BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011806
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 15/340 (4%)
Query: 145 IGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204
+ +H+ ++ AI+ GT+ +KWL ++GC+A TELGHGSNV+G+ET T D
Sbjct: 99 VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPK 158
Query: 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG-NICP 263
T EF+I+TP ++A K+W GG +TH +V+++L NGK+ G+H FI Q+R + P
Sbjct: 159 TDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLP 218
Query: 264 NIRIADCGHKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRF 320
NI + D G K+G N +DNG + FD+VRIPR+ +L ++ V+ +G+Y+ S P Q
Sbjct: 219 NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS-DVPKQLV 277
Query: 321 AAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRL 380
M + V A +++ +A + IA RYS RR F G E ++DY + Q RL
Sbjct: 278 YGTMVYVRQTIVADASNALSRA---VCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 334
Query: 381 LPLLAKSYAASCAANYLKMMYVNRTPQSNKT-------IHVVSSAFKAILTWHNMRTLQE 433
PLLA +YA +LK +Y + T + + H ++ K++ T ++E
Sbjct: 335 FPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEE 394
Query: 434 CREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
CR+ CGG G + + L + T+EGDN VL QV
Sbjct: 395 CRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQV 434
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 188/338 (55%), Gaps = 15/338 (4%)
Query: 147 VHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206
+H+ ++ AI+ GT + EKWL ++GC+A TELGHGSNV+G+ET T+D T
Sbjct: 120 LHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTD 179
Query: 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNI-CPNI 265
EF+I++P ++ K+W GG +TH +V+++L +GK+ GV+ FI Q+R + P +
Sbjct: 180 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGV 239
Query: 266 RIADCGHKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAA 322
+ D G K G N +DNG + FD+VRIPR+ +L V+ V+ +G+Y+ S P Q
Sbjct: 240 TVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQS-DIPRQLLYG 298
Query: 323 FMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLP 382
M + + I+A +S+ ++ + IA RYS RR F G E ++DY + Q RL P
Sbjct: 299 TMVYVR--QSIVADASLAMSR-AVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFP 355
Query: 383 LLAKSYAASCAANYLKMMYVNRTPQ-------SNKTIHVVSSAFKAILTWHNMRTLQECR 435
LLA +YA +LK +Y + T + + H ++ K++ T ++ECR
Sbjct: 356 LLASAYAFRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECR 415
Query: 436 EACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
+ CGG G + + L + T+EGDN VL QV
Sbjct: 416 KLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLQLQV 453
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 165/327 (50%), Gaps = 23/327 (7%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
T E++ N + G +A TE+GHG+++RG+ET TYD T EFI+N+P ++ K
Sbjct: 115 ATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIK 174
Query: 220 YWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRD-AAGNICPNIRIADCGHKIGLNG 278
+W GG + H IV +QL G+ G+HAF+ IR+ P I + D G K G
Sbjct: 175 WWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEE 234
Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSG-----RVI 333
+DNG + DN RIPREN+L A V PDG Y+ + + LT G R
Sbjct: 235 MDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSN----------KLTYGTMVFVRSF 284
Query: 334 IAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCA 393
+ G++ IAIRYS RR I + PE +LD+ + Q +L PLLA +YA
Sbjct: 285 LVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFV 344
Query: 394 ANYLKMMYVNRTPQSNK-------TIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTE 446
Y+K Y+ + +H +++ KA TW ++ECR ACGG G
Sbjct: 345 GRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHS 404
Query: 447 NRVGHLKGEFDVQLTFEGDNNVLMQQV 473
+ + ++ F TFEG+N V+M Q
Sbjct: 405 SGIPNIYVTFTPACTFEGENTVMMLQT 431
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 140 SLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199
S + + V+ L+ G I FG+ + ++W+ N +GCFA++E G+GS+ T
Sbjct: 87 STGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTA 146
Query: 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG 259
+ ++ +++N K WI + A+ T+VF+ + + +N+G+ AF+ +
Sbjct: 147 REEGDS--WVLN-----GTKAWITNSW-EASATVVFASTDRSRQNKGISAFLVPMP---- 194
Query: 260 NICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQR 319
P + + K+G+ + F++ RIP+ENLL +P
Sbjct: 195 --TPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLG----------------EPGMG 236
Query: 320 FAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359
F M L GR+ IA ++ A+ L A++Y+ +R AF
Sbjct: 237 FKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAF 276
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 130/334 (38%), Gaps = 45/334 (13%)
