BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011804
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/375 (21%), Positives = 138/375 (36%), Gaps = 79/375 (21%)
Query: 146 SLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCN 205
SL+LD + W+ C + +IPC+S +C +L ++P C
Sbjct: 25 SLVLDVAGPLVWSTCD----------------GGQPPAEIPCSSPTC-LLANAYPAPGCP 67
Query: 206 SKEC------------PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRY--PFLLGCI 251
+ C P+N G+ + G + R + + ++ L C
Sbjct: 68 APSCGSDKHDKPCTAYPYN--PVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 252 NNS--SGDKSGASGIMGLDRSPVSIITRTNTSY-----FSYCLPSPYGSTGYITFGKTDT 304
+ + G++G+ GL S +++ + ++ F CLP+ G G FG
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 305 VNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITR 361
+F + YTP+VT Y I I VG ++P G ++ TR
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEGALATGGVMLS-----TR 237
Query: 362 LP-----PPIYAALRSAFHKRMKKYKK-----AKGLEDL--LDTCYD-------LSAYET 402
LP P +Y L AF K + A+ +E + CYD L Y
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA- 296
Query: 403 VVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGF------ATYPPDPNSITLGNVQQR 456
VP + + GG D + + ++V C+ F A ++ LG Q
Sbjct: 297 --VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQME 354
Query: 457 GHEVHYDVAGRRLGF 471
+ +D+ +RLGF
Sbjct: 355 DFVLDFDMEKKRLGF 369
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 108/275 (39%), Gaps = 52/275 (18%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTW-----TQCKPCIHCFQQRDPFFYASKSKTFFKI 185
Y V++G KQ ++++DTGS W QC + C S TF
Sbjct: 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC----------KSSGTF--T 60
Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY----F 241
P +S+S + L F I+Y DGS S G W D +TI + G
Sbjct: 61 PSSSSSYKNLG------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADV 108
Query: 242 TRYPFLLGCI------NNSSGDKSGASGIMGLDRSPVSIIT--RTNTSYFSYCLPSPYGS 293
T+ G + N + D SG D PV++ + T+ +S L SP
Sbjct: 109 TQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE 168
Query: 294 TGYITFGKTDTVNSKFI-KYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAI 352
TG I FG D N+K+ K TS Q+ I L +++ G F GA+
Sbjct: 169 TGTIIFGGVD--NAKYSGKLVAEQVTSSQA--LTISLASVNLKGSSFSFGD------GAL 218
Query: 353 IDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL 387
+DSG +T P A L R+ + + + L
Sbjct: 219 LDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYL 253
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 137/377 (36%), Gaps = 81/377 (21%)
Query: 145 VSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNC 204
SL+LD + W+ CK + +IPC+S +C +L ++P C
Sbjct: 24 ASLVLDVAGPLVWSTCK----------------GGQPPAEIPCSSPTC-LLANAYPAPGC 66
Query: 205 NSKEC------------PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRY--PFLLGC 250
+ C P+N G+ + G + R + + ++ L C
Sbjct: 67 PAPSCGSDKHDKPCTAYPYN--PVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAAC 124
Query: 251 INNS--SGDKSGASGIMGLDRSPVSIITRTNTSY-----FSYCLPSPYGSTGYITFGKTD 303
+ + G++G+ GL S +++ + ++ F CLP+ G G FG
Sbjct: 125 APSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGP 182
Query: 304 TVNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIIT 360
+F + YTP+VT Y I I VG ++P G ++ T
Sbjct: 183 VPWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEGALATGGVMLS-----T 236
Query: 361 RLP-----PPIYAALRSAFHKRMKKYKKAKGLEDL--------LDTCYD-------LSAY 400
RLP P +Y L AF K + + A G CYD L Y
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAA-QHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGY 295
Query: 401 ETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGF------ATYPPDPNSITLGNVQ 454
VP + + GG D + + ++V C+ F A ++ LG Q
Sbjct: 296 A---VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352
Query: 455 QRGHEVHYDVAGRRLGF 471
+ +D+ +RLGF
Sbjct: 353 MEDFVLDFDMEKKRLGF 369
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 151/389 (38%), Gaps = 71/389 (18%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTF 182
N+ YY+ + IG P Q + +L+DTGS P H + D +F +S T+
Sbjct: 6 NLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTP--HSY--IDTYFDTERSSTY 61
Query: 183 FKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFT 242
SK ++Y GS +G F D +TI + G+ T
Sbjct: 62 ----------------------RSKGFDVTVKYTQGSWTG-FVGEDLVTIPK----GFNT 94
Query: 243 RYPFLLGCINNSS-----GDKSGASGIMGLDRSPV------------SIITRTNT-SYFS 284
+ + I S G K +GI+GL + + S++T+ N + FS
Sbjct: 95 SFLVNIATIFESENFFLPGIK--WNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFS 152
Query: 285 Y-----CLPSPYGST--GYITFGKTD-TVNSKFIKYTPIVTTSEQSEFYDIILTGISVGG 336
LP T G + G + ++ I YTPI ++ +Y I + + +GG
Sbjct: 153 MQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPI----KEEWYYQIEILKLEIGG 208
Query: 337 KKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLD-TCY 395
+ L + + AI+DSG + RLP ++ A+ A + + + G C+
Sbjct: 209 QSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACW 268
Query: 396 DLSAYETVVVPKIAIHFL---GGVDLELDVRGTLVVASVSQVCLGFATY----PPDPNSI 448
S PKI+I+ + + L + + L + Y P N++
Sbjct: 269 TNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNAL 328
Query: 449 TLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477
+G G V +D A +R+GF C+
Sbjct: 329 VIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 156/411 (37%), Gaps = 65/411 (15%)
Query: 109 PEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQ 168
P F R A P D +Y + P +L++D G W C
Sbjct: 2 PSF--RPSALVVPVK-KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC-------- 50
Query: 169 QRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNC--------NSKEC-PFNIQYADGS 219
D + +S T+ + C ++ C L S G+C N+ C F +
Sbjct: 51 --DQNYVSS---TYRPVRCRTSQCS-LSGSIACGDCFNGPRPGCNNNTCGVFPENPVINT 104
Query: 220 GSGGFWATDRITIQ--EANSNGYFTRYP-FLLGCINNS--SGDKSGASGIMGLDRSPVSI 274
+GG A D ++++ + +S+G P F+ C S SG G+ GL R+ +++
Sbjct: 105 ATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIAL 164
Query: 275 ITRTNTSY-----FSYCLPSPYGSTGYITFGK-------TDTVNSKFIKYTPIVT----- 317
++ +++ F+ CL S I FG V+ K + YTP++T
Sbjct: 165 PSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVST 224
Query: 318 --TSEQSE---FYDIILTGISVGGKKLPFNTSYFTKF-----GAIIDSGNIITRLPPPIY 367
TS Q E Y I + I + K + NTS + G I + N T L IY
Sbjct: 225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIY 284
Query: 368 AALRSAFHKR-----MKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLG-GVDLELD 421
A+ AF K + + T LS VP I + V +
Sbjct: 285 KAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTIT 344
Query: 422 VRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDVAGRRLGF 471
++V + + VCLG + SI +G Q + V +D+A R+GF
Sbjct: 345 GSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 156/411 (37%), Gaps = 65/411 (15%)
Query: 109 PEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQ 168
P F R A P D +Y + P +L++D G W C
Sbjct: 2 PSF--RPSALVVPVK-KDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC-------- 50
Query: 169 QRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNC--------NSKEC-PFNIQYADGS 219
D + +S T+ + C ++ C L S G+C N+ C F +
Sbjct: 51 --DQNYVSS---TYRPVRCRTSQCS-LSGSIACGDCFNGPRPGCNNNTCGVFPENPVINT 104
Query: 220 GSGGFWATDRITIQ--EANSNGYFTRYP-FLLGCINNS--SGDKSGASGIMGLDRSPVSI 274
+GG A D ++++ + +S+G P F+ C S SG G+ GL R+ +++
Sbjct: 105 ATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIAL 164
Query: 275 ITRTNTSY-----FSYCLPSPYGSTGYITFGK-------TDTVNSKFIKYTPIVT----- 317
++ +++ F+ CL S I FG V+ K + YTP++T
Sbjct: 165 PSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVST 224
Query: 318 --TSEQSE---FYDIILTGISVGGKKLPFNTSYFTKF-----GAIIDSGNIITRLPPPIY 367
TS Q E Y I + I + K + NTS + G I + N T L IY
Sbjct: 225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIY 284
Query: 368 AALRSAFHKR-----MKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLG-GVDLELD 421
A+ AF K + + T LS VP I + V +
Sbjct: 285 KAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTIT 344
Query: 422 VRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDVAGRRLGF 471
++V + + VCLG + SI +G Q + V +D+A R+GF
Sbjct: 345 GSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 50/268 (18%)
Query: 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWT-QCKPCIHCFQQRDPFFYASKSKTF 182
IN+ V+ Y + +G KQ +++++DTGS W + Q +DP F
Sbjct: 8 INEQVS--YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNF-------- 57
Query: 183 FKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFT 242
C + S N NS PF+I+Y DG+ S G W D I + T
Sbjct: 58 ----CKNEGTYSPSSSSSSQNLNS---PFSIEYGDGTTSQGTWYKDTIGFGGIS----IT 106
Query: 243 RYPFLLGCINNSSGDKSGASGIMGL-----------DRSPVSIITR--TNTSYFSYCLPS 289
+ F + ++S D+ GI+G+ D PV++ + + + +S L S
Sbjct: 107 KQQF--ADVTSTSVDQ----GILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNS 160
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
++G I FG D N+K+ + + +E I L + V G+ + +
