Query 011804
Match_columns 477
No_of_seqs 360 out of 1779
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.1E-76 1.5E-80 611.9 40.8 394 58-477 23-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 7.9E-60 1.7E-64 488.2 37.3 342 122-477 37-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 2.3E-58 5E-63 460.2 31.4 294 131-476 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 4.3E-58 9.3E-63 468.4 31.5 321 138-474 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.1E-55 1.8E-59 439.8 30.2 299 130-477 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 9.4E-55 2E-59 437.7 29.5 298 124-473 3-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 5.7E-54 1.2E-58 433.5 30.4 296 127-473 2-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 2E-53 4.3E-58 446.1 31.0 307 120-477 109-449 (482)
9 cd05477 gastricsin Gastricsins 100.0 3.9E-53 8.5E-58 426.1 30.5 293 130-474 2-318 (318)
10 cd05486 Cathespin_E Cathepsin 100.0 2.1E-53 4.5E-58 427.8 27.6 290 132-473 1-316 (316)
11 cd05488 Proteinase_A_fungi Fun 100.0 5.6E-53 1.2E-57 425.4 29.9 295 125-473 4-320 (320)
12 cd05473 beta_secretase_like Be 100.0 2.1E-52 4.6E-57 428.4 29.4 312 130-477 2-348 (364)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.5E-52 7.6E-57 421.0 29.9 299 123-473 3-329 (329)
14 cd05487 renin_like Renin stimu 100.0 4.3E-52 9.3E-57 420.0 30.1 296 126-474 3-326 (326)
15 cd06098 phytepsin Phytepsin, a 100.0 1E-51 2.2E-56 415.6 30.4 288 124-473 3-317 (317)
16 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-51 8.3E-56 425.8 31.7 299 123-475 131-450 (453)
17 cd05475 nucellin_like Nucellin 100.0 6.7E-51 1.5E-55 401.3 28.1 258 130-476 1-273 (273)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.1E-50 1.1E-54 416.6 31.0 296 124-475 131-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 8.8E-50 1.9E-54 391.7 27.8 253 131-476 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 5.1E-48 1.1E-52 381.8 25.9 261 132-473 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 5.1E-47 1.1E-51 377.3 26.9 269 131-474 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-45 3.2E-50 369.8 19.8 294 131-474 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2E-44 4.4E-49 355.3 26.3 264 132-473 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.7E-33 8E-38 254.0 12.0 159 132-301 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 1.3E-28 2.8E-33 223.6 16.8 149 324-473 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.1E-23 4.6E-28 176.6 11.3 105 134-267 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.8 8.7E-05 1.9E-09 60.4 7.0 94 130-269 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.8 0.041 8.8E-07 47.3 7.5 96 128-269 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 94.4 0.23 4.9E-06 39.4 7.8 89 134-268 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.27 6E-06 42.3 7.8 103 332-471 21-124 (124)
31 cd05484 retropepsin_like_LTR_2 90.3 0.32 6.9E-06 39.2 3.4 29 132-162 1-29 (91)
32 cd05479 RP_DDI RP_DDI; retrope 90.1 1.5 3.1E-05 37.7 7.6 30 130-161 15-44 (124)
33 TIGR03698 clan_AA_DTGF clan AA 88.0 3.2 7E-05 34.7 8.1 24 446-469 84-107 (107)
34 TIGR02281 clan_AA_DTGA clan AA 83.8 2.7 5.9E-05 36.0 5.7 36 322-370 9-44 (121)
35 PF13975 gag-asp_proteas: gag- 83.2 1.9 4.2E-05 33.1 4.1 32 130-163 7-38 (72)
36 PF13650 Asp_protease_2: Aspar 80.6 2.3 5E-05 33.4 3.9 29 332-370 3-31 (90)
37 PF00077 RVP: Retroviral aspar 80.4 2.4 5.3E-05 34.5 4.0 28 133-162 7-34 (100)
38 PF08284 RVP_2: Retroviral asp 78.4 8 0.00017 33.8 6.8 28 447-474 105-132 (135)
39 cd05484 retropepsin_like_LTR_2 75.8 4.2 9.1E-05 32.6 4.0 29 332-370 5-33 (91)
40 cd05483 retropepsin_like_bacte 73.1 7.1 0.00015 30.9 4.8 30 331-370 6-35 (96)
41 PF13975 gag-asp_proteas: gag- 72.9 6.2 0.00013 30.3 4.1 29 332-370 13-41 (72)
42 cd05482 HIV_retropepsin_like R 67.4 6.3 0.00014 31.7 3.2 25 135-161 2-26 (87)
43 cd06095 RP_RTVL_H_like Retrope 63.4 10 0.00023 30.0 3.8 29 332-370 3-31 (86)
44 cd06095 RP_RTVL_H_like Retrope 62.0 9.6 0.00021 30.3 3.3 25 135-161 2-26 (86)
45 COG3577 Predicted aspartyl pro 60.7 18 0.00038 33.9 5.1 73 128-236 102-174 (215)
46 PF00077 RVP: Retroviral aspar 56.4 9.8 0.00021 30.8 2.6 26 331-366 9-34 (100)
47 PF11925 DUF3443: Protein of u 54.2 1.4E+02 0.003 30.6 10.7 126 213-363 82-270 (370)
48 cd05481 retropepsin_like_LTR_1 48.8 21 0.00046 28.9 3.3 21 351-371 13-33 (93)
49 PF09668 Asp_protease: Asparty 42.2 35 0.00076 29.4 3.8 29 332-370 29-57 (124)
50 COG5550 Predicted aspartyl pro 41.1 77 0.0017 27.3 5.6 33 437-469 85-117 (125)
51 COG3577 Predicted aspartyl pro 38.4 73 0.0016 29.9 5.5 35 322-369 103-137 (215)
52 PF12384 Peptidase_A2B: Ty3 tr 36.0 47 0.001 30.1 3.7 29 133-161 34-62 (177)
53 PTZ00459 mucin-associated surf 32.3 23 0.0005 35.3 1.3 21 1-21 1-21 (291)
54 PF08139 LPAM_1: Prokaryotic m 29.5 69 0.0015 19.5 2.5 15 2-16 5-19 (25)
55 PF02160 Peptidase_A3: Caulifl 28.6 2.5E+02 0.0055 26.3 7.4 28 445-473 90-117 (201)
56 PF09668 Asp_protease: Asparty 28.1 98 0.0021 26.7 4.3 29 130-160 23-51 (124)
57 PF07438 DUF1514: Protein of u 27.5 48 0.001 24.9 1.9 18 1-18 1-18 (66)
58 cd05470 pepsin_retropepsin_lik 23.0 47 0.001 27.0 1.4 16 351-366 14-29 (109)
59 cd06098 phytepsin Phytepsin, a 23.0 82 0.0018 31.4 3.4 33 322-365 8-40 (317)
60 cd05474 SAP_like SAPs, pepsin- 21.7 85 0.0018 30.6 3.2 25 331-363 6-30 (295)
61 PTZ00165 aspartyl protease; Pr 21.2 1E+02 0.0022 33.0 3.9 43 312-367 110-152 (482)
62 cd05490 Cathepsin_D2 Cathepsin 20.9 95 0.0021 30.9 3.4 33 322-365 4-36 (325)
63 cd05488 Proteinase_A_fungi Fun 20.0 1.1E+02 0.0023 30.6 3.5 33 322-365 8-40 (320)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.1e-76 Score=611.86 Aligned_cols=394 Identities=30% Similarity=0.558 Sum_probs=325.6
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhcccccCCCCccccCCcceeeeeccCCCCC-ceEEEEE
Q 011804 58 DKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVA-DEYYIVV 136 (477)
Q Consensus 58 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~d~~R~~~~~~~r~~~~~~~~~~~~~~~~~p~~~~~~~~-~~Y~~~v 136 (477)
++++++|+||++||+|+.+.+.+..+.++++++|+++|++++.+ +... ..|+..+...+ ++|+++|
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~------------~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS------------PNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc------------CCccccCcccCCccEEEEE
Confidence 57999999999999998644444567788999999999988865 3211 12333333344 8999999
Q ss_pred EECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCC-CCCCcceec
Q 011804 137 AIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNS-KECPFNIQY 215 (477)
Q Consensus 137 ~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~-~~c~y~~~Y 215 (477)
+||||+|++.|+|||||+++||||++|..|+.|.++.|||++|+||+.++|+++.|..+... ..|.. +.|.|.+.|
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~---~~c~~~~~c~y~i~Y 166 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ---ASCSDENTCTYSYSY 166 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC---CCCCCCCCCeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999876531 24754 569999999
Q ss_pred CCCCeEeEeEEEEEEEEcccCCC-ceeeecCeEEEEEecCCCCCC-CCCceeecCCCCccceeeccccc---eEEecCCC
Q 011804 216 ADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKS-GASGIMGLDRSPVSIITRTNTSY---FSYCLPSP 290 (477)
Q Consensus 216 gdgs~~~G~~~~Dtltl~~~~~~-~~v~~~~~~fG~~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~---FS~cL~~~ 290 (477)
+||+.+.|++++|+|+|++..++ ..++ ++.|||++++.+.|. ..+||||||++++|+++|+.... |||||++.
T Consensus 167 gdgs~~~G~l~~Dtltlg~~~~~~~~v~--~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~ 244 (431)
T PLN03146 167 GDGSFTKGNLAVETLTIGSTSGRPVSFP--GIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL 244 (431)
T ss_pred CCCCceeeEEEEEEEEeccCCCCcceeC--CEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence 99998899999999999875321 2467 999999999988775 58999999999999999987543 99999763
Q ss_pred C---CCcceEEeccccccCCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCccc---CCCEEEeccccceeccH
Q 011804 291 Y---GSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFT---KFGAIIDSGNIITRLPP 364 (477)
Q Consensus 291 ~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~---~g~~iiDSGT~~t~LP~ 364 (477)
. ...|.|+||+........+.||||+.+.. +.+|+|.|++|+||+++++++...|. .+++||||||++|+||+
T Consensus 245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred CCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 2 24799999995322234589999986432 57999999999999999998877652 35899999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEEEecCCC
Q 011804 365 PIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPD 444 (477)
Q Consensus 365 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~ 444 (477)
++|++|+++|.+.+...+..... ..+++||+... ...+|+|+|+| +|+++.|++++|+++...+..|+++...