Query: 137 FDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIE 196
+D +AI + L I FGT+ EK+L LG F +TE G++ G +
Sbjct: 82 YDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQ 141
Query: 197 TVTTYDANTGEFIINTPCESAQKYWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQI 254
T+ T + + G + +N K +I GGAA+ IVF+ + + N G+ AFI +
Sbjct: 142 TIATKN-DDGTYTLN-----GSKIFITNGGAAD---IYIVFAMTDKSKGNHGITAFILE- 191
Query: 255 RDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIK 314
+ P K+G++ + F +V++P EN+L
Sbjct: 192 -----DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLG---------------- 230
Query: 315 DPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYP 374
+ + F M L GR+ +A ++ A+ LA A+ YS R F + +
Sbjct: 231 EEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLA 290
Query: 375 SHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQEC 434
+ ++ Y A+C Q K V ++ K + + MR E
Sbjct: 291 DMKMQIEAARNLVYKAAC------------KKQEGKPFTVDAAIAKRVASDVAMRVTTEA 338
Query: 435 REACGGQGLKTENRVGHLKGEFDVQLTFEGDNNV 468
+ GG G E V + + +EG N V
Sbjct: 339 VQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEV 372
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 30/220 (13%)
Query: 140 SLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199
S + + V+ L+ G I FG++ + W+ + +GCFA++E G+GS+ T
Sbjct: 83 STGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTA 142
Query: 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG 259
+ ++ +++N K WI A A+ +VF+ + +N+ + AF+ +
Sbjct: 143 RAEGDS--WVLN-----GTKAWITNAW-EASAAVVFASTDRALQNKSISAFLVPMP---- 190
Query: 260 NICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQR 319
P + + K+G+ G + F++ RIP++++L +P
Sbjct: 191 --TPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILG----------------EPGMG 232
Query: 320 FAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359
F M L GR+ IA ++ A+ L A+ Y+ +R AF
Sbjct: 233 FKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAF 272
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 58/349 (16%)
Query: 133 VTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV 192
+ G+ D + I +G H + I FGT+ EK+L + + F +TE GS+
Sbjct: 98 IVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDA 157
Query: 193 RGIETVTTYDANTGEFIINTPCE-----SAQKYWI--GGAANHATHTIVFSQLEINGKNQ 245
I T + +PC + K WI GG A+ T VF++ +
Sbjct: 158 ASIRTSA----------VPSPCGKYYTLNGSKLWISNGGLADIFT---VFAKTPVTDPAT 204
Query: 246 G-----VHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSV 300
G + AF+ + R G I K+G+ + ++FD VR+P EN+L V
Sbjct: 205 GAVKEKITAFVVE-RGFGG-----ITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEV 258
Query: 301 ADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360
F M L +GR +A + + +A A+ ++ +R F
Sbjct: 259 GS----------------GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFG 302
Query: 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFK 420
+ ++ Q +L ++ Y A Y+ +++ + +S F
Sbjct: 303 EK-------IHNFGLIQEKLARMVMLQYVTESMA-YMVSANMDQGATDFQIEAAISKIFG 354
Query: 421 AILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVL 469
+ W + EC + GG G E V + + + FEG N++L
Sbjct: 355 SEAAW---KVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDIL 400
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 58/349 (16%)
Query: 133 VTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV 192
+ G+ D + I +G H + I FGT+ EK+L + + F +TE GS+
Sbjct: 118 IVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDA 177
Query: 193 RGIETVTTYDANTGEFIINTPCE-----SAQKYWI--GGAANHATHTIVFSQLEINGKNQ 245
I T + +PC + K WI GG A+ T VF++ +
Sbjct: 178 ASIRTSA----------VPSPCGKYYTLNGSKLWISNGGLADIFT---VFAKTPVTDPAT 224
Query: 246 G-----VHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSV 300
G + AF+ + R G I K+G+ + ++FD VR+P EN+L V
Sbjct: 225 GAVKEKITAFVVE-RGFGG-----ITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEV 278
Query: 301 ADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360
F M L +GR +A + + +A A+ ++ +R F
Sbjct: 279 GS----------------GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFG 322
Query: 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFK 420
+ ++ Q +L ++ Y A Y+ +++ + +S F
Sbjct: 323 EK-------IHNFGLIQEKLARMVMLQYVTESMA-YMVSANMDQGATDFQIEAAISKIFG 374
Query: 421 AILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVL 469
+ W + EC + GG G E V + + + FEG N++L
Sbjct: 375 SEAAW---KVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDIL 420
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 56/336 (16%)
Query: 138 DHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIET 197
D S + I VH L I G++ EK+L + C+A+TE +GS+ G+ T
Sbjct: 129 DASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGT 188
Query: 198 VTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