Sbjct: 161 RQATSGQIIFGGVD--NAKYSGTLIALPVTSDNELR-IHLNTVKVAGQSINADVD----- 212
Query: 350 GAIIDSGNIITRLPPPIYAALRSAFHKR 377
++DSG IT L + + SAF+ +
Sbjct: 213 -VLLDSGTTITYLQQGVADQVISAFNGQ 239
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 31 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 82
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 83 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 117
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 118 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 177
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 178 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 231
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 232 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 284
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 285 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 343
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 344 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 45 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 96
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 97 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 131
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 132 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 191
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 192 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 245
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 298
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 299 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 357
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 358 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 21 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 72
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 73 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 107
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 108 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 167
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 168 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 221
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 274
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 275 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 333
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 334 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 77
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 78 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 112
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 113 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 172
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 173 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 226
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 279
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 280 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 338
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 339 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 26 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 77
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 78 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 112
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 113 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 172
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 173 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 226
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 279
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 280 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 338
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 339 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 8 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 59
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 60 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 94
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S S GI+GL + + S++ +T+
Sbjct: 95 QVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 154
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 155 LQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 208
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 209 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 261
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 262 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT-QQSFRITILPQQYLRPVEDVATSQD 320
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 321 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 45 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 96
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 97 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 131
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 132 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 191
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 192 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 245
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 298
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 299 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 357
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 358 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/418 (21%), Positives = 151/418 (36%), Gaps = 98/418 (23%)
Query: 109 PEFLKRTEAFT-FPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIH 165
PE +T +F N+ YY+ + +G P Q +++L+DTGS P +H
Sbjct: 9 PEEPGKTGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH 68
Query: 166 CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFW 225
+ QR S++ R LR+ + Y G G
Sbjct: 69 RYYQRQL----------------SSTYRDLRKGV------------YVPYTQGKWEGEL- 99
Query: 226 ATDRITIQEANSNGYFTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV---------- 272
TD ++I +G + I S + S GI+GL + +
Sbjct: 100 GTDLVSI----PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPF 155
Query: 273 --SIITRTNTSYF--------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIV 316
S++ +T+ S L S GS I G ++ + + YTPI
Sbjct: 156 FDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI- 212
Query: 317 TTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHK 376
+ +Y++I+ + + G+ L + + +I+DSG RLP + F
Sbjct: 213 ---RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEA 262
Query: 377 RMKKYKKAKGLEDLLD--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 427
+K K A E D C+ + P I+++ +G V + R T++
Sbjct: 263 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 428 ---------VASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
VA+ C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ C K G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGVYVPYCQGK-------------WEGELGTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/398 (21%), Positives = 147/398 (36%), Gaps = 87/398 (21%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 21 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 72
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 73 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 107
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 108 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 167
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 168 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 221
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL---E 388
+ + G+ L + + +I+DSG RLP ++ A ++ K G E
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGE 281
Query: 389 DLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQVCLGF 438
L+ C+ + P I+++ +G V + R T++ VA+ C F
Sbjct: 282 QLV--CWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQDDCYKF 338
Query: 439 ATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
A ++ +G V G V +D A +R+GF C
Sbjct: 339 AISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 6 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 57
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 58 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 92
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S S GI+GL + + S++ +T+
Sbjct: 93 QVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 152
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 153 LQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 206
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 207 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 259
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 260 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILPQQYLRPVEDVATSQD 318
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 319 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 5 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 56
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 57 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 91