T Consensus 324 ~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~--- 396 (431)
T PLN03146 324 DFYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMIPT--- 396 (431)
T ss_pred HHHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEecC---
Confidence 99999999999988653333333 45789998542 25799999999 5899999999999988767899998865
Q ss_pred CCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 445 PNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 445 ~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
.+.||||+.|||++||+||++++||||++.+|+
T Consensus 397 ~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 397 SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 235999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-60 Score=488.18 Aligned_cols=342 Identities=36% Similarity=0.671 Sum_probs=286.3
Q ss_pred eccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC-CccCCCCCCccCCCCCccceecCCCccccccccCCC
Q 011804 122 ANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI-HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFP 200 (477)
Q Consensus 122 ~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~ 200 (477)
.....+.+++|+++|.||||+|.|.|++||||+++||+|.+|. .|+.+.++.|||++||||+.+.|.++.|......
T Consensus 37 ~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-- 114 (398)
T KOG1339|consen 37 ESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-- 114 (398)
T ss_pred cccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC--
Confidence 3333344589999999999999999999999999999999999 7998777779999999999999999999988631
Q ss_pred CCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccceee
Q 011804 201 FGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSIITR 277 (477)
Q Consensus 201 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ 277 (477)
.|.+..|.|.+.|+||+.++|++++|+|+|++.+ ...++ ++.|||+..+.+. . .+.+||||||++++|+.+|
T Consensus 115 --~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~--~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q 189 (398)
T KOG1339|consen 115 --CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVP--NQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQ 189 (398)
T ss_pred --cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccc--cEEEEeeecCccccccccccceEeecCCCCccceee
Confidence 3336889999999998789999999999999842 11355 8999999999763 2 3689999999999999999
Q ss_pred ccccc-----eEEecCCCCC---CcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccC
Q 011804 278 TNTSY-----FSYCLPSPYG---STGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTK 348 (477)
Q Consensus 278 ~~~~~-----FS~cL~~~~~---~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~ 348 (477)
+...+ |||||.+... .+|.|+||+.|+. +.+.+.||||+.++. .+|.|.|.+|+||++. +++...|..
T Consensus 190 ~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~ 266 (398)
T KOG1339|consen 190 LPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCT 266 (398)
T ss_pred cccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEec
Confidence 99877 9999998753 4799999999976 777899999999653 6999999999999987 666666654
Q ss_pred --CCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeE
Q 011804 349 --FGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL 426 (477)
Q Consensus 349 --g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l 426 (477)
+++||||||++|+||+++|++|.++|.+.+.. ....+ ..+..||...... ..+|.|+|+|.+|+.+.|++++|+
T Consensus 267 ~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~--~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~ 342 (398)
T KOG1339|consen 267 DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDG--EYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYL 342 (398)
T ss_pred CCCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCC--ceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceE
Confidence 68999999999999999999999999986310 11111 3456888766443 569999999966999999999999
Q ss_pred EEeCCCeE-EEEEEecCCCCCeeeechhhhcceEEEEECC-CCEEEEee--CCCC
Q 011804 427 VVASVSQV-CLGFATYPPDPNSITLGNVQQRGHEVHYDVA-GRRLGFGP--GNCS 477 (477)
Q Consensus 427 ~~~~~~~~-Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~-~~rIGFa~--~~C~ 477 (477)
++...... |+++.........||||+.|||+++++||.. ++||||++ ..|+
T Consensus 343 ~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCCCceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 98865444 9977765333368999999999999999999 99999999 7784
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.3e-58 Score=460.24 Aligned_cols=294 Identities=46% Similarity=0.868 Sum_probs=253.2
Q ss_pred eEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCC
Q 011804 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (477)
Q Consensus 131 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (477)
+|+++|.||||||++.|+|||||+++||+|.+| |.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------------~~ 35 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------------CL 35 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------------Ce
Confidence 699999999999999999999999999998765 36
Q ss_pred cceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCCCCccceeecccc---ceEEec
Q 011804 211 FNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTS---YFSYCL 287 (477)
Q Consensus 211 y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~---~FS~cL 287 (477)
|.++|+||+.++|++++|+|+|++.. .++ ++.|||+....+.+...+||||||+..+++++|+... .||+||
T Consensus 36 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~---~~~--~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L 110 (299)
T cd05472 36 YQVSYGDGSYTTGDLATDTLTLGSSD---VVP--GFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCL 110 (299)
T ss_pred eeeEeCCCceEEEEEEEEEEEeCCCC---ccC--CEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEc
Confidence 89999999878999999999998762 377 9999999998877778999999999999999998764 299999
Q ss_pred CCCC-CCcceEEeccccccCCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 288 PSPY-GSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 288 ~~~~-~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
++.. ...|+|+|||+|+. .+++.|+|++.++..+.+|.|+|++|+||++.+.+++.....+++||||||++++||+++
T Consensus 111 ~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~ 189 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSA 189 (299)
T ss_pred cCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHH
Confidence 8754 45799999999977 889999999986655679999999999999998765433334689999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEe-CCCeEEEEEEecCCCC
Q 011804 367 YAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA-SVSQVCLGFATYPPDP 445 (477)
Q Consensus 367 y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~-~~~~~Cl~~~~~~~~~ 445 (477)
|++|.+++.+.+...+...+. ..++.||+.++.....+|+|+|+|++|+++.|++++|+++. ..+..|++|...+...
T Consensus 190 ~~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~ 268 (299)
T cd05472 190 YAALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDG 268 (299)
T ss_pred HHHHHHHHHHHhccCCCCCCC-CCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCC
Confidence 999999999876544333333 45678998887766789999999966899999999999843 4567899888664345
Q ss_pred CeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011804 446 NSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476 (477)
Q Consensus 446 ~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C 476 (477)
+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 269 ~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 269 GLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 6799999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.3e-58 Score=468.41 Aligned_cols=321 Identities=26% Similarity=0.468 Sum_probs=263.0
Q ss_pred ECCCCcE-EEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCC--------CCCCCCCCC
Q 011804 138 IGEPKQY-VSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESF--------PFGNCNSKE 208 (477)
Q Consensus 138 iGtP~q~-~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~--------~~~~C~~~~ 208 (477)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|+....+. +...|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888777 999999999999999975 35889999999999998764321 112676677
Q ss_pred CCccee-cCCCCeEeEeEEEEEEEEcccCCCc----eeeecCeEEEEEecCC--CCCCCCCceeecCCCCccceeecccc
Q 011804 209 CPFNIQ-YADGSGSGGFWATDRITIQEANSNG----YFTRYPFLLGCINNSS--GDKSGASGIMGLDRSPVSIITRTNTS 281 (477)
Q Consensus 209 c~y~~~-Ygdgs~~~G~~~~Dtltl~~~~~~~----~v~~~~~~fG~~~~~~--g~~~~~~GilGLg~~~~Sl~sQ~~~~ 281 (477)
|.|... |++|+.+.|++++|+|+|+..+++. .++ ++.|||++++. +.+..++||||||++++|+++|+...
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~--~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIF--NFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeC--CEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 999765 8899889999999999998654332 467 99999999874 44557899999999999999998764
Q ss_pred c-----eEEecCCCCCCcceEEecccccc-C------CCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCccc--
Q 011804 282 Y-----FSYCLPSPYGSTGYITFGKTDTV-N------SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFT-- 347 (477)
Q Consensus 282 ~-----FS~cL~~~~~~~G~L~fGg~d~~-~------~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~-- 347 (477)
+ |||||++..+..|.|+||+.+.. + .+.+.||||+.++..+.+|+|+|++|+||++++++++..+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 2 99999976555899999998753 2 37899999998765567999999999999999988765442
Q ss_pred ---CCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCC----cccccCeEEEEEcC-CcEEE
Q 011804 348 ---KFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAY----ETVVVPKIAIHFLG-GVDLE 419 (477)
Q Consensus 348 ---~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~----~~~~~P~i~~~f~g-g~~~~ 419 (477)
.+++||||||++|+||+++|++|+++|.+++...+........++.||+.... ....+|+|+|+|+| |+++.
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 25899999999999999999999999999876544332221334899986532 24689999999976 79999
Q ss_pred EcCCCeEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 420 LDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 420 l~~~~~l~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
|++++|+++...+..|++|...+.. .+.||||+.|||++|++||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999998767899999876432 457999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.1e-55 Score=439.81 Aligned_cols=299 Identities=26% Similarity=0.466 Sum_probs=246.1
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
+.|+++|+||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+|++.++|++..|... ..|.++.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~------~~~~~~~~ 75 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC------LSCLNNKC 75 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc------CcCCCCcC
Confidence 589999999999999999999999999999999999988888999999999999999999999532 26777789
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCc-eeeecCeEEEEEecCCCCCC--CCCceeecCCCCccce--------eec
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNG-YFTRYPFLLGCINNSSGDKS--GASGIMGLDRSPVSII--------TRT 278 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~-~v~~~~~~fG~~~~~~g~~~--~~~GilGLg~~~~Sl~--------sQ~ 278 (477)
.|.+.|+||+.+.|.+++|+|+|++..... .....++.|||+....+.|. ..+||||||+...+-. .|.
T Consensus 76 ~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 76 EYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred cEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhc
Confidence 999999999889999999999998764110 00112578999998877553 6899999999875321 221
Q ss_pred c-c---cceEEecCCCCCCcceEEecccccc-CC----------CCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCC
Q 011804 279 N-T---SYFSYCLPSPYGSTGYITFGKTDTV-NS----------KFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNT 343 (477)
Q Consensus 279 ~-~---~~FS~cL~~~~~~~G~L~fGg~d~~-~~----------~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~ 343 (477)
. . ..||+||++. .|.|+||++|+. +. +++.|+|+.. ..+|.|.+++|+|+++......
T Consensus 156 ~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~~ 228 (326)
T cd06096 156 PKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSGN 228 (326)
T ss_pred ccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccceec
Confidence 1 1 2299999964 699999999975 44 7899999987 5789999999999998611111
Q ss_pred CcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCC
Q 011804 344 SYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVR 423 (477)
Q Consensus 344 ~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 423 (477)
.....+||||||++++||+++|++|.+++ |+|+|+|++|+++.++|+
T Consensus 229 --~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~~i~p~ 275 (326)
T cd06096 229 --TKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKIDWKPS 275 (326)
T ss_pred --ccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEEEECHH
Confidence 12247999999999999999999987765 789999966899999999
Q ss_pred CeEEEeCCCeEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 424 GTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 424 ~~l~~~~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+|++.......|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 276 ~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 276 SYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999886544455566543 357999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.4e-55 Score=437.71 Aligned_cols=298 Identities=21% Similarity=0.372 Sum_probs=249.4
Q ss_pred cCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCC
Q 011804 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGN 203 (477)
Q Consensus 124 ~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 203 (477)
+.++.+..|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC-----------------
Confidence 345667999999999999999999999999999999999986433556899999999998752
Q ss_pred CCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCcc------c
Q 011804 204 CNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVS------I 274 (477)
Q Consensus 204 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~S------l 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+.+ ...+||||||++.++ +
T Consensus 66 -----~~~~~~yg~gs-~~G~~~~D~v~ig~~~----i~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 133 (317)
T cd05478 66 -----QPLSIQYGTGS-MTGILGYDTVQVGGIS----DT--NQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPV 133 (317)
T ss_pred -----cEEEEEECCce-EEEEEeeeEEEECCEE----EC--CEEEEEEEecCccccccccccceeeeccchhcccCCCCH
Confidence 68999999997 7999999999999865 78 99999999877643 258999999987654 4
Q ss_pred eeecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCccc
Q 011804 275 ITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFT 347 (477)
Q Consensus 275 ~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~ 347 (477)
+.|+..+ .||+||.+.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++.+....