T G + IN QK WIG + A I+F++ N ++ FI + +DA
Sbjct: 189 TAT--KVEGGWKIN-----GQKRWIGN-STFADLLIIFAR---NTTTNQINGFIVK-KDA 236
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD 317
P ++ +KIGL V NG I NV +P E+ L V +S +D
Sbjct: 237 -----PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV----------NSFQDTS 281
Query: 318 QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAI-----RYSLSRRAFSITPNGPEVLLLD 372
+ A RV++A IG+++ I RY R+ F L
Sbjct: 282 KVLAV-------SRVMVAWQP-----IGISMGIYDMCHRYLKERKQFGAP-------LAA 322
Query: 373 YPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQ 432
+ +Q++L+ +L A L +Y ++ + +S KA ++ T
Sbjct: 323 FQLNQQKLVQMLGNVQAMFLMGWRLCKLY-----ETGQMTPGQASLGKAWISSKARETAS 377
Query: 433 ECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNV 468
RE GG G+ + V + + T+EG ++
Sbjct: 378 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDI 413
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 56/336 (16%)
Query: 138 DHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIET 197
D S + I VH L I G++ EK+L + C+A+TE +GS+ G+ T
Sbjct: 129 DASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGT 188
Query: 198 VTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
T G + IN QK WIG + A I+F++ N ++ FI + +DA
Sbjct: 189 TAT--KVEGGWKIN-----GQKRWIGN-STFADLLIIFAR---NTTTNQINGFIVK-KDA 236
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD 317
P ++ +KIGL V NG I NV +P E+ L V +S +D
Sbjct: 237 -----PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV----------NSFQDTS 281
Query: 318 QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAI-----RYSLSRRAFSITPNGPEVLLLD 372
+ A RV++A IG+++ I RY R+ F L
Sbjct: 282 KVLAV-------SRVMVAWQP-----IGISMGIYDMCHRYLKERKQFGAP-------LAA 322
Query: 373 YPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQ 432
+ +Q++L+ +L A L +Y ++ + +S KA ++ T
Sbjct: 323 FQLNQQKLVQMLGNVQAMFLMGWRLCKLY-----ETGQMTPGQASLGKAWISSKARETAS 377
Query: 433 ECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNV 468
RE GG G+ + V + + T+EG ++
Sbjct: 378 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDI 413
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 50/332 (15%)
Query: 143 IKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYD 202
+ IG+H + I +GT+ +KWL ++ AMTE G GS++ I T D
Sbjct: 89 VGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD 148
Query: 203 ANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGK--NQGVHAFICQIRDAAGN 260
+ +I+N QK +I HA +V + + K ++G+ + + RD
Sbjct: 149 GDY--YIVN-----GQKTFITNGI-HADLIVVACKTDPQAKPPHRGISLLVVE-RD---- 195
Query: 261 ICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRF 320
P K+GL+ D ++F + ++P NLL + + F
Sbjct: 196 -TPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLG----------------EEGKGF 238
Query: 321 AAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRL 380
M L R+++A ++ A++ ++ +Y R AF G V ++ + Q RL
Sbjct: 239 YYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAF-----GKRV--SEFQTVQFRL 291
Query: 381 LPLLAKSYAASCAANYLKMMYVNRTPQ---SNKTIHVVSSAFKAILTWHNMRTLQECREA 437
+ A A L +V+R + + K I S K +T R E +
Sbjct: 292 AEM-----ATEIA---LGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQL 343
Query: 438 CGGQGLKTENRVGHLKGEFDVQLTFEGDNNVL 469
GG G E + + V + G N ++
Sbjct: 344 HGGYGYMEEYEIARRYRDIPVSAIYAGTNEMM 375
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 43/311 (13%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + +K+L ++ + +TE G GS+V GI+T + E+IIN QK
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD--EYIIN-----GQK 164
Query: 220 YWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
WI GG AN + ++ + + K AF I +A P I+I +G
Sbjct: 165 MWITNGGKAN---WYFLLARSDPDPKAPANKAFTGFIVEAD---TPGIQIGRKELNMGQR 218
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
D I F++V++P+EN+L + D + F M R ++A
Sbjct: 219 CSDTRGIVFEDVKVPKENVL--IGDGAG--------------FKVAMGAFDKTRPVVAAG 262
Query: 338 SVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYL 397
+V A+ L A +Y+L R+ F LL+++ + L + K A +Y
Sbjct: 263 AVGLAQRALDEATKYALERKTFG-------KLLVEHQAISFMLAEMAMKVELARM--SYQ 313
Query: 398 KMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFD 457
+ + + + N ++ AF + + + T + + GG G TE V L +
Sbjct: 314 RAAWEVDSGRRNTYYASIAKAFAGDIA-NQLAT--DAVQILGGNGFNTEYPVEKLMRDAK 370
Query: 458 VQLTFEGDNNV 468
+ +EG + +
Sbjct: 371 IYQIYEGTSQI 381
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 43/311 (13%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + +K+L ++ + +TE G GS+V GI+T + E+IIN QK
Sbjct: 137 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD--EYIIN-----GQK 189
Query: 220 YWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
WI GG AN + ++ + + K AF I +A P I+I +G
