Query 011804
Match_columns 477
No_of_seqs 360 out of 1779
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 8.4E-64 2.9E-68 518.7 30.1 343 115-474 6-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 2.3E-59 7.8E-64 484.9 29.6 339 117-477 9-395 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 1.5E-57 5E-62 465.9 27.3 303 122-475 48-370 (370)
4 1t6e_X Xylanase inhibitor; two 100.0 5.9E-57 2E-61 463.5 29.5 329 118-475 3-373 (381)
5 1tzs_A Cathepsin E; hydrolase, 100.0 1.7E-56 5.8E-61 455.2 27.9 301 125-477 18-344 (351)
6 1mpp_A Pepsin; hydrolase(acid 100.0 1.2E-56 4.1E-61 457.9 26.5 310 118-477 8-357 (361)
7 3c9x_A Trichoderma reesei aspa 100.0 3.1E-56 1.1E-60 449.3 26.0 297 128-474 13-329 (329)
8 1dpj_A Proteinase A; proteinas 100.0 4.5E-56 1.5E-60 448.1 27.0 301 119-475 4-329 (329)
9 1am5_A Pepsin, acid proteinase 100.0 4.3E-56 1.5E-60 447.3 26.6 300 119-475 3-324 (324)
10 1j71_A Candidapepsin, aspartic 100.0 3.3E-56 1.1E-60 450.0 25.8 296 118-477 3-326 (334)
11 3cms_A Chymosin B; hydrolase, 100.0 2E-56 6.8E-61 449.6 22.6 300 119-475 5-323 (323)
12 3fv3_A SAPP1P-secreted asparti 100.0 1.4E-55 4.7E-60 446.2 28.2 300 118-477 3-331 (339)
13 2qzx_A Candidapepsin-5; aspart 100.0 6.6E-56 2.3E-60 449.2 25.8 299 118-477 3-333 (342)
14 1oew_A Endothiapepsin; hydrola 100.0 5.9E-56 2E-60 447.3 25.0 296 128-474 13-329 (329)
15 2apr_A Rhizopuspepsin; hydrola 100.0 7.6E-56 2.6E-60 445.7 25.4 294 128-475 13-324 (325)
16 2x0b_A Renin; hydrolase-hormon 100.0 3.9E-56 1.3E-60 456.7 22.9 302 119-475 52-383 (383)
17 4aa9_A Chymosin; hydrolase, as 100.0 6.8E-56 2.3E-60 444.9 22.4 296 125-475 6-320 (320)
18 1htr_B Gastricsin; aspartyl pr 100.0 1.6E-55 5.4E-60 444.1 24.5 301 120-475 5-329 (329)
19 1miq_A Plasmepsin; aspartic pr 100.0 3.1E-55 1.1E-59 449.4 23.9 298 119-475 53-374 (375)
20 2ewy_A Beta-secretase 2; BACE2 100.0 9.3E-55 3.2E-59 447.3 26.6 311 129-477 12-357 (383)
21 3pvk_A Candidapepsin-2; hydrol 100.0 1.3E-54 4.3E-59 439.6 25.2 300 118-477 3-333 (342)
22 2qp8_A Beta-secretase 1; BACE1 100.0 4.2E-54 1.4E-58 444.3 26.6 310 129-477 20-369 (395)
23 1qdm_A Prophytepsin; aspartic 100.0 5.7E-54 1.9E-58 452.3 27.2 314 123-475 45-478 (478)
24 3k1w_A Renin; protease, altern 100.0 3.4E-54 1.2E-58 436.3 22.7 304 117-475 7-340 (341)
25 1yg9_A Aspartic protease BLA G 100.0 2E-54 6.8E-59 436.3 20.4 296 126-475 13-329 (330)
26 2bju_A Plasmepsin II; aspartic 100.0 4.6E-54 1.6E-58 448.9 23.5 299 119-475 129-450 (453)
27 3vf3_A Beta-secretase 1; struc 100.0 1.7E-53 5.9E-58 440.6 27.3 313 129-477 27-376 (402)
28 1izd_A Aspartic proteinase; su 100.0 1.6E-53 5.3E-58 428.5 23.3 292 129-475 14-323 (323)
29 1ibq_A Aspergillopepsin; aspar 100.0 2.4E-53 8.2E-58 427.5 24.4 294 128-475 12-325 (325)
30 3lpj_A Beta-secretase 1; alzhe 100.0 3.8E-53 1.3E-57 444.8 26.3 313 129-477 73-422 (455)
31 1bxo_A Protein (penicillopepsi 100.0 1.7E-53 5.7E-58 428.3 21.7 291 129-475 14-323 (323)
32 3qvc_A Histo-aspartic protease 100.0 1.8E-53 6E-58 444.9 22.0 298 119-475 128-449 (451)
33 1wkr_A Polyporopepsin; hydrola 100.0 1.6E-52 5.4E-57 424.0 25.2 296 119-477 4-335 (340)
34 1b5f_A Protein (cardosin A); h 100.0 8.2E-42 2.8E-46 328.8 16.6 218 119-376 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 6.5E-36 2.2E-40 287.8 19.3 214 240-475 4-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 7.2E-23 2.5E-27 168.4 8.3 89 119-234 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 2.3E-16 7.9E-21 126.9 8.3 80 395-475 3-87 (87)
38 2i1a_A DNA damage-inducible pr 89.1 0.99 3.4E-05 38.6 7.3 26 447-472 109-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 88.1 1 3.6E-05 38.8 6.7 109 324-473 24-134 (148)
40 1fmb_A EIAV protease; hydrolas 80.0 1.7 5.8E-05 35.1 4.1 26 132-159 9-34 (104)
41 2hs1_A HIV-1 protease; ultra-h 79.1 2.3 7.8E-05 34.0 4.5 28 133-162 10-37 (99)
42 3ec0_A Protease; HIV-2, inhibi 74.0 3.8 0.00013 32.7 4.5 28 133-162 10-37 (99)
43 2i1a_A DNA damage-inducible pr 69.5 3.7 0.00013 34.9 3.8 28 130-159 25-52 (148)
44 3liy_A Protease; hydrolase, hy 68.3 4.6 0.00016 33.0 3.8 31 133-163 12-45 (116)
45 2hah_A Protease, retropepsin; 67.6 4.8 0.00016 33.1 3.9 26 133-161 16-41 (116)
46 3sqf_A Protease; folded monome 61.1 8.4 0.00029 31.5 4.1 28 133-162 11-38 (114)
47 1lya_A Cathepsin D; lysosomal 59.1 13 0.00045 29.1 4.9 40 313-365 5-44 (97)
48 3s8i_A Protein DDI1 homolog 1; 59.0 7.6 0.00026 33.2 3.8 29 130-160 23-51 (148)
49 3slz_A GAG-Pro-POL polyprotein 46.4 18 0.00061 30.3 3.9 29 131-161 22-50 (132)
50 1bxo_A Protein (penicillopepsi 46.1 23 0.00078 34.0 5.3 42 308-366 4-45 (323)
51 2rsp_A RSV protease; hydrolase 44.0 17 0.00059 30.1 3.4 23 138-162 27-49 (124)
52 3ka2_A [L-Ala51;Gly51']HIV-1 p 43.1 20 0.00067 32.4 3.9 27 132-160 9-35 (203)
53 1izd_A Aspartic proteinase; su 42.3 27 0.00094 33.5 5.2 42 308-366 4-45 (323)
54 1ibq_A Aspergillopepsin; aspar 39.9 26 0.0009 33.6 4.6 40 310-366 5-44 (325)
55 1mpp_A Pepsin; hydrolase(acid 38.2 38 0.0013 32.9 5.6 46 307-365 4-49 (361)
56 3cms_A Chymosin B; hydrolase, 32.9 47 0.0016 31.7 5.2 43 310-365 3-45 (323)
57 3vla_A EDGP; extracellular, in 32.1 46 0.0016 33.2 5.1 46 308-365 6-51 (413)
58 1b5f_A Protein (cardosin A); h 29.1 51 0.0017 30.0 4.5 40 313-365 5-44 (239)
59 1oew_A Endothiapepsin; hydrola 29.0 56 0.0019 31.2 5.0 33 322-365 14-46 (329)
60 3psg_A Pepsinogen; hydrolase(a 28.0 34 0.0012 33.6 3.3 43 310-365 45-87 (370)
61 3c9x_A Trichoderma reesei aspa 27.5 62 0.0021 30.9 5.0 34 322-366 14-47 (329)
62 2apr_A Rhizopuspepsin; hydrola 27.0 67 0.0023 30.6 5.1 33 322-365 14-46 (325)
63 3aup_A SBG7S, BG, basic 7S glo 25.6 68 0.0023 31.7 5.0 42 312-365 11-52 (403)
64 3ka2_A [L-Ala51;Gly51']HIV-1 p 24.0 64 0.0022 29.0 3.9 28 132-161 113-140 (203)
65 3k1w_A Renin; protease, altern 23.5 61 0.0021 31.0 4.1 43 310-365 7-49 (341)
66 1am5_A Pepsin, acid proteinase 22.9 62 0.0021 30.8 4.0 40 313-365 4-43 (324)
67 1wkr_A Polyporopepsin; hydrola 22.9 82 0.0028 30.1 4.9 38 313-364 5-42 (340)
68 1j71_A Candidapepsin, aspartic 22.1 83 0.0028 30.1 4.7 39 313-365 5-43 (334)
69 3fv3_A SAPP1P-secreted asparti 21.9 84 0.0029 30.0 4.7 39 313-365 5-43 (339)
70 2x0b_A Renin; hydrolase-hormon 21.0 57 0.002 32.2 3.3 41 313-366 53-93 (383)
71 1dpj_A Proteinase A; proteinas 20.9 86 0.0029 29.8 4.5 40 313-365 5-44 (329)
72 1fmb_A EIAV protease; hydrolas 20.9 98 0.0034 24.5 4.1 29 329-367 10-38 (104)
73 4aa9_A Chymosin; hydrolase, as 20.7 50 0.0017 31.3 2.8 33 322-365 10-42 (320)
74 2qzx_A Candidapepsin-5; aspart 20.1 1.2E+02 0.004 29.0 5.3 33 322-365 11-43 (342)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=8.4e-64 Score=518.72 Aligned_cols=343 Identities=24% Similarity=0.406 Sum_probs=285.5
Q ss_pred CcceeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccc
Q 011804 115 TEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRI 194 (477)
Q Consensus 115 ~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 194 (477)
.+.+.+|+..+ ..+++|+++|+||||+|++.|+|||||+++||+|++| .+|+||+.++|.++.|..
T Consensus 6 ~~~~~~pv~~d-~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~ 71 (413)
T 3vla_A 6 PSALVVPVKKD-ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL 71 (413)
T ss_dssp CSEEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred CccEEEEeeec-CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence 34578898876 3459999999999999999999999999999999976 379999999999999987
Q ss_pred cccCC-------CCCCCCCCCCCcceec-CCCCeEeEeEEEEEEEEcccCCC-----ceeeecCeEEEEEecC--CCCCC
Q 011804 195 LRESF-------PFGNCNSKECPFNIQY-ADGSGSGGFWATDRITIQEANSN-----GYFTRYPFLLGCINNS--SGDKS 259 (477)
Q Consensus 195 ~~~~~-------~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~~~~~-----~~v~~~~~~fG~~~~~--~g~~~ 259 (477)
...+. ..+.|.++.|.|.+.| +||+.+.|++++|+|+|+..+++ ..++ ++.|||++.+ .+.+.
T Consensus 72 ~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~--~~~FGc~~~~~~~g~~~ 149 (413)
T 3vla_A 72 SGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP--RFIFSCAPTSLLQNLAS 149 (413)
T ss_dssp TTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEE--EEEEEEECGGGGTTSCT
T ss_pred cccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeC--CEEEECcccccccCccc
Confidence 65321 0125666779999999 48888999999999999854332 1466 9999999986 45667
Q ss_pred CCCceeecCCCCccceeecccc-----ceEEecCCCCCCcceEEecccccc------CCCC-eeEeecccCCCC------
Q 011804 260 GASGIMGLDRSPVSIITRTNTS-----YFSYCLPSPYGSTGYITFGKTDTV------NSKF-IKYTPIVTTSEQ------ 321 (477)
Q Consensus 260 ~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~------~~~~-~~~tpl~~~~~~------ 321 (477)
.++||||||++++|+++|+..+ .|||||++....+|.|+||+.|.. +.+. +.||||+.++..
T Consensus 150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~ 229 (413)
T 3vla_A 150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST 229 (413)
T ss_dssp TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence 8999999999999999998763 399999986556899999998753 4567 999999987532
Q ss_pred ----CeeEEEEEEEEEECCEEeecCCCccc-----CCCEEEeccccceeccHHHHHHHHHHHHHHhh--hcccccCCCcc
Q 011804 322 ----SEFYDIILTGISVGGKKLPFNTSYFT-----KFGAIIDSGNIITRLPPPIYAALRSAFHKRMK--KYKKAKGLEDL 390 (477)
Q Consensus 322 ----~~~y~v~l~gIsvgg~~l~~~~~~f~-----~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~--~~~~~~~~~~~ 390 (477)
..+|+|+|++|+||++.+.+++..|. .+++||||||++|+||+++|++|+++|.+++. .++...+. ..
T Consensus 230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-~~ 308 (413)
T 3vla_A 230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-AP 308 (413)
T ss_dssp TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC-TT
T ss_pred ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC-CC
Confidence 27999999999999999998877663 25899999999999999999999999999875 34444444 56
Q ss_pred ccceeeccCCcc----cccCeEEEEEcC-CcEEEEcCCCeEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEEC
Q 011804 391 LDTCYDLSAYET----VVVPKIAIHFLG-GVDLELDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDV 464 (477)
Q Consensus 391 ~~~Cy~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~ 464 (477)
++.||+.++... ..+|+|+|+|+| +++++|++++|+++.+.+..|++|...... .+.||||++|||++|+|||+
T Consensus 309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~ 388 (413)
T 3vla_A 309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDL 388 (413)
T ss_dssp CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEET
T ss_pred CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEEC
Confidence 789999876542 579999999965 489999999999987667899999876422 35799999999999999999
Q ss_pred CCCEEEEeeC
Q 011804 465 AGRRLGFGPG 474 (477)
Q Consensus 465 ~~~rIGFa~~ 474 (477)
+++|||||++
T Consensus 389 ~~~riGfa~~ 398 (413)
T 3vla_A 389 ATSRVGFSGT 398 (413)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=2.3e-59 Score=484.85 Aligned_cols=339 Identities=21% Similarity=0.351 Sum_probs=270.6
Q ss_pred ceeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 117 AFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 117 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+.+|+.. ++.+++|+++|.||||+|++.|+|||||+++||+|.+| .+|+||+.++|.++.|....
T Consensus 9 ~~~~pl~~-~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~~ 74 (403)
T 3aup_A 9 LVVLPVQN-DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRAN 74 (403)
T ss_dssp CEEEEEEE-CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHTT
T ss_pred cEEEeeec-CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCcc
Confidence 35677764 33459999999999999999999999999999999875 47999999999999998764
Q ss_pred cC------C-CCCCCCCCCCCcceecC-CCCeEeEeEEEEEEEEcccCCC-------ceeeecCeEEEEEecCC---CCC
Q 011804 197 ES------F-PFGNCNSKECPFNIQYA-DGSGSGGFWATDRITIQEANSN-------GYFTRYPFLLGCINNSS---GDK 258 (477)
Q Consensus 197 ~~------~-~~~~C~~~~c~y~~~Yg-dgs~~~G~~~~Dtltl~~~~~~-------~~v~~~~~~fG~~~~~~---g~~ 258 (477)
.+ . ....|.+..|.|.+.|+ ||+.+.|.+++|+|+|++.+++ ..++ ++.|||++... +.+
T Consensus 75 ~~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~--~~~Fg~~~~~~~~~~~~ 152 (403)
T 3aup_A 75 THQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVP--QFLFSCAPSFLVQKGLP 152 (403)
T ss_dssp CCCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEE--EEEEEEECGGGGSSSSS
T ss_pred ccCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCcccccccccccc--CEEEECCcccccccCCC
Confidence 32 0 11256666799999998 7888999999999999874321 2467 99999999863 444
Q ss_pred CCCCceeecCCCCccceeecccc-----ceEEecCCCCCCcceEEecccccc-C--C-C-----CeeEeecccCCCCCee
Q 011804 259 SGASGIMGLDRSPVSIITRTNTS-----YFSYCLPSPYGSTGYITFGKTDTV-N--S-K-----FIKYTPIVTTSEQSEF 324 (477)
Q Consensus 259 ~~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~-~--~-~-----~~~~tpl~~~~~~~~~ 324 (477)
...+||||||++++|+++|+... .|||||++.....|.|+||| |+. + . + ++.|+||+.++ ..+
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~~~ 229 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--QGE 229 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--TSC
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC--CCc
Confidence 57899999999999999998653 29999998655689999999 764 5 3 4 89999999854 368
Q ss_pred EEEEEEEEEECCEEe-ecCCCccc-----CCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeecc
Q 011804 325 YDIILTGISVGGKKL-PFNTSYFT-----KFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLS 398 (477)
Q Consensus 325 y~v~l~gIsvgg~~l-~~~~~~f~-----~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~ 398 (477)
|.|.|++|+||++.+ .++...+. .+++||||||++++||+++|++|+++|.+++..++..... ..++.||+
T Consensus 230 y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~c~~-- 306 (403)
T 3aup_A 230 YNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSV-APFGLCFN-- 306 (403)
T ss_dssp EEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCC-TTCSCEEC--
T ss_pred ceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCC-CCCCceEE--
Confidence 999999999999998 77665552 2579999999999999999999999998876554443333 34567875
Q ss_pred CCcccccCeEEEEEcCC--cEEEEcCCCeEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEECCCCEEEE----
Q 011804 399 AYETVVVPKIAIHFLGG--VDLELDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDVAGRRLGF---- 471 (477)
Q Consensus 399 ~~~~~~~P~i~~~f~gg--~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~~~~rIGF---- 471 (477)
|.....+|+|+|+|.|+ ++++|++++|+++...+..|++|+..+.. .+.||||++|||++|+|||++++||||
T Consensus 307 c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~ 386 (403)
T 3aup_A 307 SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSS 386 (403)
T ss_dssp GGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESSC
T ss_pred CCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEeccc
Confidence 44444799999999665 69999999999987656799999876432 357999999999999999999999999
Q ss_pred ---eeCCCC
Q 011804 472 ---GPGNCS 477 (477)
Q Consensus 472 ---a~~~C~ 477 (477)
++++|+
T Consensus 387 ~~~~~~~C~ 395 (403)
T 3aup_A 387 LHSHGVKCA 395 (403)
T ss_dssp GGGGTCCGG
T ss_pred ccccCCCcc
Confidence 777884
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.5e-57 Score=465.87 Aligned_cols=303 Identities=22% Similarity=0.367 Sum_probs=250.6
Q ss_pred eccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCC
Q 011804 122 ANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPF 201 (477)
Q Consensus 122 ~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 201 (477)
..+.++.+.+|+++|+||||||++.|+|||||+++||+|..|..|..+.++.|||++|+||+...