T Consensus 134 ~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~---- 205 (317)
T cd05478 134 FDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSG---- 205 (317)
T ss_pred HHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCC----
Confidence 4444332 299999987656799999999976 789999999976 6899999999999999876432
Q ss_pred CCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEE
Q 011804 348 KFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV 427 (477)
Q Consensus 348 ~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~ 427 (477)
...+||||||++++||+++|++|.+++.+.. . .. .+|.++|.....+|.|+|+| +|+++.|++++|+.
T Consensus 206 ~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~---~-~~-------~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~ 273 (317)
T cd05478 206 GCQAIVDTGTSLLVGPSSDIANIQSDIGASQ---N-QN-------GEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYIL 273 (317)
T ss_pred CCEEEECCCchhhhCCHHHHHHHHHHhCCcc---c-cC-------CcEEeCCcCcccCCcEEEEE-CCEEEEECHHHhee
Confidence 1369999999999999999999999886531 1 11 23677777666899999999 78999999999997
Q ss_pred EeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 428 VASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 428 ~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
+. ...|+ +|+..+ ..+.||||++|||++|++||++++|||||+
T Consensus 274 ~~--~~~C~~~~~~~~-~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 274 QD--QGSCTSGFQSMG-LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cC--CCEEeEEEEeCC-CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 65 67898 576653 346799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.7e-54 Score=433.50 Aligned_cols=296 Identities=25% Similarity=0.403 Sum_probs=242.1
Q ss_pred CCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC----CccCCCCCCccCCCCCccceecCCCccccccccCCCCC
Q 011804 127 TVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (477)
Q Consensus 127 ~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 202 (477)
+.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+..
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~--~~~y~~~~SsT~~~~----------------- 62 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWL--HHKYNSSKSSTYVKN----------------- 62 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccC--cCcCCcccCcceeeC-----------------
Confidence 45689999999999999999999999999999999997 3654 479999999999862
Q ss_pred CCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCcccee---
Q 011804 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSIIT--- 276 (477)
Q Consensus 203 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~Sl~s--- 276 (477)
+ |.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++.++...
T Consensus 63 ~-----~~~~i~Yg~G~-~~G~~~~D~v~~g~~~----~~--~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 130 (325)
T cd05490 63 G-----TEFAIQYGSGS-LSGYLSQDTVSIGGLQ----VE--GQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTP 130 (325)
T ss_pred C-----cEEEEEECCcE-EEEEEeeeEEEECCEE----Ec--CEEEEEEeeccCCcccceeeeEEEecCCccccccCCCC
Confidence 1 78999999996 7999999999999875 78 999999988765 23 267999999998776432
Q ss_pred ---ecccc------ceEEecCCCCC--CcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCC
Q 011804 277 ---RTNTS------YFSYCLPSPYG--STGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTS 344 (477)
Q Consensus 277 ---Q~~~~------~FS~cL~~~~~--~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~ 344 (477)
|+..+ .||+||++... ..|.|+|||+|+. +.+++.|+|+.. ..+|.|+|++|+||++......
T Consensus 131 ~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~- 205 (325)
T cd05490 131 VFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKG- 205 (325)
T ss_pred HHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCC-
Confidence 33322 29999986432 3799999999976 789999999976 6799999999999987433211
Q ss_pred cccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCC
Q 011804 345 YFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRG 424 (477)
Q Consensus 345 ~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 424 (477)
...+||||||+++++|++++++|.+++.+. +...+ +|.++|.....+|+|+|+| ||+++.|++++
T Consensus 206 ---~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~-------~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~ 270 (325)
T cd05490 206 ---GCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG-------EYMIDCEKIPTLPVISFSL-GGKVYPLTGED 270 (325)
T ss_pred ---CCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC-------CEEecccccccCCCEEEEE-CCEEEEEChHH
Confidence 146999999999999999999999988642 22222 2666777667899999999 78999999999
Q ss_pred eEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 425 TLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 425 ~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
|+++.. ....|+ +|.... ...+.||||++|||++|+|||++++|||||+
T Consensus 271 y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 271 YILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 998753 345898 676532 2345799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2e-53 Score=446.08 Aligned_cols=307 Identities=20% Similarity=0.348 Sum_probs=247.5
Q ss_pred eeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCC
Q 011804 120 FPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESF 199 (477)
Q Consensus 120 ~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~ 199 (477)
.+..+.++.+.+|+++|+||||||+|.|+|||||+++||+|..|..|..+.++.|||++||||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC----------
Confidence 4556677888999999999999999999999999999999999986222445899999999999853211
Q ss_pred CCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CCC--CCCceeecCCCCccc--
Q 011804 200 PFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DKS--GASGIMGLDRSPVSI-- 274 (477)
Q Consensus 200 ~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~~--~~~GilGLg~~~~Sl-- 274 (477)
....+.++||+|+ ..|.+++|+|+|++.. ++ ++.|||++...+ .|. .+|||||||++.++.
T Consensus 179 -------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~----i~--~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 179 -------ESAETYIQYGTGE-CVLALGKDTVKIGGLK----VK--HQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred -------ccceEEEEeCCCc-EEEEEEEEEEEECCEE----Ec--cEEEEEEEeccccccccccccceeecCCCcccccc
Confidence 0024679999997 7899999999998875 88 999999998755 343 689999999987632
Q ss_pred -------eeecccc------ceEEecCCCCCCcceEEecccccc-C--CCCeeEeecccCCCCCeeEEEEEEEEEECCEE
Q 011804 275 -------ITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-N--SKFIKYTPIVTTSEQSEFYDIILTGISVGGKK 338 (477)
Q Consensus 275 -------~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~--~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~ 338 (477)
+.|+..+ .||+||++....+|.|+|||+|+. + .+++.|+|+.. ..+|.|.+++|+||++.
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~ 320 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKS 320 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEE
Confidence 2233322 299999876556899999999976 3 46899999987 67999999999999988
Q ss_pred eecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCc--
Q 011804 339 LPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGV-- 416 (477)
Q Consensus 339 l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~-- 416 (477)
+...... ..+|+||||+++++|++++++|.+++.+. ..|. ....+|+|+|+| +|.
T Consensus 321 ~~~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~-----~~~~lP~itf~f-~g~~g 377 (482)
T PTZ00165 321 LGFCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCS-----NKDSLPRISFVL-EDVNG 377 (482)
T ss_pred eeecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------cccc-----ccccCCceEEEE-CCCCC
Confidence 7653222 35999999999999999999998887431 1354 345789999999 443
Q ss_pred ---EEEEcCCCeEEEe----CCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 417 ---DLELDVRGTLVVA----SVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 417 ---~~~l~~~~~l~~~----~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
++.|+|++|+++. ..+..|+ +|...+ ..++.||||++|||+||++||.+++|||||+++|+
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 8999999999874 2456897 888653 23467999999999999999999999999999984
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.9e-53 Score=426.12 Aligned_cols=293 Identities=23% Similarity=0.409 Sum_probs=244.5
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
..|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+...
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~--~~~f~~~~SsT~~~~~--------------------- 58 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN--HTKFNPSQSSTYSTNG--------------------- 58 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc--cCCCCcccCCCceECC---------------------
Confidence 689999999999999999999999999999999985 754 5899999999998742
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCc------cceeec
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPV------SIITRT 278 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~------Sl~sQ~ 278 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. | ...+||||||++.. ++++|+
T Consensus 59 -~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~----i~--~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L 130 (318)
T cd05477 59 -ETFSLQYGSGS-LTGIFGYDTVTVQGII----IT--NQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGM 130 (318)
T ss_pred -cEEEEEECCcE-EEEEEEeeEEEECCEE----Ec--CEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHH
Confidence 78999999997 7999999999998765 78 9999999987652 2 36799999998644 445555
Q ss_pred cccc------eEEecCCCC-CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 279 NTSY------FSYCLPSPY-GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 279 ~~~~------FS~cL~~~~-~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
..+. ||+||++.. ...|.|+|||+|+. +.+++.|+|+.. ..+|.|++++|+|+++++.+.... ..
T Consensus 131 ~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~---~~ 203 (318)
T cd05477 131 MQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG---CQ 203 (318)
T ss_pred HhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---ce
Confidence 4432 999998753 24699999999976 788999999976 679999999999999987643221 36
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS 430 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~ 430 (477)
+||||||++++||+++|++|++++.+.. ... .+|.++|.....+|.|+|+| +|+++.|++++|+...
T Consensus 204 ~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~~~-------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 204 AIVDTGTSLLTAPQQVMSTLMQSIGAQQ----DQY-------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred eeECCCCccEECCHHHHHHHHHHhCCcc----ccC-------CCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 9999999999999999999999986542 111 24777787777899999999 7899999999999875
Q ss_pred CCeEEE-EEEecC----CCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 431 VSQVCL-GFATYP----PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 431 ~~~~Cl-~~~~~~----~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
...|+ +|.+.. ...+.||||+.|||++|++||++++|||||++
T Consensus 271 -~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 -NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred -CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 56897 887531 12347999999999999999999999999985
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.1e-53 Score=427.78 Aligned_cols=290 Identities=24% Similarity=0.420 Sum_probs=239.5
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
|+++|+||||+|+++|+|||||+++||+|..|.. |.. ++.|||++|+|++... |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~--~~~y~~~~SsT~~~~~----------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK--HNRFQPSESSTYVSNG----------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc--cceECCCCCcccccCC----------------------c
Confidence 8999999999999999999999999999999974 754 4799999999998742 7
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCccc----------ee
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSI----------IT 276 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~Sl----------~s 276 (477)
.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||+....+ .| ...+||||||++.++. .+
T Consensus 57 ~~~i~Yg~g~-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~ 129 (316)
T cd05486 57 AFSIQYGTGS-LTGIIGIDQVTVEGIT----VQ--NQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA 129 (316)
T ss_pred EEEEEeCCcE-EEEEeeecEEEECCEE----Ec--CEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh
Confidence 8999999996 8999999999998765 78 999999987765 23 2689999999987663 23
Q ss_pred ecccc--ceEEecCCCC--CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCE
Q 011804 277 RTNTS--YFSYCLPSPY--GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGA 351 (477)
Q Consensus 277 Q~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~ 351 (477)
|.... .||+||.+.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|.|++|+||++.+..+.. ..+
T Consensus 130 qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~a 201 (316)
T cd05486 130 QNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQA 201 (316)
T ss_pred cCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CEE
Confidence 32221 2999998643 24799999999976 889999999976 67999999999999987754321 369
Q ss_pred EEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEe--
Q 011804 352 IIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA-- 429 (477)
Q Consensus 352 iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~-- 429 (477)
||||||++++||++++++|.+++.+. ...+ +|.++|.....+|+|+|+| +|++++|++++|++..