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S S GI+GL + + S++ +T+
Sbjct: 92 QVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 151
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 152 LQLCGAGFPLQQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 205
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 206 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 258
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 259 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT-QQSFRITILPQQYLRPVEDVATSQD 317
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 318 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 147/403 (36%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G+ +G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGAWAGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGCTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 22 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 73
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 74 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 108
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 109 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 168
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 169 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 222
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 223 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 275
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 276 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 334
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 335 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 24 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 75
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 76 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 110
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 111 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 170
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 171 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 224
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 277
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 278 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 336
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 337 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 62
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 63 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 97
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 98 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 157
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 158 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 211
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 264
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 265 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 323
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 324 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 62
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 63 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 97
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 98 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 157
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 158 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 211
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 264
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 265 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 323
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 324 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 10 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 61
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 62 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 96
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 97 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 156
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 157 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 210
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 211 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 263
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 264 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 322
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 323 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 23 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 74
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 75 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 109
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 110 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 169
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 170 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 223
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 224 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 276
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 277 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 335
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 336 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 62
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 63 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 97
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 98 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 157
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 158 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 211
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 264
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 265 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 323
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 324 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 21 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 72
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 73 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 107
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 108 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 167
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 168 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 221
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 274
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 275 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 333
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 334 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 9 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 60
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 61 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 95
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 96 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 155
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 156 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 209
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 262
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 263 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 321
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 28 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 79
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 80 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 114
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 115 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 174
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 175 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 228
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 229 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 281
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 282 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 340
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 341 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 21 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 72
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 73 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 107
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 108 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 167
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 168 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 221
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 274
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 275 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 333
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 334 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 9 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 60
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 61 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 95