Sbjct: 190 MWITNGGKAN---WYFLLARSDPDPKAPANKAFTGFIVEAD---TPGIQIGRKELNMGQR 243
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
D I F++V++P+EN+L + D + F M R ++A
Sbjct: 244 CSDTRGIVFEDVKVPKENVL--IGDGAG--------------FKVAMGAFDKTRPVVAAG 287
Query: 338 SVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYL 397
+V A+ L A +Y+L R+ F LL+++ + L + K A +Y
Sbjct: 288 AVGLAQRALDEATKYALERKTFG-------KLLVEHQAISFMLAEMAMKVELARM--SYQ 338
Query: 398 KMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFD 457
+ + + + N ++ AF + + + T + + GG G TE V L +
Sbjct: 339 RAAWEVDSGRRNTYYASIAKAFAGDIA-NQLAT--DAVQILGGNGFNTEYPVEKLMRDAK 395
Query: 458 VQLTFEGDNNV 468
+ +EG + +
Sbjct: 396 IYQIYEGTSQI 406
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 127/334 (38%), Gaps = 48/334 (14%)
Query: 135 GIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRG 194
GI+ +A +G+ L GT+ E++LR L FA++E G+GS+
Sbjct: 82 GIYTIPMASDLGITPVL------LAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAA 135
Query: 195 IETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQI 254
++T + +++N K WI A +VF+ + +++GV A + +
Sbjct: 136 LKTRAIRQGD--HYVLN-----GTKMWISN-GGEAEWVVVFATVNPELRHKGVVALVVE- 186
Query: 255 RDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIK 314
P + K+G + F++V++P EN L
Sbjct: 187 -----RGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLG---------------- 225
Query: 315 DPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYP 374
+ + F M L R+ +A SV A+ L A +Y+ R AF P + ++
Sbjct: 226 EEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFG-EP------IANFQ 278
Query: 375 SHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQEC 434
+ Q +L+ +L A Y + P ++ S+ KA + +
Sbjct: 279 AIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAH-----ASAIAKAYASEIAFEAANQA 333
Query: 435 REACGGQGLKTENRVGHLKGEFDVQLTFEGDNNV 468
+ GG G E V L + + +EG N +
Sbjct: 334 IQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEI 367
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + +K+L ++ + +TE G GS+V GI+T + E+IIN QK
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD--EYIIN-----GQK 164
Query: 220 YWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
WI GG AN + ++ + + K AF I +A P I+I +G
Sbjct: 165 MWITNGGKAN---WYFLLARSDPDPKAPANKAFTGFIVEAD---TPGIQIGRKELNMGQR 218
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
D I F++V++P+EN+L + D + F M R ++A
Sbjct: 219 CSDTRGIVFEDVKVPKENVL--IGDGAG--------------FKVAMGAFDKERPVVAAG 262
Query: 338 SVYKAKIGLAIAIRYSLSRRAFS 360
+V A+ L A +Y+L R+ F
Sbjct: 263 AVGLAQRALDEATKYALERKTFG 285
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 140 SLAIKIGVHFFLWGGA--IQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIET 197
S A+++ ++ + G A I +G++ +K++ + LG F +TE GS+V + +
Sbjct: 83 SSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSS 142
Query: 198 VTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
T + +++N K WI AA A I ++ + ++G+ AF+ + R+
Sbjct: 143 --TAEDKGDHWLLN-----GSKTWISNAA-QADVLIYYAYTDKAAGSRGLSAFVIEPRN- 193
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD 317
P I+ ++ K+G + G ++ DNV++P+EN+L P
Sbjct: 194 ----FPGIKTSNL-EKLGSHASPTGELFLDNVKVPKENILGK----------------PG 232
Query: 318 QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359
L R+ A V A+ L AI+Y RR F
Sbjct: 233 DGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQF 274
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 39/253 (15%)
Query: 141 LAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT 200
AI G H + I FG + +K+L L +A+TE G GS+ G +T
Sbjct: 111 FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTAR 170
Query: 201 YDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGN 260
+A +++N +K WI +A A IV+++ I+G++ AFI + +D AG
Sbjct: 171 LNAEGTHYVLN-----GEKQWITNSA-FADVFIVYAK--IDGEH--FSAFIVE-KDYAG- 218
Query: 261 ICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRF 320
+ + K G+ + ++ +P+ENLL + G ++
Sbjct: 219 ----VSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIG----KGHIIA--------- 261
Query: 321 AAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRL 380
L GR + +V AK + I+ +Y+ R+ F P + +P Q +L
Sbjct: 262 ---FNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFK-QP------IARFPLIQEKL 311
Query: 381 LPLLAKSYAASCA 393
AK+YAA +
Sbjct: 312 ANXAAKTYAAESS 324
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + +K+L ++ + +TE G GS+V GI+T + E+IIN QK
Sbjct: 112 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD--EYIIN-----GQK 164
Query: 220 YWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
WI GG AN + ++ + + K AF I +A P ++I +G
Sbjct: 165 MWITNGGKANW---YFLLARSDPDPKAPASKAFTGFIVEAD---TPGVQIGRKEINMGQR 218
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
D I F++VR+P+EN+L F M R +A