T Consensus 48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~--------------- 112 (370)
T 3psg_A 48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS--------------- 112 (370)
T ss_dssp CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE---------------
T ss_pred ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECC---------------
Confidence 34455677999999999999999999999999999999999986443556899999999999863
Q ss_pred CCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccc----
Q 011804 202 GNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI---- 274 (477)
Q Consensus 202 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl---- 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. | ..++||||||++.++.
T Consensus 113 -------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~----v~--~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 178 (370)
T 3psg_A 113 -------QELSITYGTGS-MTGILGYDTVQVGGIS----DT--NQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGAT 178 (370)
T ss_dssp -------EEEEEESSSCE-EEEEEEEEEEEETTEE----EE--EEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCC
T ss_pred -------cEEEEEeCCce-EEEEEEEEEEeeCCcc----cC--CeEEEEEEeecccccccCCccceeccCCccccccCCC
Confidence 78999999997 8999999999999875 88 9999999998762 3 3689999999988763
Q ss_pred --eeeccc------cceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCc
Q 011804 275 --ITRTNT------SYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSY 345 (477)
Q Consensus 275 --~sQ~~~------~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~ 345 (477)
+.++.. ..||+||.+.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+....
T Consensus 179 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~-- 252 (370)
T 3psg_A 179 PVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSG-- 252 (370)
T ss_dssp CHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTT--
T ss_pred CHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEEEecCC--
Confidence 222222 2299999987556899999999986 899999999998 6789999999999998775321
Q ss_pred ccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCe
Q 011804 346 FTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGT 425 (477)
Q Consensus 346 f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 425 (477)
...+||||||++++||++++++|.+++++. ....+ +|.++|.....+|+|+|+| ||+++.|++++|
T Consensus 253 --~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~~~~g-------~~~v~C~~~~~lP~i~f~~-~g~~~~l~~~~y 318 (370)
T 3psg_A 253 --GCQAIVDTGTSLLTGPTSAIANIQSDIGAS----ENSDG-------EMVISCSSIDSLPDIVFTI-DGVQYPLSPSAY 318 (370)
T ss_dssp --CEEEEECTTCCSEEEEHHHHHHHHHHTTCE----ECTTC-------CEECCGGGGGGCCCEEEEE-TTEEEEECHHHH
T ss_pred --CceEEEcCCCCcEECCHHHHHHHHHHhCCc----ccCCC-------cEEEECCCcccCCcEEEEE-CCEEEEECHHHh
Confidence 136999999999999999999999998653 12222 3777888777899999999 799999999999
Q ss_pred EEEeCCCeEEE-EEEecCC---CCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 426 LVVASVSQVCL-GFATYPP---DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 426 l~~~~~~~~Cl-~~~~~~~---~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+++ ....|+ +|...+. .++.||||++|||++|+|||++++|||||+++
T Consensus 319 i~~--~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 319 ILQ--DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EEE--CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ccc--CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 998 345798 6776431 23479999999999999999999999999974
No 4
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=5.9e-57 Score=463.46 Aligned_cols=329 Identities=22% Similarity=0.442 Sum_probs=262.6
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCcccccccc
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRE 197 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 197 (477)
..+|+.. ++.+.+|+++|+|||| |+|||||+++||+|.+|. +|+.++|.++.|.....
T Consensus 3 ~~~pv~~-~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~~ 60 (381)
T 1t6e_X 3 VLAPVTK-DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLANA 60 (381)
T ss_dssp EEEEEEE-CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHHS
T ss_pred eEEeEEe-cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhccccC
Confidence 3456654 3455999999999998 999999999999998651 36678888888876533
Q ss_pred CCCCCCCCC---------CCC-CcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCe----EEEEEecC--CCCCCCC
Q 011804 198 SFPFGNCNS---------KEC-PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPF----LLGCINNS--SGDKSGA 261 (477)
Q Consensus 198 ~~~~~~C~~---------~~c-~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~----~fG~~~~~--~g~~~~~ 261 (477)
+ +...|+. ..| .|.++|+||+.+.|++++|+|+|++.+++..++ ++ .|||++.+ .+++...
T Consensus 61 ~-~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~--~~~~~~~Fg~~~~~~~~~~~~~~ 137 (381)
T 1t6e_X 61 Y-PAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVS--KVNVGVLAACAPSKLLASLPRGS 137 (381)
T ss_dssp S-CCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEE--EEEEEEEEEECCGGGGTTSCTTE
T ss_pred C-CCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCcccc--ceeeeeEeecCcccccCCCCCCC
Confidence 2 1124542 357 499999999878999999999998643222455 54 67999886 4555689
Q ss_pred CceeecCCCCccceeecccc-----ceEEecCCCCCCcceEEecccccc---CCCCeeEeecccCCCCCeeEEEEEEEEE
Q 011804 262 SGIMGLDRSPVSIITRTNTS-----YFSYCLPSPYGSTGYITFGKTDTV---NSKFIKYTPIVTTSEQSEFYDIILTGIS 333 (477)
Q Consensus 262 ~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~---~~~~~~~tpl~~~~~~~~~y~v~l~gIs 333 (477)
+||||||++++|+++|+..+ .|||||++. ..|.|+|||.|.. +.+++.|+|++.++..+ +|+|.|++|+
T Consensus 138 dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~-~y~v~l~~i~ 214 (381)
T 1t6e_X 138 TGVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSP-AHYISARSIV 214 (381)
T ss_dssp EEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCC-SCEECEEEEE
T ss_pred ceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCCc-ceEEEEEEEE
Confidence 99999999999999998753 299999875 5799999998752 57899999999865433 5679999999
Q ss_pred ECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhh-------hcccc-cCCCccccceeeccCCcc---
Q 011804 334 VGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMK-------KYKKA-KGLEDLLDTCYDLSAYET--- 402 (477)
Q Consensus 334 vgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~-------~~~~~-~~~~~~~~~Cy~~~~~~~--- 402 (477)
||++.+.++...|..+++||||||++++||+++|++|+++|.+++. .+++. ... ..++.||+.++...
T Consensus 215 vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~C~~~~~~~~~~~ 293 (381)
T 1t6e_X 215 VGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAV-APFGVCYDTKTLGNNLG 293 (381)
T ss_dssp ETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCC-TTCSCEEEGGGCCEETT
T ss_pred EcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCC-CCCCccCCCCCCccccc
Confidence 9999998887777557899999999999999999999999999874 23332 222 45689998875432
Q ss_pred -cccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEEEecCC------CCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 403 -VVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPP------DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 403 -~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~~~------~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
..+|+|+|+|+||++++|++++|+++...+..|++|+.... ..+.||||++|||++|+|||++++|||||++.
T Consensus 294 ~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 294 GYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp EECCCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CCcCCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 47899999997679999999999998755779999987643 13579999999999999999999999999864
No 5
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-56 Score=455.16 Aligned_cols=301 Identities=24% Similarity=0.391 Sum_probs=247.2
Q ss_pred CCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccccCCCCC
Q 011804 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (477)
Q Consensus 125 ~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 202 (477)
.++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 18 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------------- 79 (351)
T 1tzs_A 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKT--HSRFQPSQSSTYSQPG---------------- 79 (351)
T ss_dssp GGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT--SCCBCGGGCTTCBCCS----------------
T ss_pred eecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCC--CCcCCcccCcceEECC----------------
Confidence 3445689999999999999999999999999999999998 4864 4899999999998852
Q ss_pred CCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccc-----
Q 011804 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI----- 274 (477)
Q Consensus 203 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl----- 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. | ...+||||||++.++.
T Consensus 80 ------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 146 (351)
T 1tzs_A 80 ------QSFSIQYGTGS-LSGIIGADQVSVEGLT----VV--GQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTP 146 (351)
T ss_dssp ------CEEEEESSSCE-EEEEEEEEEEEETTEE----EE--EEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCC
T ss_pred ------CEEEEEeCCCC-eEEEEEEeEEEECCeE----EC--CeEEEEEEeccccccccCCCceEEecCCccccccCCCc
Confidence 78999999997 8999999999998765 78 9999999988662 2 3689999999998763
Q ss_pred -eeeccc------cceEEecCCCCCC--cceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCC
Q 011804 275 -ITRTNT------SYFSYCLPSPYGS--TGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTS 344 (477)
Q Consensus 275 -~sQ~~~------~~FS~cL~~~~~~--~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~ 344 (477)
+.|+.. ..||+||.+.... .|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+....
T Consensus 147 ~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~- 221 (351)
T 1tzs_A 147 VFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQVGGTVMFCSE- 221 (351)
T ss_dssp HHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEETTEEEECTT-
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEECCceEEcCC-
Confidence 222322 2299999987543 799999999976 889999999987 5799999999999998864221
Q ss_pred cccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCC
Q 011804 345 YFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRG 424 (477)
Q Consensus 345 ~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 424 (477)
..++||||||++++||+++|++|.+++++. +. . +. |.++|.....+|+|+|+| +|++++|++++
T Consensus 222 ---~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~-~-g~-------~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~ 285 (351)
T 1tzs_A 222 ---GCQAIVDTGTSLITGPSDKIKQLQNAIGAA---PV-D-GE-------YAVECANLNVMPDVTFTI-NGVPYTLSPTA 285 (351)
T ss_dssp ---CEEEEECTTCSSEEECHHHHHHHHHHHTCE---EC-S-SS-------EEECGGGGGGSCCEEEEE-TTEEEEECTTT
T ss_pred ---CceEEeccCCcceeCCHHHHHHHHHHhCCc---cc-C-Ce-------EEEeCCCCccCCcEEEEE-CCEEEEECHHH
Confidence 136999999999999999999999998653 11 1 33 455565556799999999 78999999999
Q ss_pred eEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 425 TLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 425 ~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
|+++.. +...|+ +|...+ ...+.||||++|||++|++||++++|||||+++|.
T Consensus 286 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 286 YTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp SEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred hEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 998753 245899 687653 13567999999999999999999999999999984
No 6
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=1.2e-56 Score=457.91 Aligned_cols=310 Identities=25% Similarity=0.346 Sum_probs=255.6
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC---CccCCCCCCccCCCCCccceecCCCccccc
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPFFYASKSKTFFKIPCNSTSCRI 194 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 194 (477)
..+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 8 ~~~~l~--~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~-------- 75 (361)
T 1mpp_A 8 DTPGLY--DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVG--KRFFDPSSSSTFKETD-------- 75 (361)
T ss_dssp EEEEEE--ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCS--SCCBCGGGCTTCEEEE--------
T ss_pred ceEEee--cCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCC--CCcCCCccCCceEecC--------
Confidence 345654 345599999999999999999999999999999999998 5965 4899999999999863
Q ss_pred cccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC------CC--CCCCceee
Q 011804 195 LRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG------DK--SGASGIMG 266 (477)
Q Consensus 195 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g------~~--~~~~GilG 266 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||
T Consensus 76 --------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~~~~~~~~~~~~~~~~GilG 134 (361)
T 1mpp_A 76 --------------YNLNITYGTGG-ANGIYFRDSITVGGAT----VK--QQTLAYVDNVSGPTAEQSPDSELFLDGIFG 134 (361)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEEESGGGSSCTTCSSCCCEEEE
T ss_pred --------------CeEEEEECCce-EEEEEEEEEEEECCEE----Ee--ceEEEEEEeccCccccccccccCCCCCEEE
Confidence 78999999997 8999999999999765 88 999999998765 33 36899999
Q ss_pred cCCCCcccee------------ecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEE
Q 011804 267 LDRSPVSIIT------------RTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDI 327 (477)
Q Consensus 267 Lg~~~~Sl~s------------Q~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v 327 (477)
||++.++... |+..+ .||+||.+. ...|.|+|||+|+. +.+++.|+|+........+|.|
T Consensus 135 Lg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v 213 (361)
T 1mpp_A 135 AAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDA 213 (361)
T ss_dssp CSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEE
T ss_pred eCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEE
Confidence 9998776432 33222 299999986 45799999999976 7899999999985432348999
Q ss_pred EEEEEEECCEEeecCCCcccCCCEE-EeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCccccc-
Q 011804 328 ILTGISVGGKKLPFNTSYFTKFGAI-IDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVV- 405 (477)
Q Consensus 328 ~l~gIsvgg~~l~~~~~~f~~g~~i-iDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~- 405 (477)
.|++|+|+++.+..+. ..++| |||||++++||+++|++|++++.+. ++...+. |.++|.....+
T Consensus 214 ~l~~i~v~~~~~~~~~----~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g~-------~~~~C~~~~~~~ 279 (361)
T 1mpp_A 214 PVTGVKIDGSDAVSFD----GAQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQG-------YTVPCSKYQDSK 279 (361)
T ss_dssp EEEEEEETTEEEEEEE----EEEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETTE-------EEEEHHHHTTCC
T ss_pred EEeEEEECCeeeccCC----CCEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCCc-------EEEECCCcccCC
Confidence 9999999998875321 13699 9999999999999999999998764 3333332 44445444567
Q ss_pred CeEEEEEc-C-----CcEEEEcCCCeEEEeC-CCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 406 PKIAIHFL-G-----GVDLELDVRGTLVVAS-VSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 406 P~i~~~f~-g-----g~~~~l~~~~~l~~~~-~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
|+|+|+|. + |+++.|++++|+++.. ....|+ +|.+. ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 280 p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~--~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~ 357 (361)
T 1mpp_A 280 TTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD--GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 357 (361)
T ss_dssp CEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE--SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred CcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC--CCCCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence 99999994 4 8999999999999874 356898 88875 3457999999999999999999999999999995
No 7
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=3.1e-56 Score=449.31 Aligned_cols=297 Identities=24% Similarity=0.338 Sum_probs=246.3
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|..|..+.++.|||++|+||+.++|
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~-------------------- 72 (329)
T 3c9x_A 13 ADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSG-------------------- 72 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTT--------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCC--------------------
Confidence 458999999999999999999999999999999999987767779999999999998641
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCcccee--------
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSIIT-------- 276 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~s-------- 276 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.| ...+||||||++.++.++
T Consensus 73 -~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~ 145 (329)
T 3c9x_A 73 -ASWSISYGDGSSSSGDVYTDKVTIGGFS----VN--TQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWF 145 (329)
T ss_dssp -CBEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHH
T ss_pred -CeEEEEeCCCCcEEEEEEEEEEEECCEE----Ec--ceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHH
Confidence 7999999999889999999999999765 88 99999999876533 378999999998877543
Q ss_pred -----eccccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 277 -----RTNTSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 277 -----Q~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
|+....||+||.+. ..|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+|+++.+. ... .+
T Consensus 146 ~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~--~~~---~~ 215 (329)
T 3c9x_A 146 SNAASSLAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKLN--RNS---ID 215 (329)
T ss_dssp HHHHTTSSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCCC--SCC---EE
T ss_pred HHHHHhcCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEecc--CCC---ce
Confidence 22223399999874 4799999999976 8899999999852 5689999999999998653 222 36
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS 430 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~ 430 (477)
+||||||++++||+++|++|.+++..+. +....+. |.++|. ..+|+|+|+| +|+++.||+++|++...
T Consensus 216 aiiDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~~-------~~~~C~--~~~P~i~f~f-~g~~~~ip~~~~~~~~~ 283 (329)
T 3c9x_A 216 GIADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQEG-------VVFDCD--EDLPSFSFGV-GSSTITIPGDLLNLTPL 283 (329)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTCTTCE--EETTTTE-------EEEETT--CCCCCEEEEE-TTEEEEECGGGGEEEES
T ss_pred EEEECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCCE-------EEEECC--CCCCcEEEEE-CCEEEEECHHHeeeecc
Confidence 9999999999999999999998874321 2222222 444555 3689999999 68999999999998763
Q ss_pred --CCeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeC
Q 011804 431 --VSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 474 (477)
Q Consensus 431 --~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~ 474 (477)
....|++ |.... ..+.||||++|||++|++||++++|||||+.
T Consensus 284 ~~~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 284 EEGSSTCFGGLQSSS-GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp STTCSEEEESEEECT-TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEEEEEcCC-CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 2478995 66553 3568999999999999999999999999974
No 8
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=4.5e-56 Score=448.11 Aligned_cols=301 Identities=21% Similarity=0.396 Sum_probs=251.7
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
++|+.. +.+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+ +.|||++|+||+...