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 96 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 155
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 156 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 209
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 262
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 263 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 321
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 21 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 72
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 73 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 107
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 108 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 167
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 168 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 221
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 274
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 275 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 333
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 334 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 8 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 59
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 60 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 94
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 95 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 154
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 155 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 208
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 209 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 261
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 262 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 320
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 321 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 24 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 75
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 76 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 110
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 111 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 170
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 171 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 224
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 277
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 278 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 336
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 337 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 65
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 66 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 100
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 101 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 160
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 161 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 214
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 267
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 268 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 326
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 327 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 9 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 60
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 61 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 95
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 96 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 155
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 156 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 209
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 262
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 263 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 321
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 9 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 60
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 61 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 95
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 96 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 155
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 156 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 209
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 262
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 263 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 321
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 14 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 65
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 66 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 100
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 101 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 160
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 161 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 214
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 267
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 268 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 326
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 327 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 9 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 60
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 61 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 95
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 96 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 155
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 156 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 209
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 262
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 263 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 321
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 322 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAA 369
+ YTPI + +Y++I+ + + G+ L + + +I+DSG RLP
Sbjct: 180 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP------ 229
Query: 370 LRSAFHKRMKKYKKAKGLEDLLD--------TCYDLSAYETVVVPKIAIHFLGGVDLELD 421
+ F +K K A E D C+ + P I+++ +G V +
Sbjct: 230 -KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-S 287
Query: 422 VRGTLV----------VASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGF 471
R T++ VA+ C FA ++ +G V G V +D A +R+GF
Sbjct: 288 FRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGF 346
Query: 472 GPGNC 476
C
Sbjct: 347 AVSAC 351
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQR 170
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 11 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQR 60
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 6 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 57
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 58 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 92
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 93 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 152
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 153 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 206
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 207 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 259
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 260 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 318
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 319 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAISQSSCGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 145/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 68 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 119
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 120 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 154
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 155 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 214
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 215 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 268
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 269 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 321
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 322 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 380
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA ++ +G V G V +D A +R+GF C
Sbjct: 381 DCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 153/430 (35%), Gaps = 97/430 (22%)
Query: 96 LHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSD- 154
L L+ R + E +R N+ YY+ + +G P Q +++L+DTGS
Sbjct: 41 LGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSN 100
Query: 155 -VTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNI 213
P +H + QR S++ R LR+ +
