Query 011803
Match_columns 477
No_of_seqs 206 out of 420
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 1.3E-23 2.9E-28 213.6 7.6 65 254-319 231-295 (526)
2 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 6.2E-23 1.3E-27 158.1 6.6 48 342-389 1-49 (51)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 6.4E-21 1.4E-25 149.3 6.8 56 258-313 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00056 1.2E-08 50.9 5.2 48 260-311 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 89.3 0.65 1.4E-05 36.8 4.3 33 357-390 6-39 (51)
6 smart00426 TEA TEA domain. 84.7 1.2 2.7E-05 37.1 3.6 18 262-279 5-22 (68)
7 PF15235 GRIN_C: G protein-reg 77.1 1.6 3.6E-05 40.7 2.1 20 363-382 70-89 (137)
8 smart00717 SANT SANT SWI3, AD 69.6 16 0.00036 25.2 5.3 44 261-310 2-46 (49)
9 cd00167 SANT 'SWI3, ADA2, N-Co 63.4 31 0.00066 23.6 5.7 44 262-310 1-44 (45)
10 PF01285 TEA: TEA/ATTS domain 61.3 8.5 0.00018 41.6 3.7 54 256-310 45-112 (431)
11 PF12776 Myb_DNA-bind_3: Myb/S 56.8 15 0.00032 30.2 3.6 51 262-312 1-63 (96)
12 PF01519 DUF16: Protein of unk 39.7 1.2E+02 0.0025 27.5 6.7 26 362-387 65-90 (102)
13 smart00501 BRIGHT BRIGHT, ARID 39.7 28 0.0006 29.2 2.7 45 266-311 33-84 (93)
14 PF07384 DUF1497: Protein of u 35.5 30 0.00065 27.9 2.1 21 262-282 37-57 (59)
15 TIGR02894 DNA_bind_RsfA transc 29.2 35 0.00077 32.8 1.9 51 256-312 44-94 (161)
16 PRK10803 tol-pal system protei 23.4 1.8E+02 0.004 29.2 5.8 42 350-391 54-95 (263)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=1.3e-23 Score=213.65 Aligned_cols=65 Identities=48% Similarity=0.741 Sum_probs=60.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhcccCCCC
Q 011803 254 NAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDS 319 (477)
Q Consensus 254 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~r~~~ 319 (477)
...+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+++++...
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 34789999999999999999999999 699999999999999999999999999999999886543
No 2
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.88 E-value=6.2e-23 Score=158.13 Aligned_cols=48 Identities=75% Similarity=1.100 Sum_probs=46.1
Q ss_pred ccChHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hh
Q 011803 342 GIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KS 389 (477)
Q Consensus 342 ~~~i~eALr~QmEvQkrLhEQLEvQR~LQlRIEaqgKyLq~mlek~-k~ 389 (477)
|++|+||||+||||||||||||||||+||+|||||||||++|||+| +.
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~ 49 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKA 49 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999 54
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.83 E-value=6.4e-21 Score=149.30 Aligned_cols=56 Identities=57% Similarity=0.952 Sum_probs=54.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhhc
Q 011803 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA 313 (477)
Q Consensus 258 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 313 (477)
|+|++||+|+|.+||+||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.28 E-value=0.00056 Score=50.88 Aligned_cols=48 Identities=33% Similarity=0.403 Sum_probs=41.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhh
Q 011803 260 RMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR 311 (477)
Q Consensus 260 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 311 (477)
|..||+|=+++|++||.++|.- .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999931 5888999988 7899999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=89.35 E-value=0.65 Score=36.80 Aligned_cols=33 Identities=39% Similarity=0.469 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhc
Q 011803 357 KRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ-KSG 390 (477)
Q Consensus 357 krLhEQLEvQR~LQlRIEaqgKyLq~mlek~-k~~ 390 (477)
.-|+.|+||||.|+=.+|.| |.||.-+|.+ |-.
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 56889999999999999998 6778767766 543
No 6
>smart00426 TEA TEA domain.