T Consensus 202 iiDTGTs~~~lP~~~~~~l~~~~~~~-----~~~~-------~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~ 268 (316)
T cd05486 202 IVDTGTSLITGPSGDIKQLQNYIGAT-----ATDG-------EYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQS 268 (316)
T ss_pred EECCCcchhhcCHHHHHHHHHHhCCc-----ccCC-------cEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEeccc
Confidence 99999999999999999998877532 1112 3667777666899999999 7899999999999875
Q ss_pred CCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 430 SVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 430 ~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
.....|+ +|+... ...+.||||++|||++|+|||.+++|||||+
T Consensus 269 ~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 269 DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 3456898 676542 2345799999999999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.6e-53 Score=425.38 Aligned_cols=295 Identities=23% Similarity=0.417 Sum_probs=244.8
Q ss_pred CCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccccCCCCC
Q 011804 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (477)
Q Consensus 125 ~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 202 (477)
.++.+..|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+|++..
T Consensus 4 ~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~----------------- 64 (320)
T cd05488 4 TNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKAN----------------- 64 (320)
T ss_pred cccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeC-----------------
Confidence 45566899999999999999999999999999999999984 7644 79999999999863
Q ss_pred CCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccceeec-
Q 011804 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSIITRT- 278 (477)
Q Consensus 203 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ~- 278 (477)
+ |.|.+.|++|+ +.|.+++|+++|++.. ++ ++.|||++...+. | ...+||||||++..+...+.
T Consensus 65 ~-----~~~~~~y~~g~-~~G~~~~D~v~ig~~~----~~--~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 65 G-----TEFKIQYGSGS-LEGFVSQDTLSIGDLT----IK--KQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred C-----CEEEEEECCce-EEEEEEEeEEEECCEE----EC--CEEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 1 78999999997 7999999999998765 77 9999999887664 2 36799999999987654321
Q ss_pred -----c------ccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcc
Q 011804 279 -----N------TSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYF 346 (477)
Q Consensus 279 -----~------~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f 346 (477)
. ...||+||.+.....|.|+|||+|+. +.+++.|+|+.. ..+|.|++++|+||++.+..+.
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~--- 205 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN--- 205 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC---
Confidence 1 11299999986556799999999976 788999999986 5789999999999998876432
Q ss_pred cCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeE
Q 011804 347 TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL 426 (477)
Q Consensus 347 ~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l 426 (477)
..++|||||++++||++++++|.+++++.. . ...+|.++|.....+|.|+|+| +|+++.|++++|+
T Consensus 206 --~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----~-------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~ 271 (320)
T cd05488 206 --TGAAIDTGTSLIALPSDLAEMLNAEIGAKK----S-------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYT 271 (320)
T ss_pred --CeEEEcCCcccccCCHHHHHHHHHHhCCcc----c-------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHhe
Confidence 459999999999999999999988875431 1 1224777777767899999999 7899999999999
Q ss_pred EEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 427 VVASVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 427 ~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
++. ...|+ .|.... ...+.||||++|||++|++||.+++|||||+
T Consensus 272 ~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 272 LEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 864 45798 555432 1234799999999999999999999999996
No 12
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.1e-52 Score=428.37 Aligned_cols=312 Identities=26% Similarity=0.364 Sum_probs=241.0
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+|++... |
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~~----------------------~ 55 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDLG----------------------K 55 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccCC----------------------c
Confidence 4799999999999999999999999999999988433 4689999999999853 7
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCC---CCCceeecCCCCc------------cc
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKS---GASGIMGLDRSPV------------SI 274 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~---~~~GilGLg~~~~------------Sl 274 (477)
.|.++|++|+ +.|.+++|+|+|++.. +..+ .+.|++.....+.+. ..+||||||++.+ ++
T Consensus 56 ~~~i~Yg~Gs-~~G~~~~D~v~ig~~~-~~~~---~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l 130 (364)
T cd05473 56 GVTVPYTQGS-WEGELGTDLVSIPKGP-NVTF---RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSL 130 (364)
T ss_pred eEEEEECcce-EEEEEEEEEEEECCCC-ccce---EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHH
Confidence 8999999996 7999999999998532 1011 234677766655432 5799999999876 45
Q ss_pred eeeccccc-eEEecCC---------CCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCC
Q 011804 275 ITRTNTSY-FSYCLPS---------PYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNT 343 (477)
Q Consensus 275 ~sQ~~~~~-FS~cL~~---------~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~ 343 (477)
++|..... ||++|.. .....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+||++.+.++.
T Consensus 131 ~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 131 VKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred HhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEeccccc
Confidence 56655433 9997742 1124799999999976 788999999987 5789999999999999988665
Q ss_pred CcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccC-CCccccceeeccCCcccccCeEEEEEcCC-----cE
Q 011804 344 SYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKG-LEDLLDTCYDLSAYETVVVPKIAIHFLGG-----VD 417 (477)
Q Consensus 344 ~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg-----~~ 417 (477)
..+...++||||||++++||+++|++|.+++++++........ .......|+.........+|+|+|+|+|+ .+
T Consensus 207 ~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~ 286 (364)
T cd05473 207 KEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFR 286 (364)
T ss_pred ccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEE
Confidence 5443346999999999999999999999999987532110011 00122467754332224689999999652 47
Q ss_pred EEEcCCCeEEEeC---CCeEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 418 LELDVRGTLVVAS---VSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 418 ~~l~~~~~l~~~~---~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+.|+|++|+.... ....|+++.... ..+.||||++|||++|++||++++|||||+++|+
T Consensus 287 l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 287 ITILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EEECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 8999999987642 246898654332 2356999999999999999999999999999995
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.5e-52 Score=421.02 Aligned_cols=299 Identities=24% Similarity=0.411 Sum_probs=245.8
Q ss_pred ccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC----CccCCCCCCccCCCCCccceecCCCccccccccC
Q 011804 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRES 198 (477)
Q Consensus 123 ~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 198 (477)
.+.++.+..|+++|.||||+|++.|++||||+++||+|.+|. .|.. .+.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEECC------------
Confidence 345667799999999999999999999999999999999997 3643 4789999999998742
Q ss_pred CCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccc-
Q 011804 199 FPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI- 274 (477)
Q Consensus 199 ~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl- 274 (477)
|.|.+.|++|+ +.|.+++|+++|++.. ++ ++.|||+.+..+. | ...+||||||++.++.
T Consensus 69 ----------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 131 (329)
T cd05485 69 ----------TEFAIQYGSGS-LSGFLSTDTVSVGGVS----VK--GQTFAEAINEPGLTFVAAKFDGILGMGYSSISVD 131 (329)
T ss_pred ----------eEEEEEECCce-EEEEEecCcEEECCEE----EC--CEEEEEEEecCCccccccccceEEEcCCcccccc
Confidence 78999999997 8999999999998765 77 9999999887652 3 2579999999987764
Q ss_pred -----eeecccc------ceEEecCCCCC--CcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEee
Q 011804 275 -----ITRTNTS------YFSYCLPSPYG--STGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340 (477)
Q Consensus 275 -----~sQ~~~~------~FS~cL~~~~~--~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~ 340 (477)
+.|+..+ .||+||.+..+ ..|.|+|||+|+. +.+++.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 132 ~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 132 GVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred CCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeec
Confidence 2233222 29999986543 4699999999976 788999999976 6799999999999998754
Q ss_pred cCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEE
Q 011804 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLEL 420 (477)
Q Consensus 341 ~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l 420 (477)
. ....+||||||++++||++++++|.+++.+. ... ..||.++|.....+|+|+|+| ||+++.|
T Consensus 208 ~-----~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~-------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i 270 (329)
T cd05485 208 S-----GGCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII-------GGEYMVNCSAIPSLPDITFVL-GGKSFSL 270 (329)
T ss_pred C-----CCcEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc-------CCcEEEeccccccCCcEEEEE-CCEEeEE
Confidence 1 1135999999999999999999999887642 111 124777888777789999999 7899999
Q ss_pred cCCCeEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 421 DVRGTLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 421 ~~~~~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
++++|+++.. ....|+ +|+... ...+.||||+.|||++|+|||++++|||||+
T Consensus 271 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 271 TGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9999998863 346898 677532 2345799999999999999999999999985
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.3e-52 Score=419.97 Aligned_cols=296 Identities=24% Similarity=0.424 Sum_probs=243.3
Q ss_pred CCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC----ccCCCCCCccCCCCCccceecCCCccccccccCCCC
Q 011804 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH----CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPF 201 (477)
Q Consensus 126 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~----C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 201 (477)
++.+..|+++|+||||+|+++|+|||||+++||+|..|.. |. .++.|||++|+||+...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACV--THNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhc--ccCcCCCCCCeeeeECC---------------
Confidence 4556899999999999999999999999999999888864 54 44799999999998742
Q ss_pred CCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCcc-----
Q 011804 202 GNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVS----- 273 (477)
Q Consensus 202 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~S----- 273 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. + ++.||++....+ .| ...+||||||++..+
T Consensus 66 -------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~----~---~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 130 (326)
T cd05487 66 -------TEFTIHYASGT-VKGFLSQDIVTVGGIP----V---TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVT 130 (326)
T ss_pred -------EEEEEEeCCce-EEEEEeeeEEEECCEE----e---eEEEEEEEeccCCccceeecceEEecCChhhcccCCC
Confidence 78999999997 8999999999998764 4 377999987643 22 368999999998765
Q ss_pred -----ceeecccc--ceEEecCCCC--CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCC
Q 011804 274 -----IITRTNTS--YFSYCLPSPY--GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNT 343 (477)
Q Consensus 274 -----l~sQ~~~~--~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~ 343 (477)
+.+|-... .||+||++.+ ...|.|+|||+|+. +.+++.|+|+.. ..+|.|+|++|+||++.+....