Sbjct: 101 FAVGAAPHPFLHRYYQRQL----------------SSTYRDLRKGV------------YV 132
Query: 214 QYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG---DKSGASGIMGLDRS 270
Y G G TD ++I +G + I S + S GI+GL +
Sbjct: 133 PYTQGKWEGEL-GTDLVSI----PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYA 187
Query: 271 PV------------SIITRTNTSYF--------------SYCLPSPYGSTGYITFGKTDT 304
+ S++ +T+ S L S GS I G +
Sbjct: 188 EIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHS 245
Query: 305 VNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPP 364
+ + + YTPI + +Y++I+ + + G+ L + + +I+DSG RLP
Sbjct: 246 LYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP- 300
Query: 365 PIYAALRSAFHKRMKKYKKAKGLEDLLD--------TCYDLSAYETVVVPKIAIHFLGGV 416
+ F +K K A E D C+ + P I+++ +G V
Sbjct: 301 ------KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV 354
Query: 417 DLELDVRGTLV----------VASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAG 466
+ R T++ VA+ C FA ++ +G V G V +D A
Sbjct: 355 TNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRAR 412
Query: 467 RRLGFGPGNC 476
+R+GF C
Sbjct: 413 KRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 153/430 (35%), Gaps = 97/430 (22%)
Query: 96 LHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSD- 154
L L+ R + E +R N+ YY+ + +G P Q +++L+DTGS
Sbjct: 40 LGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSN 99
Query: 155 -VTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNI 213
P +H + QR S++ R LR+ +
Sbjct: 100 FAVGAAPHPFLHRYYQRQL----------------SSTYRDLRKGV------------YV 131
Query: 214 QYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG---DKSGASGIMGLDRS 270
Y G G TD ++I +G + I S + S GI+GL +
Sbjct: 132 PYTQGKWEGEL-GTDLVSI----PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYA 186
Query: 271 PV------------SIITRTNTSYF--------------SYCLPSPYGSTGYITFGKTDT 304
+ S++ +T+ S L S GS I G +
Sbjct: 187 EIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSM--IIGGIDHS 244
Query: 305 VNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPP 364
+ + + YTPI + +Y++I+ + + G+ L + + +I+DSG RLP
Sbjct: 245 LYTGSLWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP- 299
Query: 365 PIYAALRSAFHKRMKKYKKAKGLEDLLD--------TCYDLSAYETVVVPKIAIHFLGGV 416
+ F +K K A E D C+ + P I+++ +G V
Sbjct: 300 ------KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV 353
Query: 417 DLELDVRGTLV----------VASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAG 466
+ R T++ VA+ C FA ++ +G V G V +D A
Sbjct: 354 TNQ-SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRAR 411
Query: 467 RRLGFGPGNC 476
+R+GF C
Sbjct: 412 KRIGFAVSAC 421
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAA 369
+ YTPI + +Y++I+ + + G+ L + + +I+DSG RLP
Sbjct: 195 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP------ 244
Query: 370 LRSAFHKRMKKYKKAKGLEDLLD--------TCYDLSAYETVVVPKIAIHFLGGVDLELD 421
+ F +K K A E D C+ + P I+++ +G V +
Sbjct: 245 -KKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-S 302
Query: 422 VRGTLV----------VASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGF 471
R T++ VA+ C FA ++ +G V G V +D A +R+GF
Sbjct: 303 FRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGF 361
Query: 472 GPGNC 476
C
Sbjct: 362 AVSAC 366
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQR 170
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 12 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQR 61
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 48/264 (18%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
Y + +G Q +++++DTGS W P ++ Q Y+ ++ F
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNVDCQ---VTYSDQTADF--------- 58
Query: 192 CRILRESFPFGNCNSKE--CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLG 249
C+ P G+ S++ PF I Y DGS S G D + G + +L
Sbjct: 59 CKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGF------GGVSIKNQVLA 112
Query: 250 CINNSSGDKSGASGIMGL-----------DRSPVSIITR--TNTSYFSYCLPSPYGSTGY 296
++++S D+ GI+G+ D PV++ + + +S L SP +TG
Sbjct: 113 DVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQ 168
Query: 297 ITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSG 356
I FG D N+K+ + + E I L + V GK + NT ++DSG
Sbjct: 169 IIFGGVD--NAKYSGSLIALPVTSDRELR-ISLGSVEVSGKTI--NTD---NVDVLLDSG 220
Query: 357 NIITRLPPPIYAALRSAFHKRMKK 380
IT L + + AF+ ++ +
Sbjct: 221 TTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 143/403 (35%), Gaps = 97/403 (24%)
Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSD--VTWTQCKPCIHCFQQRDPFFYASKSK 180
N+ YY+ + +G P Q +++L+DTGS P +H + QR
Sbjct: 25 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQL-------- 76
Query: 181 TFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY 240
S++ R LR+ + Y G G TD ++I +G
Sbjct: 77 --------SSTYRDLRKGV------------YVPYTQGKWEGEL-GTDLVSI----PHGP 111
Query: 241 FTRYPFLLGCINNSSG---DKSGASGIMGLDRSPV------------SIITRTNTSYF-- 283
+ I S + S GI+GL + + S++ +T+
Sbjct: 112 NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFS 171
Query: 284 ------------SYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTG 331
S L S GS I G ++ + + YTPI + +Y++I+
Sbjct: 172 LQLCGAGFPLNQSEVLASVGGSM--IIGGIDHSLYTGSLWYTPI----RREWYYEVIIVR 225
Query: 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLL 391
+ + G+ L + + +I+DSG RLP + F +K K A E
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP-------KKVFEAAVKSIKAASSTEKFP 278
Query: 392 D--------TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV----------VASVSQ 433
D C+ + P I+++ +G V + R T++ VA+
Sbjct: 279 DGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILPQQYLRPVEDVATSQD 337
Query: 434 VCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
C FA +G V G V +D A +R+GF C
Sbjct: 338 DCYKFAI-SQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 48/264 (18%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
Y + +G Q +++++DTGS W P ++ Q Y+ ++ F
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWV---PDVNIDCQ---VTYSDQTADF--------- 58
Query: 192 CRILRESFPFGNCNSKE--CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLG 249
C+ P G+ S++ PF+I Y DGS S G D + G + +L
Sbjct: 59 CKQKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGF------GGVSIKNQVLA 112
Query: 250 CINNSSGDKSGASGIMGL-----------DRSPVSIITR--TNTSYFSYCLPSPYGSTGY 296
++++S D+ GI+G+ D PV++ + + +S L SP +TG
Sbjct: 113 DVDSTSIDQ----GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDSATGQ 168
Query: 297 ITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSG 356
I FG D N+K+ + + E I L + V GK + NT ++DSG
Sbjct: 169 IIFGGVD--NAKYSGSLIALPVTSDRELR-ISLGSVEVSGKTI--NTD---NVDVLLDSG 220
Query: 357 NIITRLPPPIYAALRSAFHKRMKK 380
IT L + + AF+ ++ +
Sbjct: 221 TTITYLQQDLADQIIKAFNGKLTQ 244
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 148/391 (37%), Gaps = 68/391 (17%)
Query: 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFK 184
ND ++ + P V +L+D + W ++C QQ Y+SK+ ++
Sbjct: 16 NDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLW------VNCEQQ-----YSSKT---YQ 61
Query: 185 IP-CNSTSCRILRE----SFPFGN---CNSKECPFNIQYADGSGSG-GFWATDRITIQEA 235
P C+ST C S P + C+ C +G G D + I
Sbjct: 62 APFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHAT 121
Query: 236 NSN----GYFTRYP-FLLGCINN---SSGDKSGASGIMGLDRSPVSIITRTNTSY----- 282
+ G P FL C + G G+ GL +P+S+ + + +
Sbjct: 122 QGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQ 181
Query: 283 FSYCLPSPYGSTGYITFGKTDTVNSKF--------IKYTPIVTTSEQSEFYDIILTGISV 334
F+ CL S G I FG +F + +TP+ T + Q E Y++ + I +
Sbjct: 182 FTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPL-TITLQGE-YNVRVNSIRI 239
Query: 335 GGKKL-PFNTSYFTKFGAIIDSGNIITRLP-----PPIYAALRSAFHKRMKKYKKAKGLE 388
+ P N T G+ I T P +Y A F +++ K + K +
Sbjct: 240 NQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVA 299
Query: 389 DLLDTCYD---LSAYETVVV----PKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATY 441
C++ ++AY +V + P + + G DL +V A CLG
Sbjct: 300 PF-GLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDL-------MVQAQPGVTCLGVMNG 351
Query: 442 PPDPNS-ITLGNVQQRGHEVHYDVAGRRLGF 471
P + ITLG Q + V +D+A R+GF
Sbjct: 352 GMQPRAEITLGARQLEENLVVFDLARSRVGF 382
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 109/285 (38%), Gaps = 93/285 (32%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNS- 189
+Y + V +G P SLL+DTGS TW K++ K +S
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------------KSYVKTSTSSA 54
Query: 190 TSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLG 249
TS ++ ++ Y GS SG + TD +T+ G T +G
Sbjct: 55 TSDKV-----------------SVTYGSGSFSGTEY-TDTVTL------GSLTIPKQSIG 90
Query: 250 CINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLP--------------------- 288
+ SG G GI+G+ PV + T + + S +P
Sbjct: 91 VASRDSG-FDGVDGILGV--GPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSF 147
Query: 289 ----SPYGSTGYITFGKTDTVNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLPF 341