Probab=84.73 E-value=1.2 Score=37.14 Aligned_cols=18 Identities=33% Similarity=0.756 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 011803 262 RWTPELHEAFVEAVNQLG 279 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLG 279 (477)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999998775
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=77.07 E-value=1.6 Score=40.65 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 011803 363 LEIQRNLQLRIEEQGKYLQM 382 (477)
Q Consensus 363 LEvQR~LQlRIEaqgKyLq~ 382 (477)
+.||+||+++||+|+|.+..
T Consensus 70 ~AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 70 MAIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 35899999999999887654
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=69.59 E-value=16 Score=25.20 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011803 261 MRWTPELHEAFVEAVNQLG-GSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 261 lrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
-.||++=...|+.+|.++| + .=+.|-+.|+ +-|...|+.+..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN----NWEKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4699999999999999999 4 2466666665 78888888876543
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=63.42 E-value=31 Score=23.55 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhh
Q 011803 262 RWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 310 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 310 (477)
.||.+=+..|+.++.++|- ..=+.|-+.|+ +-|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 23466777764 47888898887654
No 10
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=61.32 E-value=8.5 Score=41.60 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHH-hhcC-------------CCCCCHHHHHHHHhhh
Q 011803 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVL-KLMK-------------VEGLTIYHVKSHLQKY 310 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL-~lM~-------------v~gLT~~hVKSHLQKY 310 (477)
..+..-+|.+++...|++|+...-=..+++ -.+. +..| =.--|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k-~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRK-LSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS----HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcc-cccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 467888999999999999997764111222 1111 1111 1336888999999998
No 11
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=56.82 E-value=15 Score=30.18 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHh---CCC-CCCChH-----HHHhhcC-C--CCCCHHHHHHHHhhhhh
Q 011803 262 RWTPELHEAFVEAVNQL---GGS-ERATPK-----GVLKLMK-V--EGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qL---GG~-~kAtPK-----~IL~lM~-v--~gLT~~hVKSHLQKYRl 312 (477)
+||++..+-||+.+-+. |+- .....| .|.+.|+ . -.+|..|||+|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988433 433 233333 3455554 2 45688999999985443
No 12
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=39.72 E-value=1.2e+02 Score=27.45 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011803 362 QLEIQRNLQLRIEEQGKYLQMMFEKQ 387 (477)
Q Consensus 362 QLEvQR~LQlRIEaqgKyLq~mlek~ 387 (477)
|=|.-+.||.+|.+||+-|++|++.-
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L 90 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTL 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555889999999999999998765
No 13
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=39.68 E-value=28 Score=29.17 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCC----hHHHHhhcCCCCC---CHHHHHHHHhhhh
Q 011803 266 ELHEAFVEAVNQLGGSERAT----PKGVLKLMKVEGL---TIYHVKSHLQKYR 311 (477)
Q Consensus 266 ELH~rFV~AV~qLGG~~kAt----PK~IL~lM~v~gL---T~~hVKSHLQKYR 311 (477)
+|+..|+ +|..+||.+..+ =+.|.+.|+++.- ...++|+|-+||=
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 7899998 599999965433 3567888998752 2456888888874
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=35.55 E-value=30 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 011803 262 RWTPELHEAFVEAVNQLGGSE 282 (477)
Q Consensus 262 rWT~ELH~rFV~AV~qLGG~~ 282 (477)
++..|+|..|-+-|.+|||-+
T Consensus 37 kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 37 KFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred HhhHHHHHHHHHHHHHhcccc
Confidence 578999999999999999843
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.16 E-value=35 Score=32.82 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHHhhhhh
Q 011803 256 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312 (477)
Q Consensus 256 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 312 (477)
.....|||...+-.++.+||...- -.+-.++.. ...||+..|-+-||.|..
T Consensus 44 sAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 44 AAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 457899999999999999998644 111111111 266999999999999873
No 16
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.37 E-value=1.8e+02 Score=29.18 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcc
Q 011803 350 RLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQKSGI 391 (477)
Q Consensus 350 r~QmEvQkrLhEQLEvQR~LQlRIEaqgKyLq~mlek~k~~~ 391 (477)
++|+|+|.+|.+.-.=-+.|.=.||++..-|+.|.++|+...
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777887765433346677789999999999999886644
Done!