Sbjct: 219 CSDTRGIVFEDVRVPKENVLTGEG----------------AGFKIAMGTFDKTRPPVAAG 262
Query: 338 SVYKAKIGLAIAIRYSLSRRAFS 360
+V A+ L A +Y+L R+ F
Sbjct: 263 AVGLAQRALDEATKYALERKTFG 285
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 49/320 (15%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G++ ++ L + + +A++E GS+ + T D + ++I+N K
Sbjct: 115 GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGD--DWILN-----GSK 167
Query: 220 YWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGV 279
WI +T++ G N G+ AF+ D + P R K+G+ G
Sbjct: 168 CWITNGGKSTWYTVMAVTDPDKGAN-GISAFMVHKDDEGFTVGPKER------KLGIKGS 220
Query: 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSV 339
++F+N RIP + + I +P F +A L R I +V
Sbjct: 221 PTTELYFENCRIPGDRI----------------IGEPGTGFKTALATLDHTRPTIGAQAV 264
Query: 340 YKAKIGLAIAIRYSLSRRAFS--ITPN-GPEVLLLDYPSHQRRLLPLLAKSYAASCAANY 396
A+ L AI Y+ R+ F ++ N G + +L D + + L+ S AA
Sbjct: 265 GIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADM-AMKIEAARLMVYSAAA------ 317
Query: 397 LKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEF 456
R + + +S+A K + M + + GG G + V + +
Sbjct: 318 -------RAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDA 370
Query: 457 DVQLTFEGDNNVLMQQVLLS 476
+ +EG N + Q+V++S
Sbjct: 371 KITQIYEGTNQI--QRVVMS 388
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + +K+L ++ + +TE G GS+V GI+T + E+IIN QK
Sbjct: 102 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD--EYIIN-----GQK 154
Query: 220 YWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
WI GG AN + ++ + + K AF I +A P ++I +G
Sbjct: 155 MWITNGGKANW---YFLLARSDPDPKAPASKAFTGFIVEAD---TPGVQIGRKEINMGQR 208
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
D I F++VR+P+EN+L F M R +A
Sbjct: 209 CSDTRGIVFEDVRVPKENVLTG----------------EGAGFKIAMGTFDKTRPPVAAG 252
Query: 338 SVYKAKIGLAIAIRYSLSRRAFS 360
+V A+ L A +Y+L R+ F
Sbjct: 253 AVGLAQRALDEATKYALERKTFG 275
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 49/331 (14%)
Query: 140 SLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199
S+A+ + VH L + FGT+ ++WL + +G ++++E GS+ +
Sbjct: 93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAA 151
Query: 200 TYDANTGEFIINTPCESAQKYWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
T G ++IN K WI GG A+ T +F++ ++GV F+
Sbjct: 152 T--PTDGGYVIN-----GSKSWITHGGKADFYT---LFAR--TGEGSRGVSCFLVPADQ- 198
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD 317
P + K+GL+ V ++DN RI + + +GQ L
Sbjct: 199 -----PGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGE------EGQGLQ------ 241
Query: 318 QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQ 377
AF A L SGR+ IA + A+ L A+ Y+ R AF G +++ HQ
Sbjct: 242 ---IAFSA-LDSGRLGIAAVATGLAQAALDEAVAYANERTAF-----GRKII-----DHQ 287
Query: 378 RRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREA 437
L L AA+ A + R + +S K T M+ + +
Sbjct: 288 G--LGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQV 345
Query: 438 CGGQGLKTENRVGHLKGEFDVQLTFEGDNNV 468
GG G + RV E + FEG N +
Sbjct: 346 FGGVGYTRDYRVERYMREAKIMQIFEGTNQI 376
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 138 DHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIET 197
D S+A+ + V L + FG++ ++L +G F +TE GS+ + +
Sbjct: 78 DPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRA 137
Query: 198 VTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
G F++N K WI +A HA +V ++ E +G+ AF+ +
Sbjct: 138 EARR--VKGGFVLN-----GVKSWIT-SAGHAHLYVVMARTE-----KGISAFLVE---- 180
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPD 317
P + K+GL+ + + V +P ENLL +
Sbjct: 181 --KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLG----------------EEG 222
Query: 318 QRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359
+ A +A L SGRV +A +V A+ IA Y+ R F
Sbjct: 223 RGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQF 264
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 45/313 (14%)
Query: 156 IQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCE 215
I +G++ +K+L +LGCF +TE GS+ +ET Y+++ + +N
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN---- 163
Query: 216 SAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIG 275
K WI + A +V+++ E + + F+ + + G P I+ K
Sbjct: 164 -GTKTWITNSP-MADLFVVWARCE----DGCIRGFLLE-KGMRGLSAPRIQ-----GKFS 211
Query: 276 LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIA 335
L G I D V +P EN+L SS+ P L + R IA
Sbjct: 212 LRASATGMIIMDGVEVPEENVLPGA----------SSLGGP-------FGCLNNARYGIA 254
Query: 336 GSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAAN 395
+ ++ L A +Y+L R F + +++ Q++L +L + A
Sbjct: 255 WGVLGASEFCLHTARQYALDRMQFGVPLARNQLI-------QKKLADMLTEITLGLHAC- 306
Query: 396 YLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGE 455
+ + R +K + S K + ++ R+ GG G+ E V
