~~f~~~ 326 (477)
..|..-.. ..|-=-|=+.|.+.+. .. ||+.+...-||.+|-.|-+.
T Consensus 14 e~I~g~~~~~~g~L~flikwk~~~~--~~-Vpa~~a~~kcPq~vI~FYE~ 60 (68)
T 1e0b_A 14 SSIDTIERKDDGTLEIYLTWKNGAI--SH-HPSTITNKKCPQKMLQFYES 60 (68)
T ss_dssp EEEEEEEECTTSCEEEEEEETTSCE--EE-EEHHHHHHHSHHHHHHHHHT
T ss_pred eEEEEEEECCCCEEEEEEEECCCCc--cc-eEHHHhHhhCCHHHHHHHHH
Confidence 34444444 6777778899998875 33 99999999999999999664
No 84
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=22.84 E-value=36 Score=32.26 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=30.4
Q ss_pred hCCCHHHHHHHHHHhC---CCC--CCCCCCCcHHHHHHHHHH-----hCCHH-HHHHHH
Q 011802 92 LGFGRNSLITLALLLG---SDY--SQGVRGLGPESACQIVKS-----VGDNV-VLQRIA 139 (477)
Q Consensus 92 lgL~r~q~IdlaiL~G---sDY--~pGVpGIG~ktA~kLIk~-----~gs~~-iL~~i~ 139 (477)
..=....|+++.--+| .+. +..+||||+++|..+|.. |.+.+ +.+++.
T Consensus 110 V~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~ 168 (205)
T 2i5h_A 110 IKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp HHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred HHhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 3346688888755444 233 248999999999999963 55543 434444
No 85
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=22.15 E-value=38 Score=32.06 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCCCCcHHHHHHHHHHhC
Q 011802 113 GVRGLGPESACQIVKSVG 130 (477)
Q Consensus 113 GVpGIG~ktA~kLIk~~g 130 (477)
.+||||+|||--++..+|
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 899999999987776555
No 86
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=21.79 E-value=45 Score=30.88 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=14.4
Q ss_pred CCCCCCcHHHHHHHHHH
Q 011802 112 QGVRGLGPESACQIVKS 128 (477)
Q Consensus 112 pGVpGIG~ktA~kLIk~ 128 (477)
-.+||||++||--++.-
T Consensus 120 ~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 120 LNIKGIGMQEASHFLRN 136 (207)
T ss_dssp TTSTTCCHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHHH
Confidence 49999999999887753
No 87
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.29 E-value=1.4e+02 Score=23.88 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCEEeccchHHHHHHHHHHCCCeeEEecCCCcEEeec
Q 011802 19 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 64 (477)
Q Consensus 19 ik~LL~~~GIp~i~APgEAEAqcA~L~~~G~VD~ViS~DsD~llFG 64 (477)
+..|.+.||++ +.|+|..++.|...|.+.|.+-.-..++.|.
T Consensus 33 l~~La~ll~ls----~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 33 FEELGALLEIP----AAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHHTTSC----HHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHHHCcC----HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 45778889987 6699999999999999888887766666664
No 88
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.76 E-value=49 Score=35.93 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHCCCeeEEecCCCcEEeecccEE--------------EEeccCCCCceEEEEeHHHHHHHhCCCH---
Q 011802 34 VEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV--------------YRDIWLGERGYVVCYEMDDIERKLGFGR--- 96 (477)
Q Consensus 34 PgEAEAqcA~L~~~G~VD~ViS~DsD~llFG~~~V--------------irn~~~~~~~~v~~y~~~~I~~~lgL~r--- 96 (477)
.|=.+..+..|...|++. +=.|+|-+....+ +..+... + -.....+.--||+..
T Consensus 452 ~GlG~~~i~~L~~~g~i~----~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~s--k---~~~l~r~l~aLGI~~vG~ 522 (586)
T 4glx_A 452 DGMGDKIIDQLVEKEYVH----TPADLFKLTAGKLTGLERMGPKSAQNVVNALEKA--K---ETTFARFLYALGIREVGE 522 (586)
T ss_dssp TTCCHHHHHHHHHTTCCS----SGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHH--T---BCCHHHHHHHTTCTTCCH
T ss_pred CCcCHHHHHHHHhcCCCC----CHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHH--c---CCCHHHHHHHcCCCchhH
Confidence 344667888899988753 3345554432211 1111000 1 123445555566532
Q ss_pred -------HHHHHHHHHhCCCC--CCCCCCCcHHHHHHHHHHhCCH---HHHHHHHhcChhH
Q 011802 97 -------NSLITLALLLGSDY--SQGVRGLGPESACQIVKSVGDN---VVLQRIASEGLSF 145 (477)
Q Consensus 97 -------~q~IdlaiL~GsDY--~pGVpGIG~ktA~kLIk~~gs~---~iL~~i~~~~~~~ 145 (477)
..|-.+-.|...++ +..|+|||+++|..++.-|... ++++++...|+.|
T Consensus 523 ~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~n~~~i~~L~~~Gv~~ 583 (586)
T 4glx_A 523 ATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHW 583 (586)
T ss_dssp HHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHHHHHHHHHHHHcCCCC
Confidence 11112333444333 3599999999999999988774 4777777666543
No 89
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=20.33 E-value=48 Score=31.23 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCcccccceeehh
Q 011802 220 RLHQVCAQFFQWPPEKTDEYILPK 243 (477)
Q Consensus 220 ~L~~f~~~~f~W~~~~~~e~llPl 243 (477)
.|..|+ +.++++..+.|=+||-.
T Consensus 185 ~l~~~g-~~~g~~~g~lDl~lW~~ 207 (214)
T 3fhf_A 185 ILRDIG-EEVNLKLSELDLYIWYL 207 (214)
T ss_dssp HHHHHH-HHTTCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHHH
Confidence 456666 77888888777777744
No 90
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=20.27 E-value=71 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCH-HHHHHHH
Q 011802 94 FGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN-VVLQRIA 139 (477)
Q Consensus 94 L~r~q~IdlaiL~GsDY~pGVpGIG~ktA~kLIk~~gs~-~iL~~i~ 139 (477)
++.+.+.....|. -+||||++++.+|++.||+. .+++.+.
T Consensus 17 m~~~e~~~wL~L~------~~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLI------RAENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHH------TSTTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------cCCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 5555665555554 67899999999999999996 5776543
Done!