S + G +TFG TD +SK+ I YTPI +TS S ++ I + +
Sbjct: 148 EPTTSESSTNGELTFGATD--SSKYTGSITYTPITSTSPASAYWGINQS------IRYGS 199
Query: 342 NTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKG 386
+TS + I+D+G +T + +A KYKKA G
Sbjct: 200 STSILSSTAGIVDTGTTLTLIASDAFA-----------KYKKATG 233
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 135/379 (35%), Gaps = 78/379 (20%)
Query: 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH---CFQQRDPFFYASKSKTFFKIP 186
+EY I V+IG P Q LL DTGS TW K C C R FF S S TF
Sbjct: 18 EEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFKATN 75
Query: 187 CNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP- 245
N NI Y G G+ G + D I I + Y
Sbjct: 76 YN----------------------LNITYGTG-GANGLYFEDSIAIGDITVTKQILAYVD 112
Query: 246 ---------------FLLGCINNSSGDKSGASGIMGLDRSPVSI----ITRTNTSYFSYC 286
FL G + D + G + V + ++ FS
Sbjct: 113 NVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVY 172
Query: 287 LPSPYGSTGYITFGKT-DTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSY 345
+ + G TG + FG +T+ I YT +++ F+D +TGI+V G
Sbjct: 173 MNTNSG-TGEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSA----AVR 227
Query: 346 FTKFGAI-IDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDT---------CY 395
F++ A ID+G +P SA K +K L D +T Y
Sbjct: 228 FSRPQAFTIDTGTNFFIMP-------SSAASKIVK-----AALPDATETQQGWVVPCASY 275
Query: 396 DLSAYETVVVPKIAIHFLGGVDLELDVRGTLV-VASVSQVCLGFATYPPDPNSITLGNVQ 454
S +V + + +++ + V L+ V ++ C+ F P N +GN+
Sbjct: 276 QNSKSTISIVMQKSGSSSDTIEISVPVSKMLLPVDQSNETCM-FIILPDGGNQYIVGNLF 334
Query: 455 QRGHEVHYDVAGRRLGFGP 473
R YD R+GF P
Sbjct: 335 LRFFVNVYDFGNNRIGFAP 353
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 101/267 (37%), Gaps = 57/267 (21%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYAS--KSKTFFKIPCNS 189
Y + IG KQ ++++DTGS W + C + R P A K K + P +S
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVP-DASVTCDKPR-PGQSADFCKGKGIYT-PKSS 70
Query: 190 TSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPF--- 246
T+ + L PF I Y DGS S G D + A+ T+ F
Sbjct: 71 TTSQNLG------------TPFYIGYGDGSSSQGTLYKDTVGFGGAS----ITKQVFADI 114
Query: 247 --------LLGC---INNSSGDKSGASGIMGLDRSPVSIITR--TNTSYFSYCLPSPYGS 293
+LG N ++GD D PV++ + + +S L SP +
Sbjct: 115 TKTSIPQGILGIGYKTNEAAGD---------YDNVPVTLKNQGVIAKNAYSLYLNSPNAA 165
Query: 294 TGYITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAI 352
TG I FG D S + P+ + E I L + GK + N +
Sbjct: 166 TGQIIFGGVDKAKYSGSLIAVPVTSDRE----LRITLNSLKAVGKNINGN------IDVL 215
Query: 353 IDSGNIITRLPPPIYAALRSAFHKRMK 379
+DSG IT L + + AF +K
Sbjct: 216 LDSGTTITYLQQDVAQDIIDAFQAELK 242
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 143/367 (38%), Gaps = 82/367 (22%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
Y+ ++IG P Q +L DTGS W P ++C Q A S + F P S++
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWV---PSVYCQSQ------ACTSHSRFN-PSESST 63
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANS-NGYFTRYPFLLGC 250
++ F++QY GS + GF+ D +T+Q N F G
Sbjct: 64 YSTNGQT------------FSLQYGSGSLT-GFFGYDTLTVQSIQVPNQEF-------GL 103
Query: 251 INNSSGDK---SGASGIMGLDRSPVSIITRT------------NTSYFSYCLPSPYGST- 294
N G + GIMGL +S+ T + FS L + GS+
Sbjct: 104 SENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSG 163
Query: 295 GYITFGKTD-TVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAII 353
G + FG D ++ + I + P+ Q ++ I + +GG+ + + AI+
Sbjct: 164 GAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGGQASGWCSE---GCQAIV 216
Query: 354 DSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFL 413
D+G + +P +AL A + +Y + L C + +P + +
Sbjct: 217 DTGTSLLTVPQQYMSALLQATGAQEDEYGQ------FLVNCNSIQN-----LPSLTF-II 264
Query: 414 GGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSIT---------LGNVQQRGHEVHYDV 464
GV+ L ++ + G+ T +P ++ LG+V R + YD+
Sbjct: 265 NGVEFPLPPSSYILSNN------GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDL 318
Query: 465 AGRRLGF 471
R+GF
Sbjct: 319 GNNRVGF 325
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 130/373 (34%), Gaps = 66/373 (17%)
Query: 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH---CFQQRDPFFYASKSKTFFKIP 186
+EY I V+IG P Q LL DTGS TW K C + C +R FF S S TF +
Sbjct: 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR--FFDPSSSSTFKETD 75
Query: 187 CNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP- 245
N NI Y G G+ G + D IT+ A Y
Sbjct: 76 YN----------------------LNITYGTG-GANGIYFRDSITVGGATVKQQTLAYVD 112
Query: 246 ---------------FLLGCINNSSGDKSGASGIMGLDRSPVSI----ITRTNTSYFSYC 286
FL G + D + G + V + ++ FS
Sbjct: 113 NVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVY 172
Query: 287 LPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYF 346
+ + G + G +T+ I+YT ++ + F+D +TG+ + G S+
Sbjct: 173 MNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDA---VSFD 229
Query: 347 TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYE-TVVV 405
ID+G P S+F +++ K E S Y+ +
Sbjct: 230 GAQAFTIDTGTNFFIAP--------SSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTT 281
Query: 406 PKIAIHFLGGVDLELDV-----RGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEV 460
+ + G +DV + L V + C+ F P N +GN+ R
Sbjct: 282 FSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCM-FIVLPDGGNQFIVGNLFLRFFVN 340
Query: 461 HYDVAGRRLGFGP 473
YD R+GF P
Sbjct: 341 VYDFGKNRIGFAP 353
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 142/372 (38%), Gaps = 84/372 (22%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
EY+ ++IG P Q +++ DTGS W P ++C A K+ + F+ P S+
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWV---PSVYCTSP------ACKTHSRFQ-PSQSS 73
Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGC 250
+ +S F+IQY GS S G D+++++ ++G
Sbjct: 74 TYSQPGQS------------FSIQYGTGSLS-GIIGADQVSVEGLT----------VVGQ 110
Query: 251 INNSSGDKSGAS-------GIMGLDRSPVSIITRT------------NTSYFS-YCLPSP 290
S + G + GI+GL +++ T + FS Y +P
Sbjct: 111 QFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNP 170
Query: 291 YGSTG-YITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
G G + FG D +S F V ++Q+ ++ I L I VGG T F
Sbjct: 171 EGGAGSELIFGGYD--HSHFSGSLNWVPVTKQA-YWQIALDNIQVGG------TVMFCSE 221
Query: 350 G--AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPK 407
G AI+D+G + P ++K+ + A G +D Y + V+P
Sbjct: 222 GCQAIVDTGTSLITGP-----------SDKIKQLQNAIGAAP-VDGEYAVECANLNVMPD 269
Query: 408 IAIHFLGGVDLELDVRGTLVVASVS--QVC----LGFATYPPDPNSITLGNVQQRGHEVH 461
+ + GV L ++ V Q C G +PP LG+V R
Sbjct: 270 VTFT-INGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSV 328
Query: 462 YDVAGRRLGFGP 473
+D R+G P
Sbjct: 329 FDRGNNRVGLAP 340
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFK 184
Y+ + IG P Q +++ DTGS V W CI+ R Y S + +K
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYK 67
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 49/274 (17%)
Query: 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI 185
D++ D Y V IG P Q ++L DTGS W F AS+
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLW--------VFSSETT---ASEVXQTIYT 59
Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP 245
P ST+ ++L + + Y D GG T + ++ A
Sbjct: 60 PSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK-------- 110
Query: 246 FLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYF----SYCLPSP-------YGST 294
+++S + S G++GL S ++ ++ T F L SP Y +
Sbjct: 111 -----VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAP 165
Query: 295 GYITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAII 353
G FG DT + I YT + S + F++ TG +VG T I
Sbjct: 166 GTYNFGFIDTTAYTGSITYTAV---STKQGFWEWTSTGYAVGSGTFK-----STSIDGIA 217
Query: 354 DSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL 387
D+G + LP A + SA+ ++ K + +
Sbjct: 218 DTGTTLLYLP----ATVVSAYWAQVSGAKSSSSV 247
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
EYY V IG P + +L DTGS W C +C R + ++S T+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSRQTKYDPNQSSTY-------- 66
Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI 232
+ ++I Y DGS + G A D + +
Sbjct: 67 --------------QADGRTWSISYGDGSSASGILAKDNVNL 94
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 49/274 (17%)
Query: 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI 185
D++ D Y V IG P Q ++L DTGS W F AS+
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLW--------VFSSETT---ASEVXQTIYT 59
Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP 245
P ST+ ++L + + Y D GG T + ++ A
Sbjct: 60 PSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK-------- 110
Query: 246 FLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYF----SYCLPSP-------YGST 294
+++S + S G++GL S ++ ++ T F L SP Y +
Sbjct: 111 -----VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAP 165
Query: 295 GYITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAII 353
G FG DT + I YT + S + F++ TG +VG T I