Sbjct: 307 ----LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 362
Query: 456 FDVQLTFEGDNNV 468
+ T+EG +++
Sbjct: 363 LEAVNTYEGTHDI 375
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 122/313 (38%), Gaps = 45/313 (14%)
Query: 156 IQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCE 215
I +G++ +K+L +LGCF +TE GS+ +ET Y+++ + +N
Sbjct: 106 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN---- 161
Query: 216 SAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIG 275
K WI + A +V+++ E + + F+ + + G P I+ K
Sbjct: 162 -GTKTWITNSP-MADLFVVWARCE----DGCIRGFLLE-KGMRGLSAPRIQ-----GKFS 209
Query: 276 LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIA 335
L G I D V +P EN+L SS+ P L + R IA
Sbjct: 210 LRASATGMIIMDGVEVPEENVLPGA----------SSLGGP-------FGCLNNARYGIA 252
Query: 336 GSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAAN 395
+ ++ L A +Y+L R F + P L+ Q++L +L + A
Sbjct: 253 WGVLGASEFCLHTARQYALDRMQFGV-PLARNQLI------QKKLADMLTEITLGLHAC- 304
Query: 396 YLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGE 455
+ + R +K + S K + ++ R+ GG G+ E V
Sbjct: 305 ----LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 360
Query: 456 FDVQLTFEGDNNV 468
+ T+EG +++
Sbjct: 361 LEAVNTYEGTHDI 373
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 122/313 (38%), Gaps = 45/313 (14%)
Query: 156 IQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCE 215
I +G++ +K+L +LGCF +TE GS+ +ET Y+++ + +N
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN---- 163
Query: 216 SAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIG 275
K WI + A +V+++ E + + F+ + + G P I+ K
Sbjct: 164 -GTKTWITNSP-MADLFVVWARCE----DGCIRGFLLE-KGMRGLSAPRIQ-----GKFS 211
Query: 276 LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIA 335
L G I D V +P EN+L SS+ P L + R IA
Sbjct: 212 LRASATGMIIMDGVEVPEENVLPGA----------SSLGGP-------FGCLNNARYGIA 254
Query: 336 GSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAAN 395
+ ++ L A +Y+L R F + P L+ Q++L +L + A
Sbjct: 255 WGVLGASEFCLHTARQYALDRMQFGV-PLARNQLI------QKKLADMLTEITLGLHAC- 306
Query: 396 YLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGE 455
+ + R +K + S K + ++ R+ GG G+ E V
Sbjct: 307 ----LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 362
Query: 456 FDVQLTFEGDNNV 468
+ T++G +++
Sbjct: 363 LEAVNTYDGTHDI 375
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 116/310 (37%), Gaps = 44/310 (14%)
Query: 159 FGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQ 218
FG+ EK+L +GCF +TE HGS+ + VT G + + S
Sbjct: 114 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSM--VTRARKVPGGYSL-----SGS 166
Query: 219 KYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278
K WI + A +V+++L+ +G+++ + FI + + G P I K+GL
Sbjct: 167 KMWITNSPI-ADVFVVWAKLDEDGRDE-IRGFILE-KGCKGLSAPAIH-----GKVGLRA 218
Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSS 338
G I D +P EN+L ++ ++ P L S R IA +
Sbjct: 219 SITGEIVLDEAFVPEENIL----------PHVKGLRGP-------FTCLNSARYGIAWGA 261
Query: 339 VYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLK 398
+ A+ IA +Y L R+ F P +L+
Sbjct: 262 LGAAESCWHIARQYVLDRKQFG------------RPLAANQLIQKKLADMQTEITLGLQG 309
Query: 399 MMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDV 458
++ + R ++S K + + R+ GG G+ E V +V
Sbjct: 310 VLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEV 369
Query: 459 QLTFEGDNNV 468
T+EG +++
Sbjct: 370 VNTYEGTHDI 379
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 159 FGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQ 218
FG+ EK+L +GCF +TE HGS+ + VT G + + S
Sbjct: 118 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSM--VTRARKVPGGYSL-----SGS 170
Query: 219 KYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278
K WI + A +V+++L+ +G+++ + FI + + G P I K+GL
Sbjct: 171 KMWITNSPI-ADVFVVWAKLDEDGRDE-IRGFILE-KGCKGLSAPAIH-----GKVGLRA 222
Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSS 338
G I D +P EN+L ++ ++ P L S R IA +
Sbjct: 223 SITGEIVLDEAFVPEENIL----------PHVKGLRGP-------FTCLNSARYGIAWGA 265
Query: 339 VYKAKIGLAIAIRYSLSRRAFS 360
+ A+ IA +Y L R+ F
Sbjct: 266 LGAAESCWHIARQYVLDRKQFG 287
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 116/310 (37%), Gaps = 44/310 (14%)
Query: 159 FGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQ 218
FG+ EK+L +GCF +TE HGS+ + VT G + + S
Sbjct: 115 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSM--VTRARKVPGGYSL-----SGS 167
Query: 219 KYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278
K WI + A +V+++L+ +G+++ + FI + + G P I K+GL
Sbjct: 168 KMWITNSPI-ADVFVVWAKLDEDGRDE-IRGFILE-KGCKGLSAPAIH-----GKVGLRA 219
Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSS 338
G I D +P EN+L ++ ++ P L S R IA +