T Consensus 131 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~ 206 (326)
T cd05487 131 PVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCED 206 (326)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCC
Confidence 44553322 2999998754 24799999999976 889999999976 6789999999999999875432
Q ss_pred CcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCC
Q 011804 344 SYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVR 423 (477)
Q Consensus 344 ~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 423 (477)
. ..+||||||++++||++++++|++++++. +. .+ +|.++|.....+|.|+|+| ||+++.|+++
T Consensus 207 ~----~~aiiDSGts~~~lP~~~~~~l~~~~~~~---~~--~~-------~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~ 269 (326)
T cd05487 207 G----CTAVVDTGASFISGPTSSISKLMEALGAK---ER--LG-------DYVVKCNEVPTLPDISFHL-GGKEYTLSSS 269 (326)
T ss_pred C----CEEEECCCccchhCcHHHHHHHHHHhCCc---cc--CC-------CEEEeccccCCCCCEEEEE-CCEEEEeCHH
Confidence 1 35999999999999999999999988653 11 22 2666777767899999999 7899999999
Q ss_pred CeEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 424 GTLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 424 ~~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
+|+++.. .+..|+ +|...+ ...+.||||++|||++|++||++++|||||++
T Consensus 270 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 270 DYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9998763 256897 787642 23457999999999999999999999999985
No 15
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1e-51 Score=415.61 Aligned_cols=288 Identities=24% Similarity=0.442 Sum_probs=234.5
Q ss_pred cCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC---CccCCCCCCccCCCCCccceecCCCccccccccCCC
Q 011804 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFP 200 (477)
Q Consensus 124 ~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~ 200 (477)
+.++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccCC--------------
Confidence 34566799999999999999999999999999999999996 48644 799999999998742
Q ss_pred CCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCccc---
Q 011804 201 FGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSI--- 274 (477)
Q Consensus 201 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~Sl--- 274 (477)
+.+.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||+...+.
T Consensus 67 --------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~----v~--~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 131 (317)
T cd06098 67 --------TSASIQYGTGS-ISGFFSQDSVTVGDLV----VK--NQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKA 131 (317)
T ss_pred --------CEEEEEcCCce-EEEEEEeeEEEECCEE----EC--CEEEEEEEecCCccccccccceeccccccchhhcCC
Confidence 57899999997 7999999999998865 78 999999997654 23 2689999999987654
Q ss_pred -------eeecc--ccceEEecCCCC--CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecC
Q 011804 275 -------ITRTN--TSYFSYCLPSPY--GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFN 342 (477)
Q Consensus 275 -------~sQ~~--~~~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~ 342 (477)
.+|-. ...||+||++.. ...|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|+++.+.+.
T Consensus 132 ~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~ 207 (317)
T cd06098 132 VPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFC 207 (317)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeec
Confidence 23321 122999998643 24799999999976 889999999976 578999999999999987654
Q ss_pred CCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcC
Q 011804 343 TSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDV 422 (477)
Q Consensus 343 ~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~ 422 (477)
... ..+||||||++++||++++++|. . ...|+ ....+|+|+|+| +|+.++|++
T Consensus 208 ~~~---~~aivDTGTs~~~lP~~~~~~i~---------------~---~~~C~-----~~~~~P~i~f~f-~g~~~~l~~ 260 (317)
T cd06098 208 AGG---CAAIADSGTSLLAGPTTIVTQIN---------------S---AVDCN-----SLSSMPNVSFTI-GGKTFELTP 260 (317)
T ss_pred CCC---cEEEEecCCcceeCCHHHHHhhh---------------c---cCCcc-----ccccCCcEEEEE-CCEEEEECh
Confidence 332 35999999999999998776553 0 11354 334789999999 789999999
Q ss_pred CCeEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 423 RGTLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 423 ~~~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||++++|||||+
T Consensus 261 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 261 EQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99998753 245898 676542 2345799999999999999999999999995
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.8e-51 Score=425.77 Aligned_cols=299 Identities=20% Similarity=0.315 Sum_probs=237.9
Q ss_pred ccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCC
Q 011804 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (477)
Q Consensus 123 ~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 202 (477)
.+.++.+.+|+++|+||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+||+...
T Consensus 131 ~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~---------------- 194 (453)
T PTZ00147 131 ELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG---------------- 194 (453)
T ss_pred eccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC----------------
Confidence 3445566999999999999999999999999999999999985333445899999999998742
Q ss_pred CCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC---C--CCCCceeecCCCCccce--
Q 011804 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD---K--SGASGIMGLDRSPVSII-- 275 (477)
Q Consensus 203 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~---~--~~~~GilGLg~~~~Sl~-- 275 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ..|+|+.+..+. + ...+||||||++.++..
T Consensus 195 ------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~----v~---~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 195 ------TKVEMNYVSGT-VSGFFSKDLVTIGNLS----VP---YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred ------CEEEEEeCCCC-EEEEEEEEEEEECCEE----EE---EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 68999999996 8999999999998865 66 479998876542 2 26899999999877542
Q ss_pred ----eecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCC
Q 011804 276 ----TRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTS 344 (477)
Q Consensus 276 ----sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~ 344 (477)
.|+..+ .||+||++.....|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ +.+|+...
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~----- 330 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS----- 330 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec-----
Confidence 233222 299999876556899999999976 789999999975 679999998 57776431
Q ss_pred cccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCC
Q 011804 345 YFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRG 424 (477)
Q Consensus 345 ~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 424 (477)
....+||||||+++++|++++++|.+++.+.. .+ ..+ . |..+|.. ..+|+|+|+| +|++++|+|++
T Consensus 331 --~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~-~~~--~-----y~~~C~~-~~lP~~~f~f-~g~~~~L~p~~ 396 (453)
T PTZ00147 331 --EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VP-FLP--L-----YVTTCNN-TKLPTLEFRS-PNKVYTLEPEY 396 (453)
T ss_pred --CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cC-CCC--e-----EEEeCCC-CCCCeEEEEE-CCEEEEECHHH
Confidence 12469999999999999999999999885421 11 111 1 3334443 4689999999 68999999999
Q ss_pred eEEEe--CCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 425 TLVVA--SVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 425 ~l~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
|+.+. .....|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 397 yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 397 YLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred heeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99764 2345797 787764344579999999999999999999999999875
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.7e-51 Score=401.25 Aligned_cols=258 Identities=28% Similarity=0.532 Sum_probs=215.9
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeec-CCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQC-KPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c-~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
++|+++|+||||+|++.|+|||||+++||+| .+|..| .
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-----------------------------------------~ 39 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-----------------------------------------Q 39 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-----------------------------------------c
Confidence 5799999999999999999999999999999 467655 0
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC----CCCCceeecCCCCccceeeccccc--
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK----SGASGIMGLDRSPVSIITRTNTSY-- 282 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~----~~~~GilGLg~~~~Sl~sQ~~~~~-- 282 (477)
|.|.++|+||+.+.|.+++|+|+|+...++..++ ++.|||++.+.+.+ ...+||||||+++.++++|+..+.
T Consensus 40 c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~--~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i 117 (273)
T cd05475 40 CDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKP--RIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII 117 (273)
T ss_pred CccEeEeCCCCceEEEEEEEEEEEeecCCCcccC--CEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc
Confidence 7899999988889999999999997643333466 99999998876532 268999999999999999987542
Q ss_pred ---eEEecCCCCCCcceEEeccccccCCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccc
Q 011804 283 ---FSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNII 359 (477)
Q Consensus 283 ---FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~ 359 (477)
||+||++. .+|.|+||+.. .+.+++.|+|+..++. ..+|.|++.+|+||++.+.. ...++||||||++
T Consensus 118 ~~~Fs~~l~~~--~~g~l~~G~~~-~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~-----~~~~~ivDTGTt~ 188 (273)
T cd05475 118 KNVIGHCLSSN--GGGFLFFGDDL-VPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG-----KGLEVVFDSGSSY 188 (273)
T ss_pred CceEEEEccCC--CCeEEEECCCC-CCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC-----CCceEEEECCCce
Confidence 99999873 46999999532 3667899999998652 56899999999999985321 2247999999999
Q ss_pred eeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCC---cEEEEcCCCeEEEeCCCeEEE
Q 011804 360 TRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGG---VDLELDVRGTLVVASVSQVCL 436 (477)
Q Consensus 360 t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~l~~~~~~~~Cl 436 (477)
++||+++| +|+|+|+|+++ ++++|++++|++....+..|+
T Consensus 189 t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl 231 (273)
T cd05475 189 TYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCL 231 (273)
T ss_pred EEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEE
Confidence 99999876 57899999544 799999999998866667899
Q ss_pred EEEecCC--CCCeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011804 437 GFATYPP--DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476 (477)
Q Consensus 437 ~~~~~~~--~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C 476 (477)
++....+ ..+.||||+.|||++|++||++++|||||+++|
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 8875532 235799999999999999999999999999999
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.1e-50 Score=416.59 Aligned_cols=296 Identities=21% Similarity=0.351 Sum_probs=236.0
Q ss_pred cCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccccCCCC
Q 011804 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPF 201 (477)
Q Consensus 124 ~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 201 (477)
+.++.+.+|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 131 l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~--~~~yd~s~SsT~~~~~--------------- 193 (450)
T PTZ00013 131 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI--KNLYDSSKSKSYEKDG--------------- 193 (450)
T ss_pred eeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc--CCCccCccCcccccCC---------------
Confidence 334556899999999999999999999999999999999974 754 4799999999998742
Q ss_pred CCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC---CC--CCCCceeecCCCCccc--
Q 011804 202 GNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG---DK--SGASGIMGLDRSPVSI-- 274 (477)
Q Consensus 202 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g---~~--~~~~GilGLg~~~~Sl-- 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ..||++.+..+ .+ ..++||||||++.++.
T Consensus 194 -------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~----~~---~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 194 -------TKVDITYGSGT-VKGFFSKDLVTLGHLS----MP---YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred -------cEEEEEECCce-EEEEEEEEEEEECCEE----Ec---cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 78999999997 8999999999998864 54 57888876543 12 2689999999987653
Q ss_pred ----eeecccc----c--eEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCC
Q 011804 275 ----ITRTNTS----Y--FSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNT 343 (477)
Q Consensus 275 ----~sQ~~~~----~--FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~ 343 (477)
+.|+..+ . ||+||++.....|.|+|||+|++ +.+++.|+|+.. ..+|.|.++ +.+|....