T Consensus 4 ~~~l~~--~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~---------- 69 (329)
T 1dpj_A 4 DVPLTN--YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKANG---------- 69 (329)
T ss_dssp EEECEE--ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE----------
T ss_pred ceeeee--cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc--CcCCcccCcCeEECC----------
Confidence 455542 345899999999999999999999999999999999987 8654 799999999998842
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-C--CCCCCceeecCCCCcc
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-D--KSGASGIMGLDRSPVS 273 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~--~~~~~GilGLg~~~~S 273 (477)
|.|.+.|++| .+.|.+++|+|+|++.. ++ ++.|||++...+ . ....+||||||+..++
T Consensus 70 ------------~~~~i~Yg~G-s~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s 130 (329)
T 1dpj_A 70 ------------TEFAIQYGTG-SLEGYISQDTLSIGDLT----IP--KQDFAEATSEPGLTFAFGKFDGILGLGYDTIS 130 (329)
T ss_dssp ------------EEEEEEETTE-EEEEEEEEEEEEETTEE----EE--EEEEEEEEECCHHHHTTCSCSEEEECSCGGGC
T ss_pred ------------cEEEEEECCc-eEEEEEEEEEEEECCeE----EC--CeEEEEEEecCccccccCCcceEEEeCCchhh
Confidence 7899999999 58999999999998765 78 999999998765 2 2368999999999876
Q ss_pred ce----------ee--ccccceEEecCCCCC---CcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCE
Q 011804 274 II----------TR--TNTSYFSYCLPSPYG---STGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGK 337 (477)
Q Consensus 274 l~----------sQ--~~~~~FS~cL~~~~~---~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~ 337 (477)
+. +| +....||+||.+... ..|.|+|||+|+. +.+++.|+|+.. +.+|.|.|++|+|+++
T Consensus 131 ~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~ 206 (329)
T 1dpj_A 131 VDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLGDE 206 (329)
T ss_dssp GGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTE
T ss_pred ccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEEECCe
Confidence 43 23 112239999987532 4799999999976 788999999987 5789999999999999
Q ss_pred EeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcE
Q 011804 338 KLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVD 417 (477)
Q Consensus 338 ~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~ 417 (477)
.+... ..++||||||++++||+++|++|.+++++. ... +.||.++|.....+|+|+|+| +|++
T Consensus 207 ~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~-------~g~~~~~C~~~~~~P~i~f~f-~g~~ 269 (329)
T 1dpj_A 207 YAELE-----SHGAAIDTGTSLITLPSGLAEMINAEIGAK----KGW-------TGQYTLDCNTRDNLPDLIFNF-NGYN 269 (329)
T ss_dssp EEECS-----SCEEEECTTCSCEEECHHHHHHHHHHHTCE----ECT-------TSSEEECGGGGGGCCCEEEEE-TTEE
T ss_pred EecCC-----CccEEeeCCCCcEECCHHHHHHHHHHhCCc----cCC-------CCeEEEECCCCCcCCcEEEEE-CCEE
Confidence 87532 246999999999999999999999998642 111 235778888777899999999 6899
Q ss_pred EEEcCCCeEEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 418 LELDVRGTLVVASVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 418 ~~l~~~~~l~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++|++++|+++.. ..|+ +|.... ...+.||||++|||++|++||++++|||||+++
T Consensus 270 ~~i~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 270 FTIGPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EEECTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 9999999999874 6899 787652 235689999999999999999999999999874
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=4.3e-56 Score=447.31 Aligned_cols=300 Identities=21% Similarity=0.381 Sum_probs=251.1
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |.. ++.|||++|+||+...
T Consensus 3 ~~~l~--n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------- 68 (324)
T 1am5_A 3 TEQMK--NEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSN--HNKFKPRQSSTYVETG---------- 68 (324)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHT--SCCBCGGGCTTCEEEE----------
T ss_pred eeeee--cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccC--CCcCCCccCCCeEeCC----------
Confidence 34544 3456899999999999999999999999999999999984 865 4899999999999863
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCcc
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVS 273 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~S 273 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++.++
T Consensus 69 ------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 129 (324)
T 1am5_A 69 ------------KTVDLTYGTGG-MRGILGQDTVSVGGGS----DP--NQELGESQTEPGPFQAAAPFDGILGLAYPSIA 129 (324)
T ss_dssp ------------EEEEEECSSCE-EEEEEEEEEEESSSSC----EE--EEEEEEEEECCSTTTTTCSSSEEEECSCGGGC
T ss_pred ------------cEEEEEECCCC-eEEEEEECceeECCcE----Ec--ccEEEEEEecccccccCCCCceEEecCCcccc
Confidence 78999999997 5999999999999875 88 999999998866 33 368999999999876
Q ss_pred ce------eeccc------cceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEee
Q 011804 274 II------TRTNT------SYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340 (477)
Q Consensus 274 l~------sQ~~~------~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~ 340 (477)
.. .|+.. ..||+||++.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 130 ~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 205 (324)
T 1am5_A 130 AAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAA 205 (324)
T ss_dssp GGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEECC
T ss_pred ccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCceee
Confidence 43 22222 2299999987556899999999976 889999999987 5789999999999998754
Q ss_pred cCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEE
Q 011804 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLEL 420 (477)
Q Consensus 341 ~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l 420 (477)
.+. ..+||||||++++||+++|++|.+++.+. ...+. |.++|.....+|+|+|+| +|++++|
T Consensus 206 ~~~-----~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~g~-------~~~~C~~~~~~P~i~f~f-~g~~~~i 267 (324)
T 1am5_A 206 CEG-----CQAIVDTGTSKIVAPVSALANIMKDIGAS-----ENQGE-------MMGNCASVQSLPDITFTI-NGVKQPL 267 (324)
T ss_dssp CCC-----EEEEECTTCSSEEECTTTHHHHHHHHTCE-----ECCCC-------EECCTTSSSSSCCEEEEE-TTEEEEE
T ss_pred ccC-----ceEEEecCCccEECCHHHHHHHHHHhCCc-----ccCCc-------EEEeCCCcccCCcEEEEE-CCEEEEE
Confidence 221 46999999999999999999999998653 12222 555666666899999999 7899999
Q ss_pred cCCCeEEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 421 DVRGTLVVASVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 421 ~~~~~l~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++++|+++. +..|+ +|...+ ...+.||||++|||++|++||++++|||||+++
T Consensus 268 ~~~~y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 268 PPSAYIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp CHHHHEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred CHHHhcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 999999887 66899 787653 134689999999999999999999999999974
No 10
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=3.3e-56 Score=449.99 Aligned_cols=296 Identities=20% Similarity=0.305 Sum_probs=246.3
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecC--CCCC---------ccCCCCCCccCCCCCccceec
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK--PCIH---------CFQQRDPFFYASKSKTFFKIP 186 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~--~C~~---------C~~~~~~~fdps~SsT~~~~~ 186 (477)
+.+|+... +.+|+++|.||||+|++.|+|||||+++||+|. +|.. |. .++.|||++|+||+...
T Consensus 3 ~~~~l~~~---~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~~~ 77 (334)
T 1j71_A 3 VPTTLINE---GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCK--QEGTFDPSSSSSAQNLN 77 (334)
T ss_dssp EEEEEEEC---SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGG--SSCCBCGGGCTTCEEEE
T ss_pred eeEEEecC---CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCccccccccccc--CCCcCCcccCCCcccCC
Confidence 45666542 589999999999999999999999999999865 6753 54 45899999999999863
Q ss_pred CCCccccccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceee
Q 011804 187 CNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMG 266 (477)
Q Consensus 187 C~s~~C~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilG 266 (477)
|.|.+.|+||+.+.|.+++|+|+|++.. ++ ++.|||++... ..+||||
T Consensus 78 ----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~----~~--~~~fg~~~~~~----~~~GilG 125 (334)
T 1j71_A 78 ----------------------QDFSIEYGDLTSSQGSFYKDTVGFGGIS----IK--NQQFADVTTTS----VDQGIMG 125 (334)
T ss_dssp ----------------------EEEEEEBTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEES----SSSCEEE
T ss_pred ----------------------CceEEEECCCCEEEEEEEEEEEEECCEE----Ec--cEEEEEEEecC----CCccEEE
Confidence 7899999999888999999999999764 78 99999999874 6899999
Q ss_pred cCCCCc--------cceeecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEE
Q 011804 267 LDRSPV--------SIITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTG 331 (477)
Q Consensus 267 Lg~~~~--------Sl~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~g 331 (477)
||++.+ +++.|+..+ .||+||.+.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++
T Consensus 126 Lg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~ 201 (334)
T 1j71_A 126 IGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS----SVELRVHLGS 201 (334)
T ss_dssp CSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC----SSSCEEEEEE
T ss_pred EcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccC----CCeEEEEEeE
Confidence 999875 445555433 299999976556899999999976 788999999987 4589999999
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceee-ccCCcccccCeEEE
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYD-LSAYETVVVPKIAI 410 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~-~~~~~~~~~P~i~~ 410 (477)
|+|+++.+..+ .++||||||++++||+++|++|.+++.+.+ ....+. |. ++|.. +|+|+|
T Consensus 202 i~v~g~~~~~~------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~---~~~~~~-------~~~~~C~~---~p~i~f 262 (334)
T 1j71_A 202 INFDGTSVSTN------ADVVLDSGTTITYFSQSTADKFARIVGATW---DSRNEI-------YRLPSCDL---SGDAVF 262 (334)
T ss_dssp EEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEE---ETTTTE-------EECSSSCC---CSEEEE
T ss_pred EEECCEeccCC------ccEEEeCCCCcEecCHHHHHHHHHHcCCcc---cCCCce-------EEEEcCCC---CCceEE
Confidence 99999987642 359999999999999999999999998753 211112 33 44442 799999
Q ss_pred EEcCCcEEEEcCCCeEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 411 HFLGGVDLELDVRGTLVVASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 411 ~f~gg~~~~l~~~~~l~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+|.||++++|++++|+++...+..|+ +|... +.||||++|||++|++||++++|||||+++|+
T Consensus 263 ~f~~g~~~~i~~~~y~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 263 NFDQGVKITVPLSELILKDSDSSICYFGISRN----DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp EESTTCEEEEEGGGGEEECSSSSCEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred EEcCCcEEEECHHHheeecCCCCeeEEEEeEC----CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 99778999999999999865444698 45543 35999999999999999999999999999995
No 11
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=2e-56 Score=449.59 Aligned_cols=300 Identities=20% Similarity=0.344 Sum_probs=248.2
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 5 ~~~l~--n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------- 70 (323)
T 3cms_A 5 SVPLT--NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKN--HQRFDPRKSSTFQNLG---------- 70 (323)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT--SCCBCGGGCTTCEEEE----------
T ss_pred eeeeE--eccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccC--CCCCCCccCCCeEECC----------
Confidence 34544 345699999999999999999999999999999999995 4864 4799999999999863
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCcc
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVS 273 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~S 273 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++.++
T Consensus 71 ------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 131 (323)
T 3cms_A 71 ------------KPLSIHYGTGS-MQGILGYDTVTVSNIV----DI--QQTVGLSTQEPGDFFTYAEFDGILGMAYPSLA 131 (323)
T ss_dssp ------------EEEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEECCSHHHHHSSCSEEEECSCGGGS
T ss_pred ------------cEEEEEeCCCC-eEEEEEEEEEEECCeE----Ee--ccEEEEEEecccccccccCCceEEecCcchhh
Confidence 78999999997 8999999999998765 78 999999998865 23 368999999998776
Q ss_pred ce----------eecc--ccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEee
Q 011804 274 II----------TRTN--TSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340 (477)
Q Consensus 274 l~----------sQ~~--~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~ 340 (477)
.. +|.. ...||+||++.... |.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 132 ~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~-G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 206 (323)
T 3cms_A 132 SEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE-SMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVVVA 206 (323)
T ss_dssp CTTCCCHHHHHHHTTCSSSSEEEEECCTTSSC-EEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEEE
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEECCCCCC-EEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCEEee
Confidence 32 3321 12299999986443 99999999976 788999999987 5789999999999999876
Q ss_pred cCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEE
Q 011804 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLEL 420 (477)
Q Consensus 341 ~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l 420 (477)
++.. .++||||||++++||+++|++|.+++.+. ....+. |.++|.....+|+|+|+| +|++++|
T Consensus 207 ~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~~~g~-------~~~~C~~~~~~P~i~f~f-~g~~~~i 270 (323)
T 3cms_A 207 CEGG----CQAILDTGTSKLVGPSSDILNIQQAIGAT----QNQYGE-------FDIDCDNLSYMPTVVFEI-NGKMYPL 270 (323)
T ss_dssp STTC----EEEEECTTCCSEEECHHHHHHHHHHHTCE----EETTTE-------EEECTTCTTTSCCEEEEE-TTEEEEE
T ss_pred cCCC----cEEEEecCCccEeCCHHHHHHHHHHhCCe----ecCCCc-------EEEECCCCccCceEEEEE-CCEEEEE
Confidence 4321 36999999999999999999999998643 222222 556666656799999999 7899999
Q ss_pred cCCCeEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 421 DVRGTLVVASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 421 ~~~~~l~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++++|+++ .+..|+ +|...+ ..+.||||++|||++|++||++++|||||+++
T Consensus 271 ~~~~y~~~--~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 271 TPSAYTSQ--DQGFCTSGFQSEN-HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp CHHHHEEE--ETTEEEESEEEC----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhccC--CCCEEEEEEEeCC-CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 99999988 367899 687653 34679999999999999999999999999874
No 12
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.4e-55 Score=446.21 Aligned_cols=300 Identities=23% Similarity=0.390 Sum_probs=252.1
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeee-----cCCCCCccCCCCCCccCCCCCccceecCCCccc
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQ-----CKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSC 192 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~-----c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C 192 (477)
+.+|+... +.+|+++|.||||+|++.|+|||||+++||+ |.+|..|.. ++.|||++|+||+...
T Consensus 3 i~~~l~~~---~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~------ 71 (339)
T 3fv3_A 3 ISLSLINE---GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKS--SGTFTPSSSSSYKNLG------ 71 (339)
T ss_dssp EEEEEEEC---SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTT--TCCBCGGGCTTCEEEE------
T ss_pred eeeEEEcC---CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCC--CCcCCCccCcceeeCC------
Confidence 46666643 4899999999999999999999999999997 777777864 4899999999999874
Q ss_pred cccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCCCCc
Q 011804 193 RILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPV 272 (477)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~~~~ 272 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+ .+||||||++.+
T Consensus 72 ----------------~~~~i~Yg~gs~~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~~----~~GilGLg~~~~ 125 (339)
T 3fv3_A 72 ----------------AAFTIRYGDGSTSQGTWGKDTVTINGVS----IT--GQQIADVTQTSV----DQGILGIGYTSN 125 (339)
T ss_dssp ----------------EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEESS----SSCEEECSCGGG
T ss_pred ----------------ceEEEEECCCceEEEEEEEEEEEECCEE----EC--ceEEEEEEecCC----CceeEEecCccc
Confidence 7899999999889999999999999875 88 999999998864 699999999876
Q ss_pred c----------------ceeeccccc------eEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEE
Q 011804 273 S----------------IITRTNTSY------FSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIIL 329 (477)
Q Consensus 273 S----------------l~sQ~~~~~------FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l 329 (477)
+ ++.|+..+. ||+||.+.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l 201 (339)
T 3fv3_A 126 EAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTS----SQALTISL 201 (339)
T ss_dssp CCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCC----SSSCEEEE
T ss_pred cccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEeccc----CccEEEEE
Confidence 4 444554332 99999987666899999999976 889999999988 45899999
Q ss_pred EEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEE
Q 011804 330 TGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIA 409 (477)
Q Consensus 330 ~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~ 409 (477)
++|+|+++.+... .++||||||++++||+++|++|.+++.+.........+. |.++|.. ..+|+|+
T Consensus 202 ~~i~v~g~~~~~~------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~C~~-~~~p~i~ 267 (339)
T 3fv3_A 202 ASVNLKGSSFSFG------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYL-------YFIDCNT-DTSGTTV 267 (339)
T ss_dssp EEEEESSCEEEEE------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEE-------EEECTTC-CCCSEEE
T ss_pred EEEEECCEeecCC------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCce-------EEEecCC-CCCCcEE
Confidence 9999999987642 359999999999999999999999998652211112222 4555654 4689999
Q ss_pred EEEcCCcEEEEcCCCeEEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 410 IHFLGGVDLELDVRGTLVVASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 410 ~~f~gg~~~~l~~~~~l~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
|+|.+|++++|++++|+++.. +..|+ +|.+ .+.||||++|||++|++||++++|||||+++|+
T Consensus 268 f~f~~g~~~~v~~~~~~~~~~-~~~C~~~i~~----~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 268 FNFGNGAKITVPNTEYVYQNG-DGTCLWGIQP----SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp EEETTSCEEEEEGGGGEEECS-SSCEEESEEE----CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EEECCCCEEEECHHHheeeCC-CCeEEEEEEe----CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 999668999999999998864 45785 7776 246999999999999999999999999999995
No 13
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=6.6e-56 Score=449.20 Aligned_cols=299 Identities=22% Similarity=0.324 Sum_probs=246.7
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecC--CCCC---------ccCCCCCCccCCCCCccceec
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK--PCIH---------CFQQRDPFFYASKSKTFFKIP 186 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~--~C~~---------C~~~~~~~fdps~SsT~~~~~ 186 (477)
+.+|+.. .+.+|+++|.||||+|++.|+|||||+++||+|. +|.. |. .++.|||++|+||+...
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~~~ 77 (342)
T 2qzx_A 3 VAVTLHN---EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCK--SAGSYSPASSRTSQNLN 77 (342)
T ss_dssp EEEEEEE---CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGG--TTCCBCGGGCTTCEEEE
T ss_pred eeEEEec---CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCcccccc--CCCcCCcccCCCcccCC
Confidence 4555553 2489999999999999999999999999999865 6752 54 45899999999999863
Q ss_pred CCCccccccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceee
Q 011804 187 CNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMG 266 (477)
Q Consensus 187 C~s~~C~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilG 266 (477)
|.|.+.|+||+.+.|.+++|+|+|++.. ++ ++.|||++... ..+||||
T Consensus 78 ----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~----~~~GilG 125 (342)
T 2qzx_A 78 ----------------------TRFDIKYGDGSYAKGKLYKDTVGIGGVS----VR--DQLFANVWSTS----ARKGILG 125 (342)
T ss_dssp ----------------------EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEEC----SSSCEEE
T ss_pred ----------------------CcEEEEeCCCCeEEEEEEEEEEEECCEE----ec--ceEEEEEEecC----CCcCEEE
Confidence 7899999999888999999999999764 78 99999999874 6899999
Q ss_pred cCCCCc--------cceeecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEE
Q 011804 267 LDRSPV--------SIITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTG 331 (477)
Q Consensus 267 Lg~~~~--------Sl~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~g 331 (477)
||+..+ +++.|+..+ .||+||++.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++
T Consensus 126 Lg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~ 201 (342)
T 2qzx_A 126 IGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVGLRS 201 (342)
T ss_dssp CSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEE
T ss_pred EccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccC----CceEEEEEeE
Confidence 999865 444555433 299999976556899999999976 889999999987 4589999999
Q ss_pred EEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEE
Q 011804 332 ISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIH 411 (477)
Q Consensus 332 Isvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~ 411 (477)
|+|+++.+..+ .++||||||++++||+++|++|++++.+.+. +....+ ..|.++|.. +|+|+|+
T Consensus 202 i~v~g~~~~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~------~~~~~~C~~---~p~i~f~ 265 (342)
T 2qzx_A 202 VNVRGRNVDAN------TNVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGN------KVYVADCKT---SGTIDFQ 265 (342)
T ss_dssp EEETTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSC------EEEEECTTC---CCEEEEE
T ss_pred EEECCEecCCC------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCC------cEEEEECCC---CCcEEEE
Confidence 99999987642 3599999999999999999999999976532 111111 125566653 7999999
Q ss_pred EcCCcEEEEcCCCeEEEe-----CCCeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 412 FLGGVDLELDVRGTLVVA-----SVSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 412 f~gg~~~~l~~~~~l~~~-----~~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
|.||++++|++++|+++. +....|++ |... +.||||++|||++|++||++++|||||+++|+
T Consensus 266 f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 266 FGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRES----EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp ETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEEC----SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred ECCCcEEEEcHHHhcccccccCCCCCCccEEEEecC----CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 977899999999999874 22468984 5443 35999999999999999999999999999995
No 14
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=5.9e-56 Score=447.28 Aligned_cols=296 Identities=23% Similarity=0.327 Sum_probs=244.3
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|..|.. .++.|||++|+||+.++|
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~~-------------------- 71 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLSG-------------------- 71 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEEE--------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecCC--------------------
Confidence 45899999999999999999999999999999999998765 668999999999998642
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCcccee--------
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSIIT-------- 276 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~s-------- 276 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.| ...+||||||++.++.+.