Sbjct: 220 SITGEIVLDEAFVPEENIL----------PHVKGLRGP-------FTCLNSARYGIAWGA 262
Query: 339 VYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLK 398
+ A+ IA +Y L R+ F P +L+
Sbjct: 263 LGAAESCWHIARQYVLDRKQFG------------RPLAANQLIQKKLADMQTEITLGLQG 310
Query: 399 MMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDV 458
++ + R ++S K + + R+ GG G+ E V +V
Sbjct: 311 VLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEV 370
Query: 459 QLTFEGDNNV 468
T+EG +++
Sbjct: 371 VNTYEGTHDI 380
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 140 SLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199
++ G H + + +FGT+ K+L + + + +TE G GS+ +T
Sbjct: 105 GFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRA 164
Query: 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG 259
T + +I+N K WI A T VF++ ++G++ AF+ + RD
Sbjct: 165 TLSEDGKHYILN-----GVKQWISNAGFAHLFT-VFAK--VDGEH--FTAFLVE-RD--- 210
Query: 260 NICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQR 319
P + K+G+ ++ ++V++P EN+L + G +
Sbjct: 211 --TPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIG----KGHKI--------- 255
Query: 320 FAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRR 379
AF L GR + +V AK L ++ +Y+ R F P G L+ Q++
Sbjct: 256 --AFNV-LNVGRYKLGAGAVGGAKRALELSAQYATQRVQFG-RPIGRFGLI------QQK 305
Query: 380 LLPLLAKSYAASCA 393
L + ++ YAA A
Sbjct: 306 LGEMASRIYAAESA 319
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 138 DHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIET 197
D S+A+ + L I+ GT+ +L V G F ++E G GS+ ++T
Sbjct: 104 DASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKV-GSFCLSEAGAGSDSFALKT 162
Query: 198 VTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257
D +++N K WI +A HA +V + ++ +G+ +F+ RD
Sbjct: 163 RA--DKEGDYYVLN-----GSKMWIS-SAEHAGLFLVMANVDPTIGYKGITSFLVD-RD- 212
Query: 258 AGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVA 301
P + I +K+GL + F+NV++P N+L +
Sbjct: 213 ----TPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIG 252
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 155 AIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPC 214
AI FG+ ++WL D + +GCF +TE HGS+ G+ T T + ++I+
Sbjct: 122 AIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGD--DWIL---- 175
Query: 215 ESAQKYWI--GGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGH 272
+ K WI G A+ A +V+++ ++G+ F+ D G I+
Sbjct: 176 -TGTKMWITNGSVADVA---VVWAR-----TDEGIRGFVVPT-DTPGFTANTIK-----S 220
Query: 273 KIGLNGVDNGRIWFDNVRIP 292
K+ L + D VR+P
Sbjct: 221 KMSLRASVTSELVLDGVRLP 240
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 108/314 (34%), Gaps = 48/314 (15%)
Query: 155 AIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPC 214
+I +G++ +WL +GCF +TE GSN G+ T D + ++I+N
Sbjct: 117 SIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGS--DWILN--- 171
Query: 215 ESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKI 274
K WI N A V++Q + G+ F+ P + K+
Sbjct: 172 --GTKMWITN-GNLADVATVWAQ-----TDDGIRGFLVPTD------TPGFTANEIHRKL 217
Query: 275 GLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVII 334
L + DNVR+P L P + LS A ++ L R I
Sbjct: 218 SLRASVTSELVLDNVRLPASAQL-------PLAEGLS----------APLSCLNEARFGI 260
Query: 335 AGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAA 394
++ A+ L I Y+ SR F D P +L +
Sbjct: 261 VFGALGAARDSLETTIAYTQSREVF------------DKPLSNYQLTQEKLANMTVELGK 308
Query: 395 NYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKG 454
L +++ R + S K + +ECR GG G+ E
Sbjct: 309 GMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHAN 368
Query: 455 EFDVQLTFEGDNNV 468
+ LT+EG + +
Sbjct: 369 NLESVLTYEGTSEM 382
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 74/207 (35%), Gaps = 34/207 (16%)
Query: 159 FGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQ 218
+G+Q E WL + F MTE S+ T E +IN +
Sbjct: 124 YGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASS-DATNMAATAVVEGDEVVIN-----GR 177
Query: 219 KYWIGGAANHATHTIVFSQL-EINGKNQGVHAFICQIRDAAG----NICPNIRIADCGHK 273
K+W G + I+F L + N H+ + D G + P + D +
Sbjct: 178 KWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYD---E 234
Query: 274 IGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVI 333
G +GV + FDNVR+P + I P + F L GRV
Sbjct: 235 PGGHGV----VSFDNVRLPADAF----------------IAGPGKGFEIAQGRLGPGRVH 274
Query: 334 IAGSSVYKAKIGLAIAIRYSLSRRAFS 360
A + A++ L A R L R AF
Sbjct: 275 HAMRLIGLAEVALEHACRRGLDRTAFG 301
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 137 FDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIE 196
+D +LA+ + H L G I G++ E +L + LG + +TE G GS+ ++
Sbjct: 81 YDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALK 140
Query: 197 TVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRD 256