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~---- 329 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM---- 329 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec----
Confidence 2333322 1 99999876556899999999976 789999999975 679999998 67765432
Q ss_pred CcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCC
Q 011804 344 SYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVR 423 (477)
Q Consensus 344 ~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 423 (477)
....+||||||+++++|+++++++.+++.... . ...+. |..+|.. ..+|+|+|+| +|.+++|+|+
T Consensus 330 ---~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~-~~~~~-------y~~~C~~-~~lP~i~F~~-~g~~~~L~p~ 394 (450)
T PTZ00013 330 ---QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--V-PFLPF-------YVTTCDN-KEMPTLEFKS-ANNTYTLEPE 394 (450)
T ss_pred ---cccceEECCCCccccCCHHHHHHHHHHhCCee--c-CCCCe-------EEeecCC-CCCCeEEEEE-CCEEEEECHH
Confidence 12469999999999999999999988875421 1 11111 3444543 4689999999 7899999999
Q ss_pred CeEEEe--CCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 424 GTLVVA--SVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 424 ~~l~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+|+.+. ..+..|+ ++.+.+.+.+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 395 YYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 998753 2346897 777654445679999999999999999999999999875
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.8e-50 Score=391.65 Aligned_cols=253 Identities=40% Similarity=0.776 Sum_probs=221.7
Q ss_pred eEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCC
Q 011804 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (477)
Q Consensus 131 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (477)
+|+++|+||||+|++.|+|||||+++||+| |.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~------------------------------------------------~~ 32 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------------------------CS 32 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC------------------------------------------------Cc
Confidence 699999999999999999999999999986 25
Q ss_pred cceecCCCCeEeEeEEEEEEEEccc--CCCceeeecCeEEEEEecCCCCC-CCCCceeecCCCCccceeecccc--ceEE
Q 011804 211 FNIQYADGSGSGGFWATDRITIQEA--NSNGYFTRYPFLLGCINNSSGDK-SGASGIMGLDRSPVSIITRTNTS--YFSY 285 (477)
Q Consensus 211 y~~~Ygdgs~~~G~~~~Dtltl~~~--~~~~~v~~~~~~fG~~~~~~g~~-~~~~GilGLg~~~~Sl~sQ~~~~--~FS~ 285 (477)
|.++|+||+.+.|.+++|+|+|++. . ++ ++.|||+....+.. ...+||||||+...|+++|+..+ .||+
T Consensus 33 ~~~~Y~dg~~~~G~~~~D~v~~g~~~~~----~~--~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~ 106 (265)
T cd05476 33 YEYSYGDGSSTSGVLATETFTFGDSSVS----VP--NVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSY 106 (265)
T ss_pred eEeEeCCCceeeeeEEEEEEEecCCCCc----cC--CEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEE
Confidence 7889999988999999999999987 4 67 99999999987622 37899999999999999999887 4999
Q ss_pred ecCCC--CCCcceEEeccccccCCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcc-----cCCCEEEecccc
Q 011804 286 CLPSP--YGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYF-----TKFGAIIDSGNI 358 (477)
Q Consensus 286 cL~~~--~~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f-----~~g~~iiDSGT~ 358 (477)
||++. ....|+|+||++|+.+.+++.|+|++.++....+|.|+|++|+|+++.+.++...+ ....+||||||+
T Consensus 107 ~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs 186 (265)
T cd05476 107 CLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTT 186 (265)
T ss_pred EccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCc
Confidence 99875 34589999999997678999999999865446789999999999999987644322 124799999999
Q ss_pred ceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEE
Q 011804 359 ITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGF 438 (477)
Q Consensus 359 ~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~ 438 (477)
+++||+++| |+|+|+|++|.++.+++++|+++...+..|+++
T Consensus 187 ~~~lp~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~ 228 (265)
T cd05476 187 LTYLPDPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAI 228 (265)
T ss_pred ceEcCcccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEE
Confidence 999998876 789999965899999999999977667899988
Q ss_pred EecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCC
Q 011804 439 ATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476 (477)
Q Consensus 439 ~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C 476 (477)
.... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 229 ~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 229 LSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred ecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 8653 456799999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-48 Score=381.76 Aligned_cols=261 Identities=28% Similarity=0.422 Sum_probs=217.2
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCCc
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPF 211 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~y 211 (477)
|+++|+||||+|++.|+|||||+++||+|+.|..|..+..+.|||++|+|++..+ + |.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~----------------~-----~~~ 59 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP----------------G-----ATW 59 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC----------------C-----cEE
Confidence 8999999999999999999999999999999998877777889999999998752 2 789
Q ss_pred ceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCcccee---------ecc
Q 011804 212 NIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSIIT---------RTN 279 (477)
Q Consensus 212 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~Sl~s---------Q~~ 279 (477)
.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+ .+ ...+||||||+...+... ++.
T Consensus 60 ~i~Y~~G~~~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~ 133 (278)
T cd06097 60 SISYGDGSSASGIVYTDTVSIGGVE----VP--NQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENAL 133 (278)
T ss_pred EEEeCCCCeEEEEEEEEEEEECCEE----EC--CeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHH
Confidence 9999999888999999999998865 78 999999998765 22 379999999998765432 222
Q ss_pred c----cceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEe
Q 011804 280 T----SYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIID 354 (477)
Q Consensus 280 ~----~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiD 354 (477)
. ..||+||.+. ..|.|+|||+|+. +.+++.|+|+..+ ..+|.|++++|+||++..... ....+|||
T Consensus 134 ~~~~~~~Fs~~l~~~--~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~----~~~~~iiD 204 (278)
T cd06097 134 SSLDAPLFTADLRKA--APGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSR----SGFSAIAD 204 (278)
T ss_pred HhccCceEEEEecCC--CCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeec----CCceEEee
Confidence 2 2399999862 4799999999976 8899999999863 468999999999999843321 12469999
Q ss_pred ccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeE
Q 011804 355 SGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQV 434 (477)
Q Consensus 355 SGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~ 434 (477)
|||+++++|++++++|.+++... .+... ..+|.++|... +|+|+|+|
T Consensus 205 SGTs~~~lP~~~~~~l~~~l~g~--~~~~~-------~~~~~~~C~~~--~P~i~f~~---------------------- 251 (278)
T cd06097 205 TGTTLILLPDAIVEAYYSQVPGA--YYDSE-------YGGWVFPCDTT--LPDLSFAV---------------------- 251 (278)
T ss_pred cCCchhcCCHHHHHHHHHhCcCC--cccCC-------CCEEEEECCCC--CCCEEEEE----------------------
Confidence 99999999999999999887421 12111 23478888864 89999999
Q ss_pred EEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 435 CLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 435 Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.1e-47 Score=377.32 Aligned_cols=269 Identities=26% Similarity=0.419 Sum_probs=223.5
Q ss_pred eEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCC
Q 011804 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (477)
Q Consensus 131 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (477)
.|+++|.||||+|++.|++||||+++||+ .
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------~ 31 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------D 31 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------e
Confidence 69999999999999999999999999997 1
Q ss_pred cceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCCCCc-----------cceeecc
Q 011804 211 FNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPV-----------SIITRTN 279 (477)
Q Consensus 211 y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~~~~-----------Sl~sQ~~ 279 (477)
|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||+++.. ..+||||||+.+. +++.|+.
T Consensus 32 ~~~~Y~~g~~~~G~~~~D~v~~g~~~----~~--~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 32 FSISYGDGTSASGTWGTDTVSIGGAT----VK--NLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eEEEeccCCcEEEEEEEEEEEECCeE----ec--ceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 67889998789999999999998875 78 99999999853 5799999999886 5677765
Q ss_pred ccc------eEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCC--CCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 280 TSY------FSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSE--QSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 280 ~~~------FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~--~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
.+. ||+||.+.....|.|+|||+|+. +.+++.|+|+..++. ...+|.|.+++|+|+++.+..+.. -....
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~-~~~~~ 180 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL-SKNLP 180 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc-CCCcc
Confidence 432 99999986556899999999975 788999999998542 247899999999999988754221 12257
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS 430 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~ 430 (477)
+||||||++++||+++|++|.+++.+... ...+ +|..+|..... |+|+|+| +|+++.|++++|+++..
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~---~~~~-------~~~~~C~~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~ 248 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYD---SDEG-------LYVVDCDAKDD-GSLTFNF-GGATISVPLSDLVLPAS 248 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEc---CCCc-------EEEEeCCCCCC-CEEEEEE-CCeEEEEEHHHhEeccc
Confidence 99999999999999999999999976522 1112 24455555545 9999999 67999999999998764
Q ss_pred ----CCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 431 ----VSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 431 ----~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
....|+ +|.+... +.||||++|||++|++||.+++|||||++
T Consensus 249 ~~~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 249 TDDGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cCCCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 367895 8887632 67999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-45 Score=369.79 Aligned_cols=294 Identities=29% Similarity=0.495 Sum_probs=244.1
Q ss_pred eEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCc-cCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC-FQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 131 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C-~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
+|+++|.||||+|++.|++||||+.+||+++.|..| .......|++++|+|++... +
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------~ 58 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------K 58 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE----------------------E
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce----------------------e
Confidence 699999999999999999999999999999988865 33455899999999998863 6
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC---CCCCCceeecCCCCc-------cceeecc
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD---KSGASGIMGLDRSPV-------SIITRTN 279 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~---~~~~~GilGLg~~~~-------Sl~sQ~~ 279 (477)
.+.+.|++|+ ++|.+++|+|+|++.. +. ++.||.+....+. ....+||||||+... +++.|+.
T Consensus 59 ~~~~~y~~g~-~~G~~~~D~v~ig~~~----~~--~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 59 PFSISYGDGS-VSGNLVSDTVSIGGLT----IP--NQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred eeeeeccCcc-cccccccceEeeeecc----cc--ccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 7999999998 9999999999999875 77 8999999996542 347899999997543 4555555
Q ss_pred ccc------eEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEE
Q 011804 280 TSY------FSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAI 352 (477)
Q Consensus 280 ~~~------FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~i 352 (477)
.+. ||++|.+.....|.|+|||+|++ +.++++|+|+.. ..+|.|.+++|++++....... . ..++
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~-~---~~~~ 203 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSS-G---QQAI 203 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEE-E---EEEE
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCccc----cccccccccccccccccccccc-c---eeee
Confidence 443 99999987656799999999986 789999999995 6789999999999999332211 1 2499
Q ss_pred EeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCC-
Q 011804 353 IDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASV- 431 (477)
Q Consensus 353 iDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~- 431 (477)
||||+++++||.+++++|.+++...... + .|.++|.....+|.++|+| ++.++.|++++|+.+...