Sbjct: 166 GTYNFGFIDTTAYTGSITYTAV---STKQGFWEWTSTGYAVGSGTFK-----STSIDGIA 217
Query: 354 DSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL 387
D+G + LP A + SA+ ++ K + +
Sbjct: 218 DTGTTLLYLP----ATVVSAYWAQVSGAKSSSSV 247
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 105/271 (38%), Gaps = 71/271 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI-----P 186
Y + +G +Q ++++DTGS W C Y+ ++ F K P
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWV-VDTDAEC-----QVTYSGQTNNFCKQEGTFDP 67
Query: 187 CNSTSCRILRESF--PFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRY 244
+S+S + L + F +G+ S + F Y D G GG I+I+
Sbjct: 68 SSSSSAQNLNQDFSIEYGDLTSSQGSF---YKDTVGFGG------ISIKNQQ-------- 110
Query: 245 PFLLGCINNSSGDKSGASGIMGL------------DRSPVSIITR--TNTSYFSYCLPSP 290
+ +S D+ GIMG+ D PV++ + N + +S L S
Sbjct: 111 ---FADVTTTSVDQ----GIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSE 163
Query: 291 YGSTGYITFGKTDTVNSKF---IKYTPIVTTSE-QSEFYDIILTGISV----------GG 336
STG I FG D N+K+ + P+ ++ E + I G SV G
Sbjct: 164 DASTGKIIFGGVD--NAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGT 221
Query: 337 KKLPFNTSYFTKF----GAIIDSGNIITRLP 363
F+ S KF GA DS N I RLP
Sbjct: 222 TITYFSQSTADKFARIVGATWDSRNEIYRLP 252
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 47/194 (24%)
Query: 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFF 183
+ND YY IG+ KQ + + DTGS W C + + ++KSKT+
Sbjct: 15 LNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYE 74
Query: 184 KIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTR 243
K + T + Y G+ S GF++ D +TI +
Sbjct: 75 K---DGTKVE-------------------MNYVSGTVS-GFFSKDIVTIANLS------- 104
Query: 244 YPFLLGCINNSSGDKSGAS-----GIMGLDRSPVSIIT------------RTNTSYFSYC 286
+P+ + +++G + + GI+GL +SI + + + F++
Sbjct: 105 FPYKFIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFY 164
Query: 287 LPSPYGSTGYITFG 300
LP GY+T G
Sbjct: 165 LPFDDKHKGYLTIG 178
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 83 PSLEEILRQ---DQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIG 139
PS+ E L++ D RL + S+ +++ L T + N DT +YY + IG
Sbjct: 17 PSIRESLKERGVDMARLGPEWSQPMKRLT---LGNTTSSVILTNYMDT---QYYGEIGIG 70
Query: 140 EPKQYVSLLLDTGSDVTWTQCKPC 163
P Q ++ DTGS W C
Sbjct: 71 TPPQTFKVVFDTGSSNVWVPSSKC 94
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 119/337 (35%), Gaps = 100/337 (29%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC--IHCFQQRDPFFYASKSKTFFKIPCN 188
+YY + +G P Q ++LDTGS W C + CF Y ++ + +K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK---YDHEASSSYK---- 66
Query: 189 STSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI----------QEANSN 238
N E F IQY GS G+ + D ++I EA S
Sbjct: 67 ---------------ANGTE--FAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSE 108
Query: 239 GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY------------FSYC 286
T F G + GI+GL +S+ Y F++
Sbjct: 109 PGLT---FAFGKFD----------GILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFY 155
Query: 287 LPSPYGST---GYITFGKTDTVNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340
L T G TFG D SKF I + P+ + ++++ GI +G +
Sbjct: 156 LGDTSKDTENGGEATFGGID--ESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE 209
Query: 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL--------EDLLD 392
+ GA ID+G + LP + L + + K + G ++L D
Sbjct: 210 LESH-----GAAIDTGTSLITLP----SGLAEMINAEIGAKKGSTGQYTLDCNTRDNLPD 260
Query: 393 TCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA 429
++ + Y + P D L+V G+ + A
Sbjct: 261 LIFNFNGYNFTIGP---------YDYTLEVSGSCISA 288
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 88 ILRQDQQRLHLKNSRRLR--------KPFPEFLKRTEAFTFPANINDTVADEYYIVVAIG 139
++R+ R +L +L+ P ++ A + + + EY+ + IG
Sbjct: 6 LVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIG 65
Query: 140 EPKQYVSLLLDTGSDVTWTQCKPCIHC 166
P Q +++ DTGS W P ++C
Sbjct: 66 TPAQDFTVIFDTGSSNLWV---PSVYC 89
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 88 ILRQDQQRLHLKNSRRLR--------KPFPEFLKRTEAFTFPANINDTVADEYYIVVAIG 139
++R+ R +L +L+ P ++ A + + + EY+ + IG
Sbjct: 6 LVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIG 65
Query: 140 EPKQYVSLLLDTGSDVTWTQCKPCIHC 166
P Q +++ DTGS W P ++C
Sbjct: 66 TPAQDFTVIFDTGSSNLWV---PSVYC 89
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 98/274 (35%), Gaps = 48/274 (17%)
Query: 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI 185
D++ D Y V IG P Q ++L DTGS W +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIY----------T 60
Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP 245
P ST+ ++L + + Y D GG T + ++ A
Sbjct: 61 PSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK-------- 111
Query: 246 FLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYF----SYCLPSP-------YGST 294
+++S + S G++GL S ++ ++ T F L SP Y +
Sbjct: 112 -----VSSSFTEDSTIDGLLGLAFSTLNTVSPTQXKTFFDNAKASLDSPVFTADLGYHAP 166
Query: 295 GYITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAII 353
G FG DT + I YT + S + F++ TG +VG T I
Sbjct: 167 GTYNFGFIDTTAYTGSITYTAV---STKQGFWEWTSTGYAVGSGTFK-----STSIDGIA 218
Query: 354 DSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL 387
D+G + LP A + SA+ ++ K + +
Sbjct: 219 DTGTTLLYLP----ATVVSAYWAQVSGAKSSSSV 248
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 107 PFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
P PE LK N D +YY + IG P Q +++ DTGS W P IHC
Sbjct: 2 PIPEVLK---------NYMDA---QYYGEIGIGTPPQCFTVVFDTGSSNLWV---PSIHC 46
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EYY V IG P + +L DTGS W C +C
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC 51
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
EYY V++IG P + ++ DTGS W C
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHC 45
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 98/274 (35%), Gaps = 48/274 (17%)
Query: 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI 185
D++ D Y V IG P Q ++L DTGS W +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIY----------T 60
Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYP 245
P ST+ ++L + + Y D GG T + ++ A
Sbjct: 61 PSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKK-------- 111
Query: 246 FLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYF----SYCLPSP-------YGST 294
+++S + S G++GL S ++ ++ T F L SP Y +
Sbjct: 112 -----VSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAP 166
Query: 295 GYITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAII 353
G FG DT + I YT + S + F++ TG +VG T I
Sbjct: 167 GTYNFGFIDTTAYTGSITYTAV---STKQGFWEWTSTGYAVGSGTFK-----STSIDGIA 218
Query: 354 DSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL 387
D+G + LP A + SA+ ++ K + +
Sbjct: 219 DTGTTLLYLP----ATVVSAYWAQVSGAKSSSSV 248
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 119/334 (35%), Gaps = 94/334 (28%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC--IHCFQQRDPFFYASKSKTFFKIPCN 188
+YY + +G P Q ++LDTGS W C + CF Y ++ + +K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK---YDHEASSSYK---- 66
Query: 189 STSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI----------QEANSN 238
N E F IQY GS G+ + D ++I EA S
Sbjct: 67 ---------------ANGTE--FAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSE 108
Query: 239 GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY------------FSYC 286
T F G + GI+GL +S+ Y F++
Sbjct: 109 PGLT---FAFGKFD----------GILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFY 155
Query: 287 LPSPYGST---GYITFGKTDTVNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340
L T G TFG D SKF I + P+ + ++++ GI +G +
Sbjct: 156 LGDTSKDTENGGEATFGGID--ESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE 209
Query: 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-----EDLLDTCY 395
+ GA ID+G + LP + + + + K + L ++L D +
Sbjct: 210 LESH-----GAAIDTGTSLITLPSGLAEMINAEIGAK-KGWTGQYTLDCNTRDNLPDLIF 263
Query: 396 DLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA 429
+ + Y + P D L+V G+ + A
Sbjct: 264 NFNGYNFTIGP---------YDYTLEVSGSCISA 288
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 119/334 (35%), Gaps = 94/334 (28%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC--IHCFQQRDPFFYASKSKTFFKIPCN 188
+YY + +G P Q ++LDTGS W C + CF Y ++ + +K
Sbjct: 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK---YDHEASSSYK---- 66
Query: 189 STSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI----------QEANSN 238
N E F IQY GS G+ + D ++I EA S
Sbjct: 67 ---------------ANGTE--FAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSE 108
Query: 239 GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY------------FSYC 286
T F G + GI+GL +S+ Y F++
Sbjct: 109 PGLT---FAFGKFD----------GILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFY 155
Query: 287 LPSPYGST---GYITFGKTDTVNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340