T Consensus 72 -~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~ 144 (329)
T 1oew_A 72 -ATWSISYGDGSSSSGDVYTDTVSVGGLT----VT--GQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFF 144 (329)
T ss_dssp -EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHH
T ss_pred -CeEEEEeCCCCcEEEEEEEEEEEECCEE----Ee--eeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHH
Confidence 7899999999889999999999999865 88 99999999876533 378999999998876542
Q ss_pred -----eccccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 277 -----RTNTSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 277 -----Q~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
|+....||+||.+. ..|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+|+++.+.. .. .+
T Consensus 145 ~~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~~--~~---~~ 214 (329)
T 1oew_A 145 DNAKASLDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFKS--TS---ID 214 (329)
T ss_dssp HHHTTTSSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCEE--EE---EE
T ss_pred HHHHHhccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeeccC--CC---ce
Confidence 22223399999874 4799999999976 8899999999852 56899999999999986641 11 36
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEe-
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA- 429 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~- 429 (477)
+||||||++++||+++|++|.+++..+. +....+. |.++|. ..+|+|+|+| ||++++||+++|++..
T Consensus 215 aiiDSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g~-------~~~~C~--~~~P~i~f~f-gg~~~~ip~~~~~~~~~ 282 (329)
T 1oew_A 215 GIADTGTTLLYLPATVVSAYWAQVSGAK--SSSSVGG-------YVFPCS--ATLPSFTFGV-GSARIVIPGDYIDFGPI 282 (329)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-------EEEETT--CCCCCEEEEE-TTEEEEECHHHHEEEES
T ss_pred EEEeCCCCCEECCHHHHHHHHHhCCCcE--EcCCCCE-------EEEECC--CCCCcEEEEE-CCEEEEECHHHeeeeec
Confidence 9999999999999999999998874321 2222222 444555 3689999999 8999999999999875
Q ss_pred C-CCeEEEE-EEecCCCCCeeeechhhhcceEEEEEC-CCCEEEEeeC
Q 011804 430 S-VSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDV-AGRRLGFGPG 474 (477)
Q Consensus 430 ~-~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~-~~~rIGFa~~ 474 (477)
+ ....|++ |...+ ..+.||||++|||++|+|||+ +++|||||+.
T Consensus 283 ~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 283 STGSSSCFGGIQSSA-GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp STTCSEEEESEEEST-TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred CCCCCeEEEEEEeCC-CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 2 3478995 66553 456899999999999999999 9999999974
No 15
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=7.6e-56 Score=445.74 Aligned_cols=294 Identities=20% Similarity=0.335 Sum_probs=243.7
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|..| .+.++.|||++|+||+...
T Consensus 13 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~~~--------------------- 70 (325)
T 2apr_A 13 NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQADG--------------------- 70 (325)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEEEE---------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeeeCC---------------------
Confidence 359999999999999999999999999999999999998 6778999999999998842
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCC--CCCceeecCCCCccc-------eeec
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKS--GASGIMGLDRSPVSI-------ITRT 278 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~--~~~GilGLg~~~~Sl-------~sQ~ 278 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.|. ..+||||||++.++. +.|+
T Consensus 71 -~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l 143 (325)
T 2apr_A 71 -RTWSISYGDGSSASGILAKDNVNLGGLL----IK--GQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNL 143 (325)
T ss_dssp -EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHH
T ss_pred -CEEEEEECCCCCEEEEEEEEEEEECCEE----EC--cEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHH
Confidence 7899999999889999999999999865 88 999999998765332 489999999988763 3333
Q ss_pred ccc------ceEEecCCC-CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 279 NTS------YFSYCLPSP-YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 279 ~~~------~FS~cL~~~-~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
..+ .||+||.+. ....|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+||+ .+. ... .+
T Consensus 144 ~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~-~~~--~~~---~~ 214 (325)
T 2apr_A 144 ISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGT-STV--ASS---FD 214 (325)
T ss_dssp HHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETT-EEE--ECC---EE
T ss_pred HhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECC-Eec--CCC---ce
Confidence 322 299999763 235799999999976 8899999999752 568999999999999 332 222 35
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS 430 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~ 430 (477)
+||||||++++||+++|++|.+++.+.+. .. +. |.++|.. ..+|+|+|+| +|.+++||+++|+++..
T Consensus 215 ~iiDSGTs~~~lP~~~~~~~~~~~~~~~~---~~-g~-------~~~~C~~-~~~p~i~f~f-~g~~~~ip~~~~~~~~~ 281 (325)
T 2apr_A 215 GILDTGTTLLILPNNIAASVARAYGASDN---GD-GT-------YTISCDT-SAFKPLVFSI-NGASFQVSPDSLVFEEF 281 (325)
T ss_dssp EEECTTCSSEEEEHHHHHHHHHHHTCEEC---SS-SC-------EEECSCG-GGCCCEEEEE-TTEEEEECGGGGEEEEE
T ss_pred EEEecCCccEECCHHHHHHHHHHHhcccC---CC-Ce-------EEEECCC-CCCCcEEEEE-CCEEEEECHHHEEEcCC
Confidence 99999999999999999999999876532 11 22 4555653 3589999999 55699999999998754
Q ss_pred CCeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 431 VSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 431 ~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+..|++ |...+ .+.||||++|||++|++||++++|||||+++
T Consensus 282 -~~~C~~~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 282 -QGQCIAGFGYGN--WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp -TTEEEESEEEES--SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred -CCeEEEEEEcCC--CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 678995 55443 4679999999999999999999999999874
No 16
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=3.9e-56 Score=456.73 Aligned_cols=302 Identities=22% Similarity=0.388 Sum_probs=249.0
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC----CccCCCCCCccCCCCCccceecCCCccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRI 194 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 194 (477)
.+|+. ++.+.+|+++|+||||+|+|.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 52 ~~~l~--n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~~-------- 119 (383)
T 2x0b_A 52 SVILT--NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG-------- 119 (383)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred eEeee--ecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEECC--------
Confidence 34444 456799999999999999999999999999999999996 49754 899999999999863
Q ss_pred cccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC---CCCCCceeecCCCC
Q 011804 195 LRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD---KSGASGIMGLDRSP 271 (477)
Q Consensus 195 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~---~~~~~GilGLg~~~ 271 (477)
|.|.++|++|+ +.|++++|+|+|++.. ++ +.|||++...+. ...++||||||++.
T Consensus 120 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~----v~---~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~ 177 (383)
T 2x0b_A 120 --------------TELTLRYSTGT-VSGFLSQDIITVGGIT----VT---QMFGEVTEMPALPFMLAEFDGVVGMGFIE 177 (383)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEEETTEE----EE---EEEEEEEECCHHHHTTCSSSEEEECSCGG
T ss_pred --------------cEEEEEcCCcc-EEEEEEeeEEEEcCce----EE---EEEEEEEecCCcccccCCCceEeccCCCc
Confidence 78999999997 8999999999998753 43 999999998662 24789999999998
Q ss_pred ccc----------eeecc--ccceEEecCCCCCC----cceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEE
Q 011804 272 VSI----------ITRTN--TSYFSYCLPSPYGS----TGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISV 334 (477)
Q Consensus 272 ~Sl----------~sQ~~--~~~FS~cL~~~~~~----~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsv 334 (477)
++. .+|.. ...||+||.+.... .|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|
T Consensus 178 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~~i~v 253 (383)
T 2x0b_A 178 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSV 253 (383)
T ss_dssp GCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEECEEEE
T ss_pred cccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEeEEEe
Confidence 763 33422 12299999986443 799999999976 789999999987 6799999999999
Q ss_pred CCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcC
Q 011804 335 GGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLG 414 (477)
Q Consensus 335 gg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~g 414 (477)
+++.+... ...++||||||+++++|+++|++|.+++++. + ..+. |.++|.....+|+|+|+| +
T Consensus 254 ~~~~~~~~----~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~-~~g~-------~~v~C~~~~~~P~i~f~~-~ 316 (383)
T 2x0b_A 254 GSSTLLCE----DGCLALVDTGASYISGSTSSIEKLMEALGAK----K-RLFD-------YVVKCNEGPTLPDISFHL-G 316 (383)
T ss_dssp SSCCCBST----TCEEEEECTTCSSEEECHHHHHHHHHHHTCE----E-CSSC-------EEEEGGGTTTCCCEEEEE-T
T ss_pred CCceEEcC----CCcEEEEcCCCceEEcCHHHHHHHHHHhCCc----c-cCCc-------EEEeccccccCceEEEEE-C
Confidence 99865311 1136999999999999999999999998753 2 3333 445566556899999999 7
Q ss_pred CcEEEEcCCCeEEEeCC--CeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 415 GVDLELDVRGTLVVASV--SQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 415 g~~~~l~~~~~l~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
|+++.|++++|+++... +..|+ +|...+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 317 g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 317 GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp TEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 89999999999987642 45899 788653 135689999999999999999999999999874
No 17
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=6.8e-56 Score=444.94 Aligned_cols=296 Identities=22% Similarity=0.368 Sum_probs=249.0
Q ss_pred CCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCccccccccCCCCC
Q 011804 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (477)
Q Consensus 125 ~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 202 (477)
.++.+.+|+++|+||||+|++.|++||||+++||+|.+|.. |.. ++.|||++|+||+...
T Consensus 6 ~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------------- 67 (320)
T 4aa9_A 6 TSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKN--HHRFDPRKSSTFRNLG---------------- 67 (320)
T ss_dssp --CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT--SCCBCGGGCTTCEEEE----------------
T ss_pred eeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCC--CCCCCCCCCcCeEcCC----------------
Confidence 34567899999999999999999999999999999999985 754 4899999999999863
Q ss_pred CCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCccc-----
Q 011804 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSI----- 274 (477)
Q Consensus 203 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~Sl----- 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++.++.
T Consensus 68 ------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 134 (320)
T 4aa9_A 68 ------KPLSIHYGTGS-MEGFLGYDTVTVSNIV----DP--NQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVP 134 (320)
T ss_dssp ------EEEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCC
T ss_pred ------cEEEEEECCcE-EEEEEEEEEEEECCEe----ec--CeEEEEEEEcccccccccCcccEEecCcccccccCCCC
Confidence 78999999997 8999999999999875 88 999999998876 22 2579999999987653
Q ss_pred -eeecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcc
Q 011804 275 -ITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYF 346 (477)
Q Consensus 275 -~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f 346 (477)
+.|+..+ .||+||.+. ...|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+..+.
T Consensus 135 ~~~~l~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~~--- 206 (320)
T 4aa9_A 135 VFDNMMDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVACVG--- 206 (320)
T ss_dssp HHHHHHHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEESTT---
T ss_pred HHHHHHhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEeccCC---
Confidence 3333322 299999986 45799999999976 789999999986 6789999999999999886432
Q ss_pred cCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeE
Q 011804 347 TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL 426 (477)
Q Consensus 347 ~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l 426 (477)
...+||||||++++||++++++|.+++++. ....+. |.++|.....+|+|+|+| +|++++|++++|+
T Consensus 207 -~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~~~~g~-------~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~ 273 (320)
T 4aa9_A 207 -GCQAILDTGTSVLFGPSSDILKIQMAIGAT----ENRYGE-------FDVNCGNLRSMPTVVFEI-NGRDYPLSPSAYT 273 (320)
T ss_dssp -CEEEEECTTCSSEEEEHHHHHHHHHHTTCE----ECTTSC-------EEECGGGGGGCCCEEEEE-TTEEEEECHHHHE
T ss_pred -CcEEEEECCCCcEECCHHHHHHHHHHhCCc----ccCCCc-------EEEeCCCCCcCceEEEEE-CCEEEEECHHHhc
Confidence 136999999999999999999999998653 112222 667777777899999999 7899999999999
Q ss_pred EEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 427 VVASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 427 ~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
.+. +..|+ +|... ...+.||||++|||++|++||++++|||||+++
T Consensus 274 ~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 274 SKD--QGFCTSGFQGD-NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp EEE--TTEEEESEEEE-TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCC--CCeEEEEEEcC-CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 774 56899 67764 234679999999999999999999999999974
No 18
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=1.6e-55 Score=444.12 Aligned_cols=301 Identities=25% Similarity=0.414 Sum_probs=248.9
Q ss_pred eeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCC--ccCCCCCCccCCCCCccceecCCCcccccccc
Q 011804 120 FPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRE 197 (477)
Q Consensus 120 ~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~ 197 (477)
+|+. +.+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |.. ++.|||++|+||+...
T Consensus 5 ~~l~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~----------- 68 (329)
T 1htr_B 5 EPMA---YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTS--HSRFNPSESSTYSTNG----------- 68 (329)
T ss_dssp CGGG---GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT--SCCBCGGGCTTCEEEE-----------
T ss_pred eeeE---EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCC--CCcCCCccCCCeEECC-----------
Confidence 4554 356999999999999999999999999999999999985 864 4899999999999863
Q ss_pred CCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccc
Q 011804 198 SFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI 274 (477)
Q Consensus 198 ~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. | ...+||||||++.++.
T Consensus 69 -----------~~~~i~Yg~gs-~~G~~~~D~v~~g~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (329)
T 1htr_B 69 -----------QTFSLQYGSGS-LTGFFGYDTLTVQSIQ----VP--NQEFGLSENEPGTNFVYAQFDGIMGLAYPALSV 130 (329)
T ss_dssp -----------EEEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEESSCSSGGGGGCSCCEEEECCCCSCCC
T ss_pred -----------cEEEEEeCCCC-eEEEEEeeeEEEcceE----EC--ceEEEEEEEccccccccCCCceEEecCCCcccc
Confidence 78999999997 5999999999998765 78 9999999988662 3 3689999999998764
Q ss_pred e------eeccc------cceEEecCCCCCC-cceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEee
Q 011804 275 I------TRTNT------SYFSYCLPSPYGS-TGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340 (477)
Q Consensus 275 ~------sQ~~~------~~FS~cL~~~~~~-~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~ 340 (477)
. .|+.. ..||+||.+.... .|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 131 ~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 206 (329)
T 1htr_B 131 DEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQASG 206 (329)
T ss_dssp TTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTEECC
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCceee
Confidence 3 22222 2299999987544 799999999976 788999999987 5799999999999998764
Q ss_pred cCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEE
Q 011804 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLEL 420 (477)
Q Consensus 341 ~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l 420 (477)
.... ..++||||||++++||+++|++|.+++.+.. ...+. |.++|.....+|+|+|+| +|++++|
T Consensus 207 ~~~~---~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~----~~~g~-------~~~~C~~~~~~P~i~f~f-~g~~~~i 271 (329)
T 1htr_B 207 WCSE---GCQAIVDTGTSLLTVPQQYMSALLQATGAQE----DEYGQ-------FLVNCNSIQNLPSLTFII-NGVEFPL 271 (329)
T ss_dssp TTTT---CEEEEECTTCCSEEEEGGGHHHHHHHHTCEE----CTTSC-------EEECGGGGGGSCCEEEEE-TTEEEEE
T ss_pred ecCC---CceEEEecCCccEECCHHHHHHHHHHhCCee----cCCCe-------EEEeCCCcccCCcEEEEE-CCEEEEE
Confidence 1111 1369999999999999999999999986531 12222 445555556799999999 7899999
Q ss_pred cCCCeEEEeCCCeEEE-EEEecC---CCCC-eeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 421 DVRGTLVVASVSQVCL-GFATYP---PDPN-SITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 421 ~~~~~l~~~~~~~~Cl-~~~~~~---~~~~-~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++++|+++.. +.|+ +|.... ..++ .||||++|||++|++||++++|||||+++
T Consensus 272 ~~~~y~~~~~--g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 272 PPSSYILSNN--GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp CHHHHEEECS--SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhcccCC--CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 9999998875 3899 787653 1244 89999999999999999999999999874
No 19
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=3.1e-55 Score=449.39 Aligned_cols=298 Identities=20% Similarity=0.324 Sum_probs=248.5
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 53 ~~pl~--~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~--~~~y~~~~SsT~~~~~---------- 118 (375)
T 1miq_A 53 VIELD--DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSI--KNLYDSSKSKSYEKDG---------- 118 (375)
T ss_dssp CCCGG--GTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGG--SCCBCGGGCTTCEEEE----------
T ss_pred eEEcc--cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccC--CCcCCCccCCceEECC----------
Confidence 45554 345689999999999999999999999999999999997 4854 4899999999999863
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEec----CCCCC--CCCCceeecCCC
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINN----SSGDK--SGASGIMGLDRS 270 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~----~~g~~--~~~~GilGLg~~ 270 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ + .|||++. .. .| ...+||||||++
T Consensus 119 ------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~----v~--~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~ 177 (375)
T 1miq_A 119 ------------TKVDITYGSGT-VKGFFSKDLVTLGHLS----MP--Y-KFIEVTDTDDLEP-IYSSVEFDGILGLGWK 177 (375)
T ss_dssp ------------EEEEEEETTEE-EEEEEEEEEEEETTEE----EE--E-EEEEEEECGGGTT-HHHHSCCCEEEECSSC
T ss_pred ------------cEEEEEeCCCe-EEEEEEEEEEEEcCce----EC--c-EEEEEEecccccc-ccccCCCceEEeCCCC
Confidence 78999999997 8999999999999765 88 8 9999998 44 33 368999999999
Q ss_pred Ccccee------eccc------cceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCE
Q 011804 271 PVSIIT------RTNT------SYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGK 337 (477)
Q Consensus 271 ~~Sl~s------Q~~~------~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~ 337 (477)
.++... |+.. ..||+||++.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|+ |+|+++
T Consensus 178 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~v~g~ 252 (375)
T 1miq_A 178 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQ 252 (375)
T ss_dssp CTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EEETTE
T ss_pred cccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EEECCE
Confidence 876532 2222 2299999987546899999999976 789999999986 679999999 999998
Q ss_pred EeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcE
Q 011804 338 KLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVD 417 (477)
Q Consensus 338 ~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~ 417 (477)
.+ ...++||||||++++||+++|++|.+++.+. ++...+. |.++|.. ..+|+|+|+| +|++
T Consensus 253 ~~-------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g~-------~~~~C~~-~~~P~i~f~f-~g~~ 313 (375)
T 1miq_A 253 TM-------EKANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLPF-------YVTTCDN-KEMPTLEFKS-ANNT 313 (375)
T ss_dssp EE-------EEEEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSSC-------EEEETTC-TTCCCEEEEC-SSCE
T ss_pred Ec-------ccceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCCe-------EEEECCC-CCCCcEEEEE-CCEE
Confidence 86 1246999999999999999999999998753 3333333 4445555 6799999999 7899
Q ss_pred EEEcCCCeEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 418 LELDVRGTLVVAS--VSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 418 ~~l~~~~~l~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++|++++|+++.. +...|+ +|.+.....+.||||++|||++|+|||++++|||||+++
T Consensus 314 ~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 314 YTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp EEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 9999999999874 346898 888764323689999999999999999999999999864
No 20
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=9.3e-55 Score=447.32 Aligned_cols=311 Identities=24% Similarity=0.370 Sum_probs=249.5
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+..|+++|.||||+|++.|+|||||+++||+|.+|..|. +.|||++|+||+...