T Consensus 204 ~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----~-------~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 204 LDTGTSYIYLPRSIFDAIIKALGGSYSD-----G-------VYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EETTBSSEEEEHHHHHHHHHHHTTEEEC-----S-------EEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESST
T ss_pred cccccccccccchhhHHHHhhhcccccc-----e-------eEEEecccccccceEEEee-CCEEEEecchHhccccccc
Confidence 9999999999999999999999765211 2 3788888877899999999 789999999999988743
Q ss_pred -CeEEE-EEEec--CCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 432 -SQVCL-GFATY--PPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 432 -~~~Cl-~~~~~--~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
...|+ +|... ....+.+|||.+|||++|++||.+++|||||+|
T Consensus 271 ~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 271 NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 33897 67762 235678999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2e-44 Score=355.35 Aligned_cols=264 Identities=34% Similarity=0.584 Sum_probs=221.9
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCC--ccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPF--FYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++..- .|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~----------------------~~ 58 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT----------------------GC 58 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC----------------------CC
Confidence 789999999999999999999999999999999876554444 777777766542 28
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC--CCCCCceeecCCCC------ccceeecccc
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD--KSGASGIMGLDRSP------VSIITRTNTS 281 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~--~~~~~GilGLg~~~------~Sl~sQ~~~~ 281 (477)
.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. ....+||||||+.. .+++.|+..+
T Consensus 59 ~~~~~Y~~g~-~~g~~~~D~v~~~~~~----~~--~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~ 131 (283)
T cd05471 59 TFSITYGDGS-VTGGLGTDTVTIGGLT----IP--NQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQ 131 (283)
T ss_pred EEEEEECCCe-EEEEEEEeEEEECCEE----Ee--ceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHC
Confidence 9999999985 8999999999999875 77 9999999998752 23799999999998 6788887764
Q ss_pred c------eEEecCCC--CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEE
Q 011804 282 Y------FSYCLPSP--YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAI 352 (477)
Q Consensus 282 ~------FS~cL~~~--~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~i 352 (477)
. ||+||.+. ....|.|+|||+|+. +.+++.|+|++.. ...+|.|.+++|.|+++..... .....++
T Consensus 132 ~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~---~~~~~~i 206 (283)
T cd05471 132 GLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISS---SGGGGAI 206 (283)
T ss_pred CCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeec---CCCcEEE
Confidence 2 99999985 245899999999976 7899999999985 3678999999999999751111 1224799
Q ss_pred EeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCC
Q 011804 353 IDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVS 432 (477)
Q Consensus 353 iDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~ 432 (477)
|||||++++||+++|++|.+++.+.... ...|+...|.....+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~p~i~f~f-------------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSPCDTLPDITFTF-------------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCcccCcCCCEEEEE--------------------
Confidence 9999999999999999999999876321 2345667777778899999999
Q ss_pred eEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 433 QVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 433 ~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
.+|||++|||++|++||.++++||||+
T Consensus 257 --------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 599999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=3.7e-33 Score=254.00 Aligned_cols=159 Identities=43% Similarity=0.848 Sum_probs=128.3
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCCc
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPF 211 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~y 211 (477)
|+++|.||||+|++.|+|||||+++|+|| .++.|+|++|+||+.++|.++.|...........|.+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 348999999999999999999999775321101223578999
Q ss_pred ceecCCCCeEeEeEEEEEEEEcccCCC-ceeeecCeEEEEEecCCCCCCCCCceeecCCCCccceeec---cccceEEec
Q 011804 212 NIQYADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRT---NTSYFSYCL 287 (477)
Q Consensus 212 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~-~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~~~~Sl~sQ~---~~~~FS~cL 287 (477)
.+.|+|++.+.|++++|+|+++...++ ..+. ++.|||++...|.+...+||||||++++||++|+ ....|||||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~--~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVP--DFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEE--EEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceee--eEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 999999999999999999999886432 2456 8999999999998889999999999999999999 444599999
Q ss_pred CC-CCCCcceEEecc
Q 011804 288 PS-PYGSTGYITFGK 301 (477)
Q Consensus 288 ~~-~~~~~G~L~fGg 301 (477)
++ .....|+|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 445789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=1.3e-28 Score=223.62 Aligned_cols=149 Identities=42% Similarity=0.689 Sum_probs=122.4
Q ss_pred eEEEEEEEEEECCEEeecCCCcc----cCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcc--c-ccCCCccccceee
Q 011804 324 FYDIILTGISVGGKKLPFNTSYF----TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYK--K-AKGLEDLLDTCYD 396 (477)
Q Consensus 324 ~y~v~l~gIsvgg~~l~~~~~~f----~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~~Cy~ 396 (477)
+|+|+|++|+||++++++++..| ..+++||||||++|+||+++|++|+++|.+++.... + .... ..++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~-~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPF-SGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE----TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccC-CCCCceee
Confidence 59999999999999999999988 347999999999999999999999999999988642 2 2334 78899999
Q ss_pred ccC----CcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEEEec-CCCCCeeeechhhhcceEEEEECCCCEEEE
Q 011804 397 LSA----YETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATY-PPDPNSITLGNVQQRGHEVHYDVAGRRLGF 471 (477)
Q Consensus 397 ~~~----~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~-~~~~~~~IlG~~f~~~~~vvfD~~~~rIGF 471 (477)
.+. .....+|+|+|||+||++++|++++|++....+..|++|..+ ....+.+|||+.+|++++++||++++||||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF 159 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGF 159 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEE
Confidence 987 356789999999998999999999999999888999999987 334678999999999999999999999999
Q ss_pred ee
Q 011804 472 GP 473 (477)
Q Consensus 472 a~ 473 (477)
+|
T Consensus 160 ~~ 161 (161)
T PF14541_consen 160 AP 161 (161)
T ss_dssp EE
T ss_pred eC
Confidence 97
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=2.1e-23 Score=176.63 Aligned_cols=105 Identities=31% Similarity=0.533 Sum_probs=92.6
Q ss_pred EEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCc-cCCCCCccceecCCCccccccccCCCCCCCCCCCCCcc
Q 011804 134 IVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFF-YASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFN 212 (477)
Q Consensus 134 ~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~y~ 212 (477)
++|.||||+|++.|+|||||+++||+|++|..|..+..+.| ||++|++++... |.|.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~----------------------~~~~ 58 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG----------------------CTFS 58 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC----------------------cEEE
Confidence 47999999999999999999999999999988766666777 999999988742 7999
Q ss_pred eecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeec
Q 011804 213 IQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGL 267 (477)
Q Consensus 213 ~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGL 267 (477)
+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+.+ ...+|||||
T Consensus 59 ~~Y~~g~-~~g~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 59 ITYGTGS-LSGGLSTDTVSIGDIE----VV--GQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEeCCCe-EEEEEEEEEEEECCEE----EC--CEEEEEEEecCCccccccccccccCC
Confidence 9999996 7899999999998875 77 99999999997753 478999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.76 E-value=8.7e-05 Score=60.36 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=65.7
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c 209 (477)
+.|++++.|+ .+++.+++|||++.+|+.-.-...+. . .... ..
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~-----~-------~~~~-----------------------~~ 43 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG-----L-------PLTL-----------------------GG 43 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC-----C-------CccC-----------------------CC
Confidence 3589999999 89999999999999999653211110 0 0000 02
Q ss_pred CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCC
Q 011804 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDR 269 (477)
Q Consensus 210 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~ 269 (477)
...+...+|.........+.+++++.. ++ ++.+........ ..+||||+.+
T Consensus 44 ~~~~~~~~G~~~~~~~~~~~i~ig~~~----~~--~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 44 KVTVQTANGRVRAARVRLDSLQIGGIT----LR--NVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred cEEEEecCCCccceEEEcceEEECCcE----Ee--ccEEEEeCCccc---CCceEeChHH
Confidence 456666777766666668899998875 77 888877766542 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.78 E-value=0.041 Score=47.33 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=61.1
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.++.|++++.|. .+++.+++|||++.+-+..+--... ..++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~~-~-------------------------- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNRL-G-------------------------- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCcccC-C--------------------------
Confidence 459999999998 7899999999999998754321100 0111100 0
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCC
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDR 269 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~ 269 (477)
-...+.=..|......+.-|.+++++.. ++ |+.+....... ..+|+||+.+
T Consensus 53 -~~~~~~ta~G~~~~~~~~l~~l~iG~~~----~~--nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 53 -YTVTVSTANGQIKAARVTLDRVAIGGIV----VN--DVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred -ceEEEEeCCCcEEEEEEEeCEEEECCEE----Ee--CcEEEEeCCCc----CCceEcCHHH
Confidence 0122222345444455678899999875 77 88877765432 2479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.41 E-value=0.23 Score=39.40 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=52.4
Q ss_pred EEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCCcce
Q 011804 134 IVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNI 213 (477)
Q Consensus 134 ~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~y~~ 213 (477)
|++.|+ .+++.+++|||++.+.+.-.-.... ...+.... ....+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l------~~~~~~~~----------------------------~~~~~ 44 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKL------GLKPRPKS----------------------------VPISV 44 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHc------CCCCcCCc----------------------------eeEEE
Confidence 466777 7899999999999887753322111 00010000 11222
Q ss_pred ecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecC
Q 011804 214 QYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLD 268 (477)
Q Consensus 214 ~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg 268 (477)
.-.+|.........+.+++++.. +. ++.|-..... ...+||||+-
T Consensus 45 ~~~~g~~~~~~~~~~~i~ig~~~----~~--~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 45 SGAGGSVTVYRGRVDSITIGGIT----LK--NVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred EeCCCCEEEEEEEEEEEEECCEE----EE--eEEEEEECCC----CCCEEEeCCc
Confidence 22344444555666789998865 66 7777666622 2678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.97 E-value=0.27 Score=42.28 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=57.1
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcc-cccCCCccccceeeccCCcccccCeEEE
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYK-KAKGLEDLLDTCYDLSAYETVVVPKIAI 410 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~~Cy~~~~~~~~~~P~i~~ 410 (477)
+.|+|..+. ++||||++.+.++++..+.+--...... .+. ...+. ... .+ ........+
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~-g~~-~~-------~g~~~~~~l 80 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGV-GTQ-KI-------LGRIHLAQV 80 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecC-CCc-EE-------EeEEEEEEE
Confidence 567887653 8999999999999998766432111000 000 01111 000 00 011223445
Q ss_pred EEcCCcEEEEcCCCeEEEeCCCeEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEE
Q 011804 411 HFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGF 471 (477)
Q Consensus 411 ~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGF 471 (477)
.+ ++..+.+ + +.+.+. +....|||..||+.+..+.|+.+++|-|
T Consensus 81 ~i-~~~~~~~---~-----------~~Vl~~--~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 81 KI-GNLFLPC---S-----------FTVLED--DDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EE-CCEEeee---E-----------EEEECC--CCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 55 3433211 1 112222 2334899999999999999999998853
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.26 E-value=0.32 Score=39.24 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=25.5
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecCC
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
|++++.|+ .+++.+++||||+..++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 899999999999999996553
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=90.12 E-value=1.5 Score=37.75 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=26.5
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
..+++++.|+ ++++.+++|||++.+++.-.