T + G + +N + + + G T E K+QG+ AF R
Sbjct: 141 TKA--EKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER--KHQGISAFAF-FRP 195
Query: 257 AAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLN 298
G +++ K+GL D ++ +++ +P E LL
Sbjct: 196 ERG-----LKVGRKEEKLGLTASDTAQLILEDLFVPEEALLG 232
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G + EK+L + +G AM+E GS+V ++ N +I+N K
Sbjct: 112 GNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGN--HYILN-----GNK 164
Query: 220 YWIGGAANHATHTIVFSQLEING--KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLN 277
+WI + A IV+++ ++ ++G+ AFI + P + K+G+
Sbjct: 165 FWITNGPD-ADVLIVYAKTDLAAVPASRGITAFIVE------KGMPGFSTSKKLDKLGMR 217
Query: 278 GVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGS 337
G + + F++ +IP N+L G Y+ M+ L R+++AG
Sbjct: 218 GSNTCELIFEDCKIPAANILGH----ENKGVYV------------LMSGLDLERLVLAGG 261
Query: 338 SVYKAKIGLAIAIRYSLSRRAFS 360
+ + L I Y R AF
Sbjct: 262 PLGLMQAVLDHTIPYLHVREAFG 284
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 33/202 (16%)
Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
G QR + ++R T +G A+TE G GS+V + T D + ++IN A+
Sbjct: 124 GDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGD--HYVIN----GAKT 177
Query: 220 YWIGGA-ANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNG 278
Y G A++ V + G G + I + P + K+G
Sbjct: 178 YITSGVRADY-----VVTAARTGGPGAGGVSLIVVDKG-----TPGFEVTRKLDKMGWRS 227
Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSS 338
D + + +VR+P NL+ S + FA A + RV +A +
Sbjct: 228 SDTAELSYTDVRVPVANLVGS----------------ENTGFAQIAAAFVAERVGLATQA 271
Query: 339 VYKAKIGLAIAIRYSLSRRAFS 360
A+ L + + + +R F
Sbjct: 272 YAGAQRCLDLTVEWCRNRDTFG 293
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 166 EKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGA 225
E+++R T ++G +TE G GS+V + T + +T +++N A+ + G
Sbjct: 133 ERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDT--YVVN----GAKTFITSG- 185
Query: 226 ANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIW 285
V + + G G + + +++ P ++ K+G D +
Sbjct: 186 ---VRADFVTTAVRTGGPGYGGVSLLVIDKNS-----PGFEVSRRLDKMGWRCSDTAELS 237
Query: 286 FDNVRIPRENLLNS 299
F +VR+P +NL+ +
Sbjct: 238 FVDVRVPADNLVGA 251
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 156 IQFFGTQRHHEKWLRDTENYVVLGCFAMTELG-HGSNVRGIETVTTYDANTGEFIINTPC 214
+ +G++ ++WL + CF MTE S+ IE D ++ ++IN
Sbjct: 127 LHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDS--YVIN--- 181
Query: 215 ESAQKYWIGGAAN 227
+K+W GA N
Sbjct: 182 --GKKWWSSGAGN 192
>pdb|3S9I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With 2-4-dioxo-4-phenylbutanoic Acid
Inhibitor
pdb|3S9Z|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-mehtylphenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(3-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SB0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-chloro-6-fluoro-3-methylphenyl)-2,4-dioxobutanoic
Acid Inhibitor
Length = 741
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 147 VHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206
+H + G + GT + + W+ E++ V A G +G+ T+T A+
Sbjct: 468 IHTSMEAGPMVRKGTMKS-QPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMV 526
Query: 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGV 247
E I P A W+ H + + Q+++ QG+
Sbjct: 527 ETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 567
>pdb|1N8I|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|B Chain B, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
Length = 741
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 147 VHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206
+H + G + GT + + W+ E++ V A G +G+ T+T A+
Sbjct: 468 IHTSMEAGPMVRKGTMKS-QPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMV 526
Query: 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGV 247
E I P A W+ H + + Q+++ QG+
Sbjct: 527 ETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 567
>pdb|2GQ3|A Chain A, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
pdb|2GQ3|B Chain B, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
Length = 729
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 147 VHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206
+H + G + GT + + W+ E++ V A G +G+ T+T A+
Sbjct: 470 IHTSMEAGPMVRKGTMKS-QPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMV 528
Query: 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGV 247
E I P A W+ H + + Q+++ QG+
Sbjct: 529 ETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,057,112
Number of Sequences: 62578
Number of extensions: 571071
Number of successful extensions: 1333
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 45
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)