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~----~~f~~~~SsT~~~~~---------------------- 65 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID----TYFDTERSSTYRSKG---------------------- 65 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBS----CCCCGGGCTTCEEEE----------------------
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCccc----cCcccccCccceeCC----------------------
Confidence 478999999999999999999999999999999997763 789999999999863
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCcc------------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVS------------ 273 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~S------------ 273 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. .+. ..+.|+|.....+.| ...+||||||++.++
T Consensus 66 ~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~ 140 (383)
T 2ewy_A 66 FDVTVKYTQGS-WTGFVGEDLVTIPKGF---NTS-FLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDS 140 (383)
T ss_dssp EEEEEECSSCE-EEEEEEEEEEEETTTE---EEE-EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred ceEEEEECCcE-EEEEEEEEEEEECCCc---cce-eEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHH
Confidence 78999999997 6999999999998643 121 146789887766655 267999999998774
Q ss_pred ceeecccc-ceEEecCCC-------CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCC
Q 011804 274 IITRTNTS-YFSYCLPSP-------YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTS 344 (477)
Q Consensus 274 l~sQ~~~~-~FS~cL~~~-------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~ 344 (477)
+++|.... .||+||... ....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.++..
T Consensus 141 l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~~~~~ 216 (383)
T 2ewy_A 141 LVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLNLDCR 216 (383)
T ss_dssp HHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECCCCTT
T ss_pred HHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcccccc
Confidence 34454432 299998631 235799999999976 889999999987 57899999999999999987766
Q ss_pred cccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCC-CccccceeeccCCcccccCeEEEEEcCC-----cEE
Q 011804 345 YFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-EDLLDTCYDLSAYETVVVPKIAIHFLGG-----VDL 418 (477)
Q Consensus 345 ~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~~~~~~~P~i~~~f~gg-----~~~ 418 (477)
.|...++||||||++++||+++|++|++++.+.+.......+. ......|+..+......+|+|+|+|.|+ .++
T Consensus 217 ~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~ 296 (383)
T 2ewy_A 217 EYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRI 296 (383)
T ss_dssp TTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEE
T ss_pred ccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEE
Confidence 6655689999999999999999999999999864311000110 0124578876554445799999999654 379
Q ss_pred EEcCCCeEEEeC---CCeEEEEE--EecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 419 ELDVRGTLVVAS---VSQVCLGF--ATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 419 ~l~~~~~l~~~~---~~~~Cl~~--~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+|++++|+++.. .+..|++| .+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 297 ~l~~~~yi~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 297 TILPQLYIQPMMGAGLNYECYRFGISPS---TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp EECHHHHEEEECCCTTCSEEEEESEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred EEChHHheeecccCCCCceeEEEEecCC---CCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 999999998863 35689864 332 346999999999999999999999999999994
No 21
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1.3e-54 Score=439.59 Aligned_cols=300 Identities=21% Similarity=0.345 Sum_probs=244.7
Q ss_pred eeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCC--CC---------CccCCCCCCccCCCCCccceec
Q 011804 118 FTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKP--CI---------HCFQQRDPFFYASKSKTFFKIP 186 (477)
Q Consensus 118 ~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~--C~---------~C~~~~~~~fdps~SsT~~~~~ 186 (477)
+.+|+.. .+++|+++|.||||+|++.|++||||+++||+|.. |. .|. .++.|||++|+||+...
T Consensus 3 v~~~l~~---~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~~~ 77 (342)
T 3pvk_A 3 VPVTLHN---EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCK--QKGTYDPSGSSASQDLN 77 (342)
T ss_dssp EEEEEEE---CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGG--TTCCBCGGGCTTCEEEE
T ss_pred cceEEec---CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCC--CCCcCCCccCcceeecC
Confidence 3445543 24899999999999999999999999999997543 42 374 35899999999999873
Q ss_pred CCCccccccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceee
Q 011804 187 CNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMG 266 (477)
Q Consensus 187 C~s~~C~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilG 266 (477)
|.|.+.|+||+.+.|.+++|+|+|++.. ++ ++.|||++... ..+||||
T Consensus 78 ----------------------~~~~i~Yg~gs~~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~----~~~GilG 125 (342)
T 3pvk_A 78 ----------------------TPFKIGYGDGSSSQGTLYKDTVGFGGVS----IK--NQVLADVDSTS----IDQGILG 125 (342)
T ss_dssp ----------------------EEEEEECSSSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEES----SSSCEEE
T ss_pred ----------------------CeEEEEecCCCeEEEEEEEEEEEECCEE----ec--ceEEEEEEccC----CCccEEE
Confidence 7899999999889999999999999875 88 99999999875 6899999
Q ss_pred cCCCCc-------cceeeccccc------eEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEE
Q 011804 267 LDRSPV-------SIITRTNTSY------FSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGI 332 (477)
Q Consensus 267 Lg~~~~-------Sl~sQ~~~~~------FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI 332 (477)
||++.+ +++.|+..+. ||+||.+.....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|
T Consensus 126 Lg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i 201 (342)
T 3pvk_A 126 VGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTS----DRELRISLGSV 201 (342)
T ss_dssp CSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEE
T ss_pred ecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCc----cceEEEEEeEE
Confidence 999874 4555554432 99999886656899999999976 889999999988 45899999999
Q ss_pred EECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEE
Q 011804 333 SVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHF 412 (477)
Q Consensus 333 svgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f 412 (477)
+|+++.+..+. ..+||||||++++||+++|++|.+++.+.... ...+ ..+|.++|.. .|+|+|+|
T Consensus 202 ~v~g~~~~~~~-----~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~--~~~~-----~~~~~~~C~~---~p~i~f~f 266 (342)
T 3pvk_A 202 EVSGKTINTDN-----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ--DSNG-----NSFYEVDCNL---SGDVVFNF 266 (342)
T ss_dssp EETTEEEEEEE-----EEEEECTTCSSEEECHHHHHHHHHHTTCEEEE--CTTS-----CEEEEECSCC---CSEEEEEE
T ss_pred EECCEEecCCC-----ceEEEeCCCCCeecCHHHHHHHHHHcCCeecc--cCCC-----ceEEEEecCC---CCceEEEE
Confidence 99999887532 35999999999999999999999999765211 1111 1235666663 49999999
Q ss_pred cCCcEEEEcCCCeEEEeC--CC---eEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 413 LGGVDLELDVRGTLVVAS--VS---QVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 413 ~gg~~~~l~~~~~l~~~~--~~---~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
.+|++++||+++|+++.. .+ ..|+ +|... +.||||++|||++|++||++++|||||+++|+
T Consensus 267 ~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 267 SKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVN----DANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp STTCEEEEEGGGGEEC----------CEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CCCCEEEEcHHHheeeccccCCCcCCeeEEEEeeC----CCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 668999999999998731 22 6898 55542 46999999999999999999999999999995
No 22
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=4.2e-54 Score=444.26 Aligned_cols=310 Identities=23% Similarity=0.370 Sum_probs=248.7
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+..|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+...
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~----~~~y~~~~SsT~~~~~---------------------- 73 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL----HRYYQRQLSSTYRDLR---------------------- 73 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC----SCCCCGGGCTTCEEEE----------------------
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc----cCCcCcccCCCceeCC----------------------
Confidence 47899999999999999999999999999999998655 3789999999999863
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcc-cCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccc----------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQE-ANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSI---------- 274 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~-~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl---------- 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++ .. ++ ..+.|++.....+.| ...+||||||++.++.
T Consensus 74 ~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~----~~-~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 147 (395)
T 2qp8_A 74 KGVYVPYTQGK-WEGELGTDLVSIPHGPN----VT-VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 147 (395)
T ss_dssp EEEEEECSSCE-EEEEEEEEEEECTTSCS----CE-EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred ceEEEEECCcE-EEEEEEeEEEEECCCCC----ce-EEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHH
Confidence 78999999997 59999999999984 33 32 136788887665555 3689999999987643
Q ss_pred --eeecccc-ceEEecCCC----------CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEee
Q 011804 275 --ITRTNTS-YFSYCLPSP----------YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLP 340 (477)
Q Consensus 275 --~sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~ 340 (477)
.+|.... .||+||.+. ....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 148 ~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~ 223 (395)
T 2qp8_A 148 SLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLK 223 (395)
T ss_dssp HHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECC
T ss_pred HHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECCEEcc
Confidence 3443322 399999753 125799999999976 788999999987 5789999999999999988
Q ss_pred cCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCC-CccccceeeccCCcccccCeEEEEEcCCc---
Q 011804 341 FNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-EDLLDTCYDLSAYETVVVPKIAIHFLGGV--- 416 (477)
Q Consensus 341 ~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~--- 416 (477)
++...|...++||||||++++||+++|++|+++|.+.+.......+. ......|+..+......+|+|+|+|.|+.
T Consensus 224 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~ 303 (395)
T 2qp8_A 224 MDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ 303 (395)
T ss_dssp CCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTE
T ss_pred cCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEccCCCCc
Confidence 77665654689999999999999999999999999874321100110 01245798766555567999999996553
Q ss_pred --EEEEcCCCeEEEeCC----CeEEEE--EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 417 --DLELDVRGTLVVASV----SQVCLG--FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 417 --~~~l~~~~~l~~~~~----~~~Cl~--~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+++|++++|+++... ...|++ +.+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 304 ~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 304 SFRITILPQQYLRPVEDVATSQDDCYKFAISQS---STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp EEEEEECHHHHEEEECCTTCCSCEEEEECEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred eEEEEECHHHhEeecccCCCCCceEEEEEecCC---CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 799999999988642 358974 4432 356999999999999999999999999999995
No 23
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=5.7e-54 Score=452.26 Aligned_cols=314 Identities=23% Similarity=0.412 Sum_probs=248.8
Q ss_pred ccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC---CccCCCCCCccCCCCCccceecCCCccccccccCC
Q 011804 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESF 199 (477)
Q Consensus 123 ~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~ 199 (477)
.+.++.+.+|+++|+||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+..
T Consensus 45 ~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~-------------- 108 (478)
T 1qdm_A 45 ALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKN-------------- 108 (478)
T ss_dssp GGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCC--------------
T ss_pred EeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeC--------------
Confidence 334445689999999999999999999999999999999996 49765 79999999999874
Q ss_pred CCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCCCCccc--
Q 011804 200 PFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI-- 274 (477)
Q Consensus 200 ~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~~~~Sl-- 274 (477)
+ |.|.+.|++|+ +.|++++|+|+|++.. ++ ++.|||++...+. | ..++||||||++.+++
T Consensus 109 ---~-----~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~----v~--~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~ 173 (478)
T 1qdm_A 109 ---G-----KPAAIQYGTGS-IAGYFSEDSVTVGDLV----VK--DQEFIEATKEPGITFLVAKFDGILGLGFKEISVGK 173 (478)
T ss_dssp ---C-----CEEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGG
T ss_pred ---C-----cEEEEEcCCCC-eEEEEEEEEEEECCeE----EC--CEEEEEEEecCCcccccccccceecccccccccCC
Confidence 2 78999999997 8999999999999865 88 9999999987652 2 3689999999998874
Q ss_pred --------eeecc--ccceEEecCCCC--CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeec
Q 011804 275 --------ITRTN--TSYFSYCLPSPY--GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPF 341 (477)
Q Consensus 275 --------~sQ~~--~~~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~ 341 (477)
.+|.. ...||+||++.. ...|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+||++.+.+
T Consensus 174 ~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~ 249 (478)
T 1qdm_A 174 AVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVLVGGKSTGF 249 (478)
T ss_dssp CCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEEETTEECST
T ss_pred CCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEEECCEEEee
Confidence 23321 122999998753 34799999999976 788999999987 57999999999999998765
Q ss_pred CCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHh----------hhc------------ccc-----------cCC-
Q 011804 342 NTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRM----------KKY------------KKA-----------KGL- 387 (477)
Q Consensus 342 ~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~----------~~~------------~~~-----------~~~- 387 (477)
.... .++||||||++++||+++|++|.++|.+.. ..| +.. .+.
T Consensus 250 ~~~~---~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~ 326 (478)
T 1qdm_A 250 CAGG---CAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTR 326 (478)
T ss_dssp TTTC---EEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC------
T ss_pred cCCC---ceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCccc
Confidence 4322 369999999999999999999999986420 000 000 000
Q ss_pred --------------------------------------------------Ccccccee---------eccCCcccccCeE
Q 011804 388 --------------------------------------------------EDLLDTCY---------DLSAYETVVVPKI 408 (477)
Q Consensus 388 --------------------------------------------------~~~~~~Cy---------~~~~~~~~~~P~i 408 (477)
....+.|+ .++|.....+|+|
T Consensus 327 ~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~lP~i 406 (478)
T 1qdm_A 327 GVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDI 406 (478)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTCCCE
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecccccccccE
Confidence 00012344 3455555679999
Q ss_pred EEEEcCCcEEEEcCCCeEEEeCC--CeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 409 AIHFLGGVDLELDVRGTLVVASV--SQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 409 ~~~f~gg~~~~l~~~~~l~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+|+| ||++++|+|++|++.... ...|+ +|...+ ..++.||||++|||++|+|||++++|||||++.
T Consensus 407 ~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 407 EFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp EEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 9999 789999999999998743 35899 577542 235689999999999999999999999999864
No 24
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=3.4e-54 Score=436.27 Aligned_cols=304 Identities=21% Similarity=0.383 Sum_probs=250.6
Q ss_pred ceeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC----CccCCCCCCccCCCCCccceecCCCccc
Q 011804 117 AFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSC 192 (477)
Q Consensus 117 ~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C 192 (477)
.+.+|+. ++.+.+|+++|.||||+|++.|++||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 7 ~~~~~l~--n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~--~~~y~~~~SsT~~~~~------ 76 (341)
T 3k1w_A 7 TSSVILT--NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY--HKLFDASDSSSYKHNG------ 76 (341)
T ss_dssp CEEEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHT--SCCBCGGGCTTCEEEE------
T ss_pred Cccccce--EccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccC--CCCCCCCcCcCeeECC------
Confidence 3455554 445799999999999999999999999999999999998 4854 4899999999999852
Q ss_pred cccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCC-C--CCCCceeecCC
Q 011804 193 RILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDR 269 (477)
Q Consensus 193 ~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~-~--~~~~GilGLg~ 269 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. + ++.|||++...+. | ...+||||||+
T Consensus 77 ----------------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~----v---~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 77 ----------------TELTLRYSTGT-VSGFLSQDIITVGGIT----V---TQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp ----------------EEEEEEETTEE-EEEEEEEEEEEETTEE----E---EEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred ----------------CEEEEEECCcE-EEEEEEEEEEEECCce----e---eEEEEEEEEccccccccCCcceEEECCc
Confidence 78999999997 8999999999998754 3 7999999988753 2 36899999999
Q ss_pred CCcc------ceeeccc------cceEEecCCCC----CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEE
Q 011804 270 SPVS------IITRTNT------SYFSYCLPSPY----GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGI 332 (477)
Q Consensus 270 ~~~S------l~sQ~~~------~~FS~cL~~~~----~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gI 332 (477)
+.++ ++.++.. ..||+||.+.. ...|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|
T Consensus 133 ~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i 208 (341)
T 3k1w_A 133 IEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGV 208 (341)
T ss_dssp GGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEECCE
T ss_pred hhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEeEE
Confidence 8876 2233322 22999999864 24799999999976 789999999986 67899999999
Q ss_pred EECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEE
Q 011804 333 SVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHF 412 (477)
Q Consensus 333 svgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f 412 (477)
+|+++.+..+.. ..+||||||++++||++++++|.+++.+. + .. . . |.++|.....+|+|+|+|
T Consensus 209 ~v~~~~~~~~~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~---~-~~----~--g--~~~~C~~~~~~p~i~f~f 272 (341)
T 3k1w_A 209 SVGSSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAK---K-RL----F--D--YVVKCNEGPTLPDISFHL 272 (341)
T ss_dssp EETTEEEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCE---E-CS----S--C--EEEEGGGGGGCCCEEEEE
T ss_pred EECCEEeecCCC----CEEEEECCCChhcCCHHHHHHHHHHcCCe---e-cC----C--C--eEEeCCCCCcCCcEEEEE
Confidence 999997643321 36999999999999999999999998653 1 11 1 1 667777767899999999
Q ss_pred cCCcEEEEcCCCeEEEeC--CCeEEE-EEEecC---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 413 LGGVDLELDVRGTLVVAS--VSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 413 ~gg~~~~l~~~~~l~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+|++++|++++|+++.. .+..|+ +|...+ ...+.||||++|||++|++||++++|||||+++
T Consensus 273 -~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 273 -GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp -TTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred -CCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 78999999999998753 367899 677642 235679999999999999999999999999874
No 25
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=2e-54 Score=436.28 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=245.4
Q ss_pred CCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccccCCCCCC
Q 011804 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGN 203 (477)
Q Consensus 126 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 203 (477)
++.+.+|+++|.|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++| ||+...