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 6789999999 88999999999999998543
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.00 E-value=3.2 Score=34.67 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.0
Q ss_pred CeeeechhhhcceEEEEECCCCEE
Q 011804 446 NSITLGNVQQRGHEVHYDVAGRRL 469 (477)
Q Consensus 446 ~~~IlG~~f~~~~~vvfD~~~~rI 469 (477)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999988753
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=83.82 E-value=2.7 Score=35.95 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=28.4
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
..+|+++ +.|+|+++. .+||||.+.+.++++..++|
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5567665 668888543 89999999999999987665
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.22 E-value=1.9 Score=33.14 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.6
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeecCCC
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C 163 (477)
+.+++++.|| ++.+.+++|||++...+..+-+
T Consensus 7 g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 7 GLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 8899999999 7999999999999999876544
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.63 E-value=2.3 Score=33.42 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.3
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
+.|+|+++. ++||||.+.+.+.++.++.+
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 567887643 89999999999999988776
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.37 E-value=2.4 Score=34.45 Aligned_cols=28 Identities=43% Similarity=0.587 Sum_probs=23.3
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecCC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
+++|.|. .+++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4677777 789999999999999987653
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=78.44 E-value=8 Score=33.79 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=25.7
Q ss_pred eeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 447 SITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 447 ~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4999999999999999999999999753
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=75.77 E-value=4.2 Score=32.60 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.3
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
+.|+|+++. ..||||++.+.++++.+..+
T Consensus 5 ~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 678898765 89999999999999988765
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.07 E-value=7.1 Score=30.92 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=24.3
Q ss_pred EEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 331 GISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 331 gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
.+.|+++++. ++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 3677877654 89999999999999877665
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.88 E-value=6.2 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=24.8
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
+.|+|..+. +++|||.+...++.+..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 668887654 99999999999999988776
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.37 E-value=6.3 Score=31.71 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 135 VVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 135 ~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
++.|+ .|.+.+++|||.|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45677 89999999999999998653
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.38 E-value=10 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567887654 89999999999999988765
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.01 E-value=9.6 Score=30.26 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.7
Q ss_pred EEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 135 VVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 135 ~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
.+.|. ++++.+++|||++.+-+.-.
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45565 78999999999999999654
No 45
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.68 E-value=18 Score=33.91 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.+|.|.++..|- +|++..++|||-+.+-+.-+.-.. --||.+...
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l~--------------------------- 146 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSLD--------------------------- 146 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCccccC---------------------------
Confidence 459999999998 999999999999988886543211 123332210
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccC
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEAN 236 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~ 236 (477)
-.+.+.-.+|....-.+-.|.|.|++..
T Consensus 147 -y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 147 -YTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred -CceEEEccCCccccceEEeeeEEEccEE
Confidence 2445555678755556778999999875
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.40 E-value=9.8 Score=30.80 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 331 GISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 331 gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
.|.++|+.+. ++||||+..+.++++.
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE----------EEEecCCCcceecccc
Confidence 3667777654 9999999999999764
No 47
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=54.24 E-value=1.4e+02 Score=30.64 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred eecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecC-----------------CCCCCCCCceeecCCCCc---
Q 011804 213 IQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNS-----------------SGDKSGASGIMGLDRSPV--- 272 (477)
Q Consensus 213 ~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~-----------------~g~~~~~~GilGLg~~~~--- 272 (477)
..|++| ++=|-+.+-+|+|++.. -. ++++-...+. .-....++||||+|.-+.
T Consensus 82 ~~F~sg-ytWGsVr~AdV~igge~----A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG 154 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTIGGET----AS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCG 154 (370)
T ss_pred hhccCc-ccccceEEEEEEEcCee----cc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccC
Q ss_pred --------------------------cceeeccccc---------eEEecCCCCC-----CcceEEec-ccccc--CCCC
Q 011804 273 --------------------------SIITRTNTSY---------FSYCLPSPYG-----STGYITFG-KTDTV--NSKF 309 (477)
Q Consensus 273 --------------------------Sl~sQ~~~~~---------FS~cL~~~~~-----~~G~L~fG-g~d~~--~~~~ 309 (477)
.+-+|..... --+-||.-+. ..|.|+|| |.... ..+.
T Consensus 155 ~~C~~sa~~~~YY~C~~~~sCt~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~ 234 (370)
T PF11925_consen 155 AACAQSALPGNYYSCPSGGSCTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSG 234 (370)
T ss_pred chhhcccCCCceEECCCCCCeecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCccccc
Q ss_pred eeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceecc
Q 011804 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLP 363 (477)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP 363 (477)
....++.. ..+.....+|-++.. ..||||+--.++|
T Consensus 235 ~~~~~~~~----~G~~tt~~~G~t~~~--------------sf~DSGSNg~fF~ 270 (370)
T PF11925_consen 235 ATVLTTDS----NGDFTTTFNGQTYSA--------------SFFDSGSNGYFFP 270 (370)
T ss_pred ceEEeecC----CceEEEEecCceeee--------------eeEecCCceeecc
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.82 E-value=21 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEeccccceeccHHHHHHHH
Q 011804 351 AIIDSGNIITRLPPPIYAALR 371 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~ 371 (477)
..+|||.+...+|...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 889999999999999887763
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.18 E-value=35 Score=29.38 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=23.3
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHH
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAAL 370 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l 370 (477)
+.++|+.+. ++||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 678998864 99999999999999988774
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.11 E-value=77 Score=27.25 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=22.5
Q ss_pred EEEecCCCCCeeeechhhhcceEEEEECCCCEE
Q 011804 437 GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRL 469 (477)
Q Consensus 437 ~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rI 469 (477)
++.-.++..+.-+||-..|+..-.++|...+++
T Consensus 85 ~~Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 85 AFVLASDNLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred EEEEccCCCcccchhhhhhhhccEEEcCCcceE
Confidence 344333344445999999999999988866654
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=38.36 E-value=73 Score=29.90 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=27.9
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAA 369 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~ 369 (477)
+++|.++ ..|+|+.+. .++|||.+-..|+++..+.
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHH
Confidence 5566655 679999875 8999999999999886544
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=35.98 E-value=47 Score=30.07 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
...+.++.-..++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44455555589999999999999988653
No 53
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=32.30 E-value=23 Score=35.27 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHHHhhcCCC
Q 011804 1 MWILSKAFLLFICLLCSSNNG 21 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (477)
||||-.=.+||+|-||++-++
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 898855555555666666554
No 54
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=29.48 E-value=69 Score=19.45 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHh
Q 011804 2 WILSKAFLLFICLLC 16 (477)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (477)
-||+|++++++.++.
T Consensus 5 ~mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 5 SMMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467787777766553
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=28.62 E-value=2.5e+02 Score=26.29 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=20.2
Q ss_pred CCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 445 PNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 445 ~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
+-..|||+.|+|.|+=-...+ .+|-|..
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 345999999999887665554 4677653
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=28.06 E-value=98 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=21.8
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeec
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQC 160 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 160 (477)
...|+++.|+ .+++.+.+|||...+-+.-
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~ 51 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSK 51 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEH
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCH
Confidence 5689999999 8999999999999887754
No 57
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=27.46 E-value=48 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHHHhhc
Q 011804 1 MWILSKAFLLFICLLCSS 18 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (477)
||+...++|.+++|.+.+
T Consensus 1 MWIiiSIvLai~lLI~l~ 18 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLS 18 (66)
T ss_pred ChhhHHHHHHHHHHHHHh
Confidence 999988888877777644
No 58
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=23.01 E-value=47 Score=26.99 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.6
Q ss_pred EEEeccccceeccHHH
Q 011804 351 AIIDSGNIITRLPPPI 366 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~ 366 (477)
++||||++.++++...
T Consensus 14 ~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 14 VLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEeCCCCCEEEeCCC
Confidence 9999999999999764
No 59
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.01 E-value=82 Score=31.40 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.8
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+..|+++ |+||. |+..|. ++||||++.+++|..
T Consensus 8 ~~~Y~~~---i~iGt-----P~Q~~~---v~~DTGSs~lWv~~~ 40 (317)
T cd06098 8 DAQYFGE---IGIGT-----PPQKFT---VIFDTGSSNLWVPSS 40 (317)
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCccceEEecC
Confidence 4457664 67775 233354 999999999999964
No 60
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=21.72 E-value=85 Score=30.61 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=18.7
Q ss_pred EEEECCEEeecCCCcccCCCEEEeccccceecc
Q 011804 331 GISVGGKKLPFNTSYFTKFGAIIDSGNIITRLP 363 (477)
Q Consensus 331 gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP 363 (477)
.|.||.. +..|. ++||||++.+++|
T Consensus 6 ~i~iGtp-----~q~~~---v~~DTgS~~~wv~ 30 (295)
T cd05474 6 ELSVGTP-----PQKVT---VLLDTGSSDLWVP 30 (295)
T ss_pred EEEECCC-----CcEEE---EEEeCCCCcceee
Confidence 3667762 33344 9999999999999
No 61
>PTZ00165 aspartyl protease; Provisional
Probab=21.17 E-value=1e+02 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=29.5
Q ss_pred EeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHH
Q 011804 312 YTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIY 367 (477)
Q Consensus 312 ~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y 367 (477)
..|+.... +..|+++ |+||. |+..|. +++|||++.+|+|....
T Consensus 110 ~~~l~n~~--d~~Y~~~---I~IGT-----PpQ~f~---Vv~DTGSS~lWVps~~C 152 (482)
T PTZ00165 110 QQDLLNFH--NSQYFGE---IQVGT-----PPKSFV---VVFDTGSSNLWIPSKEC 152 (482)
T ss_pred ceeccccc--CCeEEEE---EEeCC-----CCceEE---EEEeCCCCCEEEEchhc
Confidence 44554422 4567665 77876 344566 99999999999997643
No 62
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=20.91 E-value=95 Score=30.94 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=23.5
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+..|+++ |.||. |+..|. ++||||++.+++|..
T Consensus 4 ~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 4 DAQYYGE---IGIGT-----PPQTFT---VVFDTGSSNLWVPSV 36 (325)
T ss_pred CCEEEEE---EEECC-----CCcEEE---EEEeCCCccEEEEcC
Confidence 3456664 66775 333455 999999999999864
No 63
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=20.02 E-value=1.1e+02 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=23.4
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
...|+++ |+||.. +..|. ++||||++.+++|..
T Consensus 8 ~~~Y~~~---i~iGtp-----~q~~~---v~~DTGSs~~wv~~~ 40 (320)
T cd05488 8 NAQYFTD---ITLGTP-----PQKFK---VILDTGSSNLWVPSV 40 (320)
T ss_pred CCEEEEE---EEECCC-----CcEEE---EEEecCCcceEEEcC
Confidence 3456655 778862 23344 999999999999964
Done!