L T G TFG D SKF I + P+ + ++++ GI +G +
Sbjct: 156 LGDTSKDTENGGEATFGGID--ESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAE 209
Query: 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-----EDLLDTCY 395
+ GA ID+G + LP + + + + K + L ++L D +
Sbjct: 210 LESH-----GAAIDTGTSLITLPSGLAEMINAEIGAK-KGWTGQYTLDCNTRDNLPDLIF 263
Query: 396 DLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA 429
+ + Y + P D L+V G+ + A
Sbjct: 264 NFNGYNFTIGP---------YDYTLEVSGSCISA 288
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC----------FQQRDPFFYASKSK 180
EY+ + IG P Q +++ DTGS W P ++C F D Y S S+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTYQSTSE 69
Query: 181 T 181
T
Sbjct: 70 T 70
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC----------FQQRDPFFYASKSK 180
EY+ + IG P Q +++ DTGS W P ++C F D Y S S+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWV---PSVYCSSLACTNHNRFNPEDSSTYQSTSE 69
Query: 181 T 181
T
Sbjct: 70 T 70
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EY+ + IG P Q +++ DTGS W P ++C
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWV---PSVYC 45
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EY+ + IG P Q +++ DTGS W P ++C
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWV---PSVYC 45
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EY+ + IG P Q +++ DTGS W P ++C
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWV---PSVYC 45
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 121 PANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
P + + + +YY + IG P Q ++ DTGS W C
Sbjct: 6 PVVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKC 48
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EY+ + IG P Q +++ DTGS W P ++C
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWV---PSVYC 45
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC 166
EY+ + IG P Q +++ DTGS W P ++C
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWV---PSVYC 45
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 121 PANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTW 157
P + +D+ EY V+IG P Q + L DTGS W
Sbjct: 6 PNHPSDSADSEYITSVSIGTPAQVLPLDFDTGSSDLW 42
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC---IHCFQQRDPFFYASKSKTFFKIPC 187
+Y+ + +G P Q +++ DTGS W C I C+ + A S T+ K
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSR--YKAGASSTYKK--- 107
Query: 188 NSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI 232
N K P IQY GS G+++ D +T+
Sbjct: 108 -----------------NGK--PAAIQYGTGS-IAGYFSEDSVTV 132
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 112 LKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
L T + N DT +YY + IG P Q ++ DTGS W C
Sbjct: 3 LGNTTSSVILTNYMDT---QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 51
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 112 LKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
L T + N DT +YY + IG P Q ++ DTGS W C
Sbjct: 3 LGNTTSSVILTNYMDT---QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 51
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 112 LKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
L T + N DT +YY + IG P Q ++ DTGS W C
Sbjct: 3 LGNTTSSVILTNYMDT---QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 51
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 112 LKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
L T + N DT +YY + IG P Q ++ DTGS W C
Sbjct: 3 LGNTTSSVILTNYMDT---QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 51
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
+YY + IG P Q ++ DTGS W C
Sbjct: 16 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 48
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
+YY + IG P Q ++ DTGS W C
Sbjct: 15 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 47
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 74
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 75 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 114
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIIT------------RTNTSYFSYCLPS 289
Y S GI+GL +SI + + + F++ LP
Sbjct: 115 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 162
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 163 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNISLE-------KA 211
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 212 NCIVDSGTSAITVP 225
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 67 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 123
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 124 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 163
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIIT------------RTNTSYFSYCLPS 289
Y S GI+GL +SI + + + F++ LP
Sbjct: 164 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 211
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 212 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNIMLE-------KA 260
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 261 NCIVDSGTSAITVP 274
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163
+YY + IG P Q ++ DTGS W C
Sbjct: 12 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 44
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 89/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 140 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 196
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 197 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 236
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSI------------ITRTNTSYFSYCLPS 289
Y S GI+GL +SI + + F++ LP
Sbjct: 237 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 284
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 285 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNIMLE-------KA 333
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 334 NCIVDSGTSAITVP 347
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 72
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 73 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 112
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIIT------------RTNTSYFSYCLPS 289
Y S GI+GL +SI + + + F++ LP
Sbjct: 113 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 160
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 161 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNISLE-------KA 209
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 210 NCIVDSGTSAITVP 223
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 18 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 74
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 75 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 114
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIIT------------RTNTSYFSYCLPS 289
Y S GI+GL +SI + + + F++ LP
Sbjct: 115 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 162
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 163 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNIMLE-------KA 211
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 212 NCIVDSGTSAITVP 225
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 68/254 (26%)
Query: 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTS 191
+Y +G+ +Q + +LDTGS W C + +SKS+T+ K + T
Sbjct: 16 FYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK---DGTK 72
Query: 192 CRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRIT----------IQEANSNGYF 241
+ Y G+ S GF++ D +T I+ ++NG+
Sbjct: 73 VE-------------------MNYVSGTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFE 112
Query: 242 TRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIIT------------RTNTSYFSYCLPS 289
Y S GI+GL +SI + + + F++ LP
Sbjct: 113 PTYT------------ASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV 160
Query: 290 PYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKF 349
TG++T G + +F + P+ + Y I VG L K
Sbjct: 161 HDKHTGFLTIGG---IEERFYE-GPLTYEKLNHDLYWQITLDAHVGNIMLE-------KA 209
Query: 350 GAIIDSGNIITRLP 363
I+DSG +P
Sbjct: 210 NCIVDSGTSAITVP 223
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
+Y+ + IG P Q +++ DTGS W P I+C KS C +
Sbjct: 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWV---PSIYC-----------KSNV-----CKNH 52
Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI 232
R+S F N P +I Y GS GF D +T+
Sbjct: 53 HRFDPRKSSTFRNLGK---PLSIHYGTGSME-GFLGYDTVTV 90
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQ-QRDPFFYASKSKTFFKIPC 187
D YY+ + P+Q + TG W + ++ Q Q + FYASK T K+P
Sbjct: 376 DAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVPMNPEQYQVEQVFYASKDGT--KVPM 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,659,441
Number of Sequences: 62578
Number of extensions: 617423
Number of successful extensions: 1432
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 167
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)