T Consensus 13 n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~----------------- 72 (330)
T 1yg9_A 13 VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG----------------- 72 (330)
T ss_dssp EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE-----------------
T ss_pred cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC-----------------
Confidence 34458999999999 99999999999999999999997 495555689999999 998752
Q ss_pred CCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC--CCCCceeecCCCCcc-------c
Q 011804 204 CNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK--SGASGIMGLDRSPVS-------I 274 (477)
Q Consensus 204 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~--~~~~GilGLg~~~~S-------l 274 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++.....| ...+||||||++.++ +
T Consensus 73 -----~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~----~~--~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~ 140 (330)
T 1yg9_A 73 -----NVQVKFFDTGS-AVGRGIEDSLTISQLT----TS--QQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTV 140 (330)
T ss_dssp -----EEEEEETTTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCH
T ss_pred -----CEEEEEECCce-EEEEEEEEEEEECCEE----Ec--CeEEEEEEEcccccccccCceEEEcCcchhccccCCCCH
Confidence 68999999997 5999999999999865 78 99999999883323 268999999999887 2
Q ss_pred eeecc-----ccceEEecCCCCCC--cceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcc
Q 011804 275 ITRTN-----TSYFSYCLPSPYGS--TGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYF 346 (477)
Q Consensus 275 ~sQ~~-----~~~FS~cL~~~~~~--~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f 346 (477)
+.|+. ...||+||.+..+. .|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+. ..
T Consensus 141 ~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~--~~-- 212 (330)
T 1yg9_A 141 LENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIGDTTVA--PA-- 212 (330)
T ss_dssp HHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEETTEEEE--CT--
T ss_pred HHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEECCEEEc--CC--
Confidence 33332 22299999876333 799999999976 789999999986 6799999999999998865 11
Q ss_pred cCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCcccccee-eccCCcccccCeEEEEEcCCcEEEEcCCCe
Q 011804 347 TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCY-DLSAYETVVVPKIAIHFLGGVDLELDVRGT 425 (477)
Q Consensus 347 ~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy-~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 425 (477)
...+||||||++++||+++|++|.+++++. + ...+. ..| .++|.....+|+|+|+| ||++++|++++|
T Consensus 213 -~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~-~~~g~-----~~~~~~~C~~~~~~p~i~f~f-gg~~~~l~~~~y 281 (330)
T 1yg9_A 213 -GTQAIIDTSKAIIVGPKAYVNPINEAIGCV---V-EKTTT-----RRICKLDCSKIPSLPDVTFVI-NGRNFNISSQYY 281 (330)
T ss_dssp -TCEEEECTTCSSEEEEHHHHHHHHHHHTCE---E-EECSS-----CEEEEECGGGGGGSCCEEEEE-TTEEEEECHHHH
T ss_pred -CcEEEEecCCccccCCHHHHHHHHHHhCCc---c-cCCCc-----eEEEEEECCCccccCcEEEEE-CCEEEEECHHHh
Confidence 246999999999999999999999998653 2 11220 125 66777666799999999 899999999999
Q ss_pred EEEeCCCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 426 LVVASVSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 426 l~~~~~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+++. +..|+ +|.+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 282 IQQN--GNLCYSGFQPC-GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EEEE--TTEEEESEEEE-TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccC--CCcEEEEEEeC-CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9887 56898 77765 234679999999999999999999999999864
No 26
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=4.6e-54 Score=448.94 Aligned_cols=299 Identities=20% Similarity=0.320 Sum_probs=246.6
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+|+. ++.+.+|+++|+||||+|++.|++||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 129 ~~~L~--n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~--~~~ydps~SsT~~~~~---------- 194 (453)
T 2bju_A 129 NIELV--DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT--KHLYDSSKSRTYEKDG---------- 194 (453)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGG--SCCBCGGGCTTCEEEE----------
T ss_pred ceeeE--ecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCC--CCcCCCccCCceeECC----------
Confidence 45554 345689999999999999999999999999999999997 4754 5899999999999863
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCC--CC-C--CCCCceeecCCCC
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSS--GD-K--SGASGIMGLDRSP 271 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~--g~-~--~~~~GilGLg~~~ 271 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ +.|||++... +. | ...+||||||++.
T Consensus 195 ------------~~~~i~YgdGs-~~G~~~~Dtv~ig~~~----v~---~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~ 254 (453)
T 2bju_A 195 ------------TKVEMNYVSGT-VSGFFSKDLVTVGNLS----LP---YKFIEVIDTNGFEPTYTASTFDGILGLGWKD 254 (453)
T ss_dssp ------------EEEEEECSSSE-EEEEEEEEEEEETTEE----EE---EEEEEEEECGGGTTHHHHSSCCEEEECSCGG
T ss_pred ------------cEEEEEcCCCC-eEEEEEEEEEEEeCcE----EE---EEEEEEEEecccCccccccCCceeEeccCCc
Confidence 78999999998 8999999999998753 43 9999999886 52 2 3689999999988
Q ss_pred cccee------eccc------cceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEE
Q 011804 272 VSIIT------RTNT------SYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKK 338 (477)
Q Consensus 272 ~Sl~s------Q~~~------~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~ 338 (477)
++... |+.. ..||+||++.+...|.|+|||+|+. +.+++.|+|+.. +.+|.|.|+ |+|++ .
T Consensus 255 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~Vgg-~ 328 (453)
T 2bju_A 255 LSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHVGN-I 328 (453)
T ss_dssp GSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEETT-E
T ss_pred ccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEECc-E
Confidence 76532 2222 2299999987556899999999976 789999999987 679999999 99999 3
Q ss_pred eecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEE
Q 011804 339 LPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDL 418 (477)
Q Consensus 339 l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~ 418 (477)
+ + ...++||||||++++||+++|++|.+++.+. +...+. .|.++|.. ..+|+|+|+| ||+++
T Consensus 329 ~-~-----~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g~------~~~v~C~~-~~~P~itf~f-gg~~~ 390 (453)
T 2bju_A 329 M-L-----EKANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFLP------FYVTLCNN-SKLPTFEFTS-ENGKY 390 (453)
T ss_dssp E-E-----EEEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTSS------CEEEETTC-TTCCCEEEEC-SSCEE
T ss_pred E-e-----ccccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCCc------eEEEecCC-CCCCcEEEEE-CCEEE
Confidence 3 2 2246999999999999999999999887642 222221 25556665 6799999999 78999
Q ss_pred EEcCCCeEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 419 ELDVRGTLVVAS--VSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 419 ~l~~~~~l~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+|++++|+++.. +...|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 391 ~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 391 TLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp EECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999999874 346898 788764334689999999999999999999999999864
No 27
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.7e-53 Score=440.64 Aligned_cols=313 Identities=23% Similarity=0.367 Sum_probs=248.1
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+.+|+++|+||||+|++.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~--~~~~y~~~~SsT~~~~~---------------------- 80 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRDLR---------------------- 80 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEEEE----------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc--ccCCcCcccCcccccCC----------------------
Confidence 37899999999999999999999999999999998 43 34899999999999863
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccce----------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSII---------- 275 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~---------- 275 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. .+. ..+.|+|.....+.| ...+||||||++.++..
T Consensus 81 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~---~~~-~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 155 (402)
T 3vf3_A 81 KGVYVPYTQGK-WEGELGTDLVSIPHGP---NVT-VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 155 (402)
T ss_dssp EEEEEECSSCE-EEEEEEEEEEECTTSC---SCE-EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred CEEEEEECcEE-EEEEEEEEEEEECCcc---ccc-eeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHH
Confidence 78999999997 6999999999998532 132 135588887776654 36899999999877543
Q ss_pred --eecccc-ceEEecCCC----------CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeec
Q 011804 276 --TRTNTS-YFSYCLPSP----------YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPF 341 (477)
Q Consensus 276 --sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~ 341 (477)
+|.... .||+||.+. ....|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.+
T Consensus 156 L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~ 231 (402)
T 3vf3_A 156 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 231 (402)
T ss_dssp HHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETTEECCC
T ss_pred HHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECCEEecc
Confidence 232222 399999742 234799999999986 789999999987 67899999999999999987
Q ss_pred CCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCC-CccccceeeccCCcccccCeEEEEEcCCc----
Q 011804 342 NTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-EDLLDTCYDLSAYETVVVPKIAIHFLGGV---- 416 (477)
Q Consensus 342 ~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~---- 416 (477)
+...+....+||||||++++||+++|++|.+++.+.....+..... ...+..|+.........+|+|+|+|.|+.
T Consensus 232 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~ 311 (402)
T 3vf3_A 232 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQS 311 (402)
T ss_dssp CGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEE
T ss_pred cccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCce
Confidence 6665544579999999999999999999999999974311111111 02356898776555557999999996543
Q ss_pred -EEEEcCCCeEEEeCCC----eEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 417 -DLELDVRGTLVVASVS----QVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 417 -~~~l~~~~~l~~~~~~----~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+++|++++|+++.... ..|++|.... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 312 ~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 312 FRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp EEEEECHHHHEEECCCGGGTTEEEEEECEEE-ESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred EEEEECHHHheehhccCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 5999999999986432 4899643221 2356999999999999999999999999999995
No 28
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=1.6e-53 Score=428.53 Aligned_cols=292 Identities=20% Similarity=0.341 Sum_probs=241.1
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++.. +
T Consensus 14 ~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-----------------~----- 68 (323)
T 1izd_A 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID-----------------G----- 68 (323)
T ss_dssp GCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE-----------------E-----
T ss_pred CCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC-----------------C-----
Confidence 48999999999 899999999999999999999998665667899999999 6532 2
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccce----------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSII---------- 275 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~---------- 275 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.| ...+||||||++.++.+
T Consensus 69 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~ 142 (323)
T 1izd_A 69 ATWSISYGDGSSASGDVYKDKVTVGGVS----YD--SQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFD 142 (323)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CeEEEEcCCCCeEEEEEEEEEEEECCEE----EC--ceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHH
Confidence 7999999999889999999999999765 88 99999999876533 36899999999877653
Q ss_pred ---eeccccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCE
Q 011804 276 ---TRTNTSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGA 351 (477)
Q Consensus 276 ---sQ~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~ 351 (477)
+|+....||+||.+. ..|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+|++ .+. ... .++
T Consensus 143 ~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~~--~~~---~~a 211 (323)
T 1izd_A 143 NVKSSLSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDNS---QGFWGFTADGYSIGS-DSS--SDS---ITG 211 (323)
T ss_dssp HHGGGSSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBCT---TSSCEEEESEEEETT-EEE--CCC---EEE
T ss_pred HHHHhccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCCC---CceEEEEECeEEECC-ccc--CCC---ceE
Confidence 233333399999874 4799999999976 7899999999852 568999999999999 543 222 369
Q ss_pred EEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCC
Q 011804 352 IIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASV 431 (477)
Q Consensus 352 iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~ 431 (477)
||||||++++||+++|++|.+++.++. +....+. |.++|. ..+|+|+|+| ||++++||+++|++....
T Consensus 212 iiDSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g~-------~~~~C~--~~~P~i~f~f-gg~~~~i~~~~~~~~~~~ 279 (323)
T 1izd_A 212 IADTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQGG-------YVFPSS--ASLPDFSVTI-GDYTATVPGEYISFADVG 279 (323)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-------EEEETT--CCCCCEEEEE-TTEEEEECHHHHEEEECS
T ss_pred EEeCCCcceeCCHHHHHHHHHhCCCcE--EcCcCCE-------EEEECC--CCCceEEEEE-CCEEEecCHHHeEEecCC
Confidence 999999999999999999999874321 2222222 455565 3689999999 899999999999988755
Q ss_pred CeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 432 SQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 432 ~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+..|++ |...+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 280 ~~~C~~~i~~~~-~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 280 NGQTFGGIQSNS-GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp TTEEEESEEECT-TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEEEcCC-CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 678995 77653 34679999999999999999999999999864
No 29
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=2.4e-53 Score=427.51 Aligned_cols=294 Identities=22% Similarity=0.316 Sum_probs=240.9
Q ss_pred CCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCC
Q 011804 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (477)
Q Consensus 128 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~ 207 (477)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++.. +
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-----------------~---- 67 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS-----------------G---- 67 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT-----------------T----
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC-----------------C----
Confidence 348999999999 999999999999999999999998765677899999999 5431 2
Q ss_pred CCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccce---------
Q 011804 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSII--------- 275 (477)
Q Consensus 208 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~--------- 275 (477)
|.|.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.| ...+||||||++.++..
T Consensus 68 -~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~ 140 (325)
T 1ibq_A 68 -YSWDISYGDGSSASGDVYRDTVTVGGVT----TN--KQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFF 140 (325)
T ss_dssp -CBEEEECSSSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHH
T ss_pred -CEEEEEeCCCCEEEEEEEEeEEEECCEE----Ec--ceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHH
Confidence 8999999999889999999999999765 88 99999999876533 36899999999877642
Q ss_pred eecc----ccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCC
Q 011804 276 TRTN----TSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFG 350 (477)
Q Consensus 276 sQ~~----~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~ 350 (477)
+|+. ...||+||.+. ..|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+|+++.+. .. ..+
T Consensus 141 ~~l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~~~~~--~~---~~~ 210 (325)
T 1ibq_A 141 DTVKSQLDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADSS---QGYWGFSTDGYSIGDGSSS--SS---GFS 210 (325)
T ss_dssp HHHGGGSSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEECEEEETTSCCB--SC---CEE
T ss_pred HHHHHhcCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCCC---CceEEEEECcEEECCeecc--CC---Cce
Confidence 3433 23399999874 4799999999976 8899999999852 5689999999999998653 11 136
Q ss_pred EEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC
Q 011804 351 AIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS 430 (477)
Q Consensus 351 ~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~ 430 (477)
+||||||++++||+++|++|.+++.++. +....+. |.++|. ..+|+|+|+| ||++++||+++|++...
T Consensus 211 aiiDSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g~-------~~~~C~--~~~P~i~f~f-gg~~~~i~~~~~~~~~~ 278 (325)
T 1ibq_A 211 AIADTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAGG-------YVFSCS--TDLPDFTVVI-GDYKAVVPGKYINYAPV 278 (325)
T ss_dssp EEECTTCCSEEECHHHHHHHHTTSTTCB--CCSSSSS-------CEEETT--CCCCCEEEEE-TTEEEEECHHHHEEEES
T ss_pred EEEeCCCCcEeCCHHHHHHHHHhCCCce--EcCcCCe-------EEEEcC--CCCCcEEEEE-CCEEEEECHHHhccccc
Confidence 9999999999999999999999874321 2222222 444555 3689999999 89999999999998763
Q ss_pred --CCeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 431 --VSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 431 --~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
+...|++ |.... ..+.||||++|||++|+|||++++|||||+++
T Consensus 279 ~~~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 279 STGSSTCYGGIQSNS-GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp STTCSEEEESEEECT-TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCCCCeEEEEEEcCC-CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 3478995 66552 34679999999999999999999999999874
No 30
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=3.8e-53 Score=444.82 Aligned_cols=313 Identities=23% Similarity=0.367 Sum_probs=251.1
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+..|+++|+||||+|++.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 73 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~--~~~~y~~~~SsT~~~~~---------------------- 126 (455)
T 3lpj_A 73 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRDLR---------------------- 126 (455)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEEEE----------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--cc--cCCcccCCCCCCcccCC----------------------
Confidence 36899999999999999999999999999999988 53 45899999999999863
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccce----------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSII---------- 275 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~---------- 275 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. .+. ..+.|+|+....+.| ...+||||||++.++..
T Consensus 127 ~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~---~~~-~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 201 (455)
T 3lpj_A 127 KGVYVPYTQGK-WEGELGTDLVSIPHGP---NVT-VRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 201 (455)
T ss_dssp EEEEEECSSCE-EEEEEEEEEEECTTSC---SCE-EEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred ccEEEEeCCeE-EEEEEEEEEEEECCCc---cee-eEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHH
Confidence 78999999997 6999999999998532 122 136789988876654 36899999999877643
Q ss_pred --eecccc-ceEEecCCC----------CCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeec
Q 011804 276 --TRTNTS-YFSYCLPSP----------YGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPF 341 (477)
Q Consensus 276 --sQ~~~~-~FS~cL~~~----------~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~ 341 (477)
+|.... .||+||.+. ....|.|+|||+|+. +.+++.|+|+.. ..+|.|.+++|+|+++.+.+
T Consensus 202 L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~ 277 (455)
T 3lpj_A 202 LVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 277 (455)
T ss_dssp HHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECCC
T ss_pred HHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECCEEccc
Confidence 232222 399999753 235799999999976 789999999987 67899999999999999987
Q ss_pred CCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCC-CccccceeeccCCcccccCeEEEEEcCCc----
Q 011804 342 NTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGL-EDLLDTCYDLSAYETVVVPKIAIHFLGGV---- 416 (477)
Q Consensus 342 ~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~---- 416 (477)
+...+....+||||||++++||+++|++|.++|.+.+...+...+. ...+..|+.........+|+|+|+|.|+.
T Consensus 278 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~ 357 (455)
T 3lpj_A 278 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQS 357 (455)
T ss_dssp CGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEE
T ss_pred cccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCce
Confidence 7665544689999999999999999999999999975321111110 02356898776555557999999996543
Q ss_pred -EEEEcCCCeEEEeCCC----eEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 417 -DLELDVRGTLVVASVS----QVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 417 -~~~l~~~~~l~~~~~~----~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+++|++++|+++.... ..|++|.... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 358 ~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~-~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 358 FRITILPQQYLRPVEDVATSQDDCYKFAISQ-SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp EEEEECHHHHEEEECCTTCCSCEEEEECEEE-ESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred EEEEECHHHheEeccCCCCCCceEEEEeccC-CCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 5999999999987432 5899753321 2357999999999999999999999999999995
No 31
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=1.7e-53 Score=428.29 Aligned_cols=291 Identities=20% Similarity=0.313 Sum_probs=239.6
Q ss_pred CceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 011804 129 ADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (477)
Q Consensus 129 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~ 208 (477)
+.+|+++|.|| +|++.|+|||||+++||+|.+|..|..+.++.|||++|+ ++.. +
T Consensus 14 ~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~-----------------~----- 68 (323)
T 1bxo_A 14 DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS-----------------G----- 68 (323)
T ss_dssp GSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE-----------------E-----
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC-----------------C-----
Confidence 48999999999 999999999999999999999998766677999999999 6542 2
Q ss_pred CCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCC---CCCCceeecCCCCccce----------
Q 011804 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSII---------- 275 (477)
Q Consensus 209 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl~---------- 275 (477)
|.|.++|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+.| ...+||||||++.++.+
T Consensus 69 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~----v~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~ 142 (323)
T 1bxo_A 69 YTWSISYGDGSSASGNVFTDSVTVGGVT----AH--GQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFD 142 (323)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CeEEEEeCCCCeEEEEEEEEEEEECCEE----EC--cEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHH
Confidence 7999999999889999999999999865 78 99999999876533 36899999999877653
Q ss_pred ---eeccccceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCE
Q 011804 276 ---TRTNTSYFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGA 351 (477)
Q Consensus 276 ---sQ~~~~~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~ 351 (477)
+|+....||+||.+. ..|.|+|||+|+. +.+++.|+|+... ..+|.|.|++|+|++ +. .. ..++
T Consensus 143 ~l~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~--~~--~~---~~~a 210 (323)
T 1bxo_A 143 TVKSSLAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS--QS--GD---GFSG 210 (323)
T ss_dssp HHGGGBSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT--EE--EE---EEEE
T ss_pred HHHHhcCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC--cc--CC---CceE
Confidence 233233399999874 4799999999976 8999999999852 568999999999999 21 11 1369
Q ss_pred EEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeC-
Q 011804 352 IIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS- 430 (477)
Q Consensus 352 iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~- 430 (477)
||||||++++||+++|++|.+++..+. +....+. |.++|. ..+|+|+|+| ||++++||+++|+++..
T Consensus 211 iiDSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g~-------~~~~C~--~~~P~i~f~f-gg~~~~l~~~~~~~~~~~ 278 (323)
T 1bxo_A 211 IADTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAGG-------YVFDCS--TNLPDFSVSI-SGYTATVPGSLINYGPSG 278 (323)
T ss_dssp EECTTCSSEEECHHHHHHHHTTSTTCE--EETTTTE-------EEECTT--CCCCCEEEEE-TTEEEEECHHHHEEEECS
T ss_pred EEeCCCCceeCCHHHHHHHHHhCCCce--EcCcCCE-------EEEECC--CCCceEEEEE-CCEEEEECHHHeEEeccC
Confidence 999999999999999999999884321 2222222 455565 3689999999 89999999999998763
Q ss_pred CCeEEEE-EEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 431 VSQVCLG-FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 431 ~~~~Cl~-~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
....|++ |...+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 279 ~~~~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 279 DGSTCLGGIQSNS-GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp SSSCEEESEEECT-TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCCeEEEEEECCC-CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 3478995 76653 34679999999999999999999999999874
No 32
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.8e-53 Score=444.93 Aligned_cols=298 Identities=19% Similarity=0.299 Sum_probs=247.0
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC--CccCCCCCCccCCCCCccceecCCCccccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI--HCFQQRDPFFYASKSKTFFKIPCNSTSCRILR 196 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~--~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 196 (477)
.+|+. ++.+.+|+++|+||||+|++.|++||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 128 ~~pL~--n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~--~~~ydps~SsT~~~~~---------- 193 (451)
T 3qvc_A 128 NVELK--DLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCES--KNHYDSSKSKTYEKDD---------- 193 (451)
T ss_dssp CCCGG--GGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTT--SCCBCGGGCTTCEEEE----------
T ss_pred cccee--ecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCC--CCCCCCCCCcccccCC----------
Confidence 44544 445689999999999999999999999999999999996 4854 4899999999999853
Q ss_pred cCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEec----CCCCC--CCCCceeecCCC
Q 011804 197 ESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINN----SSGDK--SGASGIMGLDRS 270 (477)
Q Consensus 197 ~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~----~~g~~--~~~~GilGLg~~ 270 (477)
|.|.+.|+||+ +.|.+++|+|+|++.. ++ +.|||++. ..+ | ...+||||||++
T Consensus 194 ------------~~f~i~YgdGs-~~G~~~~Dtv~igg~~----v~---~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~ 252 (451)
T 3qvc_A 194 ------------TPVKLTSKAGT-ISGIFSKDLVTIGKLS----VP---YKFIEMTEIVGFEPF-YSESDVDGVFGLGWK 252 (451)
T ss_dssp ------------EEEEEECSSEE-EEEEEEEEEEEETTEE----EE---EEEEEEEEEEECTTH-HHHSCCCEEEECSSB
T ss_pred ------------CEEEEEECCCE-EEEEEEEEEEEECCEE----EE---EEEEEEEeccccCCC-ccCCCCCEEEecCCC
Confidence 78999999998 9999999999998754 43 99999998 655 4 268999999998
Q ss_pred Ccc------ceeecccc------ceEEecCCCCCCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCE
Q 011804 271 PVS------IITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGK 337 (477)
Q Consensus 271 ~~S------l~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~ 337 (477)
.++ ++.|+..+ .||+||.+.....|.|+|||+|+. +.+++.|+|+.. +.+|.|.++ |+||++
T Consensus 253 ~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~Vgg~ 327 (451)
T 3qvc_A 253 DLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VHFGNV 327 (451)
T ss_dssp CSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EEETTE
T ss_pred cccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EEECCc
Confidence 764 33334333 299999987666899999999986 789999999986 679999999 999998
Q ss_pred EeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcE
Q 011804 338 KLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVD 417 (477)
Q Consensus 338 ~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~ 417 (477)
.. ....+||||||++++||++++++|.+++++. +....+ +|.++|. ...+|+|+|+| ||++
T Consensus 328 -~~------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~---~~~~~g-------~y~v~C~-~~~~P~itf~f-gg~~ 388 (451)
T 3qvc_A 328 -SS------KKANVILDSATSVITVPTEFFNQFVESASVF---KVPFLS-------LYVTTCG-NTKLPTLEYRS-PNKV 388 (451)
T ss_dssp -EE------EEEEEEECTTBSSEEECHHHHHHHHTTTTCE---ECTTSS-------CEEEETT-CTTCCCEEEEE-TTEE
T ss_pred -cC------CCceEEEeCCCccccCCHHHHHHHHHHcCCe---ecCCCC-------eEEeeCC-cCcCCcEEEEE-CCEE
Confidence 11 1136999999999999999999999988653 221122 2677777 56799999999 7899
Q ss_pred EEEcCCCeEEEeC--CCeEEE-EEEecCCCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011804 418 LELDVRGTLVVAS--VSQVCL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 418 ~~l~~~~~l~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~ 475 (477)
++||+++|+++.. .+..|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 389 i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 389 YTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999999864 357898 677663225789999999999999999999999999874
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=1.6e-52 Score=424.04 Aligned_cols=296 Identities=22% Similarity=0.349 Sum_probs=240.8
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccC
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRES 198 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~ 198 (477)
++|+... +.+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++..
T Consensus 4 ~~~l~n~---~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~~~-------------- 56 (340)
T 1wkr_A 4 SVPATNQ---LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSATS-------------- 56 (340)
T ss_dssp EEEEEEC---SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEEEE--------------
T ss_pred cEeeecc---CcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCccccC--------------
Confidence 4566542 479999999999999999999999999999875 4799999886543
Q ss_pred CCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCCCCCCCCceeecCCCCccce---
Q 011804 199 FPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSII--- 275 (477)
Q Consensus 199 ~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g~~~~~~GilGLg~~~~Sl~--- 275 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ |...+||||||++.+++.
T Consensus 57 ----------~~~~i~Yg~Gs-~~G~~~~Dtv~~g~~~----v~--~~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~~~ 118 (340)
T 1wkr_A 57 ----------DKVSVTYGSGS-FSGTEYTDTVTLGSLT----IP--KQSIGVASRDSG-FDGVDGILGVGPVDLTVGTLS 118 (340)
T ss_dssp ----------EEEEEECSSCE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEEES-CTTCSEEEECSCGGGGTTSEE
T ss_pred ----------ceEEEEECCcE-EEEEEEEEEEEECCEE----Ec--ceEEEEEEccCC-CcCCCcEEECCcccccccccc
Confidence 78999999997 8999999999998864 78 999999999876 567999999999887653
Q ss_pred -----------eeccc------cceEEecCCCC---CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEE
Q 011804 276 -----------TRTNT------SYFSYCLPSPY---GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISV 334 (477)
Q Consensus 276 -----------sQ~~~------~~FS~cL~~~~---~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsv 334 (477)
.++.. ..||+||.+.. ...|.|+|||+|+. +.+++.|+|+..++....+|.|. ++|+|
T Consensus 119 ~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v 197 (340)
T 1wkr_A 119 PHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRY 197 (340)
T ss_dssp SCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEE
T ss_pred ccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEE
Confidence 22221 22999998642 24799999999976 88999999999865446799999 99999
Q ss_pred CC-EEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEc
Q 011804 335 GG-KKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFL 413 (477)
Q Consensus 335 gg-~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~ 413 (477)
++ +.+.. .+++||||||++++||+++|++|.+++++. +....+. |.++|.....+|+|+|+|
T Consensus 198 ~~~~~l~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~---~~~~~g~-------~~~~C~~~~~~p~i~f~f- 260 (340)
T 1wkr_A 198 GSSTSILS------STAGIVDTGTTLTLIASDAFAKYKKATGAV---ADNNTGL-------LRLTTAQYANLQSLFFTI- 260 (340)
T ss_dssp TTTEEEEE------EEEEEECTTBCSEEECHHHHHHHHHHHTCE---ECTTTSS-------EEECHHHHHTCCCEEEEE-
T ss_pred CCCeEccC------CCeEEEeCCcccccCCHHHHHHHHHhhCCE---EcCCCCe-------EEeeccccccCCcEEEEE-
Confidence 98 87742 136999999999999999999998888654 2222222 666776656789999999
Q ss_pred CCcEEEEcCCCeEEEeC-------CCeEEE-EEEecCC---CCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804 414 GGVDLELDVRGTLVVAS-------VSQVCL-GFATYPP---DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477 (477)
Q Consensus 414 gg~~~~l~~~~~l~~~~-------~~~~Cl-~~~~~~~---~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~ 477 (477)
+|+++.|++++|+++.. ....|+ +|.+... .+..||||++|||++|+|||++++|||||+++|+
T Consensus 261 ~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 261 GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 78999999999997642 124676 7776421 2346999999999999999999999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=8.2e-42 Score=328.75 Aligned_cols=218 Identities=23% Similarity=0.355 Sum_probs=183.0
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC---CccCCCCCCccCCCCCccceecCCCcccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPFFYASKSKTFFKIPCNSTSCRIL 195 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 195 (477)
.+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 4 ~~~l~--n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~--------- 70 (239)
T 1b5f_A 4 VVALT--NDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKENG--------- 70 (239)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred eeeee--ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeCC---------
Confidence 34544 345689999999999999999999999999999999996 48754 799999999998863
Q ss_pred ccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCceeeecCeEEEEEecCCC-CC--CCCCceeecCCCCc
Q 011804 196 RESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPV 272 (477)
Q Consensus 196 ~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~v~~~~~~fG~~~~~~g-~~--~~~~GilGLg~~~~ 272 (477)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++.+
T Consensus 71 -------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~----v~--~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~ 130 (239)
T 1b5f_A 71 -------------TFGAIIYGTGS-ITGFFSQDSVTIGDLV----VK--EQDFIEATDEADNVFLHRLFDGILGLSFQTI 130 (239)
T ss_dssp -------------EEEEEECSSCE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEECHHHHTTCSCCEEEECSCCSS
T ss_pred -------------cEEEEEECCCc-EEEEEEEEEEEECCcE----Ec--cEEEEEEEeccCccccccCcceEEecCcccc
Confidence 68999999997 7999999999998765 88 999999998754 12 36899999999988
Q ss_pred c------ceeecc--ccceEEecCCCC--CCcceEEecccccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeec
Q 011804 273 S------IITRTN--TSYFSYCLPSPY--GSTGYITFGKTDTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPF 341 (477)
Q Consensus 273 S------l~sQ~~--~~~FS~cL~~~~--~~~G~L~fGg~d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~ 341 (477)
+ +++|.. ...||+||++.. ...|.|+|||+|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.+
T Consensus 131 s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~ 206 (239)
T 1b5f_A 131 SVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTGF 206 (239)
T ss_dssp SCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECCT
T ss_pred ccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEecc
Confidence 7 334422 223999998753 35799999999976 788999999987 56899999999999998765
Q ss_pred CCCcccCCCEEEeccccceeccHHHHHHHHHHHHH
Q 011804 342 NTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHK 376 (477)
Q Consensus 342 ~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~ 376 (477)
.... .++||||||++++||+++|++|.+++++
T Consensus 207 ~~~~---~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 207 CAPG---CQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp TTTC---EEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred cCCC---CEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 4332 3699999999999999999999998754
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=6.5e-36 Score=287.75 Aligned_cols=214 Identities=20% Similarity=0.310 Sum_probs=171.7
Q ss_pred eeeecCeEEEEEecCCC-CCC--CCCceeecCCCCccce------eecccc------ceEEecCCCCCC--cceEEeccc
Q 011804 240 YFTRYPFLLGCINNSSG-DKS--GASGIMGLDRSPVSII------TRTNTS------YFSYCLPSPYGS--TGYITFGKT 302 (477)
Q Consensus 240 ~v~~~~~~fG~~~~~~g-~~~--~~~GilGLg~~~~Sl~------sQ~~~~------~FS~cL~~~~~~--~G~L~fGg~ 302 (477)
.++ ++.|||++...+ .|. ..+||||||++.++.. .|+..+ .||+||.+.... .|.|+|||+
T Consensus 4 ~v~--~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~ 81 (241)
T 1lya_B 4 KVE--RQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGT 81 (241)
T ss_dssp EEE--EEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSC
T ss_pred EEC--CeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCc
Confidence 467 999999999876 343 6899999999877542 333322 299999987543 799999999
Q ss_pred ccc-CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhc
Q 011804 303 DTV-NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKY 381 (477)
Q Consensus 303 d~~-~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~ 381 (477)
|+. +.+++.|+|+.. ..+|.|.|++|+|+++.+.. .. ...+||||||++++||+++|++|.+++++. +
T Consensus 82 d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~-~~---~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~---~ 150 (241)
T 1lya_B 82 DSKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTLC-KE---GCEAIVDTGTSLMVGPVDEVRELQKAIGAV---P 150 (241)
T ss_dssp CGGGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEES-TT---CEEEEECTTCSSEEECHHHHHHHHHHHTCE---E
T ss_pred CHHHcCCceEEEECcc----ccEEEEEEeEEEECCeeEec-cC---CCEEEEECCCccccCCHHHHHHHHHHhCCe---e
Confidence 976 789999999987 67899999999999987531 11 136999999999999999999999998653 1
Q ss_pred ccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCC--CeEEE-EEEecC---CCCCeeeechhhh
Q 011804 382 KKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASV--SQVCL-GFATYP---PDPNSITLGNVQQ 455 (477)
Q Consensus 382 ~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~f~ 455 (477)
...+. |.++|.....+|+|+|+| +|++++|++++|+++... ...|+ +|.... ...+.||||++||
T Consensus 151 -~~~g~-------~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl 221 (241)
T 1lya_B 151 -LIQGE-------YMIPCEKVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFI 221 (241)
T ss_dssp -EETTE-------EEEEGGGGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHH
T ss_pred -ccCCc-------EEEECCCCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHh
Confidence 11222 555666656899999999 799999999999998742 46899 688653 1356799999999
Q ss_pred cceEEEEECCCCEEEEeeCC
Q 011804 456 RGHEVHYDVAGRRLGFGPGN 475 (477)
Q Consensus 456 ~~~~vvfD~~~~rIGFa~~~ 475 (477)
|++|+|||++++|||||+++
T Consensus 222 ~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 222 GRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCCCEEEEEEcC
Confidence 99999999999999999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.88 E-value=7.2e-23 Score=168.41 Aligned_cols=89 Identities=27% Similarity=0.554 Sum_probs=78.4
Q ss_pred eeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCC----CccCCCCCCccCCCCCccceecCCCccccc
Q 011804 119 TFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRI 194 (477)
Q Consensus 119 ~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 194 (477)
.+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|..+ +.|||++|+||+...
T Consensus 4 ~~~l~--n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~--~~y~p~~SsT~~~~~-------- 71 (97)
T 1lya_A 4 PEVLK--NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH--HKYNSDKSSTYVKNG-------- 71 (97)
T ss_dssp EEEEE--EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred eEeeE--ECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC--CCCCchhCCCceeCC--------
Confidence 34443 345689999999999999999999999999999999997 48654 899999999999863
Q ss_pred cccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcc
Q 011804 195 LRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQE 234 (477)
Q Consensus 195 ~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~ 234 (477)
|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 72 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 --------------TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred --------------CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 78999999998 89999999999975
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.65 E-value=2.3e-16 Score=126.92 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=67.8
Q ss_pred eeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCC--CeEEE-EEEecC--CCCCeeeechhhhcceEEEEECCCCEE
Q 011804 395 YDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASV--SQVCL-GFATYP--PDPNSITLGNVQQRGHEVHYDVAGRRL 469 (477)
Q Consensus 395 y~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~--~~~Cl-~~~~~~--~~~~~~IlG~~f~~~~~vvfD~~~~rI 469 (477)
|.++|.....+|+|+|+| ||++++|++++|+++... ...|+ +|+..+ ...+.||||++|||++|+|||++++||
T Consensus 3 y~v~C~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ri 81 (87)
T 1b5f_B 3 LQVDCNTLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLV 81 (87)
T ss_dssp CEECGGGGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEE
T ss_pred EEEECCCCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEE
Confidence 567777767899999999 799999999999988642 46899 687653 234689999999999999999999999
Q ss_pred EEeeCC
Q 011804 470 GFGPGN 475 (477)
Q Consensus 470 GFa~~~ 475 (477)
|||+++
T Consensus 82 GfA~~~ 87 (87)
T 1b5f_B 82 GFAEAA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=89.14 E-value=0.99 Score=38.56 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=24.2
Q ss_pred eeeechhhhcceEEEEECCCCEEEEe
Q 011804 447 SITLGNVQQRGHEVHYDVAGRRLGFG 472 (477)
Q Consensus 447 ~~IlG~~f~~~~~vvfD~~~~rIGFa 472 (477)
..|||..||+.+-+..|+.+++|-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 48999999999999999999999885
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=88.13 E-value=1 Score=38.76 Aligned_cols=109 Identities=23% Similarity=0.238 Sum_probs=61.7
Q ss_pred eEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhh-cc-cccCCCccccceeeccCCc
Q 011804 324 FYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKK-YK-KAKGLEDLLDTCYDLSAYE 401 (477)
Q Consensus 324 ~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~-~~-~~~~~~~~~~~Cy~~~~~~ 401 (477)
.++|+ ..|+|+.+. +++|||.+.+.++.+..+.+--. ..... +. ...+. .. ..+
T Consensus 24 ~l~v~---~~Ing~~v~----------~LVDTGAs~s~Is~~~A~rlGL~--~~~~~~~~~~a~g~-G~-~~~------- 79 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------AFVDSGAQMTIMSQACAERCNIM--RLVDRRWAGVAKGV-GT-QRI------- 79 (148)
T ss_dssp CCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHTTCG--GGEEGGGCEECCC-----CEE-------
T ss_pred EEEEE---EEECCEEEE----------EEEeCCCCcEeeCHHHHHHcCCc--cccCcceeEEEEcC-Cc-cEE-------
Confidence 45555 448888754 89999999999999887765110 00000 00 00010 00 000
Q ss_pred ccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEEEecCCCCCeeeechhhhcceEEEEECCCCEEEEee
Q 011804 402 TVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 473 (477)
Q Consensus 402 ~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~~~~~IlG~~f~~~~~vvfD~~~~rIGFa~ 473 (477)
.-.++...+.+ |+..+ .|-++.-. ...-..|||..+|+.+-.+.|++++++-|..
T Consensus 80 ~g~v~~~~I~I-g~~~~---------------~~~~~Vle-~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 80 IGRVHLAQIQI-EGDFL---------------QCSFSILE-DQPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp EEEEEEEEEEE-TTEEE---------------EEEEEEET-TCSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred EEEEEEEEEEE-CCEEE---------------EEEEEEeC-CCCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 01233445555 43321 23222221 1223489999999999999999999998864
No 40
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=79.97 E-value=1.7 Score=35.06 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.6
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeee
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQ 159 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~ 159 (477)
-+++|.|| .|.+.+++|||.|++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 36789999 899999999999999987
No 41
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=79.09 E-value=2.3 Score=33.98 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=24.5
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecCC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
+++|.|| .|.+.+++|||.|++-+.-..
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~ 37 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMS 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEeccc
Confidence 5789999 899999999999999997543
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=73.98 E-value=3.8 Score=32.66 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=24.3
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecCC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
++++.|| +|.+.+++|||.|++-+.-..
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5789999 999999999999999996543
No 43
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=69.53 E-value=3.7 Score=34.85 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=25.7
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeee
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQ 159 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~ 159 (477)
+.+++++.|+ ++++.+++|||++.+-+.
T Consensus 25 ~~~~v~v~In--G~~~~~LvDTGAs~s~is 52 (148)
T 2i1a_A 25 PMLYINIEIN--NYPVKAFVDTGAQTTIMS 52 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred ceEEEEEEEC--CEEEEEEEECCCCccccC
Confidence 7789999998 889999999999998885
No 44
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=68.27 E-value=4.6 Score=32.98 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.3
Q ss_pred EEEEEEC---CCCcEEEEEEEcCCCceeeecCCC
Q 011804 133 YIVVAIG---EPKQYVSLLLDTGSDVTWTQCKPC 163 (477)
Q Consensus 133 ~~~v~iG---tP~q~~~v~~DTGS~~~Wv~c~~C 163 (477)
.++|.|| +|+|.+..++|||-|++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4566666 789999999999999999976544
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=67.62 E-value=4.8 Score=33.08 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.6
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
++ |.|| .|.+.+++|||.|++-+.-.
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 45 8999 89999999999999988643
No 46
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=61.10 E-value=8.4 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.3
Q ss_pred EEEEEECCCCcEEEEEEEcCCCceeeecCC
Q 011804 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 133 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
.+++.|| .|.+..++|||-|++-+.-..
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEeccc
Confidence 5778898 899999999999999997543
No 47
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=59.11 E-value=13 Score=29.14 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=26.9
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
.||.... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~n~~--~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 5 EVLKNYM--DAQYYGE---IGIGT-----PPQCFT---VVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred EeeEECC--CCeEEEE---EEECC-----CCeEEE---EEEeCCCCceEEeEc
Confidence 5664321 4567765 77884 233344 999999999999965
No 48
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=59.00 E-value=7.6 Score=33.22 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=26.0
Q ss_pred ceEEEEEEECCCCcEEEEEEEcCCCceeeec
Q 011804 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQC 160 (477)
Q Consensus 130 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 160 (477)
..|++++.|. .+++.+++|||++.+.+.-
T Consensus 23 ~~l~v~~~In--g~~v~~LVDTGAs~s~Is~ 51 (148)
T 3s8i_A 23 TMLYINCKVN--GHPLKAFVDSGAQMTIMSQ 51 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCCcEeeCH
Confidence 6789999998 8999999999999998854
No 49
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=46.45 E-value=18 Score=30.33 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=24.5
Q ss_pred eEEEEEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 131 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
.-++++.|+ .|.+.+++|||.+.+-+.-.
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 346788898 89999999999999998654
No 50
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=46.05 E-value=23 Score=33.98 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 308 KFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 308 ~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
+.+..+|+.. ...|.++ |+||.+. |. ++||||++.+++|..-
T Consensus 4 g~v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~ 45 (323)
T 1bxo_A 4 GVATNTPTAN----DEEYITP---VTIGGTT-------LN---LNFDTGSADLWVFSTE 45 (323)
T ss_dssp EEEEEEECGG----GSCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTT
T ss_pred CceeeeecCC----CCEEEEE---EEECCEE-------EE---EEEeCCCcceEEecCC
Confidence 3455566554 5567765 6788554 33 9999999999999754
No 51
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=43.96 E-value=17 Score=30.05 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.2
Q ss_pred ECCCCcEEEEEEEcCCCceeeecCC
Q 011804 138 IGEPKQYVSLLLDTGSDVTWTQCKP 162 (477)
Q Consensus 138 iGtP~q~~~v~~DTGS~~~Wv~c~~ 162 (477)
|| .|.+..++|||-|++-+.-..
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 55 678899999999999997543
No 52
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=43.13 E-value=20 Score=32.38 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.9
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeec
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQC 160 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 160 (477)
-.++|.|| .|.+.+++|||.|++-+.-
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 46889999 8999999999999999864
No 53
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=42.28 E-value=27 Score=33.45 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 308 KFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 308 ~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
+.+..+|+.. ...|.++ |+||.+. |. ++||||++.+++|..-
T Consensus 4 ~~v~~~~~~~----~~~Y~~~---i~iG~q~-------~~---v~~DTGSs~lWv~~~~ 45 (323)
T 1izd_A 4 GSVTTNPTSN----DEEYITQ---VTVGDDT-------LG---LDFDTGSADLWVFSSQ 45 (323)
T ss_dssp EEEEEEECGG----GCCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTT
T ss_pred CceeeeEcCC----CCEEEEE---EEECCEE-------EE---EEEcCCCcceEEecCC
Confidence 3445556544 5567765 7788544 33 9999999999999754
No 54
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=39.90 E-value=26 Score=33.58 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=27.7
Q ss_pred eeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
+.-+|+.. ...|.++ |+||.++ |. ++||||++.+++|..-
T Consensus 5 v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~ 44 (325)
T 1ibq_A 5 AVTTPQNN----DEEYLTP---VTVGKST-------LH---LDFDTGSADLWVFSDE 44 (325)
T ss_dssp EEEEECTT----TSCEEEE---EEEBTEE-------EE---EEEETTCCCEEEECTT
T ss_pred EEeEEcCC----CCEEEEE---EEECCEE-------EE---EEEeCCCccceEeeCC
Confidence 44455443 5567765 6677554 33 9999999999999754
No 55
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=38.20 E-value=38 Score=32.92 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 307 SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 307 ~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
.+.+...|+.... ...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDFD--LEEYAIP---VSIGT-----PGQDFY---LLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEETT--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCccceEEeecCC--CCEEEEE---EEECC-----CCcEEE---EEEcCCCCCeEECCC
Confidence 3556677887632 4567765 77883 222344 999999999999965
No 56
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=32.90 E-value=47 Score=31.67 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=28.8
Q ss_pred eeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+...||.... ...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 3 ~~~~~l~n~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 45 (323)
T 3cms_A 3 VASVPLTNYL--DSQYFGK---IYLGT-----PPQEFT---VLFDTGSSDFWVPSI 45 (323)
T ss_dssp CEEEEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred cceeeeEecc--CCEEEEE---EEECC-----CCeEEE---EEEeCCccceEEcCC
Confidence 4456665522 4567765 77884 233344 999999999999965
No 57
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=32.14 E-value=46 Score=33.25 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 308 KFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 308 ~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
......|+..+.. ...|+++ |+||. |+..|. ++||||+.++|+|-+
T Consensus 6 ~~~~~~pv~~d~~-~~~Y~~~---i~iGT-----Ppq~~~---v~~DTGS~~lWv~c~ 51 (413)
T 3vla_A 6 PSALVVPVKKDAS-TLQYVTT---INQRT-----PLVSEN---LVVDLGGRFLWVDCD 51 (413)
T ss_dssp CSEEEEEEEECTT-TCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred CccEEEEeeecCC-CCeEEEE---EEcCC-----CCcceE---EEEeCCChhhhcccC
Confidence 3445688887653 5567765 66775 344455 999999999999953
No 58
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=29.10 E-value=51 Score=29.99 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=26.5
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+||.... ...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~n~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~lWv~~~ 44 (239)
T 1b5f_A 5 VALTNDR--DTSYFGE---IGIGT-----PPQKFT---VIFDTGSSVLWVPSS 44 (239)
T ss_dssp EEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred eeeeecC--CCEEEEE---EEECC-----CCeEEE---EEEeCCCcceEEEcC
Confidence 4554422 4467665 67884 233344 999999999999864
No 59
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=28.99 E-value=56 Score=31.24 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=23.8
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 14 DDAYITP---VQIGT-----PAQTLN---LDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCCCCeEEecC
Confidence 5567664 77883 223344 999999999999964
No 60
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=27.97 E-value=34 Score=33.55 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=30.0
Q ss_pred eeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+...||.... +..|+++ |+||. |+..|. ++||||++.+++|..
T Consensus 45 ~~~~~l~n~~--d~~Y~~~---i~iGT-----PpQ~~~---v~~DTGSs~lWV~s~ 87 (370)
T 3psg_A 45 IGDEPLENYL--DTEYFGT---IGIGT-----PAQDFT---VIFDTGSSNLWVPSV 87 (370)
T ss_dssp SCCCTTGGGT--TCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred cceecceecc--CCEEEEE---EEEcC-----CCCEEE---EEEeCCCCccEEECC
Confidence 4556766532 4567765 77885 344455 999999999999963
No 61
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=27.50 E-value=62 Score=30.94 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.3
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
...|.++ |+||. |+..|. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~~ 47 (329)
T 3c9x_A 14 DSEYITS---VSIGT-----PAQVLP---LDFDTGSSDLWVFSSE 47 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBTT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCeEEecCC
Confidence 4567664 77884 223344 9999999999999753
No 62
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=26.97 E-value=67 Score=30.61 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.6
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 14 DIEYYGQ---VTIGT-----PGKKFN---LDFDTGSSDLWIAST 46 (325)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCEEEccC
Confidence 5567665 67883 222344 999999999999864
No 63
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=25.56 E-value=68 Score=31.67 Aligned_cols=42 Identities=5% Similarity=-0.057 Sum_probs=28.5
Q ss_pred EeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 312 YTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 312 ~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
..||..+. ....|+++ |.||. |+..|. ++||||++.+|+|-.
T Consensus 11 ~~pl~~~~-~~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDG-STGLHWAN---LQKRT-----PLMQVP---VLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECT-TTCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred EEeeecCC-CCceEEEE---EECCC-----CCceeE---EEEECCCCceeECCC
Confidence 46776432 24567765 66884 333354 999999999999854
No 64
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=24.02 E-value=64 Score=29.01 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=24.2
Q ss_pred EEEEEEECCCCcEEEEEEEcCCCceeeecC
Q 011804 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (477)
Q Consensus 132 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 161 (477)
=.+++.|| .|.+..++|||.|++-+.-.
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~~ 140 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEEL 140 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeecc
Confidence 46889999 89999999999999998543
No 65
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=23.52 E-value=61 Score=31.00 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=29.3
Q ss_pred eeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 310 IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 310 ~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
...+||.... +..|+++ |.||. |+..|. ++||||++.+++|..
T Consensus 7 ~~~~~l~n~~--d~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 49 (341)
T 3k1w_A 7 TSSVILTNYM--DTQYYGE---IGIGT-----PPQTFK---VVFDTGSSNVWVPSS 49 (341)
T ss_dssp CEEEEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred CccccceEcc--CCEEEEE---EEEcC-----CCcEEE---EEEeCCCcceEEccC
Confidence 4456776532 4567765 77885 233344 999999999999864
No 66
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=22.90 E-value=62 Score=30.78 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=26.7
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
.||... ....|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 4 ~~l~n~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 43 (324)
T 1am5_A 4 EQMKNE--ADTEYYGV---ISIGT-----PPESFK---VIFDTGSSNLWVSSS 43 (324)
T ss_dssp EEEEEE--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBT
T ss_pred eeeecC--CCCEEEEE---EEECC-----CCeEEE---EEEeCCCcceEEecC
Confidence 455532 14567765 66874 233344 999999999999965
No 67
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=22.88 E-value=82 Score=30.12 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=25.9
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPP 364 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~ 364 (477)
+||... ...|.++ |+||. |+..|. ++||||++.+|+|.
T Consensus 5 ~~l~n~---~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 5 VPATNQ---LVDYVVN---VGVGS-----PATTYS---LLVDTGSSNTWLGA 42 (340)
T ss_dssp EEEEEC---SSCEEEE---EEETT-----TTEEEE---EEEETTCCCCEECS
T ss_pred Eeeecc---CcEEEEE---EEECC-----CCcEEE---EEEeCCChhheecC
Confidence 455542 3467765 77884 233344 99999999999985
No 68
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=22.15 E-value=83 Score=30.06 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=26.2
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
.|+... ...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~~~---~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 43 (334)
T 1j71_A 5 TTLINE---GPSYAAD---IVVGS-----NQQKQT---VVIDTGSSDLWVVDT 43 (334)
T ss_dssp EEEEEC---SSSEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEEE
T ss_pred EEEecC---CcEEEEE---EEEcC-----CCcEEE---EEEcCCCCCEEEecC
Confidence 455442 4567765 67884 233344 999999999999843
No 69
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=21.95 E-value=84 Score=29.99 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=26.3
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+|+... ..+|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~~~---~~~Y~~~---i~iGt-----P~Q~~~---v~~DTGSs~~Wv~~~ 43 (339)
T 3fv3_A 5 LSLINE---GPSYASK---VSVGS-----NKQQQT---VIIDTGSSDFWVVDS 43 (339)
T ss_dssp EEEEEC---SSSEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEEE
T ss_pred eEEEcC---CCEEEEE---EEEcC-----CCcEEE---EEEeCCCCceEEecC
Confidence 455542 4567776 67884 223344 999999999999843
No 70
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=20.96 E-value=57 Score=32.18 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~ 366 (477)
.||.... +..|+++ |+||. |+..|. ++||||++.+|+|...
T Consensus 53 ~~l~n~~--~~~Y~~~---I~IGT-----P~Q~f~---vi~DTGSs~lWV~s~~ 93 (383)
T 2x0b_A 53 VILTNYM--DTQYYGE---IGIGT-----PPQTFK---VVFDTGSSNVWVPSSK 93 (383)
T ss_dssp EEEEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBTT
T ss_pred EeeeecC--CCEEEEE---EEECC-----CCcEEE---EEEeCCCCCeEEeccC
Confidence 5665422 4567765 77874 334455 9999999999999753
No 71
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=20.95 E-value=86 Score=29.83 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=26.4
Q ss_pred eecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 313 TPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 313 tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+|+.... ...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~~~~--~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~lWv~~~ 44 (329)
T 1dpj_A 5 VPLTNYL--NAQYYTD---ITLGT-----PPQNFK---VILDTGSSNLWVPSN 44 (329)
T ss_dssp EECEEET--TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred eeeeecC--CCEEEEE---EEECC-----CCcEEE---EEEeCCCcCeEEecC
Confidence 4554322 3457665 77884 223344 999999999999865
No 72
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=20.90 E-value=98 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.3
Q ss_pred EEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHH
Q 011804 329 LTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIY 367 (477)
Q Consensus 329 l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y 367 (477)
+..|.|+|+... +++|||.-.|.+.....
T Consensus 10 ~v~v~I~Gq~~e----------~LLDTGAD~TVl~~~~w 38 (104)
T 1fmb_A 10 TTIVLINDTPLN----------VLLDTGADTSVLTTAHY 38 (104)
T ss_dssp EEEEEETTEEEE----------EEECTTCSSCEEEHHHH
T ss_pred EEEEEECCEEEE----------EEeccCCCcEEEccccC
Confidence 345889998643 99999999999997654
No 73
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=20.71 E-value=50 Score=31.30 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=24.1
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
+..|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 10 d~~Y~~~---i~iGt-----P~Q~~~---v~~DTGSs~~Wv~~~ 42 (320)
T 4aa9_A 10 DSQYFGK---IYIGT-----PPQEFT---VVFDTGSSDLWVPSI 42 (320)
T ss_dssp CCCCEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEeCCCCceEEcCC
Confidence 4567766 67884 333454 999999999999864
No 74
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=20.12 E-value=1.2e+02 Score=29.04 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.4
Q ss_pred CeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHH
Q 011804 322 SEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPP 365 (477)
Q Consensus 322 ~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~ 365 (477)
...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 11 ~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 43 (342)
T 2qzx_A 11 AITYTAD---ITVGS-----DNQKLN---VIVDTGSSDLWIPDS 43 (342)
T ss_dssp SSCEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEEE
T ss_pred CeEEEEE---EEECC-----CCcEEE---EEEeCCCCCeEEecC
Confidence 4567765 67883 233344 999999999999